BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046001
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P09444|LEA34_GOSHI Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4
SV=1
Length = 264
Score = 274 bits (701), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 162/265 (61%), Positives = 196/265 (73%), Gaps = 16/265 (6%)
Query: 1 MSQEQPRRP------------IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQK 48
MSQ QPRRP IKYGDVF+V GE+A +AP+DAA+MQTAE +LGQ QK
Sbjct: 1 MSQGQPRRPQQPAGQGENQEPIKYGDVFNVSGELANKPIAPQDAAMMQTAETQVLGQTQK 60
Query: 49 GTAASMMQSAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYS 108
G A++MQ+AA RNE+ G VGH+D+ D+A QGV++ ET++ GRRIITE + GQVVGQY
Sbjct: 61 GGTAAVMQAAATRNEQVGVVGHNDITDIAGEQGVTLAETDVAGRRIITEAVAGQVVGQYV 120
Query: 109 QPSSLQSLAPPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRIN 168
Q + + + S G V ITIGEALEATA TAG KPV+ SDAAA+QAAEVRATG
Sbjct: 121 QATPVMT----SQVGVVLQNAITIGEALEATAKTAGDKPVDQSDAAAVQAAEVRATGSNV 176
Query: 169 ITPGGVAAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMR 228
I PGG+AA AQSAA NA RDE+K KL +LT ATAKLPADK VTR+DAEGV +AE+R
Sbjct: 177 IIPGGLAATAQSAAAHNATLDRDEEKIKLNQVLTGATAKLPADKAVTRQDAEGVVSAELR 236
Query: 229 NDPMLTTHPAGVAASVAAAARLNQS 253
N+P + THP GVAAS+AAAARLN++
Sbjct: 237 NNPNVATHPGGVAASMAAAARLNEN 261
>sp|Q6L1F6|GLYA_PICTO Serine hydroxymethyltransferase OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=glyA PE=3 SV=1
Length = 433
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 18/123 (14%)
Query: 98 EIGGQVVGQYSQPSSLQSLAPPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQ 157
E G V+G+ + + +LA S GGG + E LE + + K + W D Q
Sbjct: 304 EFGFNVLGEKNGFTRSHTLAVDVSK---NGGGRKVAENLEKSGIILNKNLLPWDDNKNSQ 360
Query: 158 AAEVRATGRINITPGGVAAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRK 217
P G+ Q I ++D T+LA+IL DA ++ R+
Sbjct: 361 ------------NPSGIRIGVQEITRIGF---MEDDVTELAEILRDAVINEKPVNEIRRR 405
Query: 218 DAE 220
E
Sbjct: 406 ALE 408
>sp|Q64214|EF1B_SULSO Elongation factor 1-beta OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=ef1b PE=1 SV=3
Length = 91
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 191 DEDKTKLADILTDATAKLPADKQVTRKDAEGVA 223
D D+ L ++ TD ++KLP + ++ RK+ E +A
Sbjct: 13 DSDEVNLDNLYTDISSKLPKEYKIIRKETEPIA 45
>sp|B1I1D1|ARLY_DESAP Argininosuccinate lyase OS=Desulforudis audaxviator (strain MP104C)
GN=argH PE=3 SV=1
Length = 459
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 15/65 (23%)
Query: 40 NAMLGQIQKGTAASMMQSAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEI 99
AM+G + S + A +R +GGF D+AD AG+GV E + EI
Sbjct: 343 TAMIGTV------SFREQAMDRAVRGGFTNATDLADYLAGRGVPFREAH---------EI 387
Query: 100 GGQVV 104
G++V
Sbjct: 388 VGEIV 392
>sp|Q8QFR2|HIRA_XENLA Protein HIRA OS=Xenopus laevis GN=hira PE=1 SV=2
Length = 1013
Score = 32.0 bits (71), Expect = 4.8, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 118 PPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPG--GVA 175
P + G ++ + T++TA K ++A + R T R T G GVA
Sbjct: 528 PAEETANKESGNVSSSSPVAPTSITAQPK------IEPMKALDSRFTERSKATSGTAGVA 581
Query: 176 AAAQSAAT-INARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVA 223
Q+A + + + K ++ + +D+ K+PA KQ++++ E A
Sbjct: 582 HLNQTAVDRLKEQNVTKDSKPRVVESSSDSEEKIPASKQLSKRKGEADA 630
>sp|Q65RQ2|SYI_MANSM Isoleucine--tRNA ligase OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=ileS PE=3 SV=1
Length = 938
Score = 31.6 bits (70), Expect = 5.1, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 133 GEALEATALTAGKKPVEW--SDAAAIQAAEVRATGRINITPGGVAAAAQSAATINARTTR 190
G+A+ L G KPV W A+++ AEV R + + AAA +A N
Sbjct: 177 GKAVANGHLYKGSKPVHWCLDCASSLAEAEVEYEDRTSPSIYVRFAAADESAVENKFVLT 236
Query: 191 DEDKTKLADILTDATA-KLPADKQVT 215
++ K KL+ ++ T LP++K ++
Sbjct: 237 EQGKGKLSAVIWTTTPWTLPSNKAIS 262
>sp|Q73KH5|CUTC_TREDE Copper homeostasis protein CutC OS=Treponema denticola (strain ATCC
35405 / CIP 103919 / DSM 14222) GN=cutC PE=3 SV=1
Length = 246
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 140 ALTAGKKPVEWSDAAAIQAAEVRATGRINITPGG 173
LT+G++P + A I RA GRI I PGG
Sbjct: 147 VLTSGQEPTAYEGADLIAKMVKRAKGRIEILPGG 180
>sp|O87389|GLXA_RHIME HTH-type transcriptional regulator GlxA OS=Rhizobium meliloti
(strain 1021) GN=glxA PE=4 SV=1
Length = 324
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 133 GEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVAAAAQSAATINARTTRD 191
GE+ + AG +P +W+D +A +R R+ I GG+++ A A RD
Sbjct: 74 GESCHTVFVCAGGEPTDWADTSASHTT-LRRLSRLGIRIGGISSGAFVLAAAGLLDNRD 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.123 0.331
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,667,098
Number of Sequences: 539616
Number of extensions: 3215825
Number of successful extensions: 9303
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 9260
Number of HSP's gapped (non-prelim): 74
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)