BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046005
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YX0|A Chain A, Crystal Structure Of P. Horikoshii Tyw1
Length = 342
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 3 LKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLTME 62
L+ +RD RTV RLTLVKG N E Y+KL P FVE K + G S ++LT+
Sbjct: 229 LELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSR-NRLTIN 287
Query: 63 NVPWHADVKAFSEALALRSEGEYEVACEHVHSCCVLLAK 101
N+P H D++ F+EAL G Y + E+ S VL+ +
Sbjct: 288 NMPSHQDIREFAEALVKHLPG-YHIEDEYEPSRVVLIMR 325
>pdb|2Z2U|A Chain A, Crystal Structure Of Archaeal Tyw1
Length = 311
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1 DSLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLT 60
++L L++K+ RT R TL++G+N +DI + +L+ + F+E+K + G S +L
Sbjct: 207 NTLDILKEKK-RTCIRTTLIRGYN-DDILKFVELYERADVHFIELKSYMHVGYSQ-KRLK 263
Query: 61 MENVPWHADVKAFSEAL 77
E++ H ++ ++ L
Sbjct: 264 KEDMLQHDEILKLAKML 280
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 23 WNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLTMENVP--WHADVKAFSEALAL 79
W+T +E Y +L + PD V S S ++EN+P W +VK F + +
Sbjct: 61 WDTAGLEDYDRLRPLSYPD----TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI 115
>pdb|2YIB|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 770
Score = 26.6 bits (57), Expect = 7.5, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 17 LTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCG 52
+ LV GWN +E +K S+ +E+KG+ G
Sbjct: 616 IRLVGGWNNPLLETAAKHMSLDKRKRLEVKGIDVTG 651
>pdb|1ZVM|A Chain A, Crystal Structure Of Human Cd38: Cyclic-Adp-Ribosyl
SynthetaseNAD+ Glycohydrolase
pdb|1ZVM|B Chain B, Crystal Structure Of Human Cd38: Cyclic-Adp-Ribosyl
SynthetaseNAD+ Glycohydrolase
pdb|1ZVM|C Chain C, Crystal Structure Of Human Cd38: Cyclic-Adp-Ribosyl
SynthetaseNAD+ Glycohydrolase
pdb|1ZVM|D Chain D, Crystal Structure Of Human Cd38: Cyclic-Adp-Ribosyl
SynthetaseNAD+ Glycohydrolase
Length = 256
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 48 VTYCGSSATSKLTMENVP-WHAD-----VKAFSEALALRSEGEYEVACEHVH 93
+T+CG ATSK+ ++ P W D V F + ++ R E AC+ VH
Sbjct: 113 LTWCGEFATSKINYQSCPDWRKDCSNNPVSVFWKTVSRRFA---EAACDVVH 161
>pdb|3DZJ|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain E226q
Mutant, Nmn Complex
pdb|3DZJ|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain E226q
Mutant, Nmn Complex
Length = 262
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 48 VTYCGSSATSKLTMENVP-WHAD-----VKAFSEALALRSEGEYEVACEHVH 93
+T+CG ATSK+ ++ P W D V F + ++ R E AC+ VH
Sbjct: 119 LTWCGEFATSKINYQSCPDWRKDCSNNPVSVFWKTVSRRFA---EAACDVVH 167
>pdb|1YH3|A Chain A, Crystal Structure Of Human Cd38 Extracellular Domain
pdb|1YH3|B Chain B, Crystal Structure Of Human Cd38 Extracellular Domain
Length = 256
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 9/52 (17%)
Query: 48 VTYCGSSATSKLTMENVP-WHAD-----VKAFSEALALRSEGEYEVACEHVH 93
+T+CG ATSK+ ++ P W D V F + ++ R E AC+ VH
Sbjct: 113 LTWCGEFATSKINYQSCPDWRKDCSNNPVSVFWKTVSRRFA---EAACDVVH 161
>pdb|2YI8|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI8|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YI9|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YI9|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus In Complex With Magnesium
pdb|2YIA|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|D Chain D, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|E Chain E, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|F Chain F, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|G Chain G, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIA|H Chain H, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
Length = 799
Score = 26.2 bits (56), Expect = 8.4, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 17 LTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCG 52
+ LV GWN +E +K S+ +E+KG+ G
Sbjct: 616 IRLVGGWNNPLLETAAKHMSLDKRKRLEVKGIDVTG 651
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 26.2 bits (56), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 77 LALRSEGEYEVACEHVHSCCVLLAKTERFKVNGQWFTWIDYEKFHDLVASGRPFSSKDYM 136
LA + G E + V L E+ V G+ F D+E+ H S P+ S Y+
Sbjct: 256 LAKQKNGILAQKVESKINTDVQLDSQEKIGVKGELFQEDDHEESH----SDFPYGSFPYV 311
Query: 137 AASPHW 142
A HW
Sbjct: 312 ARPVHW 317
>pdb|2YIB|A Chain A, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|B Chain B, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|2YIB|C Chain C, Structure Of The Rna Polymerase Vp1 From Infectious
Pancreatic Necrosis Virus
pdb|3ZED|A Chain A, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|B Chain B, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
pdb|3ZED|C Chain C, X-ray Structure Of The Birnavirus Vp1-vp3 Complex
Length = 853
Score = 26.2 bits (56), Expect = 8.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 17 LTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCG 52
+ LV GWN +E +K S+ +E+KG+ G
Sbjct: 616 IRLVGGWNNPLLETAAKHMSLDKRKRLEVKGIDVTG 651
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,310,854
Number of Sequences: 62578
Number of extensions: 206542
Number of successful extensions: 493
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 20
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)