Query 046001
Match_columns 256
No_of_seqs 111 out of 120
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 13:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046001.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046001hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hx6a1 b.121.2.1 (A:15-244) C 71.5 0.48 3.5E-05 39.0 0.6 12 9-20 124-135 (230)
2 d2fuja1 d.38.1.1 (A:5-122) Hyp 21.7 13 0.00098 25.8 1.0 16 8-23 63-78 (118)
3 d1yeza1 b.40.4.12 (A:1-68) Hyp 15.6 36 0.0026 22.4 2.0 19 1-19 1-20 (68)
4 d1z54a1 d.38.1.1 (A:1-132) Pro 15.4 25 0.0018 24.4 1.2 17 7-23 64-80 (132)
5 d1yvca1 b.40.4.12 (A:1-69) Hyp 15.0 39 0.0028 22.4 2.1 19 1-19 1-22 (69)
6 d2hx5a1 d.38.1.1 (A:1-144) Hyp 14.3 29 0.0021 24.4 1.3 15 8-22 77-91 (144)
7 d2cyea1 d.38.1.1 (A:1-132) Pro 12.0 36 0.0026 23.7 1.2 17 7-23 63-79 (132)
8 d1s7za_ a.159.3.1 (A:) B-form 11.9 13 0.00097 27.7 -1.3 10 9-18 42-51 (106)
9 d2hlja1 d.38.1.1 (A:1-156) Hyp 10.8 39 0.0029 24.2 1.1 16 8-23 67-82 (156)
10 d1s5ua_ d.38.1.1 (A:) Hypothet 10.2 44 0.0032 22.9 1.1 15 8-22 65-79 (129)
No 1
>d1hx6a1 b.121.2.1 (A:15-244) Coat protein p3 {Bacteriophage prd1 [TaxId: 10658]}
Probab=71.52 E-value=0.48 Score=38.98 Aligned_cols=12 Identities=67% Similarity=1.126 Sum_probs=10.7
Q ss_pred CCccCceeeccc
Q 046001 9 PIKYGDVFSVEG 20 (256)
Q Consensus 9 pi~Ygdvf~v~g 20 (256)
|||||||.||-.
T Consensus 124 pikygdvmnvid 135 (230)
T d1hx6a1 124 PIKYGDVMNVID 135 (230)
T ss_dssp SSCCBSSSCSSB
T ss_pred Cccccceeeecc
Confidence 999999999854
No 2
>d2fuja1 d.38.1.1 (A:5-122) Hypothetical protein XCC1147 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=21.72 E-value=13 Score=25.82 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.4
Q ss_pred CCCccCceeecccccc
Q 046001 8 RPIKYGDVFSVEGEIA 23 (256)
Q Consensus 8 rpi~Ygdvf~v~g~la 23 (256)
||++|||.|.|.-.|.
T Consensus 63 ~~~~~~d~v~v~~~~~ 78 (118)
T d2fuja1 63 RPLVWPNDILVELFVE 78 (118)
T ss_dssp SCCCTTCCEEEEEEEE
T ss_pred ccccCCCceEEEEEEE
Confidence 5999999999887664
No 3
>d1yeza1 b.40.4.12 (A:1-68) Hypothetical protein MM1357 {Methanosarcina mazei [TaxId: 2209]}
Probab=15.62 E-value=36 Score=22.44 Aligned_cols=19 Identities=37% Similarity=0.772 Sum_probs=13.9
Q ss_pred CCCCCCCC-CCccCceeecc
Q 046001 1 MSQEQPRR-PIKYGDVFSVE 19 (256)
Q Consensus 1 msq~qp~r-pi~Ygdvf~v~ 19 (256)
|.+..++. |++-|+.+.|+
T Consensus 1 m~r~~~~~~pv~~g~~~~l~ 20 (68)
T d1yeza1 1 MFREESRSVPVEEGEVYDVT 20 (68)
T ss_dssp CCSCCCCCCSCCTTEEEEEE
T ss_pred CCcccCCCCCcCCCCEEEEE
Confidence 66666665 88888888765
No 4
>d1z54a1 d.38.1.1 (A:1-132) Probable thioesterase TTHA0908 {Thermus thermophilus [TaxId: 274]}
Probab=15.42 E-value=25 Score=24.40 Aligned_cols=17 Identities=35% Similarity=0.784 Sum_probs=13.3
Q ss_pred CCCCccCceeecccccc
Q 046001 7 RRPIKYGDVFSVEGEIA 23 (256)
Q Consensus 7 ~rpi~Ygdvf~v~g~la 23 (256)
+||++|||.|.|.-.+.
T Consensus 64 ~~~~~~~d~i~v~~~v~ 80 (132)
T d1z54a1 64 RAPARFGEVVEVRTRLA 80 (132)
T ss_dssp CSCCCTTCEEEEEEEEE
T ss_pred hhhCCCCcEEEEEEEEE
Confidence 35899999998887764
No 5
>d1yvca1 b.40.4.12 (A:1-69) Hypothetical protein MMP0076 {Methanococcus maripaludis [TaxId: 39152]}
Probab=15.04 E-value=39 Score=22.40 Aligned_cols=19 Identities=26% Similarity=0.567 Sum_probs=13.9
Q ss_pred CCCCCCCC---CCccCceeecc
Q 046001 1 MSQEQPRR---PIKYGDVFSVE 19 (256)
Q Consensus 1 msq~qp~r---pi~Ygdvf~v~ 19 (256)
|...+|+. |++.|+.|.|+
T Consensus 1 ~~~~k~~~~~~pvk~g~~~~v~ 22 (69)
T d1yvca1 1 MAFGKPAMKNVPVEAGKEYEVT 22 (69)
T ss_dssp CCSSSSTTSCCSSCTTCEEEEE
T ss_pred CCcccchhccCCCCCCCEEEEE
Confidence 55566655 89999998875
No 6
>d2hx5a1 d.38.1.1 (A:1-144) Hypothetical protein PMT2055 {Prochlorococcus marinus [TaxId: 1219]}
Probab=14.33 E-value=29 Score=24.43 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=11.2
Q ss_pred CCCccCceeeccccc
Q 046001 8 RPIKYGDVFSVEGEI 22 (256)
Q Consensus 8 rpi~Ygdvf~v~g~l 22 (256)
||++|||.+.|.-.+
T Consensus 77 ~~~~~~d~i~v~~~v 91 (144)
T d2hx5a1 77 RPIHTGDALAMELRP 91 (144)
T ss_dssp SCCCTTCEEEEEEEE
T ss_pred ccccCCcceeEEEEE
Confidence 488888888876554
No 7
>d2cyea1 d.38.1.1 (A:1-132) Probable thioesterase TTHA1846 {Thermus thermophilus [TaxId: 274]}
Probab=11.96 E-value=36 Score=23.74 Aligned_cols=17 Identities=35% Similarity=0.352 Sum_probs=12.9
Q ss_pred CCCCccCceeecccccc
Q 046001 7 RRPIKYGDVFSVEGEIA 23 (256)
Q Consensus 7 ~rpi~Ygdvf~v~g~la 23 (256)
+|||+|||.+.|.-.+.
T Consensus 63 ~~~~~~gd~i~i~~~i~ 79 (132)
T d2cyea1 63 LRPILLGDEVFVGVRTV 79 (132)
T ss_dssp CSCCBTTCEEEEEEEEE
T ss_pred ccccccccceEEEEEEE
Confidence 35888999888877663
No 8
>d1s7za_ a.159.3.1 (A:) B-form DNA mimic Ocr {Bacteriophage T7 [TaxId: 10760]}
Probab=11.88 E-value=13 Score=27.66 Aligned_cols=10 Identities=60% Similarity=1.065 Sum_probs=9.1
Q ss_pred CCccCceeec
Q 046001 9 PIKYGDVFSV 18 (256)
Q Consensus 9 pi~Ygdvf~v 18 (256)
|+-|+|||.|
T Consensus 42 P~yy~diFsV 51 (106)
T d1s7za_ 42 PHYYADIFSV 51 (106)
T ss_dssp CCSHHHHHHH
T ss_pred cchhhhHhhh
Confidence 8999999987
No 9
>d2hlja1 d.38.1.1 (A:1-156) Hypothetical protein PP0301 {Pseudomonas putida [TaxId: 303]}
Probab=10.84 E-value=39 Score=24.25 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=11.2
Q ss_pred CCCccCceeecccccc
Q 046001 8 RPIKYGDVFSVEGEIA 23 (256)
Q Consensus 8 rpi~Ygdvf~v~g~la 23 (256)
||++|||.|.|+-.+.
T Consensus 67 ~~l~~gd~i~V~~~i~ 82 (156)
T d2hlja1 67 HEVKLGTEVWVQTQIL 82 (156)
T ss_dssp SCCBTTCEEEEEEEEE
T ss_pred cccccccceEEEEeec
Confidence 3788888887765553
No 10
>d1s5ua_ d.38.1.1 (A:) Hypothetical protein YbgC {Escherichia coli [TaxId: 562]}
Probab=10.18 E-value=44 Score=22.89 Aligned_cols=15 Identities=27% Similarity=0.640 Sum_probs=11.5
Q ss_pred CCCccCceeeccccc
Q 046001 8 RPIKYGDVFSVEGEI 22 (256)
Q Consensus 8 rpi~Ygdvf~v~g~l 22 (256)
||++|||.+.|.-.+
T Consensus 65 ~~~~~~d~l~v~~~i 79 (129)
T d1s5ua_ 65 APARLDDMLEIQTEI 79 (129)
T ss_dssp SCCCTTCEEEEEEEE
T ss_pred ccccCCceeeEEEEE
Confidence 588888888877655
Done!