Query 046001
Match_columns 256
No_of_seqs 111 out of 120
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 13:16:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cgi_A Propanediol utilization 77.9 1.3 4.3E-05 36.0 2.7 22 92-113 8-30 (124)
2 1hx6_A Protein P3, major capsi 58.2 2.6 8.9E-05 38.7 0.6 12 9-20 137-148 (394)
3 2egj_A Hypothetical protein AQ 20.9 34 0.0012 24.3 1.2 16 8-23 65-80 (128)
4 2eis_A Hypothetical protein TT 20.6 35 0.0012 24.8 1.2 17 7-23 57-73 (133)
5 2gf6_A Conserved hypothetical 16.3 50 0.0017 23.8 1.2 17 7-23 68-84 (135)
6 2pzh_A Hypothetical protein HP 16.1 51 0.0017 23.9 1.2 17 7-23 59-75 (135)
7 1lo7_A 4-hydroxybenzoyl-COA th 15.6 54 0.0018 23.8 1.2 16 8-23 70-85 (141)
8 1s5u_A Protein YBGC; structura 15.5 54 0.0018 23.7 1.2 16 8-23 70-85 (138)
9 2fuj_A Conserved hypothetical 15.5 51 0.0018 24.0 1.1 16 8-23 70-85 (137)
10 2cye_A TTHA1846, putative thio 15.4 54 0.0019 23.6 1.2 16 8-23 64-79 (133)
No 1
>3cgi_A Propanediol utilization protein PDUU; circular permutation, beta barrel, bacterial microcompartmen propanediol, signaling protein; 1.80A {Salmonella typhimurium}
Probab=77.93 E-value=1.3 Score=36.03 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=19.5
Q ss_pred ceeEeeeecc-eeeeeeecCCCc
Q 046001 92 RRIITEEIGG-QVVGQYSQPSSL 113 (256)
Q Consensus 92 ~RivTE~VaG-Qvvgq~~~p~~~ 113 (256)
-|||+|||+| |++..++-|.|.
T Consensus 8 ~r~i~e~V~gkqv~~~~VIan~~ 30 (124)
T 3cgi_A 8 DRMIQEYVPGKQVTLAHLIANPG 30 (124)
T ss_dssp CEEEEEECCCCEEEEEEEESSCC
T ss_pred eeEEEeeeCCEEEEEeeeeCCCC
Confidence 5999999997 999999998774
No 2
>1hx6_A Protein P3, major capsid protein; bacteriophage PRD1, coat protein, jelly roll, viral beta barrel, viral protein; 1.65A {Enterobacteria phage PRD1} SCOP: b.121.2.1 b.121.2.1 PDB: 1gw7_A 1gw8_A 1hb5_A 1hb7_A 1hb9_A 1hqn_A 1cjd_A 1w8x_A
Probab=58.22 E-value=2.6 Score=38.67 Aligned_cols=12 Identities=67% Similarity=1.126 Sum_probs=10.6
Q ss_pred CCccCceeeccc
Q 046001 9 PIKYGDVFSVEG 20 (256)
Q Consensus 9 pi~Ygdvf~v~g 20 (256)
|||||||.||-.
T Consensus 137 pikygdvmnvid 148 (394)
T 1hx6_A 137 PIKYGDVMNVID 148 (394)
T ss_dssp SSCCBSSSCSSB
T ss_pred Cccccceeeecc
Confidence 999999999853
No 3
>2egj_A Hypothetical protein AQ_1494; structural genomics; 1.80A {Aquifex aeolicus} PDB: 2egi_A 2egr_A
Probab=20.90 E-value=34 Score=24.31 Aligned_cols=16 Identities=38% Similarity=0.752 Sum_probs=13.0
Q ss_pred CCCccCceeecccccc
Q 046001 8 RPIKYGDVFSVEGEIA 23 (256)
Q Consensus 8 rpi~Ygdvf~v~g~la 23 (256)
||++|||.+.|...+.
T Consensus 65 ~~~~~gd~v~v~~~v~ 80 (128)
T 2egj_A 65 KPLFYDDVFEVHLNLE 80 (128)
T ss_dssp SCCCTTCEEEEEEEEE
T ss_pred CCCcCCCEEEEEEEEE
Confidence 5999999998887764
No 4
>2eis_A Hypothetical protein TTHB207; COA binding motif, NPPSFA, national project on protein struc functional analyses; HET: COA; 2.10A {Thermus thermophilus}
Probab=20.63 E-value=35 Score=24.81 Aligned_cols=17 Identities=18% Similarity=0.597 Sum_probs=13.0
Q ss_pred CCCCccCceeecccccc
Q 046001 7 RRPIKYGDVFSVEGEIA 23 (256)
Q Consensus 7 ~rpi~Ygdvf~v~g~la 23 (256)
+||++|||.+.+.+.+-
T Consensus 57 ~~pv~~gd~l~v~~~v~ 73 (133)
T 2eis_A 57 KRPVPLGAIVELVARLK 73 (133)
T ss_dssp CSCCBTTCEEEEEEEEE
T ss_pred cccccCCCEEEEEEEEE
Confidence 35888898888877664
No 5
>2gf6_A Conserved hypothetical protein; putative thioesterase, structural genomics, joint center for structural genomics, JCSG; HET: COA; 1.91A {Sulfolobus solfataricus} SCOP: d.38.1.1
Probab=16.34 E-value=50 Score=23.82 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=13.1
Q ss_pred CCCCccCceeecccccc
Q 046001 7 RRPIKYGDVFSVEGEIA 23 (256)
Q Consensus 7 ~rpi~Ygdvf~v~g~la 23 (256)
+||++|||.+.|...+.
T Consensus 68 ~~~~~~gd~v~v~~~v~ 84 (135)
T 2gf6_A 68 HRPVKLGDKLTVLLNPK 84 (135)
T ss_dssp CSCCCTTCEEEEEEEEE
T ss_pred CCCCcCCCEEEEEEEEE
Confidence 35899999888877664
No 6
>2pzh_A Hypothetical protein HP_0496; lipid, acyl-COA, bacterial membrane, TOL-PAL system, thioest hot-DOG fold, hydrolase; 1.70A {Helicobacter pylori}
Probab=16.14 E-value=51 Score=23.88 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=12.7
Q ss_pred CCCCccCceeecccccc
Q 046001 7 RRPIKYGDVFSVEGEIA 23 (256)
Q Consensus 7 ~rpi~Ygdvf~v~g~la 23 (256)
+||++|||.+.|...+.
T Consensus 59 ~~~~~~gd~v~v~~~v~ 75 (135)
T 2pzh_A 59 FTPASLGQVLEIRTQIK 75 (135)
T ss_dssp CSCCBTTCEEEEEEEEE
T ss_pred ccccccCCEEEEEEEEE
Confidence 35889999888876653
No 7
>1lo7_A 4-hydroxybenzoyl-COA thioesterase; hot DOG fold, catalytic mechanism, hydrolase; HET: 4CO; 1.50A {Pseudomonas SP} SCOP: d.38.1.1 PDB: 1bvq_A* 1lo8_A* 1lo9_A*
Probab=15.58 E-value=54 Score=23.85 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=12.2
Q ss_pred CCCccCceeecccccc
Q 046001 8 RPIKYGDVFSVEGEIA 23 (256)
Q Consensus 8 rpi~Ygdvf~v~g~la 23 (256)
||++|||.+.|...+.
T Consensus 70 ~p~~~gd~v~v~~~v~ 85 (141)
T 1lo7_A 70 CTASYDDVLTIETCIK 85 (141)
T ss_dssp SCCCTTCEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEE
Confidence 5889999888776653
No 8
>1s5u_A Protein YBGC; structural genomics, hypothetical protein, thioesterase fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: d.38.1.1
Probab=15.52 E-value=54 Score=23.74 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=12.7
Q ss_pred CCCccCceeecccccc
Q 046001 8 RPIKYGDVFSVEGEIA 23 (256)
Q Consensus 8 rpi~Ygdvf~v~g~la 23 (256)
||++|||.+.|...+.
T Consensus 70 ~~~~~gd~v~v~~~v~ 85 (138)
T 1s5u_A 70 APARLDDMLEIQTEIT 85 (138)
T ss_dssp SCCCTTCEEEEEEEEE
T ss_pred CcccCCCEEEEEEEEE
Confidence 5889999888877764
No 9
>2fuj_A Conserved hypothetical protein; structural genomics, conserved hypot protein, hot DOG domain, acyl-COA thioesterase, hydrolase; 1.70A {Xanthomonas campestris PV} SCOP: d.38.1.1
Probab=15.46 E-value=51 Score=24.00 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=12.7
Q ss_pred CCCccCceeecccccc
Q 046001 8 RPIKYGDVFSVEGEIA 23 (256)
Q Consensus 8 rpi~Ygdvf~v~g~la 23 (256)
||++|||.+.|...+.
T Consensus 70 ~~~~~gd~v~v~~~v~ 85 (137)
T 2fuj_A 70 RPLVWPNDILVELFVE 85 (137)
T ss_dssp SCCCTTCCEEEEEEEE
T ss_pred CCccCCCEEEEEEEEE
Confidence 5899999888877654
No 10
>2cye_A TTHA1846, putative thioesterase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: COA; 1.90A {Thermus thermophilus} SCOP: d.38.1.1
Probab=15.39 E-value=54 Score=23.64 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=12.1
Q ss_pred CCCccCceeecccccc
Q 046001 8 RPIKYGDVFSVEGEIA 23 (256)
Q Consensus 8 rpi~Ygdvf~v~g~la 23 (256)
||++|||.+.|...+.
T Consensus 64 ~~~~~gd~l~v~~~v~ 79 (133)
T 2cye_A 64 RPILLGDEVFVGVRTV 79 (133)
T ss_dssp SCCBTTCEEEEEEEEE
T ss_pred ccccCCCEEEEEEEEE
Confidence 5888888888877653
Done!