BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046002
         (160 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PZQ|A Chain A, Structure Of Fused Docking Domains From The Erythromycin
          Polyketide Synthase (Debs), A Model For The Interaction
          Between Debs 2 And Debs 3: The A Domain
 pdb|1PZQ|B Chain B, Structure Of Fused Docking Domains From The Erythromycin
          Polyketide Synthase (Debs), A Model For The Interaction
          Between Debs 2 And Debs 3: The A Domain
          Length = 60

 Score = 28.5 bits (62), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 11 DQAQRQESLKRRWQERRAVSP 31
          D  QR ESL RRW  RRA +P
Sbjct: 32 DVGQRLESLLRRWNSRRADAP 52


>pdb|2KC2|A Chain A, Nmr Structure Of The F1 Domain (Residues 86-202) Of The
           Talin
          Length = 128

 Score = 26.2 bits (56), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 8/79 (10%)

Query: 80  SICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDL 139
           +IC RI +  H  Y      +R++  E  +       +D  L           E ++  L
Sbjct: 40  TICARIGITNHDEYS----LVRELMEEKKDEGTGTLRKDKTLLRDEK----KMEKLKQKL 91

Query: 140 LLAGDLNWKDFVRVLREFG 158
               +LNW D  R LRE G
Sbjct: 92  HTDDELNWLDHGRTLREQG 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.133    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,425,368
Number of Sequences: 62578
Number of extensions: 96302
Number of successful extensions: 248
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 2
length of query: 160
length of database: 14,973,337
effective HSP length: 91
effective length of query: 69
effective length of database: 9,278,739
effective search space: 640232991
effective search space used: 640232991
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)