Query 046004
Match_columns 157
No_of_seqs 178 out of 435
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:20:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046004.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046004hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kmm_A Guanosine-3',5'-BIS(dip 64.2 8.1 0.00028 24.0 3.7 26 12-37 3-28 (73)
2 3hvz_A Uncharacterized protein 58.4 11 0.00039 24.7 3.7 28 9-36 5-32 (78)
3 1wwt_A Threonyl-tRNA synthetas 54.6 18 0.0006 23.5 4.2 29 9-37 9-38 (88)
4 1r8o_A STI, kunitz trypsin inh 43.9 12 0.00042 25.6 2.1 18 54-71 6-24 (96)
5 1ryj_A Unknown; beta/alpha pro 39.4 48 0.0016 20.6 4.3 53 15-69 7-66 (70)
6 1tie_A Erythrina trypsin inhib 37.3 19 0.00065 27.1 2.4 18 54-71 6-23 (172)
7 1r8n_A STI, kunitz trypsin inh 35.1 20 0.00068 27.3 2.3 18 54-71 10-27 (185)
8 1eyl_A RWCI-3, chymotrypsin in 34.6 21 0.00071 27.3 2.3 18 54-71 11-28 (186)
9 1avw_B STI, trypsin inhibitor; 34.1 19 0.00065 27.2 2.0 18 54-71 7-24 (177)
10 3s8k_A Latex serine proteinase 33.4 20 0.00069 27.3 2.0 18 54-71 10-27 (184)
11 3bx1_D BASI, alpha-amylase/sub 33.2 20 0.0007 27.1 2.0 17 54-70 10-26 (181)
12 2dre_A Water-soluble chlorophy 33.2 20 0.00069 27.2 2.0 18 54-71 11-28 (180)
13 2cu3_A Unknown function protei 32.4 55 0.0019 19.9 3.7 22 15-37 2-23 (64)
14 3tc2_A Kunitz-type proteinase 32.1 21 0.00072 27.2 1.9 18 54-71 12-29 (187)
15 1f0z_A THis protein; ubiquitin 30.4 28 0.00097 21.4 2.0 23 15-37 3-25 (66)
16 2gzb_A Kunitz-type proteinase 28.4 27 0.00093 26.1 2.0 18 54-71 9-27 (166)
17 2k5p_A THis protein, thiamine- 28.1 30 0.001 22.4 2.0 23 15-37 3-27 (78)
18 3iir_A Trypsin inhibitor; beta 28.1 20 0.00067 27.5 1.1 18 54-71 7-24 (190)
19 2kl0_A Putative thiamin biosyn 27.9 35 0.0012 21.8 2.2 22 15-37 3-24 (73)
20 2qn4_A RASI, alpha-amylase/sub 27.7 30 0.001 26.7 2.1 19 53-71 30-48 (200)
21 1shx_A Ephrin-A5; ephrin signa 25.1 45 0.0015 24.3 2.6 23 48-70 93-115 (138)
22 1wba_A Winged bean albumin 1; 24.9 33 0.0011 25.9 1.9 15 54-68 9-23 (175)
23 1vcb_B Protein (elongin C); tu 24.5 48 0.0016 22.9 2.6 26 2-27 9-34 (112)
24 3hei_B Ephrin-A1; EPH receptor 23.4 60 0.0021 23.5 3.0 24 48-71 93-116 (132)
25 1tyg_B YJBS; alpha beta barrel 23.4 44 0.0015 22.2 2.1 24 14-37 22-46 (87)
26 2ba3_A NIKA; dimer, bacterial 23.3 1.1E+02 0.0039 17.5 5.4 31 96-126 13-46 (51)
27 2lma_A THP5 peptide; CD4+, imm 23.2 14 0.00047 19.2 -0.4 7 146-152 1-7 (26)
28 2wo3_B Ephrin-A2; transferase- 22.7 62 0.0021 24.1 3.0 23 48-70 103-125 (157)
29 1m2d_A [2Fe-2S] ferredoxin; th 22.6 62 0.0021 21.8 2.8 34 1-37 56-89 (110)
30 3e8l_C Serine proteinase inhib 22.3 44 0.0015 25.5 2.1 18 54-71 20-37 (185)
31 4an6_A Trypsin inhibitor; kuni 21.7 50 0.0017 24.9 2.3 17 55-71 9-26 (185)
32 3d12_B Ephrin-B3; beta propell 20.8 86 0.0029 22.9 3.4 25 47-71 90-114 (141)
No 1
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=64.19 E-value=8.1 Score=23.99 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=23.1
Q ss_pred eEEEecCCcEEEEeCCCcHHHHHhhc
Q 046004 12 IKVMKTDGKILEYNQPIRVQDVLAEF 37 (157)
Q Consensus 12 ikV~~~dG~v~e~~~pv~a~~vm~~~ 37 (157)
++|..+||++.+|...+|+.++....
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 67777899999999999999998775
No 2
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=58.35 E-value=11 Score=24.68 Aligned_cols=28 Identities=14% Similarity=0.169 Sum_probs=23.9
Q ss_pred CceeEEEecCCcEEEEeCCCcHHHHHhh
Q 046004 9 EKVIKVMKTDGKILEYNQPIRVQDVLAE 36 (157)
Q Consensus 9 ~~~ikV~~~dG~v~e~~~pv~a~~vm~~ 36 (157)
...+.|..|||.+.+|....|+.|+-..
T Consensus 5 ~~~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 5 PEEVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp -CEEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred CceEEEECCCCCEEEecCCCCHHHHHHH
Confidence 3578999999999999999999997644
No 3
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=54.63 E-value=18 Score=23.48 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=25.0
Q ss_pred CceeEEEecCCcEEEEeC-CCcHHHHHhhc
Q 046004 9 EKVIKVMKTDGKILEYNQ-PIRVQDVLAEF 37 (157)
Q Consensus 9 ~~~ikV~~~dG~v~e~~~-pv~a~~vm~~~ 37 (157)
...++|..+||++.+|.. ++++.++....
T Consensus 9 ~~~i~I~lpdG~~~~~~~~~~T~~dia~~i 38 (88)
T 1wwt_A 9 SKPIKVTLPDGKQVDAESWKTTPYQIACGI 38 (88)
T ss_dssp CCEEEEECTTSCEEEEETTTCCHHHHHHHS
T ss_pred CCCEEEEECCCCEEEcccCCCCHHHHHHHh
Confidence 456788888999999997 99999998775
No 4
>1r8o_A STI, kunitz trypsin inhibitor; kunitz (STI) trypsin inhibitor, beta-trefoil fold, hydrolase inhibitor; 1.83A {Copaifera langsdorffii} SCOP: b.42.4.1
Probab=43.94 E-value=12 Score=25.58 Aligned_cols=18 Identities=17% Similarity=0.368 Sum_probs=15.5
Q ss_pred CCCcc-CCCCeEEEeeCCC
Q 046004 54 PDFKL-VGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L-~~G~~YfLlP~~~ 71 (157)
.+++| ++|.-||++|...
T Consensus 6 ~G~~l~~~G~~YyI~p~~~ 24 (96)
T 1r8o_A 6 DGKPIENDGAEYYILPSVR 24 (96)
T ss_dssp TSCCCBSSSSCEEEEESSS
T ss_pred CCCEeeeCCCcEEEeeCcc
Confidence 46899 9999999999854
No 5
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=39.43 E-value=48 Score=20.64 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=33.3
Q ss_pred EecCCcE----EEEeCCCcHHHHHhhc---CCcEEeCCCCCccCCCCCCccCCCCeEEEeeC
Q 046004 15 MKTDGKI----LEYNQPIRVQDVLAEF---SGHAISDSLPEIRHLRPDFKLVGGNLYFLVPV 69 (157)
Q Consensus 15 ~~~dG~v----~e~~~pv~a~~vm~~~---Pgh~v~~s~~~~~~L~~d~~L~~G~~YfLlP~ 69 (157)
|..||+. .++....|+++++... +..++.--.. ..++.++.|+.|----++|.
T Consensus 7 i~vNg~~~~~~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~--~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 7 FTVITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNG--QIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp EEEEETTEEEEEEESSCCBHHHHHHHTTCCTTTEEEEETT--EECCTTSBCCTTCEEEEEEC
T ss_pred EEEeCccCceeEECCCCCcHHHHHHHhCCCCCCEEEEECC--EECCCcccCCCCCEEEEEec
Confidence 5667887 8898899999999885 2222211111 23456667888765555554
No 6
>1tie_A Erythrina trypsin inhibitor; proteinase inhibitor (trypsin); 2.50A {Erythrina caffra} SCOP: b.42.4.1
Probab=37.27 E-value=19 Score=27.08 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.5
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+++|++|.-||++|+..
T Consensus 6 ~G~~l~~G~~YyI~p~~~ 23 (172)
T 1tie_A 6 NGEVVQNGGTYYLLPQVW 23 (172)
T ss_dssp TSCBCCTTCEEEEEESSG
T ss_pred CCCCCcCCCCEEEeECcc
Confidence 478999999999999853
No 7
>1r8n_A STI, kunitz trypsin inhibitor; kunitz-type trypsin/kallikrein inhibitor, beta-trefoil fold, flamboyant, hydrolase inhibitor; 1.75A {Delonix regia} SCOP: b.42.4.1
Probab=35.09 E-value=20 Score=27.33 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=15.7
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+++|++|.-||++|+..
T Consensus 10 ~G~~l~~G~~YyI~p~~~ 27 (185)
T 1r8n_A 10 EGYPVFLGSEYYIVSAII 27 (185)
T ss_dssp TSCBCBTTSEEEEEECTT
T ss_pred CCCCCcCCCCEEEEECcc
Confidence 478999999999999854
No 8
>1eyl_A RWCI-3, chymotrypsin inhibitor; beta trefoil, hydrolase inhibitor; HET: SO4; 1.90A {Psophocarpus tetragonolobus} SCOP: b.42.4.1 PDB: 1fn0_A* 2beb_A 2esu_A 1fmz_A* 2bea_A 2et2_A 4wbc_A* 1wbc_A 2wbc_A* 1xg6_A 2qyi_B 3i29_B 3i2x_A 3i2a_A 3qyd_A
Probab=34.64 E-value=21 Score=27.27 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=15.6
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+++|++|.-||++|...
T Consensus 11 ~G~~l~~G~~YYI~p~~~ 28 (186)
T 1eyl_A 11 EGNLVENGGTYYLLPHIW 28 (186)
T ss_dssp TSSBCBTTCEEEEEESSG
T ss_pred CCCCCcCCCCEEEeeccc
Confidence 478999999999999853
No 9
>1avw_B STI, trypsin inhibitor; complex (proteinase/inhibitor), porcine trypsin, soybean trypsin inhibitor, kunitz-type, beta-trefoil fold; 1.75A {Glycine max} SCOP: b.42.4.1 PDB: 1avx_B 1avu_A 1ba7_A
Probab=34.15 E-value=19 Score=27.18 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=15.6
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+++|++|.-||++|+..
T Consensus 7 ~G~~l~~G~~YyI~p~~~ 24 (177)
T 1avw_B 7 EGNPLENGGTYYILSDIT 24 (177)
T ss_dssp TSCBCBTTEEEEEEESST
T ss_pred CCCCCcCCCcEEEEeCcc
Confidence 478999999999999853
No 10
>3s8k_A Latex serine proteinase inhibitor; kunitz-STI fold, protease inhibitor, hydrolase inhibitor; HET: NAG FUC; 1.70A {Carica papaya} PDB: 3s8j_A*
Probab=33.37 E-value=20 Score=27.28 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.6
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+++|++|.-||++|+..
T Consensus 10 ~G~~l~~g~~YyI~p~~~ 27 (184)
T 3s8k_A 10 DGKPVLYGVDYFVVSAIW 27 (184)
T ss_dssp TSCBCBTTSCEEEEESSC
T ss_pred CCCCCcCCCcEEEEEccc
Confidence 368999999999999864
No 11
>3bx1_D BASI, alpha-amylase/subtilisin inhibitor; complex (proteinase/inhibitor) enzyme inhibition, savinase, barley alpha-amylase/subtilisin inhibitor; 1.85A {Hordeum vulgare} SCOP: b.42.4.1 PDB: 1ava_C 2iwt_B*
Probab=33.24 E-value=20 Score=27.13 Aligned_cols=17 Identities=12% Similarity=0.313 Sum_probs=15.2
Q ss_pred CCCccCCCCeEEEeeCC
Q 046004 54 PDFKLVGGNLYFLVPVP 70 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~ 70 (157)
.+++|++|.-||++|..
T Consensus 10 ~G~~l~~G~~YyI~p~~ 26 (181)
T 3bx1_D 10 DGHELRADANYYVLSAN 26 (181)
T ss_dssp TSCBCBTTSCEEEEESS
T ss_pred CCCCCcCCCCEEEEecc
Confidence 47899999999999985
No 12
>2dre_A Water-soluble chlorophyll protein; beta-trefoil, tetramer, plant, singlet oxygen, photooxidation, chlorophyll carrier; HET: CLA; 2.00A {Lepidium virginicum}
Probab=33.17 E-value=20 Score=27.17 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=15.7
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+++|++|.-||++|+..
T Consensus 11 ~G~~l~~G~~YyI~p~~~ 28 (180)
T 2dre_A 11 NGNPLKIETRYFIQPASD 28 (180)
T ss_dssp TSCBCBTTCCEEEEESSC
T ss_pred CCCCCcCCCCEEEEeCcc
Confidence 478999999999999864
No 13
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=32.37 E-value=55 Score=19.87 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.2
Q ss_pred EecCCcEEEEeCCCcHHHHHhhc
Q 046004 15 MKTDGKILEYNQPIRVQDVLAEF 37 (157)
Q Consensus 15 ~~~dG~v~e~~~pv~a~~vm~~~ 37 (157)
|..||+..++ ...|+++++...
T Consensus 2 i~vNg~~~~~-~~~tv~~ll~~l 23 (64)
T 2cu3_A 2 VWLNGEPRPL-EGKTLKEVLEEM 23 (64)
T ss_dssp EEETTEEECC-TTCCHHHHHHHH
T ss_pred EEECCEEEEc-CCCcHHHHHHHc
Confidence 5679999999 889999999874
No 14
>3tc2_A Kunitz-type proteinase inhibitor P1H5; beta-trefoil fold, protease inhibitor, hydrolase inhibitor; 1.60A {Solanum tuberosum}
Probab=32.07 E-value=21 Score=27.16 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=15.7
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+.+|++|.-||++|+..
T Consensus 12 ~G~~l~~g~~YyI~p~~~ 29 (187)
T 3tc2_A 12 TGKELDPRLSYRIISTFW 29 (187)
T ss_dssp TSCBCCTTSCEEEECSCC
T ss_pred CCCCCcCCCCEEEEEccc
Confidence 368999999999999974
No 15
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=30.36 E-value=28 Score=21.36 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=20.4
Q ss_pred EecCCcEEEEeCCCcHHHHHhhc
Q 046004 15 MKTDGKILEYNQPIRVQDVLAEF 37 (157)
Q Consensus 15 ~~~dG~v~e~~~pv~a~~vm~~~ 37 (157)
+..||+..++....|+++++...
T Consensus 3 i~vNg~~~~~~~~~tv~~ll~~l 25 (66)
T 1f0z_A 3 ILFNDQAMQCAAGQTVHELLEQL 25 (66)
T ss_dssp EEESSCEECCCTTCCHHHHHHHH
T ss_pred EEECCEEEEcCCCCcHHHHHHHc
Confidence 56799999999999999999874
No 16
>2gzb_A Kunitz-type proteinase inhibitor BBCI; cruzipain, cysteine proteinase inhibitor, hydrolase; 1.70A {Bauhinia bauhinioides} PDB: 2go2_A
Probab=28.42 E-value=27 Score=26.13 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.6
Q ss_pred CCCccCC-CCeEEEeeCCC
Q 046004 54 PDFKLVG-GNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~-G~~YfLlP~~~ 71 (157)
.+++|++ |.-||++|...
T Consensus 9 ~G~~l~~~g~~YyI~p~~~ 27 (166)
T 2gzb_A 9 KGEPVSNAADAYYLVPVSH 27 (166)
T ss_dssp TSCBCBBSCSCEEEEESSS
T ss_pred CCCEeecCCCCEEEEeCcc
Confidence 4789999 99999999853
No 17
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=28.11 E-value=30 Score=22.39 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=20.0
Q ss_pred EecCCcEEEEe--CCCcHHHHHhhc
Q 046004 15 MKTDGKILEYN--QPIRVQDVLAEF 37 (157)
Q Consensus 15 ~~~dG~v~e~~--~pv~a~~vm~~~ 37 (157)
|..||+..++. .+.|+++++.+.
T Consensus 3 I~vNGe~~e~~~~~~~Tl~~LL~~l 27 (78)
T 2k5p_A 3 LTVNGKPSTVDGAESLNVTELLSAL 27 (78)
T ss_dssp EEETTEEEECSSCSCEEHHHHHHHH
T ss_pred EEECCEEEEcCCCCCCcHHHHHHHc
Confidence 56799999998 779999999874
No 18
>3iir_A Trypsin inhibitor; beta-trefoil fold, hydrolase inhib; 2.90A {Murraya koenigii} SCOP: b.42.4.0
Probab=28.09 E-value=20 Score=27.46 Aligned_cols=18 Identities=22% Similarity=0.161 Sum_probs=15.4
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+.+|++|.-||++|+..
T Consensus 7 ~G~~l~~g~~YyI~p~~~ 24 (190)
T 3iir_A 7 NGNVVEASRDYYLVSVIG 24 (190)
T ss_dssp TSCBCBTTSCBEEEEEEE
T ss_pred CCCCCcCCCCEEEEECcc
Confidence 368999999999999853
No 19
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=27.88 E-value=35 Score=21.78 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.3
Q ss_pred EecCCcEEEEeCCCcHHHHHhhc
Q 046004 15 MKTDGKILEYNQPIRVQDVLAEF 37 (157)
Q Consensus 15 ~~~dG~v~e~~~pv~a~~vm~~~ 37 (157)
|..||+..++ ...|+++++.+.
T Consensus 3 I~vNG~~~e~-~~~Tl~~LL~~l 24 (73)
T 2kl0_A 3 VTINGEQREV-QSASVAALMTEL 24 (73)
T ss_dssp EEETTEEECC-CCSBHHHHHHHT
T ss_pred EEECCEEEEc-CCCcHHHHHHHc
Confidence 5679999999 899999999874
No 20
>2qn4_A RASI, alpha-amylase/subtilisin inhibitor; amylase inhibitor, alpha- amylase inhibitor, protease inhibitor, serine protease inhibitor; 1.80A {Oryza sativa subsp}
Probab=27.74 E-value=30 Score=26.66 Aligned_cols=19 Identities=16% Similarity=0.434 Sum_probs=16.1
Q ss_pred CCCCccCCCCeEEEeeCCC
Q 046004 53 RPDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 53 ~~d~~L~~G~~YfLlP~~~ 71 (157)
-.+++|++|.-||++|...
T Consensus 30 ~~G~~l~~G~~YyI~p~~~ 48 (200)
T 2qn4_A 30 TEGHELSADGSYYVLPASP 48 (200)
T ss_dssp TTSCBCBTTSCEEEEESST
T ss_pred CCCCCCcCCCcEEEEeCcc
Confidence 3579999999999999854
No 21
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=25.15 E-value=45 Score=24.34 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.4
Q ss_pred CccCCCCCCccCCCCeEEEeeCC
Q 046004 48 EIRHLRPDFKLVGGNLYFLVPVP 70 (157)
Q Consensus 48 ~~~~L~~d~~L~~G~~YfLlP~~ 70 (157)
.+.|.+-+-|.++|+-||.+-.+
T Consensus 93 ~fsP~p~G~EF~pG~~YY~ISts 115 (138)
T 1shx_A 93 LFTPFSLGFEFRPGREYFYISSA 115 (138)
T ss_dssp SCCSSTTCCCCCTTEEEEEEEEE
T ss_pred EcCCCCCceeecCCCeEEEEEcC
Confidence 46899999999999999999764
No 22
>1wba_A Winged bean albumin 1; SEED storage protein; 1.80A {Psophocarpus tetragonolobus} SCOP: b.42.4.1
Probab=24.93 E-value=33 Score=25.90 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=13.8
Q ss_pred CCCccCCCCeEEEee
Q 046004 54 PDFKLVGGNLYFLVP 68 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP 68 (157)
.+++|++|.-||++|
T Consensus 9 ~G~~l~~g~~YyI~p 23 (175)
T 1wba_A 9 EGNKLVNRGKYTIVS 23 (175)
T ss_dssp TSCBCBTTEEEEEEE
T ss_pred CCCCCcCCCcEEEee
Confidence 478999999999999
No 23
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=24.53 E-value=48 Score=22.86 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=15.8
Q ss_pred CCccccCCceeEEEecCCcEEEEeCC
Q 046004 2 GNCLVLEEKVIKVMKTDGKILEYNQP 27 (157)
Q Consensus 2 GNC~~~~~~~ikV~~~dG~v~e~~~p 27 (157)
|.|-+.....++++..||.+++...-
T Consensus 9 ~~~~~~~~~~v~L~SsDG~~F~V~~~ 34 (112)
T 1vcb_B 9 GGCEGPDAMYVKLISSDGHEFIVKRE 34 (112)
T ss_dssp --------CEEEEECTTSCEEEEEHH
T ss_pred CCccCCCCCEEEEEcCCCCEEEECHH
Confidence 55666677889999999999988643
No 24
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=23.41 E-value=60 Score=23.51 Aligned_cols=24 Identities=13% Similarity=0.389 Sum_probs=21.0
Q ss_pred CccCCCCCCccCCCCeEEEeeCCC
Q 046004 48 EIRHLRPDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 48 ~~~~L~~d~~L~~G~~YfLlP~~~ 71 (157)
.+.|.+-+-|.++|+-||.+..+.
T Consensus 93 ~FSP~p~G~EF~pG~~YY~ISt~~ 116 (132)
T 3hei_B 93 RFTPFTLGKEFKEGHSYYYISKPI 116 (132)
T ss_dssp SCCSCTTSCCCCTTCEEEEEEEES
T ss_pred EcCCCCCCeeecCCCcEEEEEccC
Confidence 468999999999999999997753
No 25
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=23.39 E-value=44 Score=22.20 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.0
Q ss_pred EEecCCcEEEEeCC-CcHHHHHhhc
Q 046004 14 VMKTDGKILEYNQP-IRVQDVLAEF 37 (157)
Q Consensus 14 V~~~dG~v~e~~~p-v~a~~vm~~~ 37 (157)
-|..||+..++... .|+.+|+.+.
T Consensus 22 ~I~vNGe~~el~~~~~Tv~dLL~~L 46 (87)
T 1tyg_B 22 MLQLNGKDVKWKKDTGTIQDLLASY 46 (87)
T ss_dssp CEEETTEEECCSSSCCBHHHHHHHT
T ss_pred EEEECCEEEECCCCCCcHHHHHHHh
Confidence 36789999999987 9999999885
No 26
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=23.33 E-value=1.1e+02 Score=17.47 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=23.4
Q ss_pred CceEEEEEEeCHHHHHHHHHh---ccCCHHHHHH
Q 046004 96 GGVVRIKLVISKQELEELLQK---QGVSVKDMVS 126 (157)
Q Consensus 96 ~g~~rvkl~i~k~~L~~ll~~---~~~s~e~~l~ 126 (157)
.....+.|++|.+|.+.|-.. .|.++-+.+-
T Consensus 13 ~r~~~i~vRlt~eE~~~l~~~A~~~g~s~SeyiR 46 (51)
T 2ba3_A 13 QKTVVRTLRFSPVEDETIRKKAEDSGLTVSAYIR 46 (51)
T ss_dssp CCSEEEEEEECHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred cCceeEEEEECHHHHHHHHHHHHHhCCCHHHHHH
Confidence 345889999999999988764 4677766543
No 27
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=23.19 E-value=14 Score=19.18 Aligned_cols=7 Identities=43% Similarity=1.379 Sum_probs=5.7
Q ss_pred ccccCcC
Q 046004 146 WKPELES 152 (157)
Q Consensus 146 WrP~LeS 152 (157)
|||-||.
T Consensus 1 wrpylqt 7 (26)
T 2lma_A 1 WRPYLQT 7 (26)
T ss_dssp CCTTHHH
T ss_pred CCccccc
Confidence 9998874
No 28
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=22.67 E-value=62 Score=24.12 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=20.7
Q ss_pred CccCCCCCCccCCCCeEEEeeCC
Q 046004 48 EIRHLRPDFKLVGGNLYFLVPVP 70 (157)
Q Consensus 48 ~~~~L~~d~~L~~G~~YfLlP~~ 70 (157)
.+.|++-+-|.++|+-||.+..+
T Consensus 103 ~fSP~p~G~EF~pG~~YY~ISTS 125 (157)
T 2wo3_B 103 LFTPFSLGFEFRPGHEYYYISAT 125 (157)
T ss_dssp SSCSSTTSCCCCTTCEEEEEEEC
T ss_pred ECCCCCCCeeeeCCCeEEEEEec
Confidence 46899999999999999999875
No 29
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=22.63 E-value=62 Score=21.81 Aligned_cols=34 Identities=18% Similarity=0.321 Sum_probs=20.4
Q ss_pred CCCccccCCceeEEEecCCcEEEEeCCCcHHHHHhhc
Q 046004 1 MGNCLVLEEKVIKVMKTDGKILEYNQPIRVQDVLAEF 37 (157)
Q Consensus 1 MGNC~~~~~~~ikV~~~dG~v~e~~~pv~a~~vm~~~ 37 (157)
||+|-. ..+-+|.+||.+..--.|-.+.+|+.+|
T Consensus 56 lG~C~~---gP~v~V~P~~~~y~~vt~e~v~~il~~~ 89 (110)
T 1m2d_A 56 MNASMM---GPVVVVYPDGVWYGQVKPEDVDEIVEKH 89 (110)
T ss_dssp CSCGGG---CSCEEEETTTEEECSCCGGGHHHHHHHT
T ss_pred CCccCC---CCEEEEEeCCEEEecCCHHHHHHHHHHH
Confidence 455632 3344555898554444566777788775
No 30
>3e8l_C Serine proteinase inhibitor A; beta-trefoil fold, protease inhibitor, complex, DIG hydrolase, metal-binding, protease, secreted; 2.48A {Sagittaria sagittifolia}
Probab=22.26 E-value=44 Score=25.47 Aligned_cols=18 Identities=11% Similarity=-0.128 Sum_probs=15.5
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
..++|+.|.-||++|+..
T Consensus 20 ~~~~~~nG~~YYIlPai~ 37 (185)
T 3e8l_C 20 QLNLGGNYPLYTIQSAAI 37 (185)
T ss_dssp BCCCSSSCCCEEEEECCT
T ss_pred eccccCCCCcEEEEEeec
Confidence 367889999999999975
No 31
>4an6_A Trypsin inhibitor; kunitz type inhibitor, factor XA inhibitor, hydrolase inhibi; 1.94A {Tamarindus indica} PDB: 4an7_B
Probab=21.72 E-value=50 Score=24.91 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=13.7
Q ss_pred CCc-cCCCCeEEEeeCCC
Q 046004 55 DFK-LVGGNLYFLVPVPL 71 (157)
Q Consensus 55 d~~-L~~G~~YfLlP~~~ 71 (157)
+.+ |+.|.-||++|+..
T Consensus 9 G~pvl~~g~~YYIlP~~~ 26 (185)
T 4an6_A 9 GKPVLNNAGQYYILPAKQ 26 (185)
T ss_dssp SCBCBSSSSEEEEEESSC
T ss_pred CCEeecCCCCEEEEECcc
Confidence 345 78999999999865
No 32
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=20.78 E-value=86 Score=22.87 Aligned_cols=25 Identities=8% Similarity=0.057 Sum_probs=21.8
Q ss_pred CCccCCCCCCccCCCCeEEEeeCCC
Q 046004 47 PEIRHLRPDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 47 ~~~~~L~~d~~L~~G~~YfLlP~~~ 71 (157)
+.+.|.+-+-|.++|+-||.+..+.
T Consensus 90 q~fsP~p~G~EF~pG~~YY~ISts~ 114 (141)
T 3d12_B 90 QEYSPNLWGHEFRSHHDYYIIATSD 114 (141)
T ss_dssp SSCCSCCSCCCCCTTCEEEEEECSC
T ss_pred EEcCCCCCceeeeCCCeEEEEecCC
Confidence 3568999999999999999998864
Done!