Query 046002
Match_columns 160
No_of_seqs 129 out of 498
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 13:18:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wmh_B Partitioning defective- 96.6 0.0066 2.3E-07 43.7 6.7 69 70-155 7-76 (86)
2 1vd2_A Protein kinase C, IOTA 96.5 0.007 2.4E-07 43.6 6.5 57 69-143 6-62 (89)
3 2kkc_A Sequestosome-1; P62, PB 95.6 0.027 9.4E-07 41.4 6.1 61 68-144 4-79 (102)
4 2ktr_A Sequestosome-1; autopha 95.1 0.052 1.8E-06 41.0 6.4 62 67-144 18-94 (117)
5 1q1o_A Cell division control p 93.7 0.25 8.4E-06 36.2 7.0 73 70-154 6-85 (98)
6 1oey_J P40-PHOX, neutrophil cy 89.5 0.59 2E-05 34.9 5.1 40 86-144 28-67 (107)
7 2bkf_A Zinc-finger protein NBR 85.9 2.8 9.6E-05 30.1 6.7 53 72-143 9-61 (87)
8 1oey_A P67-PHOX, neutrophil cy 85.5 3.5 0.00012 29.1 7.0 68 72-159 8-78 (83)
9 1wj6_A KIAA0049 protein, RSGI 84.0 3.2 0.00011 30.6 6.4 62 71-153 16-77 (101)
10 1pqs_A Cell division control p 83.5 3 0.0001 28.9 5.8 58 85-154 6-64 (77)
11 1e8p_A Endoglucanase, dockerin 62.1 2.4 8.2E-05 27.3 0.8 13 129-141 20-32 (46)
12 2npt_A Dual specificity mitoge 49.6 42 0.0014 24.7 5.8 54 72-143 17-71 (106)
13 2j4m_A Endoglucanase 45A; dock 34.5 8.8 0.0003 28.3 0.1 13 129-141 21-33 (100)
14 2i1s_A Hypothetical protein; m 27.4 56 0.0019 25.1 3.7 40 69-108 8-49 (188)
15 1pzq_A Erythronolide synthase; 20.2 31 0.0011 22.7 0.8 15 13-27 34-48 (60)
No 1
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=96.56 E-value=0.0066 Score=43.74 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=49.2
Q ss_pred CceEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCC-cChH
Q 046002 70 PPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGD-LNWK 148 (160)
Q Consensus 70 ~~VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGD-vPW~ 148 (160)
.-||..-++.--=-.+|-....+|++|+..|+++|.+.. ..++|.|.|.+||++-+-. +-..
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~-----------------~~f~i~Y~D~dGDLlpInnDdnl~ 69 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPG-----------------LDVLLGYTDAHGDLLPLTNDDSLH 69 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT-----------------CCCEEEEECTTSCEEECCSHHHHH
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCC-----------------CCEEEEEECCCCCEeeecCHHHHH
Confidence 457888888643335555677899999999999998532 3589999999999997754 3333
Q ss_pred HHHhccc
Q 046002 149 DFVRVLR 155 (160)
Q Consensus 149 ~Fv~sVK 155 (160)
+=+.++|
T Consensus 70 ~Al~~a~ 76 (86)
T 1wmh_B 70 RALASGP 76 (86)
T ss_dssp HHTTSSS
T ss_pred HHHHhCC
Confidence 3334444
No 2
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.51 E-value=0.007 Score=43.60 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=43.9
Q ss_pred CCceEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC
Q 046002 69 VPPVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG 143 (160)
Q Consensus 69 ~~~VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG 143 (160)
..=|||+-+|.-+ .+.+..--+|++|...|.++|.... ...+++.|.|.|||+.-+-
T Consensus 6 ~vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~~~----------------~~~f~lky~DEeGD~itis 62 (89)
T 1vd2_A 6 QVRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSFDN----------------EQLFTMKWIDEEGDPCTVS 62 (89)
T ss_dssp CEEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTCCS----------------SCCEEEEECCSSSCCEECC
T ss_pred eEEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCCCC----------------CCeEEEEEECCCCCccccc
Confidence 3468889999754 4444446799999999999999752 2358999999999987553
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=95.60 E-value=0.027 Score=41.40 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=44.7
Q ss_pred CCCceEEEEcCc----eeeeeeccCC-----------CCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEE
Q 046002 68 VVPPVTVVLEGR----SICQRISLHK-----------HASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAY 132 (160)
Q Consensus 68 ~~~~VKV~MeG~----~IGRKVDL~~-----------~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~Y 132 (160)
...-||++..|. .==|++-|.. ..+|++|...++++|.... ...|.|.|
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~----------------~~~f~l~Y 67 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALR----------------PGGFQAHY 67 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC----------------SSCEEEEE
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccC----------------CCcEEEEE
Confidence 345689999762 3346665542 2489999999999997532 23689999
Q ss_pred EcCCCCeEEcCC
Q 046002 133 EDMENDLLLAGD 144 (160)
Q Consensus 133 eD~EGD~MLVGD 144 (160)
.|.|||+.-+.+
T Consensus 68 ~DedGDlItiSs 79 (102)
T 2kkc_A 68 RAERGDLVAFSS 79 (102)
T ss_dssp ECTTCCEEEECS
T ss_pred ECCCCCEEEecC
Confidence 999999987665
No 4
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=95.14 E-value=0.052 Score=41.00 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=44.4
Q ss_pred CCCCceEEEEcC----ceeeeeeccC-----------CCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEE
Q 046002 67 TVVPPVTVVLEG----RSICQRISLH-----------KHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIA 131 (160)
Q Consensus 67 ~~~~~VKV~MeG----~~IGRKVDL~-----------~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~ 131 (160)
....-||++..| ..==|++-|. .-.+|++|...++++|..-. ...|.|.
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~----------------~~~f~l~ 81 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR----------------PGGFQAH 81 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC----------------SSCEEEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC----------------CCcEEEE
Confidence 345779999975 1223555554 13599999999999996432 2368999
Q ss_pred EEcCCCCeEEcCC
Q 046002 132 YEDMENDLLLAGD 144 (160)
Q Consensus 132 YeD~EGD~MLVGD 144 (160)
|.|.|||+.-+-.
T Consensus 82 YkDEdGDlItISs 94 (117)
T 2ktr_A 82 YRAERGDLVAFSS 94 (117)
T ss_dssp EECTTCCEEEECS
T ss_pred EECCCCCEEEecC
Confidence 9999999987654
No 5
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=93.67 E-value=0.25 Score=36.23 Aligned_cols=73 Identities=16% Similarity=0.282 Sum_probs=53.1
Q ss_pred CceEEEEcCc----ee--eeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC
Q 046002 70 PPVTVVLEGR----SI--CQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG 143 (160)
Q Consensus 70 ~~VKV~MeG~----~I--GRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG 143 (160)
.-|||+-+.. ++ .|.|=+..--+|++|...+.+-|..... . +. .....|-|+|.|||+...+
T Consensus 6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~-~--------~i---~~~~klkYkDEdGD~Vtl~ 73 (98)
T 1q1o_A 6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN-N--------NI---SPITKIKYQDEDGDFVVLG 73 (98)
T ss_dssp EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS-S--------CC---CCCCCEEEECSSSCEEEEC
T ss_pred EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc-c--------cc---cceeEEEEEcCCCCEEEEc
Confidence 4577777642 12 3677777888999999999999997521 0 00 1345799999999998777
Q ss_pred C-cChHHHHhcc
Q 046002 144 D-LNWKDFVRVL 154 (160)
Q Consensus 144 D-vPW~~Fv~sV 154 (160)
+ .=|++=+.++
T Consensus 74 sddDl~~A~e~~ 85 (98)
T 1q1o_A 74 SDEDWNVAKEML 85 (98)
T ss_dssp SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 6 6788887765
No 6
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=89.46 E-value=0.59 Score=34.90 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=33.4
Q ss_pred ccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCC
Q 046002 86 SLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGD 144 (160)
Q Consensus 86 DL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGD 144 (160)
||+.--.|.+|....++-|..... .|-|.|.|||+.-+=|
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~DI-------------------aLNYrD~eGDLIrild 67 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQREDI-------------------ALNYRDAEGDLVRLLS 67 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCSSE-------------------EEEEECTTSCEEECCS
T ss_pred ccccCCCHHHHHHHHHHHhcccce-------------------eeeeecCCCCEEEEcc
Confidence 678888999999999999996532 5899999999986644
No 7
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=85.89 E-value=2.8 Score=30.09 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=41.8
Q ss_pred eEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC
Q 046002 72 VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG 143 (160)
Q Consensus 72 VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG 143 (160)
.||.-.|...=--|.-..--++++|...+..+|+.. .++|.|.|.|||-.-|-
T Consensus 9 lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~-------------------~~~ikY~DEenD~v~i~ 61 (87)
T 2bkf_A 9 LNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------------------TIQIKYLDEENEEVSIN 61 (87)
T ss_dssp EEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-------------------SEEEEEECTTSCEEEEC
T ss_pred EEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC-------------------ceEEEEEcCCCCEEEEe
Confidence 688999975444465555789999999999999885 24799999999987653
No 8
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=85.46 E-value=3.5 Score=29.07 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=52.0
Q ss_pred eEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEc-CCCCeEEcCCcChHHH
Q 046002 72 VTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYED-MENDLLLAGDLNWKDF 150 (160)
Q Consensus 72 VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD-~EGD~MLVGDvPW~~F 150 (160)
|||+-. +.-.|....=-+|.+|...|.+-+....+ .=+|-|.| .+|.|++.+|.-++.=
T Consensus 8 VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~-----------------~~~LsYk~~~s~~~vi~~d~dl~~a 67 (83)
T 1oey_A 8 LKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLE-----------------HTKLSYRPRDSNELVPLSEDSMKDA 67 (83)
T ss_dssp EEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGG-----------------GCCEEECCTTCSSCEECCTTTHHHH
T ss_pred EEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcc-----------------eeEEEeeCCCCCCeeccChHHHHHH
Confidence 555555 67788888888999999999999887532 11489999 6888889999999987
Q ss_pred Hhc--cceeEe
Q 046002 151 VRV--LREFGY 159 (160)
Q Consensus 151 v~s--VKRLrI 159 (160)
... .-||++
T Consensus 68 w~~~~n~~LtL 78 (83)
T 1oey_A 68 WGQVKNYCLTL 78 (83)
T ss_dssp HTTCBTTEEEE
T ss_pred HHhccCCcEEE
Confidence 776 334544
No 9
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=83.99 E-value=3.2 Score=30.62 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=46.8
Q ss_pred ceEEEEcCceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCCcChHHH
Q 046002 71 PVTVVLEGRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGDLNWKDF 150 (160)
Q Consensus 71 ~VKV~MeG~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGDvPW~~F 150 (160)
-+||.-.|...=--|.-..--.+++|...+..+|+... ++|.|.|.|||-.-|=- +.+|
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~-------------------~~IkY~DEenD~V~i~S--q~E~ 74 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT-------------------IQIKYLDEENEEVSINS--QGEY 74 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS-------------------BCCEEECTTSCEECCCS--HHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc-------------------eEEEEecCCCCEEEEec--HHHH
Confidence 47899999765545755667899999999999998853 46899999999876643 4454
Q ss_pred Hhc
Q 046002 151 VRV 153 (160)
Q Consensus 151 v~s 153 (160)
-+.
T Consensus 75 eEA 77 (101)
T 1wj6_A 75 EEA 77 (101)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 10
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=83.52 E-value=3 Score=28.94 Aligned_cols=58 Identities=21% Similarity=0.371 Sum_probs=41.7
Q ss_pred eccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcCC-cChHHHHhcc
Q 046002 85 ISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAGD-LNWKDFVRVL 154 (160)
Q Consensus 85 VDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVGD-vPW~~Fv~sV 154 (160)
|=...--+|++|...+.+-|..... . +......|-|+|.|||+...++ .=|++=+.++
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~~~-~-----------~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNTHN-N-----------NISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTTTS-S-----------CSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHccccc-c-----------cccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 3345556899999999999986411 0 0023457999999999976665 7788887765
No 11
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=62.08 E-value=2.4 Score=27.30 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=11.2
Q ss_pred EEEEEcCCCCeEE
Q 046002 129 LIAYEDMENDLLL 141 (160)
Q Consensus 129 ~l~YeD~EGD~ML 141 (160)
.|+|+|.+|||=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4899999999954
No 12
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=49.65 E-value=42 Score=24.68 Aligned_cols=54 Identities=11% Similarity=0.237 Sum_probs=38.4
Q ss_pred eEEEEc-CceeeeeeccCCCCCHHHHHHHHHHhhccCccccccccccccccCCCCCCcEEEEEcCCCCeEEcC
Q 046002 72 VTVVLE-GRSICQRISLHKHASYQSLAKALRQMFVEGGEAAAINSEQDLDLSNAVPGHLIAYEDMENDLLLAG 143 (160)
Q Consensus 72 VKV~Me-G~~IGRKVDL~~~~sY~eL~~~L~~MF~~~~~~~~~~~~~~ldl~~~~~~~~l~YeD~EGD~MLVG 143 (160)
+.+.-. |.++--.||-..+=++..|..++.+..-.-.. -.+-|||.+||..-|-
T Consensus 17 IRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT~------------------TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 17 IRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATT------------------TAFEYEDEDGDRITVR 71 (106)
T ss_dssp EEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCC------------------SEEEEECTTSCEEEEC
T ss_pred EEEECCCCCccccccCCcccccHHHHHHHHHHhCcccee------------------eeeeeccccCCeeEEc
Confidence 344444 66788888887888999999998876544321 1478999999998774
No 13
>2j4m_A Endoglucanase 45A; dockerin, cellulosome, protein binding, small cysteine-rich; NMR {Piromyces equi} PDB: 2j4n_A
Probab=34.48 E-value=8.8 Score=28.26 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=11.1
Q ss_pred EEEEEcCCCCeEE
Q 046002 129 LIAYEDMENDLLL 141 (160)
Q Consensus 129 ~l~YeD~EGD~ML 141 (160)
.|+|+|.||||=.
T Consensus 21 ~V~YtD~dG~WGV 33 (100)
T 2j4m_A 21 KVEYTDASGQWGV 33 (100)
T ss_dssp CCCEESSSCEEEE
T ss_pred eEEEEcCCCccce
Confidence 5899999999953
No 14
>2i1s_A Hypothetical protein; methanosarcina mazei,MAD, PSI-2,MCSG, structural genomics, protein structure initiative; 2.30A {Methanosarcina mazei} SCOP: d.343.1.1
Probab=27.41 E-value=56 Score=25.08 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=35.5
Q ss_pred CCceEEEEcCc--eeeeeeccCCCCCHHHHHHHHHHhhccCc
Q 046002 69 VPPVTVVLEGR--SICQRISLHKHASYQSLAKALRQMFVEGG 108 (160)
Q Consensus 69 ~~~VKV~MeG~--~IGRKVDL~~~~sY~eL~~~L~~MF~~~~ 108 (160)
.--+||..+|. +|=|+|.+..-.+..+|-..|...|+-..
T Consensus 8 iy~lrV~L~~~~p~iWRri~Vp~~~TL~~LH~vIq~afgw~~ 49 (188)
T 2i1s_A 8 VYHLKLSIKGITPQIWRRIQVPENYTFLDLHKAIQAVMDWED 49 (188)
T ss_dssp EEEEEEEETTCSSCEEEEEEEETTCBHHHHHHHHHHHTTCCC
T ss_pred EEEEEEEECCCCCCeEEEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 34589999986 79999999999999999999999999654
No 15
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=20.24 E-value=31 Score=22.65 Aligned_cols=15 Identities=67% Similarity=1.064 Sum_probs=12.0
Q ss_pred hhhhHHHHhhhhhcC
Q 046002 13 AQRQESLKRRWQERR 27 (160)
Q Consensus 13 ~~~~~~~~~~~~~~~ 27 (160)
.||-+||-|||...+
T Consensus 34 gqrlesllrrwnsrr 48 (60)
T 1pzq_A 34 GQRLESLLRRWNSRR 48 (60)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc
Confidence 588899999996643
Done!