BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046005
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RXN5|TYW1_ARATH tRNA wybutosine-synthesizing protein 1 homolog OS=Arabidopsis
thaliana GN=TYW1 PE=2 SV=1
Length = 647
Score = 300 bits (769), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 135/165 (81%), Positives = 152/165 (92%)
Query: 1 DSLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLT 60
DSLKAL++KQQRTVYRLTLVKGWNTE+++AY LFSIG PDF+EIKGVTYCGSSATSKLT
Sbjct: 474 DSLKALQEKQQRTVYRLTLVKGWNTEELDAYFNLFSIGKPDFIEIKGVTYCGSSATSKLT 533
Query: 61 MENVPWHADVKAFSEALALRSEGEYEVACEHVHSCCVLLAKTERFKVNGQWFTWIDYEKF 120
MENVPWH DVKAFSEAL+L+S GEYEVACEH HSCCVLL +TE+FKV+G+WFTWIDYEKF
Sbjct: 534 MENVPWHTDVKAFSEALSLKSNGEYEVACEHAHSCCVLLGRTEKFKVDGKWFTWIDYEKF 593
Query: 121 HDLVASGRPFSSKDYMAASPHWAVYGAEEGGFDPDQSRYRKERHH 165
HDLVASG PF+S DYMA +P WAVYGA+EGGFDP Q RY+KER+H
Sbjct: 594 HDLVASGEPFTSTDYMAQTPSWAVYGAQEGGFDPGQLRYKKERNH 638
>sp|Q8H8N3|TYW1_ORYSJ tRNA wybutosine-synthesizing protein 1 homolog OS=Oryza sativa
subsp. japonica GN=TYW1 PE=2 SV=1
Length = 653
Score = 289 bits (740), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 129/168 (76%), Positives = 150/168 (89%)
Query: 1 DSLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLT 60
DSLK+L DK QRTVYRLTLVKGWN E+I+ Y+KL S+G PDF+EIKGVTYCGSSATSKLT
Sbjct: 482 DSLKSLHDKDQRTVYRLTLVKGWNAEEIDGYAKLLSLGQPDFIEIKGVTYCGSSATSKLT 541
Query: 61 MENVPWHADVKAFSEALALRSEGEYEVACEHVHSCCVLLAKTERFKVNGQWFTWIDYEKF 120
MENVPWH+DVK FSEALAL+S G YEVACEH HSCCVLLAK ++FK+NG+W TWIDY++F
Sbjct: 542 MENVPWHSDVKDFSEALALKSGGVYEVACEHAHSCCVLLAKVDKFKINGKWHTWIDYDRF 601
Query: 121 HDLVASGRPFSSKDYMAASPHWAVYGAEEGGFDPDQSRYRKERHHKSS 168
H+LV SG+PF S+DYMA +P WAVYGAEEGGFDPDQSRY+KER H ++
Sbjct: 602 HELVTSGKPFRSQDYMALTPSWAVYGAEEGGFDPDQSRYKKERRHGAA 649
>sp|Q9NV66|TYW1_HUMAN tRNA wybutosine-synthesizing protein 1 homolog OS=Homo sapiens
GN=TYW1 PE=2 SV=2
Length = 732
Score = 200 bits (509), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 127/173 (73%), Gaps = 8/173 (4%)
Query: 1 DSLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLT 60
DSLKAL KQQRTVYRLTLVK WN ++++AY++L S+GNPDF+E+KGVTYCG S+ S LT
Sbjct: 558 DSLKALAVKQQRTVYRLTLVKAWNVDELQAYAQLVSLGNPDFIEVKGVTYCGESSASSLT 617
Query: 61 MENVPWHADVKAFSEALALRSEGEYEVACEHVHSCCVLLAKTERFKVNGQWFTWIDYEKF 120
M +VPWH +V F L + EYE+ACEH HS C+L+A +FK+ G+W+TWIDY +F
Sbjct: 618 MAHVPWHEEVVQFVHEL-VDLIPEYEIACEHEHSNCLLIAH-RKFKIGGEWWTWIDYNRF 675
Query: 121 HDLV------ASGRPFSSKDYMAASPHWAVYGAEEGGFDPDQSRYRKERHHKS 167
+L+ + FS+KDYMA +PHWA++GA E GFDP +R++++ K+
Sbjct: 676 QELIQEYEDSGGSKTFSAKDYMARTPHWALFGASERGFDPKDTRHQRKNKSKA 728
>sp|Q08C92|TYW1_DANRE tRNA wybutosine-synthesizing protein 1 homolog OS=Danio rerio
GN=tyw1 PE=2 SV=1
Length = 730
Score = 199 bits (507), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 93/172 (54%), Positives = 126/172 (73%), Gaps = 8/172 (4%)
Query: 1 DSLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLT 60
DSL+AL +KQQRTVYRLTLVK WN ++++AY+ L ++G PDF+E+KGVTYCG S+ S LT
Sbjct: 556 DSLRALGEKQQRTVYRLTLVKAWNVDELKAYADLIALGQPDFIEVKGVTYCGESSASSLT 615
Query: 61 MENVPWHADVKAFSEALALRSEGEYEVACEHVHSCCVLLAKTERFKVNGQWFTWIDYEKF 120
M NVPWH +V F + LA +YE+ACEH HS C+LLA +FKV+G+W+TWIDYE+F
Sbjct: 616 MANVPWHEEVIYFVQQLA-NLLPDYEIACEHEHSNCLLLA-NHKFKVDGEWWTWIDYERF 673
Query: 121 HDLV------ASGRPFSSKDYMAASPHWAVYGAEEGGFDPDQSRYRKERHHK 166
+L+ + FS+ DYMA +P WAV+GA E GFDP +R++++ K
Sbjct: 674 QELIQQYEESGGTKNFSAMDYMAKTPSWAVFGAGERGFDPTDTRFQRKNKTK 725
>sp|Q8BJM7|TYW1_MOUSE tRNA wybutosine-synthesizing protein 1 homolog OS=Mus musculus
GN=Tyw1 PE=1 SV=1
Length = 721
Score = 199 bits (506), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 94/172 (54%), Positives = 126/172 (73%), Gaps = 8/172 (4%)
Query: 1 DSLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLT 60
DSLKAL KQQRTVYRLTLVK WN ++++AY++L S+GNPDF+E+KGVTYCG SA S LT
Sbjct: 547 DSLKALSAKQQRTVYRLTLVKCWNVDELQAYAELVSLGNPDFIEVKGVTYCGESAASSLT 606
Query: 61 MENVPWHADVKAFSEALALRSEGEYEVACEHVHSCCVLLAKTERFKVNGQWFTWIDYEKF 120
M NVPWH +V F L + +YEVACEH HS C+L+ ++FK++G+W+TWI+Y +F
Sbjct: 607 MANVPWHEEVVRFVREL-VDLLPDYEVACEHEHSNCLLIGH-KKFKIDGEWWTWINYSRF 664
Query: 121 HDLV------ASGRPFSSKDYMAASPHWAVYGAEEGGFDPDQSRYRKERHHK 166
+LV + FSS+DYMA +P WA++GA E GFDP +RY+++ K
Sbjct: 665 QELVLQYEESGGSKTFSSRDYMARTPQWALFGARERGFDPKDTRYQRKNKTK 716
>sp|Q5REF9|TYW1_PONAB tRNA wybutosine-synthesizing protein 1 homolog OS=Pongo abelii
GN=TYW1 PE=2 SV=1
Length = 732
Score = 198 bits (504), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 129/173 (74%), Gaps = 8/173 (4%)
Query: 1 DSLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLT 60
DSLKAL KQQRTVYRLTLVK WN ++++AY++L S+GNPDF+E+KGVTYCG S+ S LT
Sbjct: 558 DSLKALAVKQQRTVYRLTLVKAWNVDELQAYAQLVSLGNPDFIEVKGVTYCGESSASSLT 617
Query: 61 MENVPWHADVKAFSEALALRSEGEYEVACEHVHSCCVLLAKTERFKVNGQWFTWIDYEKF 120
M +VPWH +V F L + +YE+ACEH HS C+L+A ++FK+ G+W+TWIDY +F
Sbjct: 618 MAHVPWHEEVVQFVCEL-VDLIPDYEIACEHEHSNCLLIAH-KKFKIGGEWWTWIDYNRF 675
Query: 121 HDLV------ASGRPFSSKDYMAASPHWAVYGAEEGGFDPDQSRYRKERHHKS 167
+L+ + + FS+KDYMA +PHWA++GA E GFDP +R++++ K+
Sbjct: 676 QELIQEYEDSSGSKTFSAKDYMARTPHWALFGANERGFDPKDTRHQRKNKSKA 728
>sp|Q2KHP8|TYW1_XENLA tRNA wybutosine-synthesizing protein 1 homolog OS=Xenopus laevis
GN=tyw1 PE=2 SV=1
Length = 735
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/172 (52%), Positives = 126/172 (73%), Gaps = 8/172 (4%)
Query: 1 DSLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLT 60
DSLKAL +KQQRTVYRLTLVK WN ++++AY+ L ++G PDF+E+KGVTYCG S+ S LT
Sbjct: 561 DSLKALAEKQQRTVYRLTLVKAWNVDELKAYADLVALGLPDFIEVKGVTYCGESSASNLT 620
Query: 61 MENVPWHADVKAFSEALALRSEGEYEVACEHVHSCCVLLAKTERFKVNGQWFTWIDYEKF 120
M NVPWH +V F E L + +YEVACEH HS C+L+A ++FK+NG+W TWIDYE+F
Sbjct: 621 MANVPWHEEVIRFVEEL-VDLLPDYEVACEHEHSNCMLIAH-KKFKINGEWCTWIDYERF 678
Query: 121 HDLVAS------GRPFSSKDYMAASPHWAVYGAEEGGFDPDQSRYRKERHHK 166
+L+ + R F++ DY+A +P WA++G+ E GFDP R++++ K
Sbjct: 679 QELIQAFGESKGSRTFTALDYVAKTPEWALFGSRERGFDPLDKRFQRKNKTK 730
>sp|Q6NUM6|TYW1B_HUMAN tRNA wybutosine-synthesizing protein 1 homolog B OS=Homo sapiens
GN=TYW1B PE=2 SV=2
Length = 668
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 90/173 (52%), Positives = 124/173 (71%), Gaps = 8/173 (4%)
Query: 1 DSLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLT 60
DSLKAL KQQRTVYRL LVK WN ++++AY++L S+GNPDF+E+KGVTYC S+ S LT
Sbjct: 494 DSLKALAVKQQRTVYRLMLVKAWNVDELQAYAQLVSLGNPDFIEVKGVTYCRESSASSLT 553
Query: 61 MENVPWHADVKAFSEALALRSEGEYEVACEHVHSCCVLLAKTERFKVNGQWFTWIDYEKF 120
M +VPWH +V F L + EYE+ACEH HS C+L+A +FK+ G+W+TWIDY +F
Sbjct: 554 MAHVPWHEEVVQFVREL-VDLIPEYEIACEHEHSNCLLIAH-RKFKIGGEWWTWIDYNRF 611
Query: 121 HDLV------ASGRPFSSKDYMAASPHWAVYGAEEGGFDPDQSRYRKERHHKS 167
+L+ + FS+KDYMA +PHWA++GA E FDP +R++++ K+
Sbjct: 612 QELIQEYEDSGGSKTFSAKDYMARTPHWALFGANERSFDPKDTRHQRKNKSKA 664
>sp|O59761|TYW1_SCHPO tRNA wybutosine-synthesizing protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tyw1 PE=3 SV=1
Length = 688
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/174 (45%), Positives = 120/174 (68%), Gaps = 10/174 (5%)
Query: 3 LKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLTME 62
L+ LR+K+QRTVYR+TLVKG+N E I+ Y++L +G P F+E+KGVTY G+S S LTM+
Sbjct: 501 LEILREKRQRTVYRMTLVKGFNMEQIKEYTELIRLGVPCFIEVKGVTYSGNSDQSPLTMK 560
Query: 63 NVPWHADVKAFSEALA------LRSEG-EYEVACEHVHSCCVLLAKTERFKVNGQWFTWI 115
NVP++ +V F + L L+ G YE+A EH HSC +L+A+T FK +G W T I
Sbjct: 561 NVPYYEEVIDFVKKLIEYIDIHLQDLGVRYEIAAEHAHSCSILVAQTA-FKKDGHWHTHI 619
Query: 116 DYEKFHDLVASGRPFSSKDYMAASPHWAVYGAEEGGFDPDQSRYRKERHHKSSR 169
DY KF +L+ + + F DYMA++P +A++G GGF P+ +R+ +++ ++S+
Sbjct: 620 DYPKFFELIRTKKDFGPFDYMASTPDFAMFG--NGGFSPEDTRFHRKKKTQTSK 671
>sp|Q08960|TYW1_YEAST tRNA wybutosine-synthesizing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=TYW1 PE=1 SV=1
Length = 810
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 115/172 (66%), Gaps = 12/172 (6%)
Query: 3 LKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSS--ATSKLT 60
LK +++ QRTV+RLTLVKG+N D+ AY+ L G P F+E+KG T+ GSS + LT
Sbjct: 626 LKTVQN-HQRTVFRLTLVKGFNMGDVSAYADLVQRGLPGFIEVKGATFSGSSDGNGNPLT 684
Query: 61 MENVPWHAD----VKAFSEALALRSEGEYEVACEHVHSCCVLLAKTERFKVNGQWFTWID 116
M+N+P++ + VKAF+ L R Y++A EH HS C+L+A T +FK+NG+W T ID
Sbjct: 685 MQNIPFYEECVKFVKAFTTELQRRGL-HYDLAAEHAHSNCLLIADT-KFKINGEWHTHID 742
Query: 117 YEKFHDLVASGRPFSSKDYMAASPHWAVYGAEEGGFDPDQSR-YRKERHHKS 167
++KF L+ SG+ F+ DY+ +P WA++G GGF P +R YRK++ ++
Sbjct: 743 FDKFFVLLNSGKDFTYMDYLEKTPEWALFG--NGGFAPGNTRVYRKDKKKQN 792
>sp|O59412|TYW1_PYRHO tRNA wyosine derivatives biosynthesis protein Taw1 OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=taw1 PE=1 SV=1
Length = 342
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 3 LKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLTME 62
L+ +RD RTV RLTLVKG N E Y+KL P FVE K + G S ++LT+
Sbjct: 229 LELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSR-NRLTIN 287
Query: 63 NVPWHADVKAFSEALALRSEGEYEVACEHVHSCCVLLAK 101
N+P H D++ F+EAL G Y + E+ S VL+ +
Sbjct: 288 NMPSHQDIREFAEALVKHLPG-YHIEDEYEPSRVVLIMR 325
>sp|Q57705|TYW1_METJA tRNA wyosine derivatives biosynthesis protein Taw1
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=taw1 PE=1
SV=1
Length = 311
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 1 DSLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLT 60
++L L++K+ RT R TL++G+N +DI + +L+ + F+E+K + G S +L
Sbjct: 207 NTLDILKEKK-RTCIRTTLIRGYN-DDILKFVELYERADVHFIELKSYMHVGYSQ-KRLK 263
Query: 61 MENVPWHADVKAFSEAL 77
E++ H ++ ++ L
Sbjct: 264 KEDMLQHDEILKLAKML 280
>sp|P25798|FLIF_ECOLI Flagellar M-ring protein OS=Escherichia coli (strain K12) GN=fliF
PE=3 SV=3
Length = 552
Score = 30.0 bits (66), Expect = 7.2, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 52 GSSATSKLTMENVPWHADVKAFSEALALRSEGEYEVACEHVHSCCVLLAKTERFKVNGQW 111
G + S+LT N+P+ FSEA G EV + VH + LA+ K
Sbjct: 60 GGAIVSQLTQMNIPYR-----FSEA-----SGAIEVPADKVHELRLRLAQQGLPKGGAVG 109
Query: 112 FTWIDYEKF 120
F +D EKF
Sbjct: 110 FELLDQEKF 118
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,537,969
Number of Sequences: 539616
Number of extensions: 2403845
Number of successful extensions: 5078
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5042
Number of HSP's gapped (non-prelim): 14
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)