Query 046005
Match_columns 169
No_of_seqs 177 out of 246
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 13:22:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046005.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046005hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vkfa_ c.1.29.1 (A:) Glycerol 68.6 2 0.00014 32.7 3.6 38 6-46 86-123 (172)
2 d1t35a_ c.129.1.1 (A:) Hypothe 56.3 4 0.00029 29.8 3.3 36 46-89 2-38 (179)
3 d1mjsa_ b.26.1.1 (A:) Smad3 MH 53.8 2.8 0.00021 32.1 2.0 29 13-45 142-170 (190)
4 d1e43a1 b.71.1.1 (A:394-483) B 49.5 4 0.00029 28.0 2.0 30 89-118 24-60 (90)
5 d2q4oa1 c.129.1.1 (A:8-190) Hy 47.9 3.9 0.00029 30.1 2.0 37 45-89 6-43 (183)
6 d1ud2a1 b.71.1.1 (A:391-480) B 40.3 6.7 0.00049 26.8 2.0 30 89-118 24-60 (90)
7 d2d3na1 b.71.1.1 (A:399-485) B 39.2 7.2 0.00052 26.5 2.0 29 89-117 21-56 (87)
8 d1ydhb_ c.129.1.1 (B:) Hypothe 35.2 14 0.00098 26.9 3.2 36 46-89 3-39 (181)
9 d1ct5a_ c.1.6.2 (A:) "Hypothet 34.2 14 0.00099 28.7 3.3 71 22-92 151-232 (244)
10 d1nu0a_ c.55.3.8 (A:) Hypothet 25.6 87 0.0063 21.4 6.2 76 11-94 24-100 (138)
11 d1w85a_ c.36.1.11 (A:) Pyruvat 25.3 14 0.001 30.0 1.9 36 20-55 230-270 (365)
12 d1ygsa_ b.26.1.1 (A:) Smad4 tu 23.7 7.3 0.00053 30.4 -0.2 28 15-46 183-210 (225)
13 d1umda_ c.36.1.11 (A:) Branche 22.6 19 0.0014 29.0 2.3 23 34-56 248-271 (362)
14 d1j5ua_ d.208.1.1 (A:) Hypothe 20.2 8 0.00058 27.1 -0.6 12 43-54 100-111 (127)
No 1
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Probab=68.64 E-value=2 Score=32.66 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=28.8
Q ss_pred hhcCCCCeEEEEeeecccCccCHHHHHHHHhhcCCCeEEEc
Q 046005 6 LRDKQQRTVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIK 46 (169)
Q Consensus 6 L~~k~~RTV~RlTLVKg~Nm~~~~~YA~Li~~g~PdFIEvK 46 (169)
-++.+=-|+.|+.|+-..- .+.=.++++..+||+|||=
T Consensus 86 Ak~~Gl~tIqR~FliDS~a---l~~~~~~i~~~~PD~IEiL 123 (172)
T d1vkfa_ 86 AKKNGIPAVLRFFALDSKA---VERGIEQIETLGVDVVEVL 123 (172)
T ss_dssp HHHTTCCEEEEEECCSHHH---HHHHHHHHHHHTCSEEEEE
T ss_pred HHHcCCeEEEEEEeeehHH---HHHHHHHHhhcCCCEEEEC
Confidence 3445667999999996553 4445578889999999984
No 2
>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}
Probab=56.30 E-value=4 Score=29.83 Aligned_cols=36 Identities=14% Similarity=0.244 Sum_probs=25.1
Q ss_pred ccee-ecccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCceEee
Q 046005 46 KGVT-YCGSSATSKLTMENVPWHADVKAFSEALALRSEGEYEVAC 89 (169)
Q Consensus 46 Kgyt-~~G~S~~~rLtm~NmP~heEV~~Fa~~L~~~~~~~Y~i~~ 89 (169)
|.++ |||+|.+ .+-|++++..++++.|++. +|.|+.
T Consensus 2 k~v~VF~~s~~~-----~~~~~~~~a~~lg~~la~~---g~~lv~ 38 (179)
T d1t35a_ 2 KTICVFAGSNPG-----GNEAYKRKAAELGVYMAEQ---GIGLVY 38 (179)
T ss_dssp CEEEEECCSSCC-----SSTHHHHHHHHHHHHHHHT---TCEEEE
T ss_pred CEEEEEccCCCC-----cCCHHHHHHHHHHHHHHHC---CCeEEE
Confidence 5454 7876542 3667889999999999986 455443
No 3
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.81 E-value=2.8 Score=32.06 Aligned_cols=29 Identities=28% Similarity=0.700 Sum_probs=19.8
Q ss_pred eEEEEeeecccCccCHHHHHHHHhhcCCCeEEE
Q 046005 13 TVYRLTLVKGWNTEDIEAYSKLFSIGNPDFVEI 45 (169)
Q Consensus 13 TV~RlTLVKg~Nm~~~~~YA~Li~~g~PdFIEv 45 (169)
.-+||..||||. ..|-+.--..=|+.|||
T Consensus 142 c~iRISFvKGWG----~~Y~Rq~ItstPCWiEi 170 (190)
T d1mjsa_ 142 CTIRMSFVKGWG----AEYRRQTVTSTPCWIEL 170 (190)
T ss_dssp GEEEEEESCCC-----------CCTTSSSEEEE
T ss_pred eEEEEEEEcccC----CCccCCCCCcCCEEEEE
Confidence 469999999998 45877777889999998
No 4
>d1e43a1 b.71.1.1 (A:394-483) Bacterial alpha-Amylase {Bacillus licheniformis [TaxId: 1402]}
Probab=49.50 E-value=4 Score=27.96 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=17.9
Q ss_pred ecCccc-eEEEeeecc----ccccCCee--EEeeehh
Q 046005 89 CEHVHS-CCVLLAKTE----RFKVNGQW--FTWIDYE 118 (169)
Q Consensus 89 ~Eh~~S-r~vLLa~~~----kf~i~g~w--~TwIdy~ 118 (169)
.+|++| |+|||++.. +-.|+..+ .+|+|+-
T Consensus 24 ~~~~~sGlavviSng~~g~K~M~VG~~~ag~~~~D~~ 60 (90)
T d1e43a1 24 SSVANSGLAALITDGPGGAKRMYVGRQNAGETWHDIT 60 (90)
T ss_dssp TTSTTCCEEEEEESSSCEEEEEECCGGGTTCEEEETT
T ss_pred ccCCCCCEEEEEeCCCcccEEEEeCcccCCCEEEecc
Confidence 578888 666666632 22355444 4788763
No 5
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=47.87 E-value=3.9 Score=30.10 Aligned_cols=37 Identities=16% Similarity=0.452 Sum_probs=25.1
Q ss_pred Eccee-ecccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCceEee
Q 046005 45 IKGVT-YCGSSATSKLTMENVPWHADVKAFSEALALRSEGEYEVAC 89 (169)
Q Consensus 45 vKgyt-~~G~S~~~rLtm~NmP~heEV~~Fa~~L~~~~~~~Y~i~~ 89 (169)
+|.++ |||+|.. .+-|++++..++++.|++. +|.|+.
T Consensus 6 ~k~v~Vf~gs~~~-----~~~~~~~~a~~lg~~la~~---g~~lV~ 43 (183)
T d2q4oa1 6 FRRICVFCGSSQG-----KKSSYQDAAVDLGNELVSR---NIDLVY 43 (183)
T ss_dssp CSEEEEECCSSCC-----SSHHHHHHHHHHHHHHHHT---TCEEEE
T ss_pred CceEEEECcCCCC-----cCCHHHHHHHHHHHHHHHc---CCeEEE
Confidence 45555 7775432 3567888899999999987 454443
No 6
>d1ud2a1 b.71.1.1 (A:391-480) Bacterial alpha-Amylase {Bacillus sp., ksm-k38 [TaxId: 1409]}
Probab=40.29 E-value=6.7 Score=26.77 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=17.6
Q ss_pred ecCccc-eEEEeeecc----ccccCCee--EEeeehh
Q 046005 89 CEHVHS-CCVLLAKTE----RFKVNGQW--FTWIDYE 118 (169)
Q Consensus 89 ~Eh~~S-r~vLLa~~~----kf~i~g~w--~TwIdy~ 118 (169)
.+|++| |+|||++.. +..|+..+ .+|+|+=
T Consensus 24 ~~~p~sGlAvv~Sng~~g~K~M~VG~~~Ag~~w~D~l 60 (90)
T d1ud2a1 24 SSRPNSGLATIMSNGPGGSKWMYVGRQNAGQTWTDLT 60 (90)
T ss_dssp TTSTTCCEEEEEESSSCEEEEEECCGGGTTCEEEETT
T ss_pred cCCCCCCEEEEEeCCCCceEEEEeCcccCCCEEEEcc
Confidence 577878 666666632 23455444 4787763
No 7
>d2d3na1 b.71.1.1 (A:399-485) Bacterial alpha-Amylase {Bacillus sp. 707 [TaxId: 1416]}
Probab=39.24 E-value=7.2 Score=26.46 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=17.3
Q ss_pred ecCccc-eEEEeeecc----ccccCCee--EEeeeh
Q 046005 89 CEHVHS-CCVLLAKTE----RFKVNGQW--FTWIDY 117 (169)
Q Consensus 89 ~Eh~~S-r~vLLa~~~----kf~i~g~w--~TwIdy 117 (169)
++|+.| |+|||++.. +..|+..+ .+|+|+
T Consensus 21 ~~hp~sGlAvv~Sng~~g~K~M~VG~~~Ag~~w~D~ 56 (87)
T d2d3na1 21 TAHPNSGLATIMSDGAGGSKWMFVGRNKAGQVWSDI 56 (87)
T ss_dssp TTSTTCCEEEEEESSSCEEEEEECCGGGTTCEEEET
T ss_pred ccCCCCCEEEEEeCCCCceEEEEeCcccCCCEEEEc
Confidence 577777 666666632 22455444 577776
No 8
>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=35.16 E-value=14 Score=26.94 Aligned_cols=36 Identities=14% Similarity=0.388 Sum_probs=24.3
Q ss_pred ccee-ecccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCceEee
Q 046005 46 KGVT-YCGSSATSKLTMENVPWHADVKAFSEALALRSEGEYEVAC 89 (169)
Q Consensus 46 Kgyt-~~G~S~~~rLtm~NmP~heEV~~Fa~~L~~~~~~~Y~i~~ 89 (169)
|.++ |||+|.. .+=|+.++..++++.|++. +|.++.
T Consensus 3 k~v~Vf~gs~~~-----~~~~~~~~a~~lg~~La~~---g~~lv~ 39 (181)
T d1ydhb_ 3 RKICVFCGSHSG-----HREVFSDAAIELGNELVKR---KIDLVY 39 (181)
T ss_dssp SEEEEECCSCCC-----SSTHHHHHHHHHHHHHHHT---TCEEEE
T ss_pred cEEEEEccCCCC-----cCCHHHHHHHHHHHHHHHC---CCeEEE
Confidence 4444 7875532 3556678899999999987 465554
No 9
>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=34.24 E-value=14 Score=28.69 Aligned_cols=71 Identities=15% Similarity=0.225 Sum_probs=40.1
Q ss_pred ccCcc-CHHHHHHHHhhcCCCeEEEcceeecccCCCCCCCCCCCCChHHHHHHHHHHHHh------c----CCCceEeec
Q 046005 22 GWNTE-DIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLTMENVPWHADVKAFSEALALR------S----EGEYEVACE 90 (169)
Q Consensus 22 g~Nm~-~~~~YA~Li~~g~PdFIEvKgyt~~G~S~~~rLtm~NmP~heEV~~Fa~~L~~~------~----~~~Y~i~~E 90 (169)
|++.+ ++...++.+...+=..|+++|.|-+|.-........--..+.+++++..+|... | +++|++|-+
T Consensus 151 G~~~~~~l~~~~~~~~~~~~~~l~l~GLM~i~p~~~~~~~~~~~~~F~~l~~l~~~l~~~~~~~~~LSMGMS~Dye~AI~ 230 (244)
T d1ct5a_ 151 GLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSLKLSMGMSADFREAIR 230 (244)
T ss_dssp SBCCHHHHHHHHHHHHSTTCCSEEEEEEECCCCCC---------HHHHHHHHHHHHHHHHHCCCCEEECCCTTTHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcccchhccccccccCCCCchhhHHHHHHHHHHHHHHHHhccCCCCCEEeChhhhhHHHHHH
Confidence 44432 344556655444545699999999995321122222223478888888888764 1 247777766
Q ss_pred Cc
Q 046005 91 HV 92 (169)
Q Consensus 91 h~ 92 (169)
+-
T Consensus 231 ~G 232 (244)
T d1ct5a_ 231 QG 232 (244)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 10
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}
Probab=25.61 E-value=87 Score=21.40 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=52.2
Q ss_pred CCeEEEEeeecccCcc-CHHHHHHHHhhcCCCeEEEcceeecccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCceEee
Q 046005 11 QRTVYRLTLVKGWNTE-DIEAYSKLFSIGNPDFVEIKGVTYCGSSATSKLTMENVPWHADVKAFSEALALRSEGEYEVAC 89 (169)
Q Consensus 11 ~RTV~RlTLVKg~Nm~-~~~~YA~Li~~g~PdFIEvKgyt~~G~S~~~rLtm~NmP~heEV~~Fa~~L~~~~~~~Y~i~~ 89 (169)
+....-+..++--|.. .+....++++..+|+-| -+|... .+.-..=++.+.|++|++.|.+.+.-...+.+
T Consensus 24 ~~~a~pl~~i~~~~~~~~~~~l~~i~~e~~~~~i------VvG~P~--~~~g~~~~~~~~v~~f~~~L~~~~~i~V~~~D 95 (138)
T d1nu0a_ 24 TGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEI------IVGLPL--NMDGTEQPLTARARKFANRIHGRFGVEVKLHD 95 (138)
T ss_dssp TTEEEEEEEEEEETTEECHHHHHHHHHHHCCSEE------EEEEEE--CTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCccccceeeecccchhhHHHHHHHhhccCccEE------Eeeccc--ccccchHHHHHHHHHHHHHHhhccCCCeEEEe
Confidence 4555666666555553 68899999999999876 456542 23333446789999999999987533566667
Q ss_pred cCccc
Q 046005 90 EHVHS 94 (169)
Q Consensus 90 Eh~~S 94 (169)
|+--|
T Consensus 96 Er~TS 100 (138)
T d1nu0a_ 96 ERLST 100 (138)
T ss_dssp EECCC
T ss_pred ccccH
Confidence 76554
No 11
>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}
Probab=25.31 E-value=14 Score=29.95 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=23.7
Q ss_pred ecccCccCH-HHHHHHH---hh-cCCCeEEEcceeecccCC
Q 046005 20 VKGWNTEDI-EAYSKLF---SI-GNPDFVEIKGVTYCGSSA 55 (169)
Q Consensus 20 VKg~Nm~~~-~~YA~Li---~~-g~PdFIEvKgyt~~G~S~ 55 (169)
|.|.|..++ +...+.+ .. ..|.|||++-|-+.|+|.
T Consensus 230 vDG~D~~~v~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~ 270 (365)
T d1w85a_ 230 VDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGPHTM 270 (365)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCSSCSCS
T ss_pred EecchhHHHHHHHHHHHHHhhcCCccEEEEeecccccccCC
Confidence 556665432 3333333 33 369999999999999985
No 12
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.69 E-value=7.3 Score=30.43 Aligned_cols=28 Identities=32% Similarity=0.710 Sum_probs=21.7
Q ss_pred EEEeeecccCccCHHHHHHHHhhcCCCeEEEc
Q 046005 15 YRLTLVKGWNTEDIEAYSKLFSIGNPDFVEIK 46 (169)
Q Consensus 15 ~RlTLVKg~Nm~~~~~YA~Li~~g~PdFIEvK 46 (169)
+||..||||= ..|-+---..=|+.|||-
T Consensus 183 iRiSFvKGWG----~~Y~Rq~ItstPCWiEi~ 210 (225)
T d1ygsa_ 183 LRMSFVKGWG----PDYPRQSIKETPCWIEIH 210 (225)
T ss_dssp EEEESSCCCS----TTSSCSSGGGSSSEEEEE
T ss_pred EEEEEEcccC----CCCcCCCcCcCCeEEEEE
Confidence 8999999997 345454557789999984
No 13
>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}
Probab=22.65 E-value=19 Score=28.98 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=18.3
Q ss_pred HHhhc-CCCeEEEcceeecccCCC
Q 046005 34 LFSIG-NPDFVEIKGVTYCGSSAT 56 (169)
Q Consensus 34 Li~~g-~PdFIEvKgyt~~G~S~~ 56 (169)
-+..+ .|-|||++-|-+.|+|.+
T Consensus 248 ~~R~g~gP~lIE~~tyR~~gHs~~ 271 (362)
T d1umda_ 248 RARRGEGPSLVELRVYRYGPHSSA 271 (362)
T ss_dssp HHHTTCCCEEEEEECCCCSCSSTT
T ss_pred HHHhcCCCEEEEcccccccCCCcc
Confidence 34444 599999999999999863
No 14
>d1j5ua_ d.208.1.1 (A:) Hypothetical protein TM1083 {Thermotoga maritima [TaxId: 2336]}
Probab=20.20 E-value=8 Score=27.11 Aligned_cols=12 Identities=42% Similarity=0.437 Sum_probs=9.9
Q ss_pred EEEcceeecccC
Q 046005 43 VEIKGVTYCGSS 54 (169)
Q Consensus 43 IEvKgyt~~G~S 54 (169)
+||||+||-+-+
T Consensus 100 ~EVKAvTyh~l~ 111 (127)
T d1j5ua_ 100 TEIKALTYHLLK 111 (127)
T ss_dssp CCCCEECSTTCC
T ss_pred ceEEEEEeeeEE
Confidence 699999998743
Done!