BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046004
         (157 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ETM|A Chain A, Crystal Structure Of Yfkj From Bacillus Subtilis
 pdb|4ETM|B Chain B, Crystal Structure Of Yfkj From Bacillus Subtilis
          Length = 173

 Score = 28.1 bits (61), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 11/27 (40%), Positives = 20/27 (74%)

Query: 111 EELLQKQGVSVKDMVSRIQSKQSADDF 137
           +E+L+++G+S   M++R  S+Q  DDF
Sbjct: 73  QEILRREGISFDGMLARQVSEQDLDDF 99


>pdb|1EFP|A Chain A, Electron Transfer Flavoprotein (Etf) From Paracoccus
           Denitrificans
 pdb|1EFP|C Chain C, Electron Transfer Flavoprotein (Etf) From Paracoccus
           Denitrificans
          Length = 307

 Score = 27.7 bits (60), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 110 LEELLQKQGVSVKDMVSRIQSKQSADDFQSGDNTKAWKPEL 150
           +EEL  K G +V    + + S  + +D+Q G   K   PEL
Sbjct: 211 IEELADKLGAAVGASRAAVDSGYAPNDWQVGQTGKVVAPEL 251


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.375 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,203,979
Number of Sequences: 62578
Number of extensions: 146955
Number of successful extensions: 340
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 3
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)