Query 046004
Match_columns 157
No_of_seqs 178 out of 435
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 13:20:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046004.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046004hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tkea1 d.15.10.1 (A:1-62) Thr 76.3 1.1 7.7E-05 26.8 3.0 26 12-37 2-27 (62)
2 d1nyra2 d.15.10.1 (A:4-62) Thr 71.4 0.33 2.4E-05 29.0 -0.3 26 12-37 1-26 (59)
3 d1zud21 d.15.3.2 (2:2-66) Thia 44.7 5.2 0.00038 23.7 1.8 23 15-37 2-24 (65)
4 d2cu3a1 d.15.3.2 (A:1-63) Unch 44.5 7.3 0.00053 22.9 2.5 23 14-37 1-23 (63)
5 d1tiea_ b.42.4.1 (A:) Erythrin 42.0 6.4 0.00047 27.8 2.3 18 54-71 6-23 (170)
6 d1tygb_ d.15.3.2 (B:) Thiamin 41.9 5.9 0.00043 23.4 1.8 24 14-37 1-25 (65)
7 d1eyla_ b.42.4.1 (A:) chymotry 41.8 6.4 0.00047 28.1 2.3 18 54-71 10-27 (179)
8 d1r8na_ b.42.4.1 (A:) Serine p 39.5 7.2 0.00053 27.9 2.3 18 54-71 10-27 (185)
9 d1wbaa_ b.42.4.1 (A:) Winged b 38.8 6.5 0.00047 27.7 1.9 18 54-71 8-25 (171)
10 d3bx1c1 b.42.4.1 (C:1-181) Amy 37.3 8.2 0.0006 27.5 2.3 18 54-71 10-27 (181)
11 d1avwb_ b.42.4.1 (B:) Soybean 36.3 7.5 0.00055 27.6 1.9 18 54-71 7-24 (177)
12 d1i5za1 a.4.5.4 (A:138-206) Ca 35.5 11 0.00077 22.0 2.2 33 100-132 25-57 (69)
13 d3e5ua1 a.4.5.4 (A:148-227) Ch 35.3 6.8 0.00049 23.6 1.3 36 97-132 23-58 (80)
14 g1r8o.1 b.42.4.1 (A:,B:) Two-c 32.6 10 0.00073 26.6 2.0 19 54-72 6-25 (167)
15 d2zcwa1 a.4.5.4 (A:118-199) Tr 31.7 19 0.0014 21.5 3.1 33 100-132 25-57 (82)
16 d2uyzb1 d.15.1.1 (B:20-96) SUM 29.8 23 0.0017 20.9 3.2 28 11-38 4-33 (77)
17 d2hoea1 a.4.5.63 (A:10-71) N-a 29.3 16 0.0012 21.1 2.3 30 105-134 13-42 (62)
18 d1dmla2 d.131.1.2 (A:170-319) 29.1 17 0.0013 25.3 2.8 15 101-115 7-21 (150)
19 d1shxa1 b.6.1.5 (A:32-170) Eph 27.3 36 0.0026 23.1 4.2 23 48-70 93-115 (138)
20 d1wgra_ d.15.1.5 (A:) Growth f 26.7 40 0.0029 21.0 4.2 29 8-36 8-38 (100)
21 d2jmfa1 b.72.1.1 (A:521-553) U 26.2 13 0.00097 19.2 1.3 17 51-67 2-21 (33)
22 d1z05a1 a.4.5.63 (A:10-80) Tra 25.1 3.4 0.00025 24.6 -1.6 29 105-133 21-49 (71)
23 d1egwa_ d.88.1.1 (A:) Myocyte 24.9 39 0.0029 20.2 3.6 25 12-37 44-68 (71)
24 d1iqpa1 a.80.1.1 (A:233-327) R 23.1 38 0.0027 20.7 3.4 25 107-131 23-47 (95)
25 d1m2da_ c.47.1.11 (A:) Thiored 22.8 29 0.0021 21.6 2.8 28 10-37 60-87 (101)
26 d1ft9a1 a.4.5.4 (A:134-213) CO 21.9 18 0.0013 21.4 1.6 36 97-132 23-58 (80)
27 d1u3em2 d.285.1.1 (M:106-174) 20.4 31 0.0023 20.6 2.3 29 8-36 14-42 (69)
28 d1sxjc1 a.80.1.1 (C:239-333) R 20.1 50 0.0036 20.0 3.5 25 107-131 22-46 (95)
No 1
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}
Probab=76.26 E-value=1.1 Score=26.78 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.8
Q ss_pred eEEEecCCcEEEEeCCCcHHHHHhhc
Q 046004 12 IKVMKTDGKILEYNQPIRVQDVLAEF 37 (157)
Q Consensus 12 ikV~~~dG~v~e~~~pv~a~~vm~~~ 37 (157)
++|-.|||.+.+|...+|+.|+-...
T Consensus 2 ~~ItlPDG~~~~~~~g~T~~diA~~I 27 (62)
T d1tkea1 2 PVITLPDGSQRHYDHAVSPMDVALDI 27 (62)
T ss_dssp CEEECTTSCEEECSSCBCHHHHHHHH
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHH
Confidence 56777999999999999999998773
No 2
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=71.36 E-value=0.33 Score=28.97 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=22.7
Q ss_pred eEEEecCCcEEEEeCCCcHHHHHhhc
Q 046004 12 IKVMKTDGKILEYNQPIRVQDVLAEF 37 (157)
Q Consensus 12 ikV~~~dG~v~e~~~pv~a~~vm~~~ 37 (157)
|+|..|||.+.+|..++|+.|+-...
T Consensus 1 I~ItlPDG~~~~~~~g~T~~diA~~I 26 (59)
T d1nyra2 1 INIQFPDGNKKAFDKGTTTEDIAQSI 26 (59)
T ss_dssp CBBCCTTSCCCBCCTTCCHHHHHHTT
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHH
Confidence 46778999999999999999987764
No 3
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}
Probab=44.66 E-value=5.2 Score=23.71 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=20.4
Q ss_pred EecCCcEEEEeCCCcHHHHHhhc
Q 046004 15 MKTDGKILEYNQPIRVQDVLAEF 37 (157)
Q Consensus 15 ~~~dG~v~e~~~pv~a~~vm~~~ 37 (157)
|..||+..++..+.|+++++..+
T Consensus 2 I~vNg~~~~~~~~~tl~~ll~~l 24 (65)
T d1zud21 2 ILFNDQAMQCAAGQTVHELLEQL 24 (65)
T ss_dssp EEETTEEECCCTTCBHHHHHHHH
T ss_pred EEECCEEEEcCCCCcHHHHHHHc
Confidence 46799999999999999999873
No 4
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}
Probab=44.53 E-value=7.3 Score=22.93 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=19.3
Q ss_pred EEecCCcEEEEeCCCcHHHHHhhc
Q 046004 14 VMKTDGKILEYNQPIRVQDVLAEF 37 (157)
Q Consensus 14 V~~~dG~v~e~~~pv~a~~vm~~~ 37 (157)
+|..||+..++. ..++.+++.++
T Consensus 1 ~I~vNGe~~~~~-~~tl~~LL~~l 23 (63)
T d2cu3a1 1 MVWLNGEPRPLE-GKTLKEVLEEM 23 (63)
T ss_dssp CEEETTEEECCT-TCCHHHHHHHH
T ss_pred CEEECCEEEEcC-CCCHHHHHHHc
Confidence 478899999994 78999999874
No 5
>d1tiea_ b.42.4.1 (A:) Erythrina cafra trypsin inhibitor {Erythrina caffra [TaxId: 3842]}
Probab=42.03 E-value=6.4 Score=27.82 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=15.6
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+++|++|.-||++|+..
T Consensus 6 ~G~~l~~G~~YYIlp~~~ 23 (170)
T d1tiea_ 6 NGEVVQNGGTYYLLPQVW 23 (170)
T ss_dssp TSCBCCTTCEEEEEESSG
T ss_pred CCCCccCCCcEEEEEeee
Confidence 368999999999999864
No 6
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}
Probab=41.86 E-value=5.9 Score=23.40 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEecCCcEEEEeCC-CcHHHHHhhc
Q 046004 14 VMKTDGKILEYNQP-IRVQDVLAEF 37 (157)
Q Consensus 14 V~~~dG~v~e~~~p-v~a~~vm~~~ 37 (157)
+|..||+..+|..+ .++++++.+.
T Consensus 1 ~I~vNG~~~~~~~~~~tl~~LL~~l 25 (65)
T d1tygb_ 1 MLQLNGKDVKWKKDTGTIQDLLASY 25 (65)
T ss_dssp CEEETTEEECCSSSCCBHHHHHHHT
T ss_pred CEEECCEEEEcCCCcccHHHHHHHc
Confidence 46789999999887 4999999874
No 7
>d1eyla_ b.42.4.1 (A:) chymotrypsin inhibitor WCI {Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]}
Probab=41.75 E-value=6.4 Score=28.05 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=15.7
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+++|++|.-||+||...
T Consensus 10 ~G~~l~~G~~YYIlp~~~ 27 (179)
T d1eyla_ 10 EGNLVENGGTYYLLPHIW 27 (179)
T ss_dssp TSSBCBTTCEEEEEESSG
T ss_pred CCCCccCCCcEEEEEcee
Confidence 368999999999999865
No 8
>d1r8na_ b.42.4.1 (A:) Serine protease inhibitor DrTI {Royal poinciana (Delonix regia) [TaxId: 72433]}
Probab=39.47 E-value=7.2 Score=27.94 Aligned_cols=18 Identities=17% Similarity=0.484 Sum_probs=15.7
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+++|++|.-||++|...
T Consensus 10 ~G~~l~~G~~YYIlp~~~ 27 (185)
T d1r8na_ 10 EGYPVFLGSEYYIVSAII 27 (185)
T ss_dssp TSCBCBTTSEEEEEECTT
T ss_pred CCCCccCCCcEEEEECcc
Confidence 368999999999999865
No 9
>d1wbaa_ b.42.4.1 (A:) Winged bean albumin 1 {Goa bean (Psophocarpus tetragonolobus) [TaxId: 3891]}
Probab=38.76 E-value=6.5 Score=27.73 Aligned_cols=18 Identities=28% Similarity=0.252 Sum_probs=15.6
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+++|++|.-||++|...
T Consensus 8 ~G~~l~~G~~YYI~p~~~ 25 (171)
T d1wbaa_ 8 EGNKLVNRGKYTIVSFSD 25 (171)
T ss_dssp TSCBCBTTEEEEEEETTT
T ss_pred CCCCCcCCCcEEEEEeec
Confidence 368999999999999864
No 10
>d3bx1c1 b.42.4.1 (C:1-181) Amylase/subtilisin inhibitor {Barley (Hordeum vulgare), seed [TaxId: 4513]}
Probab=37.34 E-value=8.2 Score=27.53 Aligned_cols=18 Identities=11% Similarity=0.255 Sum_probs=15.7
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+++|++|.-||++|+..
T Consensus 10 ~G~~l~~G~~YYIlp~~~ 27 (181)
T d3bx1c1 10 DGHELRADANYYVLSANR 27 (181)
T ss_dssp TSCBCBTTCEEEEEESSG
T ss_pred CCCCCcCCCcEEEEEeee
Confidence 368999999999999964
No 11
>d1avwb_ b.42.4.1 (B:) Soybean trypsin inhibitor {Soybean (Glycine max) [TaxId: 3847]}
Probab=36.34 E-value=7.5 Score=27.62 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=15.4
Q ss_pred CCCccCCCCeEEEeeCCC
Q 046004 54 PDFKLVGGNLYFLVPVPL 71 (157)
Q Consensus 54 ~d~~L~~G~~YfLlP~~~ 71 (157)
.+++|++|.-||++|+-.
T Consensus 7 ~G~~l~~G~~YYIlp~~~ 24 (177)
T d1avwb_ 7 EGNPLENGGTYYILSDIT 24 (177)
T ss_dssp TSCBCBTTEEEEEEESST
T ss_pred CCCCccCCCcEEEEEeec
Confidence 368999999999999754
No 12
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=35.51 E-value=11 Score=22.04 Aligned_cols=33 Identities=12% Similarity=0.343 Sum_probs=26.4
Q ss_pred EEEEEeCHHHHHHHHHhccCCHHHHHHHHHhhc
Q 046004 100 RIKLVISKQELEELLQKQGVSVKDMVSRIQSKQ 132 (157)
Q Consensus 100 rvkl~i~k~~L~~ll~~~~~s~e~~l~~l~~~~ 132 (157)
.+.+.+|.++|..++.-.-.++..+|+.+....
T Consensus 25 ~i~l~lt~~~lA~~~G~sRetvsr~L~~l~~~g 57 (69)
T d1i5za1 25 GMQIKITRQEIGQIVGCSRETVGRILKMLEDQN 57 (69)
T ss_dssp SCEEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred eeecCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 367889999999999865557778888887764
No 13
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=35.29 E-value=6.8 Score=23.56 Aligned_cols=36 Identities=14% Similarity=0.328 Sum_probs=29.1
Q ss_pred ceEEEEEEeCHHHHHHHHHhccCCHHHHHHHHHhhc
Q 046004 97 GVVRIKLVISKQELEELLQKQGVSVKDMVSRIQSKQ 132 (157)
Q Consensus 97 g~~rvkl~i~k~~L~~ll~~~~~s~e~~l~~l~~~~ 132 (157)
+...+.+.+|.++|..++.-.-.++-.+++.+.+..
T Consensus 23 ~~~~i~~~lt~~elA~~~g~sretvsr~l~~l~~~g 58 (80)
T d3e5ua1 23 DTYEITMPLSQKSIGEITGVHHVTVSRVLASLKREN 58 (80)
T ss_dssp TEEECCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred CCeEEeeCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 347889999999999999865557777888888764
No 14
>g1r8o.1 b.42.4.1 (A:,B:) Two-chain trypsin inhibitor {Balsam copaiba (Copaifera langsdorffii) [TaxId: 280048]}
Probab=32.60 E-value=10 Score=26.64 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=15.2
Q ss_pred CCCccC-CCCeEEEeeCCCC
Q 046004 54 PDFKLV-GGNLYFLVPVPLP 72 (157)
Q Consensus 54 ~d~~L~-~G~~YfLlP~~~~ 72 (157)
.+++|+ +|.-||++|...-
T Consensus 6 ~G~~l~~~G~~YYIlp~~~g 25 (167)
T g1r8o.1 6 DGKPIENDGAEYYILPSVRG 25 (167)
T ss_dssp TSCCCBSSSSCEEEEESSSS
T ss_pred CCCEeecCCCcEEEEEeeeC
Confidence 367898 5999999998753
No 15
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=31.67 E-value=19 Score=21.48 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=26.1
Q ss_pred EEEEEeCHHHHHHHHHhccCCHHHHHHHHHhhc
Q 046004 100 RIKLVISKQELEELLQKQGVSVKDMVSRIQSKQ 132 (157)
Q Consensus 100 rvkl~i~k~~L~~ll~~~~~s~e~~l~~l~~~~ 132 (157)
.+.+.+|.++|.+++.-.-.++..++..+....
T Consensus 25 ~i~i~lt~~elA~~lg~sr~tv~r~L~~l~~~g 57 (82)
T d2zcwa1 25 KVVLKATHDELAAAVGSVRETVTKVIGELAREG 57 (82)
T ss_dssp EEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred eEeecCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 367889999999999865557777888887653
No 16
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.80 E-value=23 Score=20.94 Aligned_cols=28 Identities=11% Similarity=0.343 Sum_probs=23.8
Q ss_pred eeEEEecCCcEEEE--eCCCcHHHHHhhcC
Q 046004 11 VIKVMKTDGKILEY--NQPIRVQDVLAEFS 38 (157)
Q Consensus 11 ~ikV~~~dG~v~e~--~~pv~a~~vm~~~P 38 (157)
++||...||+...| +...+.+.|+..|.
T Consensus 4 ~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~ 33 (77)
T d2uyzb1 4 KLKVIGQDSSEIHFKVKMTTHLKKLKESYC 33 (77)
T ss_dssp EEEEECTTCCEEEEEEETTSCTHHHHHHHH
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHH
Confidence 58999999999777 57899999998874
No 17
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=29.30 E-value=16 Score=21.08 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=23.8
Q ss_pred eCHHHHHHHHHhccCCHHHHHHHHHhhccc
Q 046004 105 ISKQELEELLQKQGVSVKDMVSRIQSKQSA 134 (157)
Q Consensus 105 i~k~~L~~ll~~~~~s~e~~l~~l~~~~~~ 134 (157)
+|+.||.+.+.-...++..++..|....-.
T Consensus 13 isr~eLa~~~gls~~TVs~~v~~L~~~GlV 42 (62)
T d2hoea1 13 VSRVELAEELGLTKTTVGEIAKIFLEKGIV 42 (62)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHHTSE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 689999999886666888888888877543
No 18
>d1dmla2 d.131.1.2 (A:170-319) UL42 {Human herpesvirus type 1 [TaxId: 10298]}
Probab=29.13 E-value=17 Score=25.26 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=13.6
Q ss_pred EEEEeCHHHHHHHHH
Q 046004 101 IKLVISKQELEELLQ 115 (157)
Q Consensus 101 vkl~i~k~~L~~ll~ 115 (157)
|-+.+||.||.+||.
T Consensus 7 v~~sLsk~QL~KiL~ 21 (150)
T d1dmla2 7 VQLRLTRPQLTKVLN 21 (150)
T ss_dssp EEEEECHHHHHHHHH
T ss_pred EEEEEcHHHHHHHHH
Confidence 678999999999995
No 19
>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.29 E-value=36 Score=23.11 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=20.1
Q ss_pred CccCCCCCCccCCCCeEEEeeCC
Q 046004 48 EIRHLRPDFKLVGGNLYFLVPVP 70 (157)
Q Consensus 48 ~~~~L~~d~~L~~G~~YfLlP~~ 70 (157)
.+.|.+-+-|.++|+-||.+..+
T Consensus 93 ~fsP~~~G~EF~pG~~YY~ISTs 115 (138)
T d1shxa1 93 LFTPFSLGFEFRPGREYFYISSA 115 (138)
T ss_dssp SCCSSTTCCCCCTTEEEEEEEEE
T ss_pred EcCCCCCCeeecCCCEEEEEEee
Confidence 45788899999999999999774
No 20
>d1wgra_ d.15.1.5 (A:) Growth factor receptor-bound protein 7, GRB-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.66 E-value=40 Score=20.96 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=24.5
Q ss_pred CCceeEEEecCC--cEEEEeCCCcHHHHHhh
Q 046004 8 EEKVIKVMKTDG--KILEYNQPIRVQDVLAE 36 (157)
Q Consensus 8 ~~~~ikV~~~dG--~v~e~~~pv~a~~vm~~ 36 (157)
+...+||...|| +...+....||.||+..
T Consensus 8 ~~~vvkv~~~dg~~k~l~V~~~tTa~eV~~~ 38 (100)
T d1wgra_ 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEM 38 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHH
T ss_pred CceEEEEEecCCCEEEEEECCCCcHHHHHHH
Confidence 467789999999 66788899999998865
No 21
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=26.24 E-value=13 Score=19.20 Aligned_cols=17 Identities=24% Similarity=0.671 Sum_probs=10.9
Q ss_pred CCCCCCcc---CCCCeEEEe
Q 046004 51 HLRPDFKL---VGGNLYFLV 67 (157)
Q Consensus 51 ~L~~d~~L---~~G~~YfLl 67 (157)
|||++.+- .-|++||+=
T Consensus 2 pLP~GWe~~~d~~G~~Yyin 21 (33)
T d2jmfa1 2 PLPPGWEIRYTAAGERFFVD 21 (33)
T ss_dssp CCCTTEEEEECTTSCEEEEE
T ss_pred ccCCCeeEEECCCCCEEEEE
Confidence 56666443 368899873
No 22
>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}
Probab=25.10 E-value=3.4 Score=24.58 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=22.6
Q ss_pred eCHHHHHHHHHhccCCHHHHHHHHHhhcc
Q 046004 105 ISKQELEELLQKQGVSVKDMVSRIQSKQS 133 (157)
Q Consensus 105 i~k~~L~~ll~~~~~s~e~~l~~l~~~~~ 133 (157)
+|+.||.+.+.-...++..++..|....-
T Consensus 21 ~sr~eLa~~~glS~~Tv~~~l~~L~~~Gl 49 (71)
T d1z05a1 21 ISRIDLSKESELAPASITKITRELIDAHL 49 (71)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 68888888887665688888888887653
No 23
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.87 E-value=39 Score=20.20 Aligned_cols=25 Identities=16% Similarity=0.551 Sum_probs=19.7
Q ss_pred eEEEecCCcEEEEeCCCcHHHHHhhc
Q 046004 12 IKVMKTDGKILEYNQPIRVQDVLAEF 37 (157)
Q Consensus 12 ikV~~~dG~v~e~~~pv~a~~vm~~~ 37 (157)
+-|..++|++.+|..| .+.+++..|
T Consensus 44 liv~s~~gk~~~f~s~-~~~~vl~ry 68 (71)
T d1egwa_ 44 LIIFNSSNKLFQYAST-DMDKVLLKY 68 (71)
T ss_dssp EEEECTTCCEEEEESS-CHHHHHHHH
T ss_pred EEEEcCCCCEEEeeCC-CHHHHHHHH
Confidence 4455579999999987 688888776
No 24
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=23.14 E-value=38 Score=20.67 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=20.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhh
Q 046004 107 KQELEELLQKQGVSVKDMVSRIQSK 131 (157)
Q Consensus 107 k~~L~~ll~~~~~s~e~~l~~l~~~ 131 (157)
.+.+.+++.+.|.+..|++.++...
T Consensus 23 ~~~l~~l~~~~G~s~~dIl~~l~~~ 47 (95)
T d1iqpa1 23 REKLREILLKQGLSGEDVLVQMHKE 47 (95)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4567888888889999999988753
No 25
>d1m2da_ c.47.1.11 (A:) Thioredoxin-like 2Fe-2S ferredoxin {Aquifex aeolicus [TaxId: 63363]}
Probab=22.77 E-value=29 Score=21.61 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=19.6
Q ss_pred ceeEEEecCCcEEEEeCCCcHHHHHhhc
Q 046004 10 KVIKVMKTDGKILEYNQPIRVQDVLAEF 37 (157)
Q Consensus 10 ~~ikV~~~dG~v~e~~~pv~a~~vm~~~ 37 (157)
..+-++.+||.....-.|=.+.+|+.+|
T Consensus 60 gP~v~i~P~~~~Y~~v~~e~v~~Iv~~h 87 (101)
T d1m2da_ 60 GPVVVVYPDGVWYGQVKPEDVDEIVEKH 87 (101)
T ss_dssp CSCEEEETTTEEECSCCGGGHHHHHHHT
T ss_pred CceEEEcCCccEEecCCHHHHHHHHHHH
Confidence 4455788999665555677777788775
No 26
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=21.91 E-value=18 Score=21.43 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=27.4
Q ss_pred ceEEEEEEeCHHHHHHHHHhccCCHHHHHHHHHhhc
Q 046004 97 GVVRIKLVISKQELEELLQKQGVSVKDMVSRIQSKQ 132 (157)
Q Consensus 97 g~~rvkl~i~k~~L~~ll~~~~~s~e~~l~~l~~~~ 132 (157)
+...+++.+|.++|..++.-.-.++-..+..+....
T Consensus 23 ~~~~i~~~~t~~eiA~~lG~sretvsr~l~~l~~~g 58 (80)
T d1ft9a1 23 GGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEG 58 (80)
T ss_dssp -CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred CCeEEecCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 345689999999999999865456777777777654
No 27
>d1u3em2 d.285.1.1 (M:106-174) Intron-encoded homing endonuclease I-HmuI {Bacteriophage SP01 [TaxId: 10685]}
Probab=20.36 E-value=31 Score=20.65 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=25.3
Q ss_pred CCceeEEEecCCcEEEEeCCCcHHHHHhh
Q 046004 8 EEKVIKVMKTDGKILEYNQPIRVQDVLAE 36 (157)
Q Consensus 8 ~~~~ikV~~~dG~v~e~~~pv~a~~vm~~ 36 (157)
..+.|-||.+||.-..|...-.|+++|--
T Consensus 14 nekpIyvis~sGh~y~f~s~~kAaelLGL 42 (69)
T d1u3em2 14 NQKPIIVISPDGIEKEYPSTKCACEELGL 42 (69)
T ss_dssp TCCCEEEECTTSCEEEESCHHHHHHHHTC
T ss_pred ccCCEEEEcCCCceEEcchHHHHHHHhCc
Confidence 47889999999999999999999998743
No 28
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.10 E-value=50 Score=20.00 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=19.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHhh
Q 046004 107 KQELEELLQKQGVSVKDMVSRIQSK 131 (157)
Q Consensus 107 k~~L~~ll~~~~~s~e~~l~~l~~~ 131 (157)
.+.+.+++.+.|.|..|++.++.+.
T Consensus 22 ~~~l~~l~~~~G~s~~dIl~~l~~~ 46 (95)
T d1sxjc1 22 HYTLNKVRSAKGLALIDLIEGIVKI 46 (95)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4567788888889999999888764
Done!