Query 046000
Match_columns 470
No_of_seqs 242 out of 3051
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 13:15:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.3E-54 1.1E-58 439.3 34.5 455 8-467 174-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-53 4.8E-58 434.7 31.6 451 5-469 93-559 (768)
3 3t6q_A CD180 antigen; protein- 100.0 7.9E-50 2.7E-54 398.6 36.9 451 3-467 26-542 (606)
4 3t6q_A CD180 antigen; protein- 100.0 1.3E-49 4.4E-54 397.1 31.5 450 5-466 50-565 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-48 1.1E-52 387.0 29.4 437 12-466 32-563 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-47 1.2E-51 384.6 34.9 112 5-117 42-158 (680)
7 1ziw_A TOLL-like receptor 3; i 100.0 8.8E-47 3E-51 381.6 37.2 451 3-465 18-601 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 5.1E-47 1.8E-51 378.3 30.7 420 5-438 49-559 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 1.3E-46 4.5E-51 373.0 31.4 445 3-467 21-537 (570)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.6E-46 5.5E-51 386.6 29.2 451 10-469 22-547 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-44 5E-49 356.5 28.3 437 12-465 26-514 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 3E-44 1E-48 356.1 29.8 438 13-469 8-515 (570)
13 3j0a_A TOLL-like receptor 5; m 100.0 5.6E-44 1.9E-48 367.7 26.8 442 15-468 7-524 (844)
14 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-43 8.8E-48 345.0 29.1 431 15-465 3-485 (520)
15 4eco_A Uncharacterized protein 100.0 2E-43 6.7E-48 351.9 20.8 416 31-462 81-601 (636)
16 4eco_A Uncharacterized protein 100.0 7.4E-43 2.5E-47 347.8 24.8 440 3-461 96-632 (636)
17 4ecn_A Leucine-rich repeat pro 100.0 4.2E-42 1.4E-46 347.6 25.0 423 31-467 323-846 (876)
18 2z81_A CD282 antigen, TOLL-lik 100.0 8.7E-42 3E-46 336.6 26.5 420 5-441 43-514 (549)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-41 5E-46 332.5 21.3 417 2-439 13-483 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 9.1E-41 3.1E-45 337.8 26.9 399 55-469 323-826 (876)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.3E-40 1.1E-44 325.4 26.9 436 10-466 29-515 (562)
22 4g8a_A TOLL-like receptor 4; l 100.0 4.1E-39 1.4E-43 323.7 31.0 441 13-464 53-583 (635)
23 3v47_A TOLL-like receptor 5B a 100.0 5.9E-39 2E-43 309.0 28.7 368 55-466 30-413 (455)
24 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-37 4E-42 313.1 28.5 453 4-469 20-563 (635)
25 3v47_A TOLL-like receptor 5B a 100.0 7.2E-38 2.5E-42 301.4 24.9 388 13-441 11-412 (455)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-38 6.9E-43 312.7 17.5 416 3-439 45-512 (562)
27 1jl5_A Outer protein YOPM; leu 100.0 3.3E-37 1.1E-41 293.9 23.6 389 10-468 9-418 (454)
28 1o6v_A Internalin A; bacterial 100.0 2.6E-35 9E-40 283.5 31.6 344 30-413 45-388 (466)
29 1o6v_A Internalin A; bacterial 100.0 3.9E-35 1.3E-39 282.4 31.4 347 52-438 43-389 (466)
30 1jl5_A Outer protein YOPM; leu 100.0 1E-35 3.6E-40 283.5 23.1 376 2-466 24-434 (454)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-35 4.1E-40 283.3 20.6 360 40-469 27-395 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 5.2E-35 1.8E-39 282.8 24.2 329 134-466 32-361 (477)
33 2id5_A Lingo-1, leucine rich r 100.0 7.3E-35 2.5E-39 281.8 22.5 324 136-465 13-337 (477)
34 4fmz_A Internalin; leucine ric 100.0 1.1E-32 3.8E-37 255.3 29.1 304 133-461 43-346 (347)
35 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-33 5.5E-38 268.7 22.8 348 6-419 36-393 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 1.2E-32 4.1E-37 259.1 26.6 309 133-462 44-353 (390)
37 4fmz_A Internalin; leucine ric 100.0 1.7E-31 5.8E-36 247.4 28.4 307 75-437 40-346 (347)
38 3o6n_A APL1; leucine-rich repe 100.0 6.1E-32 2.1E-36 254.3 24.7 264 131-438 90-353 (390)
39 3oja_B Anopheles plasmodium-re 100.0 4.3E-32 1.5E-36 268.9 24.2 310 133-463 50-360 (597)
40 1z7x_W Ribonuclease inhibitor; 100.0 4.7E-35 1.6E-39 282.3 2.9 382 31-438 3-441 (461)
41 1z7x_W Ribonuclease inhibitor; 100.0 7.6E-35 2.6E-39 280.8 3.2 380 55-465 3-444 (461)
42 3oja_B Anopheles plasmodium-re 100.0 1.8E-30 6.3E-35 257.2 25.0 264 131-438 96-359 (597)
43 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-31 9.9E-36 241.1 15.6 249 184-460 51-303 (313)
44 1xku_A Decorin; proteoglycan, 100.0 1.6E-29 5.6E-34 232.1 25.8 267 184-459 53-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 4.8E-30 1.6E-34 235.7 22.2 287 160-459 34-331 (332)
46 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-29 7.9E-34 231.2 22.2 292 13-364 34-331 (332)
47 1xku_A Decorin; proteoglycan, 100.0 4.5E-29 1.5E-33 229.2 23.6 289 105-435 32-330 (330)
48 3ogk_B Coronatine-insensitive 100.0 4.2E-31 1.4E-35 262.9 10.3 425 5-458 66-548 (592)
49 3ogk_B Coronatine-insensitive 100.0 2.7E-31 9.2E-36 264.3 8.9 410 46-463 64-528 (592)
50 1ogq_A PGIP-2, polygalacturona 100.0 9.9E-30 3.4E-34 231.0 17.1 250 159-436 50-303 (313)
51 2z80_A TOLL-like receptor 2, v 100.0 2.9E-28 9.9E-33 225.9 17.1 256 209-465 53-318 (353)
52 2p1m_B Transport inhibitor res 100.0 1.8E-30 6E-35 258.6 1.4 158 7-168 61-244 (594)
53 2p1m_B Transport inhibitor res 100.0 2.6E-29 8.8E-34 250.2 5.3 423 30-460 65-543 (594)
54 2z66_A Variable lymphocyte rec 100.0 1.2E-27 4.2E-32 217.2 15.4 259 209-469 29-295 (306)
55 2z66_A Variable lymphocyte rec 99.9 8E-27 2.7E-31 211.8 20.2 249 211-464 10-264 (306)
56 2z80_A TOLL-like receptor 2, v 99.9 4.5E-27 1.5E-31 217.8 16.2 279 133-441 30-318 (353)
57 3zyj_A Leucine-rich repeat-con 99.9 4E-26 1.4E-30 217.8 22.7 248 185-461 45-292 (440)
58 3zyi_A Leucine-rich repeat-con 99.9 5.5E-26 1.9E-30 217.7 22.3 249 185-462 56-304 (452)
59 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-26 4.5E-31 208.1 16.8 223 186-437 14-238 (285)
60 4fcg_A Uncharacterized protein 99.9 2.3E-26 7.8E-31 210.0 18.1 234 208-461 81-314 (328)
61 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-27 4.9E-32 217.4 9.3 267 185-466 12-281 (317)
62 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-26 6.3E-31 207.1 16.4 268 161-458 13-284 (285)
63 3zyj_A Leucine-rich repeat-con 99.9 1.7E-25 5.7E-30 213.6 21.1 246 160-412 44-291 (440)
64 3zyi_A Leucine-rich repeat-con 99.9 2.3E-25 8E-30 213.3 20.9 247 160-413 55-303 (452)
65 4fcg_A Uncharacterized protein 99.9 2.9E-25 1E-29 202.7 18.6 235 182-438 80-315 (328)
66 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-24 7.8E-29 211.4 23.7 269 134-448 40-308 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 5.1E-26 1.7E-30 207.2 10.9 243 209-466 11-256 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-24 1.3E-28 209.8 23.6 270 103-424 39-308 (622)
69 3oja_A Leucine-rich immune mol 99.9 3.2E-25 1.1E-29 213.3 13.5 236 207-456 33-270 (487)
70 1wwl_A Monocyte differentiatio 99.9 2.5E-26 8.7E-31 208.7 3.7 248 181-462 41-310 (312)
71 1wwl_A Monocyte differentiatio 99.9 2.1E-25 7.3E-30 202.6 9.1 251 156-438 40-310 (312)
72 3oja_A Leucine-rich immune mol 99.9 1.5E-24 5E-29 208.8 12.3 222 230-466 32-256 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 5.4E-23 1.8E-27 183.6 18.6 220 213-437 12-237 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 1E-22 3.6E-27 181.7 19.0 205 209-414 29-238 (276)
75 2ca6_A RAN GTPase-activating p 99.9 7E-24 2.4E-28 198.9 9.6 241 224-464 24-319 (386)
76 3goz_A Leucine-rich repeat-con 99.9 1.3E-23 4.3E-28 195.1 11.2 253 188-441 3-301 (362)
77 3rfs_A Internalin B, repeat mo 99.9 6.1E-23 2.1E-27 182.5 15.1 223 208-468 19-242 (272)
78 2o6q_A Variable lymphocyte rec 99.9 4.3E-22 1.5E-26 176.9 19.4 202 233-438 17-219 (270)
79 2ast_B S-phase kinase-associat 99.9 3.4E-23 1.2E-27 190.7 12.2 254 184-468 48-313 (336)
80 1p9a_G Platelet glycoprotein I 99.9 8.9E-22 3.1E-26 176.2 18.4 203 228-438 6-209 (290)
81 2o6q_A Variable lymphocyte rec 99.9 1.6E-21 5.6E-26 173.1 19.5 201 209-413 17-218 (270)
82 3rfs_A Internalin B, repeat mo 99.9 1.7E-22 5.9E-27 179.6 12.6 229 182-449 18-247 (272)
83 3goz_A Leucine-rich repeat-con 99.9 2.3E-23 7.9E-28 193.4 7.0 254 164-417 3-301 (362)
84 1p9a_G Platelet glycoprotein I 99.9 2.6E-21 9.1E-26 173.1 18.5 200 206-413 8-208 (290)
85 2ast_B S-phase kinase-associat 99.9 5.2E-22 1.8E-26 182.7 11.6 200 159-364 47-258 (336)
86 2ca6_A RAN GTPase-activating p 99.9 6.6E-23 2.3E-27 192.3 5.5 250 207-457 31-339 (386)
87 1h6u_A Internalin H; cell adhe 99.9 8.2E-21 2.8E-25 171.7 17.7 211 210-438 21-231 (308)
88 3m19_A Variable lymphocyte rec 99.9 1.8E-20 6.1E-25 164.5 17.1 179 257-439 15-194 (251)
89 2xwt_C Thyrotropin receptor; s 99.9 4.7E-21 1.6E-25 167.0 13.0 195 233-458 32-236 (239)
90 4glp_A Monocyte differentiatio 99.8 3.1E-21 1.1E-25 175.0 11.0 206 54-270 90-308 (310)
91 4glp_A Monocyte differentiatio 99.8 4.6E-21 1.6E-25 173.9 10.3 204 233-462 92-308 (310)
92 2xwt_C Thyrotropin receptor; s 99.8 1.3E-20 4.5E-25 164.2 12.3 186 281-469 32-226 (239)
93 1h6u_A Internalin H; cell adhe 99.8 5.8E-20 2E-24 166.1 16.9 193 206-414 39-231 (308)
94 3m19_A Variable lymphocyte rec 99.8 2.4E-19 8.3E-24 157.3 16.9 178 233-414 15-193 (251)
95 4ay9_X Follicle-stimulating ho 99.8 8E-19 2.7E-23 161.9 16.2 198 186-389 12-215 (350)
96 2o6s_A Variable lymphocyte rec 99.8 4.5E-19 1.5E-23 150.9 12.5 179 259-448 10-189 (208)
97 4ay9_X Follicle-stimulating ho 99.8 1.5E-18 5E-23 160.1 14.2 242 162-412 12-258 (350)
98 2v70_A SLIT-2, SLIT homolog 2 99.8 2.5E-18 8.5E-23 147.2 13.5 153 308-464 15-169 (220)
99 3cvr_A Invasion plasmid antige 99.8 1.7E-18 5.9E-23 167.7 13.6 188 233-448 60-254 (571)
100 1h6t_A Internalin B; cell adhe 99.8 7.1E-18 2.4E-22 151.0 15.0 172 253-438 43-214 (291)
101 2v9t_B SLIT homolog 2 protein 99.8 4.8E-18 1.6E-22 145.4 12.9 151 283-437 14-165 (220)
102 2o6s_A Variable lymphocyte rec 99.8 1.1E-17 3.8E-22 142.2 14.9 149 137-290 10-158 (208)
103 3e6j_A Variable lymphocyte rec 99.8 9E-18 3.1E-22 144.8 14.4 133 331-464 42-175 (229)
104 1h6t_A Internalin B; cell adhe 99.7 2.1E-17 7.1E-22 148.0 14.3 191 209-415 25-215 (291)
105 1m9s_A Internalin B; cell inva 99.7 1.4E-17 4.7E-22 163.3 13.4 188 235-438 24-211 (605)
106 1xeu_A Internalin C; cellular 99.7 8.7E-18 3E-22 148.0 10.5 169 255-438 18-186 (263)
107 3cvr_A Invasion plasmid antige 99.7 4.7E-17 1.6E-21 157.7 16.2 188 209-424 60-254 (571)
108 1m9s_A Internalin B; cell inva 99.7 3.4E-17 1.1E-21 160.6 14.2 187 12-221 21-210 (605)
109 3sb4_A Hypothetical leucine ri 99.7 1.8E-17 6E-22 151.6 10.9 263 182-455 48-328 (329)
110 3sb4_A Hypothetical leucine ri 99.7 4.4E-17 1.5E-21 149.0 13.0 288 134-431 25-328 (329)
111 2xot_A Amphoterin-induced prot 99.7 2.4E-17 8.2E-22 152.6 11.3 175 259-461 21-202 (361)
112 4ezg_A Putative uncharacterize 99.7 6.1E-17 2.1E-21 136.2 12.4 150 304-462 44-195 (197)
113 2v9t_B SLIT homolog 2 protein 99.7 9E-17 3.1E-21 137.5 12.3 151 259-413 14-165 (220)
114 3e6j_A Variable lymphocyte rec 99.7 1.9E-16 6.6E-21 136.4 13.7 151 14-197 21-173 (229)
115 2ell_A Acidic leucine-rich nuc 99.7 1.3E-16 4.5E-21 130.6 11.1 137 330-468 25-166 (168)
116 1w8a_A SLIT protein; signaling 99.7 2.1E-16 7.3E-21 132.1 11.8 128 307-438 11-140 (192)
117 2xot_A Amphoterin-induced prot 99.7 1.7E-16 5.7E-21 146.9 12.2 154 307-465 21-179 (361)
118 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-15 4.1E-20 130.5 15.2 137 185-321 34-170 (220)
119 1xeu_A Internalin C; cellular 99.7 1.4E-16 4.8E-21 140.2 9.6 165 11-196 18-185 (263)
120 4ezg_A Putative uncharacterize 99.7 4.7E-16 1.6E-20 130.8 11.3 103 331-437 90-194 (197)
121 2je0_A Acidic leucine-rich nuc 99.6 6E-16 2.1E-20 123.8 9.7 128 329-457 17-149 (149)
122 1dce_A Protein (RAB geranylger 99.6 1.6E-17 5.5E-22 161.9 0.3 105 355-463 443-548 (567)
123 1dce_A Protein (RAB geranylger 99.6 2.7E-17 9.1E-22 160.3 1.4 197 253-455 346-567 (567)
124 2wfh_A SLIT homolog 2 protein 99.6 2E-15 6.9E-20 126.1 12.5 126 307-437 13-139 (193)
125 4fdw_A Leucine rich hypothetic 99.6 9.4E-15 3.2E-19 136.2 17.6 241 209-461 136-383 (401)
126 2o6r_A Variable lymphocyte rec 99.6 2.4E-15 8.2E-20 124.2 12.1 131 332-465 10-141 (177)
127 4fs7_A Uncharacterized protein 99.6 1.5E-14 5.3E-19 135.5 18.8 101 348-453 292-393 (394)
128 1w8a_A SLIT protein; signaling 99.6 1.2E-15 4E-20 127.6 9.3 108 305-413 30-139 (192)
129 4fs7_A Uncharacterized protein 99.6 5.4E-14 1.8E-18 131.8 19.2 230 225-469 155-385 (394)
130 4fdw_A Leucine rich hypothetic 99.6 6E-14 2.1E-18 130.7 19.2 249 207-469 112-366 (401)
131 2ell_A Acidic leucine-rich nuc 99.6 9.2E-15 3.1E-19 119.5 9.7 134 302-438 22-161 (168)
132 1ds9_A Outer arm dynein; leuci 99.5 3E-16 1E-20 132.1 -0.6 153 303-462 17-186 (198)
133 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-14 6.2E-19 118.6 9.9 105 354-461 43-153 (176)
134 4b8c_D Glucose-repressible alc 99.5 1.4E-15 4.7E-20 153.1 3.5 191 256-458 173-369 (727)
135 4b8c_D Glucose-repressible alc 99.5 4.7E-15 1.6E-19 149.2 7.0 184 280-469 173-362 (727)
136 2wfh_A SLIT homolog 2 protein 99.5 4.7E-14 1.6E-18 117.7 11.8 126 333-461 14-139 (193)
137 2o6r_A Variable lymphocyte rec 99.5 8.9E-14 3E-18 114.7 12.0 131 307-441 10-141 (177)
138 3g39_A Variable lymphocyte rec 99.5 7.1E-14 2.4E-18 114.1 10.4 105 356-462 12-116 (170)
139 2je0_A Acidic leucine-rich nuc 99.5 7E-14 2.4E-18 111.7 9.4 100 331-432 44-148 (149)
140 1a9n_A U2A', U2A'; complex (nu 99.5 2.4E-13 8.1E-18 111.9 11.0 114 349-466 15-130 (176)
141 2r9u_A Variable lymphocyte rec 99.5 2.4E-13 8.2E-18 111.3 10.6 104 356-461 15-118 (174)
142 3un9_A NLR family member X1; l 99.5 1.1E-14 3.9E-19 134.3 2.3 158 304-461 101-283 (372)
143 1ds9_A Outer arm dynein; leuci 99.4 5.6E-15 1.9E-19 124.3 -0.6 133 299-438 43-186 (198)
144 4gt6_A Cell surface protein; l 99.4 2.2E-11 7.5E-16 114.0 20.9 123 331-460 267-390 (394)
145 3un9_A NLR family member X1; l 99.4 1.2E-13 4.2E-18 127.4 4.2 161 303-463 71-254 (372)
146 4gt6_A Cell surface protein; l 99.4 5.6E-11 1.9E-15 111.2 21.1 112 345-460 257-369 (394)
147 3g39_A Variable lymphocyte rec 99.4 3E-12 1E-16 104.4 9.9 105 331-438 11-116 (170)
148 2r9u_A Variable lymphocyte rec 99.3 5.2E-12 1.8E-16 103.3 9.7 103 307-413 15-118 (174)
149 4h09_A Hypothetical leucine ri 99.3 8.6E-10 3E-14 102.7 21.7 303 129-448 41-356 (379)
150 2ifg_A High affinity nerve gro 99.2 5E-11 1.7E-15 109.6 10.4 102 333-437 12-116 (347)
151 2ifg_A High affinity nerve gro 99.1 1.2E-10 4.1E-15 107.2 8.3 102 358-461 13-116 (347)
152 4h09_A Hypothetical leucine ri 99.1 1.4E-08 4.7E-13 94.5 19.6 169 252-427 190-359 (379)
153 2ra8_A Uncharacterized protein 99.0 4.1E-10 1.4E-14 102.9 8.8 156 298-459 166-341 (362)
154 2ra8_A Uncharacterized protein 98.9 2.8E-09 9.7E-14 97.3 8.0 139 320-462 164-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.9 1.2E-09 4.1E-14 90.1 4.0 115 347-461 30-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 4.2E-09 1.4E-13 86.8 3.9 126 5-147 29-164 (185)
157 3e4g_A ATP synthase subunit S, 98.7 5E-09 1.7E-13 83.8 3.9 82 377-458 62-149 (176)
158 3e4g_A ATP synthase subunit S, 98.5 4.7E-08 1.6E-12 78.2 3.2 86 353-438 61-154 (176)
159 3rw6_A Nuclear RNA export fact 98.5 3.6E-08 1.2E-12 85.2 2.1 79 374-454 168-257 (267)
160 3rw6_A Nuclear RNA export fact 98.5 6.5E-08 2.2E-12 83.6 3.3 65 52-117 167-233 (267)
161 1pgv_A TMD-1, tropomodulin TMD 98.0 4E-06 1.4E-10 68.4 3.7 109 351-459 39-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.9 4.5E-06 1.6E-10 68.1 2.1 46 47-92 62-111 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0016 5.5E-08 49.4 5.4 54 357-412 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.002 7E-08 48.9 5.9 38 400-437 31-68 (130)
165 2lz0_A Uncharacterized protein 78.1 1.4 4.8E-05 31.2 2.6 47 42-89 7-53 (100)
166 2lz0_A Uncharacterized protein 72.8 5.1 0.00017 28.2 4.4 49 385-434 5-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.3e-54 Score=439.30 Aligned_cols=455 Identities=31% Similarity=0.414 Sum_probs=356.6
Q ss_pred ccCCCcCceeeccCCCCCCccc---cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEE
Q 046000 8 LHKLKNLEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYL 84 (470)
Q Consensus 8 l~~~~~L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 84 (470)
+.++++|++|++++|.+.+..+ +++|++|++++|.+.+.+|. ++++++|++|++++|.+.+..|..+..+++|++|
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred hccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 6677778888887777665443 67777777777777766665 7777777777777777776777777777777777
Q ss_pred eccCccCcCccChhhhccccccceecccCCCCcc-ccccc------------------cCCCCcccccCcccEEEccCcc
Q 046000 85 DLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNM-LQLKT------------------ENFLPTFQLKHDLKYLDLSHNN 145 (470)
Q Consensus 85 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~------------------~~~~~~~~~~~~L~~L~l~~~~ 145 (470)
++++|.+.+..+.. .+++|++|++++|.+.. ..... ...+..+..+++|++|++++|.
T Consensus 253 ~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 253 NISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp ECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred ECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 77777766544421 55566666666554431 00000 0223345555666666666666
Q ss_pred ccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCC-cccEEeccCCcccCCCCcchhh-hhccCceeeccCCccCCC
Q 046000 146 LAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHD-FLHHLDVSSNNFTGKLPQDKGI-ILQKLLYIDMANNRFEGN 223 (470)
Q Consensus 146 i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~ 223 (470)
+.+.+|...+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+.+..+..... .++.|++|++++|.+.+.
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 66666665555666777777776666655555555554 6777777777666555544332 146788888888888777
Q ss_pred CchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCC
Q 046000 224 LPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS 303 (470)
Q Consensus 224 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 303 (470)
.|..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.+++++|.+.+..+..+..+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 489 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence 88889999999999999999888888888999999999999999988888888899999999999999998888889999
Q ss_pred CCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC-ccccc----------
Q 046000 304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG-FMTSS---------- 372 (470)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~---------- 372 (470)
++|+.|++++|++.+.+|.++..+.. +++|++++|.+.+.+|..+..+++|+.|++++|.+.. +|...
T Consensus 490 ~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 490 TNLNWISLSNNRLTGEIPKWIGRLEN-LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCEEEccCCccCCcCChHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 99999999999999899999888877 9999999999998999999999999999999998762 22211
Q ss_pred ------------------------------------------------------------cccCcccEEEccCCcccccC
Q 046000 373 ------------------------------------------------------------FSLSSLVHLYVQRNDLSGTI 392 (470)
Q Consensus 373 ------------------------------------------------------------~~~~~L~~L~l~~~~l~~~~ 392 (470)
..+++|+.|++++|++++.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 12467999999999999999
Q ss_pred ccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCC
Q 046000 393 PNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSC 467 (470)
Q Consensus 393 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~ 467 (470)
|..+..+++|+.|++++|++++.+|+.++.+++|+.|+|++|++++.+|..+.+++.|++|++++|+++|.+|+.
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999974
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-53 Score=434.67 Aligned_cols=451 Identities=31% Similarity=0.405 Sum_probs=368.7
Q ss_pred cccccCCCcCceeeccCCCCCCc-------cccccccccccccccCCCCchHhh-hcCCCCcEEEccCCccccccchh--
Q 046000 5 GAGLHKLKNLEALDLSFNNINGT-------VESQESFELNLAKNNIGGHLLDCL-NNMTRLKVLDTSFNQLSGSLPSV-- 74 (470)
Q Consensus 5 ~~~l~~~~~L~~L~ls~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~~~~~~-- 74 (470)
|+.++++++|++|||++|.+.+. ..+++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence 35666777777777777766532 225667777777777665555554 66777777777777776665555
Q ss_pred -hhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchH
Q 046000 75 -IVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAW 153 (470)
Q Consensus 75 -~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 153 (470)
+.++++|++|++++|.+.+..+ +..+++|++|++++|.+. ...+.+..+++|++|++++|.+.+.++..
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~-------~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 242 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFS-------TGIPFLGDCSALQHLDISGNKLSGDFSRA 242 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCC-------SCCCBCTTCCSCCEEECCSSCCCSCHHHH
T ss_pred hhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCC-------CCCcccccCCCCCEEECcCCcCCCcccHH
Confidence 5667777777777777765544 266777888888777654 22334677788999999999888555554
Q ss_pred hhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCC
Q 046000 154 ILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKT 233 (470)
Q Consensus 154 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 233 (470)
+..+++|++|++++|.+.+..+.. .+++|++|++++|.+.+.+|..++..+++|++|++++|.+.+..|..|+.+++
T Consensus 243 -l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 243 -ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp -TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred -HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 457888999999988877544333 78889999999999888888887776689999999999988888888999999
Q ss_pred ccEEEccccccccccCc-cccCCCcccEEecCCCcCCCcchhhhcCcc-cccEEEccccccccccchhhcC--CCCccEE
Q 046000 234 LTFLHLSKNNFSGELST-LFTGCVSLWFLDRSHNNFHDQIFPKYMNLT-RLWFLYLDNNKFSGKIEDGLLK--SNQLKEL 309 (470)
Q Consensus 234 L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~--~~~L~~L 309 (470)
|+.|++++|.+.+..+. .+..+++|++|++++|.+....+..+..++ +|+.+++++|.+.+..+..+.. +++|++|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 99999999988755554 488899999999999988766777777776 8999999999988776666665 7889999
Q ss_pred ECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcc
Q 046000 310 DMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDL 388 (470)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l 388 (470)
++++|.+.+.+|..+..+.. ++.|++++|.+.+..|..+..+++|+.|++++|.+....+..+ .+++|++|++++|++
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCccccccCHHHhcCCC-CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 99999999889998888877 9999999999998999999999999999999999986555444 789999999999999
Q ss_pred cccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCc
Q 046000 389 SGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCF 468 (470)
Q Consensus 389 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~ 468 (470)
.+..|..+..+++|+.|++++|++.+.+|..++.+++|++|++++|++.+.+|..+..+++|+.|++++|++++.+|.++
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 98999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c
Q 046000 469 T 469 (470)
Q Consensus 469 ~ 469 (470)
.
T Consensus 559 ~ 559 (768)
T 3rgz_A 559 F 559 (768)
T ss_dssp G
T ss_pred h
Confidence 4
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.9e-50 Score=398.65 Aligned_cols=451 Identities=21% Similarity=0.179 Sum_probs=280.3
Q ss_pred cccccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhc
Q 046000 3 FLGAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVN 77 (470)
Q Consensus 3 ~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 77 (470)
.+|..+.+ ++++||+++|.+.+..+ +++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..|.++..
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 45554443 78899999998876543 788889999999888888888899999999999999888777888888
Q ss_pred CcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhc
Q 046000 78 LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQN 157 (470)
Q Consensus 78 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 157 (470)
+++|++|++++|.+.+. +...+..+++|++|++++|.+..... +.+..+++|++|++++|.+. .++...+..
T Consensus 104 l~~L~~L~L~~n~i~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~ 175 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSI-DFIPLHNQKTLESLYLGSNHISSIKL------PKGFPTEKLKVLDFQNNAIH-YLSKEDMSS 175 (606)
T ss_dssp CTTCCEEECTTSCCSCG-GGSCCTTCTTCCEEECCSSCCCCCCC------CTTCCCTTCCEEECCSSCCC-EECHHHHHT
T ss_pred cccccEeeccccCcccC-CcchhccCCcccEEECCCCcccccCc------ccccCCcccCEEEcccCccc-ccChhhhhh
Confidence 99999999999988743 33567888889999998887663221 22333677888888888887 555555667
Q ss_pred CCCCc--EEEccccccCCccCCCCCCC---------------------------------------------------Cc
Q 046000 158 NTKLE--VLCLTNNSFTGNLQLPHSKH---------------------------------------------------DF 184 (470)
Q Consensus 158 ~~~L~--~L~l~~~~i~~~~~~~~~~~---------------------------------------------------~~ 184 (470)
+++++ .+++++|.+....+..+... .+
T Consensus 176 l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 176 LQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred hcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 77777 77777777664433322210 04
Q ss_pred ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecC
Q 046000 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRS 264 (470)
Q Consensus 185 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 264 (470)
++.+++++|.+. .++...+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+....+..+..+++|++|+++
T Consensus 256 L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 256 VESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred eeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 555555555555 344444444666666666666665 455556666666666666666665555555666666666666
Q ss_pred CCcCCCcc-hhhhcCcccccEEEcccccccccc--chhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcc
Q 046000 265 HNNFHDQI-FPKYMNLTRLWFLYLDNNKFSGKI--EDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFL 341 (470)
Q Consensus 265 ~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 341 (470)
+|.+.... ...+..+++|+.+++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+.. ++.|++++|.+
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l 412 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTRL 412 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT-CSEEECTTCCE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc-CCeEECCCCcC
Confidence 66554322 223555666666666666555433 344555566666666666555444444444443 56666666655
Q ss_pred cCCCch-hhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCccccc---CccchhcCCCccEEEcCCccceeec
Q 046000 342 KGNIPM-QLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGT---IPNALFRSSKLMTLDLRDNGFSGII 416 (470)
Q Consensus 342 ~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~---~~~~l~~~~~L~~L~l~~n~l~~~~ 416 (470)
.+..+. .+..+++|+.|++++|.+...++..+ .+++|++|++++|++.+. .+..+..+++|+.|++++|++.+..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 543332 24555566666666665555444333 455566666666655431 1234555556666666666655555
Q ss_pred chhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCC
Q 046000 417 SDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSC 467 (470)
Q Consensus 417 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~ 467 (470)
+..+..+++|++|++++|++++..|..+..++.| .|++++|++++..|..
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~ 542 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGG
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhh
Confidence 5555555666666666666555555555555555 5555666555544443
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.3e-49 Score=397.10 Aligned_cols=450 Identities=21% Similarity=0.158 Sum_probs=382.5
Q ss_pred cccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCc
Q 046000 5 GAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLA 79 (470)
Q Consensus 5 ~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~ 79 (470)
|++++++++|++|++++|++.+..+ +++|++|++++|.+++..|.+|+++++|++|++++|.+.+..+..+..++
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCC
Confidence 6789999999999999999876543 88999999999999988899999999999999999999977788899999
Q ss_pred CCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCccc--EEEccCccccCccchHhhh-
Q 046000 80 SVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLK--YLDLSHNNLAGDFPAWILQ- 156 (470)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~i~~~~~~~~~~- 156 (470)
+|++|++++|.+.+... ..+..+++|++|++++|.+..... ..+..+++|+ ++++++|.+.+..+. .+.
T Consensus 130 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~l~L~l~~n~l~~~~~~-~~~~ 201 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKL-PKGFPTEKLKVLDFQNNAIHYLSK------EDMSSLQQATNLSLNLNGNDIAGIEPG-AFDS 201 (606)
T ss_dssp TCCEEECCSSCCCCCCC-CTTCCCTTCCEEECCSSCCCEECH------HHHHTTTTCCSEEEECTTCCCCEECTT-TTTT
T ss_pred cccEEECCCCcccccCc-ccccCCcccCEEEcccCcccccCh------hhhhhhcccceeEEecCCCccCccChh-Hhhh
Confidence 99999999999985322 244459999999999987763321 2345556677 777888776632222 221
Q ss_pred ------------------------------------------------cC--CCCcEEEccccccCCccCCCCCCCCccc
Q 046000 157 ------------------------------------------------NN--TKLEVLCLTNNSFTGNLQLPHSKHDFLH 186 (470)
Q Consensus 157 ------------------------------------------------~~--~~L~~L~l~~~~i~~~~~~~~~~~~~L~ 186 (470)
.+ .+++.+++++|.+.+.....+..+++|+
T Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 281 (606)
T 3t6q_A 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281 (606)
T ss_dssp CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCS
T ss_pred ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCC
Confidence 11 1678888899988887777899999999
Q ss_pred EEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccc-cCccccCCCcccEEecCC
Q 046000 187 HLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE-LSTLFTGCVSLWFLDRSH 265 (470)
Q Consensus 187 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~ 265 (470)
+|++++|.+. .+|..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+... ....+..+++|++|++++
T Consensus 282 ~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 282 ELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359 (606)
T ss_dssp EEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS
T ss_pred EEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCC
Confidence 9999999998 7887654 489999999999999977788899999999999999988744 445688999999999999
Q ss_pred CcCCCcc--hhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchh-HHhhhccccEEEcCCCccc
Q 046000 266 NNFHDQI--FPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHW-IANFSSYLEVLLMSKNFLK 342 (470)
Q Consensus 266 ~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~~~~~ 342 (470)
|.+.... ...+..+++|+.+++++|.+.+..+..+..+++|+.|++++|.+.+..+.. +..+.. ++.|++++|.+.
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~ 438 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL-LKVLNLSHSLLD 438 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT-CCEEECTTCCCB
T ss_pred CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc-CCEEECCCCccC
Confidence 9998765 567889999999999999998787888999999999999999998666554 455554 999999999999
Q ss_pred CCCchhhhccCCCeEEEccCccccCccc---c-ccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecch
Q 046000 343 GNIPMQLLNHGSLQLLSVSENCLSGFMT---S-SFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISD 418 (470)
Q Consensus 343 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~-~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 418 (470)
+..+..+..+++|++|++++|.+.+... . ...+++|++|++++|++.+..+..+..+++|+.|++++|++.+..++
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh
Confidence 8888889999999999999999876321 2 23789999999999999988889999999999999999999999999
Q ss_pred hhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCC
Q 046000 419 QINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPS 466 (470)
Q Consensus 419 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~ 466 (470)
.+..+++| +|++++|++++..|..+..+++|+.+++++|++++..+.
T Consensus 519 ~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 519 ALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred HhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 99999999 999999999998999999999999999999999976653
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.2e-48 Score=387.01 Aligned_cols=437 Identities=18% Similarity=0.111 Sum_probs=274.2
Q ss_pred CcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEec
Q 046000 12 KNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDL 86 (470)
Q Consensus 12 ~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 86 (470)
+++++|++++|.+.+... +++|++|++++|.+++..|.+|+++++|++|++++|.+.+..|++|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 567777777776654433 667777777777777666666777777777777777776666677777777777777
Q ss_pred cCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCC----c
Q 046000 87 SNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKL----E 162 (470)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L----~ 162 (470)
++|.+.+.. ...+.++++|++|++++|.+... .++..+..+++|++|++++|.+.+ ++...+..++++ .
T Consensus 112 ~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-----~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~ 184 (606)
T 3vq2_A 112 VETKLASLE-SFPIGQLITLKKLNVAHNFIHSC-----KLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNL 184 (606)
T ss_dssp TTSCCCCSS-SSCCTTCTTCCEEECCSSCCCCC-----CCCGGGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCC
T ss_pred cCCcccccc-ccccCCCCCCCEEeCCCCcccce-----echHhHhhcCCCCEEEccCCccee-cChhhhhhhhccccccc
Confidence 777766333 24466677777777776654421 123445666667777777776653 222222222222 2
Q ss_pred EEEccccccCCccCCCC---------------------------------------------------------------
Q 046000 163 VLCLTNNSFTGNLQLPH--------------------------------------------------------------- 179 (470)
Q Consensus 163 ~L~l~~~~i~~~~~~~~--------------------------------------------------------------- 179 (470)
++++++|.+.......+
T Consensus 185 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 264 (606)
T 3vq2_A 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264 (606)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence 45555555443322222
Q ss_pred -----------------CCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcccc
Q 046000 180 -----------------SKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242 (470)
Q Consensus 180 -----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 242 (470)
..+++|+.++++++.+. .+| .+..+++|++|++++|.+. .+| .+ .+++|+.|++++|
T Consensus 265 ~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n 338 (606)
T 3vq2_A 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMN 338 (606)
T ss_dssp EEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESC
T ss_pred heeccccccccccccccccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCC
Confidence 22334444444444443 333 1222445555555555552 344 23 5556666666655
Q ss_pred ccccccCccccCCCcccEEecCCCcCCCcc--hhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCc
Q 046000 243 NFSGELSTLFTGCVSLWFLDRSHNNFHDQI--FPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHI 320 (470)
Q Consensus 243 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 320 (470)
...... .+..+++|++|++++|.+.... ...+..+++|+.+++++|.+.+ .+..+..+++|+.|++++|.+.+..
T Consensus 339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVT 415 (606)
T ss_dssp SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTT
T ss_pred cCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCcc
Confidence 333222 3456677777777777665432 4556677777777777777663 3356667777777777777776555
Q ss_pred c-hhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC-ccccc-cccCcccEEEccCCcccccCccchh
Q 046000 321 P-HWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG-FMTSS-FSLSSLVHLYVQRNDLSGTIPNALF 397 (470)
Q Consensus 321 ~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~ 397 (470)
+ ..+..+.. ++.|++++|.+.+..|..+..+++|++|++++|.+.+ ..+.. ..+++|++|++++|++++..+..+.
T Consensus 416 ~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 416 EFSAFLSLEK-LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp TTTTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred Chhhhhcccc-CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc
Confidence 5 34444444 7788888877776677777777788888888887765 22333 3677888888888887777777777
Q ss_pred cCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCC-CCCeEEccCcccccccCC
Q 046000 398 RSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLR-RLGVMDLSHNRINGSIPS 466 (470)
Q Consensus 398 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~l~l~~n~~~~~~p~ 466 (470)
.+++|+.|++++|++.+..|..+..+++|++|++++|+++ .+|..+..++ +|+.|++++|+++...|.
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 7788888888888877777777777888888888888877 4666677776 588888888887765553
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.4e-47 Score=384.56 Aligned_cols=112 Identities=22% Similarity=0.188 Sum_probs=80.2
Q ss_pred cccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCc
Q 046000 5 GAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLA 79 (470)
Q Consensus 5 ~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~ 79 (470)
+.+++++++|++|++++|.+.+..+ +++|++|++++|.+++..+.+|+++++|++|++++|.+.+..+..|.+++
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT
T ss_pred HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccC
Confidence 3467788888888888887776644 67778888888877765555677788888888888877766667777777
Q ss_pred CCcEEeccCccCcCccChhhhccccccceecccCCCCc
Q 046000 80 SVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNN 117 (470)
Q Consensus 80 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 117 (470)
+|++|++++|.+.+..+ ..+.++++|++|++++|.+.
T Consensus 122 ~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 158 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKL-GTQVQLENLQELLLSNNKIQ 158 (680)
T ss_dssp TCCEEECCSSCCSCCCC-CSSSCCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcccccCc-hhhcccccCCEEEccCCccc
Confidence 78888887777764433 45566666777766666543
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.8e-47 Score=381.58 Aligned_cols=451 Identities=21% Similarity=0.200 Sum_probs=261.8
Q ss_pred cccccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhc
Q 046000 3 FLGAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVN 77 (470)
Q Consensus 3 ~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 77 (470)
.+|..+. +++++|++++|.+.+.+. +++|++|++++|.+++..|.+|+++++|++|++++|.+....+.+|..
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 4555443 689999999998876654 789999999999999888999999999999999999998666667999
Q ss_pred CcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhh-
Q 046000 78 LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQ- 156 (470)
Q Consensus 78 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~- 156 (470)
+++|++|++++|.+. ..+...+.++++|++|++++|.+.... ...+..+++|++|++++|.+.+ ++...+.
T Consensus 96 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~ 167 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTK------LGTQVQLENLQELLLSNNKIQA-LKSEELDI 167 (680)
T ss_dssp CTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCC------CCSSSCCTTCCEEECCSSCCCC-BCHHHHGG
T ss_pred CCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccC------chhhcccccCCEEEccCCcccc-cCHHHhhc
Confidence 999999999999987 444467889999999999998765322 2335566778888888887763 3333222
Q ss_pred -cCCCCcEEEccccccCCccCCCCCCC---------------------------CcccEEeccCCcccCCCCcchhhhhc
Q 046000 157 -NNTKLEVLCLTNNSFTGNLQLPHSKH---------------------------DFLHHLDVSSNNFTGKLPQDKGIILQ 208 (470)
Q Consensus 157 -~~~~L~~L~l~~~~i~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~ 208 (470)
.+++|+.|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..+. .++
T Consensus 168 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~ 246 (680)
T 1ziw_A 168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL-GLK 246 (680)
T ss_dssp GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG-GGG
T ss_pred cccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh-ccC
Confidence 34667777777776654443322221 2334444444444322222211 122
Q ss_pred --cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCc---------------------------------ccc
Q 046000 209 --KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELST---------------------------------LFT 253 (470)
Q Consensus 209 --~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------------------------------~~~ 253 (470)
+|++|++++|.+.+..+..|..+++|+.|++++|.+....+. .+.
T Consensus 247 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~ 326 (680)
T 1ziw_A 247 WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326 (680)
T ss_dssp GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcc
Confidence 244444444444433334444444444444444443332222 233
Q ss_pred CCCcccEEecCCCcCCCcchhhhcCcccccEEEcc----------------------------ccccccccchhhcCCCC
Q 046000 254 GCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD----------------------------NNKFSGKIEDGLLKSNQ 305 (470)
Q Consensus 254 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~----------------------------~~~~~~~~~~~~~~~~~ 305 (470)
.+++|++|++++|.+.......+..+++|++++++ +|++.+..+..+..+++
T Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 34444444444444444333334444444444433 33333333444555556
Q ss_pred ccEEECCCCcccCCcc-hhHHhhhccccEEEcCCCcccC--------------------------CCchhhhccCCCeEE
Q 046000 306 LKELDMSNNMLSGHIP-HWIANFSSYLEVLLMSKNFLKG--------------------------NIPMQLLNHGSLQLL 358 (470)
Q Consensus 306 L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~--------------------------~~~~~~~~~~~L~~L 358 (470)
|+.|++++|.+.+.++ ..+..+.. ++++++++|.+.+ ..|..+..+++|+.|
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLEN-IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTT-CCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCEEeCCCCcCccccCcccccCccc-ccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 6666666665544343 22222222 5555555554432 234445555555666
Q ss_pred EccCccccCcccccc-ccCcccEEEccCCcccccCc--------cchhcCCCccEEEcCCccceeecchhhhcCCCCcEE
Q 046000 359 SVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIP--------NALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVL 429 (470)
Q Consensus 359 ~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~--------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 429 (470)
++++|.+..+++..+ .+++|++|++++|.+.+... ..+..+++|+.|++++|++....++.|.++++|++|
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 666665555554443 45566666666665553321 124555666666666666664433456666666666
Q ss_pred EccCcccCcccchhhccCCCCCeEEccCcccccccC
Q 046000 430 LLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP 465 (470)
Q Consensus 430 ~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p 465 (470)
++++|+++...+..+..+++|+.|++++|++++..|
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH
T ss_pred ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh
Confidence 666666665555555666666666666666665444
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.1e-47 Score=378.34 Aligned_cols=420 Identities=20% Similarity=0.171 Sum_probs=347.5
Q ss_pred cccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCc
Q 046000 5 GAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLA 79 (470)
Q Consensus 5 ~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~ 79 (470)
+.+++++++|++|++++|.+.+..+ +++|++|++++|.+++..|.+|+++++|++|++++|.+.+..+..+++++
T Consensus 49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 128 (606)
T 3vq2_A 49 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI 128 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT
T ss_pred hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCC
Confidence 4578999999999999999876543 78999999999999988899999999999999999999877778899999
Q ss_pred CCcEEeccCccCcC-ccChhhhccccccceecccCCCCccccccccC---------------------CCCcccccCccc
Q 046000 80 SVEYLDLSNSYFEG-TFPISSLANHSKLKVLRLSSRNNNMLQLKTEN---------------------FLPTFQLKHDLK 137 (470)
Q Consensus 80 ~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---------------------~~~~~~~~~~L~ 137 (470)
+|++|++++|.+.+ ..| ..+.++++|++|++++|.+......... ..+......+|+
T Consensus 129 ~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLP-AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207 (606)
T ss_dssp TCCEEECCSSCCCCCCCC-GGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred CCCEEeCCCCcccceech-HhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceee
Confidence 99999999999875 334 6788999999999999877644322110 011111223677
Q ss_pred EEEccCccccC----------------------------------------------------------ccchHhhhcCC
Q 046000 138 YLDLSHNNLAG----------------------------------------------------------DFPAWILQNNT 159 (470)
Q Consensus 138 ~L~l~~~~i~~----------------------------------------------------------~~~~~~~~~~~ 159 (470)
+|++++|.+.+ .++. +..++
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~ 285 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLA 285 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGT
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCC
Confidence 77777765431 1111 34567
Q ss_pred CCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEc
Q 046000 160 KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239 (470)
Q Consensus 160 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 239 (470)
+|+.++++++.+.... .+..+++|++|++++|.+ +.+|.. .+++|++|++++|...... .+..+++|+.|++
T Consensus 286 ~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 357 (606)
T 3vq2_A 286 NVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDL 357 (606)
T ss_dssp TCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEEC
T ss_pred CCCEEEecCccchhhh--hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCccch--hhccCCCCCEEEC
Confidence 7888888888876533 778889999999999999 488843 5899999999999654333 5779999999999
Q ss_pred ccccccccc--CccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccc-hhhcCCCCccEEECCCCcc
Q 046000 240 SKNNFSGEL--STLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIE-DGLLKSNQLKELDMSNNML 316 (470)
Q Consensus 240 ~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 316 (470)
++|.+.... +..+..+++|++|++++|.+.... ..+..+++|+.+++++|.+.+..+ ..+..+++|+.|++++|.+
T Consensus 358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 436 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436 (606)
T ss_dssp CSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCC
T ss_pred cCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCC
Confidence 999987653 677889999999999999886643 678889999999999999987666 6788999999999999999
Q ss_pred cCCcchhHHhhhccccEEEcCCCcccC-CCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCcc
Q 046000 317 SGHIPHWIANFSSYLEVLLMSKNFLKG-NIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPN 394 (470)
Q Consensus 317 ~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~ 394 (470)
.+..+..+..+.. ++.|++++|.+.+ ..|..+..+++|+.|++++|.+++.++..+ .+++|++|++++|++.+..|.
T Consensus 437 ~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 437 KIDFDGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp EECCTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred CccchhhhcCCCC-CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 9778888877776 9999999999986 378889999999999999999998877665 789999999999999988899
Q ss_pred chhcCCCccEEEcCCccceeecchhhhcCC-CCcEEEccCcccCc
Q 046000 395 ALFRSSKLMTLDLRDNGFSGIISDQINESS-NLRVLLLRGNYLEG 438 (470)
Q Consensus 395 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~i~~ 438 (470)
.+..+++|+.|++++|+++ .+|..+..++ +|++|++++|++.+
T Consensus 516 ~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp GTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCC
T ss_pred HccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCccc
Confidence 9999999999999999999 4666688887 69999999999985
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-46 Score=373.01 Aligned_cols=445 Identities=21% Similarity=0.164 Sum_probs=357.2
Q ss_pred cccccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhc
Q 046000 3 FLGAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVN 77 (470)
Q Consensus 3 ~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 77 (470)
.+|..+ .+++++||+++|++++... +++|++|++++|.+++..+.+|+++++|++|++++|.+.+..|++|..
T Consensus 21 ~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 21 KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp SCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 345433 3579999999998875543 889999999999999877888999999999999999998777889999
Q ss_pred CcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhc
Q 046000 78 LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQN 157 (470)
Q Consensus 78 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 157 (470)
+++|++|++++|.+.+ .+...+.++++|++|++++|.+... .++..+..+++|++|++++|.+. .++...+..
T Consensus 99 l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~-----~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~ 171 (570)
T 2z63_A 99 LSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSF-----KLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRV 171 (570)
T ss_dssp CTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCC-----CCCGGGGGCTTCCEEECTTSCCC-EECGGGGHH
T ss_pred cccccccccccccccc-CCCccccccccccEEecCCCcccee-----cChhhhcccCCCCEEeCcCCccc-eecHHHccc
Confidence 9999999999999874 4434588999999999999876522 23456778899999999999988 454444556
Q ss_pred CCCC----cEEEccccccCCccCCCCCCCCcccEEeccCCc---------------------------------------
Q 046000 158 NTKL----EVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN--------------------------------------- 194 (470)
Q Consensus 158 ~~~L----~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~--------------------------------------- 194 (470)
+++| ..+++++|.+....+..+... +|++++++++.
T Consensus 172 l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 250 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTT
T ss_pred hhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhh
Confidence 6667 789999998886665555544 67888777652
Q ss_pred -------------------ccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCC
Q 046000 195 -------------------FTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGC 255 (470)
Q Consensus 195 -------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 255 (470)
+.+..+. .+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.+..... ..+
T Consensus 251 ~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~---~~l 324 (570)
T 2z63_A 251 LEGLCNLTIEEFRLAYLDYYLDDIID-LFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT---LKL 324 (570)
T ss_dssp TGGGGGSEEEEEEEEETTEEESCSTT-TTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB---CBC
T ss_pred hccccccchhhhhhhcchhhhhhchh-hhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc---ccc
Confidence 2222222 2334678888888888877 466667777 88888888888773332 367
Q ss_pred CcccEEecCCCcCCCcchhhhcCcccccEEEcccccccccc--chhhcCCCCccEEECCCCcccCCcchhHHhhhccccE
Q 046000 256 VSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKI--EDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEV 333 (470)
Q Consensus 256 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 333 (470)
++|+.|++++|.+...... ..+++|+.+++++|.+.+.. +..+..+++|+.|++++|.+.+ .+..+..+.. ++.
T Consensus 325 ~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~-L~~ 400 (570)
T 2z63_A 325 KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQ-LEH 400 (570)
T ss_dssp SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTT-CCE
T ss_pred cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCC-CCE
Confidence 8888899988877654333 67899999999999887543 5678889999999999999874 4444555555 999
Q ss_pred EEcCCCcccCCCc-hhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCccc-ccCccchhcCCCccEEEcCCc
Q 046000 334 LLMSKNFLKGNIP-MQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLS-GTIPNALFRSSKLMTLDLRDN 410 (470)
Q Consensus 334 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~n 410 (470)
|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+ .+++|++|++++|.+. +..|..+..+++|+.|++++|
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 9999999886655 467889999999999999887766655 7899999999999997 467888999999999999999
Q ss_pred cceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCC
Q 046000 411 GFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSC 467 (470)
Q Consensus 411 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~ 467 (470)
++.+..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|..
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999888999999999999999999999888888999999999999999999998864
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-46 Score=386.55 Aligned_cols=451 Identities=22% Similarity=0.219 Sum_probs=342.7
Q ss_pred CCCcCceeeccCCCCCCccc-----cccccccccccccCCCCc-hHhhhcCCCCcEEEccCCccccccchhhhcCcCCcE
Q 046000 10 KLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHL-LDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEY 83 (470)
Q Consensus 10 ~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 83 (470)
-.+++++|||++|.+++..+ +++|++|++++|...+.+ |.+|+++++|++|+|++|.+.+..|++|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 45789999999999876543 889999999999655454 788999999999999999999888999999999999
Q ss_pred EeccCccCcCccCh-hhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcC--CC
Q 046000 84 LDLSNSYFEGTFPI-SSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNN--TK 160 (470)
Q Consensus 84 L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~--~~ 160 (470)
|++++|.+.+..+. ..+..+++|++|++++|.+.... ....+..+++|++|++++|.+.+..+..+ ..+ ++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-----~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l-~~l~~~~ 175 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-----LHPSFGKLNSLKSIDFSSNQIFLVCEHEL-EPLQGKT 175 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-----CCGGGGTCSSCCEEEEESSCCCCCCSGGG-HHHHHCS
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-----cchhHhhCCCCCEEECCCCcCCeeCHHHc-ccccCCc
Confidence 99999999865552 34888999999999998775321 22457888999999999999885555433 344 78
Q ss_pred CcEEEccccccCCccCCCCCCCCc------ccEEeccCCcccCCCCcchhhh----------------------------
Q 046000 161 LEVLCLTNNSFTGNLQLPHSKHDF------LHHLDVSSNNFTGKLPQDKGII---------------------------- 206 (470)
Q Consensus 161 L~~L~l~~~~i~~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~~~~~~---------------------------- 206 (470)
|+.|++++|.+....+..+..+.+ |+.|++++|.+.+..+..+...
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 889999888887666655555444 8888888886654444332211
Q ss_pred ---------hccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhc
Q 046000 207 ---------LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYM 277 (470)
Q Consensus 207 ---------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 277 (470)
.++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..+.++++|++|++++|.+....+..+.
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence 25688888888888777777788888888888888888877777888888888888888888777677788
Q ss_pred CcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcch---------------hHHhhhccccEEEcCCCccc
Q 046000 278 NLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPH---------------WIANFSSYLEVLLMSKNFLK 342 (470)
Q Consensus 278 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------~~~~~~~~l~~L~l~~~~~~ 342 (470)
.+++|+.|++++|.+....+..+..+++|+.|++++|.+.+ ++. .+......++.+++++|.+.
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~ 414 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLE 414 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCC
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccCCCCcchhccCCCCcccccccccccceeecccCccc
Confidence 88888888888888876666677778888888888887762 221 00000112444455555544
Q ss_pred CC-CchhhhccCCCeEEEccCccccCcccccc--ccCcccEEEccCCcccc-----cCccchhcCCCccEEEcCCcccee
Q 046000 343 GN-IPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRNDLSG-----TIPNALFRSSKLMTLDLRDNGFSG 414 (470)
Q Consensus 343 ~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~l~~-----~~~~~l~~~~~L~~L~l~~n~l~~ 414 (470)
+. .+..+..+++|+.|++++|.+...+.... .+++|++|++++|.+.. ..+..+..+++|+.|++++|++++
T Consensus 415 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 494 (844)
T 3j0a_A 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494 (844)
T ss_dssp SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT
T ss_pred cCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccc
Confidence 22 12234578889999999998886654422 57889999999998863 334567788999999999999998
Q ss_pred ecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000 415 IISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT 469 (470)
Q Consensus 415 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~ 469 (470)
..+..+..+++|++|+|++|++++..+..+. ++|+.|++++|++++..|..|.
T Consensus 495 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~ 547 (844)
T 3j0a_A 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV 547 (844)
T ss_dssp CCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS
T ss_pred cChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC
Confidence 8888889999999999999999876666665 8899999999999988887764
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.5e-44 Score=356.46 Aligned_cols=437 Identities=19% Similarity=0.149 Sum_probs=294.2
Q ss_pred CcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEec
Q 046000 12 KNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDL 86 (470)
Q Consensus 12 ~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 86 (470)
++|++|++++|.+.+..+ +++|++|++++|.+++..|.+|+++++|++|++++|.+.+..+..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 567777777776654432 666777777777777666666777777777777777776666666777777777777
Q ss_pred cCccCcCccChhhhccccccceecccCCCC-ccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEE
Q 046000 87 SNSYFEGTFPISSLANHSKLKVLRLSSRNN-NMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLC 165 (470)
Q Consensus 87 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 165 (470)
++|.+.+......+.++++|++|++++|.. .... ...+..+++|++|++++|.+.+..+.. +..+++|+.|+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~ 178 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR------RIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLT 178 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC------TTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccC------HhhhhcccccCeeeccCCcccccChhh-hhccccCceEe
Confidence 777665322223566677777777766642 1111 123455566777777777766444433 34566677777
Q ss_pred ccccccCCccCCCCCCCCcccEEeccCCcccCCC--CcchhhhhccCceeeccCCccCCCCc----hhhcCCCCccEEEc
Q 046000 166 LTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKL--PQDKGIILQKLLYIDMANNRFEGNLP----SSIGDMKTLTFLHL 239 (470)
Q Consensus 166 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l 239 (470)
++++.+.......+..+++|++|++++|.+.+.. +......++.|++|+++++.+.+..+ ..+..+++++.+++
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 7666654332222334666777777777665321 22222335667777777766543222 22344566666666
Q ss_pred cccccccccC------cc-----------------------------ccCCCcccEEecCCCcCCCcchhhhcCcccccE
Q 046000 240 SKNNFSGELS------TL-----------------------------FTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWF 284 (470)
Q Consensus 240 ~~~~~~~~~~------~~-----------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 284 (470)
++|.+..... .. +...++|+.|++++|.+.......+..+++|+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCE
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccE
Confidence 6665432110 00 112346777777777776544444457888999
Q ss_pred EEccccccccccc---hhhcCCCCccEEECCCCcccCCcc--hhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEE
Q 046000 285 LYLDNNKFSGKIE---DGLLKSNQLKELDMSNNMLSGHIP--HWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS 359 (470)
Q Consensus 285 l~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 359 (470)
|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+ ..+..+.. ++.|++++|.++ .+|..+..+++|+.|+
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~-L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~ 416 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN-LTSLDISRNTFH-PMPDSCQWPEKMRFLN 416 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT-CCEEECTTCCCC-CCCSCCCCCTTCCEEE
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC-CCEEECCCCCCc-cCChhhcccccccEEE
Confidence 9999988876543 336678889999999998873221 23444444 899999999887 6777788888999999
Q ss_pred ccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcc
Q 046000 360 VSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGP 439 (470)
Q Consensus 360 l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~ 439 (470)
+++|.+..++... .++|++|++++|++++.. ..+++|+.|++++|+++ .+|. ...+++|++|++++|++++.
T Consensus 417 Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~ 488 (549)
T 2z81_A 417 LSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSV 488 (549)
T ss_dssp CTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCcccccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCc
Confidence 9999988766554 368999999999988542 47799999999999998 4555 46799999999999999988
Q ss_pred cchhhccCCCCCeEEccCcccccccC
Q 046000 440 ISNQFCQLRRLGVMDLSHNRINGSIP 465 (470)
Q Consensus 440 ~~~~~~~l~~L~~l~l~~n~~~~~~p 465 (470)
.+..+..+++|+.|++++|++++.+|
T Consensus 489 ~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 489 PDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CHHHHhcCcccCEEEecCCCccCCCc
Confidence 88899999999999999999998877
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3e-44 Score=356.12 Aligned_cols=438 Identities=20% Similarity=0.172 Sum_probs=361.3
Q ss_pred cCceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCcc
Q 046000 13 NLEALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSY 90 (470)
Q Consensus 13 ~L~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~ 90 (470)
..+.++.++..+...+. .+++++|++++|.+++..+.+|+++++|++|++++|.+.+..+++|.++++|++|++++|.
T Consensus 8 ~~~~~~c~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 8 PNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp TTTEEECCSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCcEEEeCCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 34678888877776665 6689999999999998888899999999999999999998888899999999999999999
Q ss_pred CcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccC-ccchHhhhcCCCCcEEEcccc
Q 046000 91 FEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAG-DFPAWILQNNTKLEVLCLTNN 169 (470)
Q Consensus 91 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~~L~~L~l~~~ 169 (470)
+.+ .+...+..+++|++|++++|.+..... ..+..+++|++|++++|.+.+ .+|.. +..+++|++|++++|
T Consensus 88 l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 88 IQS-LALGAFSGLSSLQKLVAVETNLASLEN------FPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSN 159 (570)
T ss_dssp CCE-ECTTTTTTCTTCCEEECTTSCCCCSTT------CSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTS
T ss_pred CCc-cCHhhhcCccccccccccccccccCCC------ccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCC
Confidence 984 444789999999999999998764321 136788999999999999885 35654 568999999999999
Q ss_pred ccCCccCCCCCCCCcc----cEEeccCCcccCCCCcchhhhhccCceeeccCC---------------------------
Q 046000 170 SFTGNLQLPHSKHDFL----HHLDVSSNNFTGKLPQDKGIILQKLLYIDMANN--------------------------- 218 (470)
Q Consensus 170 ~i~~~~~~~~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~--------------------------- 218 (470)
.+....+..+..+++| +.+++++|.+.+..+ ..+.. .+|+++++++|
T Consensus 160 ~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred ccceecHHHccchhccchhhhhcccCCCCceecCH-HHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 9987766777777777 899999999884433 33332 36777777665
Q ss_pred -------------------------------ccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCc
Q 046000 219 -------------------------------RFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNN 267 (470)
Q Consensus 219 -------------------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 267 (470)
.+.+..+..+..+++|+.|+++++.+. ..+..+..+ +|++|++++|.
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~ 315 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCK 315 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCB
T ss_pred cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCc
Confidence 222334566777889999999999887 455566667 99999999998
Q ss_pred CCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCc--chhHHhhhccccEEEcCCCcccCCC
Q 046000 268 FHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHI--PHWIANFSSYLEVLLMSKNFLKGNI 345 (470)
Q Consensus 268 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~~~~~~~~ 345 (470)
+..... ..+++|+.+++++|.+.+..+. ..+++|++|++++|.+.+.. +..+..+.. ++.|++++|.+.+..
T Consensus 316 ~~~l~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 316 FGQFPT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSFNGVITMS 389 (570)
T ss_dssp CSSCCB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSC-CCEEECCSCSEEEEE
T ss_pred ccccCc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCc-cCEEECCCCcccccc
Confidence 874332 4678999999999987754443 67899999999999987443 566666666 999999999988544
Q ss_pred chhhhccCCCeEEEccCccccCccc-ccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce-eecchhhhc
Q 046000 346 PMQLLNHGSLQLLSVSENCLSGFMT-SSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS-GIISDQINE 422 (470)
Q Consensus 346 ~~~~~~~~~L~~L~l~~~~l~~~~~-~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~ 422 (470)
+ .+..+++|+.|++++|.+...++ ..+ .+++|++|++++|.+.+..+..+..+++|+.|++++|++. +.+|..+..
T Consensus 390 ~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 390 S-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp E-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred c-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 4 48899999999999999987765 233 7899999999999999888889999999999999999997 568888999
Q ss_pred CCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000 423 SSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT 469 (470)
Q Consensus 423 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~ 469 (470)
+++|++|++++|++++..|..+..+++|+.|++++|++++..|+.|.
T Consensus 469 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 515 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515 (570)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhh
Confidence 99999999999999988899999999999999999999988777664
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.6e-44 Score=367.67 Aligned_cols=442 Identities=19% Similarity=0.163 Sum_probs=351.4
Q ss_pred ceeeccCCCCCCccc-cccccccccccccCCCCchHhhhcCCCCcEEEccCCccc-cccchhhhcCcCCcEEeccCccCc
Q 046000 15 EALDLSFNNINGTVE-SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLS-GSLPSVIVNLASVEYLDLSNSYFE 92 (470)
Q Consensus 15 ~~L~ls~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~ 92 (470)
+..|.+++.++..+. .+++++|+|++|.+++..+.+|+++++|++|++++|... .+.|.+|.++++|++|++++|.+.
T Consensus 7 ~~~dcs~~~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EEEEESCCCSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred eEEEccCCCCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 577888888887776 678999999999999888999999999999999999544 344889999999999999999998
Q ss_pred CccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccC
Q 046000 93 GTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT 172 (470)
Q Consensus 93 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~ 172 (470)
+..| ..+..+++|++|++++|.+...... ...+..+++|++|++++|.+.+..+...+..+++|+.|++++|.+.
T Consensus 87 ~~~p-~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 87 FLHP-DAFQGLFHLFELRLYFCGLSDAVLK----DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp EECT-TSSCSCSSCCCEECTTCCCSSCCST----TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred ccCH-hHccCCcccCEeeCcCCCCCccccc----CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 5544 7899999999999999977621111 1236778999999999999986555556789999999999999998
Q ss_pred CccCCCCCCC--CcccEEeccCCcccCCCCcchhhhhc------cCceeeccCCccCCCCchhhc---------------
Q 046000 173 GNLQLPHSKH--DFLHHLDVSSNNFTGKLPQDKGIILQ------KLLYIDMANNRFEGNLPSSIG--------------- 229 (470)
Q Consensus 173 ~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~l~--------------- 229 (470)
...+..+..+ ++|+.|++++|.+.+..+..+.. ++ .|+.|++++|.+.+..+..+.
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 7777777666 78999999999988766655332 22 499999999976544333222
Q ss_pred ---------------------C--CCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEE
Q 046000 230 ---------------------D--MKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLY 286 (470)
Q Consensus 230 ---------------------~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 286 (470)
+ .++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 1 26789999999998888888888999999999999999887778888999999999
Q ss_pred ccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCcccc
Q 046000 287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS 366 (470)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 366 (470)
+++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+++ ++ .+++|+.|++++|.+.
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK-LQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV 394 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC-CCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC-CCEEECCCCCCCc-cc----CCCCcchhccCCCCcc
Confidence 9999998777888889999999999999987555555555555 8999999988763 22 1455555555555554
Q ss_pred Cccc--------------------ccc--ccCcccEEEccCCcccccCcc-chhcCCCccEEEcCCccce-----eecch
Q 046000 367 GFMT--------------------SSF--SLSSLVHLYVQRNDLSGTIPN-ALFRSSKLMTLDLRDNGFS-----GIISD 418 (470)
Q Consensus 367 ~~~~--------------------~~~--~~~~L~~L~l~~~~l~~~~~~-~l~~~~~L~~L~l~~n~l~-----~~~~~ 418 (470)
.++. ..+ .+++|++|++++|++++..+. .+..+++|+.|++++|.+. +..+.
T Consensus 395 ~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~ 474 (844)
T 3j0a_A 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474 (844)
T ss_dssp CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence 4332 221 578888888888888755432 3556788999999999886 33445
Q ss_pred hhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCc
Q 046000 419 QINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCF 468 (470)
Q Consensus 419 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~ 468 (470)
.+.++++|++|+|++|++++..+..+..+++|+.|++++|++++..|..|
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 524 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524 (844)
T ss_dssp CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhh
Confidence 68889999999999999998888999999999999999999997666554
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-43 Score=344.99 Aligned_cols=431 Identities=22% Similarity=0.175 Sum_probs=305.0
Q ss_pred ceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCc
Q 046000 15 EALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFE 92 (470)
Q Consensus 15 ~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~ 92 (470)
++||+++|.++..+. .+++++|++++|.+++..+.+|+++++|++|++++|.+.+..|+.|..+++|++|++++|.++
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 467777777775544 467777888888777777777777888888888888777666777777888888888888776
Q ss_pred CccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCC--cEEEccccc
Q 046000 93 GTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKL--EVLCLTNNS 170 (470)
Q Consensus 93 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L--~~L~l~~~~ 170 (470)
.+|.. .+++|++|++++|.+... ..+..+..+++|++|++++|.+.+ ..+..+++| +.|++++|.
T Consensus 83 -~lp~~---~l~~L~~L~L~~N~l~~~-----~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 83 -KISCH---PTVNLKHLDLSFNAFDAL-----PICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp -EEECC---CCCCCSEEECCSSCCSSC-----CCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECT
T ss_pred -ecCcc---ccCCccEEeccCCccccc-----cchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeeccc
Confidence 44422 677788888877765421 123456667778888888777663 123456666 777777777
Q ss_pred c--CCccCCCCCCCC-cccEEeccCCcccCCCCcchhhhhc------------------------------cCceeeccC
Q 046000 171 F--TGNLQLPHSKHD-FLHHLDVSSNNFTGKLPQDKGIILQ------------------------------KLLYIDMAN 217 (470)
Q Consensus 171 i--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~------------------------------~L~~L~l~~ 217 (470)
+ ....+..+..+. ....++++++.+.+.++...+..++ +|+.|++++
T Consensus 150 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 150 TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEE
T ss_pred ccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccc
Confidence 6 444444443332 1223344444444444443333344 445555544
Q ss_pred CccCCCCchhh---cCCCCccEEEccccccccccCccc-----cCCCcccEEecCCCcCCCcchhhhcCc---ccccEEE
Q 046000 218 NRFEGNLPSSI---GDMKTLTFLHLSKNNFSGELSTLF-----TGCVSLWFLDRSHNNFHDQIFPKYMNL---TRLWFLY 286 (470)
Q Consensus 218 ~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~l~ 286 (470)
+.+.+.....+ ...++|+.|++++|.+.+..+..+ ..++.|+.+++++|.+ ......+..+ .+++.++
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEE
Confidence 44332111111 013467777777777765566555 6778888888888777 3222333333 5688888
Q ss_pred ccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccC--CCchhhhccCCCeEEEccCcc
Q 046000 287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG--NIPMQLLNHGSLQLLSVSENC 364 (470)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 364 (470)
+++|.+.... ....+++|++|++++|.+.+..+..+..+.. ++.|++++|.+.+ .+|..+..+++|+.|++++|.
T Consensus 309 l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 309 VSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSS-CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred cCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCC-CCEEEccCCccCccccchHHHhhCCCCCEEECCCCc
Confidence 8888876332 1257899999999999999778888877776 9999999999985 456778899999999999999
Q ss_pred ccC-cccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccch
Q 046000 365 LSG-FMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISN 442 (470)
Q Consensus 365 l~~-~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 442 (470)
+.+ ++...+ .+++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 988 666544 689999999999999877666554 79999999999999 6777777999999999999999954334
Q ss_pred hhccCCCCCeEEccCcccccccC
Q 046000 443 QFCQLRRLGVMDLSHNRINGSIP 465 (470)
Q Consensus 443 ~~~~l~~L~~l~l~~n~~~~~~p 465 (470)
.+..+++|+.|++++|++++..+
T Consensus 463 ~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 463 IFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp TTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhccCCcccEEECcCCCCcccCC
Confidence 58999999999999999997655
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-43 Score=351.93 Aligned_cols=416 Identities=17% Similarity=0.229 Sum_probs=266.7
Q ss_pred ccccccccccccCCCCchHhhhcCCCCcEEEccCCccc------c------ccchhhhcCcCCcEEecc-----------
Q 046000 31 QESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLS------G------SLPSVIVNLASVEYLDLS----------- 87 (470)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~------~------~~~~~~~~l~~L~~L~l~----------- 87 (470)
..++.|+|+++.+.+.+|.+++++++|++|+|++|.+. + .+|... +.+|+ ++++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 46889999999999999999999999999999999651 1 111111 11122 2222
Q ss_pred ----------------------------------CccCcCccChhhhccccccceecccCCCCcccccccc---------
Q 046000 88 ----------------------------------NSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTE--------- 124 (470)
Q Consensus 88 ----------------------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--------- 124 (470)
+|.+++ +| ..+.++++|++|++++|.+........
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VS-KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CC-HHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 345554 44 456777777777777776553100000
Q ss_pred --CCCCccc--ccCcccEEEccCccccCccchHhhhcCCCCcEEEccccc-cCC-ccCCCCCCC------CcccEEeccC
Q 046000 125 --NFLPTFQ--LKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS-FTG-NLQLPHSKH------DFLHHLDVSS 192 (470)
Q Consensus 125 --~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-i~~-~~~~~~~~~------~~L~~L~l~~ 192 (470)
.++..+. .+++|++|++++|.+.+.+|..+ .++++|+.|++++|. +++ ..+..+..+ ++|++|++++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 0444555 66777777777777766666443 467777777777776 554 344444433 6777777777
Q ss_pred CcccCCCCc-chhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCc-ccEEecCCCcCCC
Q 046000 193 NNFTGKLPQ-DKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVS-LWFLDRSHNNFHD 270 (470)
Q Consensus 193 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~ 270 (470)
|.+. .+|. ..+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.+. ..+..+..+++ |++|++++|.+.
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 7776 6665 123336677777777777765566 6667777777777777766 45555666666 777777777766
Q ss_pred cchhhhcCc--ccccEEEccccccccccchhhc-------CCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcc
Q 046000 271 QIFPKYMNL--TRLWFLYLDNNKFSGKIEDGLL-------KSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFL 341 (470)
Q Consensus 271 ~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 341 (470)
..+..+... ++|+.+++++|.+.+..+..+. .+++|+.|++++|.+. .+|..+....+.++.|++++|.+
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCC
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCC
Confidence 334444433 3677777777777665555555 5567777777777776 55655554333477777777777
Q ss_pred cCCCchhh-hcc-------CCCeEEEccCccccCcccccc--ccCcccEEEccCCcccccCccchhcCCCccEEEc----
Q 046000 342 KGNIPMQL-LNH-------GSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDL---- 407 (470)
Q Consensus 342 ~~~~~~~~-~~~-------~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l---- 407 (470)
+ .+|... ... ++|+.|++++|.++.++...+ .+++|++|++++|++.+ +|..+..+++|+.|++
T Consensus 470 ~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 470 T-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp S-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred C-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence 6 444332 222 267777777777776666655 67777777777777775 5666667777777777
Q ss_pred --CCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccccc
Q 046000 408 --RDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRING 462 (470)
Q Consensus 408 --~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~ 462 (470)
++|++.+.+|..+..+++|++|++++|+++ .+|..+. ++|+.|++++|+++.
T Consensus 548 ~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred ccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 345566667777777777777777777773 5565544 677777777777664
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.4e-43 Score=347.76 Aligned_cols=440 Identities=17% Similarity=0.191 Sum_probs=311.3
Q ss_pred cccccccCCCcCceeeccCCCCC------C-------ccc--cccccccccccccCCCCchHhhhcC-------------
Q 046000 3 FLGAGLHKLKNLEALDLSFNNIN------G-------TVE--SQESFELNLAKNNIGGHLLDCLNNM------------- 54 (470)
Q Consensus 3 ~l~~~l~~~~~L~~L~ls~~~~~------~-------~~~--~~~L~~L~l~~~~~~~~~~~~~~~~------------- 54 (470)
.+|++++++++|++|||++|.+. + .+. ...++ ++++++.+.+.++..++.+
T Consensus 96 ~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~ 174 (636)
T 4eco_A 96 RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174 (636)
T ss_dssp EECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCC
T ss_pred cCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccc
Confidence 57889999999999999999651 1 000 33444 5666555555555444311
Q ss_pred ------CCCcEEEcc--CCccccccchhhhcCcCCcEEeccCccCcCc-----------------cChhhhc--cccccc
Q 046000 55 ------TRLKVLDTS--FNQLSGSLPSVIVNLASVEYLDLSNSYFEGT-----------------FPISSLA--NHSKLK 107 (470)
Q Consensus 55 ------~~L~~L~l~--~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~~l~--~~~~L~ 107 (470)
..++.+.+. .|.+++ +|+.++++++|++|++++|.+++. +| ..+. ++++|+
T Consensus 175 ~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~ 252 (636)
T 4eco_A 175 IKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLT 252 (636)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCC
T ss_pred cccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCC
Confidence 111111121 455665 666777777777777777777653 44 3445 677777
Q ss_pred eecccCCCCccccccccCCCCcccccCcccEEEccCcc-ccC-ccchHhhh-----cCCCCcEEEccccccCCccCC--C
Q 046000 108 VLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNN-LAG-DFPAWILQ-----NNTKLEVLCLTNNSFTGNLQL--P 178 (470)
Q Consensus 108 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~-~~~~~~~~-----~~~~L~~L~l~~~~i~~~~~~--~ 178 (470)
+|++++|.+.. .++..+..+++|++|++++|. +++ .+|..+.. .+++|+.|++++|.++ ..+. .
T Consensus 253 ~L~L~~n~l~~------~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 253 DVEVYNCPNLT------KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp EEEEECCTTCS------SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred EEEecCCcCCc------cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 77777665431 233456666777888888777 665 56665432 2377888888888777 4455 6
Q ss_pred CCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCC-ccEEEccccccccccCccccCC--
Q 046000 179 HSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKT-LTFLHLSKNNFSGELSTLFTGC-- 255 (470)
Q Consensus 179 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~l-- 255 (470)
+..+++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.+. ..+..+...
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred hccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 7777888888888888777777 3344778888888888877 66777888888 888888888877 455555554
Q ss_pred CcccEEecCCCcCCCcchhhhc-------CcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhh
Q 046000 256 VSLWFLDRSHNNFHDQIFPKYM-------NLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS 328 (470)
Q Consensus 256 ~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 328 (470)
++|++|++++|.+....+..+. .+++|+.|++++|.+.......+..+++|+.|++++|.+. .+|.......
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~ 480 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE 480 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc
Confidence 3788888888888776666666 6778888999888888555555667888999999999888 6666554433
Q ss_pred c-------cccEEEcCCCcccCCCchhhh--ccCCCeEEEccCccccCccccccccCcccEEEc------cCCcccccCc
Q 046000 329 S-------YLEVLLMSKNFLKGNIPMQLL--NHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYV------QRNDLSGTIP 393 (470)
Q Consensus 329 ~-------~l~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l------~~~~l~~~~~ 393 (470)
. .++.|++++|.++ .+|..+. .+++|+.|++++|.+..++.....+++|++|++ ++|.+.+..|
T Consensus 481 ~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p 559 (636)
T 4eco_A 481 NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559 (636)
T ss_dssp TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCC
T ss_pred cccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccCh
Confidence 1 4899999999998 7777776 899999999999999987777778999999999 4677788899
Q ss_pred cchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCccc-----chhhcc---CCCCCeEEccCcccc
Q 046000 394 NALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPI-----SNQFCQ---LRRLGVMDLSHNRIN 461 (470)
Q Consensus 394 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~-----~~~~~~---l~~L~~l~l~~n~~~ 461 (470)
..+..+++|+.|++++|++. .+|..+. ++|++|++++|++.... |..... +...+..++.+|+..
T Consensus 560 ~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~~L 632 (636)
T 4eco_A 560 EGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632 (636)
T ss_dssp TTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCGGG
T ss_pred HHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCccccCCCccc
Confidence 99999999999999999995 6676654 89999999999887533 222222 233345566677543
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.2e-42 Score=347.59 Aligned_cols=423 Identities=18% Similarity=0.205 Sum_probs=283.4
Q ss_pred ccccccccccccCCCCchHhhhcCCCCcEEEc-cCCccccccchh-----------------------------------
Q 046000 31 QESFELNLAKNNIGGHLLDCLNNMTRLKVLDT-SFNQLSGSLPSV----------------------------------- 74 (470)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-~~~~i~~~~~~~----------------------------------- 74 (470)
..++.|+|+++.+.+.+|.+|+++++|++|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46889999999999999999999999999999 777654331100
Q ss_pred -----h-----------hcCcCCcEEecc--CccCcCccChhhhccccccceecccCCCCccccccc--c---------C
Q 046000 75 -----I-----------VNLASVEYLDLS--NSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKT--E---------N 125 (470)
Q Consensus 75 -----~-----------~~l~~L~~L~l~--~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~---------~ 125 (470)
+ .....++.+.+. +|.+++ +| ..+.++++|+.|++++|.+....... . .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS-KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hh-HHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0 001112222222 245554 55 45777777777777777665310000 0 1
Q ss_pred CCCccc--ccCcccEEEccCccccCccchHhhhcCCCCcEEEccccc-cCC-ccCC-------CCCCCCcccEEeccCCc
Q 046000 126 FLPTFQ--LKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS-FTG-NLQL-------PHSKHDFLHHLDVSSNN 194 (470)
Q Consensus 126 ~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-i~~-~~~~-------~~~~~~~L~~L~l~~~~ 194 (470)
++..+. .+++|++|++++|.+.+.+|.. +..+++|+.|++++|+ +++ ..+. .+..+++|++|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence 344444 6777888888887777677754 3477778888887776 554 2333 23344578888888887
Q ss_pred ccCCCCc-chhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCc-ccEEecCCCcCCCcc
Q 046000 195 FTGKLPQ-DKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVS-LWFLDRSHNNFHDQI 272 (470)
Q Consensus 195 ~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~ 272 (470)
+. .+|. ..+..+++|+.|++++|.+. .+| .|..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. .+
T Consensus 560 L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 560 LE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp CC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred CC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 77 6666 23334777888888888777 556 6777788888888888777 55556777777 888888888776 34
Q ss_pred hhhhcCcc--cccEEEccccccccccchh---hc--CCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCC
Q 046000 273 FPKYMNLT--RLWFLYLDNNKFSGKIEDG---LL--KSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNI 345 (470)
Q Consensus 273 ~~~~~~~~--~L~~l~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 345 (470)
+..+...+ +|+.|++++|.+.+..+.. +. ..++|+.|++++|.+. .+|..+....+.++.|++++|.+. .+
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-cc
Confidence 44444443 3788888887776543321 11 3347788888888877 666666544444888888888776 44
Q ss_pred chhhhc--------cCCCeEEEccCccccCcccccc--ccCcccEEEccCCcccccCccchhcCCCccEEEcCC------
Q 046000 346 PMQLLN--------HGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD------ 409 (470)
Q Consensus 346 ~~~~~~--------~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~------ 409 (470)
|..+.. +++|+.|++++|.+..++...+ .+++|+.|++++|.+.+ +|..+..+++|+.|++++
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTC
T ss_pred ChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccc
Confidence 443322 2378888888888887776665 67888888888888875 566777788888888865
Q ss_pred ccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCC
Q 046000 410 NGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSC 467 (470)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~ 467 (470)
|.+.+.+|..+..+++|++|+|++|++ +.+|..+. ++|+.|++++|+++..-|..
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGG
T ss_pred ccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHH
Confidence 666667777788888888888888888 46676654 58888888888877555443
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.7e-42 Score=336.64 Aligned_cols=420 Identities=18% Similarity=0.181 Sum_probs=332.7
Q ss_pred cccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccc-cchhhhcC
Q 046000 5 GAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGS-LPSVIVNL 78 (470)
Q Consensus 5 ~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l 78 (470)
|.+++++++|++|++++|++.+..+ +++|++|++++|.+++..+.+|+++++|++|++++|.+.+. .|..+..+
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 5779999999999999999976653 88999999999999998888899999999999999999853 56789999
Q ss_pred cCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcC
Q 046000 79 ASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNN 158 (470)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 158 (470)
++|++|++++|.+.+..+...+..+++|++|++++|.+... .+..+..+++|++|+++++.+. .++..++..+
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l 195 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY------QSQSLKSIRDIHHLTLHLSESA-FLLEIFADIL 195 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE------CTTTTTTCSEEEEEEEECSBST-THHHHHHHST
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc------ChhhhhccccCceEecccCccc-ccchhhHhhc
Confidence 99999999999866677767899999999999999877632 2345677789999999999887 7787777789
Q ss_pred CCCcEEEccccccCCccC---CCCCCCCcccEEeccCCcccCCCCcchh---hhhccCceeeccCCccCCC---------
Q 046000 159 TKLEVLCLTNNSFTGNLQ---LPHSKHDFLHHLDVSSNNFTGKLPQDKG---IILQKLLYIDMANNRFEGN--------- 223 (470)
Q Consensus 159 ~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~--------- 223 (470)
++|+.|++++|.+.+... .....+++|+.|+++++.+.+..+..+. ..++.|+.+++++|.+.+.
T Consensus 196 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 275 (549)
T 2z81_A 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275 (549)
T ss_dssp TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTT
T ss_pred ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchh
Confidence 999999999999886421 2223466777888777766532222111 1234555555555543321
Q ss_pred --------------------------CchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchh---
Q 046000 224 --------------------------LPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFP--- 274 (470)
Q Consensus 224 --------------------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--- 274 (470)
.+..+...++|+.|++++|.+.......+..+++|++|++++|.+.+..+.
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchh
Confidence 111123346788888888887744444446799999999999999875533
Q ss_pred hhcCcccccEEEccccccccccc--hhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhcc
Q 046000 275 KYMNLTRLWFLYLDNNKFSGKIE--DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNH 352 (470)
Q Consensus 275 ~~~~~~~L~~l~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~ 352 (470)
.++.+++|+.|++++|.+.+... ..+..+++|++|++++|.+. .+|..+..... +++|++++|.+. .++..+ .
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~-L~~L~Ls~N~l~-~l~~~~--~ 430 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK-MRFLNLSSTGIR-VVKTCI--P 430 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTT-CCEEECTTSCCS-CCCTTS--C
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccc-ccEEECCCCCcc-cccchh--c
Confidence 36788999999999999986543 45788999999999999998 77776666555 999999999987 444443 3
Q ss_pred CCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEcc
Q 046000 353 GSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLR 432 (470)
Q Consensus 353 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 432 (470)
++|++|++++|.+++.+ ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..++.+..+++|++|+++
T Consensus 431 ~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 431 QTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred CCceEEECCCCChhhhc---ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence 68999999999998765 35899999999999998 4554 4578999999999999998888889999999999999
Q ss_pred CcccCcccc
Q 046000 433 GNYLEGPIS 441 (470)
Q Consensus 433 ~n~i~~~~~ 441 (470)
+|++.+..+
T Consensus 506 ~N~~~~~~~ 514 (549)
T 2z81_A 506 TNPWDCSCP 514 (549)
T ss_dssp SSCBCCCHH
T ss_pred CCCccCCCc
Confidence 999987555
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=332.52 Aligned_cols=417 Identities=18% Similarity=0.174 Sum_probs=323.2
Q ss_pred CcccccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhh
Q 046000 2 LFLGAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIV 76 (470)
Q Consensus 2 ~~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 76 (470)
..+|..+. ++|++|++++|.+.+..+ +++|++|++++|.+++..|.+|+++++|++|++++|.++ .+|..
T Consensus 13 ~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-- 87 (520)
T 2z7x_B 13 IHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH-- 87 (520)
T ss_dssp SSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--
T ss_pred cccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--
Confidence 34666555 899999999999987754 899999999999999888999999999999999999998 56655
Q ss_pred cCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcc--cEEEccCccc--cCccch
Q 046000 77 NLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDL--KYLDLSHNNL--AGDFPA 152 (470)
Q Consensus 77 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~i--~~~~~~ 152 (470)
.+++|++|++++|.+.+......+.++++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|.
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~ 158 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---------SSVLPIAHLNISKVLLVLGETYGEKEDPE 158 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---------GGGGGGTTSCEEEEEEEECTTTTSSCCTT
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---------hhccccccceeeEEEeecccccccccccc
Confidence 899999999999999853222689999999999999988763 124455666 9999999988 544444
Q ss_pred Hhh-------------------------hcCCCCcEEEccccc-------cCCccCCCCCCCCcccEEeccCCcccCCCC
Q 046000 153 WIL-------------------------QNNTKLEVLCLTNNS-------FTGNLQLPHSKHDFLHHLDVSSNNFTGKLP 200 (470)
Q Consensus 153 ~~~-------------------------~~~~~L~~L~l~~~~-------i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 200 (470)
.+. ..+++|+.+++++|. +.+..+ .+..+++|+.|+++++.+.+..+
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~ 237 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSF 237 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHH
Confidence 322 224455555555543 221111 34556666777776665543222
Q ss_pred cchhh--hhccCceeeccCCccCCCCchhh-----cCCCCccEEEccccccccccCccccCC---CcccEEecCCCcCCC
Q 046000 201 QDKGI--ILQKLLYIDMANNRFEGNLPSSI-----GDMKTLTFLHLSKNNFSGELSTLFTGC---VSLWFLDRSHNNFHD 270 (470)
Q Consensus 201 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~ 270 (470)
..... ..++|++|++++|.+.+.+|..+ ..++.|+.++++++.+ ......+..+ .+|+.|++++|.+..
T Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccc
Confidence 21111 13589999999999987888887 8999999999999988 3332333333 579999999998865
Q ss_pred cchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccC--CcchhHHhhhccccEEEcCCCcccCCCchh
Q 046000 271 QIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSG--HIPHWIANFSSYLEVLLMSKNFLKGNIPMQ 348 (470)
Q Consensus 271 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~ 348 (470)
... +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+.. ++.|++++|.+.+.+|..
T Consensus 317 ~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~-L~~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 317 MLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS-LQQLDISQNSVSYDEKKG 393 (520)
T ss_dssp CCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT-CCEEECCSSCCBCCGGGC
T ss_pred ccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC-CCEEECCCCcCCcccccc
Confidence 432 2578999999999999998778888999999999999999984 44566666666 999999999998756654
Q ss_pred -hhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCc
Q 046000 349 -LLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLR 427 (470)
Q Consensus 349 -~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 427 (470)
+..+++|+.|++++|.+++..+..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++...+..+..+++|+
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hhccCccCCEEECcCCCCCcchhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence 77889999999999998755443322 79999999999999 6777777999999999999999954444488999999
Q ss_pred EEEccCcccCcc
Q 046000 428 VLLLRGNYLEGP 439 (470)
Q Consensus 428 ~L~l~~n~i~~~ 439 (470)
+|++++|++.+.
T Consensus 472 ~L~l~~N~~~c~ 483 (520)
T 2z7x_B 472 KIWLHTNPWDCS 483 (520)
T ss_dssp EEECCSSCBCCC
T ss_pred EEECcCCCCccc
Confidence 999999999863
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.1e-41 Score=337.83 Aligned_cols=399 Identities=18% Similarity=0.173 Sum_probs=325.2
Q ss_pred CCCcEEEccCCccccccchhhhcCcCCcEEec-cCccCcCccChhhhc--------------------------------
Q 046000 55 TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDL-SNSYFEGTFPISSLA-------------------------------- 101 (470)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~~l~-------------------------------- 101 (470)
.+++.|+|+++.+.+.+|..++++++|++|+| ++|.+.|..+.....
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 888765442211000
Q ss_pred ------------------cccccceecccC--CCCccccccccCCCCcccccCcccEEEccCccccC-------------
Q 046000 102 ------------------NHSKLKVLRLSS--RNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAG------------- 148 (470)
Q Consensus 102 ------------------~~~~L~~L~l~~--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~------------- 148 (470)
....++.+.+.. |.+. .++..+..+++|++|++++|.+++
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~-------~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n 475 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT-------FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEE-------EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCccc-------chhHHHhcCCCCCEEECcCCcCCCCcccccccccccc
Confidence 001112222221 1111 245678899999999999999996
Q ss_pred ----ccchHh-hhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCc-ccC-CCCcchhh------hhccCceeec
Q 046000 149 ----DFPAWI-LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNN-FTG-KLPQDKGI------ILQKLLYIDM 215 (470)
Q Consensus 149 ----~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~------~~~~L~~L~l 215 (470)
.+|..+ +..+++|+.|++++|.+.+..+..+..+++|+.|++++|. +.+ .+|..+.. .+++|++|++
T Consensus 476 ~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L 555 (876)
T 4ecn_A 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM 555 (876)
T ss_dssp HHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred cccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence 277765 4589999999999999888888889999999999999998 776 67765544 1349999999
Q ss_pred cCCccCCCCch--hhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCccc-ccEEEcccccc
Q 046000 216 ANNRFEGNLPS--SIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTR-LWFLYLDNNKF 292 (470)
Q Consensus 216 ~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~ 292 (470)
++|.+. .+|. .+..+++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. .++..+..+++ |+.|++++|.+
T Consensus 556 s~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 556 GYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC
T ss_pred eCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC
Confidence 999999 7887 8999999999999999998 555 8899999999999999998 56667888998 99999999999
Q ss_pred ccccchhhcCCC--CccEEECCCCcccCCcchhH---Hhh-hccccEEEcCCCcccCCCchhh-hccCCCeEEEccCccc
Q 046000 293 SGKIEDGLLKSN--QLKELDMSNNMLSGHIPHWI---ANF-SSYLEVLLMSKNFLKGNIPMQL-LNHGSLQLLSVSENCL 365 (470)
Q Consensus 293 ~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~---~~~-~~~l~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l 365 (470)
. ..+..+...+ +|+.|++++|.+.+.+|... ..+ ..+++.|++++|.+. .+|..+ ..+++|+.|++++|.+
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 8 5566666554 49999999999987655322 111 124999999999998 566554 5889999999999999
Q ss_pred cCcccccccc--------CcccEEEccCCcccccCccchh--cCCCccEEEcCCccceeecchhhhcCCCCcEEEccC--
Q 046000 366 SGFMTSSFSL--------SSLVHLYVQRNDLSGTIPNALF--RSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRG-- 433 (470)
Q Consensus 366 ~~~~~~~~~~--------~~L~~L~l~~~~l~~~~~~~l~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-- 433 (470)
..++...+.. ++|++|++++|++. .+|..+. .+++|+.|++++|++.+ +|..+..+++|+.|+|++
T Consensus 710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred CccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 9888777632 39999999999999 6677776 89999999999999996 788899999999999976
Q ss_pred ----cccCcccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000 434 ----NYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT 469 (470)
Q Consensus 434 ----n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~ 469 (470)
|.+.+.+|..+..+++|+.|++++|++ +.+|..+.
T Consensus 788 ~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 788 DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 778889999999999999999999999 69998753
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.3e-40 Score=325.42 Aligned_cols=436 Identities=19% Similarity=0.207 Sum_probs=322.6
Q ss_pred CCCcCceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEecc
Q 046000 10 KLKNLEALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLS 87 (470)
Q Consensus 10 ~~~~L~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 87 (470)
.+...+++|++++.++..+. .+++++|++++|.+++..+.+|+++++|++|++++|.+++..|++|..+++|++|+++
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccCCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 35566899999999987665 6899999999999998888999999999999999999998889999999999999999
Q ss_pred CccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCC--cEEE
Q 046000 88 NSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKL--EVLC 165 (470)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L--~~L~ 165 (470)
+|.++ .+|.. .+++|++|++++|.+.... .+..+..+++|++|++++|.+.+. .+..++++ +.|+
T Consensus 109 ~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~-----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~ 175 (562)
T 3a79_B 109 HNRLQ-NISCC---PMASLRHLDLSFNDFDVLP-----VCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCIL 175 (562)
T ss_dssp TSCCC-EECSC---CCTTCSEEECCSSCCSBCC-----CCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEE
T ss_pred CCcCC-ccCcc---ccccCCEEECCCCCccccC-----chHhhcccCcccEEecCCCccccC----chhhhhhceeeEEE
Confidence 99998 56633 8999999999999876322 234678889999999999998742 23345556 9999
Q ss_pred cccccc--CCccCCCCCCCC-cccEEeccCCcccCCCCcchhhhhccCceeeccCCccC----CCCchhhcCC-------
Q 046000 166 LTNNSF--TGNLQLPHSKHD-FLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFE----GNLPSSIGDM------- 231 (470)
Q Consensus 166 l~~~~i--~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~l------- 231 (470)
+++|.+ ....+..+..+. ....+++++|.+.+..+...+..+++|+.+++++|... ......+..+
T Consensus 176 L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVT 255 (562)
T ss_dssp EEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEE
T ss_pred eecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEE
Confidence 999988 554454444433 11244666666665555555555667777777665310 0011122333
Q ss_pred --------------------CCccEEEccccccccccCccc-----cCCCcccEEecCCCcCCCcchhhhc---Cccccc
Q 046000 232 --------------------KTLTFLHLSKNNFSGELSTLF-----TGCVSLWFLDRSHNNFHDQIFPKYM---NLTRLW 283 (470)
Q Consensus 232 --------------------~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~L~ 283 (470)
++|+.|++++|.+.+..+..+ ..+..|+.+++..+.+ ......+. ...+++
T Consensus 256 L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~ 334 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIK 334 (562)
T ss_dssp EEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCS
T ss_pred ecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcce
Confidence 356666666666654444433 4444444444444443 11111111 125688
Q ss_pred EEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC--CchhhhccCCCeEEEcc
Q 046000 284 FLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN--IPMQLLNHGSLQLLSVS 361 (470)
Q Consensus 284 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~ 361 (470)
.+++++|.+.... ....+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+++. .|..+..+++|+.|+++
T Consensus 335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR-LQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSS-CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCC-CCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 8888888775322 1257899999999999999778887777776 99999999998852 34668889999999999
Q ss_pred CccccC-cccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcc
Q 046000 362 ENCLSG-FMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGP 439 (470)
Q Consensus 362 ~~~l~~-~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~ 439 (470)
+|.+.. ++...+ .+++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++.
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~- 487 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS- 487 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-
Confidence 999987 666555 789999999999999866665543 79999999999998 567667799999999999999995
Q ss_pred cchh-hccCCCCCeEEccCcccccccCC
Q 046000 440 ISNQ-FCQLRRLGVMDLSHNRINGSIPS 466 (470)
Q Consensus 440 ~~~~-~~~l~~L~~l~l~~n~~~~~~p~ 466 (470)
+|.. +..+++|+.|++++|++++..|.
T Consensus 488 l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 488 VPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 5554 99999999999999999976653
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.1e-39 Score=323.66 Aligned_cols=441 Identities=19% Similarity=0.144 Sum_probs=275.8
Q ss_pred cCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEecc
Q 046000 13 NLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLS 87 (470)
Q Consensus 13 ~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 87 (470)
++++|||++|+|+..++ +++|++|+|++|.+++..+.+|+++++|++|+|++|+++...+.+|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 67777777777765443 6777777777777776666677777777777777777775556667777777777777
Q ss_pred CccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCC----CcE
Q 046000 88 NSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTK----LEV 163 (470)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~----L~~ 163 (470)
+|.++ ..+...+.++++|++|++++|.+.... ....+..+++|++|++++|.+++ ++...+..+.+ ...
T Consensus 133 ~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~-----~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 133 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCCE
T ss_pred CCcCC-CCChhhhhcCcccCeeccccCccccCC-----CchhhccchhhhhhcccCccccc-cccccccchhhhhhhhhh
Confidence 77776 334355677777777777777654221 22344556677777777777763 33222222222 335
Q ss_pred EEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcch----------------------------------------
Q 046000 164 LCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDK---------------------------------------- 203 (470)
Q Consensus 164 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---------------------------------------- 203 (470)
++++.+.+.......+ ....++.+.+.++......+...
T Consensus 206 ~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 206 LDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 5666665543222222 22233444443332110000000
Q ss_pred -----------------hhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCc----------------
Q 046000 204 -----------------GIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELST---------------- 250 (470)
Q Consensus 204 -----------------~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---------------- 250 (470)
+.....++.+.+.++.+... ..+.....++.|++.++.+......
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~ 362 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 362 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCC
Confidence 11112233333333322211 1233445566666666544322211
Q ss_pred ---cccCCCcccEEecCCCcCCCc--chhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHH
Q 046000 251 ---LFTGCVSLWFLDRSHNNFHDQ--IFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIA 325 (470)
Q Consensus 251 ---~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 325 (470)
....+++|++++++.|.+... ....+....+++.+++..+.... ....+..+++|+.+++..+......+....
T Consensus 363 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 363 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred CCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccc
Confidence 112355666666666655331 22334455666666666665542 334456677788888877765544443333
Q ss_pred hhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCcccc-Ccccccc-ccCcccEEEccCCcccccCccchhcCCCcc
Q 046000 326 NFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS-GFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLM 403 (470)
Q Consensus 326 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 403 (470)
.....++.++++.|.+....+..+..++.++.|++++|.+. ...+..+ .+++|++|++++|++.+..|..+.++++|+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 33334888888888888777777888889999999888643 3344444 688899999999999888888888899999
Q ss_pred EEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccC-CCCCeEEccCccccccc
Q 046000 404 TLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQL-RRLGVMDLSHNRINGSI 464 (470)
Q Consensus 404 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l-~~L~~l~l~~n~~~~~~ 464 (470)
+|+|++|++++..+..+.++++|++|++++|++++..|..+..+ ++|+.|++++|+++...
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999988778888889999999999999988888888887 58999999999887643
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.9e-39 Score=308.95 Aligned_cols=368 Identities=20% Similarity=0.206 Sum_probs=225.3
Q ss_pred CCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccC
Q 046000 55 TRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKH 134 (470)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 134 (470)
++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+...+..+++|++|++++|.+... .+..+..++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL------ETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE------CTTTTTTCT
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc------ChhhccCcc
Confidence 55666666666666555666666666666666666655444444455555555555555443311 122344556
Q ss_pred cccEEEccCccccCccch-HhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCcee
Q 046000 135 DLKYLDLSHNNLAGDFPA-WILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI 213 (470)
Q Consensus 135 ~L~~L~l~~~~i~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 213 (470)
+|++|++++|.+.+.++. ..+..+++|++|++++|.+... .|...+..+++|++|
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~------------------------~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI------------------------QPASFFLNMRRFHVL 159 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSC------------------------CCCGGGGGCTTCCEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCcc------------------------CcccccCCCCcccEE
Confidence 667777777766532222 1233445555555555554433 333323334444444
Q ss_pred eccCCccCCCCchhhcCC--CCccEEEccccccccccCcc--------ccCCCcccEEecCCCcCCCcchhhhcC---cc
Q 046000 214 DMANNRFEGNLPSSIGDM--KTLTFLHLSKNNFSGELSTL--------FTGCVSLWFLDRSHNNFHDQIFPKYMN---LT 280 (470)
Q Consensus 214 ~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~~~---~~ 280 (470)
++++|.+.+..+..+..+ ..++.++++++.+....+.. +..+++|++|++++|.+....+..+.. .+
T Consensus 160 ~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 160 DLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239 (455)
T ss_dssp ECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTC
T ss_pred eCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccc
Confidence 444444443333333332 34555555555444332221 223456666666666665544444432 25
Q ss_pred cccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhh-hccccEEEcCCCcccCCCchhhhccCCCeEEE
Q 046000 281 RLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANF-SSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS 359 (470)
Q Consensus 281 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 359 (470)
+++.++++++...+.... .+.+.+.....+... ...++.+++++|.+.+..+..+..+++|+.|+
T Consensus 240 ~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 305 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305 (455)
T ss_dssp CEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEE
Confidence 666666666544321110 001110111111111 12377888888888777777888888899999
Q ss_pred ccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 360 VSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 360 l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
+++|.+.+.++..+ .+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|++++
T Consensus 306 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 385 (455)
T 3v47_A 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385 (455)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc
Confidence 99998888766555 78899999999999887778888888999999999999988778888889999999999999987
Q ss_pred ccchhhccCCCCCeEEccCcccccccCC
Q 046000 439 PISNQFCQLRRLGVMDLSHNRINGSIPS 466 (470)
Q Consensus 439 ~~~~~~~~l~~L~~l~l~~n~~~~~~p~ 466 (470)
..+..+..+++|+.|++++|++++.+|.
T Consensus 386 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCHhHhccCCcccEEEccCCCcccCCCc
Confidence 7777788889999999999999988874
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-37 Score=313.08 Aligned_cols=453 Identities=20% Similarity=0.122 Sum_probs=314.6
Q ss_pred ccccccCCCc---CceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcC
Q 046000 4 LGAGLHKLKN---LEALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNL 78 (470)
Q Consensus 4 l~~~l~~~~~---L~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l 78 (470)
+|+....|.. -+..+.++-.++.++. .+++++|+|++|.+++..+.+|+++++|++|+|++|.|+.+.+.+|.++
T Consensus 20 ~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L 99 (635)
T 4g8a_A 20 IPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL 99 (635)
T ss_dssp -----CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCC
Confidence 4444444432 3456777777877766 4689999999999998888899999999999999999998888899999
Q ss_pred cCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcC
Q 046000 79 ASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNN 158 (470)
Q Consensus 79 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 158 (470)
++|++|+|++|++. ..+...+.++++|++|++++|.+.... ...+..+++|++|++++|.+.....+..+..+
T Consensus 100 ~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~------~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l 172 (635)
T 4g8a_A 100 SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLE------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 172 (635)
T ss_dssp TTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCST------TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred CCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCC------hhhhhcCcccCeeccccCccccCCCchhhccc
Confidence 99999999999998 566678999999999999999876332 12467789999999999998743334456689
Q ss_pred CCCcEEEccccccCCccCCCCCCCCc----ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCC-CCchhhcCCCC
Q 046000 159 TKLEVLCLTNNSFTGNLQLPHSKHDF----LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEG-NLPSSIGDMKT 233 (470)
Q Consensus 159 ~~L~~L~l~~~~i~~~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~ 233 (470)
++|+.|++++|.+....+..+..+.+ ...++++.+.+. .++...+. ...++.+++.++.... ..+..+..+..
T Consensus 173 ~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~ 250 (635)
T 4g8a_A 173 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAG 250 (635)
T ss_dssp TTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTT
T ss_pred hhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhhcccccccccchhhcCCcc
Confidence 99999999999998766666554433 346778888776 34443333 2344555555543220 11112222332
Q ss_pred cc---------------------------------------------------------EEEccccccccccCccccCCC
Q 046000 234 LT---------------------------------------------------------FLHLSKNNFSGELSTLFTGCV 256 (470)
Q Consensus 234 L~---------------------------------------------------------~L~l~~~~~~~~~~~~~~~l~ 256 (470)
++ .+.+.++.+... ..+....
T Consensus 251 l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~ 328 (635)
T 4g8a_A 251 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNF 328 (635)
T ss_dssp CEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCC
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccch
Confidence 22 222222222111 1123344
Q ss_pred cccEEecCCCcCCCcchh-------------------hhcCcccccEEEcccccccc--ccchhhcCCCCccEEECCCCc
Q 046000 257 SLWFLDRSHNNFHDQIFP-------------------KYMNLTRLWFLYLDNNKFSG--KIEDGLLKSNQLKELDMSNNM 315 (470)
Q Consensus 257 ~L~~L~l~~~~~~~~~~~-------------------~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~ 315 (470)
.++.|++.++.+...... ....+++|+.+++++|.+.. ..+.......+++.+++..+.
T Consensus 329 ~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~ 408 (635)
T 4g8a_A 329 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG 408 (635)
T ss_dssp CCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS
T ss_pred hhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccc
Confidence 555666555544322111 11234455555555554431 122333445555555555554
Q ss_pred ccCCcchhHHhhhccccEEEcCCCcccCCC-chhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCccc-ccC
Q 046000 316 LSGHIPHWIANFSSYLEVLLMSKNFLKGNI-PMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLS-GTI 392 (470)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~-~~~ 392 (470)
.. ..+..+..... ++.+++..+...... ...+..++.++.+++++|.+.......+ .++.+++|++++|... ...
T Consensus 409 ~~-~~~~~~~~l~~-L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~ 486 (635)
T 4g8a_A 409 VI-TMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 486 (635)
T ss_dssp EE-EECSCCTTCTT-CCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred cc-ccccccccccc-ccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccC
Confidence 43 22233333333 677777766654333 3456778889999999998887776666 6899999999999854 456
Q ss_pred ccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000 393 PNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT 469 (470)
Q Consensus 393 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~ 469 (470)
|..+..+++|+.|++++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|++++..|+.|.
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 563 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 563 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT
T ss_pred chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH
Confidence 78899999999999999999999999999999999999999999998899999999999999999999999998774
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.2e-38 Score=301.35 Aligned_cols=388 Identities=18% Similarity=0.146 Sum_probs=267.6
Q ss_pred cCceeeccCCCCCCccc-cccccccccccccCCCCchHhhhcCCCCcEEEccCCcccc-ccchhhhcCcCCcEEeccCcc
Q 046000 13 NLEALDLSFNNINGTVE-SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSG-SLPSVIVNLASVEYLDLSNSY 90 (470)
Q Consensus 13 ~L~~L~ls~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~ 90 (470)
.-+.++.+++.+...+. .+++++|++++|.+++..|.+|+++++|++|++++|.+.. ..+..|..+++|++|++++|.
T Consensus 11 ~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 11 IGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp ETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred EccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 34568888888876666 5789999999999998889999999999999999998863 446789999999999999999
Q ss_pred CcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccc
Q 046000 91 FEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS 170 (470)
Q Consensus 91 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~ 170 (470)
+.+..+ ..+.++++|++|++++|.+...... ...+..+++|++|++++|.+.+..+..++..+++|+.|++++|.
T Consensus 91 l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 91 FLQLET-GAFNGLANLEVLTLTQCNLDGAVLS----GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp TCEECT-TTTTTCTTCCEEECTTSCCBTHHHH----SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred cCccCh-hhccCcccCCEEeCCCCCCCccccC----cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 985444 6789999999999999987531111 12366778999999999999966677767889999999999999
Q ss_pred cCCccCCCCCCC--CcccEEeccCCcccCCCCcchh-------hhhccCceeeccCCccCCCCchhhcCCCCccEEEccc
Q 046000 171 FTGNLQLPHSKH--DFLHHLDVSSNNFTGKLPQDKG-------IILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSK 241 (470)
Q Consensus 171 i~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 241 (470)
+.+..+..+..+ .+++.++++++.+.+..+.... ..+++|++|++++|.+.+..+..+...
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---------- 235 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA---------- 235 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH----------
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc----------
Confidence 987766666654 6788888888877632222111 012445555555555443333333221
Q ss_pred cccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhh--cCCCCccEEECCCCcccCC
Q 046000 242 NNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGL--LKSNQLKELDMSNNMLSGH 319 (470)
Q Consensus 242 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~ 319 (470)
....+++.|++++|........ .+.+.......+ ...++|+.+++++|.+.+.
T Consensus 236 -----------~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 290 (455)
T 3v47_A 236 -----------IAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL 290 (455)
T ss_dssp -----------TTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred -----------ccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecCcccccc
Confidence 0114455555554433221100 000000000011 1234566666666666544
Q ss_pred cchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhc
Q 046000 320 IPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFR 398 (470)
Q Consensus 320 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~ 398 (470)
.+..+..+.. ++.|++++|.+.+..+..+..+++|+.|++++|.+.+.++..+ .+++|++|++++|++.+..+..+..
T Consensus 291 ~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 291 LKSVFSHFTD-LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp CTTTTTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred chhhcccCCC-CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 4555544444 6666666666665556667777888888888888877765554 6788888888888888777778888
Q ss_pred CCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccc
Q 046000 399 SSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPIS 441 (470)
Q Consensus 399 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 441 (470)
+++|+.|++++|++++..++.+..+++|++|++++|++.+..|
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8888888888888887666667788888888888888876555
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-38 Score=312.73 Aligned_cols=416 Identities=21% Similarity=0.200 Sum_probs=299.6
Q ss_pred cccccccCCCcCceeeccCCCCCCccc-----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhc
Q 046000 3 FLGAGLHKLKNLEALDLSFNNINGTVE-----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVN 77 (470)
Q Consensus 3 ~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~ 77 (470)
.+|..+. ++|++|++++|.+.+..+ +++|++|++++|.+++..|.+|+++++|++|++++|.++ .+|.. .
T Consensus 45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 4565443 899999999999987764 889999999999999888999999999999999999998 55655 8
Q ss_pred CcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcc--cEEEccCccc--cCccchH
Q 046000 78 LASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDL--KYLDLSHNNL--AGDFPAW 153 (470)
Q Consensus 78 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~i--~~~~~~~ 153 (470)
+++|++|++++|.+.+......+.++++|++|++++|.+... .+..+++| ++|++++|.+ .+..+..
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---------~~~~l~~L~L~~L~L~~n~l~~~~~~~~~ 190 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---------DLLPVAHLHLSCILLDLVSYHIKGGETES 190 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---------TTGGGTTSCEEEEEEEESSCCCCSSSCCE
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---------chhhhhhceeeEEEeecccccccccCccc
Confidence 999999999999998533236899999999999999877531 23333445 9999999988 5444433
Q ss_pred hhhcCC-CCcEEEccccccCCcc-CCCCCCCCcccEEeccCC----------------------------cccCCCCcch
Q 046000 154 ILQNNT-KLEVLCLTNNSFTGNL-QLPHSKHDFLHHLDVSSN----------------------------NFTGKLPQDK 203 (470)
Q Consensus 154 ~~~~~~-~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~l~~~----------------------------~~~~~~~~~~ 203 (470)
+ ..+. ..-.++++++.+.... ...+..+++|+.+++++| .+.+......
T Consensus 191 l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~ 269 (562)
T 3a79_B 191 L-QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269 (562)
T ss_dssp E-EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHH
T ss_pred c-cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHH
Confidence 2 2222 1112344444433211 112233444555555444 3221100000
Q ss_pred h--hhhccCceeeccCCccCCCCchhh-----cCCCCccEEEccccccccccCcccc---CCCcccEEecCCCcCCCcch
Q 046000 204 G--IILQKLLYIDMANNRFEGNLPSSI-----GDMKTLTFLHLSKNNFSGELSTLFT---GCVSLWFLDRSHNNFHDQIF 273 (470)
Q Consensus 204 ~--~~~~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~ 273 (470)
. ...++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ ......+. ...++++|++++|.+.....
T Consensus 270 ~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 348 (562)
T 3a79_B 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348 (562)
T ss_dssp HHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred HHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCcccccC
Confidence 0 112489999999999887777766 5666666666666655 11112121 12579999999998765332
Q ss_pred hhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccC--CcchhHHhhhccccEEEcCCCcccCCCch-hhh
Q 046000 274 PKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSG--HIPHWIANFSSYLEVLLMSKNFLKGNIPM-QLL 350 (470)
Q Consensus 274 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~ 350 (470)
...+++|+++++++|.+.+..+..+..+++|+.|++++|.+.+ .++..+..+.. ++.|++++|.+.+.+|. .+.
T Consensus 349 --~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~-L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 349 --PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS-LETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp --CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT-CCEEECTTSCCBSCCSSCCCC
T ss_pred --ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC-CCEEECCCCcCCCccChhhhc
Confidence 2578999999999999987778888899999999999999874 22344555555 99999999999874554 477
Q ss_pred ccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEE
Q 046000 351 NHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLL 430 (470)
Q Consensus 351 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 430 (470)
.+++|+.|++++|.+++..+.... ++|++|++++|+++ .+|..+..+++|+.|++++|+++...+..+..+++|+.|+
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE
T ss_pred CcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE
Confidence 889999999999998754443322 79999999999998 5666666999999999999999954334488999999999
Q ss_pred ccCcccCcc
Q 046000 431 LRGNYLEGP 439 (470)
Q Consensus 431 l~~n~i~~~ 439 (470)
+++|++.+.
T Consensus 504 l~~N~~~c~ 512 (562)
T 3a79_B 504 LHDNPWDCT 512 (562)
T ss_dssp CCSCCBCCC
T ss_pred ecCCCcCCC
Confidence 999999853
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.3e-37 Score=293.88 Aligned_cols=389 Identities=23% Similarity=0.243 Sum_probs=156.5
Q ss_pred CCCcCceeeccCCCCCCccc----cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEe
Q 046000 10 KLKNLEALDLSFNNINGTVE----SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLD 85 (470)
Q Consensus 10 ~~~~L~~L~ls~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 85 (470)
+.++|++|++++|.+...+. +++|++|++++|.+.+.+|.+++++++|+.+++..|. ..++++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCEEE
Confidence 45666777777666642222 5555555555555555555555555443111111100 01135555
Q ss_pred ccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEE
Q 046000 86 LSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLC 165 (470)
Q Consensus 86 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 165 (470)
+++|.+++ +|. ..++|++|++++|.+.... . ..++|++|++++|.+. .++. ..++|++|+
T Consensus 78 l~~~~l~~-lp~----~~~~L~~L~l~~n~l~~lp-------~---~~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~ 137 (454)
T 1jl5_A 78 LNNLGLSS-LPE----LPPHLESLVASCNSLTELP-------E---LPQSLKSLLVDNNNLK-ALSD----LPPLLEYLG 137 (454)
T ss_dssp CTTSCCSC-CCS----CCTTCSEEECCSSCCSSCC-------C---CCTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred ecCCcccc-CCC----CcCCCCEEEccCCcCCccc-------c---ccCCCcEEECCCCccC-cccC----CCCCCCEEE
Confidence 55555442 221 1244555555554443211 0 0134555555555544 2221 113455555
Q ss_pred ccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccc
Q 046000 166 LTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFS 245 (470)
Q Consensus 166 l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 245 (470)
+++|.+.+. + .+..+++|++|++++|.+. .+|.. .++|++|++++|.+.+ +| .++.+++|+.|++++|.+.
T Consensus 138 L~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 138 VSNNQLEKL-P-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCCC-c-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 555555432 1 3455555555555555554 23322 2355555555555543 23 3555555555555555544
Q ss_pred cccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHH
Q 046000 246 GELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIA 325 (470)
Q Consensus 246 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 325 (470)
.. +.. .++|++|++++|.+... + .+..+++|+.+++++|.+.+. +. ..++|+.|++++|.+.+ +|..
T Consensus 209 ~l-~~~---~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~-- 275 (454)
T 1jl5_A 209 KL-PDL---PLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL-- 275 (454)
T ss_dssp SC-CCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC--
T ss_pred cC-CCC---cCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc--
Confidence 31 111 13555555555555421 1 244555555555555555432 11 12455555555555542 3322
Q ss_pred hhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEE
Q 046000 326 NFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTL 405 (470)
Q Consensus 326 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 405 (470)
...++.+++++|.+++ ++. ..++|+.|++++|.+.+++.. .++|++|++++|++.+ +|.. +++|+.|
T Consensus 276 --~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L 342 (454)
T 1jl5_A 276 --PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIE-LPAL---PPRLERL 342 (454)
T ss_dssp --CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred --cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence 1235555555555542 111 013555555555555443211 1355555555555553 2222 3555555
Q ss_pred EcCCccceeecchhhhcCCCCcEEEccCcccCc--ccchhhccC-------------CCCCeEEccCccccc--ccCCCc
Q 046000 406 DLRDNGFSGIISDQINESSNLRVLLLRGNYLEG--PISNQFCQL-------------RRLGVMDLSHNRING--SIPSCF 468 (470)
Q Consensus 406 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~~~l-------------~~L~~l~l~~n~~~~--~~p~~~ 468 (470)
++++|+++. +|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|..+
T Consensus 343 ~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 343 IASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred ECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 555555552 333 24555555555555554 445555444 556666666666665 555544
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.6e-35 Score=283.54 Aligned_cols=344 Identities=25% Similarity=0.290 Sum_probs=209.1
Q ss_pred cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhcccccccee
Q 046000 30 SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVL 109 (470)
Q Consensus 30 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 109 (470)
+.++++|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcCCCCCCEE
Confidence 6778888888888774 33 37778888888888888875443 7888888888888888774432 7778888888
Q ss_pred cccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEe
Q 046000 110 RLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLD 189 (470)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~ 189 (470)
++++|.+.... .+..+++|++|++++|.+. .++. +..+++|+.|++++ .+.. ..++..+++|++|+
T Consensus 118 ~L~~n~l~~~~--------~~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~-~~~~--~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 118 TLFNNQITDID--------PLKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLD 183 (466)
T ss_dssp ECCSSCCCCCG--------GGTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEEE-SCCC--CGGGTTCTTCCEEE
T ss_pred ECCCCCCCCCh--------HHcCCCCCCEEECCCCccC-CChh--hccCCcccEeecCC-cccC--chhhccCCCCCEEE
Confidence 88877655221 2566677888888888776 4443 55677777777753 3332 22366677777777
Q ss_pred ccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCC
Q 046000 190 VSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFH 269 (470)
Q Consensus 190 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 269 (470)
+++|.+. .++. +..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+... ..+..+++|++|++++|.+.
T Consensus 184 l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 256 (466)
T 1o6v_A 184 ISSNKVS-DISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256 (466)
T ss_dssp CCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CcCCcCC-CChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccc
Confidence 7777765 3322 3346677777777777664333 55667777777777666543 23555666666666666665
Q ss_pred CcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhh
Q 046000 270 DQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQL 349 (470)
Q Consensus 270 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~ 349 (470)
.... +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..++. ++.|++++|.+.+..+ +
T Consensus 257 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~-L~~L~L~~n~l~~~~~--~ 327 (466)
T 1o6v_A 257 NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN-LTYLTLYFNNISDISP--V 327 (466)
T ss_dssp CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT-CSEEECCSSCCSCCGG--G
T ss_pred cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC-CCEEECcCCcCCCchh--h
Confidence 4332 5566666666666666654332 5556666666666666553222 233332 5555555555543332 3
Q ss_pred hccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce
Q 046000 350 LNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS 413 (470)
Q Consensus 350 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 413 (470)
..+++|+.|++++|.+.+.+ ....+++|++|++++|++.+..| +..+++|+.|++++|+++
T Consensus 328 ~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 45555555555555555442 12245555555555555554433 445555555555555554
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.9e-35 Score=282.37 Aligned_cols=347 Identities=22% Similarity=0.252 Sum_probs=262.3
Q ss_pred hcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCccc
Q 046000 52 NNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQ 131 (470)
Q Consensus 52 ~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 131 (470)
..++++++|+++++.+.. +| .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.... + +.
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~-------~-~~ 109 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADIT-------P-LA 109 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG-------G-GT
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccCh-------h-hc
Confidence 456789999999999874 44 48889999999999999885432 889999999999998765322 2 67
Q ss_pred ccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCc
Q 046000 132 LKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLL 211 (470)
Q Consensus 132 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 211 (470)
.+++|++|++++|.+. .++. +..+++|+.|++++|.+... ..+..+++|++|++++ .+. ..+. +..+++|+
T Consensus 110 ~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~-~~~~--~~~l~~L~ 180 (466)
T 1o6v_A 110 NLTNLTGLTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVT-DLKP--LANLTTLE 180 (466)
T ss_dssp TCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCC-CCGG--GTTCTTCC
T ss_pred CCCCCCEEECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-ccc-Cchh--hccCCCCC
Confidence 7889999999999988 5554 66899999999999988863 3477888999999864 333 2222 44578899
Q ss_pred eeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccc
Q 046000 212 YIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK 291 (470)
Q Consensus 212 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 291 (470)
+|++++|.+.+. ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.
T Consensus 181 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 181 RLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred EEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCc
Confidence 999999887743 347888899999999888775544 56688888899888887763 456778888888888888
Q ss_pred cccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccc
Q 046000 292 FSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTS 371 (470)
Q Consensus 292 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 371 (470)
+.+..+ +..+++|+.|++++|.+.+. +. +..+.. ++.|++++|.+.+..+ +..+++|+.|++++|.+.+.++
T Consensus 255 l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~-L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 326 (466)
T 1o6v_A 255 ISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTA-LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP- 326 (466)
T ss_dssp CCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTT-CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-
T ss_pred cccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCc-cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-
Confidence 875443 67788888888888887743 32 444444 7888888887764333 6677788888888887777655
Q ss_pred ccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 372 SFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 372 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
...+++|++|++++|++.+. ..+..+++|+.|++++|++.+..| +..+++|++|++++|++++
T Consensus 327 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 33677888888888877754 456677888888888888776555 6777888888888887764
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1e-35 Score=283.53 Aligned_cols=376 Identities=23% Similarity=0.245 Sum_probs=158.4
Q ss_pred CcccccccCCCcCceeeccCCCCCCccc-----cccc-------------cccccccccCCCCchHhhhcCCCCcEEEcc
Q 046000 2 LFLGAGLHKLKNLEALDLSFNNINGTVE-----SQES-------------FELNLAKNNIGGHLLDCLNNMTRLKVLDTS 63 (470)
Q Consensus 2 ~~l~~~l~~~~~L~~L~ls~~~~~~~~~-----~~~L-------------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 63 (470)
+.+|++++++++|++|++++|.+.+..+ +.+| ++|++++|.+++. |. -.++|++|+++
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~---~~~~L~~L~l~ 99 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE---LPPHLESLVAS 99 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS---CCTTCSEEECC
T ss_pred hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC---CcCCCCEEEcc
Confidence 5689999999999999999998864433 4444 5566666665532 22 12456666666
Q ss_pred CCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccC
Q 046000 64 FNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSH 143 (470)
Q Consensus 64 ~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 143 (470)
+|.+++ +|+. .++|++|++++|.+.+ ++. ..++|++|++++|.+... +.+..+++|++|++++
T Consensus 100 ~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~l--------p~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 100 CNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEKL--------PELQNSSFLKIIDVDN 162 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSSC--------CCCTTCTTCCEEECCS
T ss_pred CCcCCc-cccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCCC--------cccCCCCCCCEEECCC
Confidence 666653 3322 2556666666665542 110 014555666655544311 1244555566666666
Q ss_pred ccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCC
Q 046000 144 NNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGN 223 (470)
Q Consensus 144 ~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 223 (470)
|.+. .+|. ..++|+.|++++|.+.+. + .+..+++|++|++++|.+. .+|.. .++|++|++++|.+. .
T Consensus 163 N~l~-~lp~----~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~n~l~-~ 229 (454)
T 1jl5_A 163 NSLK-KLPD----LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-E 229 (454)
T ss_dssp SCCS-CCCC----CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-S
T ss_pred CcCc-ccCC----CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCC-cCCCC----cCcccEEECcCCcCC-c
Confidence 5555 3332 123555555555555542 1 3455555555555555554 23322 235555555555554 3
Q ss_pred CchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCC
Q 046000 224 LPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKS 303 (470)
Q Consensus 224 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 303 (470)
+| .+..+++|+.|++++|.+.... . ..++|++|++++|.+.... . ..++|+.+++++|.+.+... ..
T Consensus 230 lp-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~N~l~~l~-~---~~~~L~~L~ls~N~l~~l~~----~~ 296 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNLLKTLP-D---LPPSLEALNVRDNYLTDLP-E---LPQSLTFLDVSENIFSGLSE----LP 296 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSCCSSCC-S---CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSEESC----CC
T ss_pred cc-ccCCCCCCCEEECCCCcCCccc-c---cccccCEEECCCCcccccC-c---ccCcCCEEECcCCccCcccC----cC
Confidence 33 2555555555555555544321 1 1245555555555544311 1 12445555555554442110 11
Q ss_pred CCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEc
Q 046000 304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYV 383 (470)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l 383 (470)
++|+.|++++|.+.+ ++. .+ ++|+.|++++|.+.+++.. +++|++|++
T Consensus 297 ~~L~~L~l~~N~l~~-i~~----~~------------------------~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L 344 (454)
T 1jl5_A 297 PNLYYLNASSNEIRS-LCD----LP------------------------PSLEELNVSNNKLIELPAL---PPRLERLIA 344 (454)
T ss_dssp TTCCEEECCSSCCSE-ECC----CC------------------------TTCCEEECCSSCCSCCCCC---CTTCCEEEC
T ss_pred CcCCEEECcCCcCCc-ccC----Cc------------------------CcCCEEECCCCcccccccc---CCcCCEEEC
Confidence 344555555554431 111 11 2445555555544443322 344555555
Q ss_pred cCCcccccCccchhcCCCccEEEcCCcccee--ecchhhhcC-------------CCCcEEEccCcccCc--ccchhhcc
Q 046000 384 QRNDLSGTIPNALFRSSKLMTLDLRDNGFSG--IISDQINES-------------SNLRVLLLRGNYLEG--PISNQFCQ 446 (470)
Q Consensus 384 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~~-------------~~L~~L~l~~n~i~~--~~~~~~~~ 446 (470)
++|.++. +|. .+++|+.|++++|++.+ .+|..++.+ ++|++|++++|++++ .+|
T Consensus 345 ~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP----- 415 (454)
T 1jl5_A 345 SFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP----- 415 (454)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------------------
T ss_pred CCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch-----
Confidence 5555442 222 23445555555555444 334444443 789999999998885 444
Q ss_pred CCCCCeEEccCcccccccCC
Q 046000 447 LRRLGVMDLSHNRINGSIPS 466 (470)
Q Consensus 447 l~~L~~l~l~~n~~~~~~p~ 466 (470)
++++.|.+.+|.+.+.+|.
T Consensus 416 -~sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 416 -ESVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp --------------------
T ss_pred -hhHhheeCcCcccCCcccc
Confidence 3456677888887766654
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-35 Score=283.35 Aligned_cols=360 Identities=19% Similarity=0.165 Sum_probs=214.8
Q ss_pred cccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccc
Q 046000 40 KNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNML 119 (470)
Q Consensus 40 ~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 119 (470)
.+......+..++++++|++|++++|.+.+. | .+..+++|++|++++|.+.+. + +..+++|++|++++|.+...
T Consensus 27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~---~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 27 AFEMQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D---LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp HTTCCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC
T ss_pred hcCcCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c---cccCCCCCEEECcCCCCcee
Confidence 3333334444566666666666666666643 3 466666666666666666532 2 55666666666666655421
Q ss_pred cccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCC
Q 046000 120 QLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKL 199 (470)
Q Consensus 120 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 199 (470)
.+..+++|++|++++|.+. .++ +..+++|+.|++++|.+++. ++..+++|++|++++|...+.+
T Consensus 101 ---------~~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 101 ---------DVTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL 164 (457)
T ss_dssp ---------CCTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC
T ss_pred ---------ecCCCCcCCEEECCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc
Confidence 1445566677777776666 343 44666677777776666642 3556666777777766444343
Q ss_pred CcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCc
Q 046000 200 PQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNL 279 (470)
Q Consensus 200 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 279 (470)
+ +..+++|++|++++|.+.+ ++ +..+++|+.|++++|.+... .+..+++|++|++++|++.... +..+
T Consensus 165 ~---~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l 232 (457)
T 3bz5_A 165 D---VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPL 232 (457)
T ss_dssp C---CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTC
T ss_pred c---cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---cccc
Confidence 2 2235667777777776664 33 56667777777777766643 2556677777777777666521 5566
Q ss_pred ccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEE
Q 046000 280 TRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS 359 (470)
Q Consensus 280 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 359 (470)
++|+.+++++|.+.+.. +..+++|+.++++++. ++.+++++|...+.+| +..+++|+.|+
T Consensus 233 ~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~---------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~ 292 (457)
T 3bz5_A 233 TQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD---------------LLEIDLTHNTQLIYFQ--AEGCRKIKELD 292 (457)
T ss_dssp TTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC---------------CSCCCCTTCTTCCEEE--CTTCTTCCCCC
T ss_pred CCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC---------------CCEEECCCCccCCccc--ccccccCCEEE
Confidence 77777777777666443 2345556665555442 3344445554433333 23445555555
Q ss_pred ccCccccCcccc---------ccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEE
Q 046000 360 VSENCLSGFMTS---------SFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLL 430 (470)
Q Consensus 360 l~~~~l~~~~~~---------~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 430 (470)
+++|......+. ...+++|++|++++|++++. .+..+++|+.|++++|++.+ ++.|+.|+
T Consensus 293 Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~ 361 (457)
T 3bz5_A 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIP 361 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSS
T ss_pred CCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------cccccccc
Confidence 555532111110 01346777788888877753 26677778888888887764 24555666
Q ss_pred ccCcccCcccchhhccCCCCCeEEccCcccccccCCCcc
Q 046000 431 LRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCFT 469 (470)
Q Consensus 431 l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~~ 469 (470)
+++|.+.+. ..+..|..+++++|++++.+|..+.
T Consensus 362 l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 362 ALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp GGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred ccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 777777643 3455677888899999988888764
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-35 Score=282.84 Aligned_cols=329 Identities=19% Similarity=0.154 Sum_probs=271.9
Q ss_pred CcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCcee
Q 046000 134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI 213 (470)
Q Consensus 134 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 213 (470)
+++++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 32 ~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 46888999999888 555556678899999999999888777788889999999999999888 6676666668999999
Q ss_pred eccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccc
Q 046000 214 DMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS 293 (470)
Q Consensus 214 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 293 (470)
++++|.+....+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 99999998777888999999999999999998888888999999999999999998877778899999999999999998
Q ss_pred cccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc
Q 046000 294 GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF 373 (470)
Q Consensus 294 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 373 (470)
+..+..+..+++|+.|++++|...+.++........ ++.|++++|.++...+..+..+++|+.|++++|.+..++...+
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC-CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSC
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCcc-ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhc
Confidence 777778889999999999998877777776665554 9999999999885555678889999999999999988877666
Q ss_pred -ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCe
Q 046000 374 -SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGV 452 (470)
Q Consensus 374 -~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 452 (470)
.+++|++|++++|++.+..+..+..+++|+.|++++|+++...+..+..+++|++|++++|++...- ....-....+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c-~~~~~~~~~~~ 347 (477)
T 2id5_A 269 HELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC-RLLWVFRRRWR 347 (477)
T ss_dssp TTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSG-GGHHHHTTTTS
T ss_pred cccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCcc-chHhHHhhhhc
Confidence 7899999999999999888888999999999999999998777777888999999999999987422 11111233344
Q ss_pred EEccCcccccccCC
Q 046000 453 MDLSHNRINGSIPS 466 (470)
Q Consensus 453 l~l~~n~~~~~~p~ 466 (470)
+.+.++..+..-|.
T Consensus 348 ~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 348 LNFNRQQPTCATPE 361 (477)
T ss_dssp SCCTTCCCBEEESG
T ss_pred cccCccCceeCCch
Confidence 44555544444443
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=281.84 Aligned_cols=324 Identities=19% Similarity=0.134 Sum_probs=285.5
Q ss_pred ccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeec
Q 046000 136 LKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDM 215 (470)
Q Consensus 136 L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 215 (470)
-+.++.++..++ .+|..+ .++++.|++++|.+....+..+..+++|++|++++|.+.+..|. .+..+++|++|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEEC
Confidence 356778888777 777643 46899999999999988888899999999999999999854444 4455899999999
Q ss_pred cCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccc
Q 046000 216 ANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGK 295 (470)
Q Consensus 216 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 295 (470)
++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 99999876666789999999999999999988888999999999999999999887778899999999999999999987
Q ss_pred cchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-c
Q 046000 296 IEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-S 374 (470)
Q Consensus 296 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~ 374 (470)
.+..+..+++|+.|++++|.+.+..+..+..+.. ++.|++++|...+.++.......+|+.|++++|.++.++...+ .
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 246 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR-LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH 246 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTT-CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcc-cceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC
Confidence 7788999999999999999998655556666655 9999999998777777776667799999999999998886555 7
Q ss_pred cCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEE
Q 046000 375 LSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMD 454 (470)
Q Consensus 375 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~ 454 (470)
+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 89999999999999988888899999999999999999988899999999999999999999988888899999999999
Q ss_pred ccCcccccccC
Q 046000 455 LSHNRINGSIP 465 (470)
Q Consensus 455 l~~n~~~~~~p 465 (470)
+++|+++...+
T Consensus 327 l~~N~l~c~c~ 337 (477)
T 2id5_A 327 LDSNPLACDCR 337 (477)
T ss_dssp CCSSCEECSGG
T ss_pred ccCCCccCccc
Confidence 99999986543
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.1e-32 Score=255.34 Aligned_cols=304 Identities=22% Similarity=0.263 Sum_probs=201.7
Q ss_pred cCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCce
Q 046000 133 KHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLY 212 (470)
Q Consensus 133 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 212 (470)
+++|++|+++++.+. .++. +..+++|++|++++|.+.+... +..+++|++|++++|.+. .++ .+..+++|++
T Consensus 43 l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~--~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS--ALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG--GGTTCTTCSE
T ss_pred cccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cch--HHcCCCcCCE
Confidence 344555555555544 3332 3345555555555555543222 445555555555555554 222 1333556666
Q ss_pred eeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccccc
Q 046000 213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKF 292 (470)
Q Consensus 213 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 292 (470)
|++++|.+.+. +. +..+++|+.|++++|...... ..+..+++|++|++++|.+..... +..+++|+.+++++|.+
T Consensus 115 L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 66666665532 22 556666666666666433222 225566667777776666654332 55667777777777766
Q ss_pred ccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccc
Q 046000 293 SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSS 372 (470)
Q Consensus 293 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 372 (470)
.+... +..+++|+.+++++|.+.+..+ +..+.. ++.|++++|.+++..+ +..+++|++|++++|.+.+++ ..
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~~ 261 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTR-LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN-AV 261 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred ccccc--ccCCCccceeecccCCCCCCch--hhcCCc-CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh-hH
Confidence 64332 6667777777777777763322 333443 7788888887764333 778899999999999988763 23
Q ss_pred cccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCe
Q 046000 373 FSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGV 452 (470)
Q Consensus 373 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 452 (470)
..+++|++|++++|++.+. ..+..+++|+.|++++|++.+..+..+..+++|++|++++|++++..| +..++.|+.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 337 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDS 337 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSE
T ss_pred hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccce
Confidence 3789999999999999854 457889999999999999988888889999999999999999997666 888999999
Q ss_pred EEccCcccc
Q 046000 453 MDLSHNRIN 461 (470)
Q Consensus 453 l~l~~n~~~ 461 (470)
|++++|+|+
T Consensus 338 L~l~~N~i~ 346 (347)
T 4fmz_A 338 ADFANQVIK 346 (347)
T ss_dssp ESSSCC---
T ss_pred eehhhhccc
Confidence 999999987
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-33 Score=268.67 Aligned_cols=348 Identities=19% Similarity=0.197 Sum_probs=198.9
Q ss_pred ccccCCCcCceeeccCCCCCCccc---cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCc
Q 046000 6 AGLHKLKNLEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVE 82 (470)
Q Consensus 6 ~~l~~~~~L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 82 (470)
..++++++|++|++++|.+.+.+. +++|++|++++|.+++. + ++.+++|++|++++|.+.+. + ++.+++|+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~ 109 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLT 109 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCC
T ss_pred cChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCC
Confidence 356677888888888887765433 66777777777777753 3 67777777777777777643 3 66777777
Q ss_pred EEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCc
Q 046000 83 YLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLE 162 (470)
Q Consensus 83 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~ 162 (470)
+|++++|.+.+ .+ +..+++|++|++++|.+... .+..+++|++|++++|...+.++ +..+++|+
T Consensus 110 ~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---------~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~ 173 (457)
T 3bz5_A 110 YLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---------DVSHNTQLTELDCHLNKKITKLD---VTPQTQLT 173 (457)
T ss_dssp EEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---------CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCC
T ss_pred EEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---------ccccCCcCCEEECCCCCcccccc---cccCCcCC
Confidence 77777777764 23 66677777777777765532 14455667777777774443442 34567777
Q ss_pred EEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcccc
Q 046000 163 VLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKN 242 (470)
Q Consensus 163 ~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 242 (470)
.|++++|.+++. ++..+++|+.|++++|.+.+ ++ +..+++|++|++++|.+.+ +| +..+++|+.|++++|
T Consensus 174 ~L~ls~n~l~~l---~l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 174 TLDCSFNKITEL---DVSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp EEECCSSCCCCC---CCTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred EEECCCCcccee---ccccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence 777777776642 25666777777777777663 22 2336677777777777764 33 666777777777777
Q ss_pred ccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcch
Q 046000 243 NFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPH 322 (470)
Q Consensus 243 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 322 (470)
.+.... +..+++|+.|+++.+. |+.+++++|...+..+ +..+++|+.|++++|...+.+|.
T Consensus 244 ~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 244 PLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred cCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 766543 2344555555554432 3334444444333322 23455666666666654444432
Q ss_pred hHHhh-------hccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccc
Q 046000 323 WIANF-------SSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNA 395 (470)
Q Consensus 323 ~~~~~-------~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 395 (470)
....+ .+.++.|++++|.+++ ++ +..+++|+.|++++|++.+ ++.|..|.+.+|.+.+.
T Consensus 305 ~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~-------l~~L~~L~l~~n~l~g~---- 370 (457)
T 3bz5_A 305 QAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD-------FSSVGKIPALNNNFEAE---- 370 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB-------CTTGGGSSGGGTSEEEE----
T ss_pred CCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC-------ccccccccccCCcEEec----
Confidence 11000 0114444444444443 11 3444444444444444443 12333344444444322
Q ss_pred hhcCCCccEEEcCCccceeecchh
Q 046000 396 LFRSSKLMTLDLRDNGFSGIISDQ 419 (470)
Q Consensus 396 l~~~~~L~~L~l~~n~l~~~~~~~ 419 (470)
..+..|..+++++|.+++.+|..
T Consensus 371 -~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 371 -GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp -EEEEECCCBCCBTTBEEEECCTT
T ss_pred -ceeeecCccccccCcEEEEcChh
Confidence 12344555666666666655543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-32 Score=259.10 Aligned_cols=309 Identities=21% Similarity=0.206 Sum_probs=216.8
Q ss_pred cCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCce
Q 046000 133 KHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLY 212 (470)
Q Consensus 133 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 212 (470)
+++++.++++++.+. .+|..++..+++|++|++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 356777777777776 677777777777888888877777666667777777888888877777 444444445777888
Q ss_pred eeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccccc
Q 046000 213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKF 292 (470)
Q Consensus 213 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 292 (470)
|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88888777744444467777888888888777766666777777888888887777654 244567777777777766
Q ss_pred ccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccc
Q 046000 293 SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSS 372 (470)
Q Consensus 293 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 372 (470)
.+. ...+++++|++++|.+. .++.. ....++.|++++|.+++. ..+..+++|+.|++++|.+.+..+..
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 532 23457778888887776 33322 123477888888877642 45677778888888888777765554
Q ss_pred c-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCC
Q 046000 373 F-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLG 451 (470)
Q Consensus 373 ~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 451 (470)
+ .+++|++|++++|++.+ .+..+..+++|+.|++++|++. .++..+..+++|++|++++|+++.. + +..++.|+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~ 342 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 342 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence 4 67788888888887774 3444566778888888888777 4555577778888888888887743 2 66677788
Q ss_pred eEEccCccccc
Q 046000 452 VMDLSHNRING 462 (470)
Q Consensus 452 ~l~l~~n~~~~ 462 (470)
.|++++|+++.
T Consensus 343 ~L~l~~N~~~~ 353 (390)
T 3o6n_A 343 NLTLSHNDWDC 353 (390)
T ss_dssp EEECCSSCEEH
T ss_pred EEEcCCCCccc
Confidence 88888887764
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.7e-31 Score=247.39 Aligned_cols=307 Identities=20% Similarity=0.268 Sum_probs=188.1
Q ss_pred hhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHh
Q 046000 75 IVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWI 154 (470)
Q Consensus 75 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 154 (470)
+..+++|++|+++++.+. ..+ .+..+++|++|++++|.+.... .+..+++|++|++++|.+. .++.
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~--~~~~~~~L~~L~l~~n~i~~~~--------~~~~l~~L~~L~L~~n~i~-~~~~-- 105 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ--GIEYLTNLEYLNLNGNQITDIS--------PLSNLVKLTNLYIGTNKIT-DISA-- 105 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCG--------GGTTCTTCCEEECCSSCCC-CCGG--
T ss_pred chhcccccEEEEeCCccc-cch--hhhhcCCccEEEccCCccccch--------hhhcCCcCCEEEccCCccc-CchH--
Confidence 345666667777666665 222 2555555555555555443111 1344455555555555554 2322
Q ss_pred hhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCc
Q 046000 155 LQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTL 234 (470)
Q Consensus 155 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 234 (470)
+..+++|++|++++|.+..... +.. +++|++|++++|..... ...+..+++|
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~--~~~-------------------------l~~L~~L~l~~n~~~~~-~~~~~~l~~L 157 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP--LAN-------------------------LTKMYSLNLGANHNLSD-LSPLSNMTGL 157 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG--GTT-------------------------CTTCCEEECTTCTTCCC-CGGGTTCTTC
T ss_pred HcCCCcCCEEECcCCcccCchh--hcc-------------------------CCceeEEECCCCCCccc-ccchhhCCCC
Confidence 3344455555555444443221 334 44555555555533322 2225555555
Q ss_pred cEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCC
Q 046000 235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNN 314 (470)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 314 (470)
+.|++++|.+....+ +..+++|++|++++|.+.+... +..+++|+.+++++|.+.+..+ +..+++|++|++++|
T Consensus 158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred cEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence 566655555543322 4555666666666665554322 5556666666666666653332 556667777777777
Q ss_pred cccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCcc
Q 046000 315 MLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPN 394 (470)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 394 (470)
.+.+ .+. +..+.. ++.|++++|.+++ + ..+..+++|+.|++++|.+.+++. ...+++|++|++++|++.+..+.
T Consensus 232 ~l~~-~~~-~~~l~~-L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 232 KITD-LSP-LANLSQ-LTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCCC-CGG-GTTCTT-CCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCGGGHH
T ss_pred ccCC-Ccc-hhcCCC-CCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCChh-hcCCCCCCEEECcCCcCCCcChh
Confidence 6653 322 333333 7777777777653 2 456778999999999999988742 34789999999999999988888
Q ss_pred chhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000 395 ALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE 437 (470)
Q Consensus 395 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~ 437 (470)
.+..+++|+.|++++|++++..+ +..+++|++|++++|+|+
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 89999999999999999987655 888999999999999986
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.1e-32 Score=254.29 Aligned_cols=264 Identities=21% Similarity=0.206 Sum_probs=171.3
Q ss_pred cccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccC
Q 046000 131 QLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKL 210 (470)
Q Consensus 131 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 210 (470)
..+++|++|++++|.+. .+++..+..+++|+.|++++|.+.......+..+++|++|++++|.+
T Consensus 90 ~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l--------------- 153 (390)
T 3o6n_A 90 AYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL--------------- 153 (390)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC---------------
T ss_pred cCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc---------------
Confidence 33445566666666555 34433444555566666665555533333344445555555555544
Q ss_pred ceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccc
Q 046000 211 LYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN 290 (470)
Q Consensus 211 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 290 (470)
.+..+..+..+++|+.|++++|.+.... +..+++|+.+++++|.+.. +...++|+.+++++|
T Consensus 154 ----------~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n 215 (390)
T 3o6n_A 154 ----------ERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN 215 (390)
T ss_dssp ----------CBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSS
T ss_pred ----------CccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc-----cCCCCcceEEECCCC
Confidence 4333444455555555555555544321 3334555555555554432 123345666666666
Q ss_pred ccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccc
Q 046000 291 KFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMT 370 (470)
Q Consensus 291 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 370 (470)
.+..... ...++|+.|++++|.+.+. ..+..++. ++.|++++|.+.+..+..+..+++|+.|++++|.+..++.
T Consensus 216 ~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (390)
T 3o6n_A 216 SINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 289 (390)
T ss_dssp CCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC
T ss_pred eeeeccc---cccccccEEECCCCCCccc--HHHcCCCC-ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc
Confidence 6653322 2246778888888877632 34455554 8888888888877778888889999999999999988776
Q ss_pred cccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 371 SSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 371 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
....+++|++|++++|++. .++..+..+++|+.|++++|++... + +..+++|++|++++|++..
T Consensus 290 ~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred ccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 6667899999999999998 5566678889999999999998854 2 6778999999999999875
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.3e-32 Score=268.89 Aligned_cols=310 Identities=21% Similarity=0.209 Sum_probs=243.4
Q ss_pred cCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCce
Q 046000 133 KHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLY 212 (470)
Q Consensus 133 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 212 (470)
+.+++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 356888888888887 788877888888899998888888777778888888899999888887 455555555888899
Q ss_pred eeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccccc
Q 046000 213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKF 292 (470)
Q Consensus 213 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 292 (470)
|++++|.+....+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+... .+..+++|+.+++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99988888865555678888899999988888877777888888899999988888764 245678888888888877
Q ss_pred ccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccc
Q 046000 293 SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSS 372 (470)
Q Consensus 293 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 372 (470)
.+. ...++|+.|++++|.+. .++... +..++.|++++|.+++ +..+..+++|+.|++++|.+.+.++..
T Consensus 205 ~~l-----~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 205 STL-----AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp SEE-----ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-----cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 632 34567888999888876 333221 2348888998888874 366778889999999999888776655
Q ss_pred c-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCC
Q 046000 373 F-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLG 451 (470)
Q Consensus 373 ~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 451 (470)
+ .+++|++|++++|.+.+ ++..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+. + +..++.|+
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~ 348 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 348 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCC
Confidence 5 78889999999998885 4555667888999999999888 4666778888999999999988753 2 66778889
Q ss_pred eEEccCcccccc
Q 046000 452 VMDLSHNRINGS 463 (470)
Q Consensus 452 ~l~l~~n~~~~~ 463 (470)
.|++++|++++.
T Consensus 349 ~L~l~~N~~~~~ 360 (597)
T 3oja_B 349 NLTLSHNDWDCN 360 (597)
T ss_dssp EEECCSSCEEHH
T ss_pred EEEeeCCCCCCh
Confidence 999999888754
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=4.7e-35 Score=282.31 Aligned_cols=382 Identities=18% Similarity=0.129 Sum_probs=195.8
Q ss_pred ccccccccccccCCCCchHh-hhcCCCCcEEEccCCcccc----ccchhhhcCcCCcEEeccCccCcCccChhhhcccc-
Q 046000 31 QESFELNLAKNNIGGHLLDC-LNNMTRLKVLDTSFNQLSG----SLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHS- 104 (470)
Q Consensus 31 ~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~- 104 (470)
+.+++|+++++.++...... +..+++|++|++++|.+.+ .+++.+..+++|++|++++|.+.+..+......++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34555555555555433333 6677777777777777663 23555666777777777777765433322333344
Q ss_pred ---ccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhh----cCCCCcEEEccccccCCcc--
Q 046000 105 ---KLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQ----NNTKLEVLCLTNNSFTGNL-- 175 (470)
Q Consensus 105 ---~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~----~~~~L~~L~l~~~~i~~~~-- 175 (470)
+|++|++++|.+..... ..+...+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGC--GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGH--HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred CCCceeEEEccCCCCCHHHH--HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 56666666665442110 112234455566777777777665332322221 2345666666666554321
Q ss_pred --CCCCCCCCcccEEeccCCcccCCCCcchhhh----hccCceeeccCCccCCC----CchhhcCCCCccEEEccccccc
Q 046000 176 --QLPHSKHDFLHHLDVSSNNFTGKLPQDKGII----LQKLLYIDMANNRFEGN----LPSSIGDMKTLTFLHLSKNNFS 245 (470)
Q Consensus 176 --~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~ 245 (470)
...+..+++|++|++++|.+.+..+..+... .++|++|++++|.+.+. ++..+..++
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~------------- 227 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA------------- 227 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT-------------
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC-------------
Confidence 1222234455555555554432211111111 12455555555544421 233334444
Q ss_pred cccCccccCCCcccEEecCCCcCCCcchhh-----hcCcccccEEEccccccccc----cchhhcCCCCccEEECCCCcc
Q 046000 246 GELSTLFTGCVSLWFLDRSHNNFHDQIFPK-----YMNLTRLWFLYLDNNKFSGK----IEDGLLKSNQLKELDMSNNML 316 (470)
Q Consensus 246 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~ 316 (470)
+|++|++++|.+.+..... +..+++|+.|++++|.+++. .+..+..+++|++|++++|.+
T Consensus 228 -----------~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 228 -----------SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp -----------TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred -----------CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 4444444444443322111 11345555666655555432 233445566777777777766
Q ss_pred cCCcchhHHhhh----ccccEEEcCCCcccCC----CchhhhccCCCeEEEccCccccCcccccc------ccCcccEEE
Q 046000 317 SGHIPHWIANFS----SYLEVLLMSKNFLKGN----IPMQLLNHGSLQLLSVSENCLSGFMTSSF------SLSSLVHLY 382 (470)
Q Consensus 317 ~~~~~~~~~~~~----~~l~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~------~~~~L~~L~ 382 (470)
.+..+..+.... +.++.|++++|.+++. ++..+..+++|+.|++++|.+.+.+...+ ..++|++|+
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 543333333321 2356666666655433 34445556777777777776655433322 145677777
Q ss_pred ccCCcccc----cCccchhcCCCccEEEcCCccceeecchhhh-----cCCCCcEEEccCcccCc
Q 046000 383 VQRNDLSG----TIPNALFRSSKLMTLDLRDNGFSGIISDQIN-----ESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 383 l~~~~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~~~~L~~L~l~~n~i~~ 438 (470)
+++|++++ .++..+..+++|+.|++++|++.+.....+. ...+|+.|++.++.+..
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 77776664 4455566667777777777766543222111 12356666666665543
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=7.6e-35 Score=280.82 Aligned_cols=380 Identities=20% Similarity=0.112 Sum_probs=258.3
Q ss_pred CCCcEEEccCCccccccch-hhhcCcCCcEEeccCccCcCccC---hhhhccccccceecccCCCCccccccccCCCCcc
Q 046000 55 TRLKVLDTSFNQLSGSLPS-VIVNLASVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTF 130 (470)
Q Consensus 55 ~~L~~L~l~~~~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 130 (470)
++|++|+++++.+.+.... .+..+++|++|++++|.+.+... ...+..+++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~------------------------- 57 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA------------------------- 57 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTT-------------------------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCC-------------------------
Confidence 4678888888877644333 36777888888888887653211 123334444
Q ss_pred cccCcccEEEccCccccCccchHhhhcCC----CCcEEEccccccCC----ccCCCCCCCCcccEEeccCCcccCCCCcc
Q 046000 131 QLKHDLKYLDLSHNNLAGDFPAWILQNNT----KLEVLCLTNNSFTG----NLQLPHSKHDFLHHLDVSSNNFTGKLPQD 202 (470)
Q Consensus 131 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~----~L~~L~l~~~~i~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 202 (470)
|++|++++|.+.+..+..+...++ +|++|++++|.+.. ..+..+..+++|++|++++|.+.+..+..
T Consensus 58 -----L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 132 (461)
T 1z7x_W 58 -----LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL 132 (461)
T ss_dssp -----CCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred -----cCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence 455555555444323333333333 46666666665553 22344556667777777777665332222
Q ss_pred hhhh----hccCceeeccCCccCCC----CchhhcCCCCccEEEccccccccccCcccc-----CCCcccEEecCCCcCC
Q 046000 203 KGII----LQKLLYIDMANNRFEGN----LPSSIGDMKTLTFLHLSKNNFSGELSTLFT-----GCVSLWFLDRSHNNFH 269 (470)
Q Consensus 203 ~~~~----~~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~ 269 (470)
+... .++|++|++++|.+.+. ++..+..+++|+.|++++|.+.......+. ..++|++|++++|.+.
T Consensus 133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 2222 34688888888877643 245567788999999999987755443332 3569999999999988
Q ss_pred Ccc----hhhhcCcccccEEEccccccccccc-----hhhcCCCCccEEECCCCcccCC----cchhHHhhhccccEEEc
Q 046000 270 DQI----FPKYMNLTRLWFLYLDNNKFSGKIE-----DGLLKSNQLKELDMSNNMLSGH----IPHWIANFSSYLEVLLM 336 (470)
Q Consensus 270 ~~~----~~~~~~~~~L~~l~l~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~l~~L~l 336 (470)
+.. +..+..+++|+.|++++|.+.+... .....+++|+.|++++|.+.+. ++..+..... ++.|++
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~L 291 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-LKELSL 291 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT-CCEEEC
T ss_pred HHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC-cceEEC
Confidence 753 4556678999999999998875432 2233588999999999998744 4555555555 999999
Q ss_pred CCCcccCCCchhhhc-----cCCCeEEEccCccccCcccccc-----ccCcccEEEccCCcccccCccchhc-----CCC
Q 046000 337 SKNFLKGNIPMQLLN-----HGSLQLLSVSENCLSGFMTSSF-----SLSSLVHLYVQRNDLSGTIPNALFR-----SSK 401 (470)
Q Consensus 337 ~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~l~~-----~~~ 401 (470)
++|.+.+..+..+.. .++|+.|++++|.+++.....+ .+++|++|++++|.+.+..+..+.. .++
T Consensus 292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 999887544444432 3699999999999887643222 5799999999999998665554432 679
Q ss_pred ccEEEcCCcccee----ecchhhhcCCCCcEEEccCcccCcccchhhc-----cCCCCCeEEccCcccccccC
Q 046000 402 LMTLDLRDNGFSG----IISDQINESSNLRVLLLRGNYLEGPISNQFC-----QLRRLGVMDLSHNRINGSIP 465 (470)
Q Consensus 402 L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~l~l~~n~~~~~~p 465 (470)
|+.|++++|++++ .++..+..+++|++|++++|++++.....+. ....|+.|.+.++.+....+
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~ 444 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME 444 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence 9999999999986 6778888999999999999999864333332 23468889888887765443
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.8e-30 Score=257.19 Aligned_cols=264 Identities=20% Similarity=0.203 Sum_probs=167.4
Q ss_pred cccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccC
Q 046000 131 QLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKL 210 (470)
Q Consensus 131 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 210 (470)
..+++|++|++++|.+. .+++..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.
T Consensus 96 ~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-------------- 160 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-------------- 160 (597)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------
T ss_pred cCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC--------------
Confidence 34455666666666665 344444455666666666666655444334455555555555555554
Q ss_pred ceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccc
Q 046000 211 LYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN 290 (470)
Q Consensus 211 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 290 (470)
+..+..|..+++|+.|++++|.+.... +..+++|+.|++++|.+.. +...++|+.+++++|
T Consensus 161 -----------~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n 221 (597)
T 3oja_B 161 -----------RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHN 221 (597)
T ss_dssp -----------BCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSS
T ss_pred -----------CCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCC
Confidence 333334444444444444444443321 2334455555555554432 123345566666666
Q ss_pred ccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccc
Q 046000 291 KFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMT 370 (470)
Q Consensus 291 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 370 (470)
.+...... ..++|+.|++++|.+.+ +.++..++. ++.|++++|.+.+..|..+..+++|+.|++++|.+..++.
T Consensus 222 ~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 295 (597)
T 3oja_B 222 SINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPG-LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 295 (597)
T ss_dssp CCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTT-CSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC
T ss_pred cccccccc---cCCCCCEEECCCCCCCC--ChhhccCCC-CCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc
Confidence 55532221 13567777777777763 244555554 7788888888777777888888899999999998888776
Q ss_pred cccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 371 SSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 371 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
....+++|++|++++|.+. .+|..+..+++|+.|++++|++... + +..+++|+.|++++|++.+
T Consensus 296 ~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred ccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 6667889999999999988 5667778889999999999998754 2 5678899999999998875
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=2.9e-31 Score=241.13 Aligned_cols=249 Identities=25% Similarity=0.376 Sum_probs=161.1
Q ss_pred cccEEeccCCcccC--CCCcchhhhhccCceeeccC-CccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccE
Q 046000 184 FLHHLDVSSNNFTG--KLPQDKGIILQKLLYIDMAN-NRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWF 260 (470)
Q Consensus 184 ~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 260 (470)
++++|+++++.+.+ .+|..+.. +++|++|++++ |.+.+..|..|..+++|+.|++++|.+....+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----------- 118 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----------- 118 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-----------
T ss_pred eEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-----------
Confidence 45555555555554 34433322 45555555552 44444444445555555555555555444444
Q ss_pred EecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCc
Q 046000 261 LDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNF 340 (470)
Q Consensus 261 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~ 340 (470)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+..+.+.++.|++++|.
T Consensus 119 -------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 119 -------------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp -------------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred -------------HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 4444455555555555555544555555666666666666666655666665555346666666666
Q ss_pred ccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchh
Q 046000 341 LKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQ 419 (470)
Q Consensus 341 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 419 (470)
+.+..|..+..++ |+.|++++|.+....+..+ .+++|++|++++|.+.+..+. +..+++|+.|++++|++.+.+|..
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGG
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChH
Confidence 6666666666665 7777777777765555444 677888888888888755444 667788888888888888788888
Q ss_pred hhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccc
Q 046000 420 INESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460 (470)
Q Consensus 420 ~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~ 460 (470)
+..+++|++|++++|++++.+|.. ..+++|+.+++++|+.
T Consensus 264 l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp GGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred HhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 888888888888888888777776 7788888888888873
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.6e-29 Score=232.07 Aligned_cols=267 Identities=18% Similarity=0.187 Sum_probs=188.0
Q ss_pred cccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEec
Q 046000 184 FLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDR 263 (470)
Q Consensus 184 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 263 (470)
.++.|++++|.+. .++...+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+.......+ ++|++|++
T Consensus 53 ~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l 128 (330)
T 1xku_A 53 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRV 128 (330)
T ss_dssp TCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEEC
T ss_pred CCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEEC
Confidence 4445555555444 2233223335556666666665555555566666666666666666653322221 56777777
Q ss_pred CCCcCCCcchhhhcCcccccEEEcccccccc--ccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcc
Q 046000 264 SHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG--KIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFL 341 (470)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 341 (470)
++|.+.......+..+++|+.+++++|.+.. ..+..+..+++|+.|++++|.+. .+|..+. ..++.|++++|.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc---ccCCEEECCCCcC
Confidence 7777766666667777777777777776642 44556777888888888888876 4554432 4488889998888
Q ss_pred cCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhh
Q 046000 342 KGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQI 420 (470)
Q Consensus 342 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 420 (470)
.+..+..+..+++|+.|++++|.+.+.+...+ .+++|++|++++|++. .+|..+..+++|+.|++++|+++...+..+
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 87777888889999999999999888776554 7889999999999998 667778888999999999999987665555
Q ss_pred hc------CCCCcEEEccCcccCc--ccchhhccCCCCCeEEccCcc
Q 046000 421 NE------SSNLRVLLLRGNYLEG--PISNQFCQLRRLGVMDLSHNR 459 (470)
Q Consensus 421 ~~------~~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~l~l~~n~ 459 (470)
.. .+.++.+++++|++.. ..|..+..++.++.+++++|+
T Consensus 284 ~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 33 3788999999999864 567888889999999999885
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.8e-30 Score=235.74 Aligned_cols=287 Identities=18% Similarity=0.160 Sum_probs=214.1
Q ss_pred CCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEc
Q 046000 160 KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239 (470)
Q Consensus 160 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 239 (470)
+++.++++++.+.... .. ..++++.|++++|.+. .++...+..+++|++|++++|.+.+..+..|..+++|+.|++
T Consensus 34 ~l~~l~~~~~~l~~ip-~~--~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVP-KE--ISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCC-SC--CCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccC-CC--CCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4666666666655322 22 1356777777777766 333333444677777777777777666777777888888888
Q ss_pred cccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccccccc--ccchhhcCCCCccEEECCCCccc
Q 046000 240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSG--KIEDGLLKSNQLKELDMSNNMLS 317 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 317 (470)
++|.+.......+ ++|++|++++|.+.......+..+++|+.+++++|.+.. ..+..+..+ +|+.|++++|.+.
T Consensus 110 ~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 8877764433332 678888888888877666667788888888888887752 445555555 8889999999887
Q ss_pred CCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccch
Q 046000 318 GHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNAL 396 (470)
Q Consensus 318 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l 396 (470)
.+|..+. ..++.|++++|.+.+..+..+..+++|+.|++++|.+.+.+...+ .+++|++|++++|++. .+|..+
T Consensus 186 -~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 186 -GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp -SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred -ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 4555433 458899999999987777888899999999999999998887555 7899999999999998 677778
Q ss_pred hcCCCccEEEcCCccceeecchhhhc------CCCCcEEEccCcccC--cccchhhccCCCCCeEEccCcc
Q 046000 397 FRSSKLMTLDLRDNGFSGIISDQINE------SSNLRVLLLRGNYLE--GPISNQFCQLRRLGVMDLSHNR 459 (470)
Q Consensus 397 ~~~~~L~~L~l~~n~l~~~~~~~~~~------~~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~l~l~~n~ 459 (470)
..+++|+.|++++|+++...+..+.. .++|+.|++++|++. +..+..+..++.|+.+++++|+
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 89999999999999998766666654 367999999999987 5778889999999999999885
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.3e-29 Score=231.21 Aligned_cols=292 Identities=15% Similarity=0.148 Sum_probs=164.2
Q ss_pred cCceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCcc
Q 046000 13 NLEALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSY 90 (470)
Q Consensus 13 ~L~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~ 90 (470)
+++.++++++.+...+. .+++++|++++|.+.+..+.+|+++++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 113 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc
Confidence 45666666655543333 3445555555555554444455555555555555555554445555555555555555554
Q ss_pred CcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccc
Q 046000 91 FEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNS 170 (470)
Q Consensus 91 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~ 170 (470)
+. .+| ..+. ++|++|++++|.+. .++...+..+++|+.|++++|.
T Consensus 114 l~-~l~-------------------------------~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 114 LV-EIP-------------------------------PNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp CC-SCC-------------------------------SSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCC
T ss_pred CC-ccC-------------------------------cccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCc
Confidence 43 222 1111 46777777777777 5666566677788888888777
Q ss_pred cCC--ccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcccccccccc
Q 046000 171 FTG--NLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGEL 248 (470)
Q Consensus 171 i~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 248 (470)
+.. ..+..+..+ +|++|++++|.+. .+|...+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+....
T Consensus 159 l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 159 LENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred cccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 653 334445555 7777777777776 4555442 57777777777777655566677777777777777766655
Q ss_pred CccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhh
Q 046000 249 STLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS 328 (470)
Q Consensus 249 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 328 (470)
+..+..+++|++|++++|.+.. .+..+..+++|+.+++++|.+++.....+..... ....
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-------------------~~~~ 293 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGF-------------------GVKR 293 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSC-------------------CSSS
T ss_pred hhHhhCCCCCCEEECCCCcCee-cChhhhcCccCCEEECCCCCCCccChhHcccccc-------------------cccc
Confidence 5566666666666666666652 3334555556666666665555433333322100 0001
Q ss_pred ccccEEEcCCCccc--CCCchhhhccCCCeEEEccCcc
Q 046000 329 SYLEVLLMSKNFLK--GNIPMQLLNHGSLQLLSVSENC 364 (470)
Q Consensus 329 ~~l~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 364 (470)
..++.+++.+|.+. ...+..+..+++|+.+++++|+
T Consensus 294 ~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 12445555555443 3445566667777777777653
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.5e-29 Score=229.17 Aligned_cols=289 Identities=19% Similarity=0.156 Sum_probs=172.3
Q ss_pred ccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCc
Q 046000 105 KLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDF 184 (470)
Q Consensus 105 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 184 (470)
+++.++++++.+..+.. .+ .+.+++|++++|.++ .++...+..+++|++|++++|.+....+..+..+++
T Consensus 32 ~l~~l~~~~~~l~~lp~-------~~--~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK-------DL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 101 (330)
T ss_dssp ETTEEECTTSCCCSCCC-------SC--CTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTT
T ss_pred CCeEEEecCCCccccCc-------cC--CCCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCC
Confidence 56677776665442221 11 245777777777776 455544556777777777777777665666777777
Q ss_pred ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcccccccc--ccCccccCCCcccEEe
Q 046000 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSG--ELSTLFTGCVSLWFLD 262 (470)
Q Consensus 185 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~ 262 (470)
|++|++++|.+. .+|...+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|+
T Consensus 102 L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 102 LERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp CCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 777777777766 5555443 567777777777665555566667777777777666642 3344555566666666
Q ss_pred cCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCccc
Q 046000 263 RSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLK 342 (470)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 342 (470)
+++|.+..... .+ .++|+.+++++|.+.+..+..+..+++ ++.|++++|.+.
T Consensus 178 l~~n~l~~l~~-~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~-------------------------L~~L~Ls~n~l~ 229 (330)
T 1xku_A 178 IADTNITTIPQ-GL--PPSLTELHLDGNKITKVDAASLKGLNN-------------------------LAKLGLSFNSIS 229 (330)
T ss_dssp CCSSCCCSCCS-SC--CTTCSEEECTTSCCCEECTGGGTTCTT-------------------------CCEEECCSSCCC
T ss_pred CCCCccccCCc-cc--cccCCEEECCCCcCCccCHHHhcCCCC-------------------------CCEEECCCCcCc
Confidence 66665543211 11 144444444444444333344444444 555555555554
Q ss_pred CCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhc------CCCccEEEcCCcccee--
Q 046000 343 GNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFR------SSKLMTLDLRDNGFSG-- 414 (470)
Q Consensus 343 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~------~~~L~~L~l~~n~l~~-- 414 (470)
+..+..+..+++|+.|++++|.+..++.....+++|++|++++|++++..+..+.. .+.++.+++++|++..
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred eeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 44444556666777777777777666655556677777777777776555444432 3667778888887643
Q ss_pred ecchhhhcCCCCcEEEccCcc
Q 046000 415 IISDQINESSNLRVLLLRGNY 435 (470)
Q Consensus 415 ~~~~~~~~~~~L~~L~l~~n~ 435 (470)
..+..+..+++++.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 445667777788888887774
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=4.2e-31 Score=262.89 Aligned_cols=425 Identities=13% Similarity=0.078 Sum_probs=227.8
Q ss_pred cccccCCCcCceeeccCCCCC-----------Ccc---------ccccccccccccccCCCCchHhhhc-CCC-CcEEEc
Q 046000 5 GAGLHKLKNLEALDLSFNNIN-----------GTV---------ESQESFELNLAKNNIGGHLLDCLNN-MTR-LKVLDT 62 (470)
Q Consensus 5 ~~~l~~~~~L~~L~ls~~~~~-----------~~~---------~~~~L~~L~l~~~~~~~~~~~~~~~-~~~-L~~L~l 62 (470)
+..++++++|++|+++++... +.. .+++|++|++++|.+++..+..+.. ++. |++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 445667888999999875321 000 2566777777777666555555554 333 777777
Q ss_pred cCCc-ccc-ccchhhhcCcCCcEEeccCccCcCccC---hhhhccccccceecccCCCCccccccccCCCCcccccCccc
Q 046000 63 SFNQ-LSG-SLPSVIVNLASVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLK 137 (470)
Q Consensus 63 ~~~~-i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 137 (470)
++|. +.. .++.....+++|++|++++|.+.+... ......+++|++|+++.+.+.... ...+...+..+++|+
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~--~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKIS--PKDLETIARNCRSLV 223 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCC--HHHHHHHHHHCTTCC
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccC--HHHHHHHHhhCCCCc
Confidence 7665 211 122333466777777777776653321 124455667777777666543111 112222334556677
Q ss_pred EEEccCccccCccchHhhhcCCCCcEEEccccccC---CccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceee
Q 046000 138 YLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFT---GNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYID 214 (470)
Q Consensus 138 ~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 214 (470)
+|++++|.+. .++ ..+..+++|+.+++++.... ......+..+++|+.+.++++... .++. .+..+++|++|+
T Consensus 224 ~L~L~~~~~~-~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~-~~~~~~~L~~L~ 299 (592)
T 3ogk_B 224 SVKVGDFEIL-ELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPI-LFPFAAQIRKLD 299 (592)
T ss_dssp EEECSSCBGG-GGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGG-GGGGGGGCCEEE
T ss_pred EEeccCccHH-HHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHH-HHhhcCCCcEEe
Confidence 7777776665 344 33456667777776643221 112233445556666666554222 2222 223355666666
Q ss_pred ccCCccCCCCc-hhhcCCCCccEEEccccccccccCccccCCCcccEEecCC-----------CcCCCcchhhhcCcccc
Q 046000 215 MANNRFEGNLP-SSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSH-----------NNFHDQIFPKYMNLTRL 282 (470)
Q Consensus 215 l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-----------~~~~~~~~~~~~~~~~L 282 (470)
+++|.+.+... ..+..+++|+.|+++++......+.....+++|++|++++ +.+++....
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~-------- 371 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI-------- 371 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH--------
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH--------
Confidence 66655432111 2234555555555552211111122223344555555542 222221111
Q ss_pred cEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcC----CCcccCC-----CchhhhccC
Q 046000 283 WFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMS----KNFLKGN-----IPMQLLNHG 353 (470)
Q Consensus 283 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~----~~~~~~~-----~~~~~~~~~ 353 (470)
.....+++|+.|+++.+.+++.....+....+.++.|++. .+.+++. ++..+..++
T Consensus 372 ---------------~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~ 436 (592)
T 3ogk_B 372 ---------------ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK 436 (592)
T ss_dssp ---------------HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT
T ss_pred ---------------HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC
Confidence 1123345555555555555444444444423335555553 3334321 233355678
Q ss_pred CCeEEEccCcc--ccCcccccc--ccCcccEEEccCCccccc-CccchhcCCCccEEEcCCccceee-cchhhhcCCCCc
Q 046000 354 SLQLLSVSENC--LSGFMTSSF--SLSSLVHLYVQRNDLSGT-IPNALFRSSKLMTLDLRDNGFSGI-ISDQINESSNLR 427 (470)
Q Consensus 354 ~L~~L~l~~~~--l~~~~~~~~--~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~ 427 (470)
+|+.|++++|. +++...... .+++|++|++++|++++. .+..+..+++|+.|++++|++++. ++..+..+++|+
T Consensus 437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 516 (592)
T 3ogk_B 437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516 (592)
T ss_dssp TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence 88888886543 433322222 478888888888888753 334456788888888888887643 344456788888
Q ss_pred EEEccCcccCcccchhh-ccCCCCCeEEccCc
Q 046000 428 VLLLRGNYLEGPISNQF-CQLRRLGVMDLSHN 458 (470)
Q Consensus 428 ~L~l~~n~i~~~~~~~~-~~l~~L~~l~l~~n 458 (470)
+|++++|++++.....+ ..+|.+....+..+
T Consensus 517 ~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 517 YLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 88888888876544433 35676666655543
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=2.7e-31 Score=264.27 Aligned_cols=410 Identities=16% Similarity=0.052 Sum_probs=288.9
Q ss_pred CchHhhhcCCCCcEEEccCCccc---cc------------cchhhhcCcCCcEEeccCccCcCccChhhhcc-ccc-cce
Q 046000 46 HLLDCLNNMTRLKVLDTSFNQLS---GS------------LPSVIVNLASVEYLDLSNSYFEGTFPISSLAN-HSK-LKV 108 (470)
Q Consensus 46 ~~~~~~~~~~~L~~L~l~~~~i~---~~------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~-L~~ 108 (470)
..+..+..+++|++|+++++... +. ++.....+++|++|++++|.+.+..+ ..+.. +++ |++
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~-~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDL-DRLAKARADDLET 142 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH-HHHHHHHGGGCCE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHH-HHHHHhccccCcE
Confidence 34556778889999999875321 11 12223378899999999998764433 33433 445 999
Q ss_pred ecccCCCCccccccccCCCCcccccCcccEEEccCccccCccc---hHhhhcCCCCcEEEccccccCCc----cCCCCCC
Q 046000 109 LRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFP---AWILQNNTKLEVLCLTNNSFTGN----LQLPHSK 181 (470)
Q Consensus 109 L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~~L~~L~l~~~~i~~~----~~~~~~~ 181 (470)
|++++|.. .....+......+++|++|++++|.+.+... ..+...+++|+.|+++++.+... ....+..
T Consensus 143 L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 143 LKLDKCSG----FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp EEEESCEE----EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred EECcCCCC----cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 99988752 1111222223467889999999998875432 23456789999999998887622 2222346
Q ss_pred CCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccC---CCCchhhcCCCCccEEEccccccccccCccccCCCcc
Q 046000 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFE---GNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSL 258 (470)
Q Consensus 182 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 258 (470)
+++|+.|++++|.+. .++ ..+..+++|++|+++..... ......+..+++|+.++++++.. ...+..+..+++|
T Consensus 219 ~~~L~~L~L~~~~~~-~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L 295 (592)
T 3ogk_B 219 CRSLVSVKVGDFEIL-ELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQI 295 (592)
T ss_dssp CTTCCEEECSSCBGG-GGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGC
T ss_pred CCCCcEEeccCccHH-HHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCC
Confidence 788999999998887 455 34455889999999864322 23345677889999999988543 3455667788999
Q ss_pred cEEecCCCcCCCcch-hhhcCcccccEEEccccccccccchhhcCCCCccEEECCC-----------CcccCCcchhHHh
Q 046000 259 WFLDRSHNNFHDQIF-PKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSN-----------NMLSGHIPHWIAN 326 (470)
Q Consensus 259 ~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~~~~~~ 326 (470)
++|++++|.+.+... ..+..+++|+.|+++++............+++|++|++++ +.+++.....+..
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 999999999765444 3467899999999984322223334446789999999994 4555433444444
Q ss_pred hhccccEEEcCCCcccCCCchhhhc-cCCCeEEEcc----CccccCcccc------ccccCcccEEEccCCc--ccccCc
Q 046000 327 FSSYLEVLLMSKNFLKGNIPMQLLN-HGSLQLLSVS----ENCLSGFMTS------SFSLSSLVHLYVQRND--LSGTIP 393 (470)
Q Consensus 327 ~~~~l~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~l~~~~~~------~~~~~~L~~L~l~~~~--l~~~~~ 393 (470)
..+.+++|++..+.+++..+..+.. +++|+.|+++ .+.+++.+.. ...+++|++|+++.|. +++...
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 3445999999888887666666654 9999999997 5567664322 2268999999998654 555544
Q ss_pred cchh-cCCCccEEEcCCcccee-ecchhhhcCCCCcEEEccCcccCcc-cchhhccCCCCCeEEccCcccccc
Q 046000 394 NALF-RSSKLMTLDLRDNGFSG-IISDQINESSNLRVLLLRGNYLEGP-ISNQFCQLRRLGVMDLSHNRINGS 463 (470)
Q Consensus 394 ~~l~-~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~l~l~~n~~~~~ 463 (470)
..+. .+++|+.|++++|++++ .++..+.++++|++|++++|++++. ++.....+++|+.|++++|+++..
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 4443 48999999999999875 3455668899999999999998754 445567899999999999999865
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=9.9e-30 Score=231.01 Aligned_cols=250 Identities=22% Similarity=0.301 Sum_probs=202.8
Q ss_pred CCCcEEEccccccCC--ccCCCCCCCCcccEEeccC-CcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCcc
Q 046000 159 TKLEVLCLTNNSFTG--NLQLPHSKHDFLHHLDVSS-NNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLT 235 (470)
Q Consensus 159 ~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 235 (470)
.+++.|+++++.+.+ ..+..+..+++|++|++++ +.+.+.+|..+.. +++|++|++++|.+.+..|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999987 6778899999999999995 8888788877654 89999999999999888899999999999
Q ss_pred EEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCC-CccEEECCCC
Q 046000 236 FLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN-QLKELDMSNN 314 (470)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~ 314 (470)
+|++++|.+....+..+..+++|++|++++|.+....+.. +..++ +|+.|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~------------------------l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS------------------------YGSFSKLFTSMTISRN 184 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG------------------------GGCCCTTCCEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH------------------------HhhhhhcCcEEECcCC
Confidence 9999999988777777777777777777776665433333 44444 5556666666
Q ss_pred cccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCcc
Q 046000 315 MLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPN 394 (470)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 394 (470)
.+.+..|..+.... ++.|++++|.+.+..+..+..+++|+.|++++|.+....+....+++|++|++++|.+.+..|.
T Consensus 185 ~l~~~~~~~~~~l~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 185 RLTGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp EEEEECCGGGGGCC--CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred eeeccCChHHhCCc--ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh
Confidence 55555555555443 6677777777666677778888899999999999887666655789999999999999988999
Q ss_pred chhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCccc
Q 046000 395 ALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYL 436 (470)
Q Consensus 395 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i 436 (470)
.+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+.
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCC
Confidence 9999999999999999999888876 8899999999999984
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=225.88 Aligned_cols=256 Identities=21% Similarity=0.150 Sum_probs=137.1
Q ss_pred cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000 209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD 288 (470)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 288 (470)
+|++|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 45555555555544333345555555555555555554444455555555555555555554444445555555555555
Q ss_pred ccccccccc-hhhcCCCCccEEECCCCc-ccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCcccc
Q 046000 289 NNKFSGKIE-DGLLKSNQLKELDMSNNM-LSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS 366 (470)
Q Consensus 289 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 366 (470)
+|.+.+... ..+..+++|++|++++|. +.+..+..+..+.. ++.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC-CCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 555553332 244555555555555553 33222333333333 556666666555555555666666666666666665
Q ss_pred Ccccccc-ccCcccEEEccCCcccccCccch---hcCCCccEEEcCCcccee----ecchhhhcCCCCcEEEccCcccCc
Q 046000 367 GFMTSSF-SLSSLVHLYVQRNDLSGTIPNAL---FRSSKLMTLDLRDNGFSG----IISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 367 ~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l---~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
..+...+ .+++|++|++++|++.+..+..+ ...+.++.++++++.+.+ .+|+.+..+++|++|++++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 5544433 35666666666666654433222 223455566666555543 245556666677777777776663
Q ss_pred ccchhhccCCCCCeEEccCcccccccC
Q 046000 439 PISNQFCQLRRLGVMDLSHNRINGSIP 465 (470)
Q Consensus 439 ~~~~~~~~l~~L~~l~l~~n~~~~~~p 465 (470)
..+..+..+++|+.|++++|++++..|
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 333334666777777777776665544
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.96 E-value=1.8e-30 Score=258.59 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=74.3
Q ss_pred cccCCCcCceeeccCCCCC-Cc-------------------cccccccccccccccCCCCchHhhh-cCCCCcEEEccCC
Q 046000 7 GLHKLKNLEALDLSFNNIN-GT-------------------VESQESFELNLAKNNIGGHLLDCLN-NMTRLKVLDTSFN 65 (470)
Q Consensus 7 ~l~~~~~L~~L~ls~~~~~-~~-------------------~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~ 65 (470)
.+.++++|+.|+++++... +. ..+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 3556777888888776421 00 0144566666666665554444443 4566666666665
Q ss_pred -ccccc-cchhhhcCcCCcEEeccCccCcCccC---hhhhccccccceecccCCCCccccccccCCCCcccccCcccEEE
Q 046000 66 -QLSGS-LPSVIVNLASVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLD 140 (470)
Q Consensus 66 -~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 140 (470)
.+.+. .+.....+++|++|++++|.+++..+ ......+++|++|+++.+. .... ...+......+++|++|+
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~--~~~l~~l~~~~~~L~~L~ 217 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVS--FSALERLVTRCPNLKSLK 217 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCC--HHHHHHHHHHCTTCCEEE
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCC--HHHHHHHHHhCCCCcEEe
Confidence 33321 33333456666666666665443221 0112244556666665543 0000 001111122345566666
Q ss_pred ccCccccCccchHhhhcCCCCcEEEccc
Q 046000 141 LSHNNLAGDFPAWILQNNTKLEVLCLTN 168 (470)
Q Consensus 141 l~~~~i~~~~~~~~~~~~~~L~~L~l~~ 168 (470)
+++|...+.++ ..+..+++|+.|+++.
T Consensus 218 L~~~~~~~~l~-~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 218 LNRAVPLEKLA-TLLQRAPQLEELGTGG 244 (594)
T ss_dssp CCTTSCHHHHH-HHHHHCTTCSEEECSB
T ss_pred cCCCCcHHHHH-HHHhcCCcceEccccc
Confidence 65552211222 2333555555555443
No 53
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=2.6e-29 Score=250.16 Aligned_cols=423 Identities=14% Similarity=0.044 Sum_probs=234.4
Q ss_pred cccccccccccccCCCC---------------chHhhhcCCCCcEEEccCCccccccchhhh-cCcCCcEEeccCc-cCc
Q 046000 30 SQESFELNLAKNNIGGH---------------LLDCLNNMTRLKVLDTSFNQLSGSLPSVIV-NLASVEYLDLSNS-YFE 92 (470)
Q Consensus 30 ~~~L~~L~l~~~~~~~~---------------~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~-~~~ 92 (470)
+++|++|+++++..... ++.....+++|++|++++|.+.+..+..+. .+++|++|++++| .+.
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 56777888877642211 122235677888888888877766666665 6788888888887 443
Q ss_pred CccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCcc--ccCccchHhhhcCCCCcEEEcccc-
Q 046000 93 GTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNN--LAGDFPAWILQNNTKLEVLCLTNN- 169 (470)
Q Consensus 93 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~~L~~L~l~~~- 169 (470)
+.........+++|++|++++|.+..... ..+......+++|++|+++++. +.......+...+++|+.|++++|
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSG--HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCG--GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcch--HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 22222344567888888888776432211 1112223355678888888775 222222233345677888888776
Q ss_pred ccCCccCCCCCCCCcccEEeccCCcc-------cCCCCcchhhhhccCcee-eccCCccCCCCchhhcCCCCccEEEccc
Q 046000 170 SFTGNLQLPHSKHDFLHHLDVSSNNF-------TGKLPQDKGIILQKLLYI-DMANNRFEGNLPSSIGDMKTLTFLHLSK 241 (470)
Q Consensus 170 ~i~~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 241 (470)
.+.+ .+..+..+++|++|.++.+.. . .++. ....+++|+.+ .+.+... ..++..+..+++|+.|++++
T Consensus 223 ~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 223 PLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp CHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred cHHH-HHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence 2221 333344566777777655431 1 1111 22335666666 2322221 12333344567777777777
Q ss_pred ccccccc-CccccCCCcccEEecCCCcCCCcchhhh-cCcccccEEEccc---------cccccccchhh-cCCCCccEE
Q 046000 242 NNFSGEL-STLFTGCVSLWFLDRSHNNFHDQIFPKY-MNLTRLWFLYLDN---------NKFSGKIEDGL-LKSNQLKEL 309 (470)
Q Consensus 242 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~l~l~~---------~~~~~~~~~~~-~~~~~L~~L 309 (470)
|.+.... ...+..+++|+.|++++| +.+.....+ ..+++|+.|++.+ +.+++.....+ ..+++|+.|
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence 7654322 222446677777777766 333222222 2467777777733 23332222222 236777777
Q ss_pred ECCCCcccCCcchhHHhhhccccEEEcC--C----CcccC-----CCchhhhccCCCeEEEccCccccCcccccc--ccC
Q 046000 310 DMSNNMLSGHIPHWIANFSSYLEVLLMS--K----NFLKG-----NIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLS 376 (470)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~ 376 (470)
.+..+.+++.....+....+.++.|++. + +.++. .++..+..+++|+.|++++ .+++...... .++
T Consensus 378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 7666666655455554433347777776 2 23331 1122245667777777765 4433322222 266
Q ss_pred cccEEEccCCcccccCccch-hcCCCccEEEcCCccceeecch-hhhcCCCCcEEEccCcccCcccchhh-ccCCCCCeE
Q 046000 377 SLVHLYVQRNDLSGTIPNAL-FRSSKLMTLDLRDNGFSGIISD-QINESSNLRVLLLRGNYLEGPISNQF-CQLRRLGVM 453 (470)
Q Consensus 377 ~L~~L~l~~~~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~l 453 (470)
+|++|++++|++++.....+ ..+++|+.|++++|++++.... ....+++|++|++++|+++......+ ..+|.|+..
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~ 536 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVE 536 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEE
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEE
Confidence 77777777777765444444 5567777777777777433222 33456777777777777754444444 456666666
Q ss_pred EccCccc
Q 046000 454 DLSHNRI 460 (470)
Q Consensus 454 ~l~~n~~ 460 (470)
.+.++.-
T Consensus 537 ~~~~~~~ 543 (594)
T 2p1m_B 537 VIDERGA 543 (594)
T ss_dssp EECSSSC
T ss_pred EecCCCc
Confidence 6665543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.2e-27 Score=217.25 Aligned_cols=259 Identities=22% Similarity=0.207 Sum_probs=129.3
Q ss_pred cCceeeccCCccCCCCchhhcCCCCccEEEcccccccccc--CccccCCCcccEEecCCCcCCCcchhhhcCcccccEEE
Q 046000 209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGEL--STLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLY 286 (470)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 286 (470)
++++|++++|.+....+..|..+++|+.|++++|.+.... +..+..+++|++|++++|.+.. .+..+..+++|+.|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence 3444444444443222222344444444444444333211 2222233444444444444332 122233444444444
Q ss_pred ccccccccccc-hhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccC-CCchhhhccCCCeEEEccCcc
Q 046000 287 LDNNKFSGKIE-DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKG-NIPMQLLNHGSLQLLSVSENC 364 (470)
Q Consensus 287 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~ 364 (470)
+++|.+.+... ..+..+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+.+ ..|..+..+++|+.|++++|.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC-CCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 44444443222 23444555555555555544333333333333 5555555555543 345555666667777777776
Q ss_pred ccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCC-CCcEEEccCcccCcccc-
Q 046000 365 LSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESS-NLRVLLLRGNYLEGPIS- 441 (470)
Q Consensus 365 l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~- 441 (470)
+.+.++..+ .+++|++|++++|++.+..+..+..+++|+.|++++|++.+..+..+..++ +|++|++++|++.+.-.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 666544443 566777777777776655555666667777777777777666666666663 67777777777653211
Q ss_pred -hhhccCCCCCeEEccCcccccccCCCcc
Q 046000 442 -NQFCQLRRLGVMDLSHNRINGSIPSCFT 469 (470)
Q Consensus 442 -~~~~~l~~L~~l~l~~n~~~~~~p~~~~ 469 (470)
....-+...+.+.+..++++...|+.+.
T Consensus 267 ~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 267 QSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp HHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred HHHHHHHHhhhhhhccccccccCCchhhC
Confidence 1111122334445555666666665543
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=8e-27 Score=211.83 Aligned_cols=249 Identities=19% Similarity=0.182 Sum_probs=211.9
Q ss_pred ceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcc--hhhhcCcccccEEEcc
Q 046000 211 LYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQI--FPKYMNLTRLWFLYLD 288 (470)
Q Consensus 211 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~l~l~ 288 (470)
+.++++++.+. .+|..+ .++++.|++++|.+.......+..+++|++|++++|.+.... ...+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45677777766 455433 368999999999999777777899999999999999987542 4566679999999999
Q ss_pred ccccccccchhhcCCCCccEEECCCCcccCCcc-hhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC
Q 046000 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIP-HWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG 367 (470)
Q Consensus 289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 367 (470)
+|.+.. .+..+..+++|++|++++|.+.+..+ ..+..+.. ++.|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT-CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC-CCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 999884 55568899999999999999984443 35555555 9999999999988888889999999999999999976
Q ss_pred --ccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhc
Q 046000 368 --FMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFC 445 (470)
Q Consensus 368 --~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 445 (470)
.+.....+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++.+..+..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 344444789999999999999988888999999999999999999987777889999999999999999998999999
Q ss_pred cCC-CCCeEEccCccccccc
Q 046000 446 QLR-RLGVMDLSHNRINGSI 464 (470)
Q Consensus 446 ~l~-~L~~l~l~~n~~~~~~ 464 (470)
.++ +|+.|++++|++++..
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCCTTCCEEECTTCCEECSG
T ss_pred hhhccCCEEEccCCCeeccc
Confidence 985 9999999999998654
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.5e-27 Score=217.85 Aligned_cols=279 Identities=18% Similarity=0.172 Sum_probs=182.4
Q ss_pred cCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCce
Q 046000 133 KHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLY 212 (470)
Q Consensus 133 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 212 (470)
++.....+.+++.++ .+|..+. +++++|++++|.+.......+..+++|++|++++|.+.+ ++...+..+++|++
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEH 104 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCE
T ss_pred CCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCE
Confidence 345556777777777 6776442 478888888888776666667777888888888887763 33333444677778
Q ss_pred eeccCCccCCCCchhhcCCCCccEEEccccccccccC-ccccCCCcccEEecCCCc-CCCcchhhhcCcccccEEEcccc
Q 046000 213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELS-TLFTGCVSLWFLDRSHNN-FHDQIFPKYMNLTRLWFLYLDNN 290 (470)
Q Consensus 213 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~ 290 (470)
|++++|.+.+..+..+..+++|+.|++++|.+..... ..+..+++|++|++++|. +.......+..+++|+.+++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 8887777775544557777777777777777765444 456667777777777763 44444455666667777777766
Q ss_pred ccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccc
Q 046000 291 KFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMT 370 (470)
Q Consensus 291 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 370 (470)
.+.+..+..+..+++|++|++++|.+. .++..+.. .+++|+.|++++|.+.+.+.
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~------------------------~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVD------------------------VTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHH------------------------HTTTEEEEEEESCBCTTCCC
T ss_pred CcCccCHHHHhccccCCeecCCCCccc-cchhhhhh------------------------hcccccEEECCCCccccccc
Confidence 666555556666666666666666654 33333332 34455555555555444332
Q ss_pred ccc----ccCcccEEEccCCcccc----cCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccc
Q 046000 371 SSF----SLSSLVHLYVQRNDLSG----TIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPIS 441 (470)
Q Consensus 371 ~~~----~~~~L~~L~l~~~~l~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 441 (470)
... ..+.++.+++.++.+.+ .+|..+..+++|+.|++++|+++......+..+++|++|++++|++.+..+
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 222 24566777777776654 345677888899999999998885444445888899999999998876443
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4e-26 Score=217.84 Aligned_cols=248 Identities=19% Similarity=0.195 Sum_probs=164.8
Q ss_pred ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecC
Q 046000 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRS 264 (470)
Q Consensus 185 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 264 (470)
...++..+..+. .+|..+. +.++.|++++|.+....+..|..+++|+.|++++|.+....+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456677776666 6776553 577888888888876666778888888888888888877777777788888888888
Q ss_pred CCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC
Q 046000 265 HNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN 344 (470)
Q Consensus 265 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 344 (470)
+|.+.......+..+++|+.|++++|.+.......+..+++|+.|++++|...+.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~---------------------- 178 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE---------------------- 178 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT----------------------
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCc----------------------
Confidence 8877766666677777788888877777765556677777777777776443222222
Q ss_pred CchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCC
Q 046000 345 IPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESS 424 (470)
Q Consensus 345 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 424 (470)
..+..+++|+.|++++|.++.++. ...+++|++|++++|++.+..+..+..+++|+.|++++|++....+..+..++
T Consensus 179 --~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 255 (440)
T 3zyj_A 179 --GAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255 (440)
T ss_dssp --TTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCT
T ss_pred --chhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCC
Confidence 234445556666666665555442 22456666666666666655556666666666666666666655555666666
Q ss_pred CCcEEEccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000 425 NLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461 (470)
Q Consensus 425 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~ 461 (470)
+|++|+|++|+++...+..+..+++|+.|++++|++.
T Consensus 256 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 6666666666666555555666666666666666654
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.5e-26 Score=217.69 Aligned_cols=249 Identities=20% Similarity=0.186 Sum_probs=178.1
Q ss_pred ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecC
Q 046000 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRS 264 (470)
Q Consensus 185 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 264 (470)
...++.++..+. .+|..+ .+++++|++++|.+.+..+..|..+++|+.|++++|.+....+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456677776666 666654 3578888888888887777778888888888888888887777778888888888888
Q ss_pred CCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC
Q 046000 265 HNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN 344 (470)
Q Consensus 265 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 344 (470)
+|.+.......+..+++|+.|++++|.+.......+..+++|+.|++++|...+.++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~----------------------- 188 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS----------------------- 188 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------------------
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC-----------------------
Confidence 888777666667777888888888877776555667777777777777643322222
Q ss_pred CchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCC
Q 046000 345 IPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESS 424 (470)
Q Consensus 345 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 424 (470)
+..+..+++|+.|++++|.+.+++. ...+++|++|++++|.+.+..+..+..+++|+.|++++|++....+..+..++
T Consensus 189 -~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 266 (452)
T 3zyi_A 189 -EGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266 (452)
T ss_dssp -TTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred -hhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence 2234556667777777776666542 33567777777777777766667777777777777777777766667777777
Q ss_pred CCcEEEccCcccCcccchhhccCCCCCeEEccCccccc
Q 046000 425 NLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRING 462 (470)
Q Consensus 425 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~ 462 (470)
+|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 77777777777776666667777777777777777654
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.3e-26 Score=208.08 Aligned_cols=223 Identities=23% Similarity=0.212 Sum_probs=130.9
Q ss_pred cEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCC
Q 046000 186 HHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSH 265 (470)
Q Consensus 186 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 265 (470)
+.++.++..+. .+|... .+++++|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45666666655 555433 34677777777777655555666777777777777766666566666667777777776
Q ss_pred Cc-CCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC
Q 046000 266 NN-FHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN 344 (470)
Q Consensus 266 ~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 344 (470)
|. +.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~ 144 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-------------------------AL 144 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------CC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-------------------------cc
Confidence 65 55444555556666666666666665544555555556666666555554 22
Q ss_pred CchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcC
Q 046000 345 IPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINES 423 (470)
Q Consensus 345 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 423 (470)
.+..+..+++|+.|++++|.+++++...+ .+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 23334445555555555555555544433 45555556665555555555555555566666666665554444445555
Q ss_pred CCCcEEEccCcccC
Q 046000 424 SNLRVLLLRGNYLE 437 (470)
Q Consensus 424 ~~L~~L~l~~n~i~ 437 (470)
++|++|++++|++.
T Consensus 225 ~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 225 RALQYLRLNDNPWV 238 (285)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cccCEEeccCCCcc
Confidence 66666666666554
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.3e-26 Score=210.05 Aligned_cols=234 Identities=16% Similarity=0.149 Sum_probs=169.8
Q ss_pred ccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEc
Q 046000 208 QKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYL 287 (470)
Q Consensus 208 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 287 (470)
++++.|+++++.+. .+|..+..+++|+.|++++|.+. ..+..+..+++|++|++++|.+. .++..+..+++|+.|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 56777777777766 55556666777777777777666 45555666666666666666665 33445555666666666
Q ss_pred cccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC
Q 046000 288 DNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG 367 (470)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 367 (470)
++|+..+..+..+.. ..+. ..+..+.. ++.|++++|.++ .+|..+..+++|+.|++++|.+..
T Consensus 158 ~~n~~~~~~p~~~~~------~~~~---------~~~~~l~~-L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS------TDAS---------GEHQGLVN-LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEETTCCCCCSCSEE------EC-C---------CCEEESTT-CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCCCccccChhHhh------ccch---------hhhccCCC-CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 665544333332221 0000 00111333 777777777776 677778888899999999998888
Q ss_pred ccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccC
Q 046000 368 FMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQL 447 (470)
Q Consensus 368 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l 447 (470)
++.....+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.++
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L 300 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGS
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhc
Confidence 77765578899999999988888888888899999999999998888888889999999999999999988999999999
Q ss_pred CCCCeEEccCcccc
Q 046000 448 RRLGVMDLSHNRIN 461 (470)
Q Consensus 448 ~~L~~l~l~~n~~~ 461 (470)
+.|+.+++..+.+.
T Consensus 301 ~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 301 PANCIILVPPHLQA 314 (328)
T ss_dssp CTTCEEECCGGGSC
T ss_pred cCceEEeCCHHHHH
Confidence 99999998877655
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.4e-27 Score=217.44 Aligned_cols=267 Identities=17% Similarity=0.171 Sum_probs=202.5
Q ss_pred ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecC
Q 046000 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRS 264 (470)
Q Consensus 185 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 264 (470)
++..+++.+.+. ..+...+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 444455555544 3334445556788888888888887777788888888888888888875544 7788888888888
Q ss_pred CCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC
Q 046000 265 HNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN 344 (470)
Q Consensus 265 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~ 344 (470)
+|.+.... ..++|+.+++++|.+.+.... .+++|++|++++|.+.+..+..+..+.. ++.|++++|.+.+.
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCcc
Confidence 88775422 348888888888888755443 3678899999999888555556655555 88999999988766
Q ss_pred Cchhh-hccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcC
Q 046000 345 IPMQL-LNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINES 423 (470)
Q Consensus 345 ~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 423 (470)
.+..+ ..+++|++|++++|.+++++... .+++|++|++++|++.+. +..+..+++|+.|++++|++. .+|..+..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccccccc-ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 66655 46889999999999988775444 478999999999999854 444788899999999999998 467778888
Q ss_pred CCCcEEEccCcccC-cccchhhccCCCCCeEEccCc-ccccccCC
Q 046000 424 SNLRVLLLRGNYLE-GPISNQFCQLRRLGVMDLSHN-RINGSIPS 466 (470)
Q Consensus 424 ~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~l~l~~n-~~~~~~p~ 466 (470)
++|++|++++|++. +..+..+..++.|+.+++.+| .+++..|.
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 99999999999998 678888888888998888844 44444443
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.8e-26 Score=207.12 Aligned_cols=268 Identities=19% Similarity=0.195 Sum_probs=200.7
Q ss_pred CcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEcc
Q 046000 161 LEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLS 240 (470)
Q Consensus 161 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 240 (470)
-+.++.++.++... +....+++++|+++++.+. .++...+..+++|++|++++|.+.+..+..|..+++|+.|+++
T Consensus 13 ~~~~~c~~~~l~~i---p~~~~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 13 KVTTSCPQQGLQAV---PVGIPAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp SCEEECCSSCCSSC---CTTCCTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CeEEEcCcCCcccC---CcCCCCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 36778888777743 2334678999999999998 5555555668999999999999987778899999999999999
Q ss_pred ccc-cccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCC
Q 046000 241 KNN-FSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGH 319 (470)
Q Consensus 241 ~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 319 (470)
+|. +....+..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 167 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS- 167 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-
Confidence 997 777778889999999999999999998778888999999999999999987776778888889999888887752
Q ss_pred cchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhc
Q 046000 320 IPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFR 398 (470)
Q Consensus 320 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~ 398 (470)
++ +..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+.+..+..+..
T Consensus 168 ~~------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 168 VP------------------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp EC------------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred cC------------------------HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHccc
Confidence 21 2234456677777777777766644444 5677888888888877666666777
Q ss_pred CCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhcc--CCCCCeEEccCc
Q 046000 399 SSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQ--LRRLGVMDLSHN 458 (470)
Q Consensus 399 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~--l~~L~~l~l~~n 458 (470)
+++|+.|++++|++....+. ......++.+..+.+.+....|..+.+ +..++..++.+|
T Consensus 224 l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 224 LRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp CTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 88888888888887632211 111123444556677777677766654 345555555555
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=1.7e-25 Score=213.60 Aligned_cols=246 Identities=17% Similarity=0.141 Sum_probs=181.7
Q ss_pred CCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEc
Q 046000 160 KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239 (470)
Q Consensus 160 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 239 (470)
..+.++..+.++.... . .-.++++.|++++|.+. .++...+..+++|++|++++|.+....+..|.++++|+.|++
T Consensus 44 ~~~~v~c~~~~l~~iP-~--~~~~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVP-D--GISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCC-S--CCCTTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCC-C--CCCCCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 3567777777777432 2 23468999999999998 455455566899999999999999888889999999999999
Q ss_pred cccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccc-ccccccchhhcCCCCccEEECCCCcccC
Q 046000 240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN-KFSGKIEDGLLKSNQLKELDMSNNMLSG 318 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 318 (470)
++|.+....+..+..+++|++|++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 999999888888999999999999999998877778999999999999985 455445557888999999999999887
Q ss_pred CcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchh
Q 046000 319 HIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALF 397 (470)
Q Consensus 319 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~ 397 (470)
.+|. +..+.. ++.|++++|.+++..+..+..+++|+.|++++|.+..++...+ .+++|++|++++|+++...+..+.
T Consensus 199 ~~~~-~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 199 EIPN-LTPLIK-LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp SCCC-CTTCSS-CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred cccc-cCCCcc-cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 4443 233333 6666666666655555556666666666666666655555444 456666666666666555555555
Q ss_pred cCCCccEEEcCCccc
Q 046000 398 RSSKLMTLDLRDNGF 412 (470)
Q Consensus 398 ~~~~L~~L~l~~n~l 412 (470)
.+++|+.|++++|++
T Consensus 277 ~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 277 PLHHLERIHLHHNPW 291 (440)
T ss_dssp SCTTCCEEECCSSCE
T ss_pred cccCCCEEEcCCCCc
Confidence 556666666666654
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.3e-25 Score=213.34 Aligned_cols=247 Identities=21% Similarity=0.162 Sum_probs=188.3
Q ss_pred CCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEc
Q 046000 160 KLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHL 239 (470)
Q Consensus 160 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 239 (470)
....++.++.++.... . .-.++++.|++++|.+.+ ++...+..+++|++|++++|.+.+..+..|.++++|+.|++
T Consensus 55 ~~~~v~c~~~~l~~iP-~--~~~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVP-Q--GIPSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSCC-S--CCCTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCccC-C--CCCCCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 3567777777776432 2 234689999999999984 44444556999999999999999888889999999999999
Q ss_pred cccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccc-ccccccchhhcCCCCccEEECCCCcccC
Q 046000 240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN-KFSGKIEDGLLKSNQLKELDMSNNMLSG 318 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 318 (470)
++|.+....+..+..+++|++|++++|.+.......+..+++|+.|+++++ .+.......+..+++|+.|++++|.+.
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 209 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK- 209 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-
Confidence 999999888888999999999999999998877778999999999999985 555445556888999999999999887
Q ss_pred CcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchh
Q 046000 319 HIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALF 397 (470)
Q Consensus 319 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~ 397 (470)
.++. +..+.. ++.|++++|.+.+..+..+..+++|+.|++++|.+..++...+ .+++|++|++++|+++...+..+.
T Consensus 210 ~~~~-~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 210 DMPN-LTPLVG-LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp SCCC-CTTCTT-CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred cccc-cccccc-ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 3432 333333 7777777777766666666677777777777777666655544 566777777777776655555666
Q ss_pred cCCCccEEEcCCccce
Q 046000 398 RSSKLMTLDLRDNGFS 413 (470)
Q Consensus 398 ~~~~L~~L~l~~n~l~ 413 (470)
.+++|+.|++++|++.
T Consensus 288 ~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWN 303 (452)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccCCCEEEccCCCcC
Confidence 6667777777776653
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.9e-25 Score=202.71 Aligned_cols=235 Identities=16% Similarity=0.144 Sum_probs=187.5
Q ss_pred CCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEE
Q 046000 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFL 261 (470)
Q Consensus 182 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 261 (470)
..+++.|+++++.+. .+|..++. +++|++|++++|.+. .+|..+..+++|+.|++++|.+. ..+..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 467999999999998 88888776 999999999999998 78888999999999999999998 667789999999999
Q ss_pred ecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcc
Q 046000 262 DRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFL 341 (470)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 341 (470)
++++|......+..+.. . .....+..+++|++|++++|.+. .+|..+..+.. +++|++++|.+
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~N~l 218 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQN-LKSLKIRNSPL 218 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTT-CCEEEEESSCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCC-CCEEEccCCCC
Confidence 99998776655544332 0 01122445666666666666666 56666555554 77777777776
Q ss_pred cCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhh
Q 046000 342 KGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQI 420 (470)
Q Consensus 342 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 420 (470)
. .+|..+..+++|+.|++++|.+....+..+ .+++|++|++++|.+.+..|..+..+++|+.|++++|++.+.+|+.+
T Consensus 219 ~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp C-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred C-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 6 455567788888888888887665554444 78899999999998888888889999999999999999988999999
Q ss_pred hcCCCCcEEEccCcccCc
Q 046000 421 NESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 421 ~~~~~L~~L~l~~n~i~~ 438 (470)
..+++|+.+++..+.+..
T Consensus 298 ~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 298 AQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp GGSCTTCEEECCGGGSCC
T ss_pred hhccCceEEeCCHHHHHH
Confidence 999999999998886653
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.3e-24 Score=211.44 Aligned_cols=269 Identities=24% Similarity=0.273 Sum_probs=199.6
Q ss_pred CcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCcee
Q 046000 134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYI 213 (470)
Q Consensus 134 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 213 (470)
..++.|+++++.++ .+|..+. ++|+.|++++|.++.... .+++|++|++++|.+. .+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEE
Confidence 35889999999988 7776543 789999999998885333 5688999999999887 6665 36889999
Q ss_pred eccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccc
Q 046000 214 DMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFS 293 (470)
Q Consensus 214 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 293 (470)
++++|.+.+ ++. .+++|+.|++++|.+..... .+++|++|++++|.+.... ..+++|+.|++++|.+.
T Consensus 107 ~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 107 SIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLT 174 (622)
T ss_dssp EECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcC----CccCCCCEEECCCCCCC
Confidence 999998874 343 56889999999988875332 2478899999988876532 13577888888888887
Q ss_pred cccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc
Q 046000 294 GKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF 373 (470)
Q Consensus 294 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 373 (470)
... ..+++|+.|++++|.+. .++.. ...++.|++++|.++ .+|. .+++|+.|++++|.++.++ .
T Consensus 175 ~l~----~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~lp---~ 238 (622)
T 3g06_A 175 SLP----MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLP---V 238 (622)
T ss_dssp CCC----CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCCC---C
T ss_pred CCc----ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcCC---C
Confidence 533 45678888888888887 34432 234888888888876 3443 2467888888888887766 2
Q ss_pred ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCC
Q 046000 374 SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLR 448 (470)
Q Consensus 374 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 448 (470)
.+++|++|++++|.++. +|. .+++|+.|++++|++. .+|..+..+++|+.|++++|++++..+..+..++
T Consensus 239 ~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 239 LPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 35788888888888873 333 5578888888888887 5677788888888888888888877776665543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=5.1e-26 Score=207.21 Aligned_cols=243 Identities=20% Similarity=0.168 Sum_probs=201.4
Q ss_pred cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000 209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD 288 (470)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 288 (470)
.++..+++.+.+.......+..+++|+.|++++|.+....+..+..+++|++|++++|.+..... +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555666666654444556677899999999999998877889999999999999999876443 8899999999999
Q ss_pred ccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCc
Q 046000 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF 368 (470)
Q Consensus 289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 368 (470)
+|.+.+.. ..++|++|++++|.+.+..+.. ...++.|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 99987443 3489999999999998544433 23499999999999977777888999999999999999987
Q ss_pred ccccc--ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhcc
Q 046000 369 MTSSF--SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQ 446 (470)
Q Consensus 369 ~~~~~--~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 446 (470)
+...+ .+++|++|++++|.+++.. ....+++|+.|++++|++.+. +..+..+++|++|++++|+++ .+|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhc
Confidence 66554 5799999999999998652 233589999999999999965 445899999999999999999 57888999
Q ss_pred CCCCCeEEccCcccc-cccCC
Q 046000 447 LRRLGVMDLSHNRIN-GSIPS 466 (470)
Q Consensus 447 l~~L~~l~l~~n~~~-~~~p~ 466 (470)
+++|+.|++++|+++ +.+|.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHH
Confidence 999999999999998 44443
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.9e-24 Score=209.83 Aligned_cols=270 Identities=26% Similarity=0.256 Sum_probs=210.3
Q ss_pred ccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCC
Q 046000 103 HSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKH 182 (470)
Q Consensus 103 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~ 182 (470)
..+++.|+++++.+..++ ..+. ++|++|++++|.++ .+|. .+++|++|++++|.++.... .+
T Consensus 39 ~~~l~~L~ls~n~L~~lp-------~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l 100 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLP-------DCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LP 100 (622)
T ss_dssp HHCCCEEECCSSCCSCCC-------SCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CC
T ss_pred CCCCcEEEecCCCcCccC-------hhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CC
Confidence 346889999988876332 2221 67999999999988 6776 57889999999998875333 67
Q ss_pred CcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEe
Q 046000 183 DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLD 262 (470)
Q Consensus 183 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 262 (470)
++|++|++++|.+. .+|. .+++|++|++++|.+.. +|.. +++|+.|++++|.+.... . .+++|+.|+
T Consensus 101 ~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~ 167 (622)
T 3g06_A 101 PGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLP-A---LPSELCKLW 167 (622)
T ss_dssp TTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-C---CCTTCCEEE
T ss_pred CCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcC-C---ccCCCCEEE
Confidence 88999999999887 5555 36789999999998874 4443 488999999999887532 2 357889999
Q ss_pred cCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCccc
Q 046000 263 RSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLK 342 (470)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~ 342 (470)
+++|.+.... ..+++|+.|++++|.+.+... ..++|+.|++++|.+. .++.. ...++.|++++|.++
T Consensus 168 L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~-~l~~~----~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 168 AYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLT 234 (622)
T ss_dssp CCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS
T ss_pred CCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc-ccCCC----CCCCCEEEccCCccC
Confidence 9999887643 457889999999998875332 3578999999999887 55542 244899999999887
Q ss_pred CCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhc
Q 046000 343 GNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINE 422 (470)
Q Consensus 343 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 422 (470)
+ +| ..+++|+.|++++|.++.++. .+++|++|++++|+++ .+|..+..+++|+.|++++|++.+..+..+..
T Consensus 235 ~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 235 S-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred c-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 4 55 456889999999999988776 4689999999999998 66788889999999999999998877776655
Q ss_pred CC
Q 046000 423 SS 424 (470)
Q Consensus 423 ~~ 424 (470)
++
T Consensus 307 L~ 308 (622)
T 3g06_A 307 IT 308 (622)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.2e-25 Score=213.31 Aligned_cols=236 Identities=19% Similarity=0.186 Sum_probs=168.0
Q ss_pred hccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEE
Q 046000 207 LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLY 286 (470)
Q Consensus 207 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 286 (470)
+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+ +..+++|++|++++|.+.... ..++|+.|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 3466667777766665555666777777777777776654443 666677777777777654322 236777777
Q ss_pred ccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhh-ccCCCeEEEccCccc
Q 046000 287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLL-NHGSLQLLSVSENCL 365 (470)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l 365 (470)
+++|.+.+..+. .+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+++..|..+. .+++|+.|++++|.+
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 777777654433 3567788888888777655666655555 77888888877766666665 678888888888888
Q ss_pred cCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC-cccchhh
Q 046000 366 SGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE-GPISNQF 444 (470)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~ 444 (470)
++.+... .+++|++|++++|.+++..+ .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +..|..+
T Consensus 182 ~~~~~~~-~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 182 YDVKGQV-VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp CEEECCC-CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred ccccccc-cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 7765433 47888888888888885444 47788888888888888884 5666788888888888888887 5667777
Q ss_pred ccCCCCCeEEcc
Q 046000 445 CQLRRLGVMDLS 456 (470)
Q Consensus 445 ~~l~~L~~l~l~ 456 (470)
..++.|+.+++.
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 777777777775
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.5e-26 Score=208.68 Aligned_cols=248 Identities=17% Similarity=0.102 Sum_probs=176.0
Q ss_pred CCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccC-CCCchhhc-------CCCCccEEEccccccccccCccc
Q 046000 181 KHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFE-GNLPSSIG-------DMKTLTFLHLSKNNFSGELSTLF 252 (470)
Q Consensus 181 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~ 252 (470)
..++|+.+++++|.+ .+|..+.. .|+.|++++|.+. ...+..+. .+++|++|++++|.+....+..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 456788899999988 67766654 3888899998884 34555444 78999999999999987766655
Q ss_pred --cCCCcccEEecCCCcCCCcchhhhcCc-----ccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHH
Q 046000 253 --TGCVSLWFLDRSHNNFHDQIFPKYMNL-----TRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIA 325 (470)
Q Consensus 253 --~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 325 (470)
..+++|++|++++|.+... +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+..+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--- 191 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL--- 191 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH---
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH---
Confidence 7889999999999988776 4555555 8888888888888877777788888888888888876532111
Q ss_pred hhhccccEEEcCCCcccCCCchh--hhccCCCeEEEccCccccCccc---ccc-ccCcccEEEccCCcccccCc-cchhc
Q 046000 326 NFSSYLEVLLMSKNFLKGNIPMQ--LLNHGSLQLLSVSENCLSGFMT---SSF-SLSSLVHLYVQRNDLSGTIP-NALFR 398 (470)
Q Consensus 326 ~~~~~l~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~---~~~-~~~~L~~L~l~~~~l~~~~~-~~l~~ 398 (470)
+.. +..+++|++|++++|.+..++. ..+ .+++|++|++++|++.+..+ ..+..
T Consensus 192 --------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 192 --------------------ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp --------------------HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred --------------------HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 111 1345667777777776664332 221 45677777777777765543 34455
Q ss_pred CCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccccc
Q 046000 399 SSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRING 462 (470)
Q Consensus 399 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~ 462 (470)
+++|+.|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 677777777777777 4555444 7777888888877754 54 7777788888888887774
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.1e-25 Score=202.61 Aligned_cols=251 Identities=20% Similarity=0.175 Sum_probs=177.9
Q ss_pred hcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCccc-CCCCcchh------hhhccCceeeccCCccCCCCchhh
Q 046000 156 QNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFT-GKLPQDKG------IILQKLLYIDMANNRFEGNLPSSI 228 (470)
Q Consensus 156 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~l 228 (470)
...++|+.+++++|.+ ..+..+.. .++.|+++++.+. ..++.... ..+++|++|++++|.+.+..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3456788888888887 22332222 3899999999884 34554433 137899999999999998788776
Q ss_pred --cCCCCccEEEccccccccccCccccCC-----CcccEEecCCCcCCCcchhhhcCcccccEEEccccccccc--cchh
Q 046000 229 --GDMKTLTFLHLSKNNFSGELSTLFTGC-----VSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGK--IEDG 299 (470)
Q Consensus 229 --~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~ 299 (470)
..+++|+.|++++|.+... +..+..+ ++|++|++++|.+....+..++.+++|+.|++++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 8999999999999999876 6666665 8999999999999988888999999999999999987643 2223
Q ss_pred h--cCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccc-ccc-cc
Q 046000 300 L--LKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMT-SSF-SL 375 (470)
Q Consensus 300 ~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~-~~ 375 (470)
+ ..+++|++|++++|.+. .++.... ..+..+++|+.|++++|.+.+.++ ..+ .+
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~-~~~~~~~---------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGME-TPSGVCS---------------------ALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCC-CHHHHHH---------------------HHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred HHhccCCCCCEEECCCCcCc-chHHHHH---------------------HHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 3 77899999999999876 2222111 112334566666666666655442 222 45
Q ss_pred CcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 376 SSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 376 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 67777777777776 4444443 6777777777777654 44 6677777777777777764
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.5e-24 Score=208.76 Aligned_cols=222 Identities=21% Similarity=0.155 Sum_probs=190.1
Q ss_pred CCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEE
Q 046000 230 DMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKEL 309 (470)
Q Consensus 230 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 309 (470)
.+++|+.|++++|.+....+..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.+..+ .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34589999999999998888899999999999999999876543 8899999999999999885432 3899999
Q ss_pred ECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc--ccCcccEEEccCCc
Q 046000 310 DMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF--SLSSLVHLYVQRND 387 (470)
Q Consensus 310 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~ 387 (470)
++++|.+.+..+.. + +.++.|++++|.+++..|..+..+++|+.|++++|.+.+.++..+ .+++|++|++++|.
T Consensus 105 ~L~~N~l~~~~~~~---l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEECC---C-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCccc---c-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 99999998555442 2 349999999999998888889999999999999999998766554 58999999999999
Q ss_pred ccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccc-cccCC
Q 046000 388 LSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN-GSIPS 466 (470)
Q Consensus 388 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~-~~~p~ 466 (470)
+++..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|+++ +.+|.
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 986633 3358999999999999996544 48999999999999999994 7888999999999999999998 44443
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=5.4e-23 Score=183.59 Aligned_cols=220 Identities=20% Similarity=0.199 Sum_probs=132.5
Q ss_pred eeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccccc
Q 046000 213 IDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKF 292 (470)
Q Consensus 213 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 292 (470)
.+..+..+. .+|..+. ++++.|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344444444 3444432 5688888888888877777788888888888888888776666777788888888888887
Q ss_pred ccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCC-CchhhhccCCCeEEEccCccccCcccc
Q 046000 293 SGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGN-IPMQLLNHGSLQLLSVSENCLSGFMTS 371 (470)
Q Consensus 293 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~ 371 (470)
.+..+..+..+++|++|++++|.+.+..+..+..+.. +++|++++|.+.+. +|..+..+++|++|++++|.+++++..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT-CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCC-CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 7666667777788888888887776433333333333 55666666655432 355555555555555555555554433
Q ss_pred cc-ccCccc----EEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000 372 SF-SLSSLV----HLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE 437 (470)
Q Consensus 372 ~~-~~~~L~----~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~ 437 (470)
.+ .+++|+ +|++++|.+.+..+..+. ..+|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 33 233333 455555555533333222 234555555555555444444455555555555555554
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1e-22 Score=181.70 Aligned_cols=205 Identities=19% Similarity=0.173 Sum_probs=142.9
Q ss_pred cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000 209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD 288 (470)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 288 (470)
.+++|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56666666666654444456666666666666666665555556666666666666666665555556666666666666
Q ss_pred ccccccccchhhcCCCCccEEECCCCcccC-CcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCe----EEEccCc
Q 046000 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSG-HIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQ----LLSVSEN 363 (470)
Q Consensus 289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~~ 363 (470)
+|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+.. ++.|++++|.+++..+..+..++.|+ .|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT-CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC-CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 666665444456666777777777777653 24566665555 77777777777655555565555555 8999999
Q ss_pred cccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCcccee
Q 046000 364 CLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSG 414 (470)
Q Consensus 364 ~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 414 (470)
.+..++...+...+|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 999888877777799999999999987766777889999999999999874
No 75
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=7e-24 Score=198.91 Aligned_cols=241 Identities=20% Similarity=0.182 Sum_probs=149.0
Q ss_pred CchhhcCCCCccEEEccccccccccC----ccccCCCcccEEecCCCcCCC---cchh-------hhcCcccccEEEccc
Q 046000 224 LPSSIGDMKTLTFLHLSKNNFSGELS----TLFTGCVSLWFLDRSHNNFHD---QIFP-------KYMNLTRLWFLYLDN 289 (470)
Q Consensus 224 ~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~---~~~~-------~~~~~~~L~~l~l~~ 289 (470)
++..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+.. ..+. .+..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 33444455555555555555543322 224455566666665543321 1121 234566677777777
Q ss_pred ccccc----ccchhhcCCCCccEEECCCCcccCCcchhHHhhh------------ccccEEEcCCCccc-CCCc---hhh
Q 046000 290 NKFSG----KIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFS------------SYLEVLLMSKNFLK-GNIP---MQL 349 (470)
Q Consensus 290 ~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~------------~~l~~L~l~~~~~~-~~~~---~~~ 349 (470)
|.+.+ ..+..+..+++|+.|++++|.+.+..+..+.... +.++.|++++|.++ ..++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 66664 2344556677777777777776533333333321 33777777777765 2333 355
Q ss_pred hccCCCeEEEccCccccCc-----cc-cccccCcccEEEccCCccc----ccCccchhcCCCccEEEcCCccceee----
Q 046000 350 LNHGSLQLLSVSENCLSGF-----MT-SSFSLSSLVHLYVQRNDLS----GTIPNALFRSSKLMTLDLRDNGFSGI---- 415 (470)
Q Consensus 350 ~~~~~L~~L~l~~~~l~~~-----~~-~~~~~~~L~~L~l~~~~l~----~~~~~~l~~~~~L~~L~l~~n~l~~~---- 415 (470)
..+++|++|++++|.+.+. .+ ....+++|++|++++|.++ ..++..+..+++|+.|++++|++.+.
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 6777888888888877632 12 2236778888888888875 34566677778888888888887654
Q ss_pred cchhhhc--CCCCcEEEccCcccCc----ccchhh-ccCCCCCeEEccCccccccc
Q 046000 416 ISDQINE--SSNLRVLLLRGNYLEG----PISNQF-CQLRRLGVMDLSHNRINGSI 464 (470)
Q Consensus 416 ~~~~~~~--~~~L~~L~l~~n~i~~----~~~~~~-~~l~~L~~l~l~~n~~~~~~ 464 (470)
++..+.. +++|++|++++|++++ .++..+ .++++|+.|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 3455533 7888888888888876 466666 55788888888888887554
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.3e-23 Score=195.11 Aligned_cols=253 Identities=17% Similarity=0.101 Sum_probs=166.8
Q ss_pred EeccCCcccCCCCcchhhhhccCceeeccCCccCCCCc----hhhcCCC-CccEEEccccccccccCccccCC-----Cc
Q 046000 188 LDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLP----SSIGDMK-TLTFLHLSKNNFSGELSTLFTGC-----VS 257 (470)
Q Consensus 188 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 257 (470)
..++.+.+.+.+|.. ....+.|++|++++|.+.+..+ ..+..++ +|+.|++++|.+....+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 456677666444433 2324458888888888876655 6677787 78888888888876655555543 78
Q ss_pred ccEEecCCCcCCCcchhhhc----Cc-ccccEEEccccccccccchhh----cC-CCCccEEECCCCcccCCcchhH---
Q 046000 258 LWFLDRSHNNFHDQIFPKYM----NL-TRLWFLYLDNNKFSGKIEDGL----LK-SNQLKELDMSNNMLSGHIPHWI--- 324 (470)
Q Consensus 258 L~~L~l~~~~~~~~~~~~~~----~~-~~L~~l~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~~~~~--- 324 (470)
|++|++++|.+.+.....+. .+ ++|+.|++++|.+.+.....+ .. .++|++|++++|.+.+.....+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 88888888888765555433 33 788888888888775554433 23 3588888888888775444433
Q ss_pred -HhhhccccEEEcCCCcccCCCchhhh----cc-CCCeEEEccCccccCccccc-----cc-cCcccEEEccCCcccccC
Q 046000 325 -ANFSSYLEVLLMSKNFLKGNIPMQLL----NH-GSLQLLSVSENCLSGFMTSS-----FS-LSSLVHLYVQRNDLSGTI 392 (470)
Q Consensus 325 -~~~~~~l~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~l~~~~~~~-----~~-~~~L~~L~l~~~~l~~~~ 392 (470)
......+++|++++|.+++..+..+. .+ ++|++|++++|.+.+.+... .. .++|++|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33333588888888887755554333 34 57888888888877633322 12 357888888888877554
Q ss_pred c----cchhcCCCccEEEcCCccceee-------cchhhhcCCCCcEEEccCcccCcccc
Q 046000 393 P----NALFRSSKLMTLDLRDNGFSGI-------ISDQINESSNLRVLLLRGNYLEGPIS 441 (470)
Q Consensus 393 ~----~~l~~~~~L~~L~l~~n~l~~~-------~~~~~~~~~~L~~L~l~~n~i~~~~~ 441 (470)
+ ..+..+++|+.|++++|.+... ++..+..+++|++|++++|++....+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 4 2345567788888888874322 22345566778888888888775433
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.1e-23 Score=182.52 Aligned_cols=223 Identities=16% Similarity=0.202 Sum_probs=124.0
Q ss_pred ccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEc
Q 046000 208 QKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYL 287 (470)
Q Consensus 208 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 287 (470)
.++..+.+.++.+.+. .....+++|+.|+++++.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 3555566666655432 2355677888888888876632 2366677788888887777652 35666777777777
Q ss_pred cccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccC
Q 046000 288 DNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSG 367 (470)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 367 (470)
++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------------~~~~~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-------------------------GVFDKLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-------------------------TTTTTCTTCCEEECCSSCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCH-------------------------HHhccCCCCCEEECCCCccCc
Confidence 7777665555556666667777776666653333 333444445555555554444
Q ss_pred cccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhcc
Q 046000 368 FMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQ 446 (470)
Q Consensus 368 ~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~ 446 (470)
++...+ .+++|++|++++|++++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++.+ .
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~ 220 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------T 220 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------C
T ss_pred cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------c
Confidence 444333 34455555555555544444444445555555555555554444444455555555555554432 2
Q ss_pred CCCCCeEEccCcccccccCCCc
Q 046000 447 LRRLGVMDLSHNRINGSIPSCF 468 (470)
Q Consensus 447 l~~L~~l~l~~n~~~~~~p~~~ 468 (470)
++.|+.++++.|.+++.+|..+
T Consensus 221 ~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 221 CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TTTTHHHHHHHHHTGGGBBCTT
T ss_pred CcHHHHHHHHHHhCCCcccCcc
Confidence 3344455555555555555443
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=4.3e-22 Score=176.92 Aligned_cols=202 Identities=22% Similarity=0.224 Sum_probs=140.2
Q ss_pred CccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECC
Q 046000 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMS 312 (470)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 312 (470)
..+.++++++.++... ..+ .+++++|++++|.+.......+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIP-SNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCC-SCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccC-CCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4677888888777433 222 2578888888888877666677788888888888888876656666778888888888
Q ss_pred CCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCccccc
Q 046000 313 NNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGT 391 (470)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~ 391 (470)
+|.+.+..+..+..+.. +++|++++|.+++..+..+..+++|++|++++|.+..++...+ .+++|++|++++|.+...
T Consensus 94 ~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVN-LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSS-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccC-CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 88877433333344443 7777777777765555666677777777777777776666544 567777777777777655
Q ss_pred CccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 392 IPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 392 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
.+..+..+++|+.|++++|++....+..+..+++|+.|++++|++..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 55566667777777777777765555556667777777777777653
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=3.4e-23 Score=190.72 Aligned_cols=254 Identities=17% Similarity=0.166 Sum_probs=129.2
Q ss_pred cccEEeccCCcccCCCCcchhhhh--ccCceeeccCCccCCCCchhhcCCCCccEEEccccccccc-cCccccCCCcccE
Q 046000 184 FLHHLDVSSNNFTGKLPQDKGIIL--QKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE-LSTLFTGCVSLWF 260 (470)
Q Consensus 184 ~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 260 (470)
.++.++++++.+. ......+ +.++.++++++.+.+..+. +..+++|+.|++++|.+... .+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3677777776554 2222224 6777777777777654443 44567777777777766543 4455566667777
Q ss_pred EecCCCcCCCcchhhhcCcccccEEEcccc-ccccc-cchhhcCCCCccEEECCCC-cccCC-cchhHHhhhccccEEEc
Q 046000 261 LDRSHNNFHDQIFPKYMNLTRLWFLYLDNN-KFSGK-IEDGLLKSNQLKELDMSNN-MLSGH-IPHWIANFSSYLEVLLM 336 (470)
Q Consensus 261 L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~~l~~L~l 336 (470)
|++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+.+. ++..+..++..+++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 777766665555555556666666666666 34431 3333455566666666666 55422 23333333312445555
Q ss_pred CCCc--cc-CCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCc-ccccCccchhcCCCccEEEcCCcc-
Q 046000 337 SKNF--LK-GNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRND-LSGTIPNALFRSSKLMTLDLRDNG- 411 (470)
Q Consensus 337 ~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~n~- 411 (470)
++|. ++ +.++..+.. +++|++|++++|. +++..+..+..+++|+.|++++|.
T Consensus 203 ~~~~~~~~~~~l~~~~~~-----------------------~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 259 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRR-----------------------CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD 259 (336)
T ss_dssp CSCGGGSCHHHHHHHHHH-----------------------CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred CCCcccCCHHHHHHHHhh-----------------------CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence 4442 22 122333334 4555555555555 343444444555555555555553
Q ss_pred ceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccCCCc
Q 046000 412 FSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIPSCF 468 (470)
Q Consensus 412 l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p~~~ 468 (470)
+.......+..+++|++|++++| +.......+. ..++.|++++|++++..|..+
T Consensus 260 ~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 260 IIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSC
T ss_pred CCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcc
Confidence 22111123445555555555555 3322222221 123334455555555555443
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=8.9e-22 Score=176.21 Aligned_cols=203 Identities=25% Similarity=0.181 Sum_probs=154.4
Q ss_pred hcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCcc
Q 046000 228 IGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLK 307 (470)
Q Consensus 228 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 307 (470)
+..+++++.++++++.+....... .++++.|++++|.+.......+..+++|+.|++++|.+.+.... ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 567788999999998887544332 26788999999988877777888889999999999888754332 6778888
Q ss_pred EEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCC
Q 046000 308 ELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRN 386 (470)
Q Consensus 308 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~ 386 (470)
.|++++|.+. .+|..+..+.. ++.|++++|.+++..+..+..+++|+.|++++|.+..++...+ .+++|++|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~-L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPA-LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTT-CCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCC-CCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 8888888887 66666655555 7888888888776666677778888888888888877777665 6778888888888
Q ss_pred cccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 387 DLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 387 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
+++...+..+..+++|+.|++++|++. .+|..+..+++|+.+++++|++..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 887665566677788888888888877 456666667778888888887753
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.6e-21 Score=173.14 Aligned_cols=201 Identities=22% Similarity=0.230 Sum_probs=164.2
Q ss_pred cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000 209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD 288 (470)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 288 (470)
..+.++++++.+. .+|..+. ++++.|++++|.+....+..+..+++|++|++++|.+.......|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 5678888888887 4555443 678999999998887777788889999999999998887666677888999999999
Q ss_pred ccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCc
Q 046000 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF 368 (470)
Q Consensus 289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 368 (470)
+|.+.+..+..+..+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+.+..+..+..+++|+.|++++|.+..+
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcC-CCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 99888776777788899999999999888555555555555 99999999988866666678889999999999998888
Q ss_pred ccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce
Q 046000 369 MTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS 413 (470)
Q Consensus 369 ~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 413 (470)
+...+ .+++|++|++++|++.+..+..+..+++|+.|++++|++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 87665 6889999999999988766677888899999999999875
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.7e-22 Score=179.56 Aligned_cols=229 Identities=19% Similarity=0.160 Sum_probs=178.3
Q ss_pred CCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEE
Q 046000 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFL 261 (470)
Q Consensus 182 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 261 (470)
+..+..+.+..+.+.+.. ....+++|+.|++.++.+.. . ..+..+++|+.|++++|.+... ..+..+++|++|
T Consensus 18 ~~~l~~l~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 90 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV---TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE---CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEE
T ss_pred HHHHHHHHhcCccccccc---ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEE
Confidence 445556667666655332 23347899999999999873 2 4588999999999999998753 468889999999
Q ss_pred ecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcc
Q 046000 262 DRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFL 341 (470)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~ 341 (470)
++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.
T Consensus 91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------------- 148 (272)
T 3rfs_A 91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL---------------------- 148 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC----------------------
T ss_pred ECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCcc----------------------
Confidence 9999999987777789999999999999999977777788888899998888877622
Q ss_pred cCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhh
Q 046000 342 KGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQI 420 (470)
Q Consensus 342 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 420 (470)
.+..+..+++|+.|++++|.+++++...+ .+++|++|++++|++.+..+..+..+++|+.|++++|++..
T Consensus 149 ---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------ 219 (272)
T 3rfs_A 149 ---PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------ 219 (272)
T ss_dssp ---CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------
T ss_pred ---CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------
Confidence 22334556777777777777777766654 57888888888888887767777788888888888887763
Q ss_pred hcCCCCcEEEccCcccCcccchhhccCCC
Q 046000 421 NESSNLRVLLLRGNYLEGPISNQFCQLRR 449 (470)
Q Consensus 421 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~ 449 (470)
.+++|+.++++.|.+.+.+|..++.++.
T Consensus 220 -~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 -TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp -CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred -cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 3667888888888888888887777654
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.3e-23 Score=193.35 Aligned_cols=254 Identities=19% Similarity=0.167 Sum_probs=167.0
Q ss_pred EEccccccCCccCCCCCCCCcccEEeccCCcccCCCCc---chhhhhc-cCceeeccCCccCCCCchhhcCC-----CCc
Q 046000 164 LCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQ---DKGIILQ-KLLYIDMANNRFEGNLPSSIGDM-----KTL 234 (470)
Q Consensus 164 L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L 234 (470)
+.++++++++..+..+...++|++|++++|.+.+..+. ..+..++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 45666666655555555566688888888887743331 2333355 78888888888876666665554 788
Q ss_pred cEEEccccccccccCcc----ccCC-CcccEEecCCCcCCCcchhhhc----C-cccccEEEccccccccccc----hhh
Q 046000 235 TFLHLSKNNFSGELSTL----FTGC-VSLWFLDRSHNNFHDQIFPKYM----N-LTRLWFLYLDNNKFSGKIE----DGL 300 (470)
Q Consensus 235 ~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~~----~-~~~L~~l~l~~~~~~~~~~----~~~ 300 (470)
+.|++++|.+....+.. +..+ ++|++|++++|.+.+.....+. . .++|++|++++|.+.+... ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888877555443 3334 6888888888887765554433 3 3588888888887774333 233
Q ss_pred cCCC-CccEEECCCCcccCCcchhHHhh----hccccEEEcCCCcccCC----Cchhhhc-cCCCeEEEccCccccCccc
Q 046000 301 LKSN-QLKELDMSNNMLSGHIPHWIANF----SSYLEVLLMSKNFLKGN----IPMQLLN-HGSLQLLSVSENCLSGFMT 370 (470)
Q Consensus 301 ~~~~-~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~l~~~~~ 370 (470)
...+ +|++|++++|.+.+..+..++.. +..++.|++++|.+.+. ++..+.. .++|++|++++|.+++.+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 78888888888876666555443 23488888888887643 3444444 4588888888888877654
Q ss_pred ccc-----ccCcccEEEccCCcccccC-------ccchhcCCCccEEEcCCccceeecc
Q 046000 371 SSF-----SLSSLVHLYVQRNDLSGTI-------PNALFRSSKLMTLDLRDNGFSGIIS 417 (470)
Q Consensus 371 ~~~-----~~~~L~~L~l~~~~l~~~~-------~~~l~~~~~L~~L~l~~n~l~~~~~ 417 (470)
..+ .+++|++|++++|.+.+.. +..+..+++|+.||+++|++....+
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 221 5678888888888744332 2345566778888888888765433
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=2.6e-21 Score=173.15 Aligned_cols=200 Identities=25% Similarity=0.205 Sum_probs=169.7
Q ss_pred hhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEE
Q 046000 206 ILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFL 285 (470)
Q Consensus 206 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 285 (470)
.+++++.++++++.+. .+|..+. +.++.|++++|.+....+..+..+++|++|++++|.+..... ...+++|+.|
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEE
T ss_pred ccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEE
Confidence 3678999999999888 4555443 689999999999988888889999999999999999876433 3688999999
Q ss_pred EccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccc
Q 046000 286 YLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCL 365 (470)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 365 (470)
++++|.+. ..+..+..+++|+.|++++|.+.+..+..+..+.. ++.|++++|.+....+..+..+++|+.|++++|++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCC-CCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 99999988 45667788999999999999998555566666666 99999999999876677788899999999999999
Q ss_pred cCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce
Q 046000 366 SGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS 413 (470)
Q Consensus 366 ~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 413 (470)
+.++...+ .+++|++|++++|++. .+|..+...++|+.+++++|++.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 99988776 6899999999999998 66777777889999999999875
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5.2e-22 Score=182.74 Aligned_cols=200 Identities=18% Similarity=0.167 Sum_probs=156.6
Q ss_pred CCCcEEEccccccCCccCCCCCCC--CcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCC-CchhhcCCCCcc
Q 046000 159 TKLEVLCLTNNSFTGNLQLPHSKH--DFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGN-LPSSIGDMKTLT 235 (470)
Q Consensus 159 ~~L~~L~l~~~~i~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~ 235 (470)
..++.++++++.+. +..+..+ ++++.++++++.+.+..+. .+ .+++|++|++++|.+.+. .+..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~-~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hc-cCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 44789999988766 3334444 7899999999998865554 33 389999999999998754 677789999999
Q ss_pred EEEccccccccccCccccCCCcccEEecCCC-cCCCc-chhhhcCcccccEEEcccc-ccccc-cchhhcCCC-CccEEE
Q 046000 236 FLHLSKNNFSGELSTLFTGCVSLWFLDRSHN-NFHDQ-IFPKYMNLTRLWFLYLDNN-KFSGK-IEDGLLKSN-QLKELD 310 (470)
Q Consensus 236 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~l~l~~~-~~~~~-~~~~~~~~~-~L~~L~ 310 (470)
.|++++|.+....+..+..+++|++|++++| .+.+. ....+..+++|+.|++++| .+++. .+..+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 9999999988777778888999999999999 56653 4455778999999999999 88754 456678889 999999
Q ss_pred CCCCc--cc-CCcchhHHhhhccccEEEcCCCc-ccCCCchhhhccCCCeEEEccCcc
Q 046000 311 MSNNM--LS-GHIPHWIANFSSYLEVLLMSKNF-LKGNIPMQLLNHGSLQLLSVSENC 364 (470)
Q Consensus 311 l~~~~--~~-~~~~~~~~~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~ 364 (470)
+++|. +. +.++..+..++. ++.|++++|. +++..+..+..+++|+.|++++|.
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPN-LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTT-CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred eCCCcccCCHHHHHHHHhhCCC-CCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 99994 44 345555555555 9999999998 665566666666777777776664
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=6.6e-23 Score=192.28 Aligned_cols=250 Identities=19% Similarity=0.203 Sum_probs=170.1
Q ss_pred hccCceeeccCCccCCCCc----hhhcCCCCccEEEccccccc---cccCc-------cccCCCcccEEecCCCcCCCc-
Q 046000 207 LQKLLYIDMANNRFEGNLP----SSIGDMKTLTFLHLSKNNFS---GELST-------LFTGCVSLWFLDRSHNNFHDQ- 271 (470)
Q Consensus 207 ~~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~---~~~~~-------~~~~l~~L~~L~l~~~~~~~~- 271 (470)
++.|++|++++|.+....+ ..+..+++|+.|++++|.+. ...+. .+..+++|++|++++|.+...
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 5667777777776654322 23556777777777775433 22222 235677888888888887763
Q ss_pred ---chhhhcCcccccEEEccccccccccchhh----cCC---------CCccEEECCCCcccC-Ccc---hhHHhhhccc
Q 046000 272 ---IFPKYMNLTRLWFLYLDNNKFSGKIEDGL----LKS---------NQLKELDMSNNMLSG-HIP---HWIANFSSYL 331 (470)
Q Consensus 272 ---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~----~~~---------~~L~~L~l~~~~~~~-~~~---~~~~~~~~~l 331 (470)
.+..+..+++|+.|++++|.+....+..+ ..+ ++|++|++++|.+.. .++ ..+.... .+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L 189 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR-LL 189 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT-TC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC-Cc
Confidence 44456677888888888887764333322 233 788999999988862 333 2333444 48
Q ss_pred cEEEcCCCcccC-----CCchhhhccCCCeEEEccCcccc-----CccccccccCcccEEEccCCccccc----Cccchh
Q 046000 332 EVLLMSKNFLKG-----NIPMQLLNHGSLQLLSVSENCLS-----GFMTSSFSLSSLVHLYVQRNDLSGT----IPNALF 397 (470)
Q Consensus 332 ~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~ 397 (470)
+.|++++|.++. ..+..+..+++|+.|++++|.++ .++.....+++|++|++++|.+++. ++..+.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~ 269 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh
Confidence 899999988762 23336778999999999999984 3333333789999999999999865 345554
Q ss_pred c--CCCccEEEcCCcccee----ecchhh-hcCCCCcEEEccCcccCcccc--hhh-ccCCCCCeEEccC
Q 046000 398 R--SSKLMTLDLRDNGFSG----IISDQI-NESSNLRVLLLRGNYLEGPIS--NQF-CQLRRLGVMDLSH 457 (470)
Q Consensus 398 ~--~~~L~~L~l~~n~l~~----~~~~~~-~~~~~L~~L~l~~n~i~~~~~--~~~-~~l~~L~~l~l~~ 457 (470)
. +++|+.|++++|++.. .++..+ .++++|++|++++|++++..+ ..+ ..++.++..++..
T Consensus 270 ~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred hccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 3 8999999999999987 366666 668999999999999987663 222 2244444555443
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=8.2e-21 Score=171.74 Aligned_cols=211 Identities=22% Similarity=0.272 Sum_probs=153.0
Q ss_pred CceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccc
Q 046000 210 LLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN 289 (470)
Q Consensus 210 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 289 (470)
+....+..+.+.+. ..+..+++|+.|+++++.+.... .+..+++|++|++++|.+.+... +..+++|+.|++++
T Consensus 21 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 21 AIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG 94 (308)
T ss_dssp HHHHHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred HHHHHhCCCCcCce--ecHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccC
Confidence 33444555544432 23456788999999999887542 57788999999999998877544 88889999999999
Q ss_pred cccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcc
Q 046000 290 NKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFM 369 (470)
Q Consensus 290 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 369 (470)
|.+.+. ..+..+++|+.|++++|.+.+ ++. +..+.. ++.|++++|.+++..+ +..+++|+.|++++|.+.+++
T Consensus 95 n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~-L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 95 NPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSN-LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp CCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTT-CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred CcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCC-CCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh
Confidence 988753 357788889999999988873 333 444444 8888888887764332 667788888888888877766
Q ss_pred ccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 370 TSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 370 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
. ...+++|++|++++|.+.+..+ +..+++|+.|++++|++.+.. .+..+++|++|++++|++++
T Consensus 168 ~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 168 P-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred h-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 5 3367788888888888775433 667788888888888877543 26777888888888888764
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=1.8e-20 Score=164.50 Aligned_cols=179 Identities=17% Similarity=0.150 Sum_probs=119.4
Q ss_pred cccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEc
Q 046000 257 SLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLM 336 (470)
Q Consensus 257 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l 336 (470)
..+.++++++.+.... ..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+.. ++.|++
T Consensus 15 ~~~~l~~~~~~l~~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE-LGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT-CCEEEC
T ss_pred CCeEEecCCCCccccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCc-CCEEEC
Confidence 4567777777765432 2222 56777888877777666666777777777777777777544444555444 777777
Q ss_pred CCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceee
Q 046000 337 SKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGI 415 (470)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 415 (470)
++|.+++..+..+..+++|++|++++|.++.++...+ .+++|++|++++|++.+..+..+..+++|+.|++++|++.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 7777765555566667777777777777776666554 566777777777777655555666667777777777777655
Q ss_pred cchhhhcCCCCcEEEccCcccCcc
Q 046000 416 ISDQINESSNLRVLLLRGNYLEGP 439 (470)
Q Consensus 416 ~~~~~~~~~~L~~L~l~~n~i~~~ 439 (470)
.+..+..+++|++|++++|++...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 555666677777777777776643
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=4.7e-21 Score=167.05 Aligned_cols=195 Identities=18% Similarity=0.182 Sum_probs=98.1
Q ss_pred CccEEEccccccccccCccccCCCcccEEecCCCc-CCCcchhhhcCcccccEEEccc-cccccccchhhcCCCCccEEE
Q 046000 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNN-FHDQIFPKYMNLTRLWFLYLDN-NKFSGKIEDGLLKSNQLKELD 310 (470)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~L~ 310 (470)
+++.|++++|.+....+..+..+++|++|++++|. +.......|..+++|+.|++++ |.+....+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445555555555555554 4443344455555666666655 555544444555666666666
Q ss_pred CCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCe---EEEccCc-cccCcccccc-ccCccc-EEEcc
Q 046000 311 MSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQ---LLSVSEN-CLSGFMTSSF-SLSSLV-HLYVQ 384 (470)
Q Consensus 311 l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~~-~~~~L~-~L~l~ 384 (470)
+++|.+.+ +|. +..+++|+ .|++++| .+..++...+ .+++|+ +|+++
T Consensus 112 l~~n~l~~-lp~--------------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 112 IFNTGLKM-FPD--------------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164 (239)
T ss_dssp EEEECCCS-CCC--------------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECC
T ss_pred CCCCCCcc-ccc--------------------------cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcC
Confidence 66665542 322 11222222 5555555 4444444333 345555 55555
Q ss_pred CCcccccCccchhcCCCccEEEcCCcc-ceeecchhhhcC-CCCcEEEccCcccCcccchhhccCCCCCeEEccCc
Q 046000 385 RNDLSGTIPNALFRSSKLMTLDLRDNG-FSGIISDQINES-SNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHN 458 (470)
Q Consensus 385 ~~~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n 458 (470)
+|++....+..+.. ++|+.|++++|+ +....+..+..+ ++|++|++++|+++. +|.. .++.|+.|+++++
T Consensus 165 ~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 165 NNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp SCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 55555333333333 555555555553 554444455555 556666666665553 2222 3455555555554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.1e-21 Score=175.03 Aligned_cols=206 Identities=19% Similarity=0.174 Sum_probs=105.6
Q ss_pred CCCCcEEEccCCccccccchhh--hcCcCCcEEeccCccCcCccC---hhhhccccccceecccCCCCccccccccCCCC
Q 046000 54 MTRLKVLDTSFNQLSGSLPSVI--VNLASVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRLSSRNNNMLQLKTENFLP 128 (470)
Q Consensus 54 ~~~L~~L~l~~~~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 128 (470)
+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ...+..+++|++|++++|.+.... ..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~------~~ 163 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS------CE 163 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC------TT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh------HH
Confidence 3446666666665555555554 555566666666665554322 122334556666666555543111 12
Q ss_pred cccccCcccEEEccCccccCc--cc-hHhhhcCCCCcEEEccccccCCccCC---CCCCCCcccEEeccCCcccCCCCcc
Q 046000 129 TFQLKHDLKYLDLSHNNLAGD--FP-AWILQNNTKLEVLCLTNNSFTGNLQL---PHSKHDFLHHLDVSSNNFTGKLPQD 202 (470)
Q Consensus 129 ~~~~~~~L~~L~l~~~~i~~~--~~-~~~~~~~~~L~~L~l~~~~i~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~ 202 (470)
.+..+++|++|++++|.+.+. ++ ...+..+++|++|++++|+++..... .+..+++|++|++++|.+.+..|..
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~ 243 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS 243 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence 344455566666666654321 11 11123455566666666655421111 1234455666666666665443433
Q ss_pred hhhh--hccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCC
Q 046000 203 KGII--LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHD 270 (470)
Q Consensus 203 ~~~~--~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 270 (470)
+... +++|++|++++|.+. .+|..+. ++|+.|++++|.+.... .+..+++|+.|++++|.+.+
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP--QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC--CTTSCCCCSCEECSSTTTSC
T ss_pred HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc--hhhhCCCccEEECcCCCCCC
Confidence 3321 246666666666666 3444432 56666666666665431 14556677777777776654
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=4.6e-21 Score=173.90 Aligned_cols=204 Identities=18% Similarity=0.111 Sum_probs=119.0
Q ss_pred CccEEEccccccccccCccc--cCCCcccEEecCCCcCCCcch----hhhcCcccccEEEccccccccccchhhcCCCCc
Q 046000 233 TLTFLHLSKNNFSGELSTLF--TGCVSLWFLDRSHNNFHDQIF----PKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQL 306 (470)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L 306 (470)
+|++|++++|.+....+..+ ..+++|++|++++|.+..... ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 35555555555444444443 445555555555555543211 223356666777777766665555666667777
Q ss_pred cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccc---c-cccCcccEEE
Q 046000 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTS---S-FSLSSLVHLY 382 (470)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~---~-~~~~~L~~L~ 382 (470)
++|++++|++.+.... ..+..+..+++|++|++++|.++.++.. . ..+++|++|+
T Consensus 172 ~~L~Ls~N~l~~~~~~---------------------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~ 230 (310)
T 4glp_A 172 TSLDLSDNPGLGERGL---------------------MAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLD 230 (310)
T ss_dssp CEEECCSCTTCHHHHH---------------------HTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEE
T ss_pred CEEECCCCCCccchhh---------------------hHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEE
Confidence 7777777765311000 0011123455666666666666544432 1 1456777777
Q ss_pred ccCCcccccCccchhcC---CCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcc
Q 046000 383 VQRNDLSGTIPNALFRS---SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNR 459 (470)
Q Consensus 383 l~~~~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~ 459 (470)
+++|++.+..|..+..+ ++|+.|++++|+++ .+|..+ .++|++|++++|++++. |. +..+++|+.|++++|+
T Consensus 231 Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 231 LSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL--PAKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC--CSCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTT
T ss_pred CCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh--cCCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCC
Confidence 77777776555555544 57777777777777 445544 26788888888877742 33 5667788888888887
Q ss_pred ccc
Q 046000 460 ING 462 (470)
Q Consensus 460 ~~~ 462 (470)
++.
T Consensus 306 l~~ 308 (310)
T 4glp_A 306 FLV 308 (310)
T ss_dssp TSC
T ss_pred CCC
Confidence 763
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.3e-20 Score=164.16 Aligned_cols=186 Identities=18% Similarity=0.141 Sum_probs=129.8
Q ss_pred cccEEEccccccccccchhhcCCCCccEEECCCCc-ccCCcchhHHhhhccccEEEcCC-CcccCCCchhhhccCCCeEE
Q 046000 281 RLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNM-LSGHIPHWIANFSSYLEVLLMSK-NFLKGNIPMQLLNHGSLQLL 358 (470)
Q Consensus 281 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~l~~-~~~~~~~~~~~~~~~~L~~L 358 (470)
+++.+++++|++.+..+..+..+++|+.|++++|+ +.+..+..+..+.. ++.|++++ |.+....+..+..+++|+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~-L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK-VTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTT-CCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcC-CcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 34444444444443333344444455555555443 33111122222332 55555555 55554445667788999999
Q ss_pred EccCccccCccccccccCccc---EEEccCC-cccccCccchhcCCCcc-EEEcCCccceeecchhhhcCCCCcEEEccC
Q 046000 359 SVSENCLSGFMTSSFSLSSLV---HLYVQRN-DLSGTIPNALFRSSKLM-TLDLRDNGFSGIISDQINESSNLRVLLLRG 433 (470)
Q Consensus 359 ~l~~~~l~~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 433 (470)
++++|.++.++. ...+++|+ +|++++| .+....+..+..+++|+ .|++++|++....+..+.. ++|++|++++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 999999998776 44677777 9999999 99877777899999999 9999999999554445555 8999999999
Q ss_pred cc-cCcccchhhccC-CCCCeEEccCcccccccCCCcc
Q 046000 434 NY-LEGPISNQFCQL-RRLGVMDLSHNRINGSIPSCFT 469 (470)
Q Consensus 434 n~-i~~~~~~~~~~l-~~L~~l~l~~n~~~~~~p~~~~ 469 (470)
|+ ++...+..+..+ ++|+.|++++|++++..+..|.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~ 226 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCT
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChhHhc
Confidence 96 987777889999 9999999999999954444443
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5.8e-20 Score=166.13 Aligned_cols=193 Identities=18% Similarity=0.230 Sum_probs=164.6
Q ss_pred hhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEE
Q 046000 206 ILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFL 285 (470)
Q Consensus 206 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 285 (470)
.+++|++|++++|.+.. ++ .+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+. ..+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 47899999999999884 44 68899999999999999886555 88999999999999998774 468899999999
Q ss_pred EccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccc
Q 046000 286 YLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCL 365 (470)
Q Consensus 286 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 365 (470)
++++|.+.+.. .+..+++|+.|++++|.+.+ ++. +..+.. ++.|++++|.+.+ ++. +..+++|+.|++++|.+
T Consensus 113 ~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~-L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQITDVT--PLAGLSNLQVLYLDLNQITN-ISP-LAGLTN-LQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTT-CCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCCch--hhcCCCCCCEEECCCCccCc-Ccc-ccCCCC-ccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence 99999998543 38899999999999999974 333 555555 9999999999984 333 88899999999999999
Q ss_pred cCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCcccee
Q 046000 366 SGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSG 414 (470)
Q Consensus 366 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 414 (470)
.+++. ...+++|++|++++|++.+.. .+..+++|+.|++++|+++.
T Consensus 186 ~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 98776 447899999999999998654 37889999999999999975
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=2.4e-19 Score=157.26 Aligned_cols=178 Identities=21% Similarity=0.185 Sum_probs=133.9
Q ss_pred CccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECC
Q 046000 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMS 312 (470)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 312 (470)
..+.++++++.+..... .+. ++++.|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45677888777764333 222 578888888888877777777888888888888888887667777788888888888
Q ss_pred CCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCccccc
Q 046000 313 NNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGT 391 (470)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~ 391 (470)
+|.+.+..+..+..+.. +++|++++|.+++..+..+..+++|+.|++++|.+..++...+ .+++|++|++++|++.+.
T Consensus 92 ~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQ-LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTT-CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcccCC-CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88887444445555544 8888888888875556667778888888888888887777555 678888888888888866
Q ss_pred CccchhcCCCccEEEcCCcccee
Q 046000 392 IPNALFRSSKLMTLDLRDNGFSG 414 (470)
Q Consensus 392 ~~~~l~~~~~L~~L~l~~n~l~~ 414 (470)
.+..+..+++|+.|++++|++..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 66677788888888888888764
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=8e-19 Score=161.89 Aligned_cols=198 Identities=19% Similarity=0.196 Sum_probs=109.6
Q ss_pred cEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccc-cCccccCCCcccE-Eec
Q 046000 186 HHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGE-LSTLFTGCVSLWF-LDR 263 (470)
Q Consensus 186 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~-L~l 263 (470)
+.++.+++.++ .+|..+ .+++++|++++|.+....+.+|.++++|+.|++++|.+.+. ...+|.+++++.. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666666 666654 34677777777777755555677777777777777776443 3456666766654 344
Q ss_pred CCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCC-cccCCcc-hhHHhhhccccEEEcCCCcc
Q 046000 264 SHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNN-MLSGHIP-HWIANFSSYLEVLLMSKNFL 341 (470)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~-~~~~~~~~~l~~L~l~~~~~ 341 (470)
..|++.......|..+++|+++++++|++....+..+....++..+++.++ .+. .++ ..+......++.|++++|.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence 556666655566667777777777777766554444445555566666443 333 222 22222222344455555554
Q ss_pred cCCCchhhhccCCCeEEEccC-ccccCcccccc-ccCcccEEEccCCccc
Q 046000 342 KGNIPMQLLNHGSLQLLSVSE-NCLSGFMTSSF-SLSSLVHLYVQRNDLS 389 (470)
Q Consensus 342 ~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~-~~~~L~~L~l~~~~l~ 389 (470)
+ .++.......+|+.+++.+ |.++.++...+ .+++|++|++++|+++
T Consensus 167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 4 2222222333455555542 34444444443 4455555555555554
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=4.5e-19 Score=150.89 Aligned_cols=179 Identities=18% Similarity=0.129 Sum_probs=90.8
Q ss_pred cEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCC
Q 046000 259 WFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSK 338 (470)
Q Consensus 259 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 338 (470)
+.++++++.+..... . -.+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+.. +++|++++
T Consensus 10 ~~v~c~~~~l~~~p~-~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT-G--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS-LTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCS-C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT-CCEEECCS
T ss_pred CEEEecCCCccCCCC-C--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCC-cCEEECCC
Confidence 455555555543221 1 1346666777666666555555566666666666666665222222233332 55555555
Q ss_pred CcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecc
Q 046000 339 NFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIIS 417 (470)
Q Consensus 339 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 417 (470)
|.+++..+..+..+++|++|++++|.+..++...+ .+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 55553333344455555555555555555444433 44555555555555554444444455555555555554431
Q ss_pred hhhhcCCCCcEEEccCcccCcccchhhccCC
Q 046000 418 DQINESSNLRVLLLRGNYLEGPISNQFCQLR 448 (470)
Q Consensus 418 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 448 (470)
.+++|+.|+++.|.+++.+|..++.++
T Consensus 163 ----~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 ----TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ----CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ----CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 234455555555555555555544443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=1.5e-18 Score=160.15 Aligned_cols=242 Identities=14% Similarity=0.045 Sum_probs=183.8
Q ss_pred cEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCC-chhhcCCCCccE-EEc
Q 046000 162 EVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNL-PSSIGDMKTLTF-LHL 239 (470)
Q Consensus 162 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~-L~l 239 (470)
++++.++++++.+. ..+ .+++++|++++|.+. .+|...+..+++|++|++++|.+.+.+ +.+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt~iP-~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIP-SDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCC-TTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccC-cCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777777777433 333 467999999999998 788777777999999999999986544 456888888776 556
Q ss_pred cccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccc-cccccccchhhcCC-CCccEEECCCCccc
Q 046000 240 SKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDN-NKFSGKIEDGLLKS-NQLKELDMSNNMLS 317 (470)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 317 (470)
..|.+....+..|..+++|++|++++|.+.......+....++..+++.+ +.+.......+... ..++.|++++|.+.
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67888888888999999999999999998876666666677788888866 45654445555555 46889999999998
Q ss_pred CCcchhHHhhhccccEEEcCC-CcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccch
Q 046000 318 GHIPHWIANFSSYLEVLLMSK-NFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNAL 396 (470)
Q Consensus 318 ~~~~~~~~~~~~~l~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 396 (470)
.++...+.... ++.+.+.+ |.++...+..|..+++|+.|++++|+++.++... +.+|++|.+.++.-....| .+
T Consensus 168 -~i~~~~f~~~~-L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--~~~L~~L~~l~~~~l~~lP-~l 242 (350)
T 4ay9_X 168 -EIHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--LENLKKLRARSTYNLKKLP-TL 242 (350)
T ss_dssp -EECTTSSTTEE-EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS--CTTCCEEECTTCTTCCCCC-CT
T ss_pred -CCChhhccccc-hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh--hccchHhhhccCCCcCcCC-Cc
Confidence 66665555554 88999875 5565444456789999999999999999988765 5677777776665433555 47
Q ss_pred hcCCCccEEEcCCccc
Q 046000 397 FRSSKLMTLDLRDNGF 412 (470)
Q Consensus 397 ~~~~~L~~L~l~~n~l 412 (470)
..+++|+.++++++..
T Consensus 243 ~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 243 EKLVALMEASLTYPSH 258 (350)
T ss_dssp TTCCSCCEEECSCHHH
T ss_pred hhCcChhhCcCCCCcc
Confidence 7889999999987653
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=147.22 Aligned_cols=153 Identities=23% Similarity=0.260 Sum_probs=91.2
Q ss_pred EEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCc-hhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccC
Q 046000 308 ELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIP-MQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQR 385 (470)
Q Consensus 308 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~ 385 (470)
.++++++.+. .+|..+ +..++.|++++|.+++..+ ..+..+++|+.|++++|.++.++...+ .+++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4555555544 334322 2224555555555553322 335566666666666666666655444 566666666666
Q ss_pred CcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccccccc
Q 046000 386 NDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSI 464 (470)
Q Consensus 386 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 464 (470)
|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++++..|..+..+++|+.|++++|+++...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 6666555555666666666666666666655666666666666666666666655666666666666666666665443
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.7e-18 Score=167.74 Aligned_cols=188 Identities=25% Similarity=0.288 Sum_probs=140.6
Q ss_pred CccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECC
Q 046000 233 TLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMS 312 (470)
Q Consensus 233 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 312 (470)
+++.|++++|.+... +..+ .++|++|++++|.+.... ..+++|+.|++++|.+++ .+. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 789999999988763 3333 378999999999887533 457889999999988886 343 433 88999999
Q ss_pred CCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccC
Q 046000 313 NNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTI 392 (470)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~ 392 (470)
+|.+.+ +|. ....++.|++++|.+++ +|. .+++|+.|++++|.++.++. +. ++|+.|++++|+++ .+
T Consensus 129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCC-ch
Confidence 988874 555 23448888888888874 554 46788888888888888776 33 78888888888888 44
Q ss_pred ccchhcCCCc-------cEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCC
Q 046000 393 PNALFRSSKL-------MTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLR 448 (470)
Q Consensus 393 ~~~l~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~ 448 (470)
|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 44 432 66 88888888888 4677677788888888888888887777776653
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7.1e-18 Score=151.04 Aligned_cols=172 Identities=21% Similarity=0.221 Sum_probs=120.9
Q ss_pred cCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhcccc
Q 046000 253 TGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLE 332 (470)
Q Consensus 253 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 332 (470)
..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+ ++. +..+.. ++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~-L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-LKDLKK-LK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-GTTCTT-CC
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-hccCCC-CC
Confidence 4567888888888887654 346778888888888888875444 7788888888888888763 332 444444 77
Q ss_pred EEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccc
Q 046000 333 VLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGF 412 (470)
Q Consensus 333 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l 412 (470)
.|++++|.+.+. ..+..+++|+.|++++|.+.++ .....+++|++|++++|.+.+..+ +..+++|+.|++++|++
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 777777777642 3466777777777777777766 233366777777777777775443 66777777777777777
Q ss_pred eeecchhhhcCCCCcEEEccCcccCc
Q 046000 413 SGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 413 ~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
.+. + .+..+++|+.|++++|++..
T Consensus 191 ~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 SDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-h-hhccCCCCCEEECcCCcccC
Confidence 643 3 36777777777777777764
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=4.8e-18 Score=145.43 Aligned_cols=151 Identities=19% Similarity=0.191 Sum_probs=89.9
Q ss_pred cEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccC
Q 046000 283 WFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSE 362 (470)
Q Consensus 283 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 362 (470)
+.++++++++... +..+ .++++.|++++|.+.+..+..+..+.. ++.|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~~i-P~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~-L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEI-PTNL--PETITEIRLEQNTIKVIPPGAFSPYKK-LRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSC-CSSC--CTTCCEEECCSSCCCEECTTSSTTCTT-CCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcC-CCcc--CcCCCEEECCCCcCCCcCHhHhhCCCC-CCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 4556666655532 2222 256677777777666333334444443 66666666666655566666666666666666
Q ss_pred ccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000 363 NCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE 437 (470)
Q Consensus 363 ~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~ 437 (470)
|.++.++...+ .+++|++|++++|++.+..+..+..+++|+.|++++|++....++.+..+++|++|++++|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66666665554 4666666666666666555566666666666666666666555555666666666666666654
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.1e-17 Score=142.24 Aligned_cols=149 Identities=19% Similarity=0.212 Sum_probs=73.3
Q ss_pred cEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeecc
Q 046000 137 KYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMA 216 (470)
Q Consensus 137 ~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 216 (470)
+.++.+++.+. .+|..+ .++++.|+++++++.......+..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 45566666555 444322 345666666666655444444555555555555555555 3343333334555555555
Q ss_pred CCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcccc
Q 046000 217 NNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNN 290 (470)
Q Consensus 217 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 290 (470)
+|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+..+++|+.+++++|
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 55554333333445555555555555554444444444444555555444444333333344444444444444
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=9e-18 Score=144.78 Aligned_cols=133 Identities=22% Similarity=0.165 Sum_probs=80.1
Q ss_pred ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCC
Q 046000 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD 409 (470)
Q Consensus 331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 409 (470)
++.|++++|.+.+..+..+..+++|+.|++++|.+..++...+ .+++|++|++++|+++...+..+..+++|+.|++++
T Consensus 42 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 121 (229)
T 3e6j_A 42 AQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121 (229)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccC
Confidence 5555555555555455555566666666666666665555444 456666666666666655555555666666666666
Q ss_pred ccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccccccc
Q 046000 410 NGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSI 464 (470)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~ 464 (470)
|++. .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|+++...
T Consensus 122 N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 122 NKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred Cccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 6666 44555566666666666666666544455666666666666666665443
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.1e-17 Score=147.98 Aligned_cols=191 Identities=20% Similarity=0.242 Sum_probs=154.1
Q ss_pred cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000 209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD 288 (470)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 288 (470)
++..+.+....+.+. ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+... +..+++|+.|+++
T Consensus 25 ~~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred HHHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECC
Confidence 444555666555432 2345788999999999988755 347789999999999999987544 8899999999999
Q ss_pred ccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCc
Q 046000 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF 368 (470)
Q Consensus 289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 368 (470)
+|.+.+. ..+..+++|+.|++++|.+.+ + ..+..+.. ++.|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 99 ENKVKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp SSCCCCG--GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCCC--hhhccCCCCCEEECCCCcCCC-C-hhhcCCCC-CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 9998853 348889999999999999874 3 44555555 99999999998754 5688899999999999999988
Q ss_pred cccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceee
Q 046000 369 MTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGI 415 (470)
Q Consensus 369 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 415 (470)
++ ...+++|++|++++|.+++. + .+..+++|+.|++++|++...
T Consensus 172 ~~-l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 172 VP-LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp GG-GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred hh-hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 76 44789999999999999854 3 488899999999999998753
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.4e-17 Score=163.33 Aligned_cols=188 Identities=21% Similarity=0.219 Sum_probs=125.9
Q ss_pred cEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCC
Q 046000 235 TFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNN 314 (470)
Q Consensus 235 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 314 (470)
..+.+..+.+..... +..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|
T Consensus 24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 334444444443322 34567788888888877653 356778888888888888775444 777888888888888
Q ss_pred cccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCcc
Q 046000 315 MLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPN 394 (470)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 394 (470)
.+. .++ .+..+.. |+.|++++|.+.+ + ..+..+++|+.|++++|.+.++ .....+++|+.|+|++|.+.+..+
T Consensus 98 ~l~-~l~-~l~~l~~-L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 98 KIK-DLS-SLKDLKK-LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp CCC-CCT-TSTTCTT-CCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCC-CCh-hhccCCC-CCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-
Confidence 776 333 3444444 7777777777763 2 3466777777777777777765 223366777777777777775544
Q ss_pred chhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 395 ALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 395 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|++..
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 66777777777777777653 346777777777777777764
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=8.7e-18 Score=148.01 Aligned_cols=169 Identities=22% Similarity=0.222 Sum_probs=91.7
Q ss_pred CCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEE
Q 046000 255 CVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVL 334 (470)
Q Consensus 255 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L 334 (470)
+.++..++++++.+.+.. .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+.+ ++. +..+.. ++.|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~-L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISD-LSP-LKDLTK-LEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSS-CCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCC-Chh-hccCCC-CCEE
Confidence 445556666666665533 455667777777777766632 2 45666677777777776653 222 333333 5566
Q ss_pred EcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCcccee
Q 046000 335 LMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSG 414 (470)
Q Consensus 335 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 414 (470)
++++|.+++ ++.. .. ++|+.|++++|.+++++. ...+++|++|++++|++++. ..+..+++|+.|++++|++.+
T Consensus 91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp ECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred ECCCCccCC-cCcc-cc-CcccEEEccCCccCCChh-hcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 666665542 2221 11 555555555555555432 22455555555555555533 234555555555555555554
Q ss_pred ecchhhhcCCCCcEEEccCcccCc
Q 046000 415 IISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 415 ~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
. ..+..+++|+.|++++|++..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h--HHhccCCCCCEEeCCCCcccC
Confidence 3 345555555555555555543
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=4.7e-17 Score=157.73 Aligned_cols=188 Identities=23% Similarity=0.313 Sum_probs=152.9
Q ss_pred cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000 209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD 288 (470)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 288 (470)
+++.|++++|.+.+ +|..+ +++|+.|++++|.+... + ..+++|++|++++|.+... +. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECC
Confidence 89999999999985 66544 47899999999998843 3 4578999999999999873 33 544 99999999
Q ss_pred ccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCc
Q 046000 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGF 368 (470)
Q Consensus 289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 368 (470)
+|.+++. +. .+++|+.|++++|.+.+ +|. ....++.|++++|.+++ +|. +. ++|+.|++++|.++.+
T Consensus 129 ~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~l 195 (571)
T 3cvr_A 129 NNQLTML-PE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESL 195 (571)
T ss_dssp SSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSC
T ss_pred CCcCCCC-CC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCch
Confidence 9999863 33 68899999999999984 665 33459999999999985 666 54 8999999999999988
Q ss_pred cccccccCcc-------cEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCC
Q 046000 369 MTSSFSLSSL-------VHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESS 424 (470)
Q Consensus 369 ~~~~~~~~~L-------~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 424 (470)
+. ... +| +.|++++|.++ .+|..+..+++|+.|++++|++.+.+|..+..++
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 77 322 67 99999999999 5677777799999999999999988888877654
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.4e-17 Score=160.57 Aligned_cols=187 Identities=20% Similarity=0.225 Sum_probs=111.0
Q ss_pred CcCceeeccCCCCCCccc---cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccC
Q 046000 12 KNLEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSN 88 (470)
Q Consensus 12 ~~L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 88 (470)
..+..+.++.+.+.+... +.+|+.|++++|.+... + .++.+++|++|+|++|.+.+..+ +..+++|++|+|++
T Consensus 21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 345556666666655444 66777777777777643 2 47777777777777777765443 77777777777777
Q ss_pred ccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEccc
Q 046000 89 SYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTN 168 (470)
Q Consensus 89 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~ 168 (470)
|.+.+ .+ .+..+++|+.|++++|.+... +.+..+++|+.|++++|.+. .++ .+..+++|+.|++++
T Consensus 97 N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~-~l~--~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 97 NKIKD-LS--SLKDLKKLKSLSLEHNGISDI--------NGLVHLPQLESLYLGNNKIT-DIT--VLSRLTKLDTLSLED 162 (605)
T ss_dssp SCCCC-CT--TSTTCTTCCEEECTTSCCCCC--------GGGGGCTTCSEEECCSSCCC-CCG--GGGSCTTCSEEECCS
T ss_pred CCCCC-Ch--hhccCCCCCEEEecCCCCCCC--------ccccCCCccCEEECCCCccC-Cch--hhcccCCCCEEECcC
Confidence 77763 22 466666666776666655421 23455566666666666665 332 244566666666666
Q ss_pred cccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccC
Q 046000 169 NSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFE 221 (470)
Q Consensus 169 ~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 221 (470)
|.+.+..+ +..+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+.
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~~--l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHISD-LRA--LAGLKNLDVLELFSQECL 210 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG--GTTCTTCSEEECCSEEEE
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCCC-ChH--HccCCCCCEEEccCCcCc
Confidence 66554333 5555556666666655542 221 223455555555555544
No 109
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.8e-17 Score=151.56 Aligned_cols=263 Identities=14% Similarity=0.113 Sum_probs=188.2
Q ss_pred CCcccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcC--------CCCccEEEccccccccccCcccc
Q 046000 182 HDFLHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGD--------MKTLTFLHLSKNNFSGELSTLFT 253 (470)
Q Consensus 182 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~--------l~~L~~L~l~~~~~~~~~~~~~~ 253 (470)
+++|+.|++++|.+. .+.... ..++.++.+.+..+.+ ...+|.+ +++|+.+++.+ .+......+|.
T Consensus 48 l~~L~~LdLs~n~i~-~~~~~~-~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIK-MYSGKA-GTYPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEEC-CEEESS-SSSGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeE-EecCcc-cccccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 678999999999876 111111 1123344455555543 3456777 99999999998 88888888999
Q ss_pred CCCcccEEecCCCcCCCcchhhhcCcccccEEEccccc----cccccchhhcCCCCcc-EEECCCCcccCCcchhHHhh-
Q 046000 254 GCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK----FSGKIEDGLLKSNQLK-ELDMSNNMLSGHIPHWIANF- 327 (470)
Q Consensus 254 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~----~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~- 327 (470)
+|++|+.+++..|.+.......|..+.++..+...... ........+..+..|+ .+.+.... .++..+...
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~ 198 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAG 198 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTT
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhcc
Confidence 99999999999998877777778877777777665422 1222334455666666 45554322 333333322
Q ss_pred --hccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCcc-
Q 046000 328 --SSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLM- 403 (470)
Q Consensus 328 --~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~- 403 (470)
...++.+.+.+.-...........|++|+.+++++|.++.++...| .+++|+++++.+| +..+...+|.+|++|+
T Consensus 199 ~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 199 LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccE
Confidence 2335566555442211111112348999999999999999998888 7899999999988 7767788999999999
Q ss_pred EEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEc
Q 046000 404 TLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDL 455 (470)
Q Consensus 404 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l 455 (470)
.+++.+ .++.+.+..|.+|++|+++++++|.++...+.+|.++++|+.++.
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999 787777889999999999999999999888889999999998864
No 110
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=4.4e-17 Score=148.95 Aligned_cols=288 Identities=11% Similarity=0.063 Sum_probs=192.0
Q ss_pred CcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhh-------
Q 046000 134 HDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGII------- 206 (470)
Q Consensus 134 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------- 206 (470)
+++++|.++++--. .-...+...+++|+.|++++|++...... ...++.++.+.+..+ .+|...|..
T Consensus 25 ~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~-~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 25 NSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGK-AGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEES-SSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred CceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCc-ccccccccccccccc----ccCHHHhccccccccc
Confidence 44666666654211 11111222267778888887777611111 112222344444444 445566666
Q ss_pred -hccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCc----CCCcchhhhcCccc
Q 046000 207 -LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNN----FHDQIFPKYMNLTR 281 (470)
Q Consensus 207 -~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~~~~~~~ 281 (470)
+++|+.+.+.+ .+..+...+|.++++|+.++++++.+....+.+|.++.++..+...... ........|..+..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 88999999988 7776677789999999999999998888888888888888777766521 11112233445666
Q ss_pred cc-EEEccccc-cccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEE
Q 046000 282 LW-FLYLDNNK-FSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLS 359 (470)
Q Consensus 282 L~-~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 359 (470)
|+ .+.+.... +.......-....++..+.+.+.-.. .....+......++.+++.+|.++......|..|.+|+.++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 66 44443321 11111111123456677776654221 22223333344599999999988866667899999999999
Q ss_pred ccCccccCcccccc-ccCccc-EEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEc
Q 046000 360 VSENCLSGFMTSSF-SLSSLV-HLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLL 431 (470)
Q Consensus 360 l~~~~l~~~~~~~~-~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 431 (470)
+.++ +..++...| .+++|+ ++.+.+ .+..+.+.+|.+|++|+.+++++|.+..+....|.+|++|+.++.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9998 888888888 789999 999988 777677899999999999999999999888889999999999874
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=2.4e-17 Score=152.58 Aligned_cols=175 Identities=22% Similarity=0.163 Sum_probs=85.5
Q ss_pred cEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhc-CCCCccEEECCCCcccCCcchhHHhhhccccEEEcC
Q 046000 259 WFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLL-KSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMS 337 (470)
Q Consensus 259 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~ 337 (470)
+.++++++.+.... ..+ .+.++.|++++|.+.+..+..+. .+++|+.|++++|.+.+
T Consensus 21 ~~l~c~~~~l~~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~------------------- 78 (361)
T 2xot_A 21 NILSCSKQQLPNVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF------------------- 78 (361)
T ss_dssp TEEECCSSCCSSCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-------------------
T ss_pred CEEEeCCCCcCccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-------------------
Confidence 45666666554422 111 23455666666666544444444 55566666666655543
Q ss_pred CCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeec
Q 046000 338 KNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGII 416 (470)
Q Consensus 338 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 416 (470)
..+..+..+++|+.|++++|.+..++...+ .+++|++|++++|++....+..+..+++|+.|++++|++....
T Consensus 79 ------i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 79 ------ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp ------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred ------cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 333334444555555555555544444333 4455555555555555444445555555555555555554332
Q ss_pred chhh---hcCCCCcEEEccCcccCcccchhhccCCC--CCeEEccCcccc
Q 046000 417 SDQI---NESSNLRVLLLRGNYLEGPISNQFCQLRR--LGVMDLSHNRIN 461 (470)
Q Consensus 417 ~~~~---~~~~~L~~L~l~~n~i~~~~~~~~~~l~~--L~~l~l~~n~~~ 461 (470)
+..+ ..+++|+.|+|++|+|+...+..+..++. ++.|++++|++.
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 2222 33455555555555555433344444444 245555555544
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.1e-17 Score=136.21 Aligned_cols=150 Identities=15% Similarity=0.182 Sum_probs=105.5
Q ss_pred CCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEE
Q 046000 304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLY 382 (470)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~ 382 (470)
++|+.|++++|.+. .++ .+..+.. +++|++++|.+. .+..+..+++|++|++++|.+.+.....+ .+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~-L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHN-IKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTT-CSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCC-CCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34444444444444 333 2333332 555555555433 22356678889999999988876444444 788999999
Q ss_pred ccCCcccccCccchhcCCCccEEEcCCcc-ceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000 383 VQRNDLSGTIPNALFRSSKLMTLDLRDNG-FSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461 (470)
Q Consensus 383 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~ 461 (470)
+++|++.+..+..+..+++|+.|++++|+ +.. ++ .+..+++|++|++++|++++ ++ .+..+++|+.|++++|+|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 99999987778888899999999999998 664 44 58889999999999999985 33 7888999999999999986
Q ss_pred c
Q 046000 462 G 462 (470)
Q Consensus 462 ~ 462 (470)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.70 E-value=9e-17 Score=137.49 Aligned_cols=151 Identities=20% Similarity=0.201 Sum_probs=85.2
Q ss_pred cEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCC
Q 046000 259 WFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSK 338 (470)
Q Consensus 259 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 338 (470)
+.++++++.+.... ..+ .++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+.. +++|++++
T Consensus 14 ~~v~c~~~~l~~iP-~~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~-L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIP-TNL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-LNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCC-SSC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSS-CCEEECCS
T ss_pred CEEEcCCCCcCcCC-Ccc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcC-CCEEECCC
Confidence 34555555554322 111 145666666666665544445556666666666666665444555555444 66666666
Q ss_pred CcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccce
Q 046000 339 NFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFS 413 (470)
Q Consensus 339 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 413 (470)
|.++...+..+..+++|+.|++++|.+..+++..+ .+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66654444445556666666666666666554444 4566666666666666555555556666666666666653
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=1.9e-16 Score=136.41 Aligned_cols=151 Identities=21% Similarity=0.200 Sum_probs=89.7
Q ss_pred CceeeccCCCCCCccc--cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCccC
Q 046000 14 LEALDLSFNNINGTVE--SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNSYF 91 (470)
Q Consensus 14 L~~L~ls~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~ 91 (470)
-+.++++++.+...+. .+++++|++++|.+++..+..|.++++|++|+|++|.+....+..+..+++|++|++++|.+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 4566777766665544 55666666666666666666666666666666666666644445556666666666666666
Q ss_pred cCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEcccccc
Q 046000 92 EGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSF 171 (470)
Q Consensus 92 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i 171 (470)
+ ..+...+..+ ++|++|++++|.+. .+|..+ ..+++|+.|++++|.+
T Consensus 101 ~-~l~~~~~~~l------------------------------~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 101 T-VLPSAVFDRL------------------------------VHLKELFMCCNKLT-ELPRGI-ERLTHLTHLALDQNQL 147 (229)
T ss_dssp C-CCCTTTTTTC------------------------------TTCCEEECCSSCCC-SCCTTG-GGCTTCSEEECCSSCC
T ss_pred C-ccChhHhCcc------------------------------hhhCeEeccCCccc-ccCccc-ccCCCCCEEECCCCcC
Confidence 5 2232334444 44555555555555 444433 3556666666666666
Q ss_pred CCccCCCCCCCCcccEEeccCCcccC
Q 046000 172 TGNLQLPHSKHDFLHHLDVSSNNFTG 197 (470)
Q Consensus 172 ~~~~~~~~~~~~~L~~L~l~~~~~~~ 197 (470)
.......+..+++|+.|++++|.+..
T Consensus 148 ~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 148 KSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CccCHHHHhCCCCCCEEEeeCCCccC
Confidence 55444555666666777776666553
No 115
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1.3e-16 Score=130.57 Aligned_cols=137 Identities=18% Similarity=0.151 Sum_probs=111.8
Q ss_pred cccEEEcCCCccc-CCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcC
Q 046000 330 YLEVLLMSKNFLK-GNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLR 408 (470)
Q Consensus 330 ~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 408 (470)
.++.|++++|.+. +.+|..+..+++|+.|++++|.+.+. .....+++|++|++++|++.+..+..+..+++|+.|+++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 3666666666665 45666677788999999999998877 444478999999999999987677777789999999999
Q ss_pred Cccceeec-chhhhcCCCCcEEEccCcccCcccc---hhhccCCCCCeEEccCcccccccCCCc
Q 046000 409 DNGFSGII-SDQINESSNLRVLLLRGNYLEGPIS---NQFCQLRRLGVMDLSHNRINGSIPSCF 468 (470)
Q Consensus 409 ~n~l~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~l~l~~n~~~~~~p~~~ 468 (470)
+|++.+.. +..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.++ .+|.+-
T Consensus 104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~ 166 (168)
T 2ell_A 104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDSD 166 (168)
T ss_dssp SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSSS
T ss_pred CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccccc
Confidence 99998642 2678899999999999999986555 58899999999999999988 677653
No 116
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2.1e-16 Score=132.10 Aligned_cols=128 Identities=23% Similarity=0.239 Sum_probs=74.5
Q ss_pred cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCch-hhhccCCCeEEEccCccccCcccccc-ccCcccEEEcc
Q 046000 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPM-QLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQ 384 (470)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~ 384 (470)
+.++++++.+. .+|..+.. .++.|++++|.+.+..+. .+..+++|++|++++|.++.+.+..+ .+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 55666666664 45543322 366666666666533332 25556666666666666665544443 55666666666
Q ss_pred CCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 385 RNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 385 ~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
+|++.+..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 666665555555666666666666666665555566666666666666666654
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.68 E-value=1.7e-16 Score=146.92 Aligned_cols=154 Identities=23% Similarity=0.234 Sum_probs=128.9
Q ss_pred cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhh-ccCCCeEEEccCccccCcccccc-ccCcccEEEcc
Q 046000 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLL-NHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQ 384 (470)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~ 384 (470)
+.++++++.+. .+|..+ +..++.|++++|.+++..+..+. .+++|+.|++++|.+..++...+ .+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 46777777766 555533 33477888888888766666676 89999999999999999887766 78999999999
Q ss_pred CCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhh---ccCCCCCeEEccCcccc
Q 046000 385 RNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQF---CQLRRLGVMDLSHNRIN 461 (470)
Q Consensus 385 ~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~l~~L~~l~l~~n~~~ 461 (470)
+|++....+..+..+++|+.|++++|++....+..|..+++|++|+|++|+++...+..+ ..+++|+.|++++|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999997877889999999999999999998888999999999999999999997555555 67999999999999999
Q ss_pred cccC
Q 046000 462 GSIP 465 (470)
Q Consensus 462 ~~~p 465 (470)
+ +|
T Consensus 177 ~-l~ 179 (361)
T 2xot_A 177 K-LP 179 (361)
T ss_dssp C-CC
T ss_pred c-cC
Confidence 4 44
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=1.2e-15 Score=130.52 Aligned_cols=137 Identities=18% Similarity=0.158 Sum_probs=97.4
Q ss_pred ccEEeccCCcccCCCCcchhhhhccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecC
Q 046000 185 LHHLDVSSNNFTGKLPQDKGIILQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRS 264 (470)
Q Consensus 185 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 264 (470)
+++|++++|.+.+..+...+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 45666666665533344444556677777777777765555667777777777777777776666667777777777777
Q ss_pred CCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcc
Q 046000 265 HNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIP 321 (470)
Q Consensus 265 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 321 (470)
+|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 777777666677777888888888887776667777788888888888888765444
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.4e-16 Score=140.23 Aligned_cols=165 Identities=22% Similarity=0.265 Sum_probs=72.5
Q ss_pred CCcCceeeccCCCCCCccc---cccccccccccccCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEecc
Q 046000 11 LKNLEALDLSFNNINGTVE---SQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLS 87 (470)
Q Consensus 11 ~~~L~~L~ls~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 87 (470)
+++++.++++++.+.+... +++|++|++++|.++. ++ .++.+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3344455555555543332 4455555555555543 22 34555555555555555543322 4555555555555
Q ss_pred CccCcCccChhhhccccccceecccCCCCccccccccCCCCcccccCcccEEEccCccccCccchHhhhcCCCCcEEEcc
Q 046000 88 NSYFEGTFPISSLANHSKLKVLRLSSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLT 167 (470)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 167 (470)
+|.+.+ .+ .+.. ++|+.|++++|.+... +.+..+++|++|++++|.++ .++ .+..+++|+.|+++
T Consensus 94 ~N~l~~-l~--~~~~-~~L~~L~L~~N~l~~~--------~~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L~~L~L~ 158 (263)
T 1xeu_A 94 RNRLKN-LN--GIPS-ACLSRLFLDNNELRDT--------DSLIHLKNLEILSIRNNKLK-SIV--MLGFLSKLEVLDLH 158 (263)
T ss_dssp SSCCSC-CT--TCCC-SSCCEEECCSSCCSBS--------GGGTTCTTCCEEECTTSCCC-BCG--GGGGCTTCCEEECT
T ss_pred CCccCC-cC--cccc-CcccEEEccCCccCCC--------hhhcCcccccEEECCCCcCC-CCh--HHccCCCCCEEECC
Confidence 555442 11 1111 4444444444443311 12333444444444444444 222 13344444444444
Q ss_pred ccccCCccCCCCCCCCcccEEeccCCccc
Q 046000 168 NNSFTGNLQLPHSKHDFLHHLDVSSNNFT 196 (470)
Q Consensus 168 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~~ 196 (470)
+|.+.+. ..+..+++|+.|++++|.+.
T Consensus 159 ~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 159 GNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred CCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 4444432 33334444444444444433
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=4.7e-16 Score=130.80 Aligned_cols=103 Identities=18% Similarity=0.212 Sum_probs=51.5
Q ss_pred ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCc-ccccCccchhcCCCccEEEcC
Q 046000 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRND-LSGTIPNALFRSSKLMTLDLR 408 (470)
Q Consensus 331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~ 408 (470)
+++|++++|.+++..+..+..+++|++|++++|.+.+.....+ .+++|++|++++|. +.+ .+ .+..+++|+.|+++
T Consensus 90 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 90 LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp CCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECT
T ss_pred CCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECC
Confidence 3333333333333333334445555555555555544222222 45556666666665 432 22 45566666666666
Q ss_pred CccceeecchhhhcCCCCcEEEccCcccC
Q 046000 409 DNGFSGIISDQINESSNLRVLLLRGNYLE 437 (470)
Q Consensus 409 ~n~l~~~~~~~~~~~~~L~~L~l~~n~i~ 437 (470)
+|++.+. + .+..+++|++|++++|+|.
T Consensus 168 ~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 168 FDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 6666642 2 4566666777777766664
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=6e-16 Score=123.84 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=107.1
Q ss_pred ccccEEEcCCCccc-CCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEc
Q 046000 329 SYLEVLLMSKNFLK-GNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDL 407 (470)
Q Consensus 329 ~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l 407 (470)
..++.+++++|.+. +.+|..+..+++|+.|++++|.+.+. .....+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34778888888876 56777778889999999999998887 33447899999999999998767787878999999999
Q ss_pred CCccceee-cchhhhcCCCCcEEEccCcccCcccc---hhhccCCCCCeEEccC
Q 046000 408 RDNGFSGI-ISDQINESSNLRVLLLRGNYLEGPIS---NQFCQLRRLGVMDLSH 457 (470)
Q Consensus 408 ~~n~l~~~-~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~l~l~~ 457 (470)
++|++.+. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999864 34778999999999999999987655 5789999999999864
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.6e-17 Score=161.85 Aligned_cols=105 Identities=23% Similarity=0.299 Sum_probs=55.2
Q ss_pred CeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCc
Q 046000 355 LQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGN 434 (470)
Q Consensus 355 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 434 (470)
|+.|++++|.++.++. ...+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|++|+|++|
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCC
Confidence 5555555555555443 334555555555555555 444455555555555555555553 33 4555555555555555
Q ss_pred ccCccc-chhhccCCCCCeEEccCcccccc
Q 046000 435 YLEGPI-SNQFCQLRRLGVMDLSHNRINGS 463 (470)
Q Consensus 435 ~i~~~~-~~~~~~l~~L~~l~l~~n~~~~~ 463 (470)
++++.. |..+..+++|+.|++++|++++.
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 555443 55555555555555555555533
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=2.7e-17 Score=160.33 Aligned_cols=197 Identities=18% Similarity=0.091 Sum_probs=157.3
Q ss_pred cCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccc-------------cccccchhhcCCCCccEEE-CCCCcccC
Q 046000 253 TGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNK-------------FSGKIEDGLLKSNQLKELD-MSNNMLSG 318 (470)
Q Consensus 253 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 318 (470)
..+++|+.|++++|.+. .++..++.+++|+.|+++++. ..+..+..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 56789999999999886 567888899999999987664 3344556677778888888 5555432
Q ss_pred Ccch------hHHhh-hccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCccccc
Q 046000 319 HIPH------WIANF-SSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGT 391 (470)
Q Consensus 319 ~~~~------~~~~~-~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~ 391 (470)
.++. .+... ...++.|++++|.+++ +|. +..+++|+.|++++|.++.+|.....+++|++|++++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC-
Confidence 2221 11111 1238899999999985 666 899999999999999999888776689999999999999996
Q ss_pred CccchhcCCCccEEEcCCccceeec-chhhhcCCCCcEEEccCcccCcccc---hhhccCCCCCeEEc
Q 046000 392 IPNALFRSSKLMTLDLRDNGFSGII-SDQINESSNLRVLLLRGNYLEGPIS---NQFCQLRRLGVMDL 455 (470)
Q Consensus 392 ~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~l~l 455 (470)
+| .+..+++|+.|++++|++++.. |..+..+++|+.|++++|++++..+ ..+..+|+|+.|++
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 55 7899999999999999999776 8999999999999999999986544 33555899999975
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=2e-15 Score=126.05 Aligned_cols=126 Identities=26% Similarity=0.305 Sum_probs=79.9
Q ss_pred cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccC
Q 046000 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQR 385 (470)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~ 385 (470)
+.++++++.+. .+|..+ +..++.|++++|.++ .+|..+..+++|+.|++++|.++.++...+ .+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666665 455432 233666777776665 555666666667777777776666665544 566666777766
Q ss_pred CcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000 386 NDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE 437 (470)
Q Consensus 386 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~ 437 (470)
|+++...+..+..+++|+.|++++|++....+..+..+++|+.|++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666555566666666666666666666554455666666666666666664
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.63 E-value=9.4e-15 Score=136.16 Aligned_cols=241 Identities=11% Similarity=0.109 Sum_probs=155.0
Q ss_pred cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEcc
Q 046000 209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLD 288 (470)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 288 (470)
+|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+|.+|.+|+.+++..+.+.......|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4555555433 332333445443 466666654 44445556666666666666666665554444454 4566666665
Q ss_pred ccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCcccc--
Q 046000 289 NNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS-- 366 (470)
Q Consensus 289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-- 366 (470)
.+ +......+|..+++|+.+.+.++ +. .+....+.. ..++.+.+.. .+......+|..|++|+.+++.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 33 44445566666777777777654 32 222222222 2377777743 343344667888888999888887654
Q ss_pred ---Ccccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccch
Q 046000 367 ---GFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISN 442 (470)
Q Consensus 367 ---~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 442 (470)
.++...| .+++|+.+.+.+ .+..+...+|.+|++|+.+.|.++ ++.+....|.+| +|+++++++|.+......
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~ 363 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK 363 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence 4555566 688899999884 466566778888899999999665 666667788888 899999999888777777
Q ss_pred hhccCC-CCCeEEccCcccc
Q 046000 443 QFCQLR-RLGVMDLSHNRIN 461 (470)
Q Consensus 443 ~~~~l~-~L~~l~l~~n~~~ 461 (470)
.|.+++ .++.+.+..+.+.
T Consensus 364 ~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 364 VWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCCSCTTCCEEEECGGGHH
T ss_pred cccCCCCCccEEEeCHHHHH
Confidence 788774 7788888776654
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.63 E-value=2.4e-15 Score=124.17 Aligned_cols=131 Identities=21% Similarity=0.266 Sum_probs=70.1
Q ss_pred cEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCc
Q 046000 332 EVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN 410 (470)
Q Consensus 332 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 410 (470)
+.++++++.+. .+|..+ .++|+.|++++|.+..++...+ .+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 34444444443 233222 2455555565555555554443 4555666666666555444444555566666666666
Q ss_pred cceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccccC
Q 046000 411 GFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGSIP 465 (470)
Q Consensus 411 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~~p 465 (470)
++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6554444445555666666666666654444445555666666666666554443
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=1.5e-14 Score=135.46 Aligned_cols=101 Identities=15% Similarity=0.163 Sum_probs=64.1
Q ss_pred hhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCC
Q 046000 348 QLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNL 426 (470)
Q Consensus 348 ~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 426 (470)
.+..+.+|+.+.+..+ +..++...| .+++|+++.+..+ +..+...+|.+|.+|+.+++..+ +..+-...|.+|++|
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 3455667777776543 555555555 5677777777543 54455567777777777777766 555556677777778
Q ss_pred cEEEccCcccCcccchhhccCCCCCeE
Q 046000 427 RVLLLRGNYLEGPISNQFCQLRRLGVM 453 (470)
Q Consensus 427 ~~L~l~~n~i~~~~~~~~~~l~~L~~l 453 (470)
+++++..+ ++ .+...|.+++.|+.+
T Consensus 369 ~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 369 KKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CEEEECCC-CE-EhhheecCCCCCcEE
Confidence 77777654 22 234566667666654
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=1.2e-15 Score=127.61 Aligned_cols=108 Identities=24% Similarity=0.326 Sum_probs=52.2
Q ss_pred CccEEECCCCcccCCcch-hHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEE
Q 046000 305 QLKELDMSNNMLSGHIPH-WIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLY 382 (470)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~ 382 (470)
++++|++++|.+.+..+. .+..+.. +++|++++|.+++..|..+..+++|+.|++++|.++.++...+ .+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPH-LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTT-CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCC-CCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 455555555554422222 1333332 5555555555554444445555555555555555554444433 445555555
Q ss_pred ccCCcccccCccchhcCCCccEEEcCCccce
Q 046000 383 VQRNDLSGTIPNALFRSSKLMTLDLRDNGFS 413 (470)
Q Consensus 383 l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 413 (470)
+++|++++..+..+..+++|+.|++++|++.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5555555444444555555555555555544
No 129
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=5.4e-14 Score=131.77 Aligned_cols=230 Identities=15% Similarity=0.139 Sum_probs=151.0
Q ss_pred chhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCC
Q 046000 225 PSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSN 304 (470)
Q Consensus 225 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 304 (470)
..+|.++.+|+.+.+.++. ......+|.++.+|+.+.+..+ +.......|.++..|+.+.+..+... .........
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~ 230 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT 230 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC
Confidence 3456666777777765542 3345566667777777766554 33334445666666666665544322 223334456
Q ss_pred CccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEc
Q 046000 305 QLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYV 383 (470)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l 383 (470)
+|+.+.+.... . .+....+.....++.+.+..+... .....+..+..++.+......+. ...+ .+.+|+++.+
T Consensus 231 ~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 231 GVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred CCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccc
Confidence 67777765432 1 222222222223667777655432 44556778888988888766543 3333 6899999999
Q ss_pred cCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccccc
Q 046000 384 QRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRINGS 463 (470)
Q Consensus 384 ~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~~~ 463 (470)
.++ +..+...+|.+|.+|+.++|.++ ++.+-...|.+|.+|+.+++..+ ++.....+|.+|++|+.+++..+ ++ .
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~ 379 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-Q 379 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-G
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-E
Confidence 765 55566788999999999999865 66666788999999999999877 77778889999999999999765 33 3
Q ss_pred cCCCcc
Q 046000 464 IPSCFT 469 (470)
Q Consensus 464 ~p~~~~ 469 (470)
+..+|.
T Consensus 380 ~~~~F~ 385 (394)
T 4fs7_A 380 YRYDFE 385 (394)
T ss_dssp GGGGBC
T ss_pred hhheec
Confidence 445554
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.59 E-value=6e-14 Score=130.73 Aligned_cols=249 Identities=10% Similarity=0.066 Sum_probs=191.9
Q ss_pred hccCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCcchhhhcCcccccEEE
Q 046000 207 LQKLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLY 286 (470)
Q Consensus 207 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 286 (470)
+..++.+.+... +..+...+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+.......|..+++|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 456666666543 333455677775 7999999876 666777888885 799999986 56666667899999999999
Q ss_pred ccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCcccc
Q 046000 287 LDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLS 366 (470)
Q Consensus 287 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 366 (470)
+.++++.......|. +.+|+.+.+..+ +. .++...+.....|+.+.+..+ +......+|.. .+|+.+.+ .+.+.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~ 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVT 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCcc
Confidence 999988855555555 689999999865 54 444433333334999999875 44344455665 78999999 45677
Q ss_pred Ccccccc-ccCcccEEEccCCccc-----ccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCccc
Q 046000 367 GFMTSSF-SLSSLVHLYVQRNDLS-----GTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPI 440 (470)
Q Consensus 367 ~~~~~~~-~~~~L~~L~l~~~~l~-----~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 440 (470)
.++...| .+++|+++.+.++.+. .+...+|.+|++|+.+++.+ .+..+-...|.+|++|+.+.+..+ ++...
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 7877777 7899999999988764 46678899999999999995 477777788999999999999665 77677
Q ss_pred chhhccCCCCCeEEccCcccccccCCCcc
Q 046000 441 SNQFCQLRRLGVMDLSHNRINGSIPSCFT 469 (470)
Q Consensus 441 ~~~~~~l~~L~~l~l~~n~~~~~~p~~~~ 469 (470)
..+|.++ .|+.+++.+|......+..|.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred HHhCCCC-CCCEEEEcCCCCccccccccc
Confidence 8899999 999999999998876666664
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=9.2e-15 Score=119.53 Aligned_cols=134 Identities=23% Similarity=0.193 Sum_probs=104.5
Q ss_pred CCCCccEEECCCCccc-CCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCccc
Q 046000 302 KSNQLKELDMSNNMLS-GHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLV 379 (470)
Q Consensus 302 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~ 379 (470)
..++++.|++++|.+. +.+|..+..+.. ++.|++++|.+.+. ..+..+++|+.|++++|.+....+..+ .+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~-L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVN-LEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGG-CCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCC-CCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 3467788888888776 566666555555 88888888887644 667788899999999999888544444 589999
Q ss_pred EEEccCCcccccCc-cchhcCCCccEEEcCCccceeecc---hhhhcCCCCcEEEccCcccCc
Q 046000 380 HLYVQRNDLSGTIP-NALFRSSKLMTLDLRDNGFSGIIS---DQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 380 ~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~L~l~~n~i~~ 438 (470)
+|++++|.+++... ..+..+++|+.|++++|++....+ ..+..+++|++|++++|.+..
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999999985432 678889999999999999986544 478889999999999998873
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=3e-16 Score=132.13 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=109.9
Q ss_pred CCCccEEECCCCcccCCcch------hHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccC
Q 046000 303 SNQLKELDMSNNMLSGHIPH------WIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLS 376 (470)
Q Consensus 303 ~~~L~~L~l~~~~~~~~~~~------~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 376 (470)
...++.++++.+.+.+..+. .+..+.. ++.|++++|.+.+ +| .+..+++|+.|++++|.+.+++.....++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~-L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKA-CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTT-CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCC-CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCC
Confidence 33444444444444433333 5665555 7788888777764 55 67788888888888888887765444668
Q ss_pred cccEEEccCCcccccCccchhcCCCccEEEcCCccceeecc-hhhhcCCCCcEEEccCcccCcccch----------hhc
Q 046000 377 SLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIIS-DQINESSNLRVLLLRGNYLEGPISN----------QFC 445 (470)
Q Consensus 377 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~----------~~~ 445 (470)
+|++|++++|++.+. + .+..+++|+.|++++|++..... ..+..+++|++|++++|++.+..|. .+.
T Consensus 94 ~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1ds9_A 94 TLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171 (198)
T ss_dssp HCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHH
T ss_pred cCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHH
Confidence 899999998888753 3 57788889999999998875332 4678889999999999988765443 377
Q ss_pred cCCCCCeEEccCccccc
Q 046000 446 QLRRLGVMDLSHNRING 462 (470)
Q Consensus 446 ~l~~L~~l~l~~n~~~~ 462 (470)
.+++|+.|+ +|+++.
T Consensus 172 ~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 172 RLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HCSSCSEEC--CGGGTT
T ss_pred hCCCcEEEC--CcccCH
Confidence 889999886 777764
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.8e-14 Score=118.63 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=61.8
Q ss_pred CCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecch--hhhcCCCCcEEEc
Q 046000 354 SLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISD--QINESSNLRVLLL 431 (470)
Q Consensus 354 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~~~~L~~L~l 431 (470)
+|+.|++++|.++++ .....+++|++|++++|.+++..+..+..+++|+.|++++|++.. ++. .+..+++|++|++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEe
Confidence 566666666655554 222255666666666666664444444566666666666666653 333 5566666666666
Q ss_pred cCcccCcccch----hhccCCCCCeEEccCcccc
Q 046000 432 RGNYLEGPISN----QFCQLRRLGVMDLSHNRIN 461 (470)
Q Consensus 432 ~~n~i~~~~~~----~~~~l~~L~~l~l~~n~~~ 461 (470)
++|++.. ++. .+..+++|+.|++++|.+.
T Consensus 121 ~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 121 LRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666653 333 3666666666666666554
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=1.4e-15 Score=153.05 Aligned_cols=191 Identities=19% Similarity=0.189 Sum_probs=111.4
Q ss_pred CcccEEecCCCcCCCcchhhhcCcccccE-----EEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhcc
Q 046000 256 VSLWFLDRSHNNFHDQIFPKYMNLTRLWF-----LYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSY 330 (470)
Q Consensus 256 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~-----l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 330 (470)
+.+..|++..+.+.... ..+.....|+. +++..+.+. ..+..+..++.|+.|++++|.+. .++..++.+..
T Consensus 173 ~~~~~l~L~~n~~~~~~-~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~- 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN-QALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF- 248 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS-
T ss_pred CccceEEeeCCCCCcch-hhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC-
Confidence 45677778777665422 22212222222 222233333 44566778889999999999887 77777776655
Q ss_pred ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCc
Q 046000 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN 410 (470)
Q Consensus 331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 410 (470)
|+.|++++|.++ .+|..+..+++|+.|+|++|.++.++.....+++|++|+|++|.++ .+|..+..+++|+.|+|++|
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 889999999888 7788888889999999999998887776668889999999999887 66777888899999999999
Q ss_pred cceeecchhhhcCC-CCcEEEccCcccCcccchhhccCCCCCeEEccCc
Q 046000 411 GFSGIISDQINESS-NLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHN 458 (470)
Q Consensus 411 ~l~~~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n 458 (470)
++.+.+|..+..+. .+..+++++|.+.+.+|.. |+.|+++.|
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 98877777765542 2234778888888766654 345566655
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=4.7e-15 Score=149.18 Aligned_cols=184 Identities=20% Similarity=0.126 Sum_probs=94.4
Q ss_pred ccccEEEccccccccccchhhcCCCCccEEE-----CCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCC
Q 046000 280 TRLWFLYLDNNKFSGKIEDGLLKSNQLKELD-----MSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGS 354 (470)
Q Consensus 280 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~-----l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~ 354 (470)
+.++.+.+.++.+... +..+.....|+.+. +..+.+. ..+..+..+.. ++.|++++|.+. .++..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~-L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQL-WHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ---------------------------------------------------CCCC-CCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCC-CcEEECCCCCCC-CCChhhcCCCC
Confidence 5567777777666532 22222222222222 2223332 22333444443 777777777776 55655667777
Q ss_pred CeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCc
Q 046000 355 LQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGN 434 (470)
Q Consensus 355 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 434 (470)
|+.|+|++|.++.++.....+++|++|+|++|.++ .+|..+..+++|+.|+|++|.+. .+|..|..+++|++|+|++|
T Consensus 249 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTS
T ss_pred CCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCC
Confidence 77777777777766655556777777777777777 55666777777777777777776 45666777777777777777
Q ss_pred ccCcccchhhccCCC-CCeEEccCcccccccCCCcc
Q 046000 435 YLEGPISNQFCQLRR-LGVMDLSHNRINGSIPSCFT 469 (470)
Q Consensus 435 ~i~~~~~~~~~~l~~-L~~l~l~~n~~~~~~p~~~~ 469 (470)
++++.+|..+..+.. +..+++++|.+++.+|..+.
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 777766666654322 12356777777777776553
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=4.7e-14 Score=117.73 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=63.8
Q ss_pred EEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccc
Q 046000 333 VLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGF 412 (470)
Q Consensus 333 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l 412 (470)
.++++++.++ .+|..+ .++++.|++++|.+..++.....+++|++|++++|.+++..+..|..+++|+.|++++|++
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4455555544 333332 2355555555555554443222455555555555555544444555555555555555555
Q ss_pred eeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCcccc
Q 046000 413 SGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRIN 461 (470)
Q Consensus 413 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~~ 461 (470)
....+..|..+++|++|+|++|+++...+..+..+++|+.|++++|++.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 5444444555555555555555555444444555555555555555544
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=8.9e-14 Score=114.68 Aligned_cols=131 Identities=21% Similarity=0.240 Sum_probs=95.9
Q ss_pred cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccC
Q 046000 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQR 385 (470)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~ 385 (470)
+.++++++.+. .+|..+ ...++.|++++|.+.+..+..+..+++|++|++++|.+..++...+ .+++|++|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45666666555 344322 2347777777777765555566778888888888888887777664 678888888888
Q ss_pred CcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcccCcccc
Q 046000 386 NDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLEGPIS 441 (470)
Q Consensus 386 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 441 (470)
|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++.+..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88886666677788888888888888886666667788888888888888875433
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=7.1e-14 Score=114.11 Aligned_cols=105 Identities=22% Similarity=0.256 Sum_probs=55.6
Q ss_pred eEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcc
Q 046000 356 QLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY 435 (470)
Q Consensus 356 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 435 (470)
+.++++++.++.++... .++|++|++++|.+.+..+..+..+++|+.|++++|+++...+..|..+++|++|+|++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 44555555555544433 2455555555555554445555555555555555555554444444555555555555555
Q ss_pred cCcccchhhccCCCCCeEEccCccccc
Q 046000 436 LEGPISNQFCQLRRLGVMDLSHNRING 462 (470)
Q Consensus 436 i~~~~~~~~~~l~~L~~l~l~~n~~~~ 462 (470)
+++..+..+..+++|+.|++++|+++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 554444445555555555555555553
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=7e-14 Score=111.72 Aligned_cols=100 Identities=22% Similarity=0.178 Sum_probs=56.5
Q ss_pred ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCccccc-CccchhcCCCccEEEcC
Q 046000 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGT-IPNALFRSSKLMTLDLR 408 (470)
Q Consensus 331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~ 408 (470)
++.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+ .+++|++|++++|++++. .+..+..+++|+.|+++
T Consensus 44 L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~ 121 (149)
T 2je0_A 44 LEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF 121 (149)
T ss_dssp CCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECT
T ss_pred CcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCc
Confidence 44444444443322 334455666666666666655322222 466666666666666543 23556666777777777
Q ss_pred Cccceeecc---hhhhcCCCCcEEEcc
Q 046000 409 DNGFSGIIS---DQINESSNLRVLLLR 432 (470)
Q Consensus 409 ~n~l~~~~~---~~~~~~~~L~~L~l~ 432 (470)
+|++++..+ ..+..+++|++|+++
T Consensus 122 ~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 122 NCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcccchHHHHHHHHHHCCCcccccCC
Confidence 777665443 356667777777665
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=2.4e-13 Score=111.91 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=97.2
Q ss_pred hhccCCCeEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcE
Q 046000 349 LLNHGSLQLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRV 428 (470)
Q Consensus 349 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 428 (470)
+..+++|+.|++++|.+..++......++|++|++++|.+.+. ..+..+++|+.|++++|++.+..+..+..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4568899999999999998754222345999999999999865 67889999999999999999766666799999999
Q ss_pred EEccCcccCcccch--hhccCCCCCeEEccCcccccccCC
Q 046000 429 LLLRGNYLEGPISN--QFCQLRRLGVMDLSHNRINGSIPS 466 (470)
Q Consensus 429 L~l~~n~i~~~~~~--~~~~l~~L~~l~l~~n~~~~~~p~ 466 (470)
|++++|+++. ++. .+..+++|+.|++++|+++ .+|.
T Consensus 93 L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~ 130 (176)
T 1a9n_A 93 LILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKH 130 (176)
T ss_dssp EECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred EECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHh
Confidence 9999999974 555 8899999999999999998 5665
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=2.4e-13 Score=111.30 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=50.7
Q ss_pred eEEEccCccccCccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcc
Q 046000 356 QLLSVSENCLSGFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY 435 (470)
Q Consensus 356 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 435 (470)
+.++++++.+..++... .++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+..+..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 34455555554444433 1445555555555554444445555555555555555554333334455555555555555
Q ss_pred cCcccchhhccCCCCCeEEccCcccc
Q 046000 436 LEGPISNQFCQLRRLGVMDLSHNRIN 461 (470)
Q Consensus 436 i~~~~~~~~~~l~~L~~l~l~~n~~~ 461 (470)
++...+..+..+++|+.|++++|++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 55433334555555555555555544
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.46 E-value=1.1e-14 Score=134.29 Aligned_cols=158 Identities=18% Similarity=0.141 Sum_probs=89.5
Q ss_pred CCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhh-----hccCCCeEEEccCccccCcccccc-----
Q 046000 304 NQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQL-----LNHGSLQLLSVSENCLSGFMTSSF----- 373 (470)
Q Consensus 304 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~----- 373 (470)
++|++|++++|.+.......+......++.|++++|.++......+ ...++|++|++++|.+++.+...+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3555555555555433333333333335566666665543222222 134667777777777665433222
Q ss_pred ccCcccEEEccCCcccccC----ccchhcCCCccEEEcCCccceee----cchhhhcCCCCcEEEccCcccCcccchhhc
Q 046000 374 SLSSLVHLYVQRNDLSGTI----PNALFRSSKLMTLDLRDNGFSGI----ISDQINESSNLRVLLLRGNYLEGPISNQFC 445 (470)
Q Consensus 374 ~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~ 445 (470)
..++|++|++++|.+.+.. ...+...++|+.|++++|.+.+. +...+..+++|++|+|++|+|++.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 4677888888888776432 34556667888888888887643 334455678888888888888765555555
Q ss_pred cCCC-----CCeEE--ccCcccc
Q 046000 446 QLRR-----LGVMD--LSHNRIN 461 (470)
Q Consensus 446 ~l~~-----L~~l~--l~~n~~~ 461 (470)
.+.. |+.+. +.+|.+.
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HCC------CEEECCCC----CH
T ss_pred HHhcCCCccchhhHhhhcCCccC
Confidence 4421 55665 5555554
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=5.6e-15 Score=124.26 Aligned_cols=133 Identities=23% Similarity=0.233 Sum_probs=101.6
Q ss_pred hhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCccccccccCcc
Q 046000 299 GLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSFSLSSL 378 (470)
Q Consensus 299 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L 378 (470)
.+..+++|++|++++|.+.+ ++ .+..+.. ++.|++++|.+. .+|..+..+++|+.|++++|.+.+++ ....+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~-L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMEN-LRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTT-CCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCC-CCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCC
Confidence 66777788888888887763 55 5555555 888888888877 56666777788999999999888765 33367899
Q ss_pred cEEEccCCcccccCc-cchhcCCCccEEEcCCccceeecch----------hhhcCCCCcEEEccCcccCc
Q 046000 379 VHLYVQRNDLSGTIP-NALFRSSKLMTLDLRDNGFSGIISD----------QINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 379 ~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~----------~~~~~~~L~~L~l~~n~i~~ 438 (470)
++|++++|.+.+... ..+..+++|+.|++++|++.+..|. .+..+++|+.|+ +++++.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999999999875433 4678889999999999998765443 378899999887 777764
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.41 E-value=2.2e-11 Score=114.00 Aligned_cols=123 Identities=15% Similarity=0.181 Sum_probs=69.3
Q ss_pred ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCC
Q 046000 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD 409 (470)
Q Consensus 331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 409 (470)
++.+.+...... .....+..|+.|+.+.+. +.+..++...| .+.+|+++.+..+ ++.+...+|.+|.+|+.+.|.+
T Consensus 267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~ 343 (394)
T 4gt6_A 267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS 343 (394)
T ss_dssp CCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred ccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence 455554433221 233455667777777774 34555666666 5677777777643 4445556777777777777765
Q ss_pred ccceeecchhhhcCCCCcEEEccCcccCcccchhhccCCCCCeEEccCccc
Q 046000 410 NGFSGIISDQINESSNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460 (470)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~ 460 (470)
+ ++.+-...|.+|++|+.+++.++... ...+..+..|+.+.+..+.+
T Consensus 344 s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 344 S-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp T-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred c-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 4 55455566777777777777776543 24556667777777765543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=1.2e-13 Score=127.39 Aligned_cols=161 Identities=14% Similarity=0.152 Sum_probs=124.6
Q ss_pred CCCccEEECCCCcccCCcchhHHhh----hccccEEEcCCCcccCCCchh-hhccCCCeEEEccCccccCcccccc----
Q 046000 303 SNQLKELDMSNNMLSGHIPHWIANF----SSYLEVLLMSKNFLKGNIPMQ-LLNHGSLQLLSVSENCLSGFMTSSF---- 373 (470)
Q Consensus 303 ~~~L~~L~l~~~~~~~~~~~~~~~~----~~~l~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~---- 373 (470)
.+.++.|++++|.+.......++.. ...++.|++++|.++...... ...+++|+.|++++|.+++.+...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999999875555555554 235999999999986433333 3356789999999999987655443
Q ss_pred --ccCcccEEEccCCccccc----CccchhcCCCccEEEcCCccceee----cchhhhcCCCCcEEEccCcccCcc----
Q 046000 374 --SLSSLVHLYVQRNDLSGT----IPNALFRSSKLMTLDLRDNGFSGI----ISDQINESSNLRVLLLRGNYLEGP---- 439 (470)
Q Consensus 374 --~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~---- 439 (470)
..++|++|++++|.+++. ++.++..+++|++|+|++|.+.+. +...+..+++|++|+|++|.|++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 358899999999999753 334557789999999999998753 355677889999999999999863
Q ss_pred cchhhccCCCCCeEEccCcccccc
Q 046000 440 ISNQFCQLRRLGVMDLSHNRINGS 463 (470)
Q Consensus 440 ~~~~~~~l~~L~~l~l~~n~~~~~ 463 (470)
++..+...+.|+.|++++|+|+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHH
Confidence 445566789999999999999753
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.37 E-value=5.6e-11 Score=111.24 Aligned_cols=112 Identities=12% Similarity=0.189 Sum_probs=91.1
Q ss_pred CchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcC
Q 046000 345 IPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINES 423 (470)
Q Consensus 345 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~ 423 (470)
...+|..|..|+.+.+.... ..++...+ .++.|+.+.+. +.+..+...+|.+|.+|+.++|.++ ++.+-...|.+|
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ccceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 34568889999999997643 34555555 78999999996 4555566788999999999999876 665667889999
Q ss_pred CCCcEEEccCcccCcccchhhccCCCCCeEEccCccc
Q 046000 424 SNLRVLLLRGNYLEGPISNQFCQLRRLGVMDLSHNRI 460 (470)
Q Consensus 424 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~l~l~~n~~ 460 (470)
.+|+++.+..+ ++.....+|.+|++|+.+++.++..
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 99999999765 7767788999999999999998754
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=3e-12 Score=104.41 Aligned_cols=105 Identities=20% Similarity=0.251 Sum_probs=63.0
Q ss_pred ccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCC
Q 046000 331 LEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD 409 (470)
Q Consensus 331 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 409 (470)
.+.++++++.++ .+|..+ .+.++.|++++|.++.+++..+ .+++|++|++++|++.+..+..+..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345555555554 344433 2566666666666666655444 566666666666666655555556666666666666
Q ss_pred ccceeecchhhhcCCCCcEEEccCcccCc
Q 046000 410 NGFSGIISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
|++....++.+..+++|++|+|++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 66665555556666666666666666653
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=5.2e-12 Score=103.31 Aligned_cols=103 Identities=22% Similarity=0.223 Sum_probs=48.6
Q ss_pred cEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccC
Q 046000 307 KELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQR 385 (470)
Q Consensus 307 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~ 385 (470)
+.++++++.+. .+|..+. ..++.|++++|.+.+..+..+..+++|+.|++++|.++.++...+ .+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45555555554 3443221 224555555555544444444445555555555555554444433 344555555555
Q ss_pred CcccccCccchhcCCCccEEEcCCccce
Q 046000 386 NDLSGTIPNALFRSSKLMTLDLRDNGFS 413 (470)
Q Consensus 386 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~ 413 (470)
|.+....+..+..+++|+.|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 5554333333444455555555555443
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.25 E-value=8.6e-10 Score=102.69 Aligned_cols=303 Identities=11% Similarity=0.036 Sum_probs=138.7
Q ss_pred cccccCcccEEEccCccccCccchHhhhcCCCCcEEEccccccCCccCCCCCCCCcccEEeccCCcccCCCCcchhhhhc
Q 046000 129 TFQLKHDLKYLDLSHNNLAGDFPAWILQNNTKLEVLCLTNNSFTGNLQLPHSKHDFLHHLDVSSNNFTGKLPQDKGIILQ 208 (470)
Q Consensus 129 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 208 (470)
.+....+|+.+.+... ++ .++...|.++.+|+.+.+..+ ++.....++..+ .|+.+.+..+ +. .+....|.. .
T Consensus 41 ~~~~~~~i~~v~ip~~-vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~ 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-IT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-T 113 (379)
T ss_dssp TGGGGGGCSEEEECTT-EE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-C
T ss_pred ccccccCCEEEEeCCC-cc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-C
Confidence 3444455666666433 33 555556666666666666432 443444455444 4555554332 22 333333432 3
Q ss_pred cCceeeccCCccCCCCchhhcCCCCccEEEccccccccccCccccCCCcccEEecCCCcCCCc------------chhhh
Q 046000 209 KLLYIDMANNRFEGNLPSSIGDMKTLTFLHLSKNNFSGELSTLFTGCVSLWFLDRSHNNFHDQ------------IFPKY 276 (470)
Q Consensus 209 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------~~~~~ 276 (470)
+|+.+.+..+-.. .....|... +++.+.+..+ +.......+..+..++...+........ ....+
T Consensus 114 ~L~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (379)
T 4h09_A 114 DLDDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESY 190 (379)
T ss_dssp CCSEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEEC
T ss_pred CcccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccc
Confidence 5666666543211 222334333 3444444332 2334445556666666665554322110 01112
Q ss_pred cCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhhccCCCe
Q 046000 277 MNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQ 356 (470)
Q Consensus 277 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~ 356 (470)
.....+..+.+.... .......+..+..++.+.+..+- .......+.... .++.+.+..+ ++......+..+..|+
T Consensus 191 ~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~-~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 191 PAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSGV-TTLGDGAFYGMK-ALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTTC-CEECTTTTTTCS-SCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred cccccccccccccce-eEEeecccccccccceeeeccce-eEEccccccCCc-cceEEEcCCC-ccEeCccccceeehhc
Confidence 223333333332221 11223344455566666654431 101111222222 2555555443 2222334455556666
Q ss_pred EEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcc
Q 046000 357 LLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY 435 (470)
Q Consensus 357 ~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 435 (470)
.+.+.. .+..++...+ .+++|+++.+.++.+..+...+|.+|.+|+.+.|.++ ++.+-...|.+|++|+++.+..+
T Consensus 267 ~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~- 343 (379)
T 4h09_A 267 TLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS- 343 (379)
T ss_dssp EEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred cccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence 666543 2444444444 4566666666655555444555666666666666543 44344445566666666666443
Q ss_pred cCcccchhhccCC
Q 046000 436 LEGPISNQFCQLR 448 (470)
Q Consensus 436 i~~~~~~~~~~l~ 448 (470)
++.....+|.+++
T Consensus 344 v~~I~~~aF~~c~ 356 (379)
T 4h09_A 344 ITLIESGAFEGSS 356 (379)
T ss_dssp CCEECTTTTTTSS
T ss_pred cCEEchhHhhCCC
Confidence 4434444555543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.20 E-value=5e-11 Score=109.65 Aligned_cols=102 Identities=23% Similarity=0.294 Sum_probs=58.9
Q ss_pred EEEcCCC-cccCCCchhhhccCCCeEEEccC-ccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCC
Q 046000 333 VLLMSKN-FLKGNIPMQLLNHGSLQLLSVSE-NCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRD 409 (470)
Q Consensus 333 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 409 (470)
.++++++ .++ .+|. +..+++|+.|+|++ |.+..++...+ .+++|++|+|++|.+.+..+..|..+++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 554 3555 55566666666664 66666555444 556666666666666655555566666666666666
Q ss_pred ccceeecchhhhcCCCCcEEEccCcccC
Q 046000 410 NGFSGIISDQINESSNLRVLLLRGNYLE 437 (470)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~l~~n~i~ 437 (470)
|++....+..+..++ |+.|+|.+|++.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 666644444444333 666666666655
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=1.2e-10 Score=107.16 Aligned_cols=102 Identities=22% Similarity=0.210 Sum_probs=55.7
Q ss_pred EEccCc-cccCccccccccCcccEEEccC-CcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCcc
Q 046000 358 LSVSEN-CLSGFMTSSFSLSSLVHLYVQR-NDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNY 435 (470)
Q Consensus 358 L~l~~~-~l~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 435 (470)
++++++ .+..+|. ...+++|++|+|++ |.+....+..|..+++|+.|+|++|++.+..+..|.++++|+.|+|++|+
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 5555555 33455555555554 55554444555555555555555555555555555555555555555555
Q ss_pred cCcccchhhccCCCCCeEEccCcccc
Q 046000 436 LEGPISNQFCQLRRLGVMDLSHNRIN 461 (470)
Q Consensus 436 i~~~~~~~~~~l~~L~~l~l~~n~~~ 461 (470)
++...+..+..++ |+.|++.+|+++
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 5544444444443 555555555555
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.05 E-value=1.4e-08 Score=94.53 Aligned_cols=169 Identities=11% Similarity=0.077 Sum_probs=117.1
Q ss_pred ccCCCcccEEecCCCcCCCcchhhhcCcccccEEEccccccccccchhhcCCCCccEEECCCCcccCCcchhHHhhhccc
Q 046000 252 FTGCVSLWFLDRSHNNFHDQIFPKYMNLTRLWFLYLDNNKFSGKIEDGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYL 331 (470)
Q Consensus 252 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 331 (470)
+..+..+..+.+.... .......+..+.+++.+.+..+ +.......+..+..|+.+.+..+ +. .+....+.....+
T Consensus 190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l 265 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTAL 265 (379)
T ss_dssp CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTC
T ss_pred ccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehh
Confidence 3344555555544321 2223345566788888888654 33355667888999999999876 33 3333333333338
Q ss_pred cEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc-ccCcccEEEccCCcccccCccchhcCCCccEEEcCCc
Q 046000 332 EVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDN 410 (470)
Q Consensus 332 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n 410 (470)
+.+.+..+ +.......|..|.+|+.+.+.++.++.++...| .+.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.++
T Consensus 266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 88888654 333445678899999999999998988888888 7899999999754 65566789999999999999776
Q ss_pred cceeecchhhhcCCCCc
Q 046000 411 GFSGIISDQINESSNLR 427 (470)
Q Consensus 411 ~l~~~~~~~~~~~~~L~ 427 (470)
++.+-...|.++..++
T Consensus 344 -v~~I~~~aF~~c~~~~ 359 (379)
T 4h09_A 344 -ITLIESGAFEGSSITK 359 (379)
T ss_dssp -CCEECTTTTTTSSCCC
T ss_pred -cCEEchhHhhCCCCCc
Confidence 6656667787775443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.04 E-value=4.1e-10 Score=102.86 Aligned_cols=156 Identities=15% Similarity=0.164 Sum_probs=94.3
Q ss_pred hhhcCCCCccEEECCCCcccCCcchhHHhhhccccEEEcCCCcccCCCchhhh--ccCCCeEEEccCc--cc------cC
Q 046000 298 DGLLKSNQLKELDMSNNMLSGHIPHWIANFSSYLEVLLMSKNFLKGNIPMQLL--NHGSLQLLSVSEN--CL------SG 367 (470)
Q Consensus 298 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~l------~~ 367 (470)
..+..+|+|+.|.++++.-. .++. + .. .+|+.|.+..|.+.......+. .+++|+.|+|+.+ .. ..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 33455666777776665211 1222 1 12 2377777776665433333333 5788888887531 11 11
Q ss_pred ccccc--cccCcccEEEccCCcccccCccchh---cCCCccEEEcCCccceee----cchhhhcCCCCcEEEccCcccCc
Q 046000 368 FMTSS--FSLSSLVHLYVQRNDLSGTIPNALF---RSSKLMTLDLRDNGFSGI----ISDQINESSNLRVLLLRGNYLEG 438 (470)
Q Consensus 368 ~~~~~--~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~i~~ 438 (470)
+.... ..+|+|++|++.+|.+.+.....+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.+++
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 11111 1478999999988888754433332 468899999999988753 34445677899999999998886
Q ss_pred ccchhhcc-CCCCCeEEccCcc
Q 046000 439 PISNQFCQ-LRRLGVMDLSHNR 459 (470)
Q Consensus 439 ~~~~~~~~-l~~L~~l~l~~n~ 459 (470)
.....+.. + ...+++++++
T Consensus 322 ~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHc--CCEEEecCCc
Confidence 55555554 3 3467887776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=2.8e-09 Score=97.33 Aligned_cols=139 Identities=13% Similarity=0.128 Sum_probs=95.3
Q ss_pred cchhHHhhhccccEEEcCCCcccCCCchhhhccCCCeEEEccCccccCcccccc---ccCcccEEEccC--Cccccc---
Q 046000 320 IPHWIANFSSYLEVLLMSKNFLKGNIPMQLLNHGSLQLLSVSENCLSGFMTSSF---SLSSLVHLYVQR--NDLSGT--- 391 (470)
Q Consensus 320 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~L~~L~l~~--~~l~~~--- 391 (470)
+...+...+ .|+.|.+.+|.-. ..+. + ..++|++|++..+.+........ .+|+|++|+|+. +...+.
T Consensus 164 L~~ll~~~P-~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 164 LSPVLDAMP-LLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp CHHHHHTCT-TCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHHHhcCC-CCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 334444445 4999999887411 2222 3 37899999999988765443222 589999999863 211111
Q ss_pred --Cccch--hcCCCccEEEcCCccceeecchhhh---cCCCCcEEEccCcccCccc----chhhccCCCCCeEEccCccc
Q 046000 392 --IPNAL--FRSSKLMTLDLRDNGFSGIISDQIN---ESSNLRVLLLRGNYLEGPI----SNQFCQLRRLGVMDLSHNRI 460 (470)
Q Consensus 392 --~~~~l--~~~~~L~~L~l~~n~l~~~~~~~~~---~~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~l~l~~n~~ 460 (470)
+...+ ..+|+|+.|++++|++.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.+
T Consensus 240 ~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 240 NVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 11122 2579999999999998754333332 5789999999999998743 44456679999999999998
Q ss_pred cc
Q 046000 461 NG 462 (470)
Q Consensus 461 ~~ 462 (470)
+.
T Consensus 320 ~d 321 (362)
T 2ra8_A 320 SD 321 (362)
T ss_dssp CH
T ss_pred CH
Confidence 74
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.86 E-value=1.2e-09 Score=90.12 Aligned_cols=115 Identities=12% Similarity=0.116 Sum_probs=73.0
Q ss_pred hhhhccCCCeEEEccCc-cccCcccccc-----ccCcccEEEccCCcccccC----ccchhcCCCccEEEcCCccceee-
Q 046000 347 MQLLNHGSLQLLSVSEN-CLSGFMTSSF-----SLSSLVHLYVQRNDLSGTI----PNALFRSSKLMTLDLRDNGFSGI- 415 (470)
Q Consensus 347 ~~~~~~~~L~~L~l~~~-~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~- 415 (470)
..+...+.|++|++++| .+.+...... ..++|++|++++|.+.+.. ...+...++|++|+|++|.+.+.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455667777777777 6654332222 3567777777777776432 23444557777777777777543
Q ss_pred ---cchhhhcCCCCcEEEc--cCcccCcc----cchhhccCCCCCeEEccCcccc
Q 046000 416 ---ISDQINESSNLRVLLL--RGNYLEGP----ISNQFCQLRRLGVMDLSHNRIN 461 (470)
Q Consensus 416 ---~~~~~~~~~~L~~L~l--~~n~i~~~----~~~~~~~l~~L~~l~l~~n~~~ 461 (470)
+...+...++|++|+| ++|.|... +.+.+...++|+.|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566677888888 77777653 3445555677888888877764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.75 E-value=4.2e-09 Score=86.82 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=67.0
Q ss_pred cccccCCCcCceeeccCC-CCCCccccccccccccccccCCCCchHhhhcCCCCcEEEccCCccccc----cchhhhcCc
Q 046000 5 GAGLHKLKNLEALDLSFN-NINGTVESQESFELNLAKNNIGGHLLDCLNNMTRLKVLDTSFNQLSGS----LPSVIVNLA 79 (470)
Q Consensus 5 ~~~l~~~~~L~~L~ls~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~----~~~~~~~l~ 79 (470)
...+...++|++|+|++| .+.+... ..+..++...++|++|+|++|.+.+. +.+.+...+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~---------------~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~ 93 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTL---------------KACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN 93 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHH---------------HHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHH---------------HHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCC
Confidence 345556666666666666 5542111 01333445556666666666665532 233344455
Q ss_pred CCcEEeccCccCcCccC---hhhhccccccceecc--cCCCCccccccccCCCCcccccCcccEEEccCcccc
Q 046000 80 SVEYLDLSNSYFEGTFP---ISSLANHSKLKVLRL--SSRNNNMLQLKTENFLPTFQLKHDLKYLDLSHNNLA 147 (470)
Q Consensus 80 ~L~~L~l~~~~~~~~~~---~~~l~~~~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 147 (470)
.|++|++++|.+.+... ...+...++|++|++ ++|.+.... ...+...+...++|++|++++|.+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g--~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV--EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH--HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHH--HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 66666666666653211 133445556666666 555443211 1123334555577888888888765
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.74 E-value=5e-09 Score=83.83 Aligned_cols=82 Identities=6% Similarity=-0.046 Sum_probs=38.8
Q ss_pred cccEEEccCCcccccCccchhcCCCccEEEcCCcc-ceeecchhhhcC----CCCcEEEccCcc-cCcccchhhccCCCC
Q 046000 377 SLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNG-FSGIISDQINES----SNLRVLLLRGNY-LEGPISNQFCQLRRL 450 (470)
Q Consensus 377 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~~----~~L~~L~l~~n~-i~~~~~~~~~~l~~L 450 (470)
.|++|++++|.+++.....+..+++|+.|+|++|. +++.-...+..+ ++|++|+|++|. |++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544444444455555555555553 333222223321 245555555553 444444444455555
Q ss_pred CeEEccCc
Q 046000 451 GVMDLSHN 458 (470)
Q Consensus 451 ~~l~l~~n 458 (470)
+.|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 55555555
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.50 E-value=4.7e-08 Score=78.18 Aligned_cols=86 Identities=10% Similarity=0.183 Sum_probs=62.4
Q ss_pred CCCeEEEccCccccCcccccc-ccCcccEEEccCCc-ccccCccchhcC----CCccEEEcCCcc-ceeecchhhhcCCC
Q 046000 353 GSLQLLSVSENCLSGFMTSSF-SLSSLVHLYVQRND-LSGTIPNALFRS----SKLMTLDLRDNG-FSGIISDQINESSN 425 (470)
Q Consensus 353 ~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~-l~~~~~~~l~~~----~~L~~L~l~~n~-l~~~~~~~~~~~~~ 425 (470)
..|+.||+++|.+++.+.... .+++|++|+|++|. +++.....+..+ ++|+.|++++|. +++.-...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888888776655544 68888888888885 666555556553 578888888885 76655556777888
Q ss_pred CcEEEccCcc-cCc
Q 046000 426 LRVLLLRGNY-LEG 438 (470)
Q Consensus 426 L~~L~l~~n~-i~~ 438 (470)
|++|++++|+ +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 8888888886 553
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=3.6e-08 Score=85.23 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=55.6
Q ss_pred ccCcccEEEccCCccccc--CccchhcCCCccEEEcCCccceeecchhhhcCC--CCcEEEccCcccCcccc-------h
Q 046000 374 SLSSLVHLYVQRNDLSGT--IPNALFRSSKLMTLDLRDNGFSGIISDQINESS--NLRVLLLRGNYLEGPIS-------N 442 (470)
Q Consensus 374 ~~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~l~~n~i~~~~~-------~ 442 (470)
.+++|++|+|++|++.+. ++..+..+++|+.|+|++|++.+. +.+..+. +|++|+|++|++.+..| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 467777888887777753 335566778888888888888754 2344444 88888888888875444 3
Q ss_pred hhccCCCCCeEE
Q 046000 443 QFCQLRRLGVMD 454 (470)
Q Consensus 443 ~~~~l~~L~~l~ 454 (470)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467788888775
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=6.5e-08 Score=83.62 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=42.5
Q ss_pred hcCCCCcEEEccCCcccc--ccchhhhcCcCCcEEeccCccCcCccChhhhccccccceecccCCCCc
Q 046000 52 NNMTRLKVLDTSFNQLSG--SLPSVIVNLASVEYLDLSNSYFEGTFPISSLANHSKLKVLRLSSRNNN 117 (470)
Q Consensus 52 ~~~~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 117 (470)
.++++|++|+|++|.+.+ .+++.+..+++|++|+|++|.+.+......+..+ +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 567777777777777765 3345666777777777777777644222233333 7777777777654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.97 E-value=4e-06 Score=68.37 Aligned_cols=109 Identities=10% Similarity=0.071 Sum_probs=57.9
Q ss_pred ccCCCeEEEccCc-cccCcccccc-----ccCcccEEEccCCcccccCc----cchhcCCCccEEEcCCccceee----c
Q 046000 351 NHGSLQLLSVSEN-CLSGFMTSSF-----SLSSLVHLYVQRNDLSGTIP----NALFRSSKLMTLDLRDNGFSGI----I 416 (470)
Q Consensus 351 ~~~~L~~L~l~~~-~l~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~----~~l~~~~~L~~L~l~~n~l~~~----~ 416 (470)
.-+.|+.|+++++ .+.+.+.... ..+.|++|+|++|.+.+... +++..-++|++|+|++|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666653 5443322221 34566666666666654322 3333446666666666666432 2
Q ss_pred chhhhcCCCCcEEEccCc---ccCc----ccchhhccCCCCCeEEccCcc
Q 046000 417 SDQINESSNLRVLLLRGN---YLEG----PISNQFCQLRRLGVMDLSHNR 459 (470)
Q Consensus 417 ~~~~~~~~~L~~L~l~~n---~i~~----~~~~~~~~l~~L~~l~l~~n~ 459 (470)
.+.+..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 233444556777777654 3332 244455555667777666554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.86 E-value=4.5e-06 Score=68.06 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=26.5
Q ss_pred chHhhhcCCCCcEEEccCCccccc----cchhhhcCcCCcEEeccCccCc
Q 046000 47 LLDCLNNMTRLKVLDTSFNQLSGS----LPSVIVNLASVEYLDLSNSYFE 92 (470)
Q Consensus 47 ~~~~~~~~~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~ 92 (470)
+.+++..-+.|+.|+|++|.|.+. +.+++..-+.|++|+|++|.+.
T Consensus 62 la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 344455556666666666666533 2333445566666666666665
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.84 E-value=0.0016 Score=49.45 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=38.5
Q ss_pred EEEccCcccc--CccccccccCcccEEEccCCcccccCccchhcCCCccEEEcCCccc
Q 046000 357 LLSVSENCLS--GFMTSSFSLSSLVHLYVQRNDLSGTIPNALFRSSKLMTLDLRDNGF 412 (470)
Q Consensus 357 ~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~n~l 412 (470)
.++.+++.++ .+|... .++|++|+|++|.++.+.+..|..+++|+.|+|++|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 6777777776 666543 34677888888887766666677777777777777776
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.83 E-value=0.002 Score=48.86 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=20.4
Q ss_pred CCccEEEcCCccceeecchhhhcCCCCcEEEccCcccC
Q 046000 400 SKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGNYLE 437 (470)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~i~ 437 (470)
++|+.|+|++|+++...++.|..+++|++|+|++|++.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 34555555555555444445555555555555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=78.10 E-value=1.4 Score=31.15 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=30.1
Q ss_pred cCCCCchHhhhcCCCCcEEEccCCccccccchhhhcCcCCcEEeccCc
Q 046000 42 NIGGHLLDCLNNMTRLKVLDTSFNQLSGSLPSVIVNLASVEYLDLSNS 89 (470)
Q Consensus 42 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 89 (470)
.++.+-..+|.+|..|+.+.|..+ ++.+...+|..|.+|+.+.+...
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344455566777777777777765 44355566777777777766554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=72.80 E-value=5.1 Score=28.21 Aligned_cols=49 Identities=12% Similarity=0.225 Sum_probs=37.1
Q ss_pred CCcccccCccchhcCCCccEEEcCCccceeecchhhhcCCCCcEEEccCc
Q 046000 385 RNDLSGTIPNALFRSSKLMTLDLRDNGFSGIISDQINESSNLRVLLLRGN 434 (470)
Q Consensus 385 ~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 434 (470)
+..++.+...+|.+|.+|+.+.|..+ ++.+-...|.+|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34555566678889999999998876 44455677888999999988765
Done!