Query 046005
Match_columns 169
No_of_seqs 177 out of 246
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 13:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z2u_A UPF0026 protein MJ0257; 99.6 2.6E-15 8.8E-20 124.0 7.9 101 2-108 208-308 (311)
2 2yx0_A Radical SAM enzyme; pre 99.5 2.2E-14 7.6E-19 120.6 9.1 103 2-107 228-330 (342)
3 3can_A Pyruvate-formate lyase- 96.4 0.005 1.7E-07 46.5 5.7 79 2-80 84-174 (182)
4 3c8f_A Pyruvate formate-lyase 95.7 0.021 7E-07 43.8 6.0 83 2-87 152-243 (245)
5 3rfa_A Ribosomal RNA large sub 92.4 0.28 9.7E-06 43.5 6.9 62 12-80 274-337 (404)
6 1tv8_A MOAA, molybdenum cofact 91.0 0.65 2.2E-05 38.3 7.3 70 2-76 151-222 (340)
7 1vkf_A Glycerol uptake operon 52.3 12 0.00042 30.1 3.7 39 5-46 97-135 (188)
8 3kts_A Glycerol uptake operon 43.5 18 0.0006 29.2 3.3 41 3-46 94-134 (192)
9 1ygs_A SMAD4; tumor suppressor 41.8 5.5 0.00019 33.2 0.0 30 13-46 181-210 (234)
10 1dd1_A SMAD4; B-sheet sandwich 40.5 6.2 0.00021 33.7 0.1 30 13-46 215-244 (268)
11 3gmj_D Protein mothers against 40.3 6.2 0.00021 33.2 0.1 30 13-46 190-219 (245)
12 1khx_A SMAD2; TGF-beta signali 38.3 6.1 0.00021 32.9 -0.2 31 12-46 171-201 (227)
13 2a5h_A L-lysine 2,3-aminomutas 31.5 34 0.0012 29.6 3.3 37 2-38 244-282 (416)
14 2ggz_A Guanylyl cyclase-activa 25.6 16 0.00053 27.3 0.1 33 115-147 175-207 (211)
15 2wvv_A Alpha-L-fucosidase; alp 22.8 1.1E+02 0.0039 26.9 5.2 62 19-80 69-137 (450)
16 1wa3_A 2-keto-3-deoxy-6-phosph 20.3 71 0.0024 23.9 3.0 29 17-45 13-41 (205)
No 1
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=99.58 E-value=2.6e-15 Score=123.98 Aligned_cols=101 Identities=30% Similarity=0.494 Sum_probs=82.1
Q ss_pred hhhhhhcCCCCeEEEEeeecccCccCHHHHHHHHhhcCCCeEEEcceeecccCCCCCCCCCCCCChHHHHHHHHHHHHhc
Q 046005 2 SLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLTMENVPWHADVKAFSEALALRS 81 (169)
Q Consensus 2 sL~iL~~k~~RTV~RlTLVKg~Nm~~~~~YA~Li~~g~PdFIEvKgyt~~G~S~~~rLtm~NmP~heEV~~Fa~~L~~~~ 81 (169)
+|+.|++.+ +..+|+|+++|+|+ +++++++++....|++|+++.||.+|.++ .+|.+.++|.++|+.+|++.|.+..
T Consensus 208 ~i~~l~~~g-~v~i~~~~~~g~n~-~~~~~~~~~~~~~~~~i~l~~~~p~g~~~-~~~~~~~~~~~~e~~~~~~~l~~~~ 284 (311)
T 2z2u_A 208 TLDILKEKK-RTCIRTTLIRGYND-DILKFVELYERADVHFIELKSYMHVGYSQ-KRLKKEDMLQHDEILKLAKMLDENS 284 (311)
T ss_dssp HHHHHTTSS-SEEEEEEECTTTTC-CGGGTHHHHHHHTCSEEEEEECC-------------CCCCHHHHHHHHHHHHTSS
T ss_pred HHHHHHhcC-CEEEEEEEECCcch-hHHHHHHHHHHcCCCEEEEEeeEEccccc-cccccccCCCHHHHHHHHHHHHHhc
Confidence 567777777 89999999999999 99999999999999999999999999987 5688889999999999999999853
Q ss_pred CCCceEeecCccceEEEeeeccccccC
Q 046005 82 EGEYEVACEHVHSCCVLLAKTERFKVN 108 (169)
Q Consensus 82 ~~~Y~i~~Eh~~Sr~vLLa~~~kf~i~ 108 (169)
+|.+.++|++|+|+|+++ .+|+|+
T Consensus 285 --g~~~~~~~~~~~~~l~~~-~~~~~~ 308 (311)
T 2z2u_A 285 --SYKLIDDSEDSRVALLQN-ENRKIN 308 (311)
T ss_dssp --SEEEEEEEGGGTEEEEEE-TTSCCC
T ss_pred --CceEEeccCcceEEEEec-CCccCC
Confidence 799999999999999999 688886
No 2
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=99.53 E-value=2.2e-14 Score=120.60 Aligned_cols=103 Identities=39% Similarity=0.529 Sum_probs=87.9
Q ss_pred hhhhhhcCCCCeEEEEeeecccCccCHHHHHHHHhhcCCCeEEEcceeecccCCCCCCCCCCCCChHHHHHHHHHHHHhc
Q 046005 2 SLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLTMENVPWHADVKAFSEALALRS 81 (169)
Q Consensus 2 sL~iL~~k~~RTV~RlTLVKg~Nm~~~~~YA~Li~~g~PdFIEvKgyt~~G~S~~~rLtm~NmP~heEV~~Fa~~L~~~~ 81 (169)
+|+.|++.+.+..+|+|+++|.|++++++++++++..+|++|+++.|+.+|.+. .+|...++|.++++.+|++.|.+.+
T Consensus 228 ~i~~l~~~g~~v~i~~~l~~g~n~~~~~~l~~~l~~~~~~~i~l~~~~~~~~~~-~~l~~~~~~~~e~~~~~~~~l~~~l 306 (342)
T 2yx0_A 228 FLELMRDLPTRTVVRLTLVKGENMHSPEKYAKLILKARPMFVEAKAYMFVGYSR-NRLTINNMPSHQDIREFAEALVKHL 306 (342)
T ss_dssp HHHHHTTCSSEEEEEEEECTTTTCCCHHHHHHHHHHHCCSEEEEEECC-------CCCCGGGSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCEEEEEeeeecCCCc-ccccccCCCCHHHHHHHHHHHHHhc
Confidence 567777777889999999999999999999999999999999999999999987 5888888999999999999999884
Q ss_pred CCCceEeecCccceEEEeeecccccc
Q 046005 82 EGEYEVACEHVHSCCVLLAKTERFKV 107 (169)
Q Consensus 82 ~~~Y~i~~Eh~~Sr~vLLa~~~kf~i 107 (169)
++|+|++++++|+||||++. +|..
T Consensus 307 -~~~~I~~~~~~~~~vl~~~~-~~~~ 330 (342)
T 2yx0_A 307 -PGYHIEDEYEPSRVVLIMRD-DVDP 330 (342)
T ss_dssp -TTEEEEEEEGGGTEEEEEET-TSEE
T ss_pred -cCCceeeccccceEEEEecc-cccc
Confidence 68999999999999999994 5654
No 3
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=96.44 E-value=0.005 Score=46.54 Aligned_cols=79 Identities=11% Similarity=0.180 Sum_probs=51.8
Q ss_pred hhhhhhcCCCCeEEEEeeecccCc--cCHHHHHHHHhhc-CC-CeEEEcceeecccCCCCCCC----CCCC--CChHH--
Q 046005 2 SLKALRDKQQRTVYRLTLVKGWNT--EDIEAYSKLFSIG-NP-DFVEIKGVTYCGSSATSKLT----MENV--PWHAD-- 69 (169)
Q Consensus 2 sL~iL~~k~~RTV~RlTLVKg~Nm--~~~~~YA~Li~~g-~P-dFIEvKgyt~~G~S~~~rLt----m~Nm--P~heE-- 69 (169)
.|+.|.+.+.+..+|+|+++|+|. ++++..++++..- .+ +.|.+-.|+-+|.+....|. +.++ |..++
T Consensus 84 ~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~~~~~~l~~~y~~~~~~~~~~e~~~ 163 (182)
T 3can_A 84 NIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGKGKHAKLGSIYNPKGYKMQTPSEEV 163 (182)
T ss_dssp HHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC------------------CCBCCCHHH
T ss_pred HHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCHHHHHHhCCcCcccCCCCCCHHHHH
Confidence 456666667789999999999986 5788999988876 67 88999999988876533343 3333 45566
Q ss_pred HHHHHHHHHHh
Q 046005 70 VKAFSEALALR 80 (169)
Q Consensus 70 V~~Fa~~L~~~ 80 (169)
+.+|++.+.+.
T Consensus 164 l~~~~~~~~~~ 174 (182)
T 3can_A 164 QQQCIQILTDY 174 (182)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 88888777654
No 4
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=95.69 E-value=0.021 Score=43.77 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=59.3
Q ss_pred hhhhhhcCCCCeEEEEeeecccCc--cCHHHHHHHHhhcCC-CeEEEcceeecccCC------CCCCCCCCCCChHHHHH
Q 046005 2 SLKALRDKQQRTVYRLTLVKGWNT--EDIEAYSKLFSIGNP-DFVEIKGVTYCGSSA------TSKLTMENVPWHADVKA 72 (169)
Q Consensus 2 sL~iL~~k~~RTV~RlTLVKg~Nm--~~~~~YA~Li~~g~P-dFIEvKgyt~~G~S~------~~rLtm~NmP~heEV~~ 72 (169)
.++.|++.+-+..+++++++|+|. +++++.++++..-.| ++|.+-.+.-.|.+. ...+.--..|..+++.+
T Consensus 152 ~i~~l~~~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 231 (245)
T 3c8f_A 152 FAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMER 231 (245)
T ss_dssp HHHHHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSHHHHHHTTCCCTTTTCCCCCHHHHHH
T ss_pred HHHHHHhcCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccChhHHHhhCcccccccCCCCCHHHHHH
Confidence 456666666778899999999985 678889998888777 888887777666541 11222234688899988
Q ss_pred HHHHHHHhcCCCceE
Q 046005 73 FSEALALRSEGEYEV 87 (169)
Q Consensus 73 Fa~~L~~~~~~~Y~i 87 (169)
+.+.+.+. |+.+
T Consensus 232 ~~~~~~~~---G~~v 243 (245)
T 3c8f_A 232 VKGILEQY---GHKV 243 (245)
T ss_dssp HHHHHHTT---TCCB
T ss_pred HHHHHHhc---CCee
Confidence 88777654 4554
No 5
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A*
Probab=92.39 E-value=0.28 Score=43.50 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=47.5
Q ss_pred CeEEEEeeecccCcc--CHHHHHHHHhhcCCCeEEEcceeecccCCCCCCCCCCCCChHHHHHHHHHHHHh
Q 046005 12 RTVYRLTLVKGWNTE--DIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLTMENVPWHADVKAFSEALALR 80 (169)
Q Consensus 12 RTV~RlTLVKg~Nm~--~~~~YA~Li~~g~PdFIEvKgyt~~G~S~~~rLtm~NmP~heEV~~Fa~~L~~~ 80 (169)
|..||.+||+|+|+. ++++.|+++.. .|..|.+=-|+-.+.+. -..|..+++.+|++.|.+.
T Consensus 274 ~V~ie~vLI~GvNDs~e~~~~La~ll~~-l~~~VnLIpynP~~~~~------~~~ps~e~i~~f~~iL~~~ 337 (404)
T 3rfa_A 274 RVTIEYVMLDHVNDGTEHAHQLAELLKD-TPCKINLIPWNPFPGAP------YGRSSNSRIDRFSKVLMSY 337 (404)
T ss_dssp CEEEEEEEBTTTTCSHHHHHHHHHHTTT-SCEEEEEEECCCCTTCC------CCBCCHHHHHHHHHHHHHT
T ss_pred cEEEEEEEecCCCCCHHHHHHHHHHHHc-CCCcEEEEeccCCCCCC------CCCCCHHHHHHHHHHHHHc
Confidence 899999999999985 68899999865 45667766666433221 2468899999999998775
No 6
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=91.02 E-value=0.65 Score=38.27 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=48.9
Q ss_pred hhhhhhcCCCCeEEEEeeecccCccCHHHHHHHHhhcCCC--eEEEcceeecccCCCCCCCCCCCCChHHHHHHHHH
Q 046005 2 SLKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPD--FVEIKGVTYCGSSATSKLTMENVPWHADVKAFSEA 76 (169)
Q Consensus 2 sL~iL~~k~~RTV~RlTLVKg~Nm~~~~~YA~Li~~g~Pd--FIEvKgyt~~G~S~~~rLtm~NmP~heEV~~Fa~~ 76 (169)
.++.|.+.+-...+.+++++|.|.+++...++++..-.++ ||| +|-+|... ....+.+...+|+.++..+
T Consensus 151 ~i~~l~~~g~~v~i~~vv~~g~n~~ei~~~~~~~~~~g~~~~~i~---~~p~~~~~--~~~~~~~~~~~e~~~~l~~ 222 (340)
T 1tv8_A 151 QIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIE---FMDVGNDN--GWDFSKVVTKDEMLTMIEQ 222 (340)
T ss_dssp HHHHHHHTTCEEEEEEEECTTTTGGGHHHHHHHHHHTTCCEEEEE---CCCBCSSS--SBCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEE---eeEcCCCc--cchhhcCCCHHHHHHHHHh
Confidence 3556666665677899999999999999999999887766 676 56666543 2233445556777665544
No 7
>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1
Probab=52.26 E-value=12 Score=30.14 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=31.4
Q ss_pred hhhcCCCCeEEEEeeecccCccCHHHHHHHHhhcCCCeEEEc
Q 046005 5 ALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIK 46 (169)
Q Consensus 5 iL~~k~~RTV~RlTLVKg~Nm~~~~~YA~Li~~g~PdFIEvK 46 (169)
..++.+--|+.|+-|+-+ ...+.-+++|+..+||+||+=
T Consensus 97 ~Akk~GL~tIqR~FliDs---~al~~~~~~I~~~kPD~iEiL 135 (188)
T 1vkf_A 97 VAKKNGIPAVLRFFALDS---KAVERGIEQIETLGVDVVEVL 135 (188)
T ss_dssp HHHHTTCCEEEEEECCSH---HHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHcCCEEeeEEEEEEe---HHHhhhhhhccccCCCeEeec
Confidence 344556789999999977 346788899999999999974
No 8
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=43.45 E-value=18 Score=29.18 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=30.4
Q ss_pred hhhhhcCCCCeEEEEeeecccCccCHHHHHHHHhhcCCCeEEEc
Q 046005 3 LKALRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIK 46 (169)
Q Consensus 3 L~iL~~k~~RTV~RlTLVKg~Nm~~~~~YA~Li~~g~PdFIEvK 46 (169)
+...++.+--|+.|+-|+-+- ..+.=.++++..+||+||+=
T Consensus 94 i~~Ak~~gL~tIqR~FliDS~---al~~~~~~i~~~~PD~iEiL 134 (192)
T 3kts_A 94 IMKAKQHKMLAIQRLFMIDSS---AYNKGVALIQKVQPDCIELL 134 (192)
T ss_dssp HHHHHHTTCEEEEEEECCSHH---HHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHCCCeEEEEEEEEEcc---hHHHHHHHHhhcCCCEEEEC
Confidence 344556667889998888644 34556788999999999974
No 9
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Probab=41.78 E-value=5.5 Score=33.23 Aligned_cols=30 Identities=30% Similarity=0.731 Sum_probs=24.5
Q ss_pred eEEEEeeecccCccCHHHHHHHHhhcCCCeEEEc
Q 046005 13 TVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIK 46 (169)
Q Consensus 13 TV~RlTLVKg~Nm~~~~~YA~Li~~g~PdFIEvK 46 (169)
..+||..||||-.+ |.+---..=||.|||.
T Consensus 181 c~iRISFvKGWG~~----Y~Rq~It~tPCWiEI~ 210 (234)
T 1ygs_A 181 CILRMSFVKGWGPD----YPRQSIKETPCWIEIH 210 (234)
T ss_dssp TEEEEESSCCCSTT----SSCSSGGGSSSEEEEE
T ss_pred eEEEEEEEcCCCCC----CCCCCCCCCCeEEEEE
Confidence 68999999999843 6565567889999985
No 10
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=40.46 E-value=6.2 Score=33.67 Aligned_cols=30 Identities=30% Similarity=0.698 Sum_probs=24.6
Q ss_pred eEEEEeeecccCccCHHHHHHHHhhcCCCeEEEc
Q 046005 13 TVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIK 46 (169)
Q Consensus 13 TV~RlTLVKg~Nm~~~~~YA~Li~~g~PdFIEvK 46 (169)
..+||..||||-. .|.+---..=||.|||.
T Consensus 215 C~iRISFVKGWG~----~Y~Rq~ItstPCWIEI~ 244 (268)
T 1dd1_A 215 CILRMSFVKGWGP----DYPRQSIKETPCWIEIH 244 (268)
T ss_dssp GEEEEEESCCCST----TSSCCSGGGSSSEEEEE
T ss_pred eeEEEEEEcCCCC----CCCCCCCCcCCeEEEEE
Confidence 6899999999985 36565567889999985
No 11
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster}
Probab=40.34 E-value=6.2 Score=33.24 Aligned_cols=30 Identities=30% Similarity=0.678 Sum_probs=22.6
Q ss_pred eEEEEeeecccCccCHHHHHHHHhhcCCCeEEEc
Q 046005 13 TVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIK 46 (169)
Q Consensus 13 TV~RlTLVKg~Nm~~~~~YA~Li~~g~PdFIEvK 46 (169)
..+||..||||.- .|.+---..=||.|||.
T Consensus 190 CtiRiSFvKGWG~----~Y~Rq~ItstPCWiEI~ 219 (245)
T 3gmj_D 190 CTIRMSFVKGWGA----EYHRQDVTSTPCWIEIH 219 (245)
T ss_dssp GEEEEEESSCCST----TSSCCSGGGSSSEEEEE
T ss_pred ceeeeEeecCcCc----ccccCCcccCCEEEEEE
Confidence 4789999999873 46555557788898886
No 12
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A
Probab=38.34 E-value=6.1 Score=32.88 Aligned_cols=31 Identities=29% Similarity=0.688 Sum_probs=24.3
Q ss_pred CeEEEEeeecccCccCHHHHHHHHhhcCCCeEEEc
Q 046005 12 RTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIK 46 (169)
Q Consensus 12 RTV~RlTLVKg~Nm~~~~~YA~Li~~g~PdFIEvK 46 (169)
...+||..||||-.+ |.+---..=|+.|||.
T Consensus 171 ~C~iRISFvKGWG~~----Y~Rq~It~tPCWiEI~ 201 (227)
T 1khx_A 171 MCTIRMSFVKGWGAE----YRRQTVTSTPCWIELH 201 (227)
T ss_dssp GGEEEEEESCCCSSS----SSCCSGGGSSSEEEEE
T ss_pred ceEEEEEEEcCCCCC----CCCCCCCcCCeEEEEE
Confidence 468999999999853 5555557789999985
No 13
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=31.46 E-value=34 Score=29.61 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=26.2
Q ss_pred hhhhhhcCCCCeEEEEeeecccCccC--HHHHHHHHhhc
Q 046005 2 SLKALRDKQQRTVYRLTLVKGWNTED--IEAYSKLFSIG 38 (169)
Q Consensus 2 sL~iL~~k~~RTV~RlTLVKg~Nm~~--~~~YA~Li~~g 38 (169)
+|+.|++.+-...+..+|++|+|.+. +...++++...
T Consensus 244 ai~~L~~aGi~v~i~~vll~GvNd~~e~l~~l~~~l~~l 282 (416)
T 2a5h_A 244 ACQLLADAGVPLGNQSVLLRGVNDCVHVMKELVNKLVKI 282 (416)
T ss_dssp HHHHHHHTTCCEEEEEECCTTTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCEEEEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 46677777777789999999999643 55555555443
No 14
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=25.58 E-value=16 Score=27.30 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=6.6
Q ss_pred eehhhHHHHHhCCCCCCccccccCCCCccccCC
Q 046005 115 IDYEKFHDLVASGRPFSSKDYMAASPHWAVYGA 147 (169)
Q Consensus 115 Idy~kF~~l~~~~~~f~~~dY~~~TP~WA~~g~ 147 (169)
+||+.|..++..+..=...-...++|+|+.-|.
T Consensus 175 ~d~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (211)
T 2ggz_A 175 FDFSNVLRVICNGKQPDMETDSSKSPDKAGLGK 207 (211)
T ss_dssp SCTTHHHHHHHHHC-------------------
T ss_pred CCHHHHHHHHhcCCCCchhhcCCCCCccccccc
Confidence 345555555544333233344556667776653
No 15
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=22.81 E-value=1.1e+02 Score=26.93 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=46.6
Q ss_pred eecccCcc--CHHHHHHHHhhcCCCeEEEcceeecccC----CCCCCCCCCCCCh-HHHHHHHHHHHHh
Q 046005 19 LVKGWNTE--DIEAYSKLFSIGNPDFVEIKGVTYCGSS----ATSKLTMENVPWH-ADVKAFSEALALR 80 (169)
Q Consensus 19 LVKg~Nm~--~~~~YA~Li~~g~PdFIEvKgyt~~G~S----~~~rLtm~NmP~h-eEV~~Fa~~L~~~ 80 (169)
+.+.||-+ |++.+|+|++.+...||=+=+=-|-|.+ +.+.-+..|+|++ +=|.+|+++.-+.
T Consensus 69 ~~~~F~p~~fDp~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~~~~krDlv~el~~A~rk~ 137 (450)
T 2wvv_A 69 LMDQWNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDE 137 (450)
T ss_dssp GGGGCCCTTCCHHHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHT
T ss_pred HHhhCCcccCCHHHHHHHHHHcCCcEEEEEEeecCCccccCCCCCCCccccCCCCCChHHHHHHHHHHc
Confidence 46678865 8999999999999999987776677763 3345667778876 5566777776654
No 16
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=20.35 E-value=71 Score=23.95 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=25.7
Q ss_pred EeeecccCccCHHHHHHHHhhcCCCeEEE
Q 046005 17 LTLVKGWNTEDIEAYSKLFSIGNPDFVEI 45 (169)
Q Consensus 17 lTLVKg~Nm~~~~~YA~Li~~g~PdFIEv 45 (169)
+-.|++.+.++...+++.+..+..++||+
T Consensus 13 i~~~~~~~~~~~~~~~~~~~~~G~~~iev 41 (205)
T 1wa3_A 13 VAVLRANSVEEAKEKALAVFEGGVHLIEI 41 (205)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEecCCHHHHHHHHHHHHHCCCCEEEE
Confidence 45678888889999999999999999987
Done!