Query 046000
Match_columns 470
No_of_seqs 242 out of 3051
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 07:41:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-50 2.5E-55 424.6 32.1 454 4-467 85-566 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.3E-49 5E-54 414.9 32.3 452 11-469 68-544 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.9E-39 6.3E-44 290.4 7.8 365 35-435 82-450 (873)
4 KOG0472 Leucine-rich repeat pr 100.0 4.2E-41 9E-46 289.2 -7.4 436 4-461 83-541 (565)
5 KOG4194 Membrane glycoprotein 100.0 1.4E-38 3E-43 286.1 7.6 364 13-387 79-450 (873)
6 KOG0444 Cytoskeletal regulator 100.0 1.3E-33 2.7E-38 256.6 1.8 364 32-437 8-375 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 2.4E-34 5.2E-39 247.7 -6.8 442 3-469 59-525 (565)
8 KOG0618 Serine/threonine phosp 100.0 8.6E-33 1.9E-37 261.6 -0.4 427 7-459 40-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 1.1E-31 2.5E-36 244.0 -1.1 372 52-466 4-379 (1255)
10 KOG0618 Serine/threonine phosp 100.0 1E-30 2.2E-35 247.7 -5.6 430 3-463 12-467 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.2E-22 2.5E-27 213.9 25.8 347 98-461 552-906 (1153)
12 KOG4237 Extracellular matrix p 99.9 7E-26 1.5E-30 195.3 -0.4 416 18-458 52-498 (498)
13 PLN03210 Resistant to P. syrin 99.9 3.1E-22 6.8E-27 210.6 26.1 341 47-411 550-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.8 7E-20 1.5E-24 179.5 15.4 261 161-466 203-463 (788)
15 KOG4237 Extracellular matrix p 99.8 1.3E-22 2.8E-27 175.3 -3.3 254 183-437 67-359 (498)
16 PRK15387 E3 ubiquitin-protein 99.8 2.4E-19 5.3E-24 175.7 16.5 267 134-446 201-467 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 9.5E-20 2.1E-24 167.5 6.9 273 188-460 3-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 2.3E-17 5E-22 162.9 13.4 246 160-437 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.2E-18 2.6E-23 160.2 2.6 280 138-436 2-319 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 4.3E-17 9.3E-22 161.0 11.5 246 135-413 179-428 (754)
21 KOG0617 Ras suppressor protein 99.6 1.6E-17 3.4E-22 127.6 -3.1 160 303-468 32-192 (264)
22 KOG0617 Ras suppressor protein 99.5 4.5E-16 9.8E-21 119.6 -3.8 163 278-447 31-195 (264)
23 KOG1909 Ran GTPase-activating 99.4 2.3E-13 5E-18 116.9 2.3 230 207-436 29-310 (382)
24 KOG1909 Ran GTPase-activating 99.3 8E-13 1.7E-17 113.6 5.1 234 227-460 25-310 (382)
25 PF14580 LRR_9: Leucine-rich r 99.3 3E-12 6.4E-17 103.3 6.3 122 331-456 21-148 (175)
26 KOG3207 Beta-tubulin folding c 99.3 9E-13 2E-17 116.6 1.4 210 229-438 118-340 (505)
27 KOG1259 Nischarin, modulator o 99.3 1.5E-12 3.2E-17 109.7 2.0 137 322-465 278-415 (490)
28 KOG3207 Beta-tubulin folding c 99.2 2.3E-12 5E-17 114.0 2.2 164 52-221 118-284 (505)
29 KOG1259 Nischarin, modulator o 99.2 3E-12 6.6E-17 107.8 2.1 221 207-438 181-413 (490)
30 PF14580 LRR_9: Leucine-rich r 99.2 5.6E-12 1.2E-16 101.7 3.4 104 8-114 15-123 (175)
31 KOG0532 Leucine-rich repeat (L 99.1 4.9E-12 1.1E-16 115.6 -1.4 193 257-459 76-271 (722)
32 KOG0532 Leucine-rich repeat (L 99.1 4E-12 8.6E-17 116.2 -2.3 178 279-466 74-251 (722)
33 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3.1E-15 109.7 7.4 153 305-464 141-293 (394)
34 PF13855 LRR_8: Leucine rich r 99.1 2E-10 4.3E-15 76.2 4.1 59 401-459 2-60 (61)
35 KOG4658 Apoptotic ATPase [Sign 99.0 2.9E-10 6.2E-15 115.0 6.9 129 9-145 520-653 (889)
36 PF13855 LRR_8: Leucine rich r 99.0 3.5E-10 7.5E-15 75.0 4.7 61 376-436 1-61 (61)
37 KOG4658 Apoptotic ATPase [Sign 99.0 3.7E-10 8.1E-15 114.2 5.7 127 134-265 523-651 (889)
38 COG4886 Leucine-rich repeat (L 99.0 1.2E-09 2.5E-14 103.5 7.9 150 257-413 141-290 (394)
39 PLN03150 hypothetical protein; 99.0 8.2E-10 1.8E-14 109.3 7.0 111 355-465 420-532 (623)
40 PLN03150 hypothetical protein; 98.9 2.4E-09 5.1E-14 106.1 8.5 92 377-468 419-510 (623)
41 KOG2120 SCF ubiquitin ligase, 98.8 4.2E-10 9.1E-15 95.0 -3.1 110 131-243 257-374 (419)
42 KOG1859 Leucine-rich repeat pr 98.7 4.4E-10 9.4E-15 106.1 -3.8 126 331-461 166-292 (1096)
43 KOG0531 Protein phosphatase 1, 98.7 1.5E-09 3.2E-14 102.8 -0.6 104 207-316 94-198 (414)
44 KOG2120 SCF ubiquitin ligase, 98.7 8.2E-10 1.8E-14 93.3 -3.2 175 281-458 186-373 (419)
45 COG5238 RNA1 Ran GTPase-activa 98.7 2.8E-08 6E-13 83.1 5.4 90 228-317 26-133 (388)
46 KOG2982 Uncharacterized conser 98.7 4.7E-09 1E-13 88.8 0.8 82 374-455 197-286 (418)
47 KOG4341 F-box protein containi 98.7 2.1E-09 4.5E-14 95.2 -1.7 280 32-315 139-437 (483)
48 KOG0531 Protein phosphatase 1, 98.7 4.2E-09 9.1E-14 99.8 0.0 127 31-172 72-199 (414)
49 KOG3665 ZYG-1-like serine/thre 98.6 1.6E-08 3.4E-13 99.9 1.6 154 12-167 122-283 (699)
50 COG5238 RNA1 Ran GTPase-activa 98.6 2.1E-08 4.7E-13 83.8 1.4 230 208-438 30-317 (388)
51 KOG1859 Leucine-rich repeat pr 98.6 3E-09 6.5E-14 100.6 -4.1 176 6-195 103-291 (1096)
52 KOG4341 F-box protein containi 98.5 2.6E-09 5.7E-14 94.5 -5.4 154 230-383 292-459 (483)
53 KOG2982 Uncharacterized conser 98.5 1.8E-07 3.8E-12 79.5 4.4 83 182-264 198-287 (418)
54 KOG4579 Leucine-rich repeat (L 98.4 1.8E-08 3.9E-13 75.2 -1.9 131 331-465 29-163 (177)
55 KOG1644 U2-associated snRNP A' 98.4 5.6E-07 1.2E-11 72.2 5.0 130 13-147 20-153 (233)
56 PF12799 LRR_4: Leucine Rich r 98.3 8E-07 1.7E-11 53.6 3.1 36 425-461 2-37 (44)
57 KOG1644 U2-associated snRNP A' 98.2 3.5E-06 7.6E-11 67.7 5.6 106 352-458 41-150 (233)
58 PF12799 LRR_4: Leucine Rich r 98.1 3.6E-06 7.9E-11 50.7 3.3 38 400-438 1-38 (44)
59 KOG4579 Leucine-rich repeat (L 98.1 4.3E-07 9.2E-12 68.0 -1.2 83 305-389 54-136 (177)
60 PRK15386 type III secretion pr 98.0 3.9E-05 8.4E-10 70.3 8.6 139 275-435 47-188 (426)
61 KOG3665 ZYG-1-like serine/thre 97.9 7.1E-06 1.5E-10 81.5 3.4 186 255-442 59-268 (699)
62 PRK15386 type III secretion pr 97.8 7.5E-05 1.6E-09 68.5 8.2 140 252-411 48-188 (426)
63 PF13306 LRR_5: Leucine rich r 97.7 0.00012 2.6E-09 57.1 7.1 114 331-450 14-128 (129)
64 PF13306 LRR_5: Leucine rich r 97.7 0.00011 2.5E-09 57.2 7.0 117 347-469 6-123 (129)
65 KOG1947 Leucine rich repeat pr 97.6 1.5E-05 3.2E-10 78.0 0.9 112 30-145 187-306 (482)
66 KOG2123 Uncharacterized conser 97.6 4.8E-06 1E-10 70.3 -3.2 82 31-116 19-100 (388)
67 KOG2123 Uncharacterized conser 97.5 3.4E-06 7.3E-11 71.2 -4.9 99 10-110 17-123 (388)
68 KOG2739 Leucine-rich acidic nu 97.4 0.00014 3E-09 61.4 3.4 110 30-144 42-153 (260)
69 KOG2739 Leucine-rich acidic nu 97.4 8.4E-05 1.8E-09 62.7 2.0 114 345-459 35-154 (260)
70 KOG1947 Leucine rich repeat pr 97.3 7.6E-05 1.7E-09 73.0 0.4 110 207-316 187-307 (482)
71 KOG3864 Uncharacterized conser 96.4 0.0007 1.5E-08 54.9 -0.2 82 376-457 101-185 (221)
72 PF00560 LRR_1: Leucine Rich R 96.4 0.0015 3.3E-08 32.5 0.9 20 449-469 1-20 (22)
73 PF00560 LRR_1: Leucine Rich R 95.7 0.0062 1.4E-07 30.3 1.2 12 402-413 2-13 (22)
74 PF13504 LRR_7: Leucine rich r 95.7 0.0071 1.5E-07 27.8 1.3 13 449-461 2-14 (17)
75 KOG4308 LRR-containing protein 94.9 0.0003 6.5E-09 67.1 -9.1 182 257-438 88-304 (478)
76 KOG4308 LRR-containing protein 94.5 0.001 2.2E-08 63.6 -6.6 182 14-197 89-304 (478)
77 KOG0473 Leucine-rich repeat pr 94.0 0.0029 6.3E-08 52.6 -4.1 84 7-92 37-124 (326)
78 PF13516 LRR_6: Leucine Rich r 93.3 0.021 4.5E-07 29.1 -0.2 14 424-437 2-15 (24)
79 KOG3864 Uncharacterized conser 93.2 0.014 3.1E-07 47.5 -1.4 80 331-410 103-186 (221)
80 PF13516 LRR_6: Leucine Rich r 92.8 0.053 1.1E-06 27.5 0.9 19 55-73 2-20 (24)
81 smart00370 LRR Leucine-rich re 92.4 0.094 2E-06 27.2 1.5 16 448-463 2-17 (26)
82 smart00369 LRR_TYP Leucine-ric 92.4 0.094 2E-06 27.2 1.5 16 448-463 2-17 (26)
83 smart00369 LRR_TYP Leucine-ric 90.4 0.25 5.4E-06 25.5 1.9 15 55-69 2-16 (26)
84 smart00370 LRR Leucine-rich re 90.4 0.25 5.4E-06 25.5 1.9 15 55-69 2-16 (26)
85 KOG0473 Leucine-rich repeat pr 89.7 0.012 2.5E-07 49.1 -5.3 87 349-437 38-124 (326)
86 smart00364 LRR_BAC Leucine-ric 87.2 0.41 8.8E-06 24.7 1.3 18 448-466 2-19 (26)
87 smart00368 LRR_RI Leucine rich 85.6 0.34 7.4E-06 25.7 0.6 18 424-441 2-19 (28)
88 KOG4242 Predicted myosin-I-bin 83.6 4.7 0.0001 38.0 7.1 107 134-243 165-279 (553)
89 smart00365 LRR_SD22 Leucine-ri 79.9 1.5 3.3E-05 22.7 1.6 14 448-461 2-15 (26)
90 KOG3763 mRNA export factor TAP 74.4 1.9 4.2E-05 41.3 1.8 35 352-386 217-254 (585)
91 KOG3763 mRNA export factor TAP 72.5 2.3 4.9E-05 40.8 1.8 63 374-438 216-284 (585)
92 smart00367 LRR_CC Leucine-rich 61.2 6.1 0.00013 20.2 1.4 11 12-22 2-12 (26)
93 KOG4242 Predicted myosin-I-bin 53.8 59 0.0013 31.1 7.1 281 11-292 164-480 (553)
94 TIGR00864 PCC polycystin catio 30.7 31 0.00068 40.7 2.0 32 382-413 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-50 Score=424.62 Aligned_cols=454 Identities=31% Similarity=0.448 Sum_probs=210.6
Q ss_pred ccccccCCCcCceeeccCCCCCCccc------cccccccccccccC----------------------CCCchHhhhcCC
Q 046000 4 LGAGLHKLKNLEALDLSFNNINGTVE------SQESFELNLAKNNI----------------------GGHLLDCLNNMT 55 (470)
Q Consensus 4 l~~~l~~~~~L~~L~ls~~~~~~~~~------~~~L~~L~l~~~~~----------------------~~~~~~~~~~~~ 55 (470)
++.++..+++|++|+|++|++.+..+ +.+|++|++++|++ .+..|..+++++
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCC
Confidence 34455556666666666665543221 34455555555444 444455555555
Q ss_pred CCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCc
Q 046000 56 RLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHD 135 (470)
Q Consensus 56 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 135 (470)
+|++|++++|.+.+..|..+.++++|++|++++|.+.+..| ..+.++++|+.|+++.|.+.. ..+..+..+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~ 237 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQMKSLKWIYLGYNNLSG------EIPYEIGGLTS 237 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcCcCCccEEECcCCccCC------cCChhHhcCCC
Confidence 55555555555544455555555555555555555443333 344455555555555443321 11223344444
Q ss_pred ccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeec
Q 046000 136 LKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDM 215 (470)
Q Consensus 136 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 215 (470)
|++|++++|.+.+.+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+. .+++|++|++
T Consensus 238 L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l 315 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHL 315 (968)
T ss_pred CCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEEC
Confidence 555555555444333332 22444455555554444433344444444444455444444433333222 2444444444
Q ss_pred cCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccc
Q 046000 216 ANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGK 295 (470)
Q Consensus 216 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 295 (470)
++|.+.+..|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++++.+++++|.+.+.
T Consensus 316 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred CCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence 44444444444444444444444444444444444444444444444444444333333333334444444444444333
Q ss_pred cchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccccc
Q 046000 296 IEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSL 375 (470)
Q Consensus 296 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 375 (470)
.+..+..+++|+.|++++|.+.+..|..+..++. ++.+++++|.+.+.++..+..+++|+.|++++|.+....+..+..
T Consensus 396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 474 (968)
T PLN00113 396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL-VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS 474 (968)
T ss_pred CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC-CCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccccc
Confidence 3444444445555555555544444444444333 445555555444444444444444444444444443332222233
Q ss_pred CcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEc
Q 046000 376 SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDL 455 (470)
Q Consensus 376 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l 455 (470)
++|+.|++++|++.+..|..+..+++|+.|++++|++.+.+|+.+..+++|++|++++|.+++.+|..+..+++|+.|++
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 44444444444444444444444444555555555444444444444444444444444444444444444444444444
Q ss_pred cCcccccccCCC
Q 046000 456 SHNRINGSIPSC 467 (470)
Q Consensus 456 ~~n~~~~~~p~~ 467 (470)
++|++++.+|..
T Consensus 555 s~N~l~~~~p~~ 566 (968)
T PLN00113 555 SQNQLSGEIPKN 566 (968)
T ss_pred CCCcccccCChh
Confidence 444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.3e-49 Score=414.87 Aligned_cols=452 Identities=30% Similarity=0.449 Sum_probs=304.5
Q ss_pred CCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhh-cCCCCcEEEccCCccccccchhhhcCcCCcEE
Q 046000 11 LKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLN-NMTRLKVLDTSFNQLSGSLPSVIVNLASVEYL 84 (470)
Q Consensus 11 ~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 84 (470)
..+++.||++++.+.+..+ +++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+..|. +.+++|++|
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 4589999999998876654 88999999999999877777654 788888888888877654443 345556666
Q ss_pred eccCccCcCccChhhhccccccceecccCCCCcccccc------------------ccCCCCcccccCcccEEEccCccc
Q 046000 85 DLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLK------------------TENFLPTFQLKHDLKYLDLSHNNL 146 (470)
Q Consensus 85 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~------------------~~~~~~~~~~~~~L~~L~l~~~~i 146 (470)
++++|.+.+..| ..+..+++|++|++++|.+...... ....+..+..+++|++|++++|.+
T Consensus 146 ~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCC-hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 666665554444 3455555555555555543210000 001122344445555555555555
Q ss_pred cCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCch
Q 046000 147 AGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPS 226 (470)
Q Consensus 147 ~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 226 (470)
.+.+|..+ ..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+.+..|.
T Consensus 225 ~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 225 SGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred CCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeeccCCCh
Confidence 54444432 34555555555555555444555555555666666555555444444332 55666666666665555555
Q ss_pred hhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCc
Q 046000 227 SIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQL 306 (470)
Q Consensus 227 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 306 (470)
.+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..++.+++|+.+++++|++.+..+..+...+++
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 55666666666666666555555555666666666666666655555556666666666666666665555666666666
Q ss_pred cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccC
Q 046000 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQR 385 (470)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~ 385 (470)
+.+++++|.+.+..|..+..+.. ++.+++++|.+++..|..+..++.|+.|++++|.+....+..+ .+++|++|++++
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCC-CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 66666666666666666666555 7777777777777777777777788888888887766554433 678888888888
Q ss_pred CcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccC
Q 046000 386 NDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP 465 (470)
Q Consensus 386 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p 465 (470)
|++.+..|..+ ..++|+.|++++|++.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|
T Consensus 462 n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 462 NKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred ceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC
Confidence 88876666654 45889999999999988888889999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 046000 466 SCFT 469 (470)
Q Consensus 466 ~~~~ 469 (470)
..|.
T Consensus 541 ~~~~ 544 (968)
T PLN00113 541 ASFS 544 (968)
T ss_pred hhHh
Confidence 8764
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-39 Score=290.42 Aligned_cols=365 Identities=25% Similarity=0.252 Sum_probs=258.7
Q ss_pred ccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCC
Q 046000 35 ELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114 (470)
Q Consensus 35 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 114 (470)
.|++++|.+....+..|.++++|+.+++.+|.++ .+|...+...+|+.|+|.+|.|. ......+..++.
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~a--------- 150 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPA--------- 150 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhh---------
Confidence 4555555555555555555555555555555554 44444444444555555555544 222234444444
Q ss_pred CCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCc
Q 046000 115 NNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN 194 (470)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~ 194 (470)
||.||++.|.|+ +++..-+..-.++++|++++|.|+......+..+.+|..|.++.|.
T Consensus 151 ---------------------lrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 151 ---------------------LRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred ---------------------hhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 555555555555 5554444445566677777776666666666677777777777777
Q ss_pred ccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchh
Q 046000 195 FTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFP 274 (470)
Q Consensus 195 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 274 (470)
++ .+|...|..+++|+.|++..|++....-..|.++++|+.|.+..|.+......+|.++.++++|+++.|++......
T Consensus 209 it-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 209 IT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred cc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 77 77888888788888888888887644455688888888888888888877778888888888888888888776666
Q ss_pred hhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCC
Q 046000 275 KYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGS 354 (470)
Q Consensus 275 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~ 354 (470)
.+.++.+|+.|+++.|.|.....+.+..+++|++|++++|+++.--+.++..+.. +++|.+++|.++......|..+.+
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lss 366 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSS 366 (873)
T ss_pred cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHHhhh
Confidence 7778888888888888888777888888888888888888888444445554444 888888888887555556778888
Q ss_pred CeEEEccCccccC---cccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEE
Q 046000 355 LQLLSVSENCLSG---FMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLL 430 (470)
Q Consensus 355 L~~L~l~~~~l~~---~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 430 (470)
|++|||+.|++.- .....| .++.|++|.+.||++..+...+|.++++|+.|||.+|.|.++-+..|+.+ +|++|.
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv 445 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELV 445 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhh
Confidence 8999998887542 233333 68889999999999887777888899999999999999988888888888 888887
Q ss_pred ccCcc
Q 046000 431 LRGNY 435 (470)
Q Consensus 431 l~~n~ 435 (470)
+..-.
T Consensus 446 ~nSss 450 (873)
T KOG4194|consen 446 MNSSS 450 (873)
T ss_pred hcccc
Confidence 75543
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-41 Score=289.19 Aligned_cols=436 Identities=23% Similarity=0.339 Sum_probs=323.1
Q ss_pred ccccccCCCcCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCc
Q 046000 4 LGAGLHKLKNLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLA 79 (470)
Q Consensus 4 l~~~l~~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~ 79 (470)
+|++++++..++.++.++|+++..++ ..+++.+++++|.+. ..+++++.+-.|..++-.+|++. ..|..+..+.
T Consensus 83 lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~ 160 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLS 160 (565)
T ss_pred CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHH
Confidence 45555555555555555555554443 555666666666665 45555666666666666666665 5666666677
Q ss_pred CCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCC
Q 046000 80 SVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNT 159 (470)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 159 (470)
+|..+++.+|.+. ..|..... |+.|++|+...|.+. ..++.++.+.+|+.|++++|.+. .+|+ |..|+
T Consensus 161 ~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-------tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs 228 (565)
T KOG0472|consen 161 KLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-------TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCS 228 (565)
T ss_pred HHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-------cCChhhcchhhhHHHHhhhcccc-cCCC--CCccH
Confidence 7777777777666 44434444 777888877776655 55677788888888888998888 7775 66788
Q ss_pred CCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEc
Q 046000 160 KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239 (470)
Q Consensus 160 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 239 (470)
.|+++.++.|.|.-........+.++..|++.+|.++ +.|..+.. +..|.+||+++|.++ ..|..++++ +|++|.+
T Consensus 229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLAL 304 (565)
T ss_pred HHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhh
Confidence 8888888888887555566668888899999999888 78877765 777889999999888 577788888 8889999
Q ss_pred cccccccccCccccCCC--cccEEe-------cCCCcC--------CCcchhhhcCcccccEEEccccccccccchhhcC
Q 046000 240 SKNNFSGELSTLFTGCV--SLWFLD-------RSHNNF--------HDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLK 302 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~l~--~L~~L~-------l~~~~~--------~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 302 (470)
.+|++...-.+.+++-. -|+||. ++...- ....+.......+.+.+++++-+++......|..
T Consensus 305 eGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea 384 (565)
T KOG0472|consen 305 EGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEA 384 (565)
T ss_pred cCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHH
Confidence 88876532221111100 011110 111100 0112223334566778888888887554444433
Q ss_pred C--CCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccE
Q 046000 303 S--NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVH 380 (470)
Q Consensus 303 ~--~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~ 380 (470)
. .-+...+++.|++. ++|..+......++.+.+++|.++ .+|..+..+++|..|++++|.+.++|...+.+..|+.
T Consensus 385 ~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~ 462 (565)
T KOG0472|consen 385 AKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQT 462 (565)
T ss_pred hhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhhhcchhhhhhhhhhe
Confidence 2 23788999999997 889888888887778888888876 8899999999999999999999999999998889999
Q ss_pred EEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccc
Q 046000 381 LYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460 (470)
Q Consensus 381 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~ 460 (470)
|+++.|++. ..|+.+.....++++-.++|++....++.+.++.+|.+||+.+|.+. .+|..+++|.+|+.|+++||+|
T Consensus 463 LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 463 LNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence 999999998 88999888899999999999999877888999999999999999998 6999999999999999999999
Q ss_pred c
Q 046000 461 N 461 (470)
Q Consensus 461 ~ 461 (470)
.
T Consensus 541 r 541 (565)
T KOG0472|consen 541 R 541 (565)
T ss_pred C
Confidence 8
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-38 Score=286.11 Aligned_cols=364 Identities=23% Similarity=0.238 Sum_probs=302.0
Q ss_pred cCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEecc
Q 046000 13 NLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLS 87 (470)
Q Consensus 13 ~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 87 (470)
.-+.||+|+|+++..-. +++|+++++.+|.++ .+|......-+|+.|+|.+|.|.....+.++.++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 45679999999975544 999999999999999 678766677789999999999998888899999999999999
Q ss_pred CccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEcc
Q 046000 88 NSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLT 167 (470)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 167 (470)
.|.++ .++...+.+-.++++|++++|.++.+.. ..|..+.+|..|.+++|+++ .+|...|+++++|+.|++.
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~------~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLET------GHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeecccccccccc------ccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcc
Confidence 99998 6676678888899999999998875543 34556678999999999999 8999999899999999999
Q ss_pred ccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccc
Q 046000 168 NNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE 247 (470)
Q Consensus 168 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 247 (470)
.|.|.-.....+.++++|+.+.+..|.+. .+.+..|.++.++++|+++.|++......++-++.+|+.|++++|.|..+
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 99988666778889999999999999988 78888888899999999999998877777888999999999999999988
Q ss_pred cCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcc---hhH
Q 046000 248 LSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIP---HWI 324 (470)
Q Consensus 248 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~ 324 (470)
..+.|..+++|+.|+++.|+++......|..+..|+.|.+++|.+.......|..+++|++|+++.|.+.+.+- ..+
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 88888889999999999999998888888889999999999999988888888899999999999998763332 233
Q ss_pred HhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCc
Q 046000 325 ANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRND 387 (470)
Q Consensus 325 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 387 (470)
..+.. ++.|.+.+|++......+|..++.|++|||.+|.+-++.+..|...+|++|.+....
T Consensus 389 ~gl~~-LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSss 450 (873)
T KOG4194|consen 389 NGLPS-LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSS 450 (873)
T ss_pred ccchh-hhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccc
Confidence 33333 777777777776555566777777777777777777666666633377777665433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.3e-33 Score=256.61 Aligned_cols=364 Identities=25% Similarity=0.316 Sum_probs=274.0
Q ss_pred cccccccccccCC-CCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceec
Q 046000 32 ESFELNLAKNNIG-GHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR 110 (470)
Q Consensus 32 ~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 110 (470)
-.+-.|+++|.++ +..|.....++.++.|.|..+++. ..|+.++.+.+|++|.+++|++.... ..++.++.||++.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRSVI 84 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHHHh
Confidence 3344555555555 357888889999999999999887 78999999999999999999886333 3667777778777
Q ss_pred ccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEec
Q 046000 111 LSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDV 190 (470)
Q Consensus 111 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l 190 (470)
+..|+++... ++..+-.+..|+.||+++|+++ ++|. .+..-+++-.|++
T Consensus 85 ~R~N~LKnsG-----iP~diF~l~dLt~lDLShNqL~-EvP~-------------------------~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 85 VRDNNLKNSG-----IPTDIFRLKDLTILDLSHNQLR-EVPT-------------------------NLEYAKNSIVLNL 133 (1255)
T ss_pred hhccccccCC-----CCchhcccccceeeecchhhhh-hcch-------------------------hhhhhcCcEEEEc
Confidence 7776655322 2222333344555555555544 4443 3334445556666
Q ss_pred cCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCC-
Q 046000 191 SSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH- 269 (470)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~- 269 (470)
++|.+. .+|...+..+..|-+|++++|++. .+|+.++.+..|+.|.+++|++.......+..+.+|+.|.+++.+-+
T Consensus 134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred ccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 666666 777777777888888888888877 67777888888888899888877555555666777888888876543
Q ss_pred CcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhh
Q 046000 270 DQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQL 349 (470)
Q Consensus 270 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~ 349 (470)
+.++.++..+.+|+.++++.|.+. ..|.++..+++|+.|++++|+++ ++......+.. ++.|++++|+++ ..|.++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~-lEtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWEN-LETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhh-hhhhccccchhc-cchHHH
Confidence 356667778889999999998887 67888889999999999999887 55555555555 888888888887 788888
Q ss_pred hccCCCeEEEccCccc--cCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCc
Q 046000 350 LNHGSLQLLSVSENCL--SGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLR 427 (470)
Q Consensus 350 ~~~~~L~~L~l~~~~l--~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 427 (470)
+.++.|+.|...+|++ ..+|+.+..+.+|+.++..+|.+. ..|+.++.|..|+.|.|+.|.+. .+|+.+.-++.|+
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLK 365 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcc
Confidence 8888888888888864 567777778888888888888887 88888888888888888888887 5788888888888
Q ss_pred EEEccCcccC
Q 046000 428 VLLLRGNYLE 437 (470)
Q Consensus 428 ~L~l~~n~i~ 437 (470)
.|++..|+-.
T Consensus 366 vLDlreNpnL 375 (1255)
T KOG0444|consen 366 VLDLRENPNL 375 (1255)
T ss_pred eeeccCCcCc
Confidence 8888888743
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=2.4e-34 Score=247.71 Aligned_cols=442 Identities=25% Similarity=0.312 Sum_probs=333.0
Q ss_pred cccccccCCCcCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcC
Q 046000 3 FLGAGLHKLKNLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNL 78 (470)
Q Consensus 3 ~l~~~l~~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l 78 (470)
.+.+.+.++..|++|++++|++...++ +..+..++.++|++. ++|..++..+.|+.+++++|.+. ..|+.++.+
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~ 136 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRL 136 (565)
T ss_pred hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHH
Confidence 345667788888888888888876666 777788888888888 67788888888888888888887 677788888
Q ss_pred cCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcC
Q 046000 79 ASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNN 158 (470)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 158 (470)
-.|+.++-.+|++. ..| ..+..+.++..+.+.++++. ..++....++.|+++|...|.+. .+|+.+. .+
T Consensus 137 ~~l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~-------~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg-~l 205 (565)
T KOG0472|consen 137 LDLEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLK-------ALPENHIAMKRLKHLDCNSNLLE-TLPPELG-GL 205 (565)
T ss_pred hhhhhhhccccccc-cCc-hHHHHHHHHHHhhccccchh-------hCCHHHHHHHHHHhcccchhhhh-cCChhhc-ch
Confidence 88888888888887 445 56777888888888888766 33444445678888888888777 7777654 67
Q ss_pred CCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEE
Q 046000 159 TKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLH 238 (470)
Q Consensus 159 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 238 (470)
.+|.-|++..|++...+ .|..+..|.+++++.|.+. .+|......++++..||+.+|++. ..|..+.-+++|+.|+
T Consensus 206 ~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD 281 (565)
T ss_pred hhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc
Confidence 88888888888887433 7778888999999998888 888888877888999999999988 6788888889999999
Q ss_pred ccccccccccCccccCCCcccEEecCCCcCCCcchhhhcC-----cccccEEEccccccc---c----------ccchhh
Q 046000 239 LSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMN-----LTRLWFLYLDNNKFS---G----------KIEDGL 300 (470)
Q Consensus 239 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~l~l~~~~~~---~----------~~~~~~ 300 (470)
+++|.++ ..+..++.+ .|++|-+.+|.+...-.+.+.. ++-|+. .+.+-+++ + ......
T Consensus 282 lSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs-~~~~dglS~se~~~e~~~t~~~~~~~~~ 358 (565)
T KOG0472|consen 282 LSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS-KIKDDGLSQSEGGTETAMTLPSESFPDI 358 (565)
T ss_pred ccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH-hhccCCCCCCcccccccCCCCCCcccch
Confidence 9999887 556667777 8888888888775432222221 111111 00000110 0 011122
Q ss_pred cCCCCccEEECCCCcccCCcchhHHhhhc--cccEEEcCCCcccCCCchhhhccCCCe-EEEccCccccCccccccccCc
Q 046000 301 LKSNQLKELDMSNNMLSGHIPHWIANFSS--YLEVLLMSKNFLKGNIPMQLLNHGSLQ-LLSVSENCLSGFMTSSFSLSS 377 (470)
Q Consensus 301 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~ 377 (470)
....+.+.|++++-.++ .+|...+...+ -+..+++++|++. .+|..+..+..+. .+.+++|.+.-++.....+++
T Consensus 359 ~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~k 436 (565)
T KOG0472|consen 359 YAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQK 436 (565)
T ss_pred hhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhc
Confidence 33457788888888887 66765555443 3778899999987 7777766655554 456677776655555557899
Q ss_pred ccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccC
Q 046000 378 LVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSH 457 (470)
Q Consensus 378 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~ 457 (470)
|..|++++|.+. .+|..+..+-.|+.|+++.|.+. .+|..+..+..++.+-.++|++....+..+.+|..|.+||+.+
T Consensus 437 Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 437 LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred ceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 999999999988 56777777888999999999988 6888888888889888899999988888899999999999999
Q ss_pred cccccccCCCcc
Q 046000 458 NRINGSIPSCFT 469 (470)
Q Consensus 458 n~~~~~~p~~~~ 469 (470)
|.+. .+|..+.
T Consensus 515 Ndlq-~IPp~Lg 525 (565)
T KOG0472|consen 515 NDLQ-QIPPILG 525 (565)
T ss_pred Cchh-hCChhhc
Confidence 9988 6666554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=8.6e-33 Score=261.62 Aligned_cols=427 Identities=28% Similarity=0.327 Sum_probs=306.8
Q ss_pred cccCCCcCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCc
Q 046000 7 GLHKLKNLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVE 82 (470)
Q Consensus 7 ~l~~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 82 (470)
+.++.-+|++||+++|++...+. +..|+.|+++.|.+. ..|.+.+++.+|+++.|..|.+. ..|+.+..+.+|+
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQ 117 (1081)
T ss_pred HhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhccc
Confidence 34455569999999999986666 889999999999998 56788999999999999999887 8999999999999
Q ss_pred EEeccCccCcCccChhhhccccccceecccCCCCccccccc--------------cCCCCcccccCcccEEEccCccccC
Q 046000 83 YLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKT--------------ENFLPTFQLKHDLKYLDLSHNNLAG 148 (470)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~~~~~L~~L~l~~~~i~~ 148 (470)
+|+++.|.+. ..| ..+..+..+..+..++| ........ ..+...+..+.+ .+++.+|.+.
T Consensus 118 ~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N-~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~- 191 (1081)
T KOG0618|consen 118 YLDLSFNHFG-PIP-LVIEVLTAEEELAASNN-EKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME- 191 (1081)
T ss_pred ccccchhccC-CCc-hhHHhhhHHHHHhhhcc-hhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-
Confidence 9999999987 444 35555555555555554 11000000 011111212111 3666666544
Q ss_pred ccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhh
Q 046000 149 DFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSI 228 (470)
Q Consensus 149 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 228 (470)
.+ ....+++++.+....+++..... .-++++.|+.+.|.+....+. ....+|++++++.+.+. .+|+++
T Consensus 192 ~~---dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~-~lp~wi 260 (1081)
T KOG0618|consen 192 VL---DLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLS-NLPEWI 260 (1081)
T ss_pred hh---hhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc---cccccceeeecchhhhh-cchHHH
Confidence 11 13345566666666555542111 224677777777776622211 12457888888888887 566888
Q ss_pred cCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCC-Ccc
Q 046000 229 GDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN-QLK 307 (470)
Q Consensus 229 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~ 307 (470)
..+++|+.+++..|.+. ..+..+....+|+++.+..|.+.. .+........|+.|++..|++....+..+.... +++
T Consensus 261 ~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~y-ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~ 338 (1081)
T KOG0618|consen 261 GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEY-IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLN 338 (1081)
T ss_pred HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhh-CCCcccccceeeeeeehhccccccchHHHhhhhHHHH
Confidence 88888888888888875 444445556777777777777654 333445578888888888888754444443333 367
Q ss_pred EEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCC
Q 046000 308 ELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRN 386 (470)
Q Consensus 308 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~ 386 (470)
.+..+.+++. ..|..-....+.++.|.+.+|.+++.....+.+...|+.|++++|.+..+|...+ +++.|++|+++||
T Consensus 339 ~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN 417 (1081)
T KOG0618|consen 339 TLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN 417 (1081)
T ss_pred HHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence 7777777765 4443333344448889999999998888889999999999999999999888777 8999999999999
Q ss_pred cccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc-ccchhhccCCCCCeEEccCcc
Q 046000 387 DLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG-PISNQFCQLRRLGVMDLSHNR 459 (470)
Q Consensus 387 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~l~l~~n~ 459 (470)
+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++. .++..+.. |.|++||++||.
T Consensus 418 kL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 418 KLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence 998 66788999999999999999998 566 68899999999999999986 44444433 899999999997
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.1e-31 Score=243.99 Aligned_cols=372 Identities=21% Similarity=0.296 Sum_probs=299.5
Q ss_pred hcCCCCcEEEccCCccc-cccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcc
Q 046000 52 NNMTRLKVLDTSFNQLS-GSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTF 130 (470)
Q Consensus 52 ~~~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 130 (470)
+-+|-.+-+|+++|.+. +.+|.....++.++.|.|...++. ..| ..++.+.+|++|.+..|++..+ ...+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~~v-------hGEL 74 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLISV-------HGEL 74 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhHhh-------hhhh
Confidence 34556677889999887 568888899999999999988876 555 6777777777777776654311 1112
Q ss_pred cccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCC-ccCCCCCCCCcccEEeccCCcccCCCCcchhhhhcc
Q 046000 131 QLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTG-NLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQK 209 (470)
Q Consensus 131 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 209 (470)
. .++.|+.+.+..|++.. .++..+..+.-|+.|+++.|++. +.|..... -.+
T Consensus 75 s-------------------------~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn 127 (1255)
T KOG0444|consen 75 S-------------------------DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKN 127 (1255)
T ss_pred c-------------------------cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcC
Confidence 2 34455555555554432 23455566777888888888887 77877654 578
Q ss_pred CceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccc
Q 046000 210 LLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN 289 (470)
Q Consensus 210 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 289 (470)
+-.|.+++|+|..+....|.++..|-+|++++|.+. ..|..+..+..|+.|.+++|.+.-.....+..+++|+.|.+++
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 889999999998554456778999999999999987 5666678899999999999988655556677788888999998
Q ss_pred cccc-cccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCc
Q 046000 290 NKFS-GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF 368 (470)
Q Consensus 290 ~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 368 (470)
.+-+ .-.|..+..+.+|+.++++.|.+. ..|+.+..+.. ++.|++++|.++ ..........+|++|+++.|+++.+
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~-LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRN-LRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhh-hheeccCcCcee-eeeccHHHHhhhhhhccccchhccc
Confidence 7543 346777888999999999999998 89999998888 999999999998 5555556677999999999999999
Q ss_pred cccccccCcccEEEccCCcccc-cCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccC
Q 046000 369 MTSSFSLSSLVHLYVQRNDLSG-TIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQL 447 (470)
Q Consensus 369 ~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l 447 (470)
|.....++.|+.|++.+|++.- -+|..++.+.+|+.+...+|.+. ..|+.+..|+.|+.|.|++|.+- .+|+.+.-+
T Consensus 284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL 361 (1255)
T KOG0444|consen 284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLL 361 (1255)
T ss_pred hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhc
Confidence 9999999999999999999863 36888999999999999999998 89999999999999999999987 599999999
Q ss_pred CCCCeEEccCcccccccCC
Q 046000 448 RRLGVMDLSHNRINGSIPS 466 (470)
Q Consensus 448 ~~L~~l~l~~n~~~~~~p~ 466 (470)
+.|++||+.+|+-. ..|.
T Consensus 362 ~~l~vLDlreNpnL-VMPP 379 (1255)
T KOG0444|consen 362 PDLKVLDLRENPNL-VMPP 379 (1255)
T ss_pred CCcceeeccCCcCc-cCCC
Confidence 99999999999876 5553
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=1e-30 Score=247.67 Aligned_cols=430 Identities=24% Similarity=0.266 Sum_probs=261.1
Q ss_pred cccccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhc
Q 046000 3 FLGAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVN 77 (470)
Q Consensus 3 ~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 77 (470)
.+|.-+-.-..++.|++++|-+...+- ...|..|++++|.+. ..|..+..+.+|+.|+++.|.|. ..|.+..+
T Consensus 12 ~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~ 89 (1081)
T KOG0618|consen 12 LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSN 89 (1081)
T ss_pred ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhh
Confidence 355555555557777777775543222 445777777777777 45666777777777777777776 66677777
Q ss_pred CcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCc-------------
Q 046000 78 LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHN------------- 144 (470)
Q Consensus 78 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------- 144 (470)
+.+|++|.|.+|.+. ..| ..++.+++|+.|+++.|.+... +..+..+..++++..++|
T Consensus 90 ~~~l~~lnL~~n~l~-~lP-~~~~~lknl~~LdlS~N~f~~~-------Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~ 160 (1081)
T KOG0618|consen 90 MRNLQYLNLKNNRLQ-SLP-ASISELKNLQYLDLSFNHFGPI-------PLVIEVLTAEEELAASNNEKIQRLGQTSIKK 160 (1081)
T ss_pred hhcchhheeccchhh-cCc-hhHHhhhcccccccchhccCCC-------chhHHhhhHHHHHhhhcchhhhhhccccchh
Confidence 777777777777765 444 5677777777777777766522 233333333444444444
Q ss_pred ------cccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCC
Q 046000 145 ------NLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANN 218 (470)
Q Consensus 145 ------~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 218 (470)
.+.+.++.+.- .+.. .+++++|.+. ...+..+.+|+.+....+.+. .+. ..-++++.|+.+.|
T Consensus 161 ~~l~~n~l~~~~~~~i~-~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n 229 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIY-NLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHN 229 (1081)
T ss_pred hhhhhhhcccchhcchh-hhhe--eeecccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccC
Confidence 22222221110 1111 2444444333 122223333444433333332 110 01234555555555
Q ss_pred ccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccch
Q 046000 219 RFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIED 298 (470)
Q Consensus 219 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 298 (470)
.+....+ -..-.+++.++++.+.+.... .++..+.+|+.++...|.+. ..+..+...++|+.+.+..|.+. ..+.
T Consensus 230 ~l~~~~~--~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~ 304 (1081)
T KOG0618|consen 230 PLTTLDV--HPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPP 304 (1081)
T ss_pred cceeecc--ccccccceeeecchhhhhcch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCC
Confidence 5441111 112235666667666666433 66666777777777777663 34445555666677766666666 3444
Q ss_pred hhcCCCCccEEECCCCcccCCcchhHHhhhc-cccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccC
Q 046000 299 GLLKSNQLKELDMSNNMLSGHIPHWIANFSS-YLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLS 376 (470)
Q Consensus 299 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~ 376 (470)
...+.+.|++|++..|.+. .+|+.+..... +++.+..+.+.+.......=...+.|+.|.+.+|.+++.....+ .++
T Consensus 305 ~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~ 383 (1081)
T KOG0618|consen 305 FLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFK 383 (1081)
T ss_pred cccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcccc
Confidence 4556777778888777776 55554443332 25566666666542221111235567888888888877655554 778
Q ss_pred cccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEcc
Q 046000 377 SLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLS 456 (470)
Q Consensus 377 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~ 456 (470)
+|+.|+|++|++.......+..++.|+.|++|+|+++ .+|+.+.+|..|++|...+|++. ..| .+..+++|+++|++
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence 8888888888887555567778888888888888888 56788888888888888888887 566 77788999999999
Q ss_pred Ccccccc
Q 046000 457 HNRINGS 463 (470)
Q Consensus 457 ~n~~~~~ 463 (470)
-|+++..
T Consensus 461 ~N~L~~~ 467 (1081)
T KOG0618|consen 461 CNNLSEV 467 (1081)
T ss_pred cchhhhh
Confidence 8888743
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.2e-22 Score=213.88 Aligned_cols=347 Identities=19% Similarity=0.178 Sum_probs=238.5
Q ss_pred hhhccccccceecccCCCCccccccccCCCCccccc-CcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccC
Q 046000 98 SSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLK-HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQ 176 (470)
Q Consensus 98 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 176 (470)
..|..|.+|+.|.+..+...........++..+..+ ++|+.|.+.++.+. .+|..+ ...+|+.|++.++.+.. .+
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~-L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK-LW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc-cc
Confidence 456777777777775543221111111223333333 46888888888776 777654 46788888888887763 44
Q ss_pred CCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCC
Q 046000 177 LPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCV 256 (470)
Q Consensus 177 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 256 (470)
..+..+++|+.++++++.....+|. ...+++|+.|++++|.....+|..+..+++|+.|++++|......+..+ .++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 5566788888888887765546664 2336788888888887665778888888888888888875444444433 578
Q ss_pred cccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCccc------CCcchhHHhhhcc
Q 046000 257 SLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLS------GHIPHWIANFSSY 330 (470)
Q Consensus 257 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~~ 330 (470)
+|+.|++++|......+. ...+|+.|+++++.+.. .+..+ .+++|+.|.+.++... ...+......+++
T Consensus 705 sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 888888888765433222 24578888888887763 33332 5677888877764321 0112222333455
Q ss_pred ccEEEcCCCcccCCCchhhhccCCCeEEEccCcc-ccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCC
Q 046000 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENC-LSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD 409 (470)
Q Consensus 331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 409 (470)
++.|++++|.....+|..+..+++|+.|++++|. +..+|... .+++|++|++++|......|.. .++|+.|++++
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~ 855 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR 855 (1153)
T ss_pred chheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCC
Confidence 8889998887666788888889999999998874 55555443 6788999999988655444432 36788999999
Q ss_pred ccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000 410 NGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461 (470)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~ 461 (470)
|.+. .+|..+..+++|+.|++++|+--..++..+..+++|+.+++++|.-.
T Consensus 856 n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 856 TGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 9887 57778888999999999887655567777888888999998888643
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.91 E-value=7e-26 Score=195.32 Aligned_cols=416 Identities=19% Similarity=0.206 Sum_probs=274.2
Q ss_pred eccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccC-ccCcCc
Q 046000 18 DLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSN-SYFEGT 94 (470)
Q Consensus 18 ~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~ 94 (470)
|.++-.+...+. -+.-+++.|..|.|+.+.+.+|+.+++|+.|||++|.|+.+.|++|..+++|.+|-+.+ |+|+ .
T Consensus 52 dCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-D 130 (498)
T ss_pred EccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-h
Confidence 334444444444 55667899999999999999999999999999999999999999999999988877766 8888 7
Q ss_pred cChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccC-C
Q 046000 95 FPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT-G 173 (470)
Q Consensus 95 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~-~ 173 (470)
.+...|.++.+++.|.+..+++...... .+..++++..|.+.+|.+. .++...+..+..++.+.+..+... .
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~------al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQD------ALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHH------HHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccc
Confidence 7888999999999999999887765543 3555677899999999888 777766777788888877665421 0
Q ss_pred -----------ccCCCCCCCCcccEEeccCCcccCCCCcchhh-hhccCceeeccCCccCCCCc-hhhcCCCCccEEEcc
Q 046000 174 -----------NLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGI-ILQKLLYIDMANNRFEGNLP-SSIGDMKTLTFLHLS 240 (470)
Q Consensus 174 -----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~ 240 (470)
..+..++...-..-..+.+..+. ..+...+. ....+..-..+.+.....-| ..|..+++|+.|+++
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 01111111111111222222222 11221111 11122111122222222222 458889999999999
Q ss_pred ccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCc
Q 046000 241 KNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHI 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 320 (470)
+|.++.+...+|.+...+++|.+.+|++.......|..+..|+.|++.+|+|+...+..|....+|.+|.+-.|++....
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 99999888889999999999999999988777778888999999999999999888888888999999999888765222
Q ss_pred -chhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccc-------------ccccCcccEEEccCC
Q 046000 321 -PHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTS-------------SFSLSSLVHLYVQRN 386 (470)
Q Consensus 321 -~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-------------~~~~~~L~~L~l~~~ 386 (470)
..|+..|...-. ..+ ..+. ...-.++.+.+++..+.+.... ...++-+.+..=..|
T Consensus 363 ~l~wl~~Wlr~~~---~~~-----~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSn 432 (498)
T KOG4237|consen 363 RLAWLGEWLRKKS---VVG-----NPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSN 432 (498)
T ss_pred chHHHHHHHhhCC---CCC-----CCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcc
Confidence 234444432111 111 1111 1122344455544433222111 112444444433333
Q ss_pred cccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCc
Q 046000 387 DLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHN 458 (470)
Q Consensus 387 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n 458 (470)
+....+|..+. ..-+.+++.+|.++ .+|.. .+.+| .+++++|++...--..|.++.+|.+|-|+.|
T Consensus 433 k~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 433 KLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 33334444432 34667888888888 45544 56677 7889999888666678888888888887765
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.1e-22 Score=210.62 Aligned_cols=341 Identities=18% Similarity=0.150 Sum_probs=183.9
Q ss_pred chHhhhcCCCCcEEEccCCc------cccccchhhhcCc-CCcEEeccCccCcCccChhhhccccccceecccCCCCccc
Q 046000 47 LLDCLNNMTRLKVLDTSFNQ------LSGSLPSVIVNLA-SVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNML 119 (470)
Q Consensus 47 ~~~~~~~~~~L~~L~l~~~~------i~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 119 (470)
.+.+|.++++|+.|.+.++. +...+|..+..++ +|+.|.+.++++. .+|. .+ ...+|+.|++.++.+...
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCcccccc
Confidence 34567777777777775542 2223455555553 4777777777665 4442 22 356677777776655422
Q ss_pred cccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCC
Q 046000 120 QLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKL 199 (470)
Q Consensus 120 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 199 (470)
...+..+++|+.++++++...+.+|. +..+++|+.|++++|......+..+..+++|+.|++++|...+.+
T Consensus 627 -------~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 627 -------WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred -------ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc
Confidence 22344556677777776654335554 445667777777766544445556666677777777776544455
Q ss_pred CcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCC-------cc
Q 046000 200 PQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHD-------QI 272 (470)
Q Consensus 200 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------~~ 272 (470)
|... .++.|++|++++|......|.. ..+|+.|+++++.+... +..+ .+++|++|.+.++.... ..
T Consensus 698 p~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~l-P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 698 PTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEF-PSNL-RLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred CCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccc-cccc-cccccccccccccchhhccccccccc
Confidence 5543 3566777777766543333321 34566677766665432 2222 35556666555432111 00
Q ss_pred hhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhcc
Q 046000 273 FPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH 352 (470)
Q Consensus 273 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~ 352 (470)
......+++|+.|++++|......+..+..+++|+.|++++|...+.+|... .+ .+++.|++++|......|.. .
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L-~sL~~L~Ls~c~~L~~~p~~---~ 845 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL-ESLESLDLSGCSRLRTFPDI---S 845 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc-cccCEEECCCCCcccccccc---c
Confidence 1111223556666666655444455555666666666666654333444433 22 23566666665433233321 2
Q ss_pred CCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCcc
Q 046000 353 GSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNG 411 (470)
Q Consensus 353 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~ 411 (470)
++|+.|++++|.++.+|.....+++|+.|++.+|.-...++..+..+++|+.+++++|.
T Consensus 846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 45666666666666555544455666666666544332344445555666666666554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=7e-20 Score=179.46 Aligned_cols=261 Identities=23% Similarity=0.216 Sum_probs=125.2
Q ss_pred CcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcc
Q 046000 161 LEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLS 240 (470)
Q Consensus 161 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 240 (470)
-..|++++++++. ++..+. ++|+.|.+.+|.++ .+|.. +++|++|++++|.+. .+|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 3445555555442 122221 24555555555554 34431 345555555555554 22321 2345555555
Q ss_pred ccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCc
Q 046000 241 KNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHI 320 (470)
Q Consensus 241 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 320 (470)
+|.+.... .. ..+|+.|++++|++..... ..++|+.|++++|.+.+. +. ...+|+.|.+++|.+. .+
T Consensus 271 ~N~L~~Lp-~l---p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 271 SNPLTHLP-AL---PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-SL 337 (788)
T ss_pred CCchhhhh-hc---hhhcCEEECcCCccccccc----cccccceeECCCCccccC-CC---CcccccccccccCccc-cc
Confidence 55544221 11 1345555555555543211 124555555555555432 11 1234555555555554 33
Q ss_pred chhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCC
Q 046000 321 PHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSS 400 (470)
Q Consensus 321 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 400 (470)
|. .+..|+.|++++|.++ .+|.. ..+|+.|++++|.+..++.. .++|+.|++++|++.. +|.. .+
T Consensus 338 P~----lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s 402 (788)
T PRK15387 338 PT----LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL---PS 402 (788)
T ss_pred cc----cccccceEecCCCccC-CCCCC---CcccceehhhccccccCccc---ccccceEEecCCcccC-CCCc---cc
Confidence 32 2223556666666555 23321 23455556666665554432 2456666666666552 2221 24
Q ss_pred CccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCC
Q 046000 401 KLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPS 466 (470)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~ 466 (470)
+|+.|++++|++.. +|.. +.+|+.|++++|+++ .+|..+.+++.|+.|++++|++++.+|.
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 56666666666553 3332 234555666666665 4555566666666666666666655544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=1.3e-22 Score=175.35 Aligned_cols=254 Identities=22% Similarity=0.228 Sum_probs=165.3
Q ss_pred CcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccc-cccccccCccccCCCcccEE
Q 046000 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSK-NNFSGELSTLFTGCVSLWFL 261 (470)
Q Consensus 183 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 261 (470)
+.-.++++..|.++ .+|...|..+++|+.|+++.|.|..+.|.+|.+++++..|.+.+ |.|++.....|.++..++.|
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 34566777777777 77777777777777777777777777777777777777766655 77777777777777777777
Q ss_pred ecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCc-chhHHh--------------
Q 046000 262 DRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHI-PHWIAN-------------- 326 (470)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~-------------- 326 (470)
.+..|++.......|..++++..|.+.+|.+.......+..+..++.+.+..|++.... -.|.+.
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 77777777666677777777777777777776555556667777777776666522000 000000
Q ss_pred ---------------------hhccccEEEcCCCcccCCCc-hhhhccCCCeEEEccCccccCcccccc-ccCcccEEEc
Q 046000 327 ---------------------FSSYLEVLLMSKNFLKGNIP-MQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYV 383 (470)
Q Consensus 327 ---------------------~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l 383 (470)
..+.+..--.+.+......| ..|..+++|+.|++++|+++.+....| ....+++|++
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 00000000111221222222 346667777777777777777766666 5677777777
Q ss_pred cCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000 384 QRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE 437 (470)
Q Consensus 384 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~ 437 (470)
..|++.......|.++.+|++|+|.+|+|+...|..|....+|.+|++-.|++-
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 777776555566777777777777777777777777777777777777777664
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=2.4e-19 Score=175.67 Aligned_cols=267 Identities=24% Similarity=0.276 Sum_probs=198.4
Q ss_pred CcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCcee
Q 046000 134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI 213 (470)
Q Consensus 134 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 213 (470)
..-..|+++++.++ .+|..+. ++++.|++.+|+++.... .+++|++|++++|.++ .+|.. .++|++|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPVL----PPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccC-cccCc----cccccee
Confidence 34567888888887 7777553 478888998888875332 2578899999998887 66642 4688899
Q ss_pred eccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccc
Q 046000 214 DMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS 293 (470)
Q Consensus 214 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 293 (470)
++.+|.+. .+|.. ..+|+.|++++|.+.... . ..++|++|++++|.+..... ....|+.|++++|.+.
T Consensus 268 ~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP-~---~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 268 SIFSNPLT-HLPAL---PSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLT 335 (788)
T ss_pred eccCCchh-hhhhc---hhhcCEEECcCCcccccc-c---cccccceeECCCCccccCCC----CcccccccccccCccc
Confidence 99888876 34432 356888899998877432 2 24679999999988875321 1346788888888887
Q ss_pred cccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc
Q 046000 294 GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF 373 (470)
Q Consensus 294 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 373 (470)
. .+. ...+|+.|++++|++. .+|.. +..++.|++++|.+. .+|.. ..+|+.|++++|.+..++..
T Consensus 336 ~-LP~---lp~~Lq~LdLS~N~Ls-~LP~l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l-- 400 (788)
T PRK15387 336 S-LPT---LPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL-- 400 (788)
T ss_pred c-ccc---cccccceEecCCCccC-CCCCC----Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc--
Confidence 4 332 2357999999999987 55542 344888899999887 45543 35799999999999877653
Q ss_pred ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhcc
Q 046000 374 SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQ 446 (470)
Q Consensus 374 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 446 (470)
.++|+.|++++|.+.. +|.. ..+|+.|++++|+++ .+|+.+..+++|+.|+|++|++++..+..+..
T Consensus 401 -~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 401 -PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred -ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 4689999999999984 4543 357889999999998 67888999999999999999999876666533
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=9.5e-20 Score=167.51 Aligned_cols=273 Identities=23% Similarity=0.226 Sum_probs=165.7
Q ss_pred EeccCCcccCCCCcchhhhhccCceeeccCCccCC----CCchhhcCCCCccEEEcccccccc------ccCccccCCCc
Q 046000 188 LDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEG----NLPSSIGDMKTLTFLHLSKNNFSG------ELSTLFTGCVS 257 (470)
Q Consensus 188 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~~~~l~~ 257 (470)
|+++.+.+.+..-...+..+..|+.++++++.+.. .++..+...+.++.++++++.+.. .....+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 33444444322223333345556666666665532 123344455666666666665441 11234455667
Q ss_pred ccEEecCCCcCCCcchhhhcCccc---ccEEEccccccccc----cchhhcCC-CCccEEECCCCcccCCcchhHHhhh-
Q 046000 258 LWFLDRSHNNFHDQIFPKYMNLTR---LWFLYLDNNKFSGK----IEDGLLKS-NQLKELDMSNNMLSGHIPHWIANFS- 328 (470)
Q Consensus 258 L~~L~l~~~~~~~~~~~~~~~~~~---L~~l~l~~~~~~~~----~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~- 328 (470)
|+.|++++|.+.......+..+.+ |+.+++++|.+.+. ....+..+ ++|+++++++|.+.+.....+....
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 777777777766544444443333 77777777766522 12234455 7788888888877643333222221
Q ss_pred --ccccEEEcCCCcccCC----CchhhhccCCCeEEEccCccccCcccccc-----ccCcccEEEccCCcccccCccchh
Q 046000 329 --SYLEVLLMSKNFLKGN----IPMQLLNHGSLQLLSVSENCLSGFMTSSF-----SLSSLVHLYVQRNDLSGTIPNALF 397 (470)
Q Consensus 329 --~~l~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~l~ 397 (470)
..+++|++++|.+.+. ++..+...++|+.|++++|.+.+.....+ .+++|++|++++|.+.+.....+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 2378888888877632 23334556688899998888765443221 578899999999988753333222
Q ss_pred -----cCCCccEEEcCCcccee----ecchhhhcCCCCcEEEccCcccCcc----cchhhccC-CCCCeEEccCccc
Q 046000 398 -----RSSKLMTLDLRDNGFSG----IISDQINESSNLRVLLLRGNYLEGP----ISNQFCQL-RRLGVMDLSHNRI 460 (470)
Q Consensus 398 -----~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~i~~~----~~~~~~~l-~~L~~l~l~~n~~ 460 (470)
..+.|+.|++++|.+++ .+...+..+++|+.+++++|.+.+. ....+... +.|+.+++.+|++
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 23789999999998862 2334566678899999999999854 44445455 7888999988874
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=2.3e-17 Score=162.90 Aligned_cols=246 Identities=20% Similarity=0.265 Sum_probs=136.3
Q ss_pred CCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEc
Q 046000 160 KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239 (470)
Q Consensus 160 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 239 (470)
+...|++++++++... ..+ .++++.|++++|.+. .+|...+ ++|+.|++++|.+. .+|..+. ++|+.|++
T Consensus 179 ~~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLTTIP-ACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 4566777766665322 112 245777777777766 5665442 46777777777766 3444332 35777777
Q ss_pred cccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCC
Q 046000 240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGH 319 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 319 (470)
++|.+... +..+ ..+|+.|++++|.+.. ++..+. ++|+.|++++|++... +..+ .++|+.|++++|.+. .
T Consensus 249 s~N~L~~L-P~~l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N~Lt-~ 318 (754)
T PRK15370 249 SINRITEL-PERL--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSNSLT-A 318 (754)
T ss_pred cCCccCcC-ChhH--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccC-cccc--hhhHHHHHhcCCccc-c
Confidence 77766532 3222 1356777777666653 222222 4666677766666532 2211 235666666666665 3
Q ss_pred cchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcC
Q 046000 320 IPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRS 399 (470)
Q Consensus 320 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 399 (470)
+|..+ +.+++.|++++|.++ .+|..+ +++|+.|++++|.+..++... .++|++|++++|.+. .+|..+.
T Consensus 319 LP~~l---~~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 319 LPETL---PPGLKTLEAGENALT-SLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred CCccc---cccceeccccCCccc-cCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCC-CCCHhHH--
Confidence 44322 233666666666665 344443 356666666666666554432 246666666666666 3343332
Q ss_pred CCccEEEcCCccceeecchhh----hcCCCCcEEEccCcccC
Q 046000 400 SKLMTLDLRDNGFSGIISDQI----NESSNLRVLLLRGNYLE 437 (470)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~~----~~~~~L~~L~l~~n~i~ 437 (470)
.+|+.|++++|++. .+|+.+ ..++++..+++.+|++.
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 35666666666665 333332 22356666666666665
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.2e-18 Score=160.20 Aligned_cols=280 Identities=24% Similarity=0.276 Sum_probs=159.2
Q ss_pred EEEccCccccCccchHhhhcCCCCcEEEccccccCCc----cCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCcee
Q 046000 138 YLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGN----LQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI 213 (470)
Q Consensus 138 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 213 (470)
.|++.++.+.+.--...+..+..++.++++++.++.. ....+...+.+++++++++.+.. .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~---------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL---------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence 3556666665333334455666678888877776431 12223344556666666655431 11110
Q ss_pred eccCCccCCCCchhhcCCCCccEEEccccccccccCccccCC---CcccEEecCCCcCCCcc----hhhhcCc-ccccEE
Q 046000 214 DMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGC---VSLWFLDRSHNNFHDQI----FPKYMNL-TRLWFL 285 (470)
Q Consensus 214 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~----~~~~~~~-~~L~~l 285 (470)
...+..+..+++|+.|++++|.+....+..+..+ ++|++|++++|.+.+.. ...+..+ ++|+.+
T Consensus 71 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 71 --------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142 (319)
T ss_pred --------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence 0112233444455555555554443222222222 23666666665554311 1223344 666666
Q ss_pred Eccccccccc----cchhhcCCCCccEEECCCCcccCCcchhHHhhh---ccccEEEcCCCcccCC----CchhhhccCC
Q 046000 286 YLDNNKFSGK----IEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS---SYLEVLLMSKNFLKGN----IPMQLLNHGS 354 (470)
Q Consensus 286 ~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~l~~L~l~~~~~~~~----~~~~~~~~~~ 354 (470)
++++|.+.+. ....+..+++|++|++++|.+.+.....+.... ..++.|++++|.+.+. +...+..+++
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 6666665522 223344556777777777776643222222111 2477777777776532 2344556788
Q ss_pred CeEEEccCccccCcccccc------ccCcccEEEccCCccccc----CccchhcCCCccEEEcCCccceee----cchhh
Q 046000 355 LQLLSVSENCLSGFMTSSF------SLSSLVHLYVQRNDLSGT----IPNALFRSSKLMTLDLRDNGFSGI----ISDQI 420 (470)
Q Consensus 355 L~~L~l~~~~l~~~~~~~~------~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~ 420 (470)
|++|++++|.+.+.....+ ..+.|++|++++|.+++. ....+..+++|+.+++++|.+... ....+
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 9999999998876433222 137999999999998632 234556668999999999999754 34444
Q ss_pred hcC-CCCcEEEccCccc
Q 046000 421 NES-SNLRVLLLRGNYL 436 (470)
Q Consensus 421 ~~~-~~L~~L~l~~n~i 436 (470)
... +.|+++++.+|++
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 303 LEPGNELESLWVKDDSF 319 (319)
T ss_pred hhcCCchhhcccCCCCC
Confidence 445 7899999988864
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=4.3e-17 Score=161.05 Aligned_cols=246 Identities=24% Similarity=0.319 Sum_probs=162.6
Q ss_pred cccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceee
Q 046000 135 DLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID 214 (470)
Q Consensus 135 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 214 (470)
+...|+++++.++ .+|..+ .+.++.|++++|+++.... . .+.+|+.|++++|.+. .+|..+ .+.|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~-~--l~~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPE-N--LQGNIKTLYANSNQLT-SIPATL---PDTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCCh-h--hccCCCEEECCCCccc-cCChhh---hccccEEE
Confidence 4566777777666 556533 2457777777777664322 1 2246777777777766 555543 24677777
Q ss_pred ccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccccccc
Q 046000 215 MANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG 294 (470)
Q Consensus 215 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 294 (470)
+++|.+. .+|..+. .+|+.|++++|.+.. .+..+ .++|+.|++++|.+.... ..+ .++|+.|++++|.+..
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTA 318 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCcccc
Confidence 7777776 4555443 467777777777763 33322 246788888887776422 222 2467778888887774
Q ss_pred ccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccc
Q 046000 295 KIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFS 374 (470)
Q Consensus 295 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 374 (470)
. +..+ .++|+.|++++|.+. .+|..+ +++++.|++++|.+. .+|..+ .++|+.|++++|.+..++...
T Consensus 319 L-P~~l--~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l-- 386 (754)
T PRK15370 319 L-PETL--PPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENL-- 386 (754)
T ss_pred C-Cccc--cccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhH--
Confidence 3 3222 367888888888877 466543 345888999988886 566655 468999999999988877654
Q ss_pred cCcccEEEccCCcccccCccch----hcCCCccEEEcCCccce
Q 046000 375 LSSLVHLYVQRNDLSGTIPNAL----FRSSKLMTLDLRDNGFS 413 (470)
Q Consensus 375 ~~~L~~L~l~~~~l~~~~~~~l----~~~~~L~~L~l~~n~l~ 413 (470)
...|+.|++++|++. .+|..+ ..++.+..+++.+|++.
T Consensus 387 ~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 387 PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 247889999999987 444433 34578889999999987
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.6e-17 Score=127.56 Aligned_cols=160 Identities=29% Similarity=0.449 Sum_probs=87.9
Q ss_pred CCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEE
Q 046000 303 SNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLY 382 (470)
Q Consensus 303 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~ 382 (470)
+..++.|.+++|+++ .+|..++.+.. ++.|++.+|++. ..|..+.+++.|+.|+++-|.+...|.....+|.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~n-levln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKN-LEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhh-hhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 344445555555554 44444554444 555555555554 455555555555555555555555555544555555555
Q ss_pred ccCCccc-ccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000 383 VQRNDLS-GTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461 (470)
Q Consensus 383 l~~~~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~ 461 (470)
+..|.+. ...|..|..+..|+.|++++|.+. .+|..++.+++|+.|.+++|.+- .+|..++.+.+|+.|.+++|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 5555543 224455555566666666666655 45555566666666666666554 35555666666666666666655
Q ss_pred cccCCCc
Q 046000 462 GSIPSCF 468 (470)
Q Consensus 462 ~~~p~~~ 468 (470)
.+|.++
T Consensus 187 -vlppel 192 (264)
T KOG0617|consen 187 -VLPPEL 192 (264)
T ss_pred -ecChhh
Confidence 555443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=4.5e-16 Score=119.63 Aligned_cols=163 Identities=26% Similarity=0.432 Sum_probs=126.6
Q ss_pred CcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeE
Q 046000 278 NLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQL 357 (470)
Q Consensus 278 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~ 357 (470)
++..++.+.+++|+++ ..+..+..+.+|+.|.+.+|.+. ++|..+..+++ ++.|+++.|++. ..|..|++++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~k-lr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPK-LRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchh-hhheecchhhhh-cCccccCCCchhhh
Confidence 3456667777777777 45556777888888888888887 78888888877 888888888876 77888888888888
Q ss_pred EEccCccccC--ccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcc
Q 046000 358 LSVSENCLSG--FMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY 435 (470)
Q Consensus 358 L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 435 (470)
||+++|.+.+ +|...|.+..|+.|++..|.+. .+|..+..+.+|+.|.+.+|.+. ..|..++.++.|++|.+.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 8888887653 4555557888888888888887 77777888888888888888887 577778888888888888888
Q ss_pred cCcccchhhccC
Q 046000 436 LEGPISNQFCQL 447 (470)
Q Consensus 436 i~~~~~~~~~~l 447 (470)
++ .+|-.++.+
T Consensus 185 l~-vlppel~~l 195 (264)
T KOG0617|consen 185 LT-VLPPELANL 195 (264)
T ss_pred ee-ecChhhhhh
Confidence 87 455444443
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=2.3e-13 Score=116.92 Aligned_cols=230 Identities=23% Similarity=0.233 Sum_probs=121.8
Q ss_pred hccCceeeccCCccCC----CCchhhcCCCCccEEEccccccc---cc-------cCccccCCCcccEEecCCCcCCCcc
Q 046000 207 LQKLLYIDMANNRFEG----NLPSSIGDMKTLTFLHLSKNNFS---GE-------LSTLFTGCVSLWFLDRSHNNFHDQI 272 (470)
Q Consensus 207 ~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~---~~-------~~~~~~~l~~L~~L~l~~~~~~~~~ 272 (470)
...++++++++|.+.. .+...+...+.|+..++++-.-. .. ...++.++++|+++++|+|-+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4578888888888762 23344566677887777764221 11 1234556778888888888776644
Q ss_pred hhh----hcCcccccEEEccccccccccchh-------------hcCCCCccEEECCCCcccCCcchhHHhhh---cccc
Q 046000 273 FPK----YMNLTRLWFLYLDNNKFSGKIEDG-------------LLKSNQLKELDMSNNMLSGHIPHWIANFS---SYLE 332 (470)
Q Consensus 273 ~~~----~~~~~~L~~l~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~l~ 332 (470)
... +.++..|+.|++.+|.+....... ...-+.|+.+...+|++.......++... +.++
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 443 346778888888888776332222 22335667777776666533333332222 1245
Q ss_pred EEEcCCCcccCC----CchhhhccCCCeEEEccCccccCcccccc-----ccCcccEEEccCCcccccCccch----h-c
Q 046000 333 VLLMSKNFLKGN----IPMQLLNHGSLQLLSVSENCLSGFMTSSF-----SLSSLVHLYVQRNDLSGTIPNAL----F-R 398 (470)
Q Consensus 333 ~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~l----~-~ 398 (470)
.+.+..|.+... ....+..|+.|+.||+++|.++....... .+++|++|++..|-+......++ . .
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~ 268 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKES 268 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhcc
Confidence 555555544311 22334455566666666655544433332 34455555555555543322211 1 2
Q ss_pred CCCccEEEcCCccceee----cchhhhcCCCCcEEEccCccc
Q 046000 399 SSKLMTLDLRDNGFSGI----ISDQINESSNLRVLLLRGNYL 436 (470)
Q Consensus 399 ~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~i 436 (470)
.|+|+++.+.+|.++.. +...+...|.|+.|+|++|.+
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 35555555555555321 111223345555555555555
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.35 E-value=8e-13 Score=113.63 Aligned_cols=234 Identities=22% Similarity=0.240 Sum_probs=161.8
Q ss_pred hhcCCCCccEEEccccccccccC----ccccCCCcccEEecCCCcC---CCcchh-------hhcCcccccEEEcccccc
Q 046000 227 SIGDMKTLTFLHLSKNNFSGELS----TLFTGCVSLWFLDRSHNNF---HDQIFP-------KYMNLTRLWFLYLDNNKF 292 (470)
Q Consensus 227 ~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~---~~~~~~-------~~~~~~~L~~l~l~~~~~ 292 (470)
.+..+.+++.+++++|.+..... ..+...++|+..++++-.. .+.+++ .+..+++|+++++++|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 45677899999999998875433 4455667888888876422 222222 344677999999999877
Q ss_pred ccccc----hhhcCCCCccEEECCCCcccCCcchhHH------------hhhccccEEEcCCCcccCC----Cchhhhcc
Q 046000 293 SGKIE----DGLLKSNQLKELDMSNNMLSGHIPHWIA------------NFSSYLEVLLMSKNFLKGN----IPMQLLNH 352 (470)
Q Consensus 293 ~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~l~~L~l~~~~~~~~----~~~~~~~~ 352 (470)
....+ ..+..+..|++|.+.+|.+.-.....++ ..+..++++.+.+|++.+. +...+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 64333 4456688999999999987622222211 1223488888888887532 33456677
Q ss_pred CCCeEEEccCccccCcccccc-----ccCcccEEEccCCccccc----CccchhcCCCccEEEcCCccceeecch----h
Q 046000 353 GSLQLLSVSENCLSGFMTSSF-----SLSSLVHLYVQRNDLSGT----IPNALFRSSKLMTLDLRDNGFSGIISD----Q 419 (470)
Q Consensus 353 ~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~----~ 419 (470)
+.|+.+.++.|.+..-+.... ++++|+.|+++.|-++.. ...+++.+++|+.|++++|-+...-.. .
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 889999998888765544221 688999999998887633 335667778899999999987643222 2
Q ss_pred h-hcCCCCcEEEccCcccCc----ccchhhccCCCCCeEEccCccc
Q 046000 420 I-NESSNLRVLLLRGNYLEG----PISNQFCQLRRLGVMDLSHNRI 460 (470)
Q Consensus 420 ~-~~~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~l~l~~n~~ 460 (470)
+ ...|+|++|.+.+|.|+. ++...+...|.|+.|++++|.+
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 2 346889999999998864 4555666788899999999887
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.32 E-value=3e-12 Score=103.25 Aligned_cols=122 Identities=25% Similarity=0.254 Sum_probs=47.5
Q ss_pred ccEEEcCCCcccCCCchhhh-ccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccch-hcCCCccEEEcC
Q 046000 331 LEVLLMSKNFLKGNIPMQLL-NHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNAL-FRSSKLMTLDLR 408 (470)
Q Consensus 331 l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-~~~~~L~~L~l~ 408 (470)
+++|++.+|.+.. + +.+. .+.+|+.|++++|.++.+.. ...+++|++|++++|+++.. .+.+ ..+|+|+.|+++
T Consensus 21 ~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 21 LRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S--CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECc
Confidence 6788888888762 2 3343 46788888888888877653 22578888888888888744 3333 457888888888
Q ss_pred Cccceee-cchhhhcCCCCcEEEccCcccCccc---chhhccCCCCCeEEcc
Q 046000 409 DNGFSGI-ISDQINESSNLRVLLLRGNYLEGPI---SNQFCQLRRLGVMDLS 456 (470)
Q Consensus 409 ~n~l~~~-~~~~~~~~~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~l~l~ 456 (470)
+|++... ....+..+++|+.|++.+|++...- ...+..+|+|+.||-.
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 8887542 2245677888888888888887421 1356667888887653
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=9e-13 Score=116.55 Aligned_cols=210 Identities=24% Similarity=0.221 Sum_probs=119.7
Q ss_pred cCCCCccEEEccccccccccC-ccccCCCcccEEecCCCcCCC--cchhhhcCcccccEEEccccccccccch-hhcCCC
Q 046000 229 GDMKTLTFLHLSKNNFSGELS-TLFTGCVSLWFLDRSHNNFHD--QIFPKYMNLTRLWFLYLDNNKFSGKIED-GLLKSN 304 (470)
Q Consensus 229 ~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~ 304 (470)
.++..|+++.++++.+..... .....|++++.|+++.|-+.. ........+|+|+.|+++.|++...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 355667777777776553322 344567777777777775544 1223334567777777777765522111 122456
Q ss_pred CccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc--ccCcccEEE
Q 046000 305 QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLY 382 (470)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~ 382 (470)
.++.|.++.|.+...--.++....++++.|.+..|...........-+..|+.|||++|.+.+.+.... .++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 677777777776533334444444457777777664211112222335567777777777666553332 677777777
Q ss_pred ccCCcccccC-ccc-----hhcCCCccEEEcCCcccee-ecchhhhcCCCCcEEEccCcccCc
Q 046000 383 VQRNDLSGTI-PNA-----LFRSSKLMTLDLRDNGFSG-IISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 383 l~~~~l~~~~-~~~-----l~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
++.|++..+. |+. ...+++|+.|++..|++.. .....+..+++|+.|.+-.|++..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 7777765331 111 2345777777777777642 122345566677777777776653
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.26 E-value=1.5e-12 Score=109.70 Aligned_cols=137 Identities=20% Similarity=0.174 Sum_probs=105.6
Q ss_pred hhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCC
Q 046000 322 HWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSK 401 (470)
Q Consensus 322 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~ 401 (470)
..+-.|.. ++.+++++|.++ .+.+.+.-.|.++.|++++|.+..+.. ...+++|+.|++++|.++.. ..+=..+-+
T Consensus 278 ~~~dTWq~-LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGN 353 (490)
T KOG1259|consen 278 VSADTWQE-LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC-VGWHLKLGN 353 (490)
T ss_pred EecchHhh-hhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh-hhhHhhhcC
Confidence 33334444 888999999887 677777778899999999999887766 33678999999999988733 333345678
Q ss_pred ccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc-ccchhhccCCCCCeEEccCcccccccC
Q 046000 402 LMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG-PISNQFCQLRRLGVMDLSHNRINGSIP 465 (470)
Q Consensus 402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~l~l~~n~~~~~~p 465 (470)
.++|.+++|.+.+. +.+..+-+|..||+++|+|.. .-...++++|+|+.+.+.+|++. .+|
T Consensus 354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~v 415 (490)
T KOG1259|consen 354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSV 415 (490)
T ss_pred EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccc
Confidence 88999999988743 567888899999999999875 23356888999999999999987 444
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.3e-12 Score=114.04 Aligned_cols=164 Identities=25% Similarity=0.257 Sum_probs=95.4
Q ss_pred hcCCCCcEEEccCCccccccc-hhhhcCcCCcEEeccCccCcCccCh-hhhccccccceecccCCCCccccccccCCCCc
Q 046000 52 NNMTRLKVLDTSFNQLSGSLP-SVIVNLASVEYLDLSNSYFEGTFPI-SSLANHSKLKVLRLSSRNNNMLQLKTENFLPT 129 (470)
Q Consensus 52 ~~~~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 129 (470)
+++..|+.+.|+++.+..... .....|++++.|+++.|-+....+. .....+++|+.|+++.|.+.........
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~---- 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT---- 193 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch----
Confidence 567788888888887763221 3667788888888888877655443 3455678888888888766533222111
Q ss_pred ccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcc-hhhhhc
Q 046000 130 FQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQD-KGIILQ 208 (470)
Q Consensus 130 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~ 208 (470)
...++|+.|.++.|.++..-..++...+|+++.|++..|...........-+..|++|++++|.+. .++.. ....++
T Consensus 194 -~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 194 -LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLP 271 (505)
T ss_pred -hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccccccccc
Confidence 133567777777776663333344456666777776666322222333344555666666666555 33311 111255
Q ss_pred cCceeeccCCccC
Q 046000 209 KLLYIDMANNRFE 221 (470)
Q Consensus 209 ~L~~L~l~~~~~~ 221 (470)
.|..|.++.+.+.
T Consensus 272 ~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 272 GLNQLNLSSTGIA 284 (505)
T ss_pred chhhhhccccCcc
Confidence 5555555555544
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.23 E-value=3e-12 Score=107.84 Aligned_cols=221 Identities=21% Similarity=0.246 Sum_probs=150.6
Q ss_pred hccCceeeccCCc--------cCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcC
Q 046000 207 LQKLLYIDMANNR--------FEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMN 278 (470)
Q Consensus 207 ~~~L~~L~l~~~~--------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 278 (470)
+.+|++|.+++.. +...+|-.+..+++|+.+.++.+.-..+. .....-|.|+.+.+....+.+. +.+..
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~~~--~~l~p 257 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQDV--PSLLP 257 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeeccccccc--ccccc
Confidence 5577777776542 11233444556677888888776543221 1122336677776665443321 11111
Q ss_pred cccccEEEcccc---ccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCC
Q 046000 279 LTRLWFLYLDNN---KFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSL 355 (470)
Q Consensus 279 ~~~L~~l~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L 355 (470)
...+ .+.... ...|........+..|+++++++|.+. .+.+++.-.++ ++.|++++|.+.. ...+..+++|
T Consensus 258 e~~~--~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pk-ir~L~lS~N~i~~--v~nLa~L~~L 331 (490)
T KOG1259|consen 258 ETIL--ADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVKLAPK-LRRLILSQNRIRT--VQNLAELPQL 331 (490)
T ss_pred hhhh--cCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhhhccc-eeEEeccccceee--ehhhhhcccc
Confidence 1111 122111 112223334455678999999999987 77777777777 9999999999862 2337779999
Q ss_pred eEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceee-cchhhhcCCCCcEEEccCc
Q 046000 356 QLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGI-ISDQINESSNLRVLLLRGN 434 (470)
Q Consensus 356 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n 434 (470)
+.||+++|.+..+..+...+-+.++|.+.+|.+.+. ..+..+-+|..||+++|+|... -...++++|.|+.+.|.+|
T Consensus 332 ~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 332 QLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred eEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 999999999998887777889999999999999643 4567778899999999998643 2346899999999999999
Q ss_pred ccCc
Q 046000 435 YLEG 438 (470)
Q Consensus 435 ~i~~ 438 (470)
++.+
T Consensus 410 Pl~~ 413 (490)
T KOG1259|consen 410 PLAG 413 (490)
T ss_pred Cccc
Confidence 9984
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=5.6e-12 Score=101.65 Aligned_cols=104 Identities=29% Similarity=0.344 Sum_probs=25.2
Q ss_pred ccCCCcCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhh-hcCcCCc
Q 046000 8 LHKLKNLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVI-VNLASVE 82 (470)
Q Consensus 8 l~~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~l~~L~ 82 (470)
+.+..+++.|+|++|+|..... +.+|+.|++++|.+++. +.+..+++|++|++++|.|+. +.+.+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 4445566777777776653322 44556666666666642 235556666666666666653 22223 3456666
Q ss_pred EEeccCccCcCccChhhhccccccceecccCC
Q 046000 83 YLDLSNSYFEGTFPISSLANHSKLKVLRLSSR 114 (470)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 114 (470)
+|++++|.+.+......+..+++|+.|++.+|
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCC
Confidence 66666666553333333444444444444443
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=4.9e-12 Score=115.64 Aligned_cols=193 Identities=28% Similarity=0.380 Sum_probs=134.3
Q ss_pred cccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEc
Q 046000 257 SLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLM 336 (470)
Q Consensus 257 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l 336 (470)
.-...+++.|++.+ .+..+..+..|+.+.++.|.+- ..+..+..+..|..++++.|++. ..|..++.++ |+.+-+
T Consensus 76 dt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp--Lkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP--LKVLIV 150 (722)
T ss_pred chhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc--ceeEEE
Confidence 33445666666543 3344445556666666666555 45566677777777888887776 7777777666 777777
Q ss_pred CCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeec
Q 046000 337 SKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGII 416 (470)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 416 (470)
++|+++ .+|+.+...+.|..||.+.|++..+++....+.+|+.|++..|.+. .+|+.+. .-.|..||++.|++. .+
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YL 226 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ec
Confidence 777776 6777777777888888888888888887777888888888888887 4444444 456788888888887 57
Q ss_pred chhhhcCCCCcEEEccCcccCcccchhhc---cCCCCCeEEccCcc
Q 046000 417 SDQINESSNLRVLLLRGNYLEGPISNQFC---QLRRLGVMDLSHNR 459 (470)
Q Consensus 417 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~---~l~~L~~l~l~~n~ 459 (470)
|-.|..|..|++|-|.+|++.. -|..++ ...-.|+|+.+-|+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 7778888888888888888873 343333 23555677777664
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=4e-12 Score=116.24 Aligned_cols=178 Identities=29% Similarity=0.387 Sum_probs=149.2
Q ss_pred cccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEE
Q 046000 279 LTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLL 358 (470)
Q Consensus 279 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L 358 (470)
+..-...+++.|+.. ..+..+..+..|+.+.++.|.+. .+|..+..+.. ++.++++.|++. ..|..++.++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~-lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEA-LTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhH-HHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 344456677778776 55666677778899999999887 88888888877 889999999987 6777776555 9999
Q ss_pred EccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 359 SVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 359 ~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
-+++|+++.++......+.|..|+.+.|.+. .+|..+.++.+|+.|.+..|.+. .+|+.+. .-.|..||+++|++.
T Consensus 149 i~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 149 IVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS- 224 (722)
T ss_pred EEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-
Confidence 9999999999988888889999999999998 66777889999999999999988 4666666 556899999999999
Q ss_pred ccchhhccCCCCCeEEccCcccccccCC
Q 046000 439 PISNQFCQLRRLGVMDLSHNRINGSIPS 466 (470)
Q Consensus 439 ~~~~~~~~l~~L~~l~l~~n~~~~~~p~ 466 (470)
.+|-.|++|+.|++|-|.+|+++ .-|+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq-SPPA 251 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ-SPPA 251 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC-CChH
Confidence 79999999999999999999987 6554
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.11 E-value=1.4e-10 Score=109.70 Aligned_cols=153 Identities=30% Similarity=0.381 Sum_probs=73.7
Q ss_pred CccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEcc
Q 046000 305 QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQ 384 (470)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~ 384 (470)
+|+.|++++|.+. .++..+..++. ++.|++++|.+. .++......+.|+.|++++|++.+++.......+|+++.+.
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~-L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPN-LKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhcccc-ccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhc
Confidence 4444444444443 33333333333 444444444443 33332224455555555555555555443233445555555
Q ss_pred CCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccccccc
Q 046000 385 RNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSI 464 (470)
Q Consensus 385 ~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 464 (470)
+|.+. ..+..+..+.++..+.+.+|++.. .+..++.+++++.|++++|+++.... +..+..++.|++++|.++...
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 55432 233344455555555555555542 23445555556666666665553222 555555566666665555433
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.05 E-value=2e-10 Score=76.16 Aligned_cols=59 Identities=34% Similarity=0.456 Sum_probs=30.0
Q ss_pred CccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcc
Q 046000 401 KLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNR 459 (470)
Q Consensus 401 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~ 459 (470)
+|++|++++|++....++.|.++++|++|++++|.++...+.+|.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554444445555555555555555554444455555555555555554
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.04 E-value=2.9e-10 Score=115.04 Aligned_cols=129 Identities=27% Similarity=0.321 Sum_probs=93.3
Q ss_pred cCCCcCceeeccCCCCC---Ccccccccccccccccc--CCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcE
Q 046000 9 HKLKNLEALDLSFNNIN---GTVESQESFELNLAKNN--IGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEY 83 (470)
Q Consensus 9 ~~~~~L~~L~ls~~~~~---~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 83 (470)
.+....|...+-++++. +...++.|+.|-+..+. +....+..|..+|.|++|||++|.--..+|+.++.+-+|++
T Consensus 520 ~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred cchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 34456677777777654 44447789999998886 66566777889999999999988766689999999999999
Q ss_pred EeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCcc
Q 046000 84 LDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNN 145 (470)
Q Consensus 84 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 145 (470)
|+++++.+. .+| ..+.++++|.+|++..+..-. ........+++||+|.+....
T Consensus 600 L~L~~t~I~-~LP-~~l~~Lk~L~~Lnl~~~~~l~------~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 600 LDLSDTGIS-HLP-SGLGNLKKLIYLNLEVTGRLE------SIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccCCCcc-ccc-hHHHHHHhhheeccccccccc------cccchhhhcccccEEEeeccc
Confidence 999999887 666 678888888888887653210 112223336667777665554
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.03 E-value=3.5e-10 Score=74.98 Aligned_cols=61 Identities=33% Similarity=0.431 Sum_probs=53.3
Q ss_pred CcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCccc
Q 046000 376 SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYL 436 (470)
Q Consensus 376 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i 436 (470)
|+|++|++++|++....+.+|..+++|++|++++|++....++.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5788999999999877778888899999999999999888888889999999999999875
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.00 E-value=3.7e-10 Score=114.20 Aligned_cols=127 Identities=26% Similarity=0.379 Sum_probs=72.3
Q ss_pred CcccEEEccCccccCccchHhhhcCCCCcEEEccccc--cCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCc
Q 046000 134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS--FTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLL 211 (470)
Q Consensus 134 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 211 (470)
...++..+.++.+. .++.. ..+++|++|-+.++. +.......+..++.|+.|++++|.-.+.+|..+.. +-+|+
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~-Li~Lr 598 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE-LVHLR 598 (889)
T ss_pred hheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh-hhhhh
Confidence 44556666555554 33332 134456666666553 33222333555666666666665544466666554 56666
Q ss_pred eeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCC
Q 046000 212 YIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSH 265 (470)
Q Consensus 212 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 265 (470)
+|+++++.+. .+|..++.++.|.+|++..+......+.....+++|++|.+..
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 6666666666 5666666666666666666554444445455566666666544
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=1.2e-09 Score=103.51 Aligned_cols=150 Identities=32% Similarity=0.294 Sum_probs=61.9
Q ss_pred cccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEc
Q 046000 257 SLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLM 336 (470)
Q Consensus 257 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l 336 (470)
+|+.|++++|.+... +..+..+++|+.|++++|++.. .+......+.|+.+++++|++. .+|........ ++++.+
T Consensus 141 nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~-L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSA-LEELDL 216 (394)
T ss_pred hcccccccccchhhh-hhhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhh-hhhhhh
Confidence 344444444443321 1233344444444444444441 1211223444445555555444 33333222221 444444
Q ss_pred CCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce
Q 046000 337 SKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS 413 (470)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 413 (470)
++|... ..+..+.....+..+.+.+|++...+.....++++++|++++|.++.... +....+++.|+++++.+.
T Consensus 217 ~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 217 SNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cCCcce-ecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 444321 23333444444444444444444433222234445555555555543322 444455555555555443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=8.2e-10 Score=109.32 Aligned_cols=111 Identities=27% Similarity=0.440 Sum_probs=77.6
Q ss_pred CeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccC
Q 046000 355 LQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRG 433 (470)
Q Consensus 355 L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 433 (470)
++.|+|++|.+....+..+ .+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|+.+..+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 5667777777664433333 667777777777777777777777777777777777777777777777777777777777
Q ss_pred cccCcccchhhccC-CCCCeEEccCcccccccC
Q 046000 434 NYLEGPISNQFCQL-RRLGVMDLSHNRINGSIP 465 (470)
Q Consensus 434 n~i~~~~~~~~~~l-~~L~~l~l~~n~~~~~~p 465 (470)
|++.+.+|..+... ..+..+++.+|+.....|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 77777777766653 355677777776555444
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.94 E-value=2.4e-09 Score=106.11 Aligned_cols=92 Identities=27% Similarity=0.464 Sum_probs=72.3
Q ss_pred cccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEcc
Q 046000 377 SLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLS 456 (470)
Q Consensus 377 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~ 456 (470)
.++.|+|++|.+.+..|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36777888888777777777777888888888888777777777778888888888888877778888888888888888
Q ss_pred CcccccccCCCc
Q 046000 457 HNRINGSIPSCF 468 (470)
Q Consensus 457 ~n~~~~~~p~~~ 468 (470)
+|++++.+|..+
T Consensus 499 ~N~l~g~iP~~l 510 (623)
T PLN03150 499 GNSLSGRVPAAL 510 (623)
T ss_pred CCcccccCChHH
Confidence 888888877654
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4.2e-10 Score=95.03 Aligned_cols=110 Identities=17% Similarity=0.109 Sum_probs=55.6
Q ss_pred cccCcccEEEccCccccCccchHhh-hcCCCCcEEEcccccc--C-CccCCCCCCCCcccEEeccCCcc-cCCCCcchhh
Q 046000 131 QLKHDLKYLDLSHNNLAGDFPAWIL-QNNTKLEVLCLTNNSF--T-GNLQLPHSKHDFLHHLDVSSNNF-TGKLPQDKGI 205 (470)
Q Consensus 131 ~~~~~L~~L~l~~~~i~~~~~~~~~-~~~~~L~~L~l~~~~i--~-~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~ 205 (470)
..++.|.+|++++|..+.+....+. .-.+++..|+++++.- . +....-...+++|.+|++++|.. +......++
T Consensus 257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~- 335 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF- 335 (419)
T ss_pred HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-
Confidence 3344455555555544322221111 1223455555555421 1 01111223566777777776643 222222222
Q ss_pred hhccCceeeccCCccCCCCchh---hcCCCCccEEEccccc
Q 046000 206 ILQKLLYIDMANNRFEGNLPSS---IGDMKTLTFLHLSKNN 243 (470)
Q Consensus 206 ~~~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~ 243 (470)
.++.|++++++.|.. +.|.. +...|+|+.|++-++-
T Consensus 336 kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 377888888888864 24443 4567888888887764
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.74 E-value=4.4e-10 Score=106.11 Aligned_cols=126 Identities=25% Similarity=0.183 Sum_probs=92.3
Q ss_pred ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCc
Q 046000 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN 410 (470)
Q Consensus 331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 410 (470)
+...+++.|.+. .+...+.-++.++.|+|++|++.+.. ..-.++.|++|+++.|.+.........+|. |..|.+++|
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 556667777765 55666667788888888888887766 233688888888888888744334444555 888888888
Q ss_pred cceeecchhhhcCCCCcEEEccCcccCc-ccchhhccCCCCCeEEccCcccc
Q 046000 411 GFSGIISDQINESSNLRVLLLRGNYLEG-PISNQFCQLRRLGVMDLSHNRIN 461 (470)
Q Consensus 411 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~l~l~~n~~~ 461 (470)
.++.. ..+.++.+|+.||++.|-+.+ .-...+..+..|+.|+|.||++-
T Consensus 243 ~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88743 447888888899999888764 23345667788888899988874
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=1.5e-09 Score=102.81 Aligned_cols=104 Identities=25% Similarity=0.272 Sum_probs=44.4
Q ss_pred hccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEE
Q 046000 207 LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLY 286 (470)
Q Consensus 207 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 286 (470)
+..++.+++.+|.+... ...+..+++|+.|++++|.++.... +..++.|+.|++++|.+.. ...+..++.|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISD--ISGLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhheeccCcchh--ccCCccchhhhccc
Confidence 44555555555555421 1113445555555555555443221 2333345555555554433 22222344444444
Q ss_pred ccccccccccc-hhhcCCCCccEEECCCCcc
Q 046000 287 LDNNKFSGKIE-DGLLKSNQLKELDMSNNML 316 (470)
Q Consensus 287 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 316 (470)
+++|.+..... . ...+.+++.+.+.+|.+
T Consensus 169 l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 169 LSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred CCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 44444442211 1 23344444444444443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=8.2e-10 Score=93.31 Aligned_cols=175 Identities=21% Similarity=0.156 Sum_probs=103.9
Q ss_pred cccEEEccccccccc-cchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCc-ccC-CCchhhhccCCCeE
Q 046000 281 RLWFLYLDNNKFSGK-IEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNF-LKG-NIPMQLLNHGSLQL 357 (470)
Q Consensus 281 ~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~-~~~-~~~~~~~~~~~L~~ 357 (470)
.++.++++...++.. .-..+..+.+|+.|.+.++++.+.+...++.-.. ++.++++.|. ++. ...-.+.+|..|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~-L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN-LVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccc-ceeeccccccccchhHHHHHHHhhhhHhh
Confidence 355555555554421 1223445666666666666666555555555444 6666666553 221 12234567888888
Q ss_pred EEccCccccCcccccc---ccCcccEEEccCCccc---ccCccchhcCCCccEEEcCCccc-eeecchhhhcCCCCcEEE
Q 046000 358 LSVSENCLSGFMTSSF---SLSSLVHLYVQRNDLS---GTIPNALFRSSKLMTLDLRDNGF-SGIISDQINESSNLRVLL 430 (470)
Q Consensus 358 L~l~~~~l~~~~~~~~---~~~~L~~L~l~~~~l~---~~~~~~l~~~~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~ 430 (470)
|+++.|.+........ --++|++|+++|+.-. ..+..-...||+|..|||++|.. .......|..++-|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 8888887654332222 2477888888877532 11122235678888888888863 333334456778888888
Q ss_pred ccCcccCcccchh---hccCCCCCeEEccCc
Q 046000 431 LRGNYLEGPISNQ---FCQLRRLGVMDLSHN 458 (470)
Q Consensus 431 l~~n~i~~~~~~~---~~~l~~L~~l~l~~n 458 (470)
++.|..- +|+. +...|+|.+|++.|+
T Consensus 345 lsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 8888653 4554 445678888887765
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.68 E-value=2.8e-08 Score=83.12 Aligned_cols=90 Identities=23% Similarity=0.270 Sum_probs=51.3
Q ss_pred hcCCCCccEEEccccccccccCccc----cCCCcccEEecCCCcCC---Ccc-------hhhhcCcccccEEEccccccc
Q 046000 228 IGDMKTLTFLHLSKNNFSGELSTLF----TGCVSLWFLDRSHNNFH---DQI-------FPKYMNLTRLWFLYLDNNKFS 293 (470)
Q Consensus 228 l~~l~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~---~~~-------~~~~~~~~~L~~l~l~~~~~~ 293 (470)
+..+..++.+++++|.+......++ ..-.+|+..++++-... +.. ...+..||+|+.+++++|-+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3457788888888888875544333 34466777666653221 111 123445666777777666554
Q ss_pred cccc----hhhcCCCCccEEECCCCccc
Q 046000 294 GKIE----DGLLKSNQLKELDMSNNMLS 317 (470)
Q Consensus 294 ~~~~----~~~~~~~~L~~L~l~~~~~~ 317 (470)
...+ +.+..-+.|++|.+++|.+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCC
Confidence 3322 33445566666666666543
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.68 E-value=4.7e-09 Score=88.82 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=59.3
Q ss_pred ccCcccEEEccCCcccccCc-cchhcCCCccEEEcCCcccee-ecchhhhcCCCCcEEEccCcccCcccch------hhc
Q 046000 374 SLSSLVHLYVQRNDLSGTIP-NALFRSSKLMTLDLRDNGFSG-IISDQINESSNLRVLLLRGNYLEGPISN------QFC 445 (470)
Q Consensus 374 ~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~------~~~ 445 (470)
-+|++..+-+..|.+.+... +.....|.+.-|+++.+++.+ ...+.+.+++.|..|.++++++.+.... .++
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa 276 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA 276 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence 47888888888888764432 345566777888999998864 2345678899999999999998764443 355
Q ss_pred cCCCCCeEEc
Q 046000 446 QLRRLGVMDL 455 (470)
Q Consensus 446 ~l~~L~~l~l 455 (470)
.++.+++|+=
T Consensus 277 RL~~v~vLNG 286 (418)
T KOG2982|consen 277 RLTKVQVLNG 286 (418)
T ss_pred eccceEEecC
Confidence 6777777753
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=2.1e-09 Score=95.16 Aligned_cols=280 Identities=18% Similarity=0.087 Sum_probs=127.1
Q ss_pred cccccccccccCCCC--chHhhhcCCCCcEEEccCCc-cccccchhh-hcCcCCcEEeccCcc-CcCccChhhhcccccc
Q 046000 32 ESFELNLAKNNIGGH--LLDCLNNMTRLKVLDTSFNQ-LSGSLPSVI-VNLASVEYLDLSNSY-FEGTFPISSLANHSKL 106 (470)
Q Consensus 32 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-i~~~~~~~~-~~l~~L~~L~l~~~~-~~~~~~~~~l~~~~~L 106 (470)
.|+.|.++++.-.+. .-....++|++++|++.+|. +++..-..+ ..|++|++|++..|. +++.........|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 445555555543322 11223456666666666553 222211112 245666666666643 3322222234446666
Q ss_pred ceecccCCCCccccccccCCCCcccccCcccEEEccCccccC-ccchHhhhcCCCCcEEEccccc-cCCccC-CCCCCCC
Q 046000 107 KVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAG-DFPAWILQNNTKLEVLCLTNNS-FTGNLQ-LPHSKHD 183 (470)
Q Consensus 107 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~~L~~L~l~~~~-i~~~~~-~~~~~~~ 183 (470)
++++++.|.-- ......+...++..++.+...||.-.+ .....+...+..+.++++..|. +++... ..-..+.
T Consensus 219 ~~lNlSwc~qi----~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 219 KYLNLSWCPQI----SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred HHhhhccCchh----hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 66666655321 112222233444445555555542110 1111111233345555544442 221111 1112345
Q ss_pred cccEEeccCCcccC-CCCcchhhhhccCceeeccCCc-cCCCCchhh-cCCCCccEEEccccccccc--cCccccCCCcc
Q 046000 184 FLHHLDVSSNNFTG-KLPQDKGIILQKLLYIDMANNR-FEGNLPSSI-GDMKTLTFLHLSKNNFSGE--LSTLFTGCVSL 258 (470)
Q Consensus 184 ~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L 258 (470)
.|+.+..+++...+ ..-...+....+|+.+-+.+|+ +++.-...+ .+++.|+.+++.++..... ....-..++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 56666666654322 1222233445666777666665 221111111 3556677777666643311 12222346677
Q ss_pred cEEecCCCcC-CCcchhhh----cCcccccEEEccccccc-cccchhhcCCCCccEEECCCCc
Q 046000 259 WFLDRSHNNF-HDQIFPKY----MNLTRLWFLYLDNNKFS-GKIEDGLLKSNQLKELDMSNNM 315 (470)
Q Consensus 259 ~~L~l~~~~~-~~~~~~~~----~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 315 (470)
+.+.++.|.. ++.....+ .....+..+.++++... +.....+..+++|+.+++.++.
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7777776543 22211111 23456666777766433 3334455666777777777765
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=4.2e-09 Score=99.77 Aligned_cols=127 Identities=30% Similarity=0.326 Sum_probs=64.7
Q ss_pred ccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceec
Q 046000 31 QESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR 110 (470)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 110 (470)
..+..+++..+.+.. +-..++.+++|+.|++.+|.|+. +...+..+++|++|++++|.|+...+ +..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccc---hhhccchhhhe
Confidence 444455555555552 22335556666666666666652 22225556666666666666653322 44444466666
Q ss_pred ccCCCCccccccccCCCCcccccCcccEEEccCccccCccch-HhhhcCCCCcEEEccccccC
Q 046000 111 LSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPA-WILQNNTKLEVLCLTNNSFT 172 (470)
Q Consensus 111 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~~L~~L~l~~~~i~ 172 (470)
+.+|.+..+. .+..++.|+.+++++|++. .+.. . ...+.+++.+++.++.+.
T Consensus 147 l~~N~i~~~~--------~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLISDIS--------GLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcchhcc--------CCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchh
Confidence 6665544221 2222455666666666555 2222 1 234555555555555544
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.58 E-value=1.6e-08 Score=99.94 Aligned_cols=154 Identities=23% Similarity=0.257 Sum_probs=94.6
Q ss_pred CcCceeeccCCCCCCccc-------cccccccccccccCCCC-chHhhhcCCCCcEEEccCCccccccchhhhcCcCCcE
Q 046000 12 KNLEALDLSFNNINGTVE-------SQESFELNLAKNNIGGH-LLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEY 83 (470)
Q Consensus 12 ~~L~~L~ls~~~~~~~~~-------~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 83 (470)
.+|+.||+++...-...- +|+|++|.+.+-.+... .-....++|+|..||+|++.+++. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 467777777653321111 77777777777665432 233445677777777777777644 66777777777
Q ss_pred EeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcE
Q 046000 84 LDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEV 163 (470)
Q Consensus 84 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~ 163 (470)
|.+.+-.+........+.++++|+.|+++.................-..+|+|+.||.+++.+.+.+.+.+....++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 77777776644444567777777777777654443332222223333445677777777777666666666555566665
Q ss_pred EEcc
Q 046000 164 LCLT 167 (470)
Q Consensus 164 L~l~ 167 (470)
+..-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 5543
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.55 E-value=2.1e-08 Score=83.78 Aligned_cols=230 Identities=19% Similarity=0.179 Sum_probs=140.4
Q ss_pred ccCceeeccCCccCCCC----chhhcCCCCccEEEccccccc---c-------ccCccccCCCcccEEecCCCcCCCcch
Q 046000 208 QKLLYIDMANNRFEGNL----PSSIGDMKTLTFLHLSKNNFS---G-------ELSTLFTGCVSLWFLDRSHNNFHDQIF 273 (470)
Q Consensus 208 ~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~---~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~ 273 (470)
..++.+++++|.|...- ...+.+-.+|+..+++.-... + ....++.+||.|+..++++|-+....+
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 34555555555554221 122334455666555543211 1 122345678888888888887766544
Q ss_pred hh----hcCcccccEEEccccccccccchhh-------------cCCCCccEEECCCCcccCCcchhH-Hh---hhcccc
Q 046000 274 PK----YMNLTRLWFLYLDNNKFSGKIEDGL-------------LKSNQLKELDMSNNMLSGHIPHWI-AN---FSSYLE 332 (470)
Q Consensus 274 ~~----~~~~~~L~~l~l~~~~~~~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~-~~---~~~~l~ 332 (470)
+. ++....|.+|.+++|.+.......+ ..-|.|+.+....|++. ..+... +. .-..++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCce
Confidence 43 4566888899998887763332222 23478999999999886 444322 21 123477
Q ss_pred EEEcCCCcccCC-----CchhhhccCCCeEEEccCccccCcccccc-----ccCcccEEEccCCcccccCccchh-----
Q 046000 333 VLLMSKNFLKGN-----IPMQLLNHGSLQLLSVSENCLSGFMTSSF-----SLSSLVHLYVQRNDLSGTIPNALF----- 397 (470)
Q Consensus 333 ~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~l~----- 397 (470)
.+.+..|.+... +...+..+.+|+.||+++|.++..++.+. ..+.|++|.+..|-++......+.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 888888877622 11234568899999999998877665554 456688999988887654433221
Q ss_pred -cCCCccEEEcCCccceeecc-----hhh--hcCCCCcEEEccCcccCc
Q 046000 398 -RSSKLMTLDLRDNGFSGIIS-----DQI--NESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 398 -~~~~L~~L~l~~n~l~~~~~-----~~~--~~~~~L~~L~l~~n~i~~ 438 (470)
..|+|..|-..+|.+.+.+. ..+ ..+|-|..|.+.+|.++.
T Consensus 269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 24888888888887643211 111 356777778888888763
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=3e-09 Score=100.62 Aligned_cols=176 Identities=20% Similarity=0.213 Sum_probs=80.9
Q ss_pred ccccCCCcCceeeccCCCCCCccc----ccccccccccccc--CCCCchHhhhc------CCCCcEEEccCCccccccch
Q 046000 6 AGLHKLKNLEALDLSFNNINGTVE----SQESFELNLAKNN--IGGHLLDCLNN------MTRLKVLDTSFNQLSGSLPS 73 (470)
Q Consensus 6 ~~l~~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~--~~~~~~~~~~~------~~~L~~L~l~~~~i~~~~~~ 73 (470)
=.|..++.||+|.+.++.+..... -..|++|..++.- +...+....+. .-.|.+.+.++|.+. ....
T Consensus 103 i~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~ 181 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDE 181 (1096)
T ss_pred ceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHH
Confidence 346778999999999998864322 1122222222110 00000000000 124555566666555 4455
Q ss_pred hhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchH
Q 046000 74 VIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAW 153 (470)
Q Consensus 74 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 153 (470)
++.-++.|+.|+|++|++++. ..+..|++|++|+|+.|.+..+..-. ...+ +|..|.+++|.++ .+..
T Consensus 182 SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~------~~gc-~L~~L~lrnN~l~-tL~g- 249 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLS------MVGC-KLQLLNLRNNALT-TLRG- 249 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccc------hhhh-hheeeeecccHHH-hhhh-
Confidence 555556666666666655422 24555666666666665544332111 0111 2455555555444 2222
Q ss_pred hhhcCCCCcEEEccccccCCcc-CCCCCCCCcccEEeccCCcc
Q 046000 154 ILQNNTKLEVLCLTNNSFTGNL-QLPHSKHDFLHHLDVSSNNF 195 (470)
Q Consensus 154 ~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~~~ 195 (470)
++++.+|+.||+++|-+.+.. ..++..+..|+.|.+.+|.+
T Consensus 250 -ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 250 -IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 234455555555554433211 12223334444555554443
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.51 E-value=2.6e-09 Score=94.52 Aligned_cols=154 Identities=20% Similarity=0.133 Sum_probs=75.9
Q ss_pred CCCCccEEEcccccc-ccccCc-cccCCCcccEEecCCCc-CCCcchhhhc-CcccccEEEccccccc--cccchhhcCC
Q 046000 230 DMKTLTFLHLSKNNF-SGELST-LFTGCVSLWFLDRSHNN-FHDQIFPKYM-NLTRLWFLYLDNNKFS--GKIEDGLLKS 303 (470)
Q Consensus 230 ~l~~L~~L~l~~~~~-~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~-~~~~L~~l~l~~~~~~--~~~~~~~~~~ 303 (470)
.+..|+.+..+++.. .+.... .-.++++|+++.+.+|+ +++..+..++ +++.|+.+++..+... +.....-..+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 445566666655432 221111 12345677777777664 3333333443 5677777777665432 2233334556
Q ss_pred CCccEEECCCCcc-cCCcchhHHh---hhccccEEEcCCCccc-CCCchhhhccCCCeEEEccCcc-ccCcccccc--cc
Q 046000 304 NQLKELDMSNNML-SGHIPHWIAN---FSSYLEVLLMSKNFLK-GNIPMQLLNHGSLQLLSVSENC-LSGFMTSSF--SL 375 (470)
Q Consensus 304 ~~L~~L~l~~~~~-~~~~~~~~~~---~~~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~--~~ 375 (470)
+.|+.+.++.|.. +++....+.. ....++.+.++++... ...-+.+..|+.|+.+++-+++ ++..+...+ ++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 7777777776643 2221112211 1122555566666533 2233445566677777666664 332222222 45
Q ss_pred CcccEEEc
Q 046000 376 SSLVHLYV 383 (470)
Q Consensus 376 ~~L~~L~l 383 (470)
|+++...+
T Consensus 452 p~i~v~a~ 459 (483)
T KOG4341|consen 452 PNIKVHAY 459 (483)
T ss_pred ccceehhh
Confidence 66555433
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=1.8e-07 Score=79.50 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=48.9
Q ss_pred CCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCC-CchhhcCCCCccEEEccccccccccC------ccccC
Q 046000 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGN-LPSSIGDMKTLTFLHLSKNNFSGELS------TLFTG 254 (470)
Q Consensus 182 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~------~~~~~ 254 (470)
++++..+.+..|.+.+.-.+..+..+|.+-.|.+..+++.+- ..+.+.+++.|..|.++++++.+... -.++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 455666666666555444444444455555666666666521 12346677888888888777654332 12456
Q ss_pred CCcccEEecC
Q 046000 255 CVSLWFLDRS 264 (470)
Q Consensus 255 l~~L~~L~l~ 264 (470)
+++++.|+-+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 7888887766
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.43 E-value=1.8e-08 Score=75.20 Aligned_cols=131 Identities=19% Similarity=0.165 Sum_probs=77.6
Q ss_pred ccEEEcCCCcccCCCchhh---hccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEE
Q 046000 331 LEVLLMSKNFLKGNIPMQL---LNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLD 406 (470)
Q Consensus 331 l~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 406 (470)
+..++++.|++. .++... ..-..|...++++|.+.+.+.... .++..+.|++.+|+++ .+|+.+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 445666677654 333333 333455666777777776665544 5667777777777777 4455577777777777
Q ss_pred cCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccC
Q 046000 407 LRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP 465 (470)
Q Consensus 407 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p 465 (470)
++.|++. ..|..+..+.++-.|+..+|.+.....+ +-.-...-..++.+++..+..|
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH-HhccccHHHHHhcCCcccccCc
Confidence 7777776 4555565577777777777766632222 2222233333445555555444
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.37 E-value=5.6e-07 Score=72.16 Aligned_cols=130 Identities=21% Similarity=0.164 Sum_probs=96.2
Q ss_pred cCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccC
Q 046000 13 NLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSN 88 (470)
Q Consensus 13 ~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 88 (470)
.=+.+||++.++..... ..+.-.+|+++|.+... ..|..+++|.+|.+.+|+|+.+.|.--..+++|..|.+.+
T Consensus 20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccccchhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 35678888887754444 55667899999998853 3488899999999999999988888777889999999999
Q ss_pred ccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCcccc
Q 046000 89 SYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLA 147 (470)
Q Consensus 89 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 147 (470)
|.+........+..|++|+.|.+-+|...... .. -...+.+.++|+.||+++..-.
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~--~Y-R~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKK--NY-RLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhccc--Cc-eeEEEEecCcceEeehhhhhHH
Confidence 99875555567888999999998887644211 11 1224566688888888776543
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.28 E-value=8e-07 Score=53.62 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=16.6
Q ss_pred CCcEEEccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000 425 NLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461 (470)
Q Consensus 425 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~ 461 (470)
+|++|++++|+|++ ++..+.+|++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 44555555555542 3333445555555555555544
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.17 E-value=3.5e-06 Score=67.71 Aligned_cols=106 Identities=21% Similarity=0.232 Sum_probs=82.6
Q ss_pred cCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceee-cchhhhcCCCCcEEE
Q 046000 352 HGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGI-ISDQINESSNLRVLL 430 (470)
Q Consensus 352 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~ 430 (470)
......+|+++|.+..++... .++.|.+|.+.+|+|+.+.|.--..+|+|++|.+.+|.+... ..+-+..||.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp-~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLP-HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCC-CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 346778999999887654322 678999999999999977777666779999999999987532 123467899999999
Q ss_pred ccCcccCcc---cchhhccCCCCCeEEccCc
Q 046000 431 LRGNYLEGP---ISNQFCQLRRLGVMDLSHN 458 (470)
Q Consensus 431 l~~n~i~~~---~~~~~~~l~~L~~l~l~~n 458 (470)
+-+|+++.. =...+..+|+|++||+++-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999998742 2346788899999998764
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=3.6e-06 Score=50.74 Aligned_cols=38 Identities=26% Similarity=0.415 Sum_probs=24.0
Q ss_pred CCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 400 SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
++|++|++++|+++. ++..+.++++|++|++++|+|++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 356777777777763 44456777777777777777663
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=4.3e-07 Score=68.01 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=41.2
Q ss_pred CccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEcc
Q 046000 305 QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQ 384 (470)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~ 384 (470)
.|...++++|.+. .+|..+...++.++.+++.+|+++ .+|+.+..++.|+.++++.|.+...+...+.+.++-.|+..
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 3444445555444 444444444333455555555554 44555555555555555555555544444444455555555
Q ss_pred CCccc
Q 046000 385 RNDLS 389 (470)
Q Consensus 385 ~~~l~ 389 (470)
+|.+.
T Consensus 132 ~na~~ 136 (177)
T KOG4579|consen 132 ENARA 136 (177)
T ss_pred CCccc
Confidence 55444
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=3.9e-05 Score=70.27 Aligned_cols=139 Identities=19% Similarity=0.219 Sum_probs=89.9
Q ss_pred hhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCC-cccCCCchhhhccC
Q 046000 275 KYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKN-FLKGNIPMQLLNHG 353 (470)
Q Consensus 275 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~~~~~~~ 353 (470)
.+..+..+..|++++|.+... + .-..+|++|.+++|.-...+|..+ +..|+.|.+.+| .+. .+| +
T Consensus 47 r~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~ 112 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------E 112 (426)
T ss_pred HHHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------c
Confidence 345578899999999977733 3 234579999998876444556533 445899999988 443 333 4
Q ss_pred CCeEEEccCccccCccccccccCcccEEEccCCc-ccc-cCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEc
Q 046000 354 SLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRND-LSG-TIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLL 431 (470)
Q Consensus 354 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 431 (470)
+|+.|+++++....+... .++|++|.+.++. ... ..+.. -.++|+.|++++|... ..|+.+ ..+|+.|++
T Consensus 113 sLe~L~L~~n~~~~L~~L---PssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~l 184 (426)
T PRK15386 113 SVRSLEIKGSATDSIKNV---PNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKL--PESLQSITL 184 (426)
T ss_pred ccceEEeCCCCCcccccC---cchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCcccc--cccCcEEEe
Confidence 688888877665443321 3578888885433 111 11111 2278999999999866 344433 368999999
Q ss_pred cCcc
Q 046000 432 RGNY 435 (470)
Q Consensus 432 ~~n~ 435 (470)
+.+.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 8774
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=7.1e-06 Score=81.51 Aligned_cols=186 Identities=20% Similarity=0.176 Sum_probs=104.5
Q ss_pred CCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccc-------------cchhh--cCCCCccEEECCCCcc-cC
Q 046000 255 CVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGK-------------IEDGL--LKSNQLKELDMSNNML-SG 318 (470)
Q Consensus 255 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-------------~~~~~--~~~~~L~~L~l~~~~~-~~ 318 (470)
.-++...++.+............... |+.+.+++-..... ....+ ....+|+.|++++... ..
T Consensus 59 ~f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~ 137 (699)
T KOG3665|consen 59 KFNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN 137 (699)
T ss_pred hheeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence 34566667766655554444444444 77777665322100 00001 1124677777777542 23
Q ss_pred CcchhHHhhhccccEEEcCCCcccCC-CchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccc-cCccch
Q 046000 319 HIPHWIANFSSYLEVLLMSKNFLKGN-IPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSG-TIPNAL 396 (470)
Q Consensus 319 ~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l 396 (470)
..+..++...++|+.|.+.+-.+... ......++|+|..||+++..++.+ .+...+.+|++|.+.+-.+.. .....+
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 44455566666677777776554322 233345677777777777777765 333367777777777766653 122345
Q ss_pred hcCCCccEEEcCCccceeec--c----hhhhcCCCCcEEEccCcccCcccch
Q 046000 397 FRSSKLMTLDLRDNGFSGII--S----DQINESSNLRVLLLRGNYLEGPISN 442 (470)
Q Consensus 397 ~~~~~L~~L~l~~n~l~~~~--~----~~~~~~~~L~~L~l~~n~i~~~~~~ 442 (470)
.++++|+.||+|..+..... . +.-..+|+||.||.++..+.+...+
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 66777777777766643221 1 1113367777777777776653333
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.82 E-value=7.5e-05 Score=68.46 Aligned_cols=140 Identities=12% Similarity=0.047 Sum_probs=88.4
Q ss_pred ccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccc
Q 046000 252 FTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYL 331 (470)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 331 (470)
+..+.+++.|++++|.+.... . -.++|+.|.++++.--...+..+ .++|+.|.+++|.....+ +..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP--~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-------P~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP--V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-------PESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC--C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-------cccc
Confidence 445688999999999776543 2 23579999998864433444433 468999999998432233 3447
Q ss_pred cEEEcCCCcccCCCchhhhccCCCeEEEccCcc-ccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCc
Q 046000 332 EVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENC-LSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN 410 (470)
Q Consensus 332 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 410 (470)
+.|++..+... .++. + .++|+.|.+.++. .........-.++|++|++.+|... ..|+.+. .+|+.|+++.+
T Consensus 115 e~L~L~~n~~~-~L~~-L--PssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 115 RSLEIKGSATD-SIKN-V--PNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ceEEeCCCCCc-cccc-C--cchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 88888765543 1111 1 3467788775432 1111111112378999999999876 4455444 78999999877
Q ss_pred c
Q 046000 411 G 411 (470)
Q Consensus 411 ~ 411 (470)
.
T Consensus 188 ~ 188 (426)
T PRK15386 188 Q 188 (426)
T ss_pred c
Confidence 4
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.73 E-value=0.00012 Score=57.09 Aligned_cols=114 Identities=21% Similarity=0.260 Sum_probs=39.0
Q ss_pred ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCC
Q 046000 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD 409 (470)
Q Consensus 331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 409 (470)
++.+.+.. .+.......|..++.++.+.+.++ +..++...+ .+++++.+.+.+ .+.......+..+++|+.+++..
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 44454442 222222334445555555555443 444444444 333555555543 22223334444455555555544
Q ss_pred ccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCC
Q 046000 410 NGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRL 450 (470)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L 450 (470)
+ +.......+.++ +++.+.+.. .+.......|.++++|
T Consensus 91 ~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 91 N-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred c-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 3 333334444444 555555544 3333334445444444
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.73 E-value=0.00011 Score=57.17 Aligned_cols=117 Identities=16% Similarity=0.257 Sum_probs=61.5
Q ss_pred hhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCC
Q 046000 347 MQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSN 425 (470)
Q Consensus 347 ~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 425 (470)
..|..+..|+.+.+.. .+..++...+ .+++|+.+.+.++ +......++..+++++.+.+.+ .+.......+..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3466677788888764 5666666666 4567888888764 5545556677777788888866 444344556777788
Q ss_pred CcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000 426 LRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT 469 (470)
Q Consensus 426 L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~ 469 (470)
++.+++..+ +.......+.++ .++.+.+.+ .++..-..+|.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~ 123 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFK 123 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccc
Confidence 888888665 554556667776 777777765 44434444443
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.64 E-value=1.5e-05 Score=78.00 Aligned_cols=112 Identities=22% Similarity=0.096 Sum_probs=48.8
Q ss_pred cccccccccccccCCCC--chHhhhcCCCCcEEEccCC-ccccc----cchhhhcCcCCcEEeccCcc-CcCccChhhhc
Q 046000 30 SQESFELNLAKNNIGGH--LLDCLNNMTRLKVLDTSFN-QLSGS----LPSVIVNLASVEYLDLSNSY-FEGTFPISSLA 101 (470)
Q Consensus 30 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~ 101 (470)
++.|++|.+..+..... .-.....+++|+.|+++++ ..... .......+++|+.|+++.+. +++........
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45555565555533222 2233445566666666552 11101 11123345556666666655 33222222222
Q ss_pred cccccceecccCCCCccccccccCCCCcccccCcccEEEccCcc
Q 046000 102 NHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNN 145 (470)
Q Consensus 102 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 145 (470)
.|++|+.|.+..|.. ....++......++.|++|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~----lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSN----LTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCc----cchhHHHHHHHhcCcccEEeeecCc
Confidence 355555555444421 1122222333344455555555553
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=4.8e-06 Score=70.32 Aligned_cols=82 Identities=21% Similarity=0.199 Sum_probs=57.4
Q ss_pred ccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceec
Q 046000 31 QESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLR 110 (470)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 110 (470)
.+.++|++.+|.+..+ .-..+|+.|++|.|+-|+|+.. +.+..|++|++|+|+.|.|.+.-...-+.++++|+.|.
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3455677777777642 2245788888888888888644 44778888888888888876554455677778888888
Q ss_pred ccCCCC
Q 046000 111 LSSRNN 116 (470)
Q Consensus 111 l~~~~~ 116 (470)
|..|..
T Consensus 95 L~ENPC 100 (388)
T KOG2123|consen 95 LDENPC 100 (388)
T ss_pred hccCCc
Confidence 877643
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=3.4e-06 Score=71.22 Aligned_cols=99 Identities=24% Similarity=0.126 Sum_probs=80.4
Q ss_pred CCCcCceeeccCCCCCCccc---cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccc-cchhhhcCcCCcEEe
Q 046000 10 KLKNLEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGS-LPSVIVNLASVEYLD 85 (470)
Q Consensus 10 ~~~~L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~ 85 (470)
.+.+.+.|++++|.++++.. ++.|+.|.|+-|.|++. ..+..|++|++|.|..|.|.+. .-..+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 35677889999999987766 88899999999999974 4499999999999999999743 223567899999999
Q ss_pred ccCccCcCccCh----hhhccccccceec
Q 046000 86 LSNSYFEGTFPI----SSLANHSKLKVLR 110 (470)
Q Consensus 86 l~~~~~~~~~~~----~~l~~~~~L~~L~ 110 (470)
|..|+..+..+. ..++.+++|++|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 999988766553 4677788888875
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.40 E-value=0.00014 Score=61.37 Aligned_cols=110 Identities=24% Similarity=0.212 Sum_probs=57.3
Q ss_pred cccccccccccccCCCCchHhhhcCCCCcEEEccCC--ccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccc
Q 046000 30 SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFN--QLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLK 107 (470)
Q Consensus 30 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 107 (470)
...|+.|++.++.+++. ..|-.+++||.|.++.| ++...++-....+++|++|++++|++...-....+..+++|.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 55555666666555531 22444566666666666 555444444555566666666666665333334455556666
Q ss_pred eecccCCCCccccccccCCCCcccccCcccEEEccCc
Q 046000 108 VLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHN 144 (470)
Q Consensus 108 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 144 (470)
+|++..|....... ---..+..+++|++++-.+.
T Consensus 120 ~Ldl~n~~~~~l~d---yre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDD---YREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCcccccc---HHHHHHHHhhhhcccccccc
Confidence 66666654332110 00122444566666654444
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.39 E-value=8.4e-05 Score=62.65 Aligned_cols=114 Identities=22% Similarity=0.185 Sum_probs=74.4
Q ss_pred CchhhhccCCCeEEEccCccccCccccccccCcccEEEccCC--cccccCccchhcCCCccEEEcCCccceee-cchhhh
Q 046000 345 IPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRN--DLSGTIPNALFRSSKLMTLDLRDNGFSGI-ISDQIN 421 (470)
Q Consensus 345 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~ 421 (470)
+.........|+.+.+.+..++...... .+|+|++|.++.| ++.....-....+|+|+++++++|++... ...-+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~ 113 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK 113 (260)
T ss_pred cccccccccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhh
Confidence 3344445566777777776665433221 5789999999999 55544444445669999999999998631 112245
Q ss_pred cCCCCcEEEccCcccCccc---chhhccCCCCCeEEccCcc
Q 046000 422 ESSNLRVLLLRGNYLEGPI---SNQFCQLRRLGVMDLSHNR 459 (470)
Q Consensus 422 ~~~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~l~l~~n~ 459 (470)
.+++|..|++.+|..++.- -..|.-+++|+.++-....
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 6778889999999776411 2356667888888765554
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.25 E-value=7.6e-05 Score=72.98 Aligned_cols=110 Identities=21% Similarity=0.088 Sum_probs=62.5
Q ss_pred hccCceeeccCCccCCC--CchhhcCCCCccEEEcccc-cc-ccc---cCccccCCCcccEEecCCCc-CCCcchhhhcC
Q 046000 207 LQKLLYIDMANNRFEGN--LPSSIGDMKTLTFLHLSKN-NF-SGE---LSTLFTGCVSLWFLDRSHNN-FHDQIFPKYMN 278 (470)
Q Consensus 207 ~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~-~~~---~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~ 278 (470)
++.|+.+.+.++.-... .......++.|+.|+++++ .. ... .......+++|+.++++.+. +++.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56777777776643322 2234556777888887763 11 111 11233446777777777766 55555555543
Q ss_pred -cccccEEEccccc-cccccc-hhhcCCCCccEEECCCCcc
Q 046000 279 -LTRLWFLYLDNNK-FSGKIE-DGLLKSNQLKELDMSNNML 316 (470)
Q Consensus 279 -~~~L~~l~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~~ 316 (470)
+++|+.+.+.++. +++... .....++.|++|++++|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 6777777766655 443322 2334566677777776654
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.0007 Score=54.88 Aligned_cols=82 Identities=12% Similarity=0.078 Sum_probs=38.8
Q ss_pred CcccEEEccCCcccccCccchhcCCCccEEEcCCcccee-ecchhhh-cCCCCcEEEccCcc-cCcccchhhccCCCCCe
Q 046000 376 SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSG-IISDQIN-ESSNLRVLLLRGNY-LEGPISNQFCQLRRLGV 452 (470)
Q Consensus 376 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~-~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~ 452 (470)
..++.++-+++.|..+..+.+..++.++.|.+.+|+--+ .-.+.++ -.++|++|++++|+ |++.....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 344455555555554444455555555555555554211 1111111 12455555555553 55555555555555555
Q ss_pred EEccC
Q 046000 453 MDLSH 457 (470)
Q Consensus 453 l~l~~ 457 (470)
|.+++
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55544
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.40 E-value=0.0015 Score=32.54 Aligned_cols=20 Identities=50% Similarity=0.778 Sum_probs=13.2
Q ss_pred CCCeEEccCcccccccCCCcc
Q 046000 449 RLGVMDLSHNRINGSIPSCFT 469 (470)
Q Consensus 449 ~L~~l~l~~n~~~~~~p~~~~ 469 (470)
+|+.|++++|+++ .+|..|.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3567777777777 6666654
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.67 E-value=0.0062 Score=30.28 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=5.8
Q ss_pred ccEEEcCCccce
Q 046000 402 LMTLDLRDNGFS 413 (470)
Q Consensus 402 L~~L~l~~n~l~ 413 (470)
|+.||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444455555444
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.67 E-value=0.0071 Score=27.83 Aligned_cols=13 Identities=46% Similarity=0.769 Sum_probs=5.8
Q ss_pred CCCeEEccCcccc
Q 046000 449 RLGVMDLSHNRIN 461 (470)
Q Consensus 449 ~L~~l~l~~n~~~ 461 (470)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4556666666654
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.94 E-value=0.0003 Score=67.08 Aligned_cols=182 Identities=23% Similarity=0.160 Sum_probs=104.8
Q ss_pred cccEEecCCCcCCCcchhh----hcCcccccEEEccccccccccchh----hcCC-CCccEEECCCCcccCCcchhHHhh
Q 046000 257 SLWFLDRSHNNFHDQIFPK----YMNLTRLWFLYLDNNKFSGKIEDG----LLKS-NQLKELDMSNNMLSGHIPHWIANF 327 (470)
Q Consensus 257 ~L~~L~l~~~~~~~~~~~~----~~~~~~L~~l~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~~~~ 327 (470)
.+..+.+.+|.+.+..+.. +...+.|..+++++|.+.+..... +... ..++.|.+..|.++......+...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3677888888887754443 456788888888888877433222 2232 456777777777765544433332
Q ss_pred ---hccccEEEcCCCcccC----CCchhhh----ccCCCeEEEccCccccCcccccc-----ccCc-ccEEEccCCcccc
Q 046000 328 ---SSYLEVLLMSKNFLKG----NIPMQLL----NHGSLQLLSVSENCLSGFMTSSF-----SLSS-LVHLYVQRNDLSG 390 (470)
Q Consensus 328 ---~~~l~~L~l~~~~~~~----~~~~~~~----~~~~L~~L~l~~~~l~~~~~~~~-----~~~~-L~~L~l~~~~l~~ 390 (470)
...++.+++..|.+.. .++..+. ...++++|++++|.++....... ..+. +.++++.+|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 3346666777776531 1222222 35567777777777654332222 2333 5557777777654
Q ss_pred cCc----cchhcC-CCccEEEcCCccceee----cchhhhcCCCCcEEEccCcccCc
Q 046000 391 TIP----NALFRS-SKLMTLDLRDNGFSGI----ISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 391 ~~~----~~l~~~-~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
... ..+..+ +.+++++++.|.+... ....+..++.++++.+++|++..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 421 223333 5567777777776543 33445566677777777777654
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.54 E-value=0.001 Score=63.56 Aligned_cols=182 Identities=24% Similarity=0.154 Sum_probs=100.6
Q ss_pred CceeeccCCCCCCccc---------cccccccccccccCCCCchHhhh----cC-CCCcEEEccCCccccc----cchhh
Q 046000 14 LEALDLSFNNINGTVE---------SQESFELNLAKNNIGGHLLDCLN----NM-TRLKVLDTSFNQLSGS----LPSVI 75 (470)
Q Consensus 14 L~~L~ls~~~~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~i~~~----~~~~~ 75 (470)
+..|+|.+|.+.+... ...|..|++++|.+.+.....+. .. ..|++|++..|.+.+. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6667777776654333 66677777777777644332222 22 3456666666666532 33445
Q ss_pred hcCcCCcEEeccCccCcCccC---hhhhc----cccccceecccCCCCccccccccCCCCcccccCc-ccEEEccCcccc
Q 046000 76 VNLASVEYLDLSNSYFEGTFP---ISSLA----NHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHD-LKYLDLSHNNLA 147 (470)
Q Consensus 76 ~~l~~L~~L~l~~~~~~~~~~---~~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~i~ 147 (470)
.....++.++++.|.+..... ...+. ...+++.|.+.+|.+...... .....+...++ ++++++..|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--LLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--HHHHHHhccchhhHHHHHHhcCcc
Confidence 556667777777776531100 11222 355677777777765522222 12222333344 666788877766
Q ss_pred CccchHh---hhcC-CCCcEEEccccccCCccC----CCCCCCCcccEEeccCCcccC
Q 046000 148 GDFPAWI---LQNN-TKLEVLCLTNNSFTGNLQ----LPHSKHDFLHHLDVSSNNFTG 197 (470)
Q Consensus 148 ~~~~~~~---~~~~-~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~l~~~~~~~ 197 (470)
+...... +... ..++++++..|.++.... ..+..+++++++.+..+.+.+
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3322222 2223 456788888887764332 233455678888888887653
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.99 E-value=0.0029 Score=52.56 Aligned_cols=84 Identities=19% Similarity=0.135 Sum_probs=67.5
Q ss_pred cccCCCcCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCc
Q 046000 7 GLHKLKNLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVE 82 (470)
Q Consensus 7 ~l~~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 82 (470)
.+..++..++||++.|++-.... ++.+.+|+++.+.+. ..|+.+.....++.+++.+|..+ ..|.++.+.+.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 46778889999999887654333 778888999988887 67888888888888888888776 7888888889999
Q ss_pred EEeccCccCc
Q 046000 83 YLDLSNSYFE 92 (470)
Q Consensus 83 ~L~l~~~~~~ 92 (470)
++++..+.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888888754
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.34 E-value=0.021 Score=29.09 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=5.3
Q ss_pred CCCcEEEccCcccC
Q 046000 424 SNLRVLLLRGNYLE 437 (470)
Q Consensus 424 ~~L~~L~l~~n~i~ 437 (470)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34444444444444
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=0.014 Score=47.53 Aligned_cols=80 Identities=18% Similarity=0.099 Sum_probs=34.9
Q ss_pred ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC-cccccc--ccCcccEEEccCCc-ccccCccchhcCCCccEEE
Q 046000 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG-FMTSSF--SLSSLVHLYVQRND-LSGTIPNALFRSSKLMTLD 406 (470)
Q Consensus 331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~--~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~ 406 (470)
++.++.+++.+...--+.+..++.++.|.+.+|.-.+ ...... ..++|+.|++++|. |++-....+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 4455555554443333444445555555555543211 110000 24555555555543 4433334444455555555
Q ss_pred cCCc
Q 046000 407 LRDN 410 (470)
Q Consensus 407 l~~n 410 (470)
|.+-
T Consensus 183 l~~l 186 (221)
T KOG3864|consen 183 LYDL 186 (221)
T ss_pred hcCc
Confidence 4443
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.80 E-value=0.053 Score=27.54 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=9.2
Q ss_pred CCCcEEEccCCccccccch
Q 046000 55 TRLKVLDTSFNQLSGSLPS 73 (470)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~ 73 (470)
++|++|+|++|.|.+....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4566666666665544333
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.41 E-value=0.094 Score=27.21 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=10.2
Q ss_pred CCCCeEEccCcccccc
Q 046000 448 RRLGVMDLSHNRINGS 463 (470)
Q Consensus 448 ~~L~~l~l~~n~~~~~ 463 (470)
++|+.|++++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566777777776633
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.41 E-value=0.094 Score=27.21 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=10.2
Q ss_pred CCCCeEEccCcccccc
Q 046000 448 RRLGVMDLSHNRINGS 463 (470)
Q Consensus 448 ~~L~~l~l~~n~~~~~ 463 (470)
++|+.|++++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4566777777776633
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.44 E-value=0.25 Score=25.55 Aligned_cols=15 Identities=53% Similarity=0.552 Sum_probs=8.6
Q ss_pred CCCcEEEccCCcccc
Q 046000 55 TRLKVLDTSFNQLSG 69 (470)
Q Consensus 55 ~~L~~L~l~~~~i~~ 69 (470)
++|++|+|++|.++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455666666666653
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.44 E-value=0.25 Score=25.55 Aligned_cols=15 Identities=53% Similarity=0.552 Sum_probs=8.6
Q ss_pred CCCcEEEccCCcccc
Q 046000 55 TRLKVLDTSFNQLSG 69 (470)
Q Consensus 55 ~~L~~L~l~~~~i~~ 69 (470)
++|++|+|++|.++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 455666666666653
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.67 E-value=0.012 Score=49.10 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=54.3
Q ss_pred hhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcE
Q 046000 349 LLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRV 428 (470)
Q Consensus 349 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 428 (470)
+....+.+.||++.|++........-++.+..++++.|.+. ..|+.+.....+..+++.+|..+ -.|.++...++++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 44556666677777666555544434566666666666665 55565666666666666666665 35556666677777
Q ss_pred EEccCcccC
Q 046000 429 LLLRGNYLE 437 (470)
Q Consensus 429 L~l~~n~i~ 437 (470)
+++.++++.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 777666654
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.24 E-value=0.41 Score=24.72 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=13.2
Q ss_pred CCCCeEEccCcccccccCC
Q 046000 448 RRLGVMDLSHNRINGSIPS 466 (470)
Q Consensus 448 ~~L~~l~l~~n~~~~~~p~ 466 (470)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 45777788888877 7775
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.60 E-value=0.34 Score=25.66 Aligned_cols=18 Identities=33% Similarity=0.250 Sum_probs=10.8
Q ss_pred CCCcEEEccCcccCcccc
Q 046000 424 SNLRVLLLRGNYLEGPIS 441 (470)
Q Consensus 424 ~~L~~L~l~~n~i~~~~~ 441 (470)
++|++|+|++|.+.....
T Consensus 2 ~~L~~LdL~~N~i~~~G~ 19 (28)
T smart00368 2 PSLRELDLSNNKLGDEGA 19 (28)
T ss_pred CccCEEECCCCCCCHHHH
Confidence 456666776666654333
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=83.62 E-value=4.7 Score=38.01 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=48.1
Q ss_pred CcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCC---CCCCcccEEeccCCcccCCCCcchhhhh--c
Q 046000 134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPH---SKHDFLHHLDVSSNNFTGKLPQDKGIIL--Q 208 (470)
Q Consensus 134 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~ 208 (470)
+.+++++++.+.+.++.+..+.+.- --+.++.|..++.....+ ..-..+++++++.+...+.+|....... .
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~---~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPG---NPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred chhhhhccCCCcccccCCccccCCC---CccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 4456777777766655554332211 113444444332111110 1122466777777766655554433221 1
Q ss_pred cCceeeccCCccC---CCCchhhcCCCCccEEEccccc
Q 046000 209 KLLYIDMANNRFE---GNLPSSIGDMKTLTFLHLSKNN 243 (470)
Q Consensus 209 ~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~ 243 (470)
-+++++.+...+. ...+..++.-..+++.+++.|.
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng 279 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNG 279 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCC
Confidence 2455555554432 1112223334456666665554
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.88 E-value=1.5 Score=22.72 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=8.4
Q ss_pred CCCCeEEccCcccc
Q 046000 448 RRLGVMDLSHNRIN 461 (470)
Q Consensus 448 ~~L~~l~l~~n~~~ 461 (470)
+.|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666665
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.43 E-value=1.9 Score=41.30 Aligned_cols=35 Identities=26% Similarity=0.145 Sum_probs=16.3
Q ss_pred cCCCeEEEccCccccCcccccc---ccCcccEEEccCC
Q 046000 352 HGSLQLLSVSENCLSGFMTSSF---SLSSLVHLYVQRN 386 (470)
Q Consensus 352 ~~~L~~L~l~~~~l~~~~~~~~---~~~~L~~L~l~~~ 386 (470)
.+.+..+++++|++..+....- ..|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3445555555555443332221 3455555555555
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.51 E-value=2.3 Score=40.81 Aligned_cols=63 Identities=27% Similarity=0.315 Sum_probs=44.6
Q ss_pred ccCcccEEEccCCcccccC--ccchhcCCCccEEEcCCc--cceeecchhhhc--CCCCcEEEccCcccCc
Q 046000 374 SLSSLVHLYVQRNDLSGTI--PNALFRSSKLMTLDLRDN--GFSGIISDQINE--SSNLRVLLLRGNYLEG 438 (470)
Q Consensus 374 ~~~~L~~L~l~~~~l~~~~--~~~l~~~~~L~~L~l~~n--~l~~~~~~~~~~--~~~L~~L~l~~n~i~~ 438 (470)
+.+.+..++|++|++.... ..--...|.|+.|+|++| .+.. ..++.+ ...|++|-+.||++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 5789999999999986442 112234599999999999 4432 123333 3568999999999865
No 92
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=61.22 E-value=6.1 Score=20.25 Aligned_cols=11 Identities=55% Similarity=0.471 Sum_probs=5.8
Q ss_pred CcCceeeccCC
Q 046000 12 KNLEALDLSFN 22 (470)
Q Consensus 12 ~~L~~L~ls~~ 22 (470)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=53.83 E-value=59 Score=31.10 Aligned_cols=281 Identities=17% Similarity=0.022 Sum_probs=136.1
Q ss_pred CCcCceeeccCCCCCCccc---cccccccccccccCCCCchHhh---hcCCCCcEEEccCCccccccchhhhcC---cCC
Q 046000 11 LKNLEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCL---NNMTRLKVLDTSFNQLSGSLPSVIVNL---ASV 81 (470)
Q Consensus 11 ~~~L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~~~~~~~~l---~~L 81 (470)
-+.++.+|++.|.+.+..+ ...-.-+.++.|..+...-..+ +.=..+.+++++.|...+..|..+..+ .-+
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~vl 243 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLVL 243 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhhh
Confidence 4567888999998865544 1111226667776654321111 112357888998888777777665443 236
Q ss_pred cEEeccCccCcC--ccChhhhccccccceecccCCCCccc--cccccCCCCcccccCcccEEEccCccccCccchHhhhc
Q 046000 82 EYLDLSNSYFEG--TFPISSLANHSKLKVLRLSSRNNNML--QLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQN 157 (470)
Q Consensus 82 ~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 157 (470)
+.++.+...+.- .+.......-+++.+.+++.+..... .......-..+..-.++ +|++..++...+-+..++-.
T Consensus 244 ~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLg 322 (553)
T KOG4242|consen 244 FKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLG 322 (553)
T ss_pred hcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcc
Confidence 677777665431 11112333455677777666554322 22222333344444566 77777765543322222211
Q ss_pred C-C----CCcEEEccccccCCc-cCCCCCCCCcccEEeccCCcccCCCCcch-hhhhccCceeeccCCccCC-----CCc
Q 046000 158 N-T----KLEVLCLTNNSFTGN-LQLPHSKHDFLHHLDVSSNNFTGKLPQDK-GIILQKLLYIDMANNRFEG-----NLP 225 (470)
Q Consensus 158 ~-~----~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-----~~~ 225 (470)
. + .=-.+++..|..... .......-..++++.+.++...++..... ....+..+.+++.+-.-.. ...
T Consensus 323 la~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a 402 (553)
T KOG4242|consen 323 LAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEA 402 (553)
T ss_pred cccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceeccccccc
Confidence 1 0 012334444443321 11222233347777777776654433221 0112234444443322110 000
Q ss_pred hh----hcCCCCccEEEccccccccccC---ccccCCCcccEEecCCCcCCCcchhh----hcCcccccEEEcccccc
Q 046000 226 SS----IGDMKTLTFLHLSKNNFSGELS---TLFTGCVSLWFLDRSHNNFHDQIFPK----YMNLTRLWFLYLDNNKF 292 (470)
Q Consensus 226 ~~----l~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~l~l~~~~~ 292 (470)
.. -...--++.+.++.+....... .....-+.+..|++++|...+..... .....+++.+..+.+..
T Consensus 403 ~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 403 PPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred hhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 00 0122245566666665543222 22334567888888888776644333 33344556666555544
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=30.69 E-value=31 Score=40.67 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=25.5
Q ss_pred EccCCcccccCccchhcCCCccEEEcCCccce
Q 046000 382 YVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS 413 (470)
Q Consensus 382 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 413 (470)
+|++|+|..+.+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 47788888666677888888888888888873
Done!