Query 046006
Match_columns 180
No_of_seqs 228 out of 1200
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.1E-42 1.3E-46 293.7 15.9 179 1-180 187-443 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 2.8E-37 6.1E-42 237.9 13.3 178 1-180 27-282 (287)
3 PLN03210 Resistant to P. syrin 99.9 2.1E-22 4.6E-27 179.5 13.7 146 1-156 215-407 (1153)
4 TIGR03015 pepcterm_ATPase puta 99.3 4.1E-10 8.8E-15 86.1 14.8 139 1-147 51-242 (269)
5 PRK04841 transcriptional regul 98.9 1.8E-08 3.9E-13 88.9 13.4 142 1-149 40-231 (903)
6 PRK00411 cdc6 cell division co 98.8 2.8E-07 6.2E-12 74.2 13.7 142 1-145 63-257 (394)
7 PF13401 AAA_22: AAA domain; P 98.7 2E-08 4.3E-13 68.4 5.0 85 1-88 12-99 (131)
8 cd01128 rho_factor Transcripti 98.7 6.5E-08 1.4E-12 73.2 7.4 85 1-88 24-115 (249)
9 PF05729 NACHT: NACHT domain 98.6 3.4E-07 7.3E-12 64.5 8.8 114 1-124 8-162 (166)
10 PRK09376 rho transcription ter 98.6 1E-07 2.2E-12 75.8 5.9 82 1-88 177-268 (416)
11 PF01637 Arch_ATPase: Archaeal 98.5 1.5E-06 3.2E-11 64.5 9.3 38 105-142 184-233 (234)
12 COG3903 Predicted ATPase [Gene 98.5 2.4E-07 5.2E-12 73.5 5.1 139 1-149 22-195 (414)
13 TIGR00767 rho transcription te 98.4 1.1E-06 2.4E-11 70.2 8.0 85 1-88 176-267 (415)
14 TIGR02928 orc1/cdc6 family rep 98.4 2E-06 4.4E-11 68.6 9.0 121 1-124 48-211 (365)
15 TIGR00635 ruvB Holliday juncti 98.3 1.6E-05 3.5E-10 61.9 11.9 136 1-146 38-204 (305)
16 PF14516 AAA_35: AAA-like doma 98.2 5.5E-05 1.2E-09 59.8 13.4 143 3-149 41-245 (331)
17 PRK00080 ruvB Holliday junctio 98.2 3E-05 6.6E-10 61.1 11.9 136 1-146 59-225 (328)
18 COG2256 MGS1 ATPase related to 98.2 1.5E-05 3.3E-10 63.3 9.8 96 1-124 56-175 (436)
19 COG2909 MalT ATP-dependent tra 98.2 2.9E-05 6.2E-10 66.8 12.0 145 1-150 45-240 (894)
20 COG1474 CDC6 Cdc6-related prot 98.1 2.2E-05 4.7E-10 62.8 8.9 119 1-124 50-202 (366)
21 PRK13342 recombination factor 97.9 0.00015 3.2E-09 59.1 10.9 39 105-143 144-196 (413)
22 PRK11331 5-methylcytosine-spec 97.9 4.5E-05 9.7E-10 62.1 7.3 82 1-89 202-285 (459)
23 PRK06893 DNA replication initi 97.9 0.0002 4.3E-09 53.7 9.8 52 96-147 145-207 (229)
24 PRK12608 transcription termina 97.8 9.9E-05 2.2E-09 58.8 8.2 84 2-88 142-232 (380)
25 PRK14087 dnaA chromosomal repl 97.8 0.00031 6.7E-09 57.8 11.4 128 2-147 150-323 (450)
26 PRK08727 hypothetical protein; 97.8 0.00022 4.7E-09 53.6 9.2 45 96-140 146-201 (233)
27 PF05621 TniB: Bacterial TniB 97.8 0.00038 8.3E-09 53.8 10.4 83 2-88 70-157 (302)
28 smart00382 AAA ATPases associa 97.8 0.00012 2.7E-09 49.3 6.6 81 1-89 10-91 (148)
29 cd00009 AAA The AAA+ (ATPases 97.7 0.00014 3E-09 49.5 6.8 70 1-88 27-96 (151)
30 COG3267 ExeA Type II secretory 97.7 0.00078 1.7E-08 50.7 10.8 137 2-144 60-246 (269)
31 PF00308 Bac_DnaA: Bacterial d 97.7 0.00036 7.8E-09 51.9 8.8 50 95-144 149-209 (219)
32 PF13173 AAA_14: AAA domain 97.7 6.9E-05 1.5E-09 50.9 4.4 69 1-93 10-78 (128)
33 KOG2028 ATPase related to the 97.7 0.00058 1.3E-08 54.1 10.0 101 1-124 170-293 (554)
34 PRK08118 topology modulation p 97.7 9.7E-05 2.1E-09 52.7 5.3 29 1-29 9-37 (167)
35 PF05496 RuvB_N: Holliday junc 97.7 0.00028 6.1E-09 52.4 7.7 42 106-147 173-225 (233)
36 TIGR00362 DnaA chromosomal rep 97.6 0.0017 3.6E-08 52.8 12.3 118 1-139 144-306 (405)
37 PRK14088 dnaA chromosomal repl 97.6 0.0011 2.5E-08 54.4 10.9 104 1-124 138-275 (440)
38 PRK07261 topology modulation p 97.6 0.00023 5E-09 50.9 5.9 29 1-29 8-36 (171)
39 PRK00149 dnaA chromosomal repl 97.5 0.0015 3.3E-08 53.8 11.0 117 1-138 156-317 (450)
40 PTZ00202 tuzin; Provisional 97.5 0.0028 6E-08 51.9 12.0 109 1-124 294-433 (550)
41 PF04665 Pox_A32: Poxvirus A32 97.5 0.00035 7.6E-09 52.5 6.5 28 2-32 22-49 (241)
42 PRK04195 replication factor C 97.5 0.0048 1E-07 51.4 13.8 36 105-140 153-199 (482)
43 PRK08084 DNA replication initi 97.5 0.002 4.4E-08 48.4 10.5 53 95-147 150-213 (235)
44 PF00004 AAA: ATPase family as 97.5 0.00019 4E-09 48.5 4.4 17 1-17 6-22 (132)
45 TIGR03689 pup_AAA proteasome A 97.5 0.0019 4.2E-08 53.8 10.8 20 105-124 358-377 (512)
46 PRK14949 DNA polymerase III su 97.4 0.0027 5.8E-08 56.0 11.8 36 105-140 171-217 (944)
47 PF13191 AAA_16: AAA ATPase do 97.4 0.00042 9.1E-09 49.6 6.1 18 1-18 32-49 (185)
48 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.0013 2.9E-08 48.8 8.6 43 104-146 151-204 (226)
49 TIGR00678 holB DNA polymerase 97.4 0.002 4.4E-08 46.6 9.3 34 105-138 148-186 (188)
50 PRK08903 DnaA regulatory inact 97.4 0.0012 2.6E-08 49.2 8.1 48 100-147 145-203 (227)
51 PRK14963 DNA polymerase III su 97.4 0.0046 1E-07 51.6 12.2 36 105-140 168-214 (504)
52 PRK08116 hypothetical protein; 97.4 0.00065 1.4E-08 52.2 6.6 67 2-87 123-189 (268)
53 PRK12422 chromosomal replicati 97.4 0.0049 1.1E-07 50.7 12.0 102 1-124 149-283 (445)
54 PTZ00112 origin recognition co 97.4 0.0011 2.4E-08 58.2 8.3 121 1-124 789-948 (1164)
55 PRK13341 recombination factor 97.3 0.00072 1.6E-08 58.7 7.3 32 105-136 161-210 (725)
56 PRK06645 DNA polymerase III su 97.3 0.0049 1.1E-07 51.4 11.9 36 105-140 180-226 (507)
57 PRK12323 DNA polymerase III su 97.3 0.0024 5.2E-08 54.5 10.0 37 105-141 176-223 (700)
58 PRK09112 DNA polymerase III su 97.3 0.0034 7.3E-08 50.1 9.7 77 66-142 126-239 (351)
59 KOG2543 Origin recognition com 97.3 0.00076 1.7E-08 53.6 5.9 86 2-93 39-132 (438)
60 PRK14961 DNA polymerase III su 97.3 0.0066 1.4E-07 48.7 11.5 36 105-140 171-217 (363)
61 PRK05564 DNA polymerase III su 97.2 0.015 3.2E-07 45.6 13.0 131 1-140 34-187 (313)
62 PLN03025 replication factor C 97.2 0.0023 4.9E-08 50.4 8.3 34 105-138 151-195 (319)
63 PRK07003 DNA polymerase III su 97.2 0.0061 1.3E-07 52.9 11.2 39 105-143 171-221 (830)
64 PRK09361 radB DNA repair and r 97.2 0.00099 2.2E-08 49.6 5.9 81 1-87 31-118 (225)
65 PRK05642 DNA replication initi 97.2 0.0075 1.6E-07 45.4 10.6 53 95-147 149-212 (234)
66 KOG0735 AAA+-type ATPase [Post 97.2 0.0062 1.3E-07 52.2 10.8 31 2-34 440-470 (952)
67 PRK14960 DNA polymerase III su 97.2 0.0043 9.3E-08 53.1 9.9 36 105-140 170-216 (702)
68 PRK14086 dnaA chromosomal repl 97.2 0.0076 1.6E-07 51.2 11.2 29 96-124 430-458 (617)
69 TIGR01242 26Sp45 26S proteasom 97.2 0.0037 8.1E-08 50.1 9.1 34 104-137 285-328 (364)
70 PRK07940 DNA polymerase III su 97.1 0.0072 1.6E-07 49.0 10.6 36 105-140 169-210 (394)
71 PRK09087 hypothetical protein; 97.1 0.0076 1.7E-07 45.1 9.9 52 96-147 137-199 (226)
72 cd01393 recA_like RecA is a b 97.1 0.0039 8.5E-08 46.3 8.3 85 1-88 27-126 (226)
73 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0019 4.2E-08 48.2 6.4 85 1-87 27-126 (235)
74 TIGR02237 recomb_radB DNA repa 97.1 0.0031 6.6E-08 46.4 7.3 82 1-87 20-108 (209)
75 PRK12377 putative replication 97.1 0.0021 4.6E-08 48.7 6.5 66 2-88 110-175 (248)
76 PRK14957 DNA polymerase III su 97.0 0.013 2.9E-07 49.4 11.3 39 105-143 171-221 (546)
77 PRK14956 DNA polymerase III su 97.0 0.0043 9.4E-08 51.2 8.2 35 105-139 173-218 (484)
78 cd01133 F1-ATPase_beta F1 ATP 97.0 0.0024 5.1E-08 49.0 6.2 84 2-88 78-175 (274)
79 PRK03992 proteasome-activating 97.0 0.0085 1.8E-07 48.5 9.7 32 105-136 295-336 (389)
80 cd01394 radB RadB. The archaea 96.9 0.0041 8.8E-08 46.0 7.0 82 1-88 27-115 (218)
81 COG1222 RPT1 ATP-dependent 26S 96.9 0.0038 8.3E-08 49.3 6.9 63 1-88 193-256 (406)
82 PRK07994 DNA polymerase III su 96.9 0.012 2.6E-07 50.5 10.3 36 105-140 171-217 (647)
83 PRK14962 DNA polymerase III su 96.9 0.01 2.2E-07 49.2 9.5 43 105-147 169-223 (472)
84 COG3899 Predicted ATPase [Gene 96.9 0.022 4.7E-07 50.7 12.0 45 105-149 212-266 (849)
85 PRK14964 DNA polymerase III su 96.9 0.018 3.9E-07 47.9 10.7 36 105-140 168-214 (491)
86 cd03115 SRP The signal recogni 96.9 0.0034 7.4E-08 44.7 5.8 85 1-88 8-94 (173)
87 PRK07952 DNA replication prote 96.9 0.0037 8.1E-08 47.3 6.2 68 2-89 108-175 (244)
88 PRK08691 DNA polymerase III su 96.8 0.012 2.6E-07 50.7 9.7 37 105-141 171-218 (709)
89 cd01120 RecA-like_NTPases RecA 96.8 0.013 2.8E-07 40.6 8.5 33 1-36 7-39 (165)
90 PRK14969 DNA polymerase III su 96.8 0.017 3.7E-07 48.6 10.3 34 105-138 171-215 (527)
91 COG1484 DnaC DNA replication p 96.8 0.0041 8.9E-08 47.4 5.9 66 2-88 114-179 (254)
92 PRK07471 DNA polymerase III su 96.8 0.016 3.5E-07 46.5 9.5 78 66-143 126-238 (365)
93 PRK14951 DNA polymerase III su 96.7 0.019 4.1E-07 49.1 10.2 38 105-142 176-224 (618)
94 PTZ00454 26S protease regulato 96.7 0.023 4.9E-07 46.2 10.2 33 105-137 309-351 (398)
95 KOG2227 Pre-initiation complex 96.7 0.034 7.4E-07 45.6 11.0 119 2-124 184-337 (529)
96 PRK05541 adenylylsulfate kinas 96.7 0.0029 6.2E-08 45.3 4.4 27 1-30 15-41 (176)
97 COG1066 Sms Predicted ATP-depe 96.7 0.005 1.1E-07 49.5 5.9 76 2-88 102-180 (456)
98 TIGR01241 FtsH_fam ATP-depende 96.7 0.023 5E-07 47.5 10.1 38 105-142 218-266 (495)
99 PRK07764 DNA polymerase III su 96.7 0.033 7.2E-07 49.3 11.4 36 105-140 172-218 (824)
100 PRK04296 thymidine kinase; Pro 96.6 0.0021 4.5E-08 46.8 3.4 79 2-87 11-89 (190)
101 cd00983 recA RecA is a bacter 96.6 0.0046 1E-07 48.7 5.5 80 1-88 63-145 (325)
102 TIGR02012 tigrfam_recA protein 96.6 0.0051 1.1E-07 48.4 5.8 80 1-88 63-145 (321)
103 TIGR00959 ffh signal recogniti 96.6 0.009 2E-07 48.9 7.2 17 1-17 107-123 (428)
104 PRK09354 recA recombinase A; P 96.6 0.0064 1.4E-07 48.3 6.0 80 1-88 68-150 (349)
105 TIGR02397 dnaX_nterm DNA polym 96.6 0.059 1.3E-06 42.8 11.6 40 105-144 169-219 (355)
106 PRK14958 DNA polymerase III su 96.5 0.037 8E-07 46.4 10.4 37 105-141 171-218 (509)
107 PRK06526 transposase; Provisio 96.5 0.006 1.3E-07 46.5 5.3 17 1-17 106-122 (254)
108 PRK08939 primosomal protein Dn 96.5 0.0095 2.1E-07 46.7 6.4 65 2-88 165-229 (306)
109 PRK05896 DNA polymerase III su 96.5 0.036 7.8E-07 47.2 10.2 41 105-145 171-223 (605)
110 PF13481 AAA_25: AAA domain; P 96.5 0.0089 1.9E-07 43.2 5.9 86 1-88 40-153 (193)
111 COG4608 AppF ABC-type oligopep 96.5 0.02 4.4E-07 43.6 7.9 85 2-90 48-141 (268)
112 PF13207 AAA_17: AAA domain; P 96.5 0.0015 3.3E-08 43.5 1.7 17 1-17 7-23 (121)
113 CHL00176 ftsH cell division pr 96.5 0.065 1.4E-06 46.2 11.7 31 105-135 346-386 (638)
114 PF00448 SRP54: SRP54-type pro 96.5 0.0074 1.6E-07 44.2 5.3 83 1-86 9-93 (196)
115 PF01695 IstB_IS21: IstB-like 96.5 0.0047 1E-07 44.5 4.2 66 1-88 55-120 (178)
116 PF08423 Rad51: Rad51; InterP 96.5 0.0089 1.9E-07 45.6 5.9 86 1-88 46-145 (256)
117 KOG0733 Nuclear AAA ATPase (VC 96.4 0.0082 1.8E-07 50.7 6.0 64 1-88 231-294 (802)
118 PRK00771 signal recognition pa 96.4 0.015 3.3E-07 47.7 7.4 82 1-86 103-185 (437)
119 PTZ00361 26 proteosome regulat 96.4 0.0088 1.9E-07 49.1 5.8 34 104-137 346-389 (438)
120 KOG0741 AAA+-type ATPase [Post 96.4 0.035 7.6E-07 46.3 9.1 66 1-93 546-615 (744)
121 TIGR03877 thermo_KaiC_1 KaiC d 96.4 0.014 3.1E-07 43.8 6.6 81 1-87 29-137 (237)
122 cd01121 Sms Sms (bacterial rad 96.4 0.012 2.7E-07 47.3 6.4 77 2-88 91-170 (372)
123 PRK08181 transposase; Validate 96.3 0.014 3.1E-07 44.8 6.5 66 1-88 114-179 (269)
124 TIGR02881 spore_V_K stage V sp 96.3 0.0036 7.9E-08 47.8 3.3 20 105-124 171-190 (261)
125 PRK14959 DNA polymerase III su 96.3 0.047 1E-06 46.7 10.0 43 105-147 171-225 (624)
126 PRK10867 signal recognition pa 96.3 0.016 3.5E-07 47.5 7.1 17 1-17 108-124 (433)
127 PLN03186 DNA repair protein RA 96.3 0.038 8.3E-07 44.0 8.8 87 1-88 131-230 (342)
128 TIGR01243 CDC48 AAA family ATP 96.3 0.045 9.8E-07 48.0 10.0 34 104-137 614-657 (733)
129 PRK14955 DNA polymerase III su 96.3 0.026 5.6E-07 45.9 8.0 37 105-141 179-226 (397)
130 PRK06067 flagellar accessory p 96.3 0.025 5.5E-07 42.3 7.4 80 1-86 33-130 (234)
131 COG0468 RecA RecA/RadA recombi 96.3 0.027 5.8E-07 43.5 7.5 82 1-88 68-153 (279)
132 TIGR02238 recomb_DMC1 meiotic 96.2 0.036 7.8E-07 43.6 8.4 87 1-88 104-203 (313)
133 PLN03187 meiotic recombination 96.2 0.036 7.8E-07 44.1 8.4 87 1-88 134-233 (344)
134 PF00006 ATP-synt_ab: ATP synt 96.2 0.0061 1.3E-07 45.3 3.8 81 2-87 24-116 (215)
135 PLN00020 ribulose bisphosphate 96.2 0.0045 9.7E-08 49.5 3.2 17 1-17 156-172 (413)
136 PRK04132 replication factor C 96.2 0.12 2.6E-06 45.9 12.1 120 1-140 574-728 (846)
137 PRK12402 replication factor C 96.2 0.17 3.6E-06 39.8 12.1 37 105-141 177-224 (337)
138 TIGR02236 recomb_radA DNA repa 96.2 0.029 6.4E-07 43.9 7.7 86 1-88 103-204 (310)
139 PRK09183 transposase/IS protei 96.2 0.018 3.9E-07 44.0 6.3 17 1-17 110-126 (259)
140 PRK09111 DNA polymerase III su 96.1 0.13 2.8E-06 44.0 11.8 38 105-142 184-232 (598)
141 PRK04301 radA DNA repair and r 96.1 0.039 8.5E-07 43.4 8.2 86 1-88 110-210 (317)
142 PRK14970 DNA polymerase III su 96.1 0.16 3.4E-06 40.7 11.8 36 105-140 160-206 (367)
143 TIGR03499 FlhF flagellar biosy 96.1 0.033 7.1E-07 43.1 7.6 79 1-85 202-281 (282)
144 TIGR02903 spore_lon_C ATP-depe 96.1 0.18 4E-06 43.3 12.6 82 64-145 280-397 (615)
145 PRK08972 fliI flagellum-specif 96.1 0.015 3.1E-07 47.7 5.7 82 2-88 171-264 (444)
146 PRK14950 DNA polymerase III su 96.1 0.029 6.3E-07 47.9 7.7 40 105-144 172-222 (585)
147 TIGR03345 VI_ClpV1 type VI sec 96.1 0.059 1.3E-06 48.0 9.8 20 105-124 343-362 (852)
148 PRK06921 hypothetical protein; 96.1 0.022 4.8E-07 43.7 6.2 29 2-32 126-154 (266)
149 CHL00181 cbbX CbbX; Provisiona 96.0 0.028 6.1E-07 43.6 6.8 20 105-124 189-208 (287)
150 KOG1969 DNA replication checkp 96.0 0.022 4.8E-07 49.1 6.5 64 1-88 334-399 (877)
151 PRK12597 F0F1 ATP synthase sub 96.0 0.014 3.1E-07 48.1 5.3 84 2-87 152-248 (461)
152 PRK04328 hypothetical protein; 96.0 0.018 4E-07 43.6 5.7 81 1-87 31-139 (249)
153 TIGR02880 cbbX_cfxQ probable R 96.0 0.028 6.1E-07 43.5 6.5 20 105-124 188-207 (284)
154 PRK14952 DNA polymerase III su 95.9 0.16 3.4E-06 43.4 11.3 41 105-145 170-222 (584)
155 PF13238 AAA_18: AAA domain; P 95.9 0.0042 9.1E-08 41.5 1.7 17 1-17 6-22 (129)
156 PRK06620 hypothetical protein; 95.9 0.14 3.1E-06 37.9 9.9 43 98-140 133-186 (214)
157 PRK05707 DNA polymerase III su 95.9 0.21 4.6E-06 39.6 11.3 37 105-141 158-201 (328)
158 PRK14974 cell division protein 95.9 0.04 8.6E-07 43.7 7.2 85 1-88 148-234 (336)
159 cd01124 KaiC KaiC is a circadi 95.9 0.034 7.4E-07 39.8 6.4 39 1-44 7-45 (187)
160 cd01135 V_A-ATPase_B V/A-type 95.9 0.022 4.7E-07 43.8 5.5 87 2-88 78-178 (276)
161 PRK14954 DNA polymerase III su 95.9 0.13 2.8E-06 44.3 10.6 34 105-138 179-223 (620)
162 PRK08149 ATP synthase SpaL; Va 95.9 0.036 7.7E-07 45.4 7.0 82 2-88 160-253 (428)
163 PRK14971 DNA polymerase III su 95.9 0.19 4E-06 43.3 11.6 36 105-140 173-219 (614)
164 PRK00440 rfc replication facto 95.9 0.28 6E-06 38.2 11.8 36 105-140 154-200 (319)
165 PRK14722 flhF flagellar biosyn 95.9 0.036 7.8E-07 44.6 6.8 82 1-88 145-227 (374)
166 cd01132 F1_ATPase_alpha F1 ATP 95.8 0.049 1.1E-06 41.9 7.2 82 2-88 78-173 (274)
167 PTZ00185 ATPase alpha subunit; 95.8 0.06 1.3E-06 45.0 8.0 86 2-88 198-301 (574)
168 cd01131 PilT Pilus retraction 95.8 0.011 2.3E-07 43.4 3.4 80 1-91 9-89 (198)
169 CHL00195 ycf46 Ycf46; Provisio 95.8 0.09 2E-06 43.9 9.1 32 105-136 385-428 (489)
170 PRK08927 fliI flagellum-specif 95.8 0.078 1.7E-06 43.6 8.5 82 2-88 167-260 (442)
171 TIGR03575 selen_PSTK_euk L-ser 95.8 0.042 9E-07 43.7 6.8 17 1-17 7-23 (340)
172 PRK12678 transcription termina 95.8 0.014 3.1E-07 49.2 4.3 84 1-87 424-514 (672)
173 TIGR01040 V-ATPase_V1_B V-type 95.7 0.035 7.6E-07 45.7 6.4 86 2-88 150-259 (466)
174 TIGR03881 KaiC_arch_4 KaiC dom 95.7 0.05 1.1E-06 40.5 6.8 30 2-34 29-58 (229)
175 KOG0728 26S proteasome regulat 95.7 0.045 9.8E-07 41.6 6.4 16 1-16 189-204 (404)
176 TIGR02239 recomb_RAD51 DNA rep 95.7 0.043 9.4E-07 43.2 6.7 87 1-88 104-203 (316)
177 PRK06217 hypothetical protein; 95.7 0.019 4E-07 41.4 4.3 28 1-30 9-38 (183)
178 COG0593 DnaA ATPase involved i 95.7 0.19 4.1E-06 40.9 10.4 30 95-124 227-256 (408)
179 COG0466 Lon ATP-dependent Lon 95.7 0.11 2.4E-06 44.8 9.3 108 1-124 358-507 (782)
180 PRK07133 DNA polymerase III su 95.7 0.24 5.2E-06 43.2 11.5 39 105-143 170-220 (725)
181 TIGR03324 alt_F1F0_F1_al alter 95.7 0.036 7.8E-07 46.1 6.2 82 2-88 171-266 (497)
182 PRK03839 putative kinase; Prov 95.6 0.0063 1.4E-07 43.6 1.7 17 1-17 8-24 (180)
183 PRK05973 replicative DNA helic 95.6 0.081 1.7E-06 39.9 7.6 40 1-45 72-111 (237)
184 PRK09280 F0F1 ATP synthase sub 95.6 0.067 1.4E-06 44.2 7.7 85 2-88 153-250 (463)
185 KOG0736 Peroxisome assembly fa 95.6 0.07 1.5E-06 46.4 7.9 64 1-89 713-777 (953)
186 TIGR03305 alt_F1F0_F1_bet alte 95.6 0.065 1.4E-06 44.1 7.6 85 2-88 147-244 (449)
187 PRK06936 type III secretion sy 95.6 0.038 8.3E-07 45.3 6.2 82 2-88 171-264 (439)
188 KOG0744 AAA+-type ATPase [Post 95.6 0.021 4.6E-07 44.8 4.5 74 1-88 185-262 (423)
189 PRK11823 DNA repair protein Ra 95.6 0.023 5.1E-07 46.8 5.0 78 2-88 89-168 (446)
190 cd01122 GP4d_helicase GP4d_hel 95.6 0.16 3.5E-06 38.8 9.3 44 1-48 38-81 (271)
191 PRK08451 DNA polymerase III su 95.6 0.32 7E-06 41.1 11.6 38 105-142 169-217 (535)
192 PF07728 AAA_5: AAA domain (dy 95.6 0.026 5.7E-07 38.5 4.5 36 1-42 7-42 (139)
193 TIGR00064 ftsY signal recognit 95.6 0.073 1.6E-06 41.0 7.3 85 1-88 80-166 (272)
194 PF00485 PRK: Phosphoribulokin 95.5 0.076 1.7E-06 38.6 7.1 78 1-80 7-87 (194)
195 PRK14953 DNA polymerase III su 95.5 0.31 6.7E-06 40.8 11.4 39 105-143 171-220 (486)
196 PTZ00035 Rad51 protein; Provis 95.5 0.12 2.6E-06 41.1 8.7 86 1-87 126-224 (337)
197 PRK07594 type III secretion sy 95.5 0.051 1.1E-06 44.6 6.5 82 2-88 164-257 (433)
198 TIGR01041 ATP_syn_B_arch ATP s 95.5 0.055 1.2E-06 44.7 6.8 86 2-88 150-250 (458)
199 PRK13849 putative crown gall t 95.5 0.081 1.8E-06 39.7 7.2 38 2-42 11-48 (231)
200 PF13671 AAA_33: AAA domain; P 95.5 0.0094 2E-07 40.8 2.0 17 1-17 7-23 (143)
201 KOG0729 26S proteasome regulat 95.5 0.011 2.5E-07 45.1 2.6 60 1-88 219-282 (435)
202 TIGR01243 CDC48 AAA family ATP 95.5 0.083 1.8E-06 46.4 8.2 33 105-137 339-381 (733)
203 PRK08533 flagellar accessory p 95.5 0.1 2.2E-06 39.2 7.6 44 1-50 32-75 (230)
204 PRK06835 DNA replication prote 95.5 0.048 1E-06 43.2 6.1 27 2-31 192-218 (329)
205 PRK08233 hypothetical protein; 95.4 0.0095 2.1E-07 42.5 2.0 17 1-17 11-27 (182)
206 COG1618 Predicted nucleotide k 95.4 0.0096 2.1E-07 42.0 1.9 18 1-18 13-30 (179)
207 TIGR02655 circ_KaiC circadian 95.4 0.061 1.3E-06 44.9 6.9 81 1-87 271-364 (484)
208 PRK14948 DNA polymerase III su 95.4 0.41 8.8E-06 41.3 11.9 38 105-142 173-221 (620)
209 TIGR01039 atpD ATP synthase, F 95.4 0.048 1E-06 44.9 6.0 85 2-88 152-249 (461)
210 PRK09519 recA DNA recombinatio 95.3 0.062 1.4E-06 47.1 6.8 80 1-88 68-150 (790)
211 TIGR00416 sms DNA repair prote 95.3 0.048 1E-06 45.1 5.9 78 2-88 103-182 (454)
212 COG0563 Adk Adenylate kinase a 95.3 0.028 6.1E-07 40.5 4.0 17 1-17 8-24 (178)
213 PRK06002 fliI flagellum-specif 95.3 0.056 1.2E-06 44.4 6.2 83 2-88 174-266 (450)
214 KOG2004 Mitochondrial ATP-depe 95.3 0.16 3.5E-06 44.0 8.9 72 1-88 446-517 (906)
215 TIGR03498 FliI_clade3 flagella 95.3 0.04 8.7E-07 45.0 5.3 82 2-88 149-242 (418)
216 COG0572 Udk Uridine kinase [Nu 95.3 0.048 1E-06 40.4 5.2 69 2-77 17-85 (218)
217 PRK06647 DNA polymerase III su 95.3 0.42 9.1E-06 40.7 11.4 37 105-141 171-218 (563)
218 PF08433 KTI12: Chromatin asso 95.2 0.034 7.4E-07 42.8 4.5 18 1-18 9-26 (270)
219 TIGR03878 thermo_KaiC_2 KaiC d 95.2 0.096 2.1E-06 40.0 6.9 31 1-34 44-74 (259)
220 cd00984 DnaB_C DnaB helicase C 95.2 0.15 3.2E-06 38.2 7.9 42 1-46 21-62 (242)
221 TIGR00962 atpA proton transloc 95.2 0.051 1.1E-06 45.4 5.7 82 2-88 170-265 (501)
222 COG0470 HolB ATPase involved i 95.2 0.07 1.5E-06 41.6 6.3 17 1-17 32-48 (325)
223 TIGR00763 lon ATP-dependent pr 95.2 0.033 7.1E-07 49.2 4.8 17 1-17 355-371 (775)
224 PRK06762 hypothetical protein; 95.2 0.012 2.6E-07 41.5 1.8 17 1-17 10-26 (166)
225 COG2255 RuvB Holliday junction 95.1 0.5 1.1E-05 36.7 10.3 40 105-144 174-224 (332)
226 TIGR03346 chaperone_ClpB ATP-d 95.1 0.083 1.8E-06 47.2 7.2 77 1-88 603-679 (852)
227 COG1102 Cmk Cytidylate kinase 95.1 0.025 5.4E-07 40.0 3.1 38 1-52 8-45 (179)
228 PF07015 VirC1: VirC1 protein; 95.1 0.088 1.9E-06 39.4 6.2 34 2-38 11-44 (231)
229 PRK00625 shikimate kinase; Pro 95.1 0.013 2.8E-07 42.0 1.8 17 1-17 8-24 (173)
230 KOG0733 Nuclear AAA ATPase (VC 95.1 0.021 4.5E-07 48.4 3.1 63 1-88 553-616 (802)
231 cd01125 repA Hexameric Replica 95.1 0.16 3.5E-06 38.1 7.8 17 1-17 9-25 (239)
232 PF01583 APS_kinase: Adenylyls 95.1 0.018 4E-07 40.5 2.4 82 1-86 10-109 (156)
233 cd03214 ABC_Iron-Siderophores_ 95.1 0.18 3.9E-06 36.1 7.7 82 2-88 34-127 (180)
234 PRK08769 DNA polymerase III su 95.1 1.2 2.5E-05 35.3 12.7 38 105-142 165-207 (319)
235 PTZ00088 adenylate kinase 1; P 95.1 0.017 3.8E-07 43.3 2.4 17 1-17 14-30 (229)
236 cd01134 V_A-ATPase_A V/A-type 95.0 0.41 8.9E-06 38.3 10.1 40 2-46 166-206 (369)
237 cd02019 NK Nucleoside/nucleoti 95.0 0.016 3.4E-07 34.8 1.8 17 1-17 7-23 (69)
238 PRK12724 flagellar biosynthesi 95.0 0.075 1.6E-06 43.4 6.0 17 1-17 231-247 (432)
239 PF00154 RecA: recA bacterial 95.0 0.089 1.9E-06 41.5 6.3 79 2-88 62-143 (322)
240 PRK06871 DNA polymerase III su 95.0 1.4 3.1E-05 34.9 12.9 34 105-138 159-198 (325)
241 PRK14527 adenylate kinase; Pro 95.0 0.034 7.5E-07 40.3 3.7 17 1-17 14-30 (191)
242 CHL00059 atpA ATP synthase CF1 95.0 0.082 1.8E-06 43.8 6.2 82 2-88 150-245 (485)
243 PRK07196 fliI flagellum-specif 95.0 0.12 2.6E-06 42.4 7.1 82 2-88 164-257 (434)
244 PRK05688 fliI flagellum-specif 94.9 0.13 2.8E-06 42.4 7.3 82 2-88 177-270 (451)
245 PRK00279 adk adenylate kinase; 94.9 0.037 8.1E-07 40.9 3.9 17 1-17 8-24 (215)
246 PRK06090 DNA polymerase III su 94.9 1.4 3.1E-05 34.8 12.8 39 105-143 160-201 (319)
247 PRK05922 type III secretion sy 94.9 0.096 2.1E-06 43.0 6.4 82 2-88 166-259 (434)
248 PRK12723 flagellar biosynthesi 94.9 0.16 3.4E-06 41.2 7.6 83 1-88 182-266 (388)
249 PRK07721 fliI flagellum-specif 94.9 0.13 2.9E-06 42.3 7.2 83 2-88 167-260 (438)
250 TIGR02639 ClpA ATP-dependent C 94.9 0.086 1.9E-06 46.3 6.5 20 105-124 338-357 (731)
251 PRK09099 type III secretion sy 94.9 0.13 2.8E-06 42.3 7.1 82 2-88 172-265 (441)
252 COG1157 FliI Flagellar biosynt 94.9 0.14 3E-06 41.6 7.0 82 2-88 172-265 (441)
253 cd01136 ATPase_flagellum-secre 94.9 0.32 6.9E-06 38.5 9.0 82 2-88 78-171 (326)
254 TIGR02639 ClpA ATP-dependent C 94.8 0.084 1.8E-06 46.3 6.4 73 1-88 492-565 (731)
255 PRK05703 flhF flagellar biosyn 94.8 0.1 2.2E-06 42.9 6.4 80 1-86 229-309 (424)
256 COG0541 Ffh Signal recognition 94.8 0.15 3.3E-06 41.5 7.2 48 2-52 109-157 (451)
257 COG0542 clpA ATP-binding subun 94.8 0.028 6.2E-07 49.0 3.3 77 1-89 529-606 (786)
258 TIGR03496 FliI_clade1 flagella 94.8 0.24 5.2E-06 40.5 8.4 82 2-88 146-239 (411)
259 COG1192 Soj ATPases involved i 94.7 0.027 5.8E-07 42.8 2.8 31 2-34 12-42 (259)
260 KOG3347 Predicted nucleotide k 94.7 0.036 7.8E-07 38.7 3.0 60 2-75 16-75 (176)
261 PF01656 CbiA: CobQ/CobB/MinD/ 94.7 0.036 7.8E-07 39.8 3.3 37 2-41 8-44 (195)
262 PRK00131 aroK shikimate kinase 94.7 0.019 4E-07 40.6 1.7 17 1-17 12-28 (175)
263 cd02021 GntK Gluconate kinase 94.7 0.021 4.5E-07 39.6 1.9 17 1-17 7-23 (150)
264 KOG0730 AAA+-type ATPase [Post 94.7 0.24 5.2E-06 42.4 8.3 16 1-16 476-491 (693)
265 cd02025 PanK Pantothenate kina 94.6 0.26 5.7E-06 36.7 7.8 17 1-17 7-23 (220)
266 PHA02518 ParA-like protein; Pr 94.6 0.053 1.2E-06 39.6 4.1 36 2-40 10-45 (211)
267 PRK12727 flagellar biosynthesi 94.6 0.14 3.1E-06 43.1 6.9 81 1-87 358-439 (559)
268 PRK08058 DNA polymerase III su 94.6 0.5 1.1E-05 37.4 9.8 20 105-124 162-181 (329)
269 cd00227 CPT Chloramphenicol (C 94.6 0.021 4.6E-07 40.8 1.8 17 1-17 10-26 (175)
270 PRK13947 shikimate kinase; Pro 94.6 0.02 4.4E-07 40.5 1.7 17 1-17 9-25 (171)
271 PHA02544 44 clamp loader, smal 94.6 0.068 1.5E-06 41.8 4.8 17 1-17 51-67 (316)
272 PF02374 ArsA_ATPase: Anion-tr 94.6 0.034 7.3E-07 43.6 3.0 38 2-42 10-47 (305)
273 PF06745 KaiC: KaiC; InterPro 94.6 0.018 3.8E-07 42.9 1.4 83 1-88 27-127 (226)
274 COG0003 ArsA Predicted ATPase 94.6 0.044 9.6E-07 43.2 3.6 41 1-44 10-50 (322)
275 PRK06820 type III secretion sy 94.5 0.11 2.4E-06 42.7 5.9 82 2-88 172-265 (440)
276 PRK04196 V-type ATP synthase s 94.5 0.11 2.3E-06 43.1 5.9 85 2-88 152-252 (460)
277 PF12775 AAA_7: P-loop contain 94.5 0.025 5.5E-07 43.5 2.1 17 1-17 41-57 (272)
278 PRK11034 clpA ATP-dependent Cl 94.5 0.23 5E-06 43.7 8.2 20 105-124 342-361 (758)
279 TIGR01359 UMP_CMP_kin_fam UMP- 94.5 0.022 4.8E-07 40.8 1.8 17 1-17 7-23 (183)
280 PRK11889 flhF flagellar biosyn 94.5 0.2 4.3E-06 40.8 7.2 82 1-88 249-332 (436)
281 PF07726 AAA_3: ATPase family 94.5 0.016 3.5E-07 39.3 0.9 18 1-18 7-24 (131)
282 TIGR01351 adk adenylate kinase 94.5 0.05 1.1E-06 40.0 3.6 17 1-17 7-23 (210)
283 KOG0989 Replication factor C, 94.5 0.12 2.5E-06 40.4 5.6 40 105-144 181-232 (346)
284 PF00910 RNA_helicase: RNA hel 94.4 0.024 5.3E-07 37.1 1.6 17 1-17 6-22 (107)
285 PRK07399 DNA polymerase III su 94.4 1.1 2.3E-05 35.4 11.1 38 105-142 175-220 (314)
286 CHL00095 clpC Clp protease ATP 94.4 0.084 1.8E-06 47.0 5.4 17 1-17 547-563 (821)
287 KOG0734 AAA+-type ATPase conta 94.3 0.062 1.4E-06 45.0 4.1 60 1-88 345-408 (752)
288 KOG1514 Origin recognition com 94.3 1.3 2.9E-05 38.4 11.9 80 2-88 431-520 (767)
289 COG1223 Predicted ATPase (AAA+ 94.3 0.13 2.8E-06 39.4 5.5 17 1-17 159-175 (368)
290 PRK05563 DNA polymerase III su 94.3 1 2.3E-05 38.4 11.5 36 105-140 171-217 (559)
291 TIGR01313 therm_gnt_kin carboh 94.3 0.028 6.1E-07 39.5 1.9 17 1-17 6-22 (163)
292 PRK06793 fliI flagellum-specif 94.3 0.14 3.1E-06 42.0 6.1 82 2-88 165-258 (432)
293 TIGR02546 III_secr_ATP type II 94.3 0.49 1.1E-05 38.8 9.2 82 2-88 154-247 (422)
294 PRK12726 flagellar biosynthesi 94.2 0.28 6.1E-06 39.7 7.5 82 1-88 214-297 (407)
295 CHL00095 clpC Clp protease ATP 94.2 0.11 2.3E-06 46.3 5.7 17 1-17 208-224 (821)
296 PF03029 ATP_bind_1: Conserved 94.2 0.051 1.1E-06 41.0 3.3 29 1-32 4-32 (238)
297 COG0464 SpoVK ATPases of the A 94.2 0.065 1.4E-06 44.8 4.1 17 1-17 284-300 (494)
298 COG0467 RAD55 RecA-superfamily 94.2 0.039 8.4E-07 42.1 2.6 80 2-87 32-135 (260)
299 PRK09281 F0F1 ATP synthase sub 94.2 0.14 3.1E-06 42.8 6.0 82 2-88 171-266 (502)
300 PF08303 tRNA_lig_kinase: tRNA 94.2 0.078 1.7E-06 37.6 3.8 38 2-49 8-50 (168)
301 PHA00729 NTP-binding motif con 94.2 0.026 5.7E-07 42.1 1.6 40 104-143 119-163 (226)
302 TIGR01425 SRP54_euk signal rec 94.2 0.18 3.9E-06 41.3 6.5 17 1-17 108-124 (429)
303 PRK09302 circadian clock prote 94.2 0.21 4.5E-06 42.0 7.1 80 2-87 282-374 (509)
304 PRK13343 F0F1 ATP synthase sub 94.2 0.14 3E-06 42.8 5.9 82 2-88 171-266 (502)
305 cd03223 ABCD_peroxisomal_ALDP 94.1 0.3 6.5E-06 34.5 6.9 77 2-88 36-121 (166)
306 PRK14721 flhF flagellar biosyn 94.1 0.37 8.1E-06 39.5 8.2 51 1-52 199-250 (420)
307 PTZ00301 uridine kinase; Provi 94.1 0.028 6.1E-07 41.6 1.7 17 1-17 11-27 (210)
308 PRK07993 DNA polymerase III su 94.1 1.8 3.9E-05 34.4 11.9 35 105-139 160-200 (334)
309 PRK08472 fliI flagellum-specif 94.1 0.28 6.2E-06 40.3 7.5 81 2-88 166-258 (434)
310 PRK06547 hypothetical protein; 94.1 0.033 7.1E-07 39.9 1.9 17 1-17 23-39 (172)
311 TIGR01360 aden_kin_iso1 adenyl 94.1 0.029 6.3E-07 40.2 1.7 17 1-17 11-27 (188)
312 cd00544 CobU Adenosylcobinamid 94.1 0.47 1E-05 33.8 7.8 74 2-86 8-83 (169)
313 PRK04040 adenylate kinase; Pro 94.1 0.03 6.5E-07 40.7 1.7 17 1-17 10-26 (188)
314 PRK14532 adenylate kinase; Pro 94.1 0.032 6.9E-07 40.2 1.8 17 1-17 8-24 (188)
315 cd02042 ParA ParA and ParB of 94.1 0.033 7.2E-07 36.0 1.7 17 2-18 9-25 (104)
316 TIGR03345 VI_ClpV1 type VI sec 94.1 0.1 2.2E-06 46.5 5.2 17 1-17 604-620 (852)
317 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.0 0.25 5.4E-06 34.1 6.2 25 2-30 35-59 (144)
318 PRK13949 shikimate kinase; Pro 94.0 0.032 7E-07 39.7 1.8 17 1-17 9-25 (169)
319 TIGR02322 phosphon_PhnN phosph 94.0 0.035 7.6E-07 39.7 1.9 17 1-17 9-25 (179)
320 cd02040 NifH NifH gene encodes 94.0 0.064 1.4E-06 40.9 3.5 17 2-18 10-26 (270)
321 PRK11545 gntK gluconate kinase 94.0 0.032 7E-07 39.5 1.7 17 1-17 3-19 (163)
322 PRK10865 protein disaggregatio 94.0 0.16 3.6E-06 45.3 6.4 17 1-17 606-622 (857)
323 PRK13231 nitrogenase reductase 94.0 0.088 1.9E-06 40.1 4.2 17 2-18 11-27 (264)
324 COG3598 RepA RecA-family ATPas 94.0 0.2 4.3E-06 39.5 6.0 52 1-52 97-156 (402)
325 TIGR01026 fliI_yscN ATPase Fli 94.0 0.21 4.6E-06 41.2 6.6 82 2-88 172-265 (440)
326 TIGR00235 udk uridine kinase. 94.0 0.035 7.6E-07 40.8 1.9 17 1-17 14-30 (207)
327 PRK05480 uridine/cytidine kina 94.0 0.033 7.1E-07 40.9 1.8 17 1-17 14-30 (209)
328 TIGR03497 FliI_clade2 flagella 94.0 0.44 9.5E-06 39.0 8.3 82 2-88 146-239 (413)
329 PRK08699 DNA polymerase III su 93.9 0.7 1.5E-05 36.6 9.2 36 105-140 165-203 (325)
330 PRK06696 uridine kinase; Valid 93.9 0.036 7.7E-07 41.3 1.9 17 1-17 30-46 (223)
331 PRK13975 thymidylate kinase; P 93.9 0.035 7.6E-07 40.2 1.7 18 1-18 10-27 (196)
332 TIGR02640 gas_vesic_GvpN gas v 93.9 0.094 2E-06 40.1 4.1 35 1-41 29-63 (262)
333 PRK05800 cobU adenosylcobinami 93.8 0.3 6.5E-06 34.9 6.4 77 2-87 10-87 (170)
334 cd03222 ABC_RNaseL_inhibitor T 93.8 0.31 6.7E-06 35.0 6.5 16 2-17 34-49 (177)
335 CHL00060 atpB ATP synthase CF1 93.8 0.18 3.9E-06 42.0 5.9 85 2-88 170-274 (494)
336 PRK02118 V-type ATP synthase s 93.8 0.38 8.3E-06 39.5 7.7 82 2-88 149-243 (436)
337 cd00464 SK Shikimate kinase (S 93.8 0.038 8.2E-07 38.2 1.7 17 1-17 7-23 (154)
338 cd02024 NRK1 Nicotinamide ribo 93.7 0.038 8.3E-07 40.1 1.7 16 2-17 8-23 (187)
339 PRK14530 adenylate kinase; Pro 93.6 0.039 8.5E-07 40.8 1.7 17 1-17 11-27 (215)
340 PRK09302 circadian clock prote 93.6 0.26 5.7E-06 41.4 6.7 31 2-34 40-70 (509)
341 PRK00889 adenylylsulfate kinas 93.6 0.045 9.9E-07 39.0 1.9 17 1-17 12-28 (175)
342 cd02023 UMPK Uridine monophosp 93.6 0.045 9.8E-07 39.8 1.9 17 1-17 7-23 (198)
343 TIGR00602 rad24 checkpoint pro 93.6 0.041 8.8E-07 47.3 1.9 17 1-17 118-134 (637)
344 cd02020 CMPK Cytidine monophos 93.6 0.043 9.2E-07 37.6 1.6 17 1-17 7-23 (147)
345 PRK07960 fliI flagellum-specif 93.5 0.15 3.2E-06 42.1 4.9 82 2-88 184-277 (455)
346 KOG1532 GTPase XAB1, interacts 93.5 0.37 8.1E-06 37.2 6.6 49 1-52 27-86 (366)
347 PF00406 ADK: Adenylate kinase 93.5 0.041 8.9E-07 38.2 1.5 17 1-17 4-20 (151)
348 cd03216 ABC_Carb_Monos_I This 93.5 0.16 3.4E-06 35.9 4.4 26 2-31 35-60 (163)
349 PRK13946 shikimate kinase; Pro 93.5 0.048 1E-06 39.3 1.8 17 1-17 18-34 (184)
350 TIGR03574 selen_PSTK L-seryl-t 93.4 0.045 9.7E-07 41.4 1.7 17 1-17 7-23 (249)
351 COG2842 Uncharacterized ATPase 93.4 0.33 7.1E-06 37.6 6.3 75 1-88 102-177 (297)
352 KOG0739 AAA+-type ATPase [Post 93.4 0.23 4.9E-06 38.9 5.4 63 1-88 174-237 (439)
353 PF13245 AAA_19: Part of AAA d 93.4 0.1 2.2E-06 32.0 2.9 16 1-16 18-33 (76)
354 cd01428 ADK Adenylate kinase ( 93.4 0.049 1.1E-06 39.3 1.8 17 1-17 7-23 (194)
355 COG0529 CysC Adenylylsulfate k 93.4 0.053 1.1E-06 38.9 1.8 83 1-86 31-130 (197)
356 KOG0735 AAA+-type ATPase [Post 93.4 2 4.3E-05 37.7 11.3 63 1-88 709-772 (952)
357 PHA02530 pseT polynucleotide k 93.4 0.049 1.1E-06 42.3 1.9 17 1-17 10-26 (300)
358 PF03266 NTPase_1: NTPase; In 93.4 0.052 1.1E-06 38.7 1.9 17 1-17 7-23 (168)
359 PRK13886 conjugal transfer pro 93.3 0.22 4.9E-06 37.6 5.3 16 2-17 12-27 (241)
360 cd02036 MinD Bacterial cell di 93.3 0.052 1.1E-06 38.5 1.8 17 2-18 9-25 (179)
361 cd02037 MRP-like MRP (Multiple 93.3 0.049 1.1E-06 38.6 1.7 17 2-18 9-25 (169)
362 PRK14723 flhF flagellar biosyn 93.3 0.46 1E-05 41.8 7.8 80 1-86 193-273 (767)
363 PRK04192 V-type ATP synthase s 93.3 1 2.2E-05 38.4 9.5 81 2-87 236-335 (586)
364 PRK05201 hslU ATP-dependent pr 93.3 0.095 2.1E-06 42.8 3.4 17 1-17 58-74 (443)
365 TIGR01420 pilT_fam pilus retra 93.3 0.095 2.1E-06 41.7 3.4 80 1-90 130-209 (343)
366 cd01672 TMPK Thymidine monopho 93.3 0.18 3.9E-06 36.3 4.6 17 1-17 8-24 (200)
367 PRK13185 chlL protochlorophyll 93.2 0.096 2.1E-06 40.0 3.3 17 2-18 11-27 (270)
368 TIGR00390 hslU ATP-dependent p 93.2 0.12 2.5E-06 42.3 3.8 17 1-17 55-71 (441)
369 PRK10463 hydrogenase nickel in 93.2 0.25 5.4E-06 38.4 5.4 80 1-87 112-195 (290)
370 smart00763 AAA_PrkA PrkA AAA d 93.2 0.062 1.3E-06 42.9 2.2 18 1-18 86-103 (361)
371 PRK07667 uridine kinase; Provi 93.2 0.059 1.3E-06 39.2 1.9 17 1-17 25-41 (193)
372 PF02367 UPF0079: Uncharacteri 93.2 0.058 1.3E-06 36.4 1.7 15 3-17 25-39 (123)
373 PRK12339 2-phosphoglycerate ki 93.1 0.059 1.3E-06 39.5 1.9 17 1-17 11-27 (197)
374 KOG0991 Replication factor C, 93.1 0.15 3.3E-06 38.4 4.0 37 1-38 56-92 (333)
375 cd00046 DEXDc DEAD-like helica 93.1 0.21 4.6E-06 33.0 4.5 30 1-31 8-37 (144)
376 cd02027 APSK Adenosine 5'-phos 93.0 0.065 1.4E-06 37.3 1.9 17 1-17 7-23 (149)
377 PRK06995 flhF flagellar biosyn 93.0 0.54 1.2E-05 39.3 7.5 51 1-52 264-315 (484)
378 PRK10078 ribose 1,5-bisphospho 93.0 0.067 1.4E-06 38.6 2.0 17 1-17 10-26 (186)
379 PRK03731 aroL shikimate kinase 93.0 0.057 1.2E-06 38.2 1.6 17 1-17 10-26 (171)
380 TIGR01281 DPOR_bchL light-inde 93.0 0.059 1.3E-06 41.2 1.7 17 2-18 9-25 (268)
381 COG1428 Deoxynucleoside kinase 93.0 0.058 1.3E-06 39.7 1.6 17 1-17 12-28 (216)
382 COG1158 Rho Transcription term 92.9 0.41 8.9E-06 37.9 6.2 84 1-87 181-271 (422)
383 cd02028 UMPK_like Uridine mono 92.9 0.064 1.4E-06 38.6 1.8 17 1-17 7-23 (179)
384 PRK14529 adenylate kinase; Pro 92.9 0.39 8.5E-06 35.9 6.0 17 1-17 8-24 (223)
385 PRK06761 hypothetical protein; 92.9 0.1 2.3E-06 40.3 3.0 28 1-30 11-38 (282)
386 PRK11034 clpA ATP-dependent Cl 92.9 0.26 5.6E-06 43.4 5.7 17 1-17 496-512 (758)
387 PRK10733 hflB ATP-dependent me 92.9 0.21 4.5E-06 43.3 5.0 17 1-17 193-209 (644)
388 COG1936 Predicted nucleotide k 92.9 0.064 1.4E-06 38.3 1.6 13 2-14 9-21 (180)
389 PRK05057 aroK shikimate kinase 92.9 0.066 1.4E-06 38.2 1.8 17 1-17 12-28 (172)
390 KOG0743 AAA+-type ATPase [Post 92.8 0.5 1.1E-05 38.8 6.8 17 1-17 243-259 (457)
391 PRK05748 replicative DNA helic 92.8 0.57 1.2E-05 38.7 7.4 44 2-49 212-255 (448)
392 PF01202 SKI: Shikimate kinase 92.8 0.058 1.3E-06 37.9 1.4 17 2-18 1-17 (158)
393 TIGR03263 guanyl_kin guanylate 92.8 0.077 1.7E-06 37.8 2.1 17 1-17 9-25 (180)
394 PRK10037 cell division protein 92.8 0.11 2.4E-06 39.4 3.0 17 2-18 11-27 (250)
395 PRK04182 cytidylate kinase; Pr 92.8 0.071 1.5E-06 37.9 1.9 17 1-17 8-24 (180)
396 PRK13230 nitrogenase reductase 92.8 0.091 2E-06 40.4 2.6 17 2-18 10-26 (279)
397 PRK14531 adenylate kinase; Pro 92.7 0.065 1.4E-06 38.6 1.6 17 1-17 10-26 (183)
398 TIGR02858 spore_III_AA stage I 92.7 0.58 1.3E-05 36.0 6.9 26 1-30 119-144 (270)
399 PRK13948 shikimate kinase; Pro 92.7 0.072 1.6E-06 38.5 1.8 17 1-17 18-34 (182)
400 cd01983 Fer4_NifH The Fer4_Nif 92.7 0.077 1.7E-06 33.2 1.8 17 2-18 8-24 (99)
401 PRK13765 ATP-dependent proteas 92.7 0.13 2.8E-06 44.3 3.6 47 1-50 58-104 (637)
402 PF13086 AAA_11: AAA domain; P 92.7 0.11 2.5E-06 38.1 3.0 47 1-47 25-75 (236)
403 TIGR00041 DTMP_kinase thymidyl 92.7 0.24 5.3E-06 35.7 4.6 17 1-17 11-27 (195)
404 PRK13233 nifH nitrogenase redu 92.7 0.067 1.5E-06 41.0 1.7 17 2-18 11-27 (275)
405 cd03110 Fer4_NifH_child This p 92.7 0.075 1.6E-06 37.9 1.9 16 2-17 9-24 (179)
406 cd02029 PRK_like Phosphoribulo 92.7 0.39 8.4E-06 37.0 5.7 72 2-77 8-85 (277)
407 TIGR01969 minD_arch cell divis 92.6 0.072 1.6E-06 40.0 1.8 16 2-17 10-25 (251)
408 PRK10865 protein disaggregatio 92.6 0.29 6.3E-06 43.8 5.8 17 1-17 207-223 (857)
409 COG4088 Predicted nucleotide k 92.6 0.067 1.5E-06 39.5 1.5 17 1-17 9-25 (261)
410 TIGR00764 lon_rel lon-related 92.6 0.26 5.7E-06 42.3 5.3 47 1-50 45-91 (608)
411 TIGR01287 nifH nitrogenase iro 92.6 0.1 2.3E-06 40.0 2.6 17 2-18 9-25 (275)
412 PF13521 AAA_28: AAA domain; P 92.5 0.064 1.4E-06 37.7 1.3 15 2-16 8-22 (163)
413 PF07088 GvpD: GvpD gas vesicl 92.5 0.36 7.7E-06 39.2 5.5 22 1-25 18-39 (484)
414 PF08477 Miro: Miro-like prote 92.5 0.091 2E-06 34.5 2.0 16 2-17 8-23 (119)
415 PRK15453 phosphoribulokinase; 92.5 0.72 1.6E-05 35.8 7.0 69 2-75 14-89 (290)
416 cd00561 CobA_CobO_BtuR ATP:cor 92.5 0.66 1.4E-05 32.8 6.3 15 2-16 11-25 (159)
417 TIGR00150 HI0065_YjeE ATPase, 92.5 0.081 1.7E-06 36.2 1.7 16 2-17 31-46 (133)
418 PRK06305 DNA polymerase III su 92.5 2.2 4.8E-05 35.4 10.4 39 105-143 173-223 (451)
419 PRK10416 signal recognition pa 92.4 0.71 1.5E-05 36.4 7.1 17 1-17 122-138 (318)
420 PRK03846 adenylylsulfate kinas 92.4 0.087 1.9E-06 38.4 1.9 17 1-17 32-48 (198)
421 PF09848 DUF2075: Uncharacteri 92.4 0.33 7.3E-06 38.7 5.4 33 1-34 9-41 (352)
422 PRK13235 nifH nitrogenase redu 92.4 0.078 1.7E-06 40.7 1.7 17 2-18 10-26 (274)
423 PRK14965 DNA polymerase III su 92.4 2 4.3E-05 36.9 10.2 39 105-143 171-221 (576)
424 PRK07165 F0F1 ATP synthase sub 92.3 0.66 1.4E-05 38.8 7.1 82 2-88 152-245 (507)
425 TIGR00708 cobA cob(I)alamin ad 92.3 0.36 7.9E-06 34.6 4.9 15 2-16 14-28 (173)
426 COG3640 CooC CO dehydrogenase 92.3 0.2 4.4E-06 37.6 3.6 16 2-17 9-24 (255)
427 TIGR03371 cellulose_yhjQ cellu 92.2 0.18 4E-06 37.7 3.6 17 2-18 11-27 (246)
428 PRK02496 adk adenylate kinase; 92.2 0.086 1.9E-06 37.9 1.7 17 1-17 9-25 (184)
429 cd02032 Bchl_like This family 92.2 0.15 3.2E-06 39.0 3.1 17 2-18 9-25 (267)
430 PRK13232 nifH nitrogenase redu 92.2 0.089 1.9E-06 40.3 1.8 17 2-18 10-26 (273)
431 PLN02200 adenylate kinase fami 92.1 0.089 1.9E-06 39.6 1.7 17 1-17 51-67 (234)
432 cd00071 GMPK Guanosine monopho 92.1 0.11 2.4E-06 35.7 2.0 17 1-17 7-23 (137)
433 COG0703 AroK Shikimate kinase 92.1 0.11 2.4E-06 37.2 2.0 18 1-18 10-27 (172)
434 COG0194 Gmk Guanylate kinase [ 92.0 0.1 2.3E-06 37.7 1.9 16 1-16 12-27 (191)
435 COG1373 Predicted ATPase (AAA+ 92.0 0.5 1.1E-05 38.5 6.0 44 76-119 94-161 (398)
436 PRK10646 ADP-binding protein; 92.0 0.095 2.1E-06 36.8 1.7 15 3-17 38-52 (153)
437 PRK10787 DNA-binding ATP-depen 92.0 0.44 9.6E-06 42.2 6.0 22 105-126 486-507 (784)
438 PRK00300 gmk guanylate kinase; 92.0 0.1 2.3E-06 38.0 1.9 17 1-17 13-29 (205)
439 PF05970 PIF1: PIF1-like helic 92.0 0.19 4.2E-06 40.3 3.6 18 1-18 30-47 (364)
440 TIGR02173 cyt_kin_arch cytidyl 91.9 0.11 2.3E-06 36.6 1.9 17 1-17 8-24 (171)
441 KOG0726 26S proteasome regulat 91.9 0.26 5.7E-06 38.4 4.0 17 1-17 227-243 (440)
442 PF02223 Thymidylate_kin: Thym 91.9 0.25 5.5E-06 35.4 3.9 18 1-18 4-21 (186)
443 PF07724 AAA_2: AAA domain (Cd 91.9 0.11 2.5E-06 37.1 2.0 33 1-35 11-43 (171)
444 TIGR03346 chaperone_ClpB ATP-d 91.8 0.46 1E-05 42.6 6.1 17 1-17 202-218 (852)
445 TIGR01042 V-ATPase_V1_A V-type 91.8 1.8 4E-05 36.9 9.1 81 2-87 235-336 (591)
446 PF06564 YhjQ: YhjQ protein; 91.7 0.11 2.4E-06 39.3 1.8 17 2-18 11-27 (243)
447 TIGR00960 3a0501s02 Type II (G 91.7 0.21 4.6E-06 36.7 3.3 17 1-17 37-53 (216)
448 PF05673 DUF815: Protein of un 91.7 0.41 9E-06 36.2 4.8 16 2-17 61-76 (249)
449 COG1149 MinD superfamily P-loo 91.7 0.17 3.7E-06 38.7 2.8 25 2-29 11-35 (284)
450 COG1124 DppF ABC-type dipeptid 91.7 0.11 2.5E-06 39.1 1.8 47 42-88 121-171 (252)
451 COG4778 PhnL ABC-type phosphon 91.6 0.23 5E-06 35.7 3.2 27 1-31 45-71 (235)
452 cd00820 PEPCK_HprK Phosphoenol 91.6 0.13 2.7E-06 33.9 1.8 14 1-14 23-36 (107)
453 cd02117 NifH_like This family 91.6 0.11 2.4E-06 38.2 1.7 17 2-18 9-25 (212)
454 cd03269 ABC_putative_ATPase Th 91.5 0.23 5.1E-06 36.4 3.4 16 2-17 35-50 (210)
455 TIGR03453 partition_RepA plasm 91.5 0.22 4.8E-06 40.3 3.5 17 2-18 114-130 (387)
456 PRK10875 recD exonuclease V su 91.5 0.35 7.7E-06 41.6 4.8 46 2-47 176-221 (615)
457 PRK14528 adenylate kinase; Pro 91.5 0.12 2.5E-06 37.4 1.7 17 1-17 9-25 (186)
458 COG0125 Tmk Thymidylate kinase 91.4 0.34 7.4E-06 35.8 4.1 17 2-18 12-28 (208)
459 PRK09825 idnK D-gluconate kina 91.4 0.14 2.9E-06 36.8 1.9 17 1-17 11-27 (176)
460 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.4 0.24 5.2E-06 36.5 3.3 17 1-17 38-54 (218)
461 PRK09165 replicative DNA helic 91.4 0.68 1.5E-05 38.9 6.3 46 2-49 226-283 (497)
462 TIGR01968 minD_bact septum sit 91.4 0.12 2.6E-06 39.0 1.7 17 2-18 11-27 (261)
463 CHL00072 chlL photochlorophyll 91.3 0.16 3.5E-06 39.4 2.5 17 2-18 9-25 (290)
464 COG0714 MoxR-like ATPases [Gen 91.3 0.28 6.2E-06 38.7 3.9 35 1-41 51-85 (329)
465 cd00880 Era_like Era (E. coli 91.3 0.14 3.1E-06 34.6 2.0 16 1-16 4-19 (163)
466 PRK13973 thymidylate kinase; P 91.3 0.46 9.9E-06 35.1 4.8 17 1-17 11-27 (213)
467 PF03796 DnaB_C: DnaB-like hel 91.3 0.46 9.9E-06 36.1 4.9 44 2-49 28-71 (259)
468 cd02038 FleN-like FleN is a me 91.3 1.3 2.9E-05 30.2 6.8 17 2-18 9-25 (139)
469 PRK06851 hypothetical protein; 91.3 0.18 3.9E-06 40.5 2.7 38 1-40 222-259 (367)
470 TIGR00554 panK_bact pantothena 91.3 1.1 2.4E-05 34.9 6.9 16 2-17 71-86 (290)
471 cd03111 CpaE_like This protein 91.2 0.15 3.2E-06 33.3 1.8 17 2-18 9-25 (106)
472 PRK09270 nucleoside triphospha 91.2 0.14 3E-06 38.2 1.9 17 1-17 41-57 (229)
473 cd03265 ABC_DrrA DrrA is the A 91.2 0.27 5.9E-06 36.3 3.4 16 2-17 35-50 (220)
474 COG1100 GTPase SAR1 and relate 91.2 0.14 3.1E-06 37.5 2.0 17 1-17 13-29 (219)
475 TIGR03880 KaiC_arch_3 KaiC dom 91.2 0.47 1E-05 35.2 4.7 38 2-44 25-62 (224)
476 cd00550 ArsA_ATPase Oxyanion-t 91.1 0.24 5.3E-06 37.7 3.2 17 2-18 9-25 (254)
477 COG1061 SSL2 DNA or RNA helica 91.1 0.48 1E-05 39.1 5.1 82 1-89 63-159 (442)
478 PRK13869 plasmid-partitioning 91.0 0.25 5.4E-06 40.3 3.4 17 2-18 131-147 (405)
479 PRK14737 gmk guanylate kinase; 91.0 0.16 3.5E-06 36.8 2.0 17 1-17 12-28 (186)
480 cd03264 ABC_drug_resistance_li 91.0 0.28 6E-06 36.0 3.3 17 1-17 33-49 (211)
481 TIGR02673 FtsE cell division A 90.9 0.28 6E-06 36.1 3.3 16 2-17 37-52 (214)
482 PF10662 PduV-EutP: Ethanolami 90.9 0.15 3.2E-06 35.4 1.7 16 2-17 10-25 (143)
483 PRK06964 DNA polymerase III su 90.9 7.1 0.00015 31.2 13.4 36 105-140 184-222 (342)
484 cd03301 ABC_MalK_N The N-termi 90.8 0.3 6.5E-06 35.8 3.4 16 2-17 35-50 (213)
485 CHL00175 minD septum-site dete 90.8 0.15 3.2E-06 39.3 1.7 17 2-18 25-41 (281)
486 TIGR01166 cbiO cobalt transpor 90.8 0.3 6.5E-06 35.2 3.3 16 2-17 27-42 (190)
487 PRK13768 GTPase; Provisional 90.8 0.26 5.6E-06 37.5 3.0 17 1-17 10-26 (253)
488 PF00625 Guanylate_kin: Guanyl 90.8 0.25 5.5E-06 35.4 2.9 28 1-31 10-37 (183)
489 PRK10818 cell division inhibit 90.7 0.15 3.3E-06 38.9 1.8 17 2-18 12-28 (270)
490 cd03229 ABC_Class3 This class 90.7 0.33 7E-06 34.7 3.4 25 2-30 35-59 (178)
491 PRK08356 hypothetical protein; 90.7 0.16 3.5E-06 36.9 1.9 14 1-14 13-26 (195)
492 PF03205 MobB: Molybdopterin g 90.7 0.27 5.9E-06 33.9 2.8 31 2-34 9-39 (140)
493 TIGR02655 circ_KaiC circadian 90.7 0.44 9.5E-06 39.8 4.5 32 1-34 29-60 (484)
494 PRK13695 putative NTPase; Prov 90.6 0.16 3.4E-06 36.2 1.7 17 1-17 8-24 (174)
495 cd01673 dNK Deoxyribonucleosid 90.6 0.18 3.8E-06 36.5 1.9 16 1-16 7-22 (193)
496 PRK05439 pantothenate kinase; 90.6 1.3 2.8E-05 34.8 6.8 72 2-77 95-166 (311)
497 cd04139 RalA_RalB RalA/RalB su 90.6 0.19 4.1E-06 34.7 2.0 16 1-16 8-23 (164)
498 PRK06851 hypothetical protein; 90.5 0.23 5.1E-06 39.9 2.7 37 1-39 38-74 (367)
499 COG0645 Predicted kinase [Gene 90.5 0.18 3.8E-06 35.9 1.8 17 1-17 9-25 (170)
500 smart00173 RAS Ras subfamily o 90.5 0.19 4E-06 34.9 1.9 15 2-16 9-23 (164)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-42 Score=293.67 Aligned_cols=179 Identities=49% Similarity=0.888 Sum_probs=164.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
|||+||||||++++|+...++++||.++||++|++++...++.+|++.++.. .........++.+..+.+.|+++||+|
T Consensus 187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~-~~~~~~~~~~~~~~~i~~~L~~krfll 265 (889)
T KOG4658|consen 187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL-DEEWEDKEEDELASKLLNLLEGKRFLL 265 (889)
T ss_pred CCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC-CcccchhhHHHHHHHHHHHhccCceEE
Confidence 8999999999999999745999999999999999999999999999999875 334444455899999999999999999
Q ss_pred EEeCCCCcccccc-c------------------cccccc-ccccceEeecCCChhhhHHHHHHH--------------HH
Q 046006 81 LLDDKWERVDLNK-G------------------LFVCGL-VEANKNFKVECLSDNDAWELLRQK--------------LA 126 (180)
Q Consensus 81 VlDdv~~~~~l~~-g------------------~~~~~~-~~~~~~~~l~~L~~~~a~~Lf~~~--------------~~ 126 (180)
||||||+..+|+. | ..|+.. +++...++++.|+++|||+||.+. .+
T Consensus 266 vLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~la 345 (889)
T KOG4658|consen 266 VLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELA 345 (889)
T ss_pred EEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHH
Confidence 9999999988766 2 667776 777889999999999999999999 79
Q ss_pred HHHHHHcCCChHHHHHHHHHhcCCCCCCce--------------------------------------------eecCCC
Q 046006 127 QTVAKKCVGLPLALITIGRAIACKRTPREW--------------------------------------------SLYPED 162 (180)
Q Consensus 127 ~~i~~~c~g~PLal~~~~~~L~~~~~~~~w--------------------------------------------s~fp~~ 162 (180)
++++++|+|+|||+.++|+.|+.+.+..+| |+||+|
T Consensus 346 k~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED 425 (889)
T KOG4658|consen 346 KEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPED 425 (889)
T ss_pred HHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcc
Confidence 999999999999999999999999999999 999999
Q ss_pred cccCHHHHHHHHHhcCCC
Q 046006 163 YLISKEILIYCWIDKFHI 180 (180)
Q Consensus 163 ~~i~~~~Li~~Wiaeg~i 180 (180)
|.|+.+.|+.+|||||||
T Consensus 426 ~~I~~e~Li~yWiaEGfi 443 (889)
T KOG4658|consen 426 YEIKKEKLIEYWIAEGFI 443 (889)
T ss_pred cccchHHHHHHHHhccCc
Confidence 999999999999999997
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=2.8e-37 Score=237.92 Aligned_cols=178 Identities=37% Similarity=0.630 Sum_probs=147.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC-CCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSW-KNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~l~~~L~~k~~L 79 (180)
|||+||||||++++++. .++++|++++|++++...+..+++..|+++++.. .... ...+.++....+++.|+++++|
T Consensus 27 ~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~L 104 (287)
T PF00931_consen 27 MGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP-DSSISDPKDIEELQDQLRELLKDKRCL 104 (287)
T ss_dssp STTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC--STSSCCSSHHHHHHHHHHHHCCTSEE
T ss_pred CCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhccccce
Confidence 79999999999999985 4779999999999999999999999999999876 3333 5677888999999999999999
Q ss_pred EEEeCCCCcccccc----------c---------ccccccccc-cceEeecCCChhhhHHHHHHH--------------H
Q 046006 80 LLLDDKWERVDLNK----------G---------LFVCGLVEA-NKNFKVECLSDNDAWELLRQK--------------L 125 (180)
Q Consensus 80 lVlDdv~~~~~l~~----------g---------~~~~~~~~~-~~~~~l~~L~~~~a~~Lf~~~--------------~ 125 (180)
|||||||+...+.. | ..++..... ...+++++|+++||++||.+. .
T Consensus 105 lVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~ 184 (287)
T PF00931_consen 105 LVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDL 184 (287)
T ss_dssp EEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTH
T ss_pred eeeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999887633 2 233333333 568999999999999999988 6
Q ss_pred HHHHHHHcCCChHHHHHHHHHhcCCCCCCce-------------------------------------------eecCCC
Q 046006 126 AQTVAKKCVGLPLALITIGRAIACKRTPREW-------------------------------------------SLYPED 162 (180)
Q Consensus 126 ~~~i~~~c~g~PLal~~~~~~L~~~~~~~~w-------------------------------------------s~fp~~ 162 (180)
+++|++.|+|+||||+++|++|+.+.+..+| ++||++
T Consensus 185 ~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~ 264 (287)
T PF00931_consen 185 AKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEG 264 (287)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCC
Confidence 8899999999999999999999766677888 999999
Q ss_pred cccCHHHHHHHHHhcCCC
Q 046006 163 YLISKEILIYCWIDKFHI 180 (180)
Q Consensus 163 ~~i~~~~Li~~Wiaeg~i 180 (180)
+.|+.+.|+++|++||||
T Consensus 265 ~~i~~~~li~lW~~e~~i 282 (287)
T PF00931_consen 265 VPIPRERLIRLWVAEGFI 282 (287)
T ss_dssp S-EEHHHHHHHHTT-HHT
T ss_pred ceECHHHHHHHHHHCCCC
Confidence 999999999999999997
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=2.1e-22 Score=179.54 Aligned_cols=146 Identities=22% Similarity=0.273 Sum_probs=107.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEe---CCC-----------CC-HHHHHHHHHHHhCCCCCCCCCCcChHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVV---SKD-----------LQ-LEKIQEIVGKKVGLLDGDSWKNKNSEEK 65 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~---~~~-----------~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 65 (180)
|||+||||||+++|+++. .+|++.+|+.. +.. .+ ...+...++..+... . ......
T Consensus 215 ~gGiGKTTLA~~l~~~l~---~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~-~-~~~~~~---- 285 (1153)
T PLN03210 215 SSGIGKTTIARALFSRLS---RQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDK-K-DIKIYH---- 285 (1153)
T ss_pred CCCCchHHHHHHHHHHHh---hcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCC-C-CcccCC----
Confidence 799999999999999854 78999888752 111 01 123444555554222 1 111111
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCcccccc----------c---------ccccccccccceEeecCCChhhhHHHHHHH--
Q 046006 66 ALEIFRFLSKKKFVLLLDDKWERVDLNK----------G---------LFVCGLVEANKNFKVECLSDNDAWELLRQK-- 124 (180)
Q Consensus 66 ~~~l~~~L~~k~~LlVlDdv~~~~~l~~----------g---------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-- 124 (180)
...+++.|+++|+||||||||+..+++. | ..++..++...+|+++.|+.++|++||+++
T Consensus 286 ~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 286 LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence 2457788999999999999998766543 2 233334455679999999999999999987
Q ss_pred -----------HHHHHHHHcCCChHHHHHHHHHhcCCCCCCce
Q 046006 125 -----------LAQTVAKKCVGLPLALITIGRAIACKRTPREW 156 (180)
Q Consensus 125 -----------~~~~i~~~c~g~PLal~~~~~~L~~~~~~~~w 156 (180)
.+++|+++|+|+|||++++|++|++ ++..+|
T Consensus 366 ~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W 407 (1153)
T PLN03210 366 KKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDW 407 (1153)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHH
Confidence 6889999999999999999999998 467888
No 4
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.25 E-value=4.1e-10 Score=86.06 Aligned_cols=139 Identities=17% Similarity=0.266 Sum_probs=90.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-----CC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-----SK 75 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-----~~ 75 (180)
++|+|||||++.+++.+. . ..+ ..+|+ .....+..+++..|+..++.+ .. ..+.......+.+.+ .+
T Consensus 51 ~~G~GKTtl~~~l~~~l~-~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~-~~---~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 51 EVGAGKTTLIRNLLKRLD-Q-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLE-TE---GRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCCCCHHHHHHHHHHhcC-C-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCC-CC---CCCHHHHHHHHHHHHHHHHhCC
Confidence 479999999999998853 1 111 12233 333457778999999998765 21 222233333333322 67
Q ss_pred CcEEEEEeCCCCccc--ccc--------------------c-ccc----cc-c---c--cccceEeecCCChhhhHHHHH
Q 046006 76 KKFVLLLDDKWERVD--LNK--------------------G-LFV----CG-L---V--EANKNFKVECLSDNDAWELLR 122 (180)
Q Consensus 76 k~~LlVlDdv~~~~~--l~~--------------------g-~~~----~~-~---~--~~~~~~~l~~L~~~~a~~Lf~ 122 (180)
++.++|+||++.... ++. | ... .. . . .....+.+++++.+|..+++.
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~ 202 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIE 202 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHH
Confidence 889999999987531 110 1 000 00 0 0 012356899999999999887
Q ss_pred HH---------------HHHHHHHHcCCChHHHHHHHHHh
Q 046006 123 QK---------------LAQTVAKKCVGLPLALITIGRAI 147 (180)
Q Consensus 123 ~~---------------~~~~i~~~c~g~PLal~~~~~~L 147 (180)
.. ..+.|++.|+|.|..+..++..+
T Consensus 203 ~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 203 HRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 54 78899999999999999888877
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=1.8e-08 Score=88.93 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=91.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCC----------CCCCcChHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGD----------SWKNKNSEEKALEI 69 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~----------~~~~~~~~~~~~~l 69 (180)
++|.||||++.+..++. . .+.|+++.. +.+...+...++..+...... .....+.......+
T Consensus 40 paG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (903)
T PRK04841 40 PAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQL 112 (903)
T ss_pred CCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHH
Confidence 58999999999988652 2 589999865 446677777777777421010 00112233344444
Q ss_pred HHHhC--CCcEEEEEeCCCCccccc------c-------c-cc-cccccc----------ccceEeec----CCChhhhH
Q 046006 70 FRFLS--KKKFVLLLDDKWERVDLN------K-------G-LF-VCGLVE----------ANKNFKVE----CLSDNDAW 118 (180)
Q Consensus 70 ~~~L~--~k~~LlVlDdv~~~~~l~------~-------g-~~-~~~~~~----------~~~~~~l~----~L~~~~a~ 118 (180)
...+. +.+++|||||+....+-. . + .- ++++.. .....++. +|+.+|+.
T Consensus 113 ~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~ 192 (903)
T PRK04841 113 FIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQ 192 (903)
T ss_pred HHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHH
Confidence 44443 679999999997753211 1 1 00 111110 11234455 89999999
Q ss_pred HHHHHH--------HHHHHHHHcCCChHHHHHHHHHhcC
Q 046006 119 ELLRQK--------LAQTVAKKCVGLPLALITIGRAIAC 149 (180)
Q Consensus 119 ~Lf~~~--------~~~~i~~~c~g~PLal~~~~~~L~~ 149 (180)
++|... ...+|.+.|+|.|+++..++..+..
T Consensus 193 ~ll~~~~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 193 QFFDQRLSSPIEAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 999865 7789999999999999999877754
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.77 E-value=2.8e-07 Score=74.21 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=91.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--CCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--KKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~ 78 (180)
++|+|||++++.+++++. .....-..++++.....+...++..|++++... .......+.++....+.+.+. +++.
T Consensus 63 ~~GtGKT~l~~~v~~~l~-~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (394)
T PRK00411 63 PPGTGKTTTVKKVFEELE-EIAVKVVYVYINCQIDRTRYAIFSEIARQLFGH-PPPSSGLSFDELFDKIAEYLDERDRVL 140 (394)
T ss_pred CCCCCHHHHHHHHHHHHH-HhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHHHhcCCEE
Confidence 489999999999999863 222123456677666678889999999998652 112233456777778888775 4578
Q ss_pred EEEEeCCCCccc------ccc---------c-------------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006 79 VLLLDDKWERVD------LNK---------G-------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 79 LlVlDdv~~~~~------l~~---------g-------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 124 (180)
+||||+++.... +.. + ..+.+... ...+.+++++.++..+++..+
T Consensus 141 viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~-~~~i~f~py~~~e~~~il~~r 219 (394)
T PRK00411 141 IVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFR-PEEIYFPPYTADEIFDILKDR 219 (394)
T ss_pred EEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCC-cceeecCCCCHHHHHHHHHHH
Confidence 999999987430 100 0 00111111 135789999999999988876
Q ss_pred -------------HHHHHHHHc----CCChHHHHHHHH
Q 046006 125 -------------LAQTVAKKC----VGLPLALITIGR 145 (180)
Q Consensus 125 -------------~~~~i~~~c----~g~PLal~~~~~ 145 (180)
..+.+++.+ |..+.|+.++-.
T Consensus 220 ~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 220 VEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred HHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 334444444 556777766543
No 7
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.73 E-value=2e-08 Score=68.35 Aligned_cols=85 Identities=18% Similarity=0.260 Sum_probs=62.8
Q ss_pred CCCCcHHHHHHHHHccccccc--CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCc-
Q 046006 1 MGGVGKTTLLTHINNKFLVSS--TDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKK- 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~- 77 (180)
.+|+|||++++++++++.... ..-..++|++.....+...+...|++.++.. . ....+..++.+.+.+.+...+
T Consensus 12 ~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~-~--~~~~~~~~l~~~~~~~l~~~~~ 88 (131)
T PF13401_consen 12 PPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLP-L--KSRQTSDELRSLLIDALDRRRV 88 (131)
T ss_dssp -TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-S-S--SSTS-HHHHHHHHHHHHHHCTE
T ss_pred CCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcc-c--cccCCHHHHHHHHHHHHHhcCC
Confidence 379999999999998853110 0134567999888779999999999999876 2 224567788888888887554
Q ss_pred EEEEEeCCCCc
Q 046006 78 FVLLLDDKWER 88 (180)
Q Consensus 78 ~LlVlDdv~~~ 88 (180)
.+||+||++..
T Consensus 89 ~~lviDe~~~l 99 (131)
T PF13401_consen 89 VLLVIDEADHL 99 (131)
T ss_dssp EEEEEETTHHH
T ss_pred eEEEEeChHhc
Confidence 59999998765
No 8
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.70 E-value=6.5e-08 Score=73.18 Aligned_cols=85 Identities=21% Similarity=0.143 Sum_probs=55.4
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCCc----ChHHHHHHHHHH-h
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD--LQLEKIQEIVGKKVGLLDGDSWKNK----NSEEKALEIFRF-L 73 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~~~~l~~~-L 73 (180)
.+|+|||||++.++++.. ..+|+.++|+.+..+ .+..++++.+...+-.. ..+.+.. -........... -
T Consensus 24 ~~G~GKTTLlr~I~n~l~--~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~-~~~~~~~~~~~~~~~~~~~a~~~~~ 100 (249)
T cd01128 24 PPKAGKTTLLQSIANAIT--KNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAS-TFDEPPERHVQVAEMVLEKAKRLVE 100 (249)
T ss_pred CCCCCHHHHHHHHHhccc--cccCCeEEEEEEccCCCccHHHHHHHhccEEEEe-cCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999953 248999999997665 78999999984333221 0011111 111222222222 2
Q ss_pred CCCcEEEEEeCCCCc
Q 046006 74 SKKKFVLLLDDKWER 88 (180)
Q Consensus 74 ~~k~~LlVlDdv~~~ 88 (180)
.+++.++++|++...
T Consensus 101 ~G~~vll~iDei~r~ 115 (249)
T cd01128 101 HGKDVVILLDSITRL 115 (249)
T ss_pred CCCCEEEEEECHHHh
Confidence 488999999998764
No 9
>PF05729 NACHT: NACHT domain
Probab=98.62 E-value=3.4e-07 Score=64.49 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=67.3
Q ss_pred CCCCcHHHHHHHHHcccccccCC----CCeEEEEEeCCCCCHH---HHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTD----FDCVIWIVVSKDLQLE---KIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL 73 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L 73 (180)
.+|+||||+++.+++++.. ... +...+|++........ .+...|..+.... ...... .+...+
T Consensus 8 ~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~~~~~~---~~~~~~ 77 (166)
T PF05729_consen 8 EPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES------IAPIEE---LLQELL 77 (166)
T ss_pred CCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc------hhhhHH---HHHHHH
Confidence 3799999999999988642 222 3466777765533322 3444444444221 111111 222222
Q ss_pred -CCCcEEEEEeCCCCcccccc---------------------c------------ccccccccccceEeecCCChhhhHH
Q 046006 74 -SKKKFVLLLDDKWERVDLNK---------------------G------------LFVCGLVEANKNFKVECLSDNDAWE 119 (180)
Q Consensus 74 -~~k~~LlVlDdv~~~~~l~~---------------------g------------~~~~~~~~~~~~~~l~~L~~~~a~~ 119 (180)
..+++++|+|++++...-.. + ............+++++|++++..+
T Consensus 78 ~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQ 157 (166)
T ss_pred HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHH
Confidence 57899999999987643110 1 1122222333578999999999999
Q ss_pred HHHHH
Q 046006 120 LLRQK 124 (180)
Q Consensus 120 Lf~~~ 124 (180)
++.++
T Consensus 158 ~~~~~ 162 (166)
T PF05729_consen 158 YLRKY 162 (166)
T ss_pred HHHHH
Confidence 98764
No 10
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.59 E-value=1e-07 Score=75.80 Aligned_cols=82 Identities=21% Similarity=0.212 Sum_probs=54.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCCCCCCCcChHHHH------HHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL--QLEKIQEIVGKKVGLLDGDSWKNKNSEEKA------LEIFRF 72 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~------~~l~~~ 72 (180)
+||+||||||+.++++.. .++|+.++|+.++... ...++++.|...+-.+ ....+..... -...+.
T Consensus 177 ppGvGKTTLaK~Ian~I~--~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~s----t~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 177 PPKAGKTVLLQNIANSIT--TNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAS----TFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred CCCCChhHHHHHHHHHHH--hhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEE----CCCCCHHHHHHHHHHHHHHHHH
Confidence 489999999999999953 3489999999988877 7778888886322111 1112222111 111122
Q ss_pred --hCCCcEEEEEeCCCCc
Q 046006 73 --LSKKKFVLLLDDKWER 88 (180)
Q Consensus 73 --L~~k~~LlVlDdv~~~ 88 (180)
-.++.++|++|++...
T Consensus 251 ~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 251 LVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHcCCCEEEEEEChHHH
Confidence 2579999999998754
No 11
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.47 E-value=1.5e-06 Score=64.53 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=27.8
Q ss_pred ceEeecCCChhhhHHHHHHH------------HHHHHHHHcCCChHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK------------LAQTVAKKCVGLPLALIT 142 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~------------~~~~i~~~c~g~PLal~~ 142 (180)
..+.+++|+.+++.+++... ..++|...+||+|..|..
T Consensus 184 ~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 184 SHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45899999999999999982 678999999999998764
No 12
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.47 E-value=2.4e-07 Score=73.46 Aligned_cols=139 Identities=21% Similarity=0.268 Sum_probs=98.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
.|||||||++-++.+ .. .-| +++.++....-.+...+.-.+...++.. ..+.+.....+.....++|.+
T Consensus 22 ~ggvgkttl~~~~a~-~~---~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~------~~~g~~~~~~~~~~~~~rr~l 91 (414)
T COG3903 22 AGGVGKTTLALQAAH-AA---SEYADGVAFVDLAPITDPALVFPTLAGALGLH------VQPGDSAVDTLVRRIGDRRAL 91 (414)
T ss_pred cCccceehhhhhhHh-Hh---hhcccceeeeeccccCchhHhHHHHHhhcccc------cccchHHHHHHHHHHhhhhHH
Confidence 489999999999988 32 556 4555565555556666666666667664 223344555677788899999
Q ss_pred EEEeCCCCcccccc--------c---------ccccccccccceEeecCCChh-hhHHHHHHH----------------H
Q 046006 80 LLLDDKWERVDLNK--------G---------LFVCGLVEANKNFKVECLSDN-DAWELLRQK----------------L 125 (180)
Q Consensus 80 lVlDdv~~~~~l~~--------g---------~~~~~~~~~~~~~~l~~L~~~-~a~~Lf~~~----------------~ 125 (180)
+|+||..+..+--. + ..-......+..+.+++|+.. ++.++|... .
T Consensus 92 lvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~ 171 (414)
T COG3903 92 LVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAA 171 (414)
T ss_pred HHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHH
Confidence 99999876532111 1 222222334467788888875 788998877 7
Q ss_pred HHHHHHHcCCChHHHHHHHHHhcC
Q 046006 126 AQTVAKKCVGLPLALITIGRAIAC 149 (180)
Q Consensus 126 ~~~i~~~c~g~PLal~~~~~~L~~ 149 (180)
..+|+++..|.|++|..+++..+.
T Consensus 172 v~~icr~ldg~~laielaaarv~s 195 (414)
T COG3903 172 VAEICRRLDGIPLAIELAAARVRS 195 (414)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHh
Confidence 899999999999999999988865
No 13
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.43 E-value=1.1e-06 Score=70.23 Aligned_cols=85 Identities=20% Similarity=0.151 Sum_probs=56.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC--CCHHHHHHHHHHHhCCCCCCCCCCcChHHHH----HHHHHH-h
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD--LQLEKIQEIVGKKVGLLDGDSWKNKNSEEKA----LEIFRF-L 73 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~----~~l~~~-L 73 (180)
.+|+|||||++.+++.+. .++|+..+|+.+... .+..++++.+...+-.. .-+.+....-... ...... -
T Consensus 176 ~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvas-t~d~p~~~~~~va~~v~e~Ae~~~~ 252 (415)
T TIGR00767 176 PPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVAS-TFDEPASRHVQVAEMVIEKAKRLVE 252 (415)
T ss_pred CCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEe-cCCCChHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999863 348999999998755 68999999996544222 1111111111111 112222 2
Q ss_pred CCCcEEEEEeCCCCc
Q 046006 74 SKKKFVLLLDDKWER 88 (180)
Q Consensus 74 ~~k~~LlVlDdv~~~ 88 (180)
.+++.+|++|++...
T Consensus 253 ~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 253 HKKDVVILLDSITRL 267 (415)
T ss_pred cCCCeEEEEEChhHH
Confidence 589999999999764
No 14
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.40 E-value=2e-06 Score=68.55 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=77.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCC---CeEEEEEeCCCCCHHHHHHHHHHHhC---CCCCCCCCCcChHHHHHHHHHHhC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDF---DCVIWIVVSKDLQLEKIQEIVGKKVG---LLDGDSWKNKNSEEKALEIFRFLS 74 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~~~~i~~~l~---~~~~~~~~~~~~~~~~~~l~~~L~ 74 (180)
++|+|||++++.+++++....... -..+|++.....+...++..|++++. .. ......+..+....+.+.+.
T Consensus 48 ~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~~l~~~l~ 125 (365)
T TIGR02928 48 KTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEE--VPTTGLSTSEVFRRLYKELN 125 (365)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCC--CCCCCCCHHHHHHHHHHHHH
Confidence 589999999999998753211111 13567777776778889999999983 22 11122345556666666663
Q ss_pred --CCcEEEEEeCCCCcc----c-------c---cc--c---------c----------cccccccccceEeecCCChhhh
Q 046006 75 --KKKFVLLLDDKWERV----D-------L---NK--G---------L----------FVCGLVEANKNFKVECLSDNDA 117 (180)
Q Consensus 75 --~k~~LlVlDdv~~~~----~-------l---~~--g---------~----------~~~~~~~~~~~~~l~~L~~~~a 117 (180)
+++.+||||+++... . + .. + . .+.+... ...+.+++++.++-
T Consensus 126 ~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~-~~~i~f~p~~~~e~ 204 (365)
T TIGR02928 126 ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLC-EEEIIFPPYDAEEL 204 (365)
T ss_pred hcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCC-cceeeeCCCCHHHH
Confidence 568899999998762 0 1 00 0 0 0111111 14578999999999
Q ss_pred HHHHHHH
Q 046006 118 WELLRQK 124 (180)
Q Consensus 118 ~~Lf~~~ 124 (180)
.+++..+
T Consensus 205 ~~il~~r 211 (365)
T TIGR02928 205 RDILENR 211 (365)
T ss_pred HHHHHHH
Confidence 9998876
No 15
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.30 E-value=1.6e-05 Score=61.91 Aligned_cols=136 Identities=13% Similarity=0.075 Sum_probs=79.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCCcChHHHHHHHHHHhCCCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG---DSWKNKNSEEKALEIFRFLSKKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~k~ 77 (180)
++|+|||+||+.+++... ..+ ..+..+...... .+...+..++.... ++....+ ......+...+.+.+
T Consensus 38 p~G~GKT~la~~ia~~~~---~~~---~~~~~~~~~~~~-~l~~~l~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~ 109 (305)
T TIGR00635 38 PPGLGKTTLAHIIANEMG---VNL---KITSGPALEKPG-DLAAILTNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFR 109 (305)
T ss_pred CCCCCHHHHHHHHHHHhC---CCE---EEeccchhcCch-hHHHHHHhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhh
Confidence 589999999999999852 111 122211111222 22333344432200 0001111 223455777777888
Q ss_pred EEEEEeCCCCcccccc--------c---------ccccccccccceEeecCCChhhhHHHHHHH-----------HHHHH
Q 046006 78 FVLLLDDKWERVDLNK--------G---------LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTV 129 (180)
Q Consensus 78 ~LlVlDdv~~~~~l~~--------g---------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i 129 (180)
..+|+|+..+...+.. | ..+.+++ ...+.+++++.++..+++.+. ....|
T Consensus 110 ~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~--~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~i 187 (305)
T TIGR00635 110 LDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRF--GIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEI 187 (305)
T ss_pred eeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhc--ceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 8889998766544332 1 0111112 246789999999999999877 67899
Q ss_pred HHHcCCChHHHHHHHHH
Q 046006 130 AKKCVGLPLALITIGRA 146 (180)
Q Consensus 130 ~~~c~g~PLal~~~~~~ 146 (180)
++.|+|.|-.+..+...
T Consensus 188 a~~~~G~pR~~~~ll~~ 204 (305)
T TIGR00635 188 ARRSRGTPRIANRLLRR 204 (305)
T ss_pred HHHhCCCcchHHHHHHH
Confidence 99999999766555544
No 16
>PF14516 AAA_35: AAA-like domain
Probab=98.23 E-value=5.5e-05 Score=59.80 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=92.0
Q ss_pred CCcHHHHHHHHHcccccccCCCCeEEEEEeCC-----CCCHHHHH----HHHHHHhCCCCCCC-----CCCcChHHHHHH
Q 046006 3 GVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-----DLQLEKIQ----EIVGKKVGLLDGDS-----WKNKNSEEKALE 68 (180)
Q Consensus 3 GiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~----~~i~~~l~~~~~~~-----~~~~~~~~~~~~ 68 (180)
.+|||+|...+.+... +..+ ..+++++.. ..+...++ ..|.++++.+ ..- ....+.......
T Consensus 41 q~GKTSll~~l~~~l~--~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~-~~l~~~w~~~~~~~~~~~~~ 116 (331)
T PF14516_consen 41 QMGKTSLLLRLLERLQ--QQGY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLD-EKLDEYWDEEIGSKISCTEY 116 (331)
T ss_pred cCCHHHHHHHHHHHHH--HCCC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCC-hhHHHHHHHhcCChhhHHHH
Confidence 5899999999988853 2344 345676543 12455444 4445555543 100 011233344445
Q ss_pred HHHHh---CCCcEEEEEeCCCCcccccc------c-------------------------------ccc-cccccccceE
Q 046006 69 IFRFL---SKKKFVLLLDDKWERVDLNK------G-------------------------------LFV-CGLVEANKNF 107 (180)
Q Consensus 69 l~~~L---~~k~~LlVlDdv~~~~~l~~------g-------------------------------~~~-~~~~~~~~~~ 107 (180)
+.+.+ .+++.+|+||+++....... + .+. .+-......+
T Consensus 117 ~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i 196 (331)
T PF14516_consen 117 FEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPI 196 (331)
T ss_pred HHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCCcccccce
Confidence 55543 26899999999987633111 1 000 0011122568
Q ss_pred eecCCChhhhHHHHHHH-------HHHHHHHHcCCChHHHHHHHHHhcC
Q 046006 108 KVECLSDNDAWELLRQK-------LAQTVAKKCVGLPLALITIGRAIAC 149 (180)
Q Consensus 108 ~l~~L~~~~a~~Lf~~~-------~~~~i~~~c~g~PLal~~~~~~L~~ 149 (180)
+|++++.+|..+|+.++ ..++|...++|+|.-+..++..+..
T Consensus 197 ~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 197 ELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred eCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999988 7899999999999999999999965
No 17
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.23 E-value=3e-05 Score=61.13 Aligned_cols=136 Identities=13% Similarity=0.081 Sum_probs=79.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCCcChHHHHHHHHHHhCCCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG---DSWKNKNSEEKALEIFRFLSKKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~k~ 77 (180)
++|+|||+||+.+++... ..+ ..++.+ .......+..++..+..... ++....+ ....+.+...+.+.+
T Consensus 59 ppG~GKT~la~~ia~~l~---~~~---~~~~~~-~~~~~~~l~~~l~~l~~~~vl~IDEi~~l~-~~~~e~l~~~~e~~~ 130 (328)
T PRK00080 59 PPGLGKTTLANIIANEMG---VNI---RITSGP-ALEKPGDLAAILTNLEEGDVLFIDEIHRLS-PVVEEILYPAMEDFR 130 (328)
T ss_pred CCCccHHHHHHHHHHHhC---CCe---EEEecc-cccChHHHHHHHHhcccCCEEEEecHhhcc-hHHHHHHHHHHHhcc
Confidence 589999999999999853 111 122221 11222233444454432200 0001111 123344666777788
Q ss_pred EEEEEeCCCCcccccc--------c---------ccccccccccceEeecCCChhhhHHHHHHH-----------HHHHH
Q 046006 78 FVLLLDDKWERVDLNK--------G---------LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTV 129 (180)
Q Consensus 78 ~LlVlDdv~~~~~l~~--------g---------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i 129 (180)
..+++|+..+...+.. | ..+.+++ ...+++++++.++..+++.+. ....|
T Consensus 131 ~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf--~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~i 208 (328)
T PRK00080 131 LDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRF--GIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEI 208 (328)
T ss_pred eeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhc--CeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 8888888665543321 1 1111111 246889999999999999977 68899
Q ss_pred HHHcCCChHHHHHHHHH
Q 046006 130 AKKCVGLPLALITIGRA 146 (180)
Q Consensus 130 ~~~c~g~PLal~~~~~~ 146 (180)
++.|+|.|-.+..+...
T Consensus 209 a~~~~G~pR~a~~~l~~ 225 (328)
T PRK00080 209 ARRSRGTPRIANRLLRR 225 (328)
T ss_pred HHHcCCCchHHHHHHHH
Confidence 99999999766555543
No 18
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.21 E-value=1.5e-05 Score=63.29 Aligned_cols=96 Identities=25% Similarity=0.241 Sum_probs=57.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHH-HhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFR-FLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~L~~k~~L 79 (180)
+||+||||||+.+..... ..| ..+|-..+- ..+..+..+.-++ ...+++.+
T Consensus 56 PPG~GKTTlA~liA~~~~---~~f-----~~~sAv~~g--------------------vkdlr~i~e~a~~~~~~gr~ti 107 (436)
T COG2256 56 PPGTGKTTLARLIAGTTN---AAF-----EALSAVTSG--------------------VKDLREIIEEARKNRLLGRRTI 107 (436)
T ss_pred CCCCCHHHHHHHHHHhhC---Cce-----EEecccccc--------------------HHHHHHHHHHHHHHHhcCCceE
Confidence 589999999999988742 333 222221111 1222223333322 23488999
Q ss_pred EEEeCCCCcccc---------ccc--------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006 80 LLLDDKWERVDL---------NKG--------------LFVCGLVEANKNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 80 lVlDdv~~~~~l---------~~g--------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 124 (180)
|.+|+|..-+.- +.| .-.....+-..++.+++|+.+|-.+++.+-
T Consensus 108 LflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 108 LFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred EEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHH
Confidence 999999865422 223 001111123368999999999999998883
No 19
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.21 E-value=2.9e-05 Score=66.81 Aligned_cols=145 Identities=19% Similarity=0.216 Sum_probs=97.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCC-----------CCCCcChHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGD-----------SWKNKNSEEKALE 68 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~-----------~~~~~~~~~~~~~ 68 (180)
+.|.|||||+.+.+... ..-..+.|++++++ .++..++..++..++.. .+ .....+.......
T Consensus 45 PAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~~~-~p~~~~~a~~l~q~~~~~~l~~l~~~ 119 (894)
T COG2909 45 PAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQQA-TPTLGDEAQTLLQKHQYVSLESLLSS 119 (894)
T ss_pred CCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHHHh-CccccHHHHHHHHhcccccHHHHHHH
Confidence 57999999999998642 33356899998765 57888888888888632 11 1123345555666
Q ss_pred HHHHhC--CCcEEEEEeCCCCccc--ccc-----------c--ccccccc----c------ccceEeec----CCChhhh
Q 046006 69 IFRFLS--KKKFVLLLDDKWERVD--LNK-----------G--LFVCGLV----E------ANKNFKVE----CLSDNDA 117 (180)
Q Consensus 69 l~~~L~--~k~~LlVlDdv~~~~~--l~~-----------g--~~~~~~~----~------~~~~~~l~----~L~~~~a 117 (180)
+..-+. .++.++||||.--..+ +.. + -.+.++. + .....++. .++.+|+
T Consensus 120 L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~ 199 (894)
T COG2909 120 LLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEA 199 (894)
T ss_pred HHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHH
Confidence 666554 5689999999754432 111 1 1111111 1 11122222 5899999
Q ss_pred HHHHHHH--------HHHHHHHHcCCChHHHHHHHHHhcCC
Q 046006 118 WELLRQK--------LAQTVAKKCVGLPLALITIGRAIACK 150 (180)
Q Consensus 118 ~~Lf~~~--------~~~~i~~~c~g~PLal~~~~~~L~~~ 150 (180)
.++|... ..+.+.+..+|.+-|+..++=.++.+
T Consensus 200 ~~fl~~~~~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 200 AAFLNDRGSLPLDAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred HHHHHHcCCCCCChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 9999988 78999999999999999999888743
No 20
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.2e-05 Score=62.76 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=86.4
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--CCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--KKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~ 78 (180)
.+|+|||+.++.++..+.......+ .++|+.-...+..+++..|+++++.. .....+..+....+.+.+. ++..
T Consensus 50 ~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~~~~---p~~g~~~~~~~~~l~~~~~~~~~~~ 125 (366)
T COG1474 50 PTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKLGKV---PLTGDSSLEILKRLYDNLSKKGKTV 125 (366)
T ss_pred CCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHcCCC---CCCCCchHHHHHHHHHHHHhcCCeE
Confidence 3799999999999998753323333 78999999999999999999999632 2233456667777777774 5899
Q ss_pred EEEEeCCCCccccc-c-----------c--------------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006 79 VLLLDDKWERVDLN-K-----------G--------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 79 LlVlDdv~~~~~l~-~-----------g--------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 124 (180)
++|||+++....-. . + .++.+..+... +..+|-+.+|-.+.+..+
T Consensus 126 IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~-I~F~pY~a~el~~Il~~R 202 (366)
T COG1474 126 IVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSE-IVFPPYTAEELYDILRER 202 (366)
T ss_pred EEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcce-eeeCCCCHHHHHHHHHHH
Confidence 99999998753221 0 0 34444444433 778888899988888887
No 21
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.93 E-value=0.00015 Score=59.05 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=30.2
Q ss_pred ceEeecCCChhhhHHHHHHH--------------HHHHHHHHcCCChHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK--------------LAQTVAKKCVGLPLALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~--------------~~~~i~~~c~g~PLal~~~ 143 (180)
..+.+.+++.++..+++.+. ..+.|++.|+|.|..+..+
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 57889999999999998874 3457888899988655433
No 22
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.91 E-value=4.5e-05 Score=62.11 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=52.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--CCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--KKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~ 78 (180)
++|+|||++|+.+++.+ .....|+.+.||.+++.++..+++..+ ... ...... ......+.+..... ++++
T Consensus 202 ppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~----rP~-~vgy~~-~~G~f~~~~~~A~~~p~~~~ 274 (459)
T PRK11331 202 PPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGY----RPN-GVGFRR-KDGIFYNFCQQAKEQPEKKY 274 (459)
T ss_pred CCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhccc----CCC-CCCeEe-cCchHHHHHHHHHhcccCCc
Confidence 68999999999999886 344577888899999988877775422 010 000000 01112223333322 4689
Q ss_pred EEEEeCCCCcc
Q 046006 79 VLLLDDKWERV 89 (180)
Q Consensus 79 LlVlDdv~~~~ 89 (180)
+||+|++...+
T Consensus 275 vliIDEINRan 285 (459)
T PRK11331 275 VFIIDEINRAN 285 (459)
T ss_pred EEEEehhhccC
Confidence 99999998764
No 23
>PRK06893 DNA replication initiation factor; Validated
Probab=97.87 E-value=0.0002 Score=53.68 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=38.7
Q ss_pred cccccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006 96 FVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI 147 (180)
Q Consensus 96 ~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L 147 (180)
++.+++.....+++++++.++.++++.+. ...-|++++.|..-.+..+-..|
T Consensus 145 ~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 145 DLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred hHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 34444555568899999999999999977 67788888988776665444444
No 24
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.85 E-value=9.9e-05 Score=58.79 Aligned_cols=84 Identities=20% Similarity=0.183 Sum_probs=52.9
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeE-EEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCc---ChHHHHHHHHHHh--C
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCV-IWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNK---NSEEKALEIFRFL--S 74 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~---~~~~~~~~l~~~L--~ 74 (180)
+|+|||||++.+++... .++-+.. +|+.+++. ....++.+.+...+..+ ..+.... ..........+.+ .
T Consensus 142 pGtGKTTLl~~la~~i~--~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas-t~de~~~~~~~v~~~~~~~Ae~f~~~ 218 (380)
T PRK12608 142 PRAGKTVLLQQIAAAVA--ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS-TFDRPPDEHIRVAELVLERAKRLVEQ 218 (380)
T ss_pred CCCCHHHHHHHHHHHHH--hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEee-cCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 79999999999988752 2344553 67677764 47888999888877543 1111111 1111222333333 5
Q ss_pred CCcEEEEEeCCCCc
Q 046006 75 KKKFVLLLDDKWER 88 (180)
Q Consensus 75 ~k~~LlVlDdv~~~ 88 (180)
+++.+||+|++...
T Consensus 219 GkdVVLvlDsltr~ 232 (380)
T PRK12608 219 GKDVVILLDSLTRL 232 (380)
T ss_pred CCCEEEEEeCcHHH
Confidence 89999999998643
No 25
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.84 E-value=0.00031 Score=57.79 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=78.1
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL 81 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV 81 (180)
+|+|||.|++.+++.+...... ..++++ +..+++..+...+... ......+++.+++ .-+||
T Consensus 150 ~G~GKTHLl~Ai~~~l~~~~~~-~~v~yv------~~~~f~~~~~~~l~~~----------~~~~~~~~~~~~~-~dvLi 211 (450)
T PRK14087 150 SGMGKTHLLKAAKNYIESNFSD-LKVSYM------SGDEFARKAVDILQKT----------HKEIEQFKNEICQ-NDVLI 211 (450)
T ss_pred CCCcHHHHHHHHHHHHHHhCCC-CeEEEE------EHHHHHHHHHHHHHHh----------hhHHHHHHHHhcc-CCEEE
Confidence 6999999999999864211111 233444 3456666666665321 0122334444443 34788
Q ss_pred EeCCCCccc-------c----cc----c------------------ccccccccccceEeecCCChhhhHHHHHHH----
Q 046006 82 LDDKWERVD-------L----NK----G------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK---- 124 (180)
Q Consensus 82 lDdv~~~~~-------l----~~----g------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~---- 124 (180)
+||+..... + +. | .++.+++...-+..+++++.++-.+++.++
T Consensus 212 IDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~ 291 (450)
T PRK14087 212 IDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ 291 (450)
T ss_pred EeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence 899865421 0 00 1 334444445567889999999999999877
Q ss_pred ---------HHHHHHHHcCCChHHHHHHHHHh
Q 046006 125 ---------LAQTVAKKCVGLPLALITIGRAI 147 (180)
Q Consensus 125 ---------~~~~i~~~c~g~PLal~~~~~~L 147 (180)
...-|++.+.|.|-.+.-+...+
T Consensus 292 gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 292 NIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 45668888888887765554333
No 26
>PRK08727 hypothetical protein; Validated
Probab=97.81 E-value=0.00022 Score=53.61 Aligned_cols=45 Identities=11% Similarity=0.002 Sum_probs=33.4
Q ss_pred cccccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 96 FVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 96 ~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
++.+++.....+++++++.++-.+++.++ ....|++.+.|-.-.+
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 34444444568899999999999999985 6778888888765444
No 27
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.79 E-value=0.00038 Score=53.80 Aligned_cols=83 Identities=13% Similarity=0.178 Sum_probs=59.5
Q ss_pred CCCcHHHHHHHHHcccccccCCCC----eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFD----CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KK 76 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~----~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k 76 (180)
+|.|||+++++++..+....+ -+ .++.|.+...++...+...|+.+++.+ . ....+...+...+.+.|+ -+
T Consensus 70 snnGKT~Ii~rF~~~hp~~~d-~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP-~--~~~~~~~~~~~~~~~llr~~~ 145 (302)
T PF05621_consen 70 SNNGKTMIIERFRRLHPPQSD-EDAERIPVVYVQMPPEPDERRFYSAILEALGAP-Y--RPRDRVAKLEQQVLRLLRRLG 145 (302)
T ss_pred CCCcHHHHHHHHHHHCCCCCC-CCCccccEEEEecCCCCChHHHHHHHHHHhCcc-c--CCCCCHHHHHHHHHHHHHHcC
Confidence 689999999999977642111 11 366677888999999999999999887 2 223445555666666664 34
Q ss_pred cEEEEEeCCCCc
Q 046006 77 KFVLLLDDKWER 88 (180)
Q Consensus 77 ~~LlVlDdv~~~ 88 (180)
--+||+|++.+.
T Consensus 146 vrmLIIDE~H~l 157 (302)
T PF05621_consen 146 VRMLIIDEFHNL 157 (302)
T ss_pred CcEEEeechHHH
Confidence 558999999764
No 28
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.75 E-value=0.00012 Score=49.25 Aligned_cols=81 Identities=23% Similarity=0.106 Sum_probs=44.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCC-cEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKK-KFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k-~~L 79 (180)
.+|+||||+|+.++.... .....++.++.+........... .... ...............+.+..+.. ..+
T Consensus 10 ~~G~GKTtl~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 10 PPGSGKTTLARALARELG---PPGGGVIYIDGEDILEEVLDQLL-LIIV----GGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCCCcHHHHHHHHHhccC---CCCCCEEEECCEEccccCHHHHH-hhhh----hccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 479999999999999863 11124566654443322222211 1111 11122233344444555555544 499
Q ss_pred EEEeCCCCcc
Q 046006 80 LLLDDKWERV 89 (180)
Q Consensus 80 lVlDdv~~~~ 89 (180)
+++|++....
T Consensus 82 iiiDei~~~~ 91 (148)
T smart00382 82 LILDEITSLL 91 (148)
T ss_pred EEEECCcccC
Confidence 9999998764
No 29
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.75 E-value=0.00014 Score=49.48 Aligned_cols=70 Identities=24% Similarity=0.155 Sum_probs=37.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
.+|+|||++++.+++... ..-..++++...+..........+... ............++.++
T Consensus 27 ~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l 88 (151)
T cd00009 27 PPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF---------------LVRLLFELAEKAKPGVL 88 (151)
T ss_pred CCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh---------------hHhHHHHhhccCCCeEE
Confidence 479999999999999853 112345555544332222111111000 01111122234567899
Q ss_pred EEeCCCCc
Q 046006 81 LLDDKWER 88 (180)
Q Consensus 81 VlDdv~~~ 88 (180)
++||++..
T Consensus 89 ilDe~~~~ 96 (151)
T cd00009 89 FIDEIDSL 96 (151)
T ss_pred EEeChhhh
Confidence 99999864
No 30
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.00078 Score=50.73 Aligned_cols=137 Identities=19% Similarity=0.205 Sum_probs=86.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-CCCc-E
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-SKKK-F 78 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~k~-~ 78 (180)
-|+|||.+++.+...+. -+.++=+.++. ..+...+...++..+..+ ....-....++..+.+.... ++++ .
T Consensus 60 vGsGKTv~~Ral~~s~~-----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~~~~~~~e~~~~~L~al~~~g~r~v 133 (269)
T COG3267 60 VGSGKTVLRRALLASLN-----EDQVAVVVIDKPTLSDATLLEAIVADLESQ-PKVNVNAVLEQIDRELAALVKKGKRPV 133 (269)
T ss_pred CCCchhHHHHHHHHhcC-----CCceEEEEecCcchhHHHHHHHHHHHhccC-ccchhHHHHHHHHHHHHHHHHhCCCCe
Confidence 38999999996655531 12223255443 557888889998888663 21111223334444444444 4666 8
Q ss_pred EEEEeCCCCccc--ccc--------------------c-ccccccc---------cccce-EeecCCChhhhHHHHHHH-
Q 046006 79 VLLLDDKWERVD--LNK--------------------G-LFVCGLV---------EANKN-FKVECLSDNDAWELLRQK- 124 (180)
Q Consensus 79 LlVlDdv~~~~~--l~~--------------------g-~~~~~~~---------~~~~~-~~l~~L~~~~a~~Lf~~~- 124 (180)
.++.||..+... ++. | ..+...+ .-..+ |+++|++.++...++..+
T Consensus 134 ~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~L 213 (269)
T COG3267 134 VLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRL 213 (269)
T ss_pred EEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHH
Confidence 999999876531 111 1 1111100 01123 899999999999888888
Q ss_pred -------------HHHHHHHHcCCChHHHHHHH
Q 046006 125 -------------LAQTVAKKCVGLPLALITIG 144 (180)
Q Consensus 125 -------------~~~~i~~~c~g~PLal~~~~ 144 (180)
....|.....|.|.++..++
T Consensus 214 e~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 214 EGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred hccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 68889999999999987655
No 31
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.70 E-value=0.00036 Score=51.94 Aligned_cols=50 Identities=12% Similarity=0.006 Sum_probs=32.7
Q ss_pred ccccccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006 95 LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG 144 (180)
Q Consensus 95 ~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~ 144 (180)
.++.+++.....+++++++.++-.+++.+. ...-|++.+.+..-.+..+-
T Consensus 149 ~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 149 PDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred hhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHH
Confidence 445555566678999999999999999987 56677777776665555443
No 32
>PF13173 AAA_14: AAA domain
Probab=97.69 E-value=6.9e-05 Score=50.93 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=41.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
+.|+|||||+++++.++. ....+++++.......... +.+ ..+.+.+...+++.++
T Consensus 10 ~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~-------------------~~~-~~~~~~~~~~~~~~~i 65 (128)
T PF13173_consen 10 PRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLA-------------------DPD-LLEYFLELIKPGKKYI 65 (128)
T ss_pred CCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHh-------------------hhh-hHHHHHHhhccCCcEE
Confidence 358999999999998842 3345667665543221100 000 2233333344477899
Q ss_pred EEeCCCCcccccc
Q 046006 81 LLDDKWERVDLNK 93 (180)
Q Consensus 81 VlDdv~~~~~l~~ 93 (180)
+||++....+|..
T Consensus 66 ~iDEiq~~~~~~~ 78 (128)
T PF13173_consen 66 FIDEIQYLPDWED 78 (128)
T ss_pred EEehhhhhccHHH
Confidence 9999988765543
No 33
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.68 E-value=0.00058 Score=54.14 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=62.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
++|+||||||+.+... .. .+ ...||..|-...-..-++.|+++-.. ...+.++|.+|
T Consensus 170 ppG~GKTtlArlia~t-sk--~~--SyrfvelSAt~a~t~dvR~ife~aq~------------------~~~l~krkTil 226 (554)
T KOG2028|consen 170 PPGTGKTTLARLIAST-SK--KH--SYRFVELSATNAKTNDVRDIFEQAQN------------------EKSLTKRKTIL 226 (554)
T ss_pred CCCCchHHHHHHHHhh-cC--CC--ceEEEEEeccccchHHHHHHHHHHHH------------------HHhhhcceeEE
Confidence 4899999999999988 22 21 26778777654444444555444310 11245788999
Q ss_pred EEeCCCCccccc---------cc--------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006 81 LLDDKWERVDLN---------KG--------------LFVCGLVEANKNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 81 VlDdv~~~~~l~---------~g--------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 124 (180)
.+|+|..-+... .| .-....++.-.++.|++|+.++-..++.+-
T Consensus 227 FiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 227 FIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred EeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 999987643221 13 001111122357889999999988888874
No 34
>PRK08118 topology modulation protein; Reviewed
Probab=97.67 E-value=9.7e-05 Score=52.65 Aligned_cols=29 Identities=31% Similarity=0.707 Sum_probs=23.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIW 29 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~w 29 (180)
++|+||||||+.+++.+....-+||..+|
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 48999999999999986433356787776
No 35
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.67 E-value=0.00028 Score=52.37 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=29.5
Q ss_pred eEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006 106 NFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI 147 (180)
Q Consensus 106 ~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L 147 (180)
..+++..+.+|-.++..+. .+.+|+++|.|-|--..-+-...
T Consensus 173 ~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 173 VLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred ecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 4578899999998888765 79999999999997555444444
No 36
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.62 E-value=0.0017 Score=52.81 Aligned_cols=118 Identities=22% Similarity=0.148 Sum_probs=68.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
.+|+|||.|++.+++... .... ..+++++ ..++...+...+... ..+. +.+.+++ .-+
T Consensus 144 ~~G~GKThL~~ai~~~l~--~~~~~~~v~yi~------~~~~~~~~~~~~~~~--------~~~~----~~~~~~~-~dl 202 (405)
T TIGR00362 144 GVGLGKTHLLHAIGNEIL--ENNPNAKVVYVS------SEKFTNDFVNALRNN--------KMEE----FKEKYRS-VDL 202 (405)
T ss_pred CCCCcHHHHHHHHHHHHH--HhCCCCcEEEEE------HHHHHHHHHHHHHcC--------CHHH----HHHHHHh-CCE
Confidence 379999999999999853 1221 2345553 334444555444211 1222 2333332 337
Q ss_pred EEEeCCCCcccc-----------cc----c------------------ccccccccccceEeecCCChhhhHHHHHHH--
Q 046006 80 LLLDDKWERVDL-----------NK----G------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK-- 124 (180)
Q Consensus 80 lVlDdv~~~~~l-----------~~----g------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-- 124 (180)
|+|||++....- +. | .++.+++.....+.+++.+.++-.+++.+.
T Consensus 203 LiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 203 LLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 888888753210 00 1 233344444457889999999999998887
Q ss_pred ---------HHHHHHHHcCCChHH
Q 046006 125 ---------LAQTVAKKCVGLPLA 139 (180)
Q Consensus 125 ---------~~~~i~~~c~g~PLa 139 (180)
....|++.+.|.+-.
T Consensus 283 ~~~~~l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HcCCCCCHHHHHHHHHhcCCCHHH
Confidence 556666666665543
No 37
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.0011 Score=54.36 Aligned_cols=104 Identities=26% Similarity=0.230 Sum_probs=61.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFD-CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
.+|+|||+|++.+++.+. +.+.. .++|++. .+++..+...+... +.+ ..++.++.+.-+
T Consensus 138 ~~G~GKTHLl~ai~~~l~--~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~----~f~~~~~~~~dv 197 (440)
T PRK14088 138 GVGLGKTHLLQSIGNYVV--QNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLN----EFREKYRKKVDV 197 (440)
T ss_pred CCCCcHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHH----HHHHHHHhcCCE
Confidence 379999999999999852 22233 3556643 45555665555221 122 233333344557
Q ss_pred EEEeCCCCcc-------cc----cc----c------------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006 80 LLLDDKWERV-------DL----NK----G------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 80 lVlDdv~~~~-------~l----~~----g------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 124 (180)
|++||+.... .+ +. | .++.+++....++++++.+.+.-.+++.+.
T Consensus 198 LlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 198 LLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred EEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHH
Confidence 8888887431 11 00 1 233344444457789999999888888877
No 38
>PRK07261 topology modulation protein; Provisional
Probab=97.57 E-value=0.00023 Score=50.91 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=20.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIW 29 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~w 29 (180)
++|+||||||+.+...+....-+.|...|
T Consensus 8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 8 YSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999998764222234465666
No 39
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.53 E-value=0.0015 Score=53.79 Aligned_cols=117 Identities=23% Similarity=0.175 Sum_probs=66.1
Q ss_pred CCCCcHHHHHHHHHcccccccCC-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTD-FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
.+|+|||+|++.+++... ..+ --.+++++. .++...+...+... ..+ .+.+.++ +.-+
T Consensus 156 ~~G~GKThL~~ai~~~~~--~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~----~~~~~~~-~~dl 214 (450)
T PRK00149 156 GVGLGKTHLLHAIGNYIL--EKNPNAKVVYVTS------EKFTNDFVNALRNN--------TME----EFKEKYR-SVDV 214 (450)
T ss_pred CCCCCHHHHHHHHHHHHH--HhCCCCeEEEEEH------HHHHHHHHHHHHcC--------cHH----HHHHHHh-cCCE
Confidence 379999999999999853 121 123445533 33444444444211 112 2233333 2347
Q ss_pred EEEeCCCCccc-----------ccc----c------------------ccccccccccceEeecCCChhhhHHHHHHH--
Q 046006 80 LLLDDKWERVD-----------LNK----G------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK-- 124 (180)
Q Consensus 80 lVlDdv~~~~~-----------l~~----g------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-- 124 (180)
|+|||++.... ++. | .++.+++....++++++.+.++-..++.+.
T Consensus 215 LiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 215 LLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred EEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence 77788864311 000 1 223444444467899999999999998887
Q ss_pred ---------HHHHHHHHcCCChH
Q 046006 125 ---------LAQTVAKKCVGLPL 138 (180)
Q Consensus 125 ---------~~~~i~~~c~g~PL 138 (180)
....|++.+.|..-
T Consensus 295 ~~~~~l~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 295 EEGIDLPDEVLEFIAKNITSNVR 317 (450)
T ss_pred HcCCCCCHHHHHHHHcCcCCCHH
Confidence 45556666655543
No 40
>PTZ00202 tuzin; Provisional
Probab=97.53 E-value=0.0028 Score=51.85 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=63.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-----C-
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-----S- 74 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-----~- 74 (180)
++|+|||||++.+.... + ...++++.. +..++++.|+.+||.+ .. ....++.+.+.+.+ .
T Consensus 294 ~~G~GKTTLlR~~~~~l----~--~~qL~vNpr---g~eElLr~LL~ALGV~-p~----~~k~dLLrqIqeaLl~~~~e~ 359 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRKE----G--MPAVFVDVR---GTEDTLRSVVKALGVP-NV----EACGDLLDFISEACRRAKKMN 359 (550)
T ss_pred CCCCCHHHHHHHHHhcC----C--ceEEEECCC---CHHHHHHHHHHHcCCC-Cc----ccHHHHHHHHHHHHHHHHHhC
Confidence 47999999999999874 2 123333333 6799999999999975 21 22234444444444 2
Q ss_pred CCcEEEEEeCCCCcccccc--c--------cccc--------ccc-------cccceEeecCCChhhhHHHHHHH
Q 046006 75 KKKFVLLLDDKWERVDLNK--G--------LFVC--------GLV-------EANKNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 75 ~k~~LlVlDdv~~~~~l~~--g--------~~~~--------~~~-------~~~~~~~l~~L~~~~a~~Lf~~~ 124 (180)
+++.+||+-= .+.+.+.. + .+.| ... .--.-|.+++++.++|.+.-.+.
T Consensus 360 GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 360 GETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred CCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 5666666542 22222222 1 0000 000 11145778889999988776655
No 41
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.51 E-value=0.00035 Score=52.55 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEe
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVV 32 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~ 32 (180)
+|+|||+|...+..... ..|+.++.++-
T Consensus 22 sGSGKT~li~~lL~~~~---~~f~~I~l~t~ 49 (241)
T PF04665_consen 22 SGSGKTTLIKSLLYYLR---HKFDHIFLITP 49 (241)
T ss_pred CCCCHHHHHHHHHHhhc---ccCCEEEEEec
Confidence 79999999999988754 78877777654
No 42
>PRK04195 replication factor C large subunit; Provisional
Probab=97.51 E-value=0.0048 Score=51.35 Aligned_cols=36 Identities=14% Similarity=0.106 Sum_probs=27.7
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..+.+++++.++....+.+. ....|++.++|-.-.+
T Consensus 153 ~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 153 LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSA 199 (482)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 56788999999888887765 6788888888755443
No 43
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.49 E-value=0.002 Score=48.45 Aligned_cols=53 Identities=13% Similarity=0.131 Sum_probs=38.5
Q ss_pred ccccccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006 95 LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI 147 (180)
Q Consensus 95 ~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L 147 (180)
.++.+++....++++++++.++-.+++.++ ...-|++.+.|..-.+..+-..|
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 445556666678999999999999998875 67778888887766554444333
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.48 E-value=0.00019 Score=48.46 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||++|+.+++.+
T Consensus 6 ~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYL 22 (132)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred cCCCCeeHHHHHHHhhc
Confidence 48999999999999995
No 45
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.46 E-value=0.0019 Score=53.79 Aligned_cols=20 Identities=10% Similarity=0.190 Sum_probs=17.8
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
..++++..+.++..++|..+
T Consensus 358 ~~I~~~~Pd~e~r~~Il~~~ 377 (512)
T TIGR03689 358 VKIRIERPDAEAAADIFSKY 377 (512)
T ss_pred eEEEeCCCCHHHHHHHHHHH
Confidence 46889999999999999887
No 46
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.45 E-value=0.0027 Score=55.96 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=30.4
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..+++++|+.++..+.+.+. .+..|++.++|.|--+
T Consensus 171 q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 171 LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 57899999999999988884 6788999999988533
No 47
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.45 E-value=0.00042 Score=49.57 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
.+|+|||+|.++++....
T Consensus 32 ~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 32 ESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp -TTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998864
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.41 E-value=0.0013 Score=48.76 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=33.6
Q ss_pred cceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHH
Q 046006 104 NKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRA 146 (180)
Q Consensus 104 ~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~ 146 (180)
...+++++++.++...++... ....|++.+.|.|..+..+-..
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 357899999999999988865 6778888888888877655433
No 49
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.41 E-value=0.002 Score=46.59 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=28.1
Q ss_pred ceEeecCCChhhhHHHHHHH-----HHHHHHHHcCCChH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----LAQTVAKKCVGLPL 138 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----~~~~i~~~c~g~PL 138 (180)
..+++.+++.++..+.+.+. .+..|++.++|.|.
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~gi~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQGISEEAAELLLALAGGSPG 186 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcc
Confidence 57899999999998888776 67788888888775
No 50
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.39 E-value=0.0012 Score=49.20 Aligned_cols=48 Identities=15% Similarity=0.119 Sum_probs=36.4
Q ss_pred cccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006 100 LVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI 147 (180)
Q Consensus 100 ~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L 147 (180)
.+.....+++++++.++-..++.+. ....+++.+.|.+..+..+-..|
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 3333468899999998877777764 67788888999998877666555
No 51
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0046 Score=51.64 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=30.3
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..+++.+++.++..+.+.+. ....|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 57899999999999998875 6778999999988544
No 52
>PRK08116 hypothetical protein; Validated
Probab=97.37 E-value=0.00065 Score=52.16 Aligned_cols=67 Identities=25% Similarity=0.296 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL 81 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV 81 (180)
+|+|||.||.++++.+. .. ...+++++ ..+++..+...+... ...+ ...+.+.+.+-. |||
T Consensus 123 ~GtGKThLa~aia~~l~--~~-~~~v~~~~------~~~ll~~i~~~~~~~-----~~~~----~~~~~~~l~~~d-lLv 183 (268)
T PRK08116 123 VGTGKTYLAACIANELI--EK-GVPVIFVN------FPQLLNRIKSTYKSS-----GKED----ENEIIRSLVNAD-LLI 183 (268)
T ss_pred CCCCHHHHHHHHHHHHH--Hc-CCeEEEEE------HHHHHHHHHHHHhcc-----cccc----HHHHHHHhcCCC-EEE
Confidence 69999999999999863 22 23455654 445666665554321 1111 222344455444 899
Q ss_pred EeCCCC
Q 046006 82 LDDKWE 87 (180)
Q Consensus 82 lDdv~~ 87 (180)
|||+..
T Consensus 184 iDDlg~ 189 (268)
T PRK08116 184 LDDLGA 189 (268)
T ss_pred EecccC
Confidence 999953
No 53
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.36 E-value=0.0049 Score=50.72 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=58.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
.+|+|||+|++.+++.+.. .. -.+++++ ...+...+...+... . ...+++.++ ..-+|
T Consensus 149 ~~G~GKTHLl~Ai~~~l~~--~~-~~v~yi~------~~~f~~~~~~~l~~~--------~----~~~f~~~~~-~~dvL 206 (445)
T PRK12422 149 PEGSGKTHLMQAAVHALRE--SG-GKILYVR------SELFTEHLVSAIRSG--------E----MQRFRQFYR-NVDAL 206 (445)
T ss_pred CCCCCHHHHHHHHHHHHHH--cC-CCEEEee------HHHHHHHHHHHHhcc--------h----HHHHHHHcc-cCCEE
Confidence 4799999999999998531 22 2344553 334444444444211 1 122333333 33477
Q ss_pred EEeCCCCcccc-----------c----cc------------------ccccccccccceEeecCCChhhhHHHHHHH
Q 046006 81 LLDDKWERVDL-----------N----KG------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 81 VlDdv~~~~~l-----------~----~g------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 124 (180)
++||+.....- + .| .++.+++....++++++++.++-..++.++
T Consensus 207 iIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 207 FIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred EEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 77887654210 0 01 333444444568889999999999988876
No 54
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.35 E-value=0.0011 Score=58.24 Aligned_cols=121 Identities=12% Similarity=0.045 Sum_probs=73.6
Q ss_pred CCCCcHHHHHHHHHccccccc--CCCC--eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--
Q 046006 1 MGGVGKTTLLTHINNKFLVSS--TDFD--CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-- 74 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~--~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-- 74 (180)
++|+|||+.++.+...+.... .... .+++|+...-.+...++..|.+++... . .....+..+....+...+.
T Consensus 789 ~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~-~-P~~GlsS~evLerLF~~L~k~ 866 (1164)
T PTZ00112 789 MPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNK-K-PPNALNSFKILDRLFNQNKKD 866 (1164)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCC-C-CCccccHHHHHHHHHhhhhcc
Confidence 489999999999988763211 1122 256677666678888999999888443 1 1222233445555555542
Q ss_pred -CCcEEEEEeCCCCccc-----c------cc--c-------------------ccccccccccceEeecCCChhhhHHHH
Q 046006 75 -KKKFVLLLDDKWERVD-----L------NK--G-------------------LFVCGLVEANKNFKVECLSDNDAWELL 121 (180)
Q Consensus 75 -~k~~LlVlDdv~~~~~-----l------~~--g-------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf 121 (180)
....+||||+++.... + .. + .++.+++.. ..+..+|++.++-.+++
T Consensus 867 ~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dIL 945 (1164)
T PTZ00112 867 NRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKII 945 (1164)
T ss_pred cccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHH
Confidence 2346999999986531 1 00 1 111122221 23566888999998888
Q ss_pred HHH
Q 046006 122 RQK 124 (180)
Q Consensus 122 ~~~ 124 (180)
..+
T Consensus 946 k~R 948 (1164)
T PTZ00112 946 KER 948 (1164)
T ss_pred HHH
Confidence 877
No 55
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.35 E-value=0.00072 Score=58.65 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=24.4
Q ss_pred ceEeecCCChhhhHHHHHHH------------------HHHHHHHHcCCC
Q 046006 105 KNFKVECLSDNDAWELLRQK------------------LAQTVAKKCVGL 136 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~------------------~~~~i~~~c~g~ 136 (180)
..+.+++|+.++...++.+. ....|++.+.|.
T Consensus 161 ~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 161 RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 47889999999999888764 456667777664
No 56
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.35 E-value=0.0049 Score=51.45 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=29.6
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..+++++++.++..+.+.+. ....|++.++|.+--+
T Consensus 180 ~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 180 QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 46889999999999998876 5778999999987443
No 57
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.0024 Score=54.53 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=29.6
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI 141 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~ 141 (180)
..+.++.++.++..+.+.+. ..+.|++.++|.|....
T Consensus 176 q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 176 LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 57889999999999888764 45778999999986443
No 58
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.0034 Score=50.09 Aligned_cols=77 Identities=12% Similarity=0.128 Sum_probs=50.4
Q ss_pred HHHHHHHhC-----CCcEEEEEeCCCCccc---------ccc--c-----------ccccc-cccccceEeecCCChhhh
Q 046006 66 ALEIFRFLS-----KKKFVLLLDDKWERVD---------LNK--G-----------LFVCG-LVEANKNFKVECLSDNDA 117 (180)
Q Consensus 66 ~~~l~~~L~-----~k~~LlVlDdv~~~~~---------l~~--g-----------~~~~~-~~~~~~~~~l~~L~~~~a 117 (180)
++.+.+++. +++-++|+|+++..+. ++. + ..+.. ..+....+.+.+++.++.
T Consensus 126 iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~ 205 (351)
T PRK09112 126 IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDEL 205 (351)
T ss_pred HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHH
Confidence 345555553 5677999999998742 111 1 11111 111225889999999999
Q ss_pred HHHHHHH---------HHHHHHHHcCCChHHHHH
Q 046006 118 WELLRQK---------LAQTVAKKCVGLPLALIT 142 (180)
Q Consensus 118 ~~Lf~~~---------~~~~i~~~c~g~PLal~~ 142 (180)
.+++.+. ....+++.++|.|.....
T Consensus 206 ~~~L~~~~~~~~~~~~~~~~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 206 KKALSHLGSSQGSDGEITEALLQRSKGSVRKALL 239 (351)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHcCCCHHHHHH
Confidence 9999874 356889999999975543
No 59
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.26 E-value=0.00076 Score=53.57 Aligned_cols=86 Identities=21% Similarity=0.260 Sum_probs=59.5
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC--CC--cChHHHHHHHHH--HhC-
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSW--KN--KNSEEKALEIFR--FLS- 74 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~--~~--~~~~~~~~~l~~--~L~- 74 (180)
.|.|||.+.+++++... -..+|++.-+.++...++..|+.+.+..+.... .. ....+....+.+ ...
T Consensus 39 sgTGKT~~~r~~l~~~n------~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~ 112 (438)
T KOG2543|consen 39 SGTGKTYLVRQLLRKLN------LENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATN 112 (438)
T ss_pred CCCchhHHHHHHHhhcC------CcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhc
Confidence 59999999999999851 236899999999999999999999953211111 11 222333344444 222
Q ss_pred -CCcEEEEEeCCCCcccccc
Q 046006 75 -KKKFVLLLDDKWERVDLNK 93 (180)
Q Consensus 75 -~k~~LlVlDdv~~~~~l~~ 93 (180)
++.++|||||++...+.++
T Consensus 113 ~d~~~~liLDnad~lrD~~a 132 (438)
T KOG2543|consen 113 RDQKVFLILDNADALRDMDA 132 (438)
T ss_pred cCceEEEEEcCHHhhhccch
Confidence 4589999999998766554
No 60
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.26 E-value=0.0066 Score=48.66 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=29.3
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..+++.+++.++..+.+.+. .+..|++.++|.|-.+
T Consensus 171 ~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 171 LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 57899999999999888764 5677899999988633
No 61
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.015 Score=45.62 Aligned_cols=131 Identities=15% Similarity=0.175 Sum_probs=70.3
Q ss_pred CCCCcHHHHHHHHHcccc---cccCCCCeEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCCC-------C-CcChHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFL---VSSTDFDCVIWIV-VSKDLQLEKIQEIVGKKVGLLDGDSW-------K-NKNSEEKALE 68 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~---~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~~~~~~-------~-~~~~~~~~~~ 68 (180)
+.|+||||+|+.++..+- ....|+|...|.. -+......+ .+++.+.+...+.... . ..-.......
T Consensus 34 ~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~na 112 (313)
T PRK05564 34 EDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNA 112 (313)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHHHHhcCcccCCceEEEEechhhcCHHHHHH
Confidence 469999999999987541 1235677666655 344445555 3445554432200000 0 0011223444
Q ss_pred HHHHhCC---C-cEEEEEeCCCCcccccccccccccccccceEeecCCChhhhHHHHHHH-------HHHHHHHHcCCCh
Q 046006 69 IFRFLSK---K-KFVLLLDDKWERVDLNKGLFVCGLVEANKNFKVECLSDNDAWELLRQK-------LAQTVAKKCVGLP 137 (180)
Q Consensus 69 l~~~L~~---k-~~LlVlDdv~~~~~l~~g~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-------~~~~i~~~c~g~P 137 (180)
+.+.|++ . .++++-++.... ..+-.+....+.+.++++++....+.+. .+..++..++|.|
T Consensus 113 LLK~LEepp~~t~~il~~~~~~~l--------l~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~ 184 (313)
T PRK05564 113 FLKTIEEPPKGVFIILLCENLEQI--------LDTIKSRCQIYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGIP 184 (313)
T ss_pred HHHHhcCCCCCeEEEEEeCChHhC--------cHHHHhhceeeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCH
Confidence 5555542 1 122222332111 0011122257889999999998888754 4567889999988
Q ss_pred HHH
Q 046006 138 LAL 140 (180)
Q Consensus 138 Lal 140 (180)
.-+
T Consensus 185 ~~a 187 (313)
T PRK05564 185 GKV 187 (313)
T ss_pred HHH
Confidence 644
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=97.22 E-value=0.0023 Score=50.36 Aligned_cols=34 Identities=15% Similarity=0.012 Sum_probs=27.6
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL 138 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL 138 (180)
..+++++++.++-.+.+... ....|++.++|-.-
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMR 195 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 46889999999988887765 67888999988653
No 63
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.21 E-value=0.0061 Score=52.93 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=30.6
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCCh-HHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLP-LALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~P-Lal~~~ 143 (180)
..+.+++++.++..+.+.+. ....|++.++|.. -++.++
T Consensus 171 q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 171 LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 57889999999999888875 5678889998865 455543
No 64
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.21 E-value=0.00099 Score=49.59 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=45.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH----hCCCCCCCCCCcChH---HHHHHHHHHh
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK----VGLLDGDSWKNKNSE---EKALEIFRFL 73 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~~---~~~~~l~~~L 73 (180)
.+|+|||++|.+++.... ..-..++|++.. .++...+. ++... +... .......+.+ +..+.+.+.+
T Consensus 31 ~~GsGKT~l~~~la~~~~---~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~ 104 (225)
T PRK09361 31 PPGSGKTNICLQLAVEAA---KNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSN-IIIFEPSSFEEQSEAIRKAEKLA 104 (225)
T ss_pred CCCCCHHHHHHHHHHHHH---HCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhC-eEEEeCCCHHHHHHHHHHHHHHH
Confidence 489999999999988742 233567888876 45544432 22222 1000 0001122332 3344445555
Q ss_pred CCCcEEEEEeCCCC
Q 046006 74 SKKKFVLLLDDKWE 87 (180)
Q Consensus 74 ~~k~~LlVlDdv~~ 87 (180)
..+.-++|+|.+..
T Consensus 105 ~~~~~lvVIDsi~a 118 (225)
T PRK09361 105 KENVGLIVLDSATS 118 (225)
T ss_pred HhcccEEEEeCcHH
Confidence 56778999999854
No 65
>PRK05642 DNA replication initiation factor; Validated
Probab=97.20 E-value=0.0075 Score=45.36 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=37.1
Q ss_pred ccccccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006 95 LFVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI 147 (180)
Q Consensus 95 ~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L 147 (180)
.++.+++....++++++++.++-.+++..+ ...-|++.+.|..-.+..+-..|
T Consensus 149 ~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 149 PDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred ccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 344455555578899999999999998855 66777788887765554444333
No 66
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.0062 Score=52.24 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
.|+|||+||+.+++.++ +++.-.+.+++.+.
T Consensus 440 ~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~ 470 (952)
T KOG0735|consen 440 KGSGKTNLVKALFDYYS--KDLIAHVEIVSCST 470 (952)
T ss_pred CCCCHhHHHHHHHHHhc--cccceEEEEEechh
Confidence 69999999999999964 44444455565443
No 67
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0043 Score=53.11 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=29.4
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..+++++++.++..+.+.+. ....|++.++|.+-.+
T Consensus 170 q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 170 LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 57889999999999888765 6778999999977444
No 68
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.16 E-value=0.0076 Score=51.25 Aligned_cols=29 Identities=17% Similarity=-0.008 Sum_probs=22.3
Q ss_pred cccccccccceEeecCCChhhhHHHHHHH
Q 046006 96 FVCGLVEANKNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 96 ~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 124 (180)
++.+++...-++++++.+.+.-.+++.++
T Consensus 430 rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 430 RLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred HHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 34455555568899999999999998877
No 69
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.16 E-value=0.0037 Score=50.06 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=27.0
Q ss_pred cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
+..+.++..+.++..++|..+ ....+++.+.|..
T Consensus 285 d~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~s 328 (364)
T TIGR01242 285 DRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGAS 328 (364)
T ss_pred ceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCC
Confidence 356788999999999999887 4667888887764
No 70
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.0072 Score=48.96 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=29.6
Q ss_pred ceEeecCCChhhhHHHHHHH------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~------~~~~i~~~c~g~PLal 140 (180)
..+.+++++.++..+.+.+. .+..++..++|.|...
T Consensus 169 ~~i~f~~~~~~~i~~~L~~~~~~~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 169 RHVALRTPSVEAVAEVLVRRDGVDPETARRAARASQGHIGRA 210 (394)
T ss_pred eEEECCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHH
Confidence 57889999999999888754 5667899999998644
No 71
>PRK09087 hypothetical protein; Validated
Probab=97.12 E-value=0.0076 Score=45.09 Aligned_cols=52 Identities=10% Similarity=-0.035 Sum_probs=39.3
Q ss_pred cccccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006 96 FVCGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI 147 (180)
Q Consensus 96 ~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L 147 (180)
++.+++....++++++++.++-.+++.++ ...-|++.+.|..-++..+-..|
T Consensus 137 dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 137 DLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred cHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34455556678999999999999999987 67788888888877766544444
No 72
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.11 E-value=0.0039 Score=46.29 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=49.5
Q ss_pred CCCCcHHHHHHHHHcccccccCC-----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCCCcChHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTD-----FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG------DSWKNKNSEEKALEI 69 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~~l 69 (180)
.+|+|||+||.+++.... ... =..++|++....++...+ ..+.+..+.... .-....+.++....+
T Consensus 27 ~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 103 (226)
T cd01393 27 EFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARPYNGEQQLEIV 103 (226)
T ss_pred CCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeCCCHHHHHHHH
Confidence 379999999999987631 121 156789887776665444 344444322100 001223455665555
Q ss_pred HHHhC----CCcEEEEEeCCCCc
Q 046006 70 FRFLS----KKKFVLLLDDKWER 88 (180)
Q Consensus 70 ~~~L~----~k~~LlVlDdv~~~ 88 (180)
.+... .+.-|+|+|.+...
T Consensus 104 ~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 104 EELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred HHHHHHhhcCCeeEEEEcCcchh
Confidence 55543 45669999998554
No 73
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.08 E-value=0.0019 Score=48.23 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=48.4
Q ss_pred CCCCcHHHHHHHHHcccccccCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcC---hHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTD----FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKN---SEEKAL 67 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~---~~~~~~ 67 (180)
.+|+|||+||.+++... ..... ...++|++....++...+ .++++..+..... .....+ ......
T Consensus 27 ~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~l~ 104 (235)
T cd01123 27 EFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSDHQLQLLE 104 (235)
T ss_pred CCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHHHHHHHHH
Confidence 37999999999997552 11121 367899988776665444 3344443322000 001122 233345
Q ss_pred HHHHHhC-C-CcEEEEEeCCCC
Q 046006 68 EIFRFLS-K-KKFVLLLDDKWE 87 (180)
Q Consensus 68 ~l~~~L~-~-k~~LlVlDdv~~ 87 (180)
.+.+.+. . +.-|+|+|.+..
T Consensus 105 ~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 105 ELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHhhcCCeeEEEEeCcHH
Confidence 5555553 4 678999999864
No 74
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.08 E-value=0.0031 Score=46.36 Aligned_cols=82 Identities=13% Similarity=0.126 Sum_probs=46.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh-CC--CCCCCCCCcC---hHHHHHHHHHHhC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKV-GL--LDGDSWKNKN---SEEKALEIFRFLS 74 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-~~--~~~~~~~~~~---~~~~~~~l~~~L~ 74 (180)
.+|+|||++|.+++.... .....++|++... ++...+.+. ++.. .. ..-......+ .......+.+.+.
T Consensus 20 ~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 94 (209)
T TIGR02237 20 PPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAIQKTSKFID 94 (209)
T ss_pred CCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 489999999999987742 2346788998765 555554432 2221 00 0000011122 2333555555554
Q ss_pred C-CcEEEEEeCCCC
Q 046006 75 K-KKFVLLLDDKWE 87 (180)
Q Consensus 75 ~-k~~LlVlDdv~~ 87 (180)
. +.-++|+|.+..
T Consensus 95 ~~~~~lvVIDSis~ 108 (209)
T TIGR02237 95 RDSASLVVVDSFTA 108 (209)
T ss_pred hcCccEEEEeCcHH
Confidence 3 567999999754
No 75
>PRK12377 putative replication protein; Provisional
Probab=97.07 E-value=0.0021 Score=48.72 Aligned_cols=66 Identities=24% Similarity=0.268 Sum_probs=38.3
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL 81 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV 81 (180)
+|+|||.||..+++.+. .....++++++ .+++..+-...... .+.. .+.+.+ .+.=|||
T Consensus 110 ~GtGKThLa~AIa~~l~---~~g~~v~~i~~------~~l~~~l~~~~~~~-------~~~~----~~l~~l-~~~dLLi 168 (248)
T PRK12377 110 PGTGKNHLAAAIGNRLL---AKGRSVIVVTV------PDVMSRLHESYDNG-------QSGE----KFLQEL-CKVDLLV 168 (248)
T ss_pred CCCCHHHHHHHHHHHHH---HcCCCeEEEEH------HHHHHHHHHHHhcc-------chHH----HHHHHh-cCCCEEE
Confidence 79999999999999863 22233456543 35555554443211 1112 222233 3556999
Q ss_pred EeCCCCc
Q 046006 82 LDDKWER 88 (180)
Q Consensus 82 lDdv~~~ 88 (180)
|||+...
T Consensus 169 IDDlg~~ 175 (248)
T PRK12377 169 LDEIGIQ 175 (248)
T ss_pred EcCCCCC
Confidence 9999543
No 76
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.013 Score=49.36 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=29.9
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~ 143 (180)
..+++.+++.++-.+.+.+. ....|++.++|.+- |+..+
T Consensus 171 ~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 171 IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 57899999999988777764 56888999999664 44444
No 77
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0043 Score=51.24 Aligned_cols=35 Identities=14% Similarity=-0.042 Sum_probs=28.8
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLA 139 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLa 139 (180)
..+.+.+++.++-.+.+.+. ....|++.++|.+--
T Consensus 173 q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 173 QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHH
Confidence 46899999999888888776 678899999998743
No 78
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.00 E-value=0.0024 Score=49.04 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIF 70 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~ 70 (180)
+|+|||+|++.++++.. .+| +.++++-+++.. ...++.+.+...=..+.. ......+.. ...-.+.
T Consensus 78 ~G~GKTtLa~~i~~~i~---~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~A 154 (274)
T cd01133 78 AGVGKTVLIMELINNIA---KAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALTGLTMA 154 (274)
T ss_pred CCCChhHHHHHHHHHHH---hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 69999999999999853 334 455566677655 455566665543111100 011111111 1223355
Q ss_pred HHh--C-CCcEEEEEeCCCCc
Q 046006 71 RFL--S-KKKFVLLLDDKWER 88 (180)
Q Consensus 71 ~~L--~-~k~~LlVlDdv~~~ 88 (180)
+++ + ++.+|+++||+-..
T Consensus 155 Eyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 155 EYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHhcCCeEEEEEeChhHH
Confidence 555 3 88999999998654
No 79
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.98 E-value=0.0085 Score=48.52 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=25.6
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCC
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGL 136 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~ 136 (180)
..+.+++.+.++-.++|..+ ....+++.+.|.
T Consensus 295 ~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~ 336 (389)
T PRK03992 295 RIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGA 336 (389)
T ss_pred eEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCC
Confidence 46889999999999999877 456777777664
No 80
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.95 E-value=0.0041 Score=46.03 Aligned_cols=82 Identities=13% Similarity=0.031 Sum_probs=43.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH----hCCCCCCCCCCcChHH---HHHHHHHHh
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK----VGLLDGDSWKNKNSEE---KALEIFRFL 73 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~----l~~~~~~~~~~~~~~~---~~~~l~~~L 73 (180)
.+|+||||+|.+++.... ..-..++|++....+. +-+.++... +... -......+..+ ....+...+
T Consensus 27 ~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 100 (218)
T cd01394 27 PPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS--ERFRQIAGDRPERAASS-IIVFEPMDFNEQGRAIQETETFA 100 (218)
T ss_pred CCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH--HHHHHHHhHChHhhhcC-EEEEeCCCHHHHHHHHHHHHHHH
Confidence 389999999999987742 2233567776554443 333333322 1110 00011222223 233455555
Q ss_pred CCCcEEEEEeCCCCc
Q 046006 74 SKKKFVLLLDDKWER 88 (180)
Q Consensus 74 ~~k~~LlVlDdv~~~ 88 (180)
+.+.-++|+|.+...
T Consensus 101 ~~~~~lvvIDsi~~l 115 (218)
T cd01394 101 DEKVDLVVVDSATAL 115 (218)
T ss_pred hcCCcEEEEechHHh
Confidence 555779999997543
No 81
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0038 Score=49.34 Aligned_cols=63 Identities=21% Similarity=0.184 Sum_probs=37.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~L 79 (180)
+||.|||-||++++++-. .-|+.+.. .++.+..-. ....+.+.+.+.-+ +.+++
T Consensus 193 PPGTGKTLLAkAVA~~T~--------AtFIrvvg--------SElVqKYiG---------EGaRlVRelF~lArekaPsI 247 (406)
T COG1222 193 PPGTGKTLLAKAVANQTD--------ATFIRVVG--------SELVQKYIG---------EGARLVRELFELAREKAPSI 247 (406)
T ss_pred CCCCcHHHHHHHHHhccC--------ceEEEecc--------HHHHHHHhc---------cchHHHHHHHHHHhhcCCeE
Confidence 589999999999999831 22333321 122222211 12234444444444 56899
Q ss_pred EEEeCCCCc
Q 046006 80 LLLDDKWER 88 (180)
Q Consensus 80 lVlDdv~~~ 88 (180)
+.+|.++..
T Consensus 248 IFiDEIDAI 256 (406)
T COG1222 248 IFIDEIDAI 256 (406)
T ss_pred EEEechhhh
Confidence 999998864
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.012 Score=50.51 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=29.6
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..+.+.+++.++..+.+.+. ....|++.++|.+--+
T Consensus 171 ~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDA 217 (647)
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 57899999999999888864 5678999999987633
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.01 Score=49.20 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=32.2
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCC-ChHHHHHHHHHh
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVG-LPLALITIGRAI 147 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g-~PLal~~~~~~L 147 (180)
..+++.+++.++-...+.+. ....|++.++| ++.++..+-...
T Consensus 169 ~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 169 QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 57889999999988888775 57788887765 567776665533
No 84
>COG3899 Predicted ATPase [General function prediction only]
Probab=96.87 E-value=0.022 Score=50.67 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=40.7
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCChHHHHHHHHHhcC
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLPLALITIGRAIAC 149 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~PLal~~~~~~L~~ 149 (180)
..+.|.||+..+...+.... ..+.|.++..|.|+-+..+-..|..
T Consensus 212 ~~I~L~PL~~~d~~~lV~~~l~~~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 212 TTITLAPLSRADTNQLVAATLGCTKLLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred eEEecCcCchhhHHHHHHHHhCCcccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 67899999999999998887 7899999999999999988888765
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.018 Score=47.94 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=29.0
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..+++.+++.++-.+.+.+. ....|++.++|.+-.+
T Consensus 168 ~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 168 QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 56888999999988888875 6778899999987543
No 86
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.85 E-value=0.0034 Score=44.71 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=40.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHH-HHHHHHhCCCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKA-LEIFRFLSKKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~l~~~L~~k~~ 78 (180)
++|+||||+++.++..+.. ..+ .++.++... .....+.+...++..+.+-.......+..+.. +.+.....+..-
T Consensus 8 ~~G~GKTt~~~~la~~~~~--~g~-~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 84 (173)
T cd03115 8 LQGVGKTTTAAKLALYLKK--KGK-KVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFD 84 (173)
T ss_pred CCCCCHHHHHHHHHHHHHH--CCC-cEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence 5899999999999887531 222 233344332 22333344444444443201111223344433 334444444444
Q ss_pred EEEEeCCCCc
Q 046006 79 VLLLDDKWER 88 (180)
Q Consensus 79 LlVlDdv~~~ 88 (180)
++|+|..-..
T Consensus 85 ~viiDt~g~~ 94 (173)
T cd03115 85 VVIVDTAGRL 94 (173)
T ss_pred EEEEECcccc
Confidence 5667775543
No 87
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.85 E-value=0.0037 Score=47.30 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=39.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL 81 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV 81 (180)
+|+|||+||..+++.+. ..-..++++ +..+++..+-...... ..+.+ .+.+.+. +.=+||
T Consensus 108 ~GtGKThLa~aia~~l~---~~g~~v~~i------t~~~l~~~l~~~~~~~------~~~~~----~~l~~l~-~~dlLv 167 (244)
T PRK07952 108 PGTGKNHLAAAICNELL---LRGKSVLII------TVADIMSAMKDTFSNS------ETSEE----QLLNDLS-NVDLLV 167 (244)
T ss_pred CCCCHHHHHHHHHHHHH---hcCCeEEEE------EHHHHHHHHHHHHhhc------cccHH----HHHHHhc-cCCEEE
Confidence 79999999999999863 222344555 3445555544433211 11222 2333454 345888
Q ss_pred EeCCCCcc
Q 046006 82 LDDKWERV 89 (180)
Q Consensus 82 lDdv~~~~ 89 (180)
+||+....
T Consensus 168 IDDig~~~ 175 (244)
T PRK07952 168 IDEIGVQT 175 (244)
T ss_pred EeCCCCCC
Confidence 99996653
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.84 E-value=0.012 Score=50.72 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=29.2
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI 141 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~ 141 (180)
..+.+++++.++..+.+.+. ....|++.++|.+.-+.
T Consensus 171 ~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 171 LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHH
Confidence 45678899999998888766 57899999999885443
No 89
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.83 E-value=0.013 Score=40.59 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=23.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL 36 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~ 36 (180)
.+|+|||+++..++.... ..-..++|++.....
T Consensus 7 ~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~e~~~ 39 (165)
T cd01120 7 PTGSGKTTLALQLALNIA---TKGGKVVYVDIEEEI 39 (165)
T ss_pred CCCCCHHHHHHHHHHHHH---hcCCEEEEEECCcch
Confidence 379999999999988853 233456777765544
No 90
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.80 E-value=0.017 Score=48.62 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=26.9
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL 138 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL 138 (180)
..+++++++.++..+.+.+. ....|++.++|.+-
T Consensus 171 ~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 171 LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMR 215 (527)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 46788899999888777664 56788899999775
No 91
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.77 E-value=0.0041 Score=47.37 Aligned_cols=66 Identities=26% Similarity=0.305 Sum_probs=39.8
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL 81 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV 81 (180)
+|+|||.||.++.+... +..+. +.++ +..+++.++....... .....+.+.+. +-=|||
T Consensus 114 ~G~GKThLa~Ai~~~l~--~~g~s-v~f~------~~~el~~~Lk~~~~~~-----------~~~~~l~~~l~-~~dlLI 172 (254)
T COG1484 114 PGVGKTHLAIAIGNELL--KAGIS-VLFI------TAPDLLSKLKAAFDEG-----------RLEEKLLRELK-KVDLLI 172 (254)
T ss_pred CCCcHHHHHHHHHHHHH--HcCCe-EEEE------EHHHHHHHHHHHHhcC-----------chHHHHHHHhh-cCCEEE
Confidence 79999999999999963 33333 4444 5556777776655321 11122222222 233899
Q ss_pred EeCCCCc
Q 046006 82 LDDKWER 88 (180)
Q Consensus 82 lDdv~~~ 88 (180)
|||+-..
T Consensus 173 iDDlG~~ 179 (254)
T COG1484 173 IDDIGYE 179 (254)
T ss_pred EecccCc
Confidence 9998664
No 92
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.76 E-value=0.016 Score=46.50 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=50.6
Q ss_pred HHHHHHHhC-----CCcEEEEEeCCCCcccc---------cc--c-----------cccccc-ccccceEeecCCChhhh
Q 046006 66 ALEIFRFLS-----KKKFVLLLDDKWERVDL---------NK--G-----------LFVCGL-VEANKNFKVECLSDNDA 117 (180)
Q Consensus 66 ~~~l~~~L~-----~k~~LlVlDdv~~~~~l---------~~--g-----------~~~~~~-~~~~~~~~l~~L~~~~a 117 (180)
++.+.+.+. +++-++|+||++..+.- +. + ..+... .+....+.+.+++.++.
T Consensus 126 iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i 205 (365)
T PRK07471 126 VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDV 205 (365)
T ss_pred HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHH
Confidence 445555553 56779999999876421 11 1 111111 12235789999999999
Q ss_pred HHHHHHH-------HHHHHHHHcCCChHHHHHH
Q 046006 118 WELLRQK-------LAQTVAKKCVGLPLALITI 143 (180)
Q Consensus 118 ~~Lf~~~-------~~~~i~~~c~g~PLal~~~ 143 (180)
.+++.+. ....++..++|.|+....+
T Consensus 206 ~~~L~~~~~~~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 206 IDALAAAGPDLPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred HHHHHHhcccCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999987 2257899999999855433
No 93
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.019 Score=49.14 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=30.2
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALIT 142 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~ 142 (180)
..+++++++.++..+.+.+. ....|++.++|.+--+..
T Consensus 176 ~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 176 LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 57899999999998888765 578889999997754433
No 94
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.74 E-value=0.023 Score=46.18 Aligned_cols=33 Identities=0% Similarity=-0.009 Sum_probs=24.2
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
..+.++..+.++..++|..+ ...++++.+.|+-
T Consensus 309 ~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~s 351 (398)
T PTZ00454 309 RKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKIS 351 (398)
T ss_pred EEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCC
Confidence 45788888888888888766 4567777776653
No 95
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.034 Score=45.59 Aligned_cols=119 Identities=16% Similarity=0.127 Sum_probs=73.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCC--CcEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSK--KKFV 79 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~--k~~L 79 (180)
+|.|||.+...++.+...-... -.++.++.-+-....+++..|+..+... . .......+..+.+.++... +.+|
T Consensus 184 PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~~~~~q~-~--~s~~~~~~~~~~~~~h~~q~k~~~l 259 (529)
T KOG2227|consen 184 PGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIFSSLLQD-L--VSPGTGMQHLEKFEKHTKQSKFMLL 259 (529)
T ss_pred CCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHHHHHHHH-h--cCCchhHHHHHHHHHHHhcccceEE
Confidence 7999999999999886321122 2346666555456667777777666211 0 0111225666777777753 3799
Q ss_pred EEEeCCCCcc-----------cccc---------c--------ccccccccc-----cceEeecCCChhhhHHHHHHH
Q 046006 80 LLLDDKWERV-----------DLNK---------G--------LFVCGLVEA-----NKNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 80 lVlDdv~~~~-----------~l~~---------g--------~~~~~~~~~-----~~~~~l~~L~~~~a~~Lf~~~ 124 (180)
+|+|+.+... +|.. | .+....... -..+..+|.+.++-.++|..+
T Consensus 260 lVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~r 337 (529)
T KOG2227|consen 260 LVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQR 337 (529)
T ss_pred EEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHH
Confidence 9999988642 2222 2 111111111 256788899999999999998
No 96
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.69 E-value=0.0029 Score=45.25 Aligned_cols=27 Identities=26% Similarity=0.578 Sum_probs=20.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWI 30 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv 30 (180)
++|+||||+|+.++..+. ..+...+++
T Consensus 15 ~~GsGKst~a~~l~~~l~---~~~~~~~~~ 41 (176)
T PRK05541 15 LAGSGKTTIAKALYERLK---LKYSNVIYL 41 (176)
T ss_pred CCCCCHHHHHHHHHHHHH---HcCCcEEEE
Confidence 579999999999998863 445555555
No 97
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.005 Score=49.54 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=46.9
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCcChHHHHHHHHHHhCCCcE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS---WKNKNSEEKALEIFRFLSKKKF 78 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~l~~~L~~k~~ 78 (180)
||+|||||..+++.++. ..- .+++|+-.++..... --++.|+.+ ... ....+.++..+.+.+ .++-
T Consensus 102 PGIGKSTLLLQva~~lA---~~~-~vLYVsGEES~~Qik---lRA~RL~~~-~~~l~l~aEt~~e~I~~~l~~---~~p~ 170 (456)
T COG1066 102 PGIGKSTLLLQVAARLA---KRG-KVLYVSGEESLQQIK---LRADRLGLP-TNNLYLLAETNLEDIIAELEQ---EKPD 170 (456)
T ss_pred CCCCHHHHHHHHHHHHH---hcC-cEEEEeCCcCHHHHH---HHHHHhCCC-ccceEEehhcCHHHHHHHHHh---cCCC
Confidence 79999999999999974 222 577776554433322 234555543 111 223445544444443 6889
Q ss_pred EEEEeCCCCc
Q 046006 79 VLLLDDKWER 88 (180)
Q Consensus 79 LlVlDdv~~~ 88 (180)
|+|+|-++..
T Consensus 171 lvVIDSIQT~ 180 (456)
T COG1066 171 LVVIDSIQTL 180 (456)
T ss_pred EEEEecccee
Confidence 9999998764
No 98
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.65 E-value=0.023 Score=47.49 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=26.5
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCC-hHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGL-PLALIT 142 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~-PLal~~ 142 (180)
..+.++..+.++-.++|..+ ....+++.+.|. +-.|..
T Consensus 218 ~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 218 RQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred EEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHH
Confidence 46778888888888888876 456778887763 444433
No 99
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.65 E-value=0.033 Score=49.26 Aligned_cols=36 Identities=8% Similarity=0.024 Sum_probs=28.3
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..|++..++.++-.+.+.+. ....|++.++|.+..+
T Consensus 172 ~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 172 HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 57889999999988877764 4677899999987433
No 100
>PRK04296 thymidine kinase; Provisional
Probab=96.65 E-value=0.0021 Score=46.77 Aligned_cols=79 Identities=15% Similarity=0.021 Sum_probs=43.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL 81 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV 81 (180)
+|.||||+|..++.+.. .+-..++.+. ..++.......+++.++.. .........++....+.+ ..++.-++|
T Consensus 11 ~GsGKTT~~l~~~~~~~---~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~-~~~~~~~~~~~~~~~~~~-~~~~~dvvi 83 (190)
T PRK04296 11 MNSGKSTELLQRAYNYE---ERGMKVLVFK--PAIDDRYGEGKVVSRIGLS-REAIPVSSDTDIFELIEE-EGEKIDCVL 83 (190)
T ss_pred CCCHHHHHHHHHHHHHH---HcCCeEEEEe--ccccccccCCcEecCCCCc-ccceEeCChHHHHHHHHh-hCCCCCEEE
Confidence 59999999999988853 2222333332 1112222233455555543 111122345555656655 334556899
Q ss_pred EeCCCC
Q 046006 82 LDDKWE 87 (180)
Q Consensus 82 lDdv~~ 87 (180)
+|.+..
T Consensus 84 IDEaq~ 89 (190)
T PRK04296 84 IDEAQF 89 (190)
T ss_pred EEcccc
Confidence 999864
No 101
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.65 E-value=0.0046 Score=48.67 Aligned_cols=80 Identities=18% Similarity=0.029 Sum_probs=49.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCCCCcChHHHHHHHHHHhC-CCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG--DSWKNKNSEEKALEIFRFLS-KKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~-~k~ 77 (180)
++|+||||||.+++.... ..-..++|++....++.. .++.++.+.. ....+.+.++....+...++ +..
T Consensus 63 p~GsGKTtLal~~~~~~~---~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~ 134 (325)
T cd00983 63 PESSGKTTLALHAIAEAQ---KLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAV 134 (325)
T ss_pred CCCCCHHHHHHHHHHHHH---HcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCC
Confidence 479999999999887642 233457788766655542 3444443210 01123456666666666554 457
Q ss_pred EEEEEeCCCCc
Q 046006 78 FVLLLDDKWER 88 (180)
Q Consensus 78 ~LlVlDdv~~~ 88 (180)
-++|+|.|...
T Consensus 135 ~lIVIDSvaal 145 (325)
T cd00983 135 DLIVVDSVAAL 145 (325)
T ss_pred CEEEEcchHhh
Confidence 79999998643
No 102
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.65 E-value=0.0051 Score=48.38 Aligned_cols=80 Identities=15% Similarity=0.041 Sum_probs=49.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCCCCcChHHHHHHHHHHhC-CCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG--DSWKNKNSEEKALEIFRFLS-KKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~-~k~ 77 (180)
.+|+||||||.+++.... ..-..++|++....++.. .++.++.+.. ....+.+.++....+...++ +..
T Consensus 63 ~~GsGKTtLaL~~~~~~~---~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~ 134 (321)
T TIGR02012 63 PESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAV 134 (321)
T ss_pred CCCCCHHHHHHHHHHHHH---HcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCC
Confidence 479999999999887742 223456788666554442 3455554310 01123455666666665554 567
Q ss_pred EEEEEeCCCCc
Q 046006 78 FVLLLDDKWER 88 (180)
Q Consensus 78 ~LlVlDdv~~~ 88 (180)
-++|+|.|...
T Consensus 135 ~lIVIDSv~al 145 (321)
T TIGR02012 135 DIIVVDSVAAL 145 (321)
T ss_pred cEEEEcchhhh
Confidence 79999998754
No 103
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.61 E-value=0.009 Score=48.87 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||.|..++..+
T Consensus 107 ~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 107 LQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 47999999988888764
No 104
>PRK09354 recA recombinase A; Provisional
Probab=96.59 E-value=0.0064 Score=48.33 Aligned_cols=80 Identities=16% Similarity=0.035 Sum_probs=50.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCCCCcChHHHHHHHHHHhC-CCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG--DSWKNKNSEEKALEIFRFLS-KKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~-~k~ 77 (180)
.+|+||||||.+++.... ..-..++|+.....++.. .++.++.+.. ....+.+.++....+...++ +..
T Consensus 68 ~~GsGKTtLal~~~~~~~---~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~ 139 (349)
T PRK09354 68 PESSGKTTLALHAIAEAQ---KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAV 139 (349)
T ss_pred CCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 479999999999887732 233567888776666642 3455554310 01123456666666666554 457
Q ss_pred EEEEEeCCCCc
Q 046006 78 FVLLLDDKWER 88 (180)
Q Consensus 78 ~LlVlDdv~~~ 88 (180)
-++|+|-|...
T Consensus 140 ~lIVIDSvaaL 150 (349)
T PRK09354 140 DLIVVDSVAAL 150 (349)
T ss_pred CEEEEeChhhh
Confidence 79999998754
No 105
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.58 E-value=0.059 Score=42.79 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=31.0
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG 144 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~ 144 (180)
..+++.++++++..+.+... .+..+++.++|.|..+....
T Consensus 169 ~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 169 QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 46788899999988888764 67788999999887654443
No 106
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.037 Score=46.44 Aligned_cols=37 Identities=11% Similarity=0.037 Sum_probs=27.4
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI 141 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~ 141 (180)
..+++++++.++-.+.+.+. ....|++.++|.+.-+.
T Consensus 171 ~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 171 LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHH
Confidence 46788899998877765554 56788999999875443
No 107
>PRK06526 transposase; Provisional
Probab=96.52 E-value=0.006 Score=46.49 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||+||..+.+..
T Consensus 106 p~GtGKThLa~al~~~a 122 (254)
T PRK06526 106 PPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 48999999999998874
No 108
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.50 E-value=0.0095 Score=46.65 Aligned_cols=65 Identities=23% Similarity=0.266 Sum_probs=39.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL 81 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV 81 (180)
+|+|||.||..+++.+. ...+. +.++++ .+++..+-..... .+..+. .+.+. +.=|||
T Consensus 165 ~G~GKThLa~Aia~~l~--~~g~~-v~~~~~------~~l~~~lk~~~~~--------~~~~~~----l~~l~-~~dlLi 222 (306)
T PRK08939 165 FGVGKSYLLAAIANELA--KKGVS-STLLHF------PEFIRELKNSISD--------GSVKEK----IDAVK-EAPVLM 222 (306)
T ss_pred CCCCHHHHHHHHHHHHH--HcCCC-EEEEEH------HHHHHHHHHHHhc--------CcHHHH----HHHhc-CCCEEE
Confidence 69999999999999963 33343 445543 3566666555421 122222 22232 455899
Q ss_pred EeCCCCc
Q 046006 82 LDDKWER 88 (180)
Q Consensus 82 lDdv~~~ 88 (180)
|||+-..
T Consensus 223 IDDiG~e 229 (306)
T PRK08939 223 LDDIGAE 229 (306)
T ss_pred EecCCCc
Confidence 9998644
No 109
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.50 E-value=0.036 Score=47.19 Aligned_cols=41 Identities=17% Similarity=0.265 Sum_probs=30.9
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITIGR 145 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~~~ 145 (180)
..+++.++++++....+... .+..+++.++|.+- |+..+-.
T Consensus 171 q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 171 QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 57889999999998888864 67788999999664 4444443
No 110
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.50 E-value=0.0089 Score=43.17 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=42.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCC-------CeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------------------C
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDF-------DCVIWIVVSKDLQLEKIQEIVGKKVGLLD-------------------G 54 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f-------~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------------------~ 54 (180)
.+|+|||+++.+++.....-...| ..++|++...+ ..++.+.+........ .
T Consensus 40 ~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~--~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (193)
T PF13481_consen 40 PPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS--ESQIARRLRALLQDYDDDANLFFVDLSNWGCIRLFE 117 (193)
T ss_dssp CSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS---HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE---T
T ss_pred CCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC--HHHHHHHHHHHhcccCCccceEEeeccccccceeee
Confidence 479999999999988754211222 35677776554 3333333332221100 0
Q ss_pred CCCCCcChHHHHHHHHHHhCC--CcEEEEEeCCCCc
Q 046006 55 DSWKNKNSEEKALEIFRFLSK--KKFVLLLDDKWER 88 (180)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~L~~--k~~LlVlDdv~~~ 88 (180)
............+.+.+.+.. +.-++|+|++...
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~ 153 (193)
T PF13481_consen 118 PDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSL 153 (193)
T ss_dssp TS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG
T ss_pred cccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHH
Confidence 000111134556667777654 5779999998654
No 111
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.49 E-value=0.02 Score=43.65 Aligned_cols=85 Identities=19% Similarity=0.108 Sum_probs=52.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-----CCCHHHHHHHHHHHhCCCC---CCCCCCcChHHHH-HHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-----DLQLEKIQEIVGKKVGLLD---GDSWKNKNSEEKA-LEIFRF 72 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~-~~l~~~ 72 (180)
+|+|||||++.+..-. ..-.+.++..-.. .....+...++++.++.+. ..-+..-+..+.+ -.+.+.
T Consensus 48 SG~GKSTlgr~i~~L~----~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 48 SGCGKSTLGRLILGLE----EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred CCCCHHHHHHHHHcCc----CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHH
Confidence 7999999999998874 3445566554221 2234455667777776541 0111122333333 346677
Q ss_pred hCCCcEEEEEeCCCCccc
Q 046006 73 LSKKKFVLLLDDKWERVD 90 (180)
Q Consensus 73 L~~k~~LlVlDdv~~~~~ 90 (180)
|.-++-++|.|+.-+.-+
T Consensus 124 Lal~P~liV~DEpvSaLD 141 (268)
T COG4608 124 LALNPKLIVADEPVSALD 141 (268)
T ss_pred HhhCCcEEEecCchhhcc
Confidence 788999999999776543
No 112
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.48 E-value=0.0015 Score=43.52 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+++.+
T Consensus 7 ~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 7 PPGSGKSTLAKELAERL 23 (121)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999984
No 113
>CHL00176 ftsH cell division protein; Validated
Probab=96.47 E-value=0.065 Score=46.20 Aligned_cols=31 Identities=13% Similarity=0.301 Sum_probs=23.4
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCC
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVG 135 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g 135 (180)
..+.++..+.++-.++|+.+ ....+++.+.|
T Consensus 346 ~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G 386 (638)
T CHL00176 346 RQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPG 386 (638)
T ss_pred eEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCC
Confidence 46778888888888888876 45667777776
No 114
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.46 E-value=0.0074 Score=44.17 Aligned_cols=83 Identities=18% Similarity=0.128 Sum_probs=47.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~ 78 (180)
+.|+||||.+.+++..+. .+ -..+..++... .....+-++..++.++.+-.......+..+......+.++ ++.=
T Consensus 9 ptGvGKTTt~aKLAa~~~-~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D 85 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARLK-LK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYD 85 (196)
T ss_dssp STTSSHHHHHHHHHHHHH-HT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSS
T ss_pred CCCCchHhHHHHHHHHHh-hc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCC
Confidence 479999999888888753 22 34567777654 4466777888888887651111122234444433333333 3334
Q ss_pred EEEEeCCC
Q 046006 79 VLLLDDKW 86 (180)
Q Consensus 79 LlVlDdv~ 86 (180)
++++|=.-
T Consensus 86 ~vlIDT~G 93 (196)
T PF00448_consen 86 LVLIDTAG 93 (196)
T ss_dssp EEEEEE-S
T ss_pred EEEEecCC
Confidence 66677653
No 115
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.45 E-value=0.0047 Score=44.49 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=36.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
.+|+|||.||..+++.. ....+. +.|++ ..+++..+-..- ...+.++. .+.+. +.=||
T Consensus 55 ~~G~GKThLa~ai~~~~--~~~g~~-v~f~~------~~~L~~~l~~~~--------~~~~~~~~----~~~l~-~~dlL 112 (178)
T PF01695_consen 55 PPGTGKTHLAVAIANEA--IRKGYS-VLFIT------ASDLLDELKQSR--------SDGSYEEL----LKRLK-RVDLL 112 (178)
T ss_dssp STTSSHHHHHHHHHHHH--HHTT---EEEEE------HHHHHHHHHCCH--------CCTTHCHH----HHHHH-TSSCE
T ss_pred hHhHHHHHHHHHHHHHh--ccCCcc-eeEee------cCceeccccccc--------cccchhhh----cCccc-cccEe
Confidence 37999999999999884 233333 45553 445555543211 11122222 22333 33588
Q ss_pred EEeCCCCc
Q 046006 81 LLDDKWER 88 (180)
Q Consensus 81 VlDdv~~~ 88 (180)
||||+-..
T Consensus 113 ilDDlG~~ 120 (178)
T PF01695_consen 113 ILDDLGYE 120 (178)
T ss_dssp EEETCTSS
T ss_pred ccccccee
Confidence 89998644
No 116
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.45 E-value=0.0089 Score=45.60 Aligned_cols=86 Identities=19% Similarity=0.193 Sum_probs=49.2
Q ss_pred CCCCcHHHHHHHHHccccccc----CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcChHHHH---H
Q 046006 1 MGGVGKTTLLTHINNKFLVSS----TDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKNSEEKA---L 67 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~---~ 67 (180)
.+|+|||+||.+++-.. ... ..-..++|++-...++...+. +|++..+..... .....+.+++. .
T Consensus 46 ~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L~ 123 (256)
T PF08423_consen 46 ESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEELLELLE 123 (256)
T ss_dssp STTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHHH
T ss_pred ecccccchHHHHHHHHh-hcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHHHHHHHH
Confidence 37999999999886442 111 122468999988888887765 466655432000 01122344443 3
Q ss_pred HHHHHh-CCCcEEEEEeCCCCc
Q 046006 68 EIFRFL-SKKKFVLLLDDKWER 88 (180)
Q Consensus 68 ~l~~~L-~~k~~LlVlDdv~~~ 88 (180)
.+...+ .++--|||+|.+-..
T Consensus 124 ~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 124 QLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp HHHHHHHHSCEEEEEEETSSHH
T ss_pred HHHhhccccceEEEEecchHHH
Confidence 333333 356679999998543
No 117
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0082 Score=50.67 Aligned_cols=64 Identities=16% Similarity=0.131 Sum_probs=39.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
+||+|||.||+.+++++. +=|+.++-+ +|... ....+.+...+...+.-..-++++
T Consensus 231 PPGCGKT~lA~AiAgel~--------vPf~~isAp--------eivSG--------vSGESEkkiRelF~~A~~~aPciv 286 (802)
T KOG0733|consen 231 PPGCGKTSLANAIAGELG--------VPFLSISAP--------EIVSG--------VSGESEKKIRELFDQAKSNAPCIV 286 (802)
T ss_pred CCCccHHHHHHHHhhhcC--------CceEeecch--------hhhcc--------cCcccHHHHHHHHHHHhccCCeEE
Confidence 589999999999999963 223333311 12122 223344444444445556789999
Q ss_pred EEeCCCCc
Q 046006 81 LLDDKWER 88 (180)
Q Consensus 81 VlDdv~~~ 88 (180)
.+|+++..
T Consensus 287 FiDeIDAI 294 (802)
T KOG0733|consen 287 FIDEIDAI 294 (802)
T ss_pred Eeeccccc
Confidence 99999865
No 118
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.41 E-value=0.015 Score=47.67 Aligned_cols=82 Identities=21% Similarity=0.169 Sum_probs=42.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
.+|+||||.|..++..+. +..+ .+..++... .+...+.+..+++.++.+........+.........+.+.+. =+
T Consensus 103 ~~GsGKTTtaakLA~~L~--~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~~~-Dv 178 (437)
T PRK00771 103 LQGSGKTTTAAKLARYFK--KKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFKKA-DV 178 (437)
T ss_pred CCCCcHHHHHHHHHHHHH--HcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhhcC-CE
Confidence 479999999999998763 2223 333444332 223345566667776654111111223333333333333333 45
Q ss_pred EEEeCCC
Q 046006 80 LLLDDKW 86 (180)
Q Consensus 80 lVlDdv~ 86 (180)
+|+|..-
T Consensus 179 VIIDTAG 185 (437)
T PRK00771 179 IIVDTAG 185 (437)
T ss_pred EEEECCC
Confidence 6777663
No 119
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.38 E-value=0.0088 Score=49.08 Aligned_cols=34 Identities=3% Similarity=0.017 Sum_probs=25.8
Q ss_pred cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
+..+.++..+.++..++|..+ ....++..+.|+-
T Consensus 346 d~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~s 389 (438)
T PTZ00361 346 DRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELS 389 (438)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCC
Confidence 357888999999999999877 3567777776653
No 120
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.035 Score=46.34 Aligned_cols=66 Identities=24% Similarity=0.255 Sum_probs=38.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh----CCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL----SKK 76 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L----~~k 76 (180)
++|+|||+||..++.. ..|..+--++ +++ .-..+.......+++.. +..
T Consensus 546 p~~sGKTaLAA~iA~~-----S~FPFvKiiS------pe~----------------miG~sEsaKc~~i~k~F~DAYkS~ 598 (744)
T KOG0741|consen 546 PPGSGKTALAAKIALS-----SDFPFVKIIS------PED----------------MIGLSESAKCAHIKKIFEDAYKSP 598 (744)
T ss_pred CCCCChHHHHHHHHhh-----cCCCeEEEeC------hHH----------------ccCccHHHHHHHHHHHHHHhhcCc
Confidence 4799999999999987 5676443332 111 11122333333444433 456
Q ss_pred cEEEEEeCCCCcccccc
Q 046006 77 KFVLLLDDKWERVDLNK 93 (180)
Q Consensus 77 ~~LlVlDdv~~~~~l~~ 93 (180)
-..+|+||+...-++-.
T Consensus 599 lsiivvDdiErLiD~vp 615 (744)
T KOG0741|consen 599 LSIIVVDDIERLLDYVP 615 (744)
T ss_pred ceEEEEcchhhhhcccc
Confidence 67888888877655444
No 121
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.37 E-value=0.014 Score=43.84 Aligned_cols=81 Identities=10% Similarity=0.043 Sum_probs=47.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------------C---------C-
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD---------------G---------D- 55 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------------~---------~- 55 (180)
.+|+|||+||.++..... ..-..++|++... +..++.+.+. .++.+. . .
T Consensus 29 ~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~~~-~~g~~~~~~~~~g~l~~~d~~~~~~~~~~~~~~ 102 (237)
T TIGR03877 29 GPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRNMA-QFGWDVRKYEEEGKFAIVDAFTGGIGEAAEREK 102 (237)
T ss_pred CCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHHHH-HhCCCHHHHhhcCCEEEEecccccccccccccc
Confidence 389999999999876521 2345678887654 4445544432 232210 0 0
Q ss_pred --CCCCcChHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 046006 56 --SWKNKNSEEKALEIFRFLSK-KKFVLLLDDKWE 87 (180)
Q Consensus 56 --~~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~ 87 (180)
.....+.++....+++.++. +.-++|+|.+..
T Consensus 103 ~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~ 137 (237)
T TIGR03877 103 YVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTT 137 (237)
T ss_pred ccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhH
Confidence 01224566677777776642 444799998754
No 122
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.35 E-value=0.012 Score=47.28 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=44.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC---CCcChHHHHHHHHHHhCCCcE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSW---KNKNSEEKALEIFRFLSKKKF 78 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~l~~~L~~k~~ 78 (180)
+|+|||||+.+++.... ..-..++|++...+ ..++. .-++.++.. .... ...+.++..+.+. ..+.-
T Consensus 91 pG~GKStLllq~a~~~a---~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~-~~~l~l~~e~~le~I~~~i~---~~~~~ 160 (372)
T cd01121 91 PGIGKSTLLLQVAARLA---KRGGKVLYVSGEES--PEQIK-LRADRLGIS-TENLYLLAETNLEDILASIE---ELKPD 160 (372)
T ss_pred CCCCHHHHHHHHHHHHH---hcCCeEEEEECCcC--HHHHH-HHHHHcCCC-cccEEEEccCcHHHHHHHHH---hcCCc
Confidence 79999999999988753 22245777765433 33332 224455543 1111 2233444444332 34677
Q ss_pred EEEEeCCCCc
Q 046006 79 VLLLDDKWER 88 (180)
Q Consensus 79 LlVlDdv~~~ 88 (180)
++|+|.+...
T Consensus 161 lVVIDSIq~l 170 (372)
T cd01121 161 LVIIDSIQTV 170 (372)
T ss_pred EEEEcchHHh
Confidence 8999998643
No 123
>PRK08181 transposase; Validated
Probab=96.35 E-value=0.014 Score=44.83 Aligned_cols=66 Identities=20% Similarity=0.158 Sum_probs=36.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
.+|+|||.||..+++... ...+ .++|++ ..+++..+..... ..+.+.... .+. +.=||
T Consensus 114 p~GtGKTHLa~Aia~~a~--~~g~-~v~f~~------~~~L~~~l~~a~~--------~~~~~~~l~----~l~-~~dLL 171 (269)
T PRK08181 114 PPGGGKSHLAAAIGLALI--ENGW-RVLFTR------TTDLVQKLQVARR--------ELQLESAIA----KLD-KFDLL 171 (269)
T ss_pred cCCCcHHHHHHHHHHHHH--HcCC-ceeeee------HHHHHHHHHHHHh--------CCcHHHHHH----HHh-cCCEE
Confidence 479999999999998742 2222 345553 3455555533321 112222222 222 34599
Q ss_pred EEeCCCCc
Q 046006 81 LLDDKWER 88 (180)
Q Consensus 81 VlDdv~~~ 88 (180)
||||+...
T Consensus 172 IIDDlg~~ 179 (269)
T PRK08181 172 ILDDLAYV 179 (269)
T ss_pred EEeccccc
Confidence 99998543
No 124
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.34 E-value=0.0036 Score=47.77 Aligned_cols=20 Identities=5% Similarity=0.042 Sum_probs=16.3
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
..+.+++++.++-.+++.+.
T Consensus 171 ~~i~f~~~~~~el~~Il~~~ 190 (261)
T TIGR02881 171 ISIDFPDYTVEELMEIAERM 190 (261)
T ss_pred eEEEECCCCHHHHHHHHHHH
Confidence 46788999999988888765
No 125
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.34 E-value=0.047 Score=46.70 Aligned_cols=43 Identities=16% Similarity=0.284 Sum_probs=33.1
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCCh-HHHHHHHHHh
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLP-LALITIGRAI 147 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~P-Lal~~~~~~L 147 (180)
..+++++++.++..+.+.+. .+..|++.++|.+ .|+..+...+
T Consensus 171 q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 171 QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46789999999998888764 6788889999854 6777765444
No 126
>PRK10867 signal recognition particle protein; Provisional
Probab=96.34 E-value=0.016 Score=47.47 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||.|..++..+
T Consensus 108 ~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 108 LQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 47999999888888765
No 127
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.30 E-value=0.038 Score=43.96 Aligned_cols=87 Identities=11% Similarity=0.172 Sum_probs=50.9
Q ss_pred CCCCcHHHHHHHHHcccc--cccC-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCCcChHHHHHHHH-
Q 046006 1 MGGVGKTTLLTHINNKFL--VSST-DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS------WKNKNSEEKALEIF- 70 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~--~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~------~~~~~~~~~~~~l~- 70 (180)
.+|+|||+||..++-... .... .-..++|++...+++.+++ .++++.++...... ....+.+.....+.
T Consensus 131 ~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~ 209 (342)
T PLN03186 131 EFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLNGADVLENVAYARAYNTDHQSELLLE 209 (342)
T ss_pred CCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCChhhhccceEEEecCCHHHHHHHHHH
Confidence 379999999998875421 0011 1126899999888888776 45566665531100 11233444433332
Q ss_pred --HHh-CCCcEEEEEeCCCCc
Q 046006 71 --RFL-SKKKFVLLLDDKWER 88 (180)
Q Consensus 71 --~~L-~~k~~LlVlDdv~~~ 88 (180)
..+ ..+.-|+|+|-+...
T Consensus 210 ~~~~~~~~~~~LIVIDSI~al 230 (342)
T PLN03186 210 AASMMAETRFALMIVDSATAL 230 (342)
T ss_pred HHHHhhccCCCEEEEeCcHHH
Confidence 233 356779999997543
No 128
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.29 E-value=0.045 Score=47.99 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=25.9
Q ss_pred cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
+..+.++..+.++-.++|..+ ....+++.+.|.-
T Consensus 614 d~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 614 DRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYT 657 (733)
T ss_pred ceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCC
Confidence 356778888888888888766 4678888888753
No 129
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.28 E-value=0.026 Score=45.87 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=29.0
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI 141 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~ 141 (180)
..+++.++++++..+.+... .+..|++.++|.+--+.
T Consensus 179 ~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 179 QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 46788999999988777764 68899999999775443
No 130
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.26 E-value=0.025 Score=42.31 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=48.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----------------CCCCcChH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD-----------------SWKNKNSE 63 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----------------~~~~~~~~ 63 (180)
.+|+|||+||.++.... . ..=..++|++..++ ..++.+++ ++++..... .....+.+
T Consensus 33 ~~GsGKt~l~~~~~~~~--~-~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~ 106 (234)
T PRK06067 33 DHGTGKSVLSQQFVYGA--L-KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGFEWNSTLAN 106 (234)
T ss_pred CCCCChHHHHHHHHHHH--H-hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccccccCcchHH
Confidence 37999999999997652 1 22346788887643 44555543 334322000 01123346
Q ss_pred HHHHHHHHHhCC-CcEEEEEeCCC
Q 046006 64 EKALEIFRFLSK-KKFVLLLDDKW 86 (180)
Q Consensus 64 ~~~~~l~~~L~~-k~~LlVlDdv~ 86 (180)
++...+.+.+.. +.-++|+|.+.
T Consensus 107 ~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 107 KLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEecHH
Confidence 677777777753 56689999975
No 131
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.027 Score=43.48 Aligned_cols=82 Identities=18% Similarity=0.105 Sum_probs=49.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH-hCCCCCCCCCCcChHHH---HHHHHHHhCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK-VGLLDGDSWKNKNSEEK---ALEIFRFLSKK 76 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~---~~~l~~~L~~k 76 (180)
+.|+||||+|.+++-.-. ..-..++|++.-..+++..+.. ++.. +.. -....+.+.++. ++.+......+
T Consensus 68 ~~gsGKT~lal~~~~~aq---~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~--l~v~~~~~~e~q~~i~~~~~~~~~~~ 141 (279)
T COG0468 68 PESSGKTTLALQLVANAQ---KPGGKAAFIDTEHALDPERAKQ-LGVDLLDN--LLVSQPDTGEQQLEIAEKLARSGAEK 141 (279)
T ss_pred CCCcchhhHHHHHHHHhh---cCCCeEEEEeCCCCCCHHHHHH-HHHhhhcc--eeEecCCCHHHHHHHHHHHHHhccCC
Confidence 469999999999877632 3334789999888888777643 3333 211 111223334433 33333333445
Q ss_pred cEEEEEeCCCCc
Q 046006 77 KFVLLLDDKWER 88 (180)
Q Consensus 77 ~~LlVlDdv~~~ 88 (180)
--|+|+|.+-..
T Consensus 142 i~LvVVDSvaa~ 153 (279)
T COG0468 142 IDLLVVDSVAAL 153 (279)
T ss_pred CCEEEEecCccc
Confidence 679999998654
No 132
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.25 E-value=0.036 Score=43.58 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=50.9
Q ss_pred CCCCcHHHHHHHHHccccccc---CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcChHHHH---HH
Q 046006 1 MGGVGKTTLLTHINNKFLVSS---TDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKNSEEKA---LE 68 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~---~~ 68 (180)
.+|+|||+||.+++-.....+ ..-..++|++....++.+++. ++++.++..... .....+.++.. ..
T Consensus 104 ~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~ 182 (313)
T TIGR02238 104 EFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSEHQMELLDY 182 (313)
T ss_pred CCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHHHHHHHHHH
Confidence 479999999998774311110 112468899988888888775 456666654110 01122334333 33
Q ss_pred HHHHh-CCCcEEEEEeCCCCc
Q 046006 69 IFRFL-SKKKFVLLLDDKWER 88 (180)
Q Consensus 69 l~~~L-~~k~~LlVlDdv~~~ 88 (180)
+...+ +++--|+|+|.+...
T Consensus 183 l~~~i~~~~~~LvVIDSisal 203 (313)
T TIGR02238 183 LAAKFSEEPFRLLIVDSIMAL 203 (313)
T ss_pred HHHHhhccCCCEEEEEcchHh
Confidence 44344 345668999998543
No 133
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.24 E-value=0.036 Score=44.10 Aligned_cols=87 Identities=14% Similarity=0.101 Sum_probs=51.0
Q ss_pred CCCCcHHHHHHHHHccccc--ccC-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcChHHHH---HH
Q 046006 1 MGGVGKTTLLTHINNKFLV--SST-DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKNSEEKA---LE 68 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~--~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~---~~ 68 (180)
.+|+|||+||.+++-.... ... .-..++|++...+++..++.. +++.++.+... .....+.++.. ..
T Consensus 134 ~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~ 212 (344)
T PLN03187 134 EFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTYEHQYNLLLG 212 (344)
T ss_pred CCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCHHHHHHHHHH
Confidence 3799999999998643111 011 124679999988888887654 56666554110 01223444433 33
Q ss_pred HHHHh-CCCcEEEEEeCCCCc
Q 046006 69 IFRFL-SKKKFVLLLDDKWER 88 (180)
Q Consensus 69 l~~~L-~~k~~LlVlDdv~~~ 88 (180)
+...+ ..+--|+|+|.+...
T Consensus 213 l~~~i~~~~~~LvVIDSital 233 (344)
T PLN03187 213 LAAKMAEEPFRLLIVDSVIAL 233 (344)
T ss_pred HHHHHHhcCCCEEEEeCcHHh
Confidence 33334 345668999998543
No 134
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=96.23 E-value=0.0061 Score=45.27 Aligned_cols=81 Identities=25% Similarity=0.355 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC---CCCCCCcChHH------HHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLD---GDSWKNKNSEE------KALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~------~~~~l~~ 71 (180)
+|+|||+|+..+.++. .-+.++++-+++.. ...++.+++...-..+. .......+... ..-.+.+
T Consensus 24 ~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~t~AE 98 (215)
T PF00006_consen 24 AGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTALTIAE 98 (215)
T ss_dssp TTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccchhhhH
Confidence 6999999999999983 33556888887654 56666666644311110 00011111111 1122233
Q ss_pred Hh--CCCcEEEEEeCCCC
Q 046006 72 FL--SKKKFVLLLDDKWE 87 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~ 87 (180)
++ +++..|+++||+..
T Consensus 99 yfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 99 YFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHTTSEEEEEEETHHH
T ss_pred HHhhcCCceeehhhhhHH
Confidence 33 68999999999754
No 135
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.22 E-value=0.0045 Score=49.49 Aligned_cols=17 Identities=24% Similarity=0.200 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||.+|+.+++.+
T Consensus 156 PPGcGKTllAraiA~el 172 (413)
T PLN00020 156 GKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 48999999999999995
No 136
>PRK04132 replication factor C small subunit; Provisional
Probab=96.22 E-value=0.12 Score=45.86 Aligned_cols=120 Identities=13% Similarity=0.049 Sum_probs=67.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
+.++||||+|..+++++- - +.+ ...+-++.+...+...+ +++.+.+... . +.. ..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l~-g-~~~~~~~lElNASd~rgid~I-R~iIk~~a~~-~-~~~---------------~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALARELF-G-ENWRHNFLELNASDERGINVI-REKVKEFART-K-PIG---------------GASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhhh-c-ccccCeEEEEeCCCcccHHHH-HHHHHHHHhc-C-CcC---------------CCCCEE
Confidence 358999999999999852 1 222 23566777765555443 3443332111 0 000 113456
Q ss_pred EEEeCCCCccc---------ccc--c-----------ccccc-cccccceEeecCCChhhhHHHHHHH-----------H
Q 046006 80 LLLDDKWERVD---------LNK--G-----------LFVCG-LVEANKNFKVECLSDNDAWELLRQK-----------L 125 (180)
Q Consensus 80 lVlDdv~~~~~---------l~~--g-----------~~~~~-~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~ 125 (180)
+|+|+++.... ++. + ..+.. -.+....+.+++++.++-.+.+... .
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~ 713 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEG 713 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 66777666531 110 0 11111 1112357889999998888777643 6
Q ss_pred HHHHHHHcCCChHHH
Q 046006 126 AQTVAKKCVGLPLAL 140 (180)
Q Consensus 126 ~~~i~~~c~g~PLal 140 (180)
...|++.|+|.+...
T Consensus 714 L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 714 LQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHcCCCHHHH
Confidence 788999999987433
No 137
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.20 E-value=0.17 Score=39.83 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=29.2
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI 141 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~ 141 (180)
..+++.+++.++..+.+.+. ....+++.++|.+-.+.
T Consensus 177 ~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 177 LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 46788999999988888775 67888999988765543
No 138
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.20 E-value=0.029 Score=43.87 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=48.8
Q ss_pred CCCCcHHHHHHHHHcccccccC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcChH---HHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSST----DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKNSE---EKAL 67 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~---~~~~ 67 (180)
.+|+|||++|.+++.... ... .-..++||+....++...+. ++++.++..... -....+.+ ....
T Consensus 103 ~~g~GKT~l~~~~~~~~~-~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~~~~~~~~i~i~~~~~~~~~~~lld 180 (310)
T TIGR02236 103 EFGSGKTQICHQLAVNVQ-LPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLDPDEVLKNIYVARAYNSNHQMLLVE 180 (310)
T ss_pred CCCCCHHHHHHHHHHHhc-CCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhhceEEEecCCHHHHHHHHH
Confidence 379999999999986631 110 11368999988888877654 445555443100 00111111 2334
Q ss_pred HHHHHhCC---CcEEEEEeCCCCc
Q 046006 68 EIFRFLSK---KKFVLLLDDKWER 88 (180)
Q Consensus 68 ~l~~~L~~---k~~LlVlDdv~~~ 88 (180)
.+.+.+.. +.-++|+|.+...
T Consensus 181 ~l~~~i~~~~~~~~lVVIDSisa~ 204 (310)
T TIGR02236 181 KAEDLIKELNNPVKLLIVDSLTSH 204 (310)
T ss_pred HHHHHHHhcCCCceEEEEecchHh
Confidence 45555543 2459999997543
No 139
>PRK09183 transposase/IS protein; Provisional
Probab=96.19 E-value=0.018 Score=44.03 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||+||..+++..
T Consensus 110 p~GtGKThLa~al~~~a 126 (259)
T PRK09183 110 PSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998773
No 140
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.14 E-value=0.13 Score=44.02 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=30.8
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALIT 142 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~ 142 (180)
..+++.+++.++....+.+. ....|++.++|.+.-+..
T Consensus 184 q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 184 QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 57889999999998888875 677889999998865543
No 141
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.14 E-value=0.039 Score=43.38 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=50.1
Q ss_pred CCCCcHHHHHHHHHcccccccCC----CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC------CCCcCh---HHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTD----FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS------WKNKNS---EEKAL 67 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~------~~~~~~---~~~~~ 67 (180)
.+|+|||++|.+++.... .... =..++|++...+++...+. ++++.++...... ....+. .....
T Consensus 110 ~~GsGKT~l~~~~~~~~~-~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~~~~~~l~~i~~~~~~~~~~~~~~~~ 187 (317)
T PRK04301 110 EFGSGKTQICHQLAVNVQ-LPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGLDPDEVLDNIHVARAYNSDHQMLLAE 187 (317)
T ss_pred CCCCCHhHHHHHHHHHhc-cccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCCChHhhhccEEEEeCCCHHHHHHHHH
Confidence 479999999999986631 1111 1478999988888877664 3445554321000 011111 23344
Q ss_pred HHHHHhCC--CcEEEEEeCCCCc
Q 046006 68 EIFRFLSK--KKFVLLLDDKWER 88 (180)
Q Consensus 68 ~l~~~L~~--k~~LlVlDdv~~~ 88 (180)
.+...+.. +--|+|+|-+...
T Consensus 188 ~l~~~i~~~~~~~lvVIDSisa~ 210 (317)
T PRK04301 188 KAEELIKEGENIKLVIVDSLTAH 210 (317)
T ss_pred HHHHHHhccCceeEEEEECchHH
Confidence 55555543 4559999998553
No 142
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.16 Score=40.74 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=27.7
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..++..++++++....+... ....+++.++|.+-.+
T Consensus 160 ~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 160 QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDA 206 (367)
T ss_pred eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHH
Confidence 46889999999988877764 6778888898866533
No 143
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.13 E-value=0.033 Score=43.12 Aligned_cols=79 Identities=23% Similarity=0.249 Sum_probs=41.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
++|+||||++..++..+. .+..-..+..++.... ....+.+....+.++.+ . ....+..++...+.. +.+ .=+
T Consensus 202 ptGvGKTTt~~kLa~~~~-~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p-~--~~~~~~~~l~~~l~~-~~~-~d~ 275 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFV-LEHGNKKVALITTDTYRIGAVEQLKTYAKILGVP-V--KVARDPKELRKALDR-LRD-KDL 275 (282)
T ss_pred CCCCCHHHHHHHHHHHHH-HHcCCCeEEEEECCccchhHHHHHHHHHHHhCCc-e--eccCCHHHHHHHHHH-ccC-CCE
Confidence 479999999999988752 2211123455554432 22333444445555544 1 122344444444443 343 457
Q ss_pred EEEeCC
Q 046006 80 LLLDDK 85 (180)
Q Consensus 80 lVlDdv 85 (180)
+++|..
T Consensus 276 vliDt~ 281 (282)
T TIGR03499 276 ILIDTA 281 (282)
T ss_pred EEEeCC
Confidence 777753
No 144
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.12 E-value=0.18 Score=43.34 Aligned_cols=82 Identities=10% Similarity=0.008 Sum_probs=48.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCccc--c-------ccc---------------ccccccc-cccceEeecCCChhhhH
Q 046006 64 EKALEIFRFLSKKKFVLLLDDKWERVD--L-------NKG---------------LFVCGLV-EANKNFKVECLSDNDAW 118 (180)
Q Consensus 64 ~~~~~l~~~L~~k~~LlVlDdv~~~~~--l-------~~g---------------~~~~~~~-~~~~~~~l~~L~~~~a~ 118 (180)
..+..+.+.+++++++++-|+.|.... + ..+ ..+.... +....+.+.+++.+|..
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~ 359 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence 356788888888998888776654321 0 110 0000000 11135678899999999
Q ss_pred HHHHHH-----------HHHHHHHHcCCChHHHHHHHH
Q 046006 119 ELLRQK-----------LAQTVAKKCVGLPLALITIGR 145 (180)
Q Consensus 119 ~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~ 145 (180)
+++.+. ....|.+.+..-+.++..++.
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys~~gRraln~L~~ 397 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYTIEGRKAVNILAD 397 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCCCcHHHHHHHHHH
Confidence 998887 344444555444566665543
No 145
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=96.11 E-value=0.015 Score=47.67 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=48.1
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l~~ 71 (180)
+|+|||||++.++... ..+.++..-+++.. ...++...++..-+.+.. ......+... ..-.+.+
T Consensus 171 sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAE 245 (444)
T PRK08972 171 SGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAE 245 (444)
T ss_pred CCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998762 33566777677655 445566665444222100 0111111111 1233445
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++.+|+++||+-..
T Consensus 246 yfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 246 YFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHcCCCEEEEEcChHHH
Confidence 55 589999999998654
No 146
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.09 E-value=0.029 Score=47.87 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=29.8
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG 144 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~ 144 (180)
..+.+++++.++..+.+.+. .+..|++.++|.+..+...-
T Consensus 172 ~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 172 QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 46778888888888777664 57789999999886554433
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.09 E-value=0.059 Score=48.00 Aligned_cols=20 Identities=30% Similarity=0.298 Sum_probs=17.0
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
..+.+++++.++..++|...
T Consensus 343 ~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 343 QVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred eEEEeCCCCHHHHHHHHHHH
Confidence 47899999999999997544
No 148
>PRK06921 hypothetical protein; Provisional
Probab=96.05 E-value=0.022 Score=43.72 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEe
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVV 32 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~ 32 (180)
+|+|||.||..+++... ..+...+++++.
T Consensus 126 ~G~GKThLa~aia~~l~--~~~g~~v~y~~~ 154 (266)
T PRK06921 126 PGSGKTHLLTAAANELM--RKKGVPVLYFPF 154 (266)
T ss_pred CCCcHHHHHHHHHHHHh--hhcCceEEEEEH
Confidence 79999999999999852 221234566653
No 149
>CHL00181 cbbX CbbX; Provisional
Probab=96.04 E-value=0.028 Score=43.61 Aligned_cols=20 Identities=0% Similarity=0.072 Sum_probs=16.4
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
..+.+++++.+|-.+++...
T Consensus 189 ~~i~F~~~t~~el~~I~~~~ 208 (287)
T CHL00181 189 NHVDFPDYTPEELLQIAKIM 208 (287)
T ss_pred ceEEcCCcCHHHHHHHHHHH
Confidence 46888899999988887775
No 150
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.03 E-value=0.022 Score=49.07 Aligned_cols=64 Identities=23% Similarity=0.294 Sum_probs=44.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh--CCCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL--SKKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L--~~k~~ 78 (180)
++|.||||||.-++++ ..| -++=|+.|...+...+-..|...+... ..+ .+++.
T Consensus 334 ppGlGKTTLAHViAkq-----aGY-sVvEINASDeRt~~~v~~kI~~avq~~------------------s~l~adsrP~ 389 (877)
T KOG1969|consen 334 PPGLGKTTLAHVIAKQ-----AGY-SVVEINASDERTAPMVKEKIENAVQNH------------------SVLDADSRPV 389 (877)
T ss_pred CCCCChhHHHHHHHHh-----cCc-eEEEecccccccHHHHHHHHHHHHhhc------------------cccccCCCcc
Confidence 5899999999999998 233 356678888777777777776655322 112 14666
Q ss_pred EEEEeCCCCc
Q 046006 79 VLLLDDKWER 88 (180)
Q Consensus 79 LlVlDdv~~~ 88 (180)
-||+|.++..
T Consensus 390 CLViDEIDGa 399 (877)
T KOG1969|consen 390 CLVIDEIDGA 399 (877)
T ss_pred eEEEecccCC
Confidence 7888888765
No 151
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=96.03 E-value=0.014 Score=48.08 Aligned_cols=84 Identities=19% Similarity=0.237 Sum_probs=51.1
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~ 71 (180)
+|+|||||+..+.++. .+++-+.++++-+++.. ...++...+...-..... ......+.. ...-.+.+
T Consensus 152 ~G~GKt~Ll~~~~~~~--~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~a~tiAE 229 (461)
T PRK12597 152 AGVGKTVLMMELIFNI--SKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLTGLTIAE 229 (461)
T ss_pred CCCChhHHHHHHHHHH--HhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998884 22356788888777654 556666666543221100 011112211 12334555
Q ss_pred Hh---CCCcEEEEEeCCCC
Q 046006 72 FL---SKKKFVLLLDDKWE 87 (180)
Q Consensus 72 ~L---~~k~~LlVlDdv~~ 87 (180)
++ .++.+|+++||+-.
T Consensus 230 yfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 230 YLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHhcCCceEEEeccchH
Confidence 55 37899999999954
No 152
>PRK04328 hypothetical protein; Provisional
Probab=96.02 E-value=0.018 Score=43.65 Aligned_cols=81 Identities=9% Similarity=0.009 Sum_probs=45.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------C-------CC-----------
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD------G-------DS----------- 56 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~-------~~----------- 56 (180)
.+|+|||+||.++.... . ..-...+|++..++ ..++.+ .++.++.+. . ..
T Consensus 31 ~pGsGKT~l~~~fl~~~--~-~~ge~~lyis~ee~--~~~i~~-~~~~~g~d~~~~~~~~~l~iid~~~~~~~~~~~~~~ 104 (249)
T PRK04328 31 GPGTGKSIFSQQFLWNG--L-QMGEPGVYVALEEH--PVQVRR-NMRQFGWDVRKYEEEGKFAIVDAFTGGIGSAAKREK 104 (249)
T ss_pred CCCCCHHHHHHHHHHHH--H-hcCCcEEEEEeeCC--HHHHHH-HHHHcCCCHHHHhhcCCEEEEecccccccccccccc
Confidence 37999999999987662 1 22356788876653 333332 233333210 0 00
Q ss_pred ---CCCcChHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 046006 57 ---WKNKNSEEKALEIFRFLSK-KKFVLLLDDKWE 87 (180)
Q Consensus 57 ---~~~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~ 87 (180)
....+.++....+.+.++. +.-++|+|.+..
T Consensus 105 ~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~ 139 (249)
T PRK04328 105 YVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVST 139 (249)
T ss_pred ccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhH
Confidence 0123455666666666643 455799998743
No 153
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.95 E-value=0.028 Score=43.54 Aligned_cols=20 Identities=5% Similarity=0.001 Sum_probs=17.2
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
..+++++++.+|-.+++...
T Consensus 188 ~~i~fp~l~~edl~~I~~~~ 207 (284)
T TIGR02880 188 HHVDFPDYSEAELLVIAGLM 207 (284)
T ss_pred cEEEeCCcCHHHHHHHHHHH
Confidence 46889999999999998875
No 154
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.16 Score=43.39 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=30.3
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITIGR 145 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~~~ 145 (180)
..+++.+++.++..+.+.+. ....|++.++|.+- ++..+-.
T Consensus 170 ~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 170 HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 57889999999988888764 56678888999774 4444433
No 155
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.94 E-value=0.0042 Score=41.53 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 6 ~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 6 IPGSGKTTIAKELAERL 22 (129)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998883
No 156
>PRK06620 hypothetical protein; Validated
Probab=95.94 E-value=0.14 Score=37.93 Aligned_cols=43 Identities=5% Similarity=-0.067 Sum_probs=30.1
Q ss_pred cccccccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 98 CGLVEANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 98 ~~~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
.+++....++++++++.++-..++.+. ...-|++.+.|.--.+
T Consensus 133 ~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 133 SSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHH
Confidence 334444458999999999988887766 5666777777655444
No 157
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.21 Score=39.57 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=29.7
Q ss_pred ceEeecCCChhhhHHHHHHH-------HHHHHHHHcCCChHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-------LAQTVAKKCVGLPLALI 141 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-------~~~~i~~~c~g~PLal~ 141 (180)
..+.+.+++.+++.+.+.+. .+..++..++|.|+...
T Consensus 158 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~la~Gsp~~A~ 201 (328)
T PRK05707 158 QQQACPLPSNEESLQWLQQALPESDERERIELLTLAGGSPLRAL 201 (328)
T ss_pred eeeeCCCcCHHHHHHHHHHhcccCChHHHHHHHHHcCCCHHHHH
Confidence 57889999999999888774 35677889999997443
No 158
>PRK14974 cell division protein FtsY; Provisional
Probab=95.92 E-value=0.04 Score=43.73 Aligned_cols=85 Identities=16% Similarity=0.109 Sum_probs=43.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHH-HHHHHHhCCCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKA-LEIFRFLSKKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~-~~l~~~L~~k~~ 78 (180)
++|+||||++..+++.+. ...+. +..+.... .....+-+....+.++.+-.......++.... +.+...-....=
T Consensus 148 ~~GvGKTTtiakLA~~l~--~~g~~-V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~~~D 224 (336)
T PRK14974 148 VNGTGKTTTIAKLAYYLK--KNGFS-VVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKARGID 224 (336)
T ss_pred CCCCCHHHHHHHHHHHHH--HcCCe-EEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhCCCC
Confidence 579999998888887753 22332 33343221 12333445666777765411112223333322 323332222233
Q ss_pred EEEEeCCCCc
Q 046006 79 VLLLDDKWER 88 (180)
Q Consensus 79 LlVlDdv~~~ 88 (180)
++++|.+-..
T Consensus 225 vVLIDTaGr~ 234 (336)
T PRK14974 225 VVLIDTAGRM 234 (336)
T ss_pred EEEEECCCcc
Confidence 8889988654
No 159
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.91 E-value=0.034 Score=39.81 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=25.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEI 44 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 44 (180)
.||+|||+||.+++.... ..=..++|++... +..++.+.
T Consensus 7 ~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 7 GPGTGKTTFALQFLYAGL---ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CCCCCHHHHHHHHHHHHH---HCCCcEEEEECCC--CHHHHHHH
Confidence 489999999999887742 2224567776654 34444433
No 160
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.90 E-value=0.022 Score=43.81 Aligned_cols=87 Identities=15% Similarity=0.159 Sum_probs=50.6
Q ss_pred CCCcHHHHHHHHHccccc-ccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCC---CCCCcChH------HHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLV-SSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDGD---SWKNKNSE------EKALEIF 70 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~-~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~~------~~~~~l~ 70 (180)
.|+|||+|+..+.++... .+.+-+.++++-+++.. ...++..++...=..+..- .....+.. -..-.+.
T Consensus 78 ~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiA 157 (276)
T cd01135 78 SGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIITPRMALTTA 157 (276)
T ss_pred CCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 589999999998887310 11234678888888765 5666666665532211000 01111111 1223455
Q ss_pred HHhC---CCcEEEEEeCCCCc
Q 046006 71 RFLS---KKKFVLLLDDKWER 88 (180)
Q Consensus 71 ~~L~---~k~~LlVlDdv~~~ 88 (180)
++++ ++++|+++||+-..
T Consensus 158 Eyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 158 EYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHhccCCeEEEEEcChhHH
Confidence 5552 68999999998654
No 161
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.13 Score=44.26 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=27.3
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL 138 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL 138 (180)
..+++.+++.++....+.+. .+..|++.++|..-
T Consensus 179 ~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 179 QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMR 223 (620)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH
Confidence 57889999999988777753 67889999999554
No 162
>PRK08149 ATP synthase SpaL; Validated
Probab=95.88 E-value=0.036 Score=45.36 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=47.3
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCC---CCCCCcCh------HHHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDG---DSWKNKNS------EEKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~------~~~~~~l~~ 71 (180)
+|+|||||...++... .-+.++...+... ....++............. ......+. ......+.+
T Consensus 160 sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~tiAE 234 (428)
T PRK08149 160 AGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVATTVAE 234 (428)
T ss_pred CCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHHHHHH
Confidence 6999999999998872 3345555555544 3566666666654322100 00111111 122333444
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++++||++||+-..
T Consensus 235 ~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 235 YFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHcCCCEEEEccchHHH
Confidence 44 589999999998654
No 163
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.19 Score=43.28 Aligned_cols=36 Identities=17% Similarity=0.089 Sum_probs=28.5
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
.++++.+++.++....+.+. .+..|++.++|..--+
T Consensus 173 ~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 173 QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 57889999999998888764 5778999999866433
No 164
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.86 E-value=0.28 Score=38.22 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=29.0
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..++++++++++....+... ....+++.++|.+--+
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 36788999999988887765 6888999999887653
No 165
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.036 Score=44.58 Aligned_cols=82 Identities=21% Similarity=0.224 Sum_probs=45.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
++|+||||++..++..+. .+.....+..++... .....+-+....+.++.+ .. ...+..++...+ ..+.++ -+
T Consensus 145 ptGvGKTTtiakLA~~~~-~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~-~~--~~~~~~~l~~~l-~~l~~~-Dl 218 (374)
T PRK14722 145 PTGVGKTTTTAKLAARCV-MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP-VH--AVKDGGDLQLAL-AELRNK-HM 218 (374)
T ss_pred CCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecccccccHHHHHHHHHHHcCCc-eE--ecCCcccHHHHH-HHhcCC-CE
Confidence 479999999999988742 111123455555433 345556667777777765 11 112222333333 334454 45
Q ss_pred EEEeCCCCc
Q 046006 80 LLLDDKWER 88 (180)
Q Consensus 80 lVlDdv~~~ 88 (180)
+++|..-..
T Consensus 219 VLIDTaG~~ 227 (374)
T PRK14722 219 VLIDTIGMS 227 (374)
T ss_pred EEEcCCCCC
Confidence 568887543
No 166
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=95.83 E-value=0.049 Score=41.87 Aligned_cols=82 Identities=11% Similarity=0.192 Sum_probs=44.1
Q ss_pred CCCcHHHHH-HHHHcccccccCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHH
Q 046006 2 GGVGKTTLL-THINNKFLVSSTDFDCV-IWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEI 69 (180)
Q Consensus 2 gGiGKTtLA-~~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l 69 (180)
+|+|||+|| ..+.++ .+-+.+ +++-+++.. ...++.+++...=..... ......+... ..-.+
T Consensus 78 ~g~GKt~L~l~~i~~~-----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~ai 152 (274)
T cd01132 78 RQTGKTAIAIDTIINQ-----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAM 152 (274)
T ss_pred CCCCccHHHHHHHHHh-----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHH
Confidence 579999996 455554 233445 666677654 456666666543211100 0011111111 12333
Q ss_pred HHHh--CCCcEEEEEeCCCCc
Q 046006 70 FRFL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 70 ~~~L--~~k~~LlVlDdv~~~ 88 (180)
.+++ +++.+|+++||+-..
T Consensus 153 AE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 153 GEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHCCCCEEEEEcChHHH
Confidence 4444 588999999998654
No 167
>PTZ00185 ATPase alpha subunit; Provisional
Probab=95.82 E-value=0.06 Score=45.04 Aligned_cols=86 Identities=13% Similarity=0.126 Sum_probs=48.4
Q ss_pred CCCcHHHHH-HHHHcccccc-----cCCCCeEEEEEeCCCCCHHHHHHHHHHHhC-CCCCC---CCCCcChHH------H
Q 046006 2 GGVGKTTLL-THINNKFLVS-----STDFDCVIWIVVSKDLQLEKIQEIVGKKVG-LLDGD---SWKNKNSEE------K 65 (180)
Q Consensus 2 gGiGKTtLA-~~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~~---~~~~~~~~~------~ 65 (180)
.|+|||+|| -.+.++- .+ .++-+.++++-+++..+...-+.+.++.-+ ....- .....+... .
T Consensus 198 ~GtGKTtLAld~IinQ~-~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~r~~Apy~ 276 (574)
T PTZ00185 198 RQTGKTSIAVSTIINQV-RINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGLQYLAPYS 276 (574)
T ss_pred CCCChHHHHHHHHHhhh-hhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHHHHHHHHH
Confidence 599999997 5567762 11 123457788889887654444555555544 11000 001111111 1
Q ss_pred HHHHHHHh--CCCcEEEEEeCCCCc
Q 046006 66 ALEIFRFL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 66 ~~~l~~~L--~~k~~LlVlDdv~~~ 88 (180)
.-.+.+++ +++..|+|+||+-..
T Consensus 277 a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 277 GVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHcCCCEEEEEcCchHH
Confidence 23344444 588999999998764
No 168
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.81 E-value=0.011 Score=43.35 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=42.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHH-HHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLE-KIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
.+|+||||++..+..... ......++.. ..+.... .-...+..+-. . ..+.....+.++..|+..+=.
T Consensus 9 ptGSGKTTll~~ll~~~~---~~~~~~i~t~-e~~~E~~~~~~~~~i~q~~------v-g~~~~~~~~~i~~aLr~~pd~ 77 (198)
T cd01131 9 PTGSGKSTTLAAMIDYIN---KNKTHHILTI-EDPIEFVHESKRSLINQRE------V-GLDTLSFENALKAALRQDPDV 77 (198)
T ss_pred CCCCCHHHHHHHHHHHhh---hcCCcEEEEE-cCCccccccCccceeeecc------c-CCCccCHHHHHHHHhcCCcCE
Confidence 369999999998877742 2333444432 1111100 00000111100 0 112233556677888777889
Q ss_pred EEEeCCCCcccc
Q 046006 80 LLLDDKWERVDL 91 (180)
Q Consensus 80 lVlDdv~~~~~l 91 (180)
+++|++.+.+.+
T Consensus 78 ii~gEird~e~~ 89 (198)
T cd01131 78 ILVGEMRDLETI 89 (198)
T ss_pred EEEcCCCCHHHH
Confidence 999999766543
No 169
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.78 E-value=0.09 Score=43.88 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=23.4
Q ss_pred ceEeecCCChhhhHHHHHHH------------HHHHHHHHcCCC
Q 046006 105 KNFKVECLSDNDAWELLRQK------------LAQTVAKKCVGL 136 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~------------~~~~i~~~c~g~ 136 (180)
..+.++..+.++-.++|..+ ....+++.+.|.
T Consensus 385 ~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~Gf 428 (489)
T CHL00195 385 EIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKF 428 (489)
T ss_pred eEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCC
Confidence 46778878888888888876 245677777665
No 170
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=95.77 E-value=0.078 Score=43.57 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=47.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~ 71 (180)
+|+|||||++.+++.. ..+.+++.-+++.. ...++..+.+..-+.+.. ......+.. ...-.+.+
T Consensus 167 sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~tiAE 241 (442)
T PRK08927 167 SGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTLAIAE 241 (442)
T ss_pred CCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998873 23556666676654 444555555443222100 001111111 12233445
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++.+|+++||+-..
T Consensus 242 yfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 242 YFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHCCCcEEEEEeCcHHH
Confidence 55 588999999998653
No 171
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.77 E-value=0.042 Score=43.66 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.+.+.+
T Consensus 7 l~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 7 LPAAGKSTLARSLSATL 23 (340)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999875
No 172
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.75 E-value=0.014 Score=49.22 Aligned_cols=84 Identities=25% Similarity=0.276 Sum_probs=45.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEE-EeCCCC-CHHHHHHHHHHHhCCCCCCCCCC---cChHHHHHHHHHHh--
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWI-VVSKDL-QLEKIQEIVGKKVGLLDGDSWKN---KNSEEKALEIFRFL-- 73 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv-~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~~~l~~~L-- 73 (180)
.+|+|||||++.+++.. ..++-++.+++ -+++.. .+.++.+.+-..+-.. ..+.+. .....+.-.+.+++
T Consensus 424 pp~aGKTtLL~~IAn~i--~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVas-T~D~p~~~~~~~a~~ai~~Ae~fre 500 (672)
T PRK12678 424 PPKAGKTTILQNIANAI--TTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIAS-TFDRPPSDHTTVAELAIERAKRLVE 500 (672)
T ss_pred CCCCCHHHHHHHHHHHH--hhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEE-CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999974 22444555444 355544 3444433331111111 001111 01122333445555
Q ss_pred CCCcEEEEEeCCCC
Q 046006 74 SKKKFVLLLDDKWE 87 (180)
Q Consensus 74 ~~k~~LlVlDdv~~ 87 (180)
.++.+||++|++-.
T Consensus 501 ~G~dVlillDSlTR 514 (672)
T PRK12678 501 LGKDVVVLLDSITR 514 (672)
T ss_pred cCCCEEEEEeCchH
Confidence 58999999999864
No 173
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=95.75 E-value=0.035 Score=45.66 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHHcccccccC--CCC---------eEEEEEeCCCCCHHHHHHHHHHHhC-CCCC---CCCCCcCh-H--
Q 046006 2 GGVGKTTLLTHINNKFLVSST--DFD---------CVIWIVVSKDLQLEKIQEIVGKKVG-LLDG---DSWKNKNS-E-- 63 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~--~f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~~~---~~~~~~~~-~-- 63 (180)
+|+|||+|+..+.++. .... -.| .+++.-+++.....+.+...+..-+ .... ......+. .
T Consensus 150 sGvGKs~L~~~i~~~~-~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd~p~~~R~ 228 (466)
T TIGR01040 150 AGLPHNEIAAQICRQA-GLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLANDPTIERI 228 (466)
T ss_pred CCCCHHHHHHHHHHhh-ccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 5999999999998873 2100 012 5677778888777776766666655 2100 00111111 1
Q ss_pred ---HHHHHHHHHhC---CCcEEEEEeCCCCc
Q 046006 64 ---EKALEIFRFLS---KKKFVLLLDDKWER 88 (180)
Q Consensus 64 ---~~~~~l~~~L~---~k~~LlVlDdv~~~ 88 (180)
-..-.+.++++ ++++|+++||+-..
T Consensus 229 ~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 229 ITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred HHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 12233556665 68999999998643
No 174
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.72 E-value=0.05 Score=40.52 Aligned_cols=30 Identities=37% Similarity=0.446 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
+|+|||+||.+++.... ..-..++|++...
T Consensus 29 ~G~GKT~l~~~~~~~~~---~~g~~~~~is~e~ 58 (229)
T TIGR03881 29 PGTGKTIFCLHFAYKGL---RDGDPVIYVTTEE 58 (229)
T ss_pred CCCChHHHHHHHHHHHH---hcCCeEEEEEccC
Confidence 79999999998876522 2235678887644
No 175
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.045 Score=41.62 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
++|.|||-||+.++++
T Consensus 189 ppgtGktLlaraVahh 204 (404)
T KOG0728|consen 189 PPGTGKTLLARAVAHH 204 (404)
T ss_pred CCCCchhHHHHHHHhh
Confidence 4899999999999988
No 176
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.71 E-value=0.043 Score=43.19 Aligned_cols=87 Identities=14% Similarity=0.145 Sum_probs=48.2
Q ss_pred CCCCcHHHHHHHHHccc--ccccC-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcChHHH---HHH
Q 046006 1 MGGVGKTTLLTHINNKF--LVSST-DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKNSEEK---ALE 68 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~--~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~---~~~ 68 (180)
.+|+|||+||..++... ..... .-..++|++....++... +..+++.++..... .....+.++. ...
T Consensus 104 ~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~ 182 (316)
T TIGR02239 104 EFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNTDHQLQLLQQ 182 (316)
T ss_pred CCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCChHHHHHHHHH
Confidence 37999999999987531 10011 113568998877777765 34455655543110 0011233333 333
Q ss_pred HHHHh-CCCcEEEEEeCCCCc
Q 046006 69 IFRFL-SKKKFVLLLDDKWER 88 (180)
Q Consensus 69 l~~~L-~~k~~LlVlDdv~~~ 88 (180)
+...+ ..+.-|+|+|.+...
T Consensus 183 ~~~~~~~~~~~LvVIDSI~al 203 (316)
T TIGR02239 183 AAAMMSESRFALLIVDSATAL 203 (316)
T ss_pred HHHhhccCCccEEEEECcHHH
Confidence 33334 345679999997543
No 177
>PRK06217 hypothetical protein; Validated
Probab=95.71 E-value=0.019 Score=41.41 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=20.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCC--CeEEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDF--DCVIWI 30 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f--~~~~wv 30 (180)
++|+||||+|+.+...+. ..++ |..+|.
T Consensus 9 ~~GsGKSTla~~L~~~l~--~~~~~~D~~~~~ 38 (183)
T PRK06217 9 ASGSGTTTLGAALAERLD--IPHLDTDDYFWL 38 (183)
T ss_pred CCCCCHHHHHHHHHHHcC--CcEEEcCceeec
Confidence 479999999999998853 1233 455664
No 178
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.19 Score=40.87 Aligned_cols=30 Identities=20% Similarity=0.136 Sum_probs=24.4
Q ss_pred ccccccccccceEeecCCChhhhHHHHHHH
Q 046006 95 LFVCGLVEANKNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 95 ~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~ 124 (180)
.++.+++...-++++.+++.+....++.+.
T Consensus 227 ~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 227 DRLRSRLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred HHHHHHHhceeEEeeCCCCHHHHHHHHHHH
Confidence 456666666678999999999999998886
No 179
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.11 Score=44.81 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=59.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
+||+|||+|++.++.-+. +.| +=++++.-.+..++- .. .+..-..-+...++.+++. ..++=++
T Consensus 358 PPGVGKTSLgkSIA~al~---Rkf---vR~sLGGvrDEAEIR--------GH-RRTYIGamPGrIiQ~mkka-~~~NPv~ 421 (782)
T COG0466 358 PPGVGKTSLGKSIAKALG---RKF---VRISLGGVRDEAEIR--------GH-RRTYIGAMPGKIIQGMKKA-GVKNPVF 421 (782)
T ss_pred CCCCCchhHHHHHHHHhC---CCE---EEEecCccccHHHhc--------cc-cccccccCChHHHHHHHHh-CCcCCeE
Confidence 689999999999998853 333 113344333333331 11 1111122344444444443 3345588
Q ss_pred EEeCCCCccccccc----------------------------------cccccc--------ccccceEeecCCChhhhH
Q 046006 81 LLDDKWERVDLNKG----------------------------------LFVCGL--------VEANKNFKVECLSDNDAW 118 (180)
Q Consensus 81 VlDdv~~~~~l~~g----------------------------------~~~~~~--------~~~~~~~~l~~L~~~~a~ 118 (180)
+||.++....--.| -.-++. +....++++.+-+++|=.
T Consensus 422 LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl 501 (782)
T COG0466 422 LLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKL 501 (782)
T ss_pred EeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHH
Confidence 89999876321111 001111 122357889999999998
Q ss_pred HHHHHH
Q 046006 119 ELLRQK 124 (180)
Q Consensus 119 ~Lf~~~ 124 (180)
++-.++
T Consensus 502 ~IAk~~ 507 (782)
T COG0466 502 EIAKRH 507 (782)
T ss_pred HHHHHh
Confidence 888877
No 180
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.68 E-value=0.24 Score=43.23 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=29.9
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~ 143 (180)
..+++.+++.++..+.+... .+..|++.++|.+- |+..+
T Consensus 170 q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 170 QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 57889999999998888764 57789999998764 44433
No 181
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=95.66 E-value=0.036 Score=46.08 Aligned_cols=82 Identities=15% Similarity=0.160 Sum_probs=47.5
Q ss_pred CCCcHHHHHH-HHHcccccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcCh-HH-----HHHHH
Q 046006 2 GGVGKTTLLT-HINNKFLVSSTDFDC-VIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNS-EE-----KALEI 69 (180)
Q Consensus 2 gGiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~-~~-----~~~~l 69 (180)
.|+|||+||. .+.++ ..-+. ++++-+++.. ...++.+.+...=..+.. ......+. .+ ....+
T Consensus 171 ~g~GKT~Lal~~I~~q-----~~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~ap~~a~ai 245 (497)
T TIGR03324 171 RQTGKTAIAIDTILNQ-----KGRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIAPYAATSI 245 (497)
T ss_pred CCCCHHHHHHHHHHHh-----cCCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4999999974 67776 23354 6788888765 556666666554222100 00111111 11 12334
Q ss_pred HHHh--CCCcEEEEEeCCCCc
Q 046006 70 FRFL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 70 ~~~L--~~k~~LlVlDdv~~~ 88 (180)
.+++ +++.+|+|+||+...
T Consensus 246 AEyfrd~G~~VLlv~DdlTr~ 266 (497)
T TIGR03324 246 GEHFMEQGRDVLIVYDDLTQH 266 (497)
T ss_pred HHHHHhCCCCEEEEEcChhHH
Confidence 5555 588999999998654
No 182
>PRK03839 putative kinase; Provisional
Probab=95.65 E-value=0.0063 Score=43.63 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=15.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
|+|+||||+|+.+++.+
T Consensus 8 ~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 8 TPGVGKTTVSKLLAEKL 24 (180)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999999985
No 183
>PRK05973 replicative DNA helicase; Provisional
Probab=95.65 E-value=0.081 Score=39.91 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=25.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIV 45 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 45 (180)
.||+|||++|.+++.... ++ -..+++++...+ ..++...+
T Consensus 72 ~PG~GKT~lalqfa~~~a--~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 72 RPGHGKTLLGLELAVEAM--KS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCCCHHHHHHHHHHHHH--hc-CCeEEEEEEeCC--HHHHHHHH
Confidence 379999999999887632 22 234666665543 44555444
No 184
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.64 E-value=0.067 Score=44.19 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l~~ 71 (180)
+|+|||||+..+..... .++-+.++++-+++.. ...++++++...=..+.. ......+... ..-.+.+
T Consensus 153 ~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAE 230 (463)
T PRK09280 153 AGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAE 230 (463)
T ss_pred CCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 69999999998877632 1222467777777654 566667666653221100 0111121221 2334556
Q ss_pred Hh---CCCcEEEEEeCCCCc
Q 046006 72 FL---SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L---~~k~~LlVlDdv~~~ 88 (180)
++ +++.+||++||+-..
T Consensus 231 yfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 231 YFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHhcCCceEEEecchHHH
Confidence 66 578999999998653
No 185
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.07 Score=46.44 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=37.4
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-CCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-SKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~L 79 (180)
+||+|||-||++|+...+ .-|+++..+ +++... ...-++-.+.+.+.- ..++|.
T Consensus 713 PPGTGKTLlAKAVATEcs--------L~FlSVKGP--------ELLNMY---------VGqSE~NVR~VFerAR~A~PCV 767 (953)
T KOG0736|consen 713 PPGTGKTLLAKAVATECS--------LNFLSVKGP--------ELLNMY---------VGQSEENVREVFERARSAAPCV 767 (953)
T ss_pred CCCCchHHHHHHHHhhce--------eeEEeecCH--------HHHHHH---------hcchHHHHHHHHHHhhccCCeE
Confidence 589999999999998842 234444321 111111 011233333344443 357999
Q ss_pred EEEeCCCCcc
Q 046006 80 LLLDDKWERV 89 (180)
Q Consensus 80 lVlDdv~~~~ 89 (180)
|.||++++..
T Consensus 768 IFFDELDSlA 777 (953)
T KOG0736|consen 768 IFFDELDSLA 777 (953)
T ss_pred EEeccccccC
Confidence 9999998763
No 186
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.63 E-value=0.065 Score=44.10 Aligned_cols=85 Identities=21% Similarity=0.285 Sum_probs=51.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~ 71 (180)
+|+|||+|+..+..... ..+-+.++++-+++.. ...++.+++...=..+.. ......+.. ...-.+.+
T Consensus 147 ~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~tiAE 224 (449)
T TIGR03305 147 AGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHTALTMAE 224 (449)
T ss_pred CCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 69999999999987732 2334788888887765 455666665543211100 001111111 12344556
Q ss_pred HhC---CCcEEEEEeCCCCc
Q 046006 72 FLS---KKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L~---~k~~LlVlDdv~~~ 88 (180)
+++ ++++|+++||+-..
T Consensus 225 yfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 225 YFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHhcCCceEEEecChHHH
Confidence 654 68999999998654
No 187
>PRK06936 type III secretion system ATPase; Provisional
Probab=95.62 E-value=0.038 Score=45.29 Aligned_cols=82 Identities=22% Similarity=0.276 Sum_probs=47.7
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l~~ 71 (180)
+|+|||||.+.+++.. .-+.+++.-+++.. ...++....+..-+.+.. ......+... ..-.+.+
T Consensus 171 sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAE 245 (439)
T PRK06936 171 AGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAE 245 (439)
T ss_pred CCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999883 33667777777654 455555444433221100 0111122211 1223444
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++++|+++||+-..
T Consensus 246 yfrd~G~~Vll~~DslTR~ 264 (439)
T PRK06936 246 YFRDQGKRVLLLMDSVTRF 264 (439)
T ss_pred HHHHcCCCEEEeccchhHH
Confidence 44 589999999998754
No 188
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.61 E-value=0.021 Score=44.80 Aligned_cols=74 Identities=16% Similarity=0.084 Sum_probs=44.4
Q ss_pred CCCCcHHHHHHHHHccccccc--CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCC--
Q 046006 1 MGGVGKTTLLTHINNKFLVSS--TDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKK-- 76 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k-- 76 (180)
+||.|||+|++.+++.+. ++ +.|....-+.++. ..++...-. ....-+..+.+++.+.+.++
T Consensus 185 PPGTGKTSLCKaLaQkLS-IR~~~~y~~~~liEins--------hsLFSKWFs-----ESgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLS-IRTNDRYYKGQLIEINS--------HSLFSKWFS-----ESGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred CCCCChhHHHHHHHHhhe-eeecCccccceEEEEeh--------hHHHHHHHh-----hhhhHHHHHHHHHHHHHhCCCc
Confidence 689999999999999974 33 2333333333321 223333211 12344667777788888655
Q ss_pred cEEEEEeCCCCc
Q 046006 77 KFVLLLDDKWER 88 (180)
Q Consensus 77 ~~LlVlDdv~~~ 88 (180)
-+.+.+|+|.+.
T Consensus 251 lVfvLIDEVESL 262 (423)
T KOG0744|consen 251 LVFVLIDEVESL 262 (423)
T ss_pred EEEEEeHHHHHH
Confidence 455677888764
No 189
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.60 E-value=0.023 Score=46.82 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhCCCcEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
+|+|||||+.+++.... ..-..++|++..++ ..++... ++.++..... .....+.+++...+. +.+.-+
T Consensus 89 pG~GKTtL~lq~a~~~a---~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~---~~~~~l 159 (446)
T PRK11823 89 PGIGKSTLLLQVAARLA---AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE---EEKPDL 159 (446)
T ss_pred CCCCHHHHHHHHHHHHH---hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH---hhCCCE
Confidence 79999999999988753 12235677775443 3343322 4555542110 011234444444432 245668
Q ss_pred EEEeCCCCc
Q 046006 80 LLLDDKWER 88 (180)
Q Consensus 80 lVlDdv~~~ 88 (180)
+|+|.+...
T Consensus 160 VVIDSIq~l 168 (446)
T PRK11823 160 VVIDSIQTM 168 (446)
T ss_pred EEEechhhh
Confidence 999998643
No 190
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.58 E-value=0.16 Score=38.77 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=29.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK 48 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 48 (180)
.+|+|||+++.+++.... ..+-..++|++... +..++...+...
T Consensus 38 ~~G~GKT~l~~~~~~~~~--~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 38 GTGVGKTTFLREYALDLI--TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCCCCHHHHHHHHHHHHH--HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 379999999999988742 23234677887654 445555555544
No 191
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.57 E-value=0.32 Score=41.08 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=30.1
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALIT 142 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~ 142 (180)
..+++.+++.++..+.+.+. .+..|++.++|.+--+..
T Consensus 169 ~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 169 QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLT 217 (535)
T ss_pred eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 57889999999998888765 677899999998854433
No 192
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.57 E-value=0.026 Score=38.52 Aligned_cols=36 Identities=33% Similarity=0.281 Sum_probs=25.4
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQ 42 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 42 (180)
.+|+|||+||+.+++.+. ....-++++...+..++.
T Consensus 7 ~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 7 PPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLI 42 (139)
T ss_dssp SSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHH
T ss_pred CCCCCHHHHHHHHHHHhh------cceEEEEeccccccccce
Confidence 479999999999998851 123345677777777665
No 193
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.55 E-value=0.073 Score=41.01 Aligned_cols=85 Identities=19% Similarity=0.125 Sum_probs=43.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCcChHH-HHHHHHHHhCCCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNKNSEE-KALEIFRFLSKKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~l~~~L~~k~~ 78 (180)
++|+||||++..++..+. ..-..+..++.... ....+-+....+..+.+-.......++.. ....+.....+..=
T Consensus 80 ~~G~GKTTt~akLA~~l~---~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~~~D 156 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLK---KQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKARNID 156 (272)
T ss_pred CCCCcHHHHHHHHHHHHH---hcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 489999999999988753 22224555554431 12233344445555432000111222322 23444444445556
Q ss_pred EEEEeCCCCc
Q 046006 79 VLLLDDKWER 88 (180)
Q Consensus 79 LlVlDdv~~~ 88 (180)
++++|-.-..
T Consensus 157 ~ViIDT~G~~ 166 (272)
T TIGR00064 157 VVLIDTAGRL 166 (272)
T ss_pred EEEEeCCCCC
Confidence 7888876543
No 194
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.54 E-value=0.076 Score=38.57 Aligned_cols=78 Identities=12% Similarity=0.049 Sum_probs=40.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCC---eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFD---CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~---~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~ 77 (180)
.+|+||||+|+.+...+.. .... ....++.............--..-..-....+..-+.+.+.+.+....+++.
T Consensus 7 ~sgSGKTTla~~L~~~L~~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~~g~~ 84 (194)
T PF00485_consen 7 PSGSGKTTLAKRLAQILNK--RGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALKNGGS 84 (194)
T ss_dssp STTSSHHHHHHHHHHHHTT--CTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHhCc--cCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHhCCCc
Confidence 4799999999999988631 2222 2334443333322222222111100100123445677777777777666665
Q ss_pred EEE
Q 046006 78 FVL 80 (180)
Q Consensus 78 ~Ll 80 (180)
.-+
T Consensus 85 i~~ 87 (194)
T PF00485_consen 85 IEI 87 (194)
T ss_dssp EEE
T ss_pred ccc
Confidence 444
No 195
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.54 E-value=0.31 Score=40.77 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=29.7
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~ 143 (180)
..+++.+++.++-...+.+. .+..|++.++|.+..+...
T Consensus 171 ~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 171 QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 46888999999988887775 5778888999976644433
No 196
>PTZ00035 Rad51 protein; Provisional
Probab=95.53 E-value=0.12 Score=41.07 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=47.7
Q ss_pred CCCCcHHHHHHHHHcccccc--cC-CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC------CCCCcChHHHHHHH--
Q 046006 1 MGGVGKTTLLTHINNKFLVS--ST-DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD------SWKNKNSEEKALEI-- 69 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~--~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~~l-- 69 (180)
.+|+|||+|+..++-..... .. .-..++|++-...++...+ ..+++.++..... .....+.++....+
T Consensus 126 ~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~ 204 (337)
T PTZ00035 126 EFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQ 204 (337)
T ss_pred CCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCHHHHHHHHHH
Confidence 37999999999987542100 01 1234668887776776663 4455665543100 01123334444333
Q ss_pred -HHHh-CCCcEEEEEeCCCC
Q 046006 70 -FRFL-SKKKFVLLLDDKWE 87 (180)
Q Consensus 70 -~~~L-~~k~~LlVlDdv~~ 87 (180)
...+ ..+--|+|+|.+..
T Consensus 205 ~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 205 AAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHhhccCccEEEEECcHH
Confidence 3333 34567999999854
No 197
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=95.51 E-value=0.051 Score=44.56 Aligned_cols=82 Identities=23% Similarity=0.257 Sum_probs=45.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcC-hHH-----HHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKN-SEE-----KALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~-----~~~~l~~ 71 (180)
+|+|||||.+.+++.. +.+..++..+++.. ...+++.+....=..... ......+ ... ..-.+.+
T Consensus 164 sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAE 238 (433)
T PRK07594 164 PGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAE 238 (433)
T ss_pred CCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998773 34555666666543 444555554321100000 0001111 111 1233445
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++++|+++||+-..
T Consensus 239 yfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 239 FFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHCCCcEEEEEeCHHHH
Confidence 55 588999999998754
No 198
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=95.50 E-value=0.055 Score=44.68 Aligned_cols=86 Identities=13% Similarity=0.144 Sum_probs=48.2
Q ss_pred CCCcHHHHHHHHHcccccccCCC--CeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcCh-H-----HHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDF--DCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNS-E-----EKALEI 69 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f--~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~-~-----~~~~~l 69 (180)
.|+|||+|+..+.++- ...+.+ ..++++-+++.. ...+++..+...=..+.. ......+. . -....+
T Consensus 150 ~G~GKs~L~~~ia~~~-~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a~~~a~ti 228 (458)
T TIGR01041 150 SGLPHNELAAQIARQA-TVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVTPRMALTA 228 (458)
T ss_pred CCCCHHHHHHHHHHhh-cccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5999999999998872 221111 156666677654 556666666543222100 00111111 1 123345
Q ss_pred HHHhC---CCcEEEEEeCCCCc
Q 046006 70 FRFLS---KKKFVLLLDDKWER 88 (180)
Q Consensus 70 ~~~L~---~k~~LlVlDdv~~~ 88 (180)
.++++ ++++||++||+-..
T Consensus 229 AEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 229 AEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHccCCcEEEEEcChhHH
Confidence 56664 67999999998653
No 199
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=95.50 E-value=0.081 Score=39.74 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=24.8
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQ 42 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 42 (180)
||+||||+|..++..+. . ..+ .++-++.....+.....
T Consensus 11 GGvGKTT~a~nLA~~la-~-~G~-~VlliD~DpQ~s~~~w~ 48 (231)
T PRK13849 11 GGAGKTTALMGLCAALA-S-DGK-RVALFEADENRPLTRWK 48 (231)
T ss_pred CCccHHHHHHHHHHHHH-h-CCC-cEEEEeCCCCCCHHHHH
Confidence 89999999999988863 2 222 34556665555544443
No 200
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.49 E-value=0.0094 Score=40.78 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+....
T Consensus 7 ~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 58999999999998773
No 201
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.011 Score=45.13 Aligned_cols=60 Identities=22% Similarity=0.191 Sum_probs=36.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh---C-CC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL---S-KK 76 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L---~-~k 76 (180)
++|.|||-+|++++|+- ..+|+.+- -.++.+. .+.+.++.+++.+ + .|
T Consensus 219 ppgtgktl~aravanrt--------dacfirvi--------gselvqk------------yvgegarmvrelf~martkk 270 (435)
T KOG0729|consen 219 PPGTGKTLCARAVANRT--------DACFIRVI--------GSELVQK------------YVGEGARMVRELFEMARTKK 270 (435)
T ss_pred CCCCchhHHHHHHhccc--------CceEEeeh--------hHHHHHH------------HhhhhHHHHHHHHHHhcccc
Confidence 58999999999999983 13333321 1122222 2334444444444 4 46
Q ss_pred cEEEEEeCCCCc
Q 046006 77 KFVLLLDDKWER 88 (180)
Q Consensus 77 ~~LlVlDdv~~~ 88 (180)
-|++.||.++..
T Consensus 271 aciiffdeidai 282 (435)
T KOG0729|consen 271 ACIIFFDEIDAI 282 (435)
T ss_pred eEEEEeeccccc
Confidence 799999998764
No 202
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.48 E-value=0.083 Score=46.38 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=23.7
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
..+.++..+.++-.+++... ....+++.+.|.-
T Consensus 339 ~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~ 381 (733)
T TIGR01243 339 REIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFV 381 (733)
T ss_pred EEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCC
Confidence 35667777888888888765 3667888887764
No 203
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.46 E-value=0.1 Score=39.18 Aligned_cols=44 Identities=18% Similarity=0.294 Sum_probs=26.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVG 50 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 50 (180)
.+|+||||||.+++.... ++. ..+++++ ...+..++++.+ ++++
T Consensus 32 ~~G~GKTtl~~~~~~~~~--~~g-~~~~yi~--~e~~~~~~~~~~-~~~g 75 (230)
T PRK08533 32 DESTGKSILSQRLAYGFL--QNG-YSVSYVS--TQLTTTEFIKQM-MSLG 75 (230)
T ss_pred CCCCCHHHHHHHHHHHHH--hCC-CcEEEEe--CCCCHHHHHHHH-HHhC
Confidence 379999999987776532 122 3456665 333556666665 3444
No 204
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.46 E-value=0.048 Score=43.17 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=19.5
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV 31 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~ 31 (180)
+|+|||.||..+++.+ ....+ .+++++
T Consensus 192 ~GtGKThLa~aIa~~l--~~~g~-~V~y~t 218 (329)
T PRK06835 192 TGTGKTFLSNCIAKEL--LDRGK-SVIYRT 218 (329)
T ss_pred CCCcHHHHHHHHHHHH--HHCCC-eEEEEE
Confidence 6999999999999985 22333 455554
No 205
>PRK08233 hypothetical protein; Provisional
Probab=95.43 E-value=0.0095 Score=42.53 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||||..++..+
T Consensus 11 ~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 11 VSGGGKTTLTERLTHKL 27 (182)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 47999999999999876
No 206
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.43 E-value=0.0096 Score=42.01 Aligned_cols=18 Identities=50% Similarity=0.634 Sum_probs=16.2
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
|||+||||+++.+.+.+.
T Consensus 13 ~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 13 RPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 699999999999998863
No 207
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.41 E-value=0.061 Score=44.86 Aligned_cols=81 Identities=14% Similarity=0.068 Sum_probs=49.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------------CCCCCcChHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG------------DSWKNKNSEEKALE 68 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------------~~~~~~~~~~~~~~ 68 (180)
.+|+|||||+.+++.... ..-..+++++..+ +..++.... +.++.+.. ..+...+.++....
T Consensus 271 ~~G~GKt~l~~~f~~~~~---~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~ 344 (484)
T TIGR02655 271 ATGTGKTLLVSKFLENAC---ANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQI 344 (484)
T ss_pred CCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCChHHHHHH
Confidence 489999999999988742 2234566665443 445555543 44443210 01122345777777
Q ss_pred HHHHhCC-CcEEEEEeCCCC
Q 046006 69 IFRFLSK-KKFVLLLDDKWE 87 (180)
Q Consensus 69 l~~~L~~-k~~LlVlDdv~~ 87 (180)
+++.+.. +.-.+|+|.+..
T Consensus 345 i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 345 IKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred HHHHHHHcCCCEEEEcCHHH
Confidence 7777753 566899998753
No 208
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.40 E-value=0.41 Score=41.31 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=27.9
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALIT 142 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~ 142 (180)
..+++..++.++....+.+. .+..|++.++|.+..+..
T Consensus 173 ~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 173 QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 46778888888887766653 677888899997764443
No 209
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.38 E-value=0.048 Score=44.91 Aligned_cols=85 Identities=14% Similarity=0.214 Sum_probs=49.8
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l~~ 71 (180)
+|+|||+|+..+.... ..++-+.++++-+++.. ...+++.++...=..+.. ......+... ..-.+.+
T Consensus 152 ~G~GKt~L~~~~~~~~--~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAE 229 (461)
T TIGR01039 152 AGVGKTVLIQELINNI--AKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALTGLTMAE 229 (461)
T ss_pred CCCChHHHHHHHHHHH--HhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999988763 22333467777777654 556676666543211100 0011122111 2334556
Q ss_pred Hh---CCCcEEEEEeCCCCc
Q 046006 72 FL---SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L---~~k~~LlVlDdv~~~ 88 (180)
++ +++.+||++||+-..
T Consensus 230 yfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 230 YFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHhcCCeeEEEecchhHH
Confidence 66 468999999998754
No 210
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.33 E-value=0.062 Score=47.15 Aligned_cols=80 Identities=15% Similarity=0.059 Sum_probs=51.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~ 77 (180)
.+|+||||||.+++.... ..-..++|+.....++. ..++.++.+... .....+.++....+.+.++ ++.
T Consensus 68 ~~GsGKTtLal~~~~~a~---~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~ 139 (790)
T PRK09519 68 PESSGKTTVALHAVANAQ---AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGAL 139 (790)
T ss_pred CCCCCHHHHHHHHHHHHH---HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 379999999988766522 22245788887766663 366777664111 1123445666666666664 467
Q ss_pred EEEEEeCCCCc
Q 046006 78 FVLLLDDKWER 88 (180)
Q Consensus 78 ~LlVlDdv~~~ 88 (180)
-|+|+|.+...
T Consensus 140 ~LVVIDSI~aL 150 (790)
T PRK09519 140 DIVVIDSVAAL 150 (790)
T ss_pred eEEEEcchhhh
Confidence 79999998643
No 211
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.31 E-value=0.048 Score=45.13 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC--CCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG--DSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
+|+|||||+.+++.... ..-..++|++..++ ..++.. -++.++.... .-....+.+++...+. +.+.-+
T Consensus 103 pGsGKTTL~lq~a~~~a---~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~---~~~~~~ 173 (454)
T TIGR00416 103 PGIGKSTLLLQVACQLA---KNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE---EENPQA 173 (454)
T ss_pred CCCCHHHHHHHHHHHHH---hcCCcEEEEECcCC--HHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH---hcCCcE
Confidence 79999999999987753 11134677765443 333322 2234443200 0112234444443332 235678
Q ss_pred EEEeCCCCc
Q 046006 80 LLLDDKWER 88 (180)
Q Consensus 80 lVlDdv~~~ 88 (180)
+|+|.+...
T Consensus 174 vVIDSIq~l 182 (454)
T TIGR00416 174 CVIDSIQTL 182 (454)
T ss_pred EEEecchhh
Confidence 999998643
No 212
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.028 Score=40.47 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.||+||||+|+.+.+.+
T Consensus 8 ~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 8 PPGAGKSTLAKKLAKKL 24 (178)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999999985
No 213
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.29 E-value=0.056 Score=44.44 Aligned_cols=83 Identities=18% Similarity=0.109 Sum_probs=42.7
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCCCCcCh-----HHHHHHHHHHh
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD---GDSWKNKNS-----EEKALEIFRFL 73 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~-----~~~~~~l~~~L 73 (180)
+|+|||||++.+.... ....+++++.-....++.++....+....... ....+.... ....-.+.+++
T Consensus 174 SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~iAEyf 249 (450)
T PRK06002 174 SGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAIAEYF 249 (450)
T ss_pred CCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999887662 22334555443233455554444433321100 000111111 11223344444
Q ss_pred --CCCcEEEEEeCCCCc
Q 046006 74 --SKKKFVLLLDDKWER 88 (180)
Q Consensus 74 --~~k~~LlVlDdv~~~ 88 (180)
+++.+|+++||+-..
T Consensus 250 rd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 250 RDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHcCCCEEEeccchHHH
Confidence 488999999998654
No 214
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.16 Score=43.97 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=39.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
+||+|||++|+.++.-+. +.+|. ++++.-.+..++- .. .+..-..-+...++.|++.=.. +=|+
T Consensus 446 PPGVGKTSI~kSIA~ALn--RkFfR----fSvGG~tDvAeIk--------GH-RRTYVGAMPGkiIq~LK~v~t~-NPli 509 (906)
T KOG2004|consen 446 PPGVGKTSIAKSIARALN--RKFFR----FSVGGMTDVAEIK--------GH-RRTYVGAMPGKIIQCLKKVKTE-NPLI 509 (906)
T ss_pred CCCCCcccHHHHHHHHhC--CceEE----EeccccccHHhhc--------cc-ceeeeccCChHHHHHHHhhCCC-CceE
Confidence 589999999999998863 22221 3445444444431 11 1111223344555555544333 4477
Q ss_pred EEeCCCCc
Q 046006 81 LLDDKWER 88 (180)
Q Consensus 81 VlDdv~~~ 88 (180)
.||.|+..
T Consensus 510 LiDEvDKl 517 (906)
T KOG2004|consen 510 LIDEVDKL 517 (906)
T ss_pred Eeehhhhh
Confidence 78988864
No 215
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.29 E-value=0.04 Score=44.99 Aligned_cols=82 Identities=23% Similarity=0.280 Sum_probs=44.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l~~ 71 (180)
+|+|||||.+.++... .. +..+...+++ .....++.+..+..-+.... ......+... ..-.+.+
T Consensus 149 sG~GKTtLl~~I~~~~----~~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAE 223 (418)
T TIGR03498 149 SGVGKSTLLSMLARNT----DA-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAE 223 (418)
T ss_pred CCCChHHHHHHHhCCC----CC-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999888773 22 3333333443 34455566655443222100 0011111111 2233555
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++.+|+++||+-..
T Consensus 224 yfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 224 YFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHcCCCEEEeccchhHH
Confidence 55 578999999998654
No 216
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.26 E-value=0.048 Score=40.45 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCc
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKK 77 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~ 77 (180)
+|+||||+|+.++..+. ... +.-++...-+. ..-........... ...+..-+.+-+.+.|...+++++
T Consensus 17 SgSGKTTva~~l~~~~~---~~~--~~~I~~D~YYk-~~~~~~~~~~~~~n-~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 17 SGSGKTTVAKELSEQLG---VEK--VVVISLDDYYK-DQSHLPFEERNKIN-YDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CCCCHHHHHHHHHHHhC---cCc--ceEeecccccc-chhhcCHhhcCCcC-ccChhhhcHHHHHHHHHHHHcCCc
Confidence 69999999999999874 221 11122111111 00000111111111 233455667777777777777776
No 217
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.26 E-value=0.42 Score=40.73 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=28.3
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI 141 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~ 141 (180)
..++..+++.++-.+.+.+. .+..|++.++|.+-.+.
T Consensus 171 ~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 171 QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 46788899999888777765 57778889999775443
No 218
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.24 E-value=0.034 Score=42.76 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
.||+||||+|+++...+.
T Consensus 9 ~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 9 LPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -TTSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 489999999999998864
No 219
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.21 E-value=0.096 Score=40.01 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=22.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
.||+|||++|.+++.... ..-..+++++...
T Consensus 44 ~pGtGKT~l~~qf~~~~a---~~Ge~vlyis~Ee 74 (259)
T TIGR03878 44 VSDTGKSLMVEQFAVTQA---SRGNPVLFVTVES 74 (259)
T ss_pred CCCCCHHHHHHHHHHHHH---hCCCcEEEEEecC
Confidence 489999999999877632 2234677887764
No 220
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.19 E-value=0.15 Score=38.22 Aligned_cols=42 Identities=14% Similarity=0.179 Sum_probs=26.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVG 46 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 46 (180)
.+|+|||++|.+++.+.. .++=..++|++... +..++...++
T Consensus 21 ~~G~GKT~~~~~~~~~~~--~~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 21 RPSMGKTAFALNIAENIA--KKQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CCCCCHHHHHHHHHHHHH--HhCCCceEEEeCCC--CHHHHHHHHH
Confidence 379999999999988742 23223566766443 4444444443
No 221
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=95.18 E-value=0.051 Score=45.39 Aligned_cols=82 Identities=12% Similarity=0.229 Sum_probs=46.0
Q ss_pred CCCcHHHHH-HHHHcccccccCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCCCCC---CCCCcChH-H-----HHHHH
Q 046006 2 GGVGKTTLL-THINNKFLVSSTDFDCV-IWIVVSKDL-QLEKIQEIVGKKVGLLDGD---SWKNKNSE-E-----KALEI 69 (180)
Q Consensus 2 gGiGKTtLA-~~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~~---~~~~~~~~-~-----~~~~l 69 (180)
.|+|||+|| ..+.++ ..-|.+ +++-+++.. ...++.+.+...=.....- .....+.. + ....+
T Consensus 170 ~g~GKt~Lal~~i~~~-----~~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a~~~a~ai 244 (501)
T TIGR00962 170 RQTGKTAVAIDTIINQ-----KDSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLAPYTGCTM 244 (501)
T ss_pred CCCCccHHHHHHHHhh-----cCCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 499999997 456565 234564 778888765 4566666665532221000 01111111 1 12334
Q ss_pred HHHh--CCCcEEEEEeCCCCc
Q 046006 70 FRFL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 70 ~~~L--~~k~~LlVlDdv~~~ 88 (180)
.+++ +++.+|+|+||+...
T Consensus 245 AEyfrd~G~~VLlv~Ddltr~ 265 (501)
T TIGR00962 245 AEYFRDNGKHALIIYDDLSKH 265 (501)
T ss_pred HHHHHHcCCCEEEEecchHHH
Confidence 4444 478999999998754
No 222
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.18 E-value=0.07 Score=41.63 Aligned_cols=17 Identities=35% Similarity=0.448 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|..+++.+
T Consensus 32 p~G~Gktt~a~~lA~~l 48 (325)
T COG0470 32 PPGVGKTTAALALAKEL 48 (325)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998875
No 223
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.17 E-value=0.033 Score=49.16 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||++|+.+++.+
T Consensus 355 ppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 355 PPGVGKTSLGKSIAKAL 371 (775)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999999885
No 224
>PRK06762 hypothetical protein; Provisional
Probab=95.15 E-value=0.012 Score=41.52 Aligned_cols=17 Identities=29% Similarity=0.601 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 10 ~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 10 NSGSGKTTIAKQLQERL 26 (166)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998875
No 225
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.13 E-value=0.5 Score=36.69 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=30.4
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG 144 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~ 144 (180)
-+.+++..+.+|-.++..+. .+.+|+++..|-|--..-+-
T Consensus 174 i~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 174 IIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred CeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHH
Confidence 35678888888888887776 78899999999996443333
No 226
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.12 E-value=0.083 Score=47.17 Aligned_cols=77 Identities=21% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
++|+|||++|+.+...+. ..-...+-++++....... +.+.++.+ ...........+...++ +....++
T Consensus 603 p~GvGKt~lA~~La~~l~---~~~~~~i~~d~s~~~~~~~----~~~l~g~~-~g~~g~~~~g~l~~~v~---~~p~~vl 671 (852)
T TIGR03346 603 PTGVGKTELAKALAEFLF---DDEDAMVRIDMSEYMEKHS----VARLIGAP-PGYVGYEEGGQLTEAVR---RKPYSVV 671 (852)
T ss_pred CCCCCHHHHHHHHHHHhc---CCCCcEEEEechhhcccch----HHHhcCCC-CCccCcccccHHHHHHH---cCCCcEE
Confidence 479999999999998742 2222344455554222111 11223322 11111111222333322 2334599
Q ss_pred EEeCCCCc
Q 046006 81 LLDDKWER 88 (180)
Q Consensus 81 VlDdv~~~ 88 (180)
+||++...
T Consensus 672 llDeieka 679 (852)
T TIGR03346 672 LFDEVEKA 679 (852)
T ss_pred EEeccccC
Confidence 99999865
No 227
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.025 Score=39.96 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=27.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLL 52 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 52 (180)
+||+||||+|+.+++++. . -.+ +.-.+++++++..+.+
T Consensus 8 ~pGsG~TTva~~lAe~~g-----l---~~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 8 LPGSGKTTVARELAEHLG-----L---KLV------SAGTIFREMARERGMS 45 (179)
T ss_pred CCCCChhHHHHHHHHHhC-----C---cee------eccHHHHHHHHHcCCC
Confidence 589999999999999863 1 111 3346788888887764
No 228
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.09 E-value=0.088 Score=39.40 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQL 38 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 38 (180)
||.||||++..++..+. .+-..+.-+....+..+
T Consensus 11 GGaGKTT~~~~LAs~la---~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 11 GGAGKTTAAMALASELA---ARGARVALIDADPNQPL 44 (231)
T ss_pred CCCcHHHHHHHHHHHHH---HCCCeEEEEeCCCCCcH
Confidence 89999999999998863 22234445554443333
No 229
>PRK00625 shikimate kinase; Provisional
Probab=95.09 E-value=0.013 Score=42.01 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
|+|+||||+++.+..++
T Consensus 8 ~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 8 LPTVGKTSFGKALAKFL 24 (173)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999998874
No 230
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.021 Score=48.37 Aligned_cols=63 Identities=22% Similarity=0.218 Sum_probs=36.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~L 79 (180)
+||+|||-||++++|.-. -. |+++-.+ +++...- ...+..++.+.+.-+ +-+|.
T Consensus 553 PPGCGKTLlAKAVANEag---~N-----FisVKGP--------ELlNkYV---------GESErAVR~vFqRAR~saPCV 607 (802)
T KOG0733|consen 553 PPGCGKTLLAKAVANEAG---AN-----FISVKGP--------ELLNKYV---------GESERAVRQVFQRARASAPCV 607 (802)
T ss_pred CCCccHHHHHHHHhhhcc---Cc-----eEeecCH--------HHHHHHh---------hhHHHHHHHHHHHhhcCCCeE
Confidence 589999999999999821 22 3333221 1111110 112333444444443 57999
Q ss_pred EEEeCCCCc
Q 046006 80 LLLDDKWER 88 (180)
Q Consensus 80 lVlDdv~~~ 88 (180)
|.||.++..
T Consensus 608 IFFDEiDaL 616 (802)
T KOG0733|consen 608 IFFDEIDAL 616 (802)
T ss_pred EEecchhhc
Confidence 999999875
No 231
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.08 E-value=0.16 Score=38.13 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+|||+||.+++...
T Consensus 9 ~~G~GKS~lal~la~~v 25 (239)
T cd01125 9 PGGTGKSSLLLVLALAM 25 (239)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998753
No 232
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.07 E-value=0.018 Score=40.48 Aligned_cols=82 Identities=17% Similarity=0.096 Sum_probs=41.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEE-------eCC--CCCHHH---H---HHHHHHHhCCCCCC---CCCCcCh
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV-------VSK--DLQLEK---I---QEIVGKKVGLLDGD---SWKNKNS 62 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-------~~~--~~~~~~---~---~~~i~~~l~~~~~~---~~~~~~~ 62 (180)
++|+||||||+.+...+. ..-..++++. ++. .++..+ - +..+++.+..+ .. .......
T Consensus 10 lsGsGKtTlA~~L~~~L~---~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~-G~ivIva~isp~ 85 (156)
T PF01583_consen 10 LSGSGKTTLARALERRLF---ARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQ-GIIVIVAFISPY 85 (156)
T ss_dssp STTSSHHHHHHHHHHHHH---HTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHT-TSEEEEE----S
T ss_pred CCCCCHHHHHHHHHHHHH---HcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhC-CCeEEEeeccCc
Confidence 589999999999999874 3334566664 222 223222 1 12222222111 00 0112234
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCCC
Q 046006 63 EEKALEIFRFLSKKKFVLLLDDKW 86 (180)
Q Consensus 63 ~~~~~~l~~~L~~k~~LlVlDdv~ 86 (180)
.+..+..++.+.+.+|+-|.=++.
T Consensus 86 ~~~R~~~R~~~~~~~f~eVyv~~~ 109 (156)
T PF01583_consen 86 REDREWARELIPNERFIEVYVDCP 109 (156)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEES-
T ss_pred hHHHHHHHHhCCcCceEEEEeCCC
Confidence 556666677776668887776663
No 233
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.07 E-value=0.18 Score=36.11 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=44.9
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEE---eCCCCCHHH------HHHHHHHHhCCCCC--CCCCCcC-hHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV---VSKDLQLEK------IQEIVGKKVGLLDG--DSWKNKN-SEEKALEI 69 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~------~~~~i~~~l~~~~~--~~~~~~~-~~~~~~~l 69 (180)
.|+|||||.+.++... ....+.++++ +. ..+... ...++++.++.... .....-+ .+...-.+
T Consensus 34 nGsGKStLl~~i~G~~----~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl~l 108 (180)
T cd03214 34 NGAGKSTLLKTLAGLL----KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRVLL 108 (180)
T ss_pred CCCCHHHHHHHHhCCC----CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHH
Confidence 6999999999998874 3445666553 22 112222 12224555554311 1111222 22333445
Q ss_pred HHHhCCCcEEEEEeCCCCc
Q 046006 70 FRFLSKKKFVLLLDDKWER 88 (180)
Q Consensus 70 ~~~L~~k~~LlVlDdv~~~ 88 (180)
...+-..+-++++|+--..
T Consensus 109 aral~~~p~llllDEP~~~ 127 (180)
T cd03214 109 ARALAQEPPILLLDEPTSH 127 (180)
T ss_pred HHHHhcCCCEEEEeCCccC
Confidence 5566677889999996443
No 234
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.05 E-value=1.2 Score=35.27 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=30.6
Q ss_pred ceEeecCCChhhhHHHHHHH-----HHHHHHHHcCCChHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----LAQTVAKKCVGLPLALIT 142 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----~~~~i~~~c~g~PLal~~ 142 (180)
..+.+.+++.+++.+.+.+. .+..++..++|.|+....
T Consensus 165 q~i~~~~~~~~~~~~~L~~~~~~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLAQGVSERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred eEeeCCCcCHHHHHHHHHHcCCChHHHHHHHHHcCCCHHHHHH
Confidence 56789999999999888766 455789999999985543
No 235
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.05 E-value=0.017 Score=43.27 Aligned_cols=17 Identities=35% Similarity=0.417 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+||||+|+.++..+
T Consensus 14 ~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 14 APGVGKGTFAEILSKKE 30 (229)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998875
No 236
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=95.05 E-value=0.41 Score=38.29 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=29.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVG 46 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 46 (180)
.|+|||+|+++++++ .+-+.++++-+++.. ...+++.++-
T Consensus 166 ~G~GKT~L~~~Iak~-----~~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 166 FGCGKTVIQQSLSKY-----SNSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCCChHHHHHHHHhC-----CCCCEEEEEEeCCChHHHHHHHHHHH
Confidence 699999999999998 234578888887754 4555555543
No 237
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.03 E-value=0.016 Score=34.85 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||+|+.+.+.+
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998874
No 238
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.075 Score=43.41 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||++.+++..+
T Consensus 231 ptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 231 PTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998763
No 239
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.00 E-value=0.089 Score=41.48 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=45.7
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhCC-CcE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLSK-KKF 78 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~~-k~~ 78 (180)
.|+||||||.++..... ..-..++|+.....++.. .++.++.+... -..+.+.++....+.+.++. ..-
T Consensus 62 ~ssGKttLaL~~ia~~q---~~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~ 133 (322)
T PF00154_consen 62 ESSGKTTLALHAIAEAQ---KQGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVD 133 (322)
T ss_dssp TTSSHHHHHHHHHHHHH---HTT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSES
T ss_pred CCCchhhhHHHHHHhhh---cccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHHHhhccccc
Confidence 68999999999987742 233467888877665553 33455543111 11234566777777776754 456
Q ss_pred EEEEeCCCCc
Q 046006 79 VLLLDDKWER 88 (180)
Q Consensus 79 LlVlDdv~~~ 88 (180)
++|+|-|...
T Consensus 134 lVVvDSv~al 143 (322)
T PF00154_consen 134 LVVVDSVAAL 143 (322)
T ss_dssp EEEEE-CTT-
T ss_pred EEEEecCccc
Confidence 8999998765
No 240
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.97 E-value=1.4 Score=34.90 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=27.8
Q ss_pred ceEeecCCChhhhHHHHHHH------HHHHHHHHcCCChH
Q 046006 105 KNFKVECLSDNDAWELLRQK------LAQTVAKKCVGLPL 138 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~------~~~~i~~~c~g~PL 138 (180)
..+.+.++++++..+.+.+. .+...+..++|.|+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSSAEISEILTALRINYGRPL 198 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhccChHHHHHHHHHcCCCHH
Confidence 57889999999999888875 34556778999996
No 241
>PRK14527 adenylate kinase; Provisional
Probab=94.97 E-value=0.034 Score=40.26 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 14 ~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 14 PPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999998775
No 242
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=94.96 E-value=0.082 Score=43.84 Aligned_cols=82 Identities=10% Similarity=0.245 Sum_probs=45.0
Q ss_pred CCCcHHHHHHH-HHcccccccCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcC-hHH-----HHHHH
Q 046006 2 GGVGKTTLLTH-INNKFLVSSTDFDCV-IWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKN-SEE-----KALEI 69 (180)
Q Consensus 2 gGiGKTtLA~~-~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~-----~~~~l 69 (180)
.|+|||+||.. +.++ ..-|.+ +++-+++.. ...++...+...=..... ......+ ..+ ....+
T Consensus 150 ~g~GKt~Lal~~I~~q-----~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~ai 224 (485)
T CHL00059 150 RQTGKTAVATDTILNQ-----KGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAAL 224 (485)
T ss_pred CCCCHHHHHHHHHHhc-----ccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhH
Confidence 59999999765 5554 233545 777787655 555666666543221100 0011111 111 11224
Q ss_pred HHHh--CCCcEEEEEeCCCCc
Q 046006 70 FRFL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 70 ~~~L--~~k~~LlVlDdv~~~ 88 (180)
.+++ +++++|+|+||+-..
T Consensus 225 AEyfr~~G~~VLlv~DdlTr~ 245 (485)
T CHL00059 225 AEYFMYRGRHTLIIYDDLSKQ 245 (485)
T ss_pred HHHHHHcCCCEEEEEcChhHH
Confidence 4444 578999999998754
No 243
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.96 E-value=0.12 Score=42.43 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=42.8
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCC------CCC---CCCcChHHHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLD------GDS---WKNKNSEEKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~------~~~---~~~~~~~~~~~~l~~ 71 (180)
.|+|||||++.+.... ..+..+...++. .....++....+..-+... ..+ .......+....+.+
T Consensus 164 sGaGKSTLl~~I~g~~-----~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s~~~rl~a~e~a~~iAE 238 (434)
T PRK07196 164 SGVGKSVLLGMITRYT-----QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADESPLMRIKATELCHAIAT 238 (434)
T ss_pred CCCCccHHHHHHhccc-----CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCChhhhHHHHHHHHHHHH
Confidence 6999999999988763 223333333433 2234444434443322110 000 011112233344455
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++.+||++||+-..
T Consensus 239 yfr~~g~~Vll~~Dsltr~ 257 (434)
T PRK07196 239 YYRDKGHDVLLLVDSLTRY 257 (434)
T ss_pred HhhhccCCEEEeecchhHH
Confidence 54 478999999998654
No 244
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=94.95 E-value=0.13 Score=42.39 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=45.4
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcC-hH-----HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKN-SE-----EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~-~~-----~~~~~l~~ 71 (180)
.|+|||||++.+.... ..+.++...++... ...++...+...-+.... ......+ .. .....+.+
T Consensus 177 sG~GKSTLl~~I~g~~-----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~aiAE 251 (451)
T PRK05688 177 TGVGKSVLLGMMTRFT-----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCTRIAE 251 (451)
T ss_pred CCCCHHHHHHHHhCCC-----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998762 23454444455443 455555555544322100 0011111 11 12233455
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++++||++||+-..
T Consensus 252 yfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 252 YFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHCCCCEEEEecchhHH
Confidence 55 588999999998654
No 245
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.92 E-value=0.037 Score=40.90 Aligned_cols=17 Identities=35% Similarity=0.471 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+||||+|+.++..+
T Consensus 8 ~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 8 PPGAGKGTQAKFIAEKY 24 (215)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998774
No 246
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.90 E-value=1.4 Score=34.80 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=31.5
Q ss_pred ceEeecCCChhhhHHHHHHH---HHHHHHHHcCCChHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK---LAQTVAKKCVGLPLALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~---~~~~i~~~c~g~PLal~~~ 143 (180)
..+.+.+++.++..+.+.+. ....++..++|.|+....+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~~~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 160 QQWVVTPPSTAQAMQWLKGQGITVPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eeEeCCCCCHHHHHHHHHHcCCchHHHHHHHcCCCHHHHHHH
Confidence 57889999999999998776 4567788999999866443
No 247
>PRK05922 type III secretion system ATPase; Validated
Probab=94.89 E-value=0.096 Score=42.98 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=45.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~ 71 (180)
.|+|||||.+.++... ..+.....-+++. ....+.+.+.......... ......+.. ...-.+.+
T Consensus 166 nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~tiAE 240 (434)
T PRK05922 166 PGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAMTIAE 240 (434)
T ss_pred CCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998872 2344444444443 3344555555443322200 001111111 12233455
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++++|+++||+-..
T Consensus 241 yfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 241 YFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHcCCCEEEeccchhHH
Confidence 55 589999999998764
No 248
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.89 E-value=0.16 Score=41.23 Aligned_cols=83 Identities=19% Similarity=0.170 Sum_probs=46.2
Q ss_pred CCCCcHHHHHHHHHccccccc-CCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSS-TDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~-~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~ 78 (180)
..|+||||.+..++..+.... .+-..+..++.... .....-+...++.++.+ .....+.++....+.+. .+.-
T Consensus 182 ptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp---v~~~~~~~~l~~~L~~~--~~~D 256 (388)
T PRK12723 182 PTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP---VKAIESFKDLKEEITQS--KDFD 256 (388)
T ss_pred CCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc---eEeeCcHHHHHHHHHHh--CCCC
Confidence 369999999999987753211 11234555655532 23333466666666654 12223344444444433 3456
Q ss_pred EEEEeCCCCc
Q 046006 79 VLLLDDKWER 88 (180)
Q Consensus 79 LlVlDdv~~~ 88 (180)
++++|.+-..
T Consensus 257 lVLIDTaGr~ 266 (388)
T PRK12723 257 LVLVDTIGKS 266 (388)
T ss_pred EEEEcCCCCC
Confidence 8888887654
No 249
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=94.87 E-value=0.13 Score=42.31 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=41.7
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---CCCCCcCh------HHHHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG---DSWKNKNS------EEKALEIFRF 72 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~------~~~~~~l~~~ 72 (180)
+|+|||||++.+.... ..-.+++++.--+.....++....+..-+.... ......+. ....-.+.++
T Consensus 167 sG~GKStLl~~I~~~~----~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~~iAEy 242 (438)
T PRK07721 167 SGVGKSTLMGMIARNT----SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTATAIAEY 242 (438)
T ss_pred CCCCHHHHHHHHhccc----CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6999999999888773 222344444322333445444332221111000 00111111 1122334455
Q ss_pred h--CCCcEEEEEeCCCCc
Q 046006 73 L--SKKKFVLLLDDKWER 88 (180)
Q Consensus 73 L--~~k~~LlVlDdv~~~ 88 (180)
+ +++.+||++||+-..
T Consensus 243 fr~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 243 FRDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHHCCCcEEEEEeChHHH
Confidence 5 588999999998653
No 250
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.87 E-value=0.086 Score=46.27 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=17.2
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
..+.+++++.++..+++...
T Consensus 338 ~~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 338 QKIDVGEPSIEETVKILKGL 357 (731)
T ss_pred ceEEeCCCCHHHHHHHHHHH
Confidence 46889999999999998864
No 251
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.87 E-value=0.13 Score=42.35 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=44.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~ 71 (180)
+|+|||||++.++... ..+..+..-+++ .....++.+.+...-+.... ......+.. ...-.+.+
T Consensus 172 sG~GKTtLl~~ia~~~-----~~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~tiAE 246 (441)
T PRK09099 172 AGVGKSTLMGMFARGT-----QCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATAIAE 246 (441)
T ss_pred CCCCHHHHHHHHhCCC-----CCCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998773 123333334444 34555555555443222100 001111111 12233445
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++.+|+++||+-..
T Consensus 247 yfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 247 YFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHcCCCEEEeccchhHH
Confidence 55 488999999998654
No 252
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.86 E-value=0.14 Score=41.56 Aligned_cols=82 Identities=22% Similarity=0.285 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCCcC------hHHHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDG---DSWKNKN------SEEKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~------~~~~~~~l~~ 71 (180)
+|+|||||--.+++. ..+|.++--=+++ -..+.+++++.+..-+.... ..+...+ ....+..+.+
T Consensus 172 sGVGKStLLgMiar~-----t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~~At~IAE 246 (441)
T COG1157 172 SGVGKSTLLGMIARN-----TEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAFTATTIAE 246 (441)
T ss_pred CCCcHHHHHHHHhcc-----ccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 699999999999987 6777766555655 34677888777766554310 0111111 2233556777
Q ss_pred HhC--CCcEEEEEeCCCCc
Q 046006 72 FLS--KKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L~--~k~~LlVlDdv~~~ 88 (180)
+++ ++++||++|-+-..
T Consensus 247 yFRDqG~~VLL~mDSlTRf 265 (441)
T COG1157 247 YFRDQGKRVLLIMDSLTRF 265 (441)
T ss_pred HHHhCCCeEEEEeecHHHH
Confidence 774 78999999998653
No 253
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.85 E-value=0.32 Score=38.51 Aligned_cols=82 Identities=22% Similarity=0.236 Sum_probs=45.3
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~ 71 (180)
+|+|||||.+.++... .-+..+..-++. .....++.......-+.... ......+.. ...-.+.+
T Consensus 78 sG~GKTtLl~~Ia~~~-----~~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AE 152 (326)
T cd01136 78 SGVGKSTLLGMIARGT-----TADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAE 152 (326)
T ss_pred CCCChHHHHHHHhCCC-----CCCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998873 223444455554 34556666555554322100 011111111 12233444
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++.+|+++||+-..
T Consensus 153 yfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 153 YFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHcCCCeEEEeccchHH
Confidence 44 588999999997653
No 254
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.84 E-value=0.084 Score=46.34 Aligned_cols=73 Identities=19% Similarity=0.164 Sum_probs=37.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~L 79 (180)
++|+|||.||+.++..+. ...+.+++++-.... .+.+.++.+ ........... +.+.++ ....+
T Consensus 492 p~GvGKT~lA~~la~~l~------~~~~~~d~se~~~~~----~~~~lig~~-~gyvg~~~~~~----l~~~~~~~p~~V 556 (731)
T TIGR02639 492 PTGVGKTELAKQLAEALG------VHLERFDMSEYMEKH----TVSRLIGAP-PGYVGFEQGGL----LTEAVRKHPHCV 556 (731)
T ss_pred CCCccHHHHHHHHHHHhc------CCeEEEeCchhhhcc----cHHHHhcCC-CCCcccchhhH----HHHHHHhCCCeE
Confidence 479999999999988752 233455554422111 122223322 11111111222 333333 34569
Q ss_pred EEEeCCCCc
Q 046006 80 LLLDDKWER 88 (180)
Q Consensus 80 lVlDdv~~~ 88 (180)
++||+++..
T Consensus 557 vllDEieka 565 (731)
T TIGR02639 557 LLLDEIEKA 565 (731)
T ss_pred EEEechhhc
Confidence 999999865
No 255
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.82 E-value=0.1 Score=42.86 Aligned_cols=80 Identities=21% Similarity=0.135 Sum_probs=41.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
++|+||||++..++..+. ....-..+..++..... ...+-+....+.++.+ . ....+..+....+.+ +. ..=+
T Consensus 229 ptGvGKTTt~~kLA~~~~-~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp-~--~~~~~~~~l~~~l~~-~~-~~Dl 302 (424)
T PRK05703 229 PTGVGKTTTLAKLAARYA-LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP-V--EVVYDPKELAKALEQ-LR-DCDV 302 (424)
T ss_pred CCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc-e--EccCCHHhHHHHHHH-hC-CCCE
Confidence 479999999998877642 01222345566554321 1223344444555543 1 122333444444443 33 3467
Q ss_pred EEEeCCC
Q 046006 80 LLLDDKW 86 (180)
Q Consensus 80 lVlDdv~ 86 (180)
+++|..-
T Consensus 303 VlIDt~G 309 (424)
T PRK05703 303 ILIDTAG 309 (424)
T ss_pred EEEeCCC
Confidence 7888763
No 256
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.81 E-value=0.15 Score=41.51 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=32.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEE-eCCCCCHHHHHHHHHHHhCCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV-VSKDLQLEKIQEIVGKKVGLL 52 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-~~~~~~~~~~~~~i~~~l~~~ 52 (180)
=|.||||-|-.+++.+.. ..+. +.-|+ .-..+...+-++.+.++.+.+
T Consensus 109 QGsGKTTt~~KLA~~lkk--~~~k-vllVaaD~~RpAA~eQL~~La~q~~v~ 157 (451)
T COG0541 109 QGSGKTTTAGKLAKYLKK--KGKK-VLLVAADTYRPAAIEQLKQLAEQVGVP 157 (451)
T ss_pred cCCChHhHHHHHHHHHHH--cCCc-eEEEecccCChHHHHHHHHHHHHcCCc
Confidence 399999999999998742 2222 23333 233456666788888888765
No 257
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=94.80 E-value=0.028 Score=49.00 Aligned_cols=77 Identities=23% Similarity=0.337 Sum_probs=42.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcE-E
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKF-V 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~-L 79 (180)
+.|+|||.||+.++..+- +.-+..+=+++|+--. -..+.+-+|.+++. ........ |-+..+.++| +
T Consensus 529 PTGVGKTELAkaLA~~Lf---g~e~aliR~DMSEy~E----kHsVSrLIGaPPGY-VGyeeGG~----LTEaVRr~PySV 596 (786)
T COG0542 529 PTGVGKTELAKALAEALF---GDEQALIRIDMSEYME----KHSVSRLIGAPPGY-VGYEEGGQ----LTEAVRRKPYSV 596 (786)
T ss_pred CCcccHHHHHHHHHHHhc---CCCccceeechHHHHH----HHHHHHHhCCCCCC-ceeccccc----hhHhhhcCCCeE
Confidence 479999999999988752 1113444454443211 12333445544221 11122333 4445566766 8
Q ss_pred EEEeCCCCcc
Q 046006 80 LLLDDKWERV 89 (180)
Q Consensus 80 lVlDdv~~~~ 89 (180)
+.||++...+
T Consensus 597 iLlDEIEKAH 606 (786)
T COG0542 597 ILLDEIEKAH 606 (786)
T ss_pred EEechhhhcC
Confidence 8899998764
No 258
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.76 E-value=0.24 Score=40.46 Aligned_cols=82 Identities=22% Similarity=0.249 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~ 71 (180)
+|+|||||.+.+.+.. ..+..+...+++.. ...++...+...=..... ......+.. ...-.+.+
T Consensus 146 sG~GKTtLl~~I~~~~-----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiAE 220 (411)
T TIGR03496 146 SGVGKSTLLGMMARYT-----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYATAIAE 220 (411)
T ss_pred CCCCHHHHHHHHhcCC-----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999888773 22445555566543 455555555433211100 001111111 12233444
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++++|+++||+-..
T Consensus 221 yfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 221 YFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHCCCCEEEEEeChHHH
Confidence 44 588999999998653
No 259
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.74 E-value=0.027 Score=42.79 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
||+||||+|.+++..++...+ ..++.+....
T Consensus 12 GGvGKTT~a~nLa~~La~~~~--~kVLliDlDp 42 (259)
T COG1192 12 GGVGKTTTAVNLAAALAKRGG--KKVLLIDLDP 42 (259)
T ss_pred CCccHHHHHHHHHHHHHHhcC--CcEEEEeCCC
Confidence 899999999999998741211 3466666544
No 260
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.036 Score=38.69 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=33.1
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSK 75 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~ 75 (180)
||+||||||.+++... +.-|+++|.-..-..+...-=+. .....-+.+.....|--.+..
T Consensus 16 PG~GKstl~~~lae~~--------~~~~i~isd~vkEn~l~~gyDE~------y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 16 PGTGKSTLAERLAEKT--------GLEYIEISDLVKENNLYEGYDEE------YKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCCchhHHHHHHHHh--------CCceEehhhHHhhhcchhccccc------ccCccccHHHHHHHHHHHHhc
Confidence 7999999999998662 23466666433333332221111 122334555666666655543
No 261
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=94.70 E-value=0.036 Score=39.85 Aligned_cols=37 Identities=27% Similarity=0.321 Sum_probs=24.1
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKI 41 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 41 (180)
||+||||+|..++..+.. +-..++-+......+....
T Consensus 8 GG~GKTt~a~~la~~la~---~g~~VlliD~D~~~~~~~~ 44 (195)
T PF01656_consen 8 GGVGKTTIAANLAQALAR---KGKKVLLIDLDPQAPNLSI 44 (195)
T ss_dssp TTSSHHHHHHHHHHHHHH---TTS-EEEEEESTTSHHHHH
T ss_pred CCccHHHHHHHHHhcccc---ccccccccccCcccccHHH
Confidence 899999999999988642 2234556665544433333
No 262
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.70 E-value=0.019 Score=40.60 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 12 ~~GsGKstla~~La~~l 28 (175)
T PRK00131 12 FMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999885
No 263
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.69 E-value=0.021 Score=39.56 Aligned_cols=17 Identities=24% Similarity=0.515 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 7 ~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 7 VSGSGKSTVGKALAERL 23 (150)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 48999999999998873
No 264
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.24 Score=42.37 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
+||+|||++|+.+++.
T Consensus 476 PPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 476 PPGCGKTLLAKALANE 491 (693)
T ss_pred CCCcchHHHHHHHhhh
Confidence 5899999999999998
No 265
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.64 E-value=0.26 Score=36.67 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||+|+.+...+
T Consensus 7 ~sGSGKTTla~~L~~~l 23 (220)
T cd02025 7 SVAVGKSTTARVLQALL 23 (220)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999999875
No 266
>PHA02518 ParA-like protein; Provisional
Probab=94.63 E-value=0.053 Score=39.58 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEK 40 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 40 (180)
||+||||+|..++..+.. .. ..++-++.....+...
T Consensus 10 GGvGKTT~a~~la~~la~--~g-~~vlliD~D~q~~~~~ 45 (211)
T PHA02518 10 GGAGKTTVATNLASWLHA--DG-HKVLLVDLDPQGSSTD 45 (211)
T ss_pred CCCCHHHHHHHHHHHHHh--CC-CeEEEEeCCCCCChHH
Confidence 899999999998887531 11 2455566555444443
No 267
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.63 E-value=0.14 Score=43.05 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=39.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
.+|+||||++..++..+. .+.....+..++... .....+.+....+.++.. .....+..++...+. .+.+ .=+
T Consensus 358 PtGvGKTTtaakLAa~la-~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~---v~~a~d~~~L~~aL~-~l~~-~DL 431 (559)
T PRK12727 358 PTGAGKTTTIAKLAQRFA-AQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIA---VHEADSAESLLDLLE-RLRD-YKL 431 (559)
T ss_pred CCCCCHHHHHHHHHHHHH-HhcCCCceEEEecccccccHHHHHHHhhcccCce---eEecCcHHHHHHHHH-Hhcc-CCE
Confidence 379999999999887642 112123344555432 222223333333444332 111223334443333 3333 457
Q ss_pred EEEeCCCC
Q 046006 80 LLLDDKWE 87 (180)
Q Consensus 80 lVlDdv~~ 87 (180)
+++|..-.
T Consensus 432 VLIDTaG~ 439 (559)
T PRK12727 432 VLIDTAGM 439 (559)
T ss_pred EEecCCCc
Confidence 78888643
No 268
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.62 E-value=0.5 Score=37.41 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=16.6
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
..+++.+++.++..+.+.+.
T Consensus 162 ~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 162 QVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred eeeeCCCCCHHHHHHHHHHc
Confidence 57889999999988888765
No 269
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.60 E-value=0.021 Score=40.77 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+....
T Consensus 10 ~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 10 GSSAGKSSIARALQSVL 26 (175)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 58999999999998874
No 270
>PRK13947 shikimate kinase; Provisional
Probab=94.60 E-value=0.02 Score=40.50 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
|+|+||||+|+.+++.+
T Consensus 9 ~~GsGKst~a~~La~~l 25 (171)
T PRK13947 9 FMGTGKTTVGKRVATTL 25 (171)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 68999999999999885
No 271
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.60 E-value=0.068 Score=41.79 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||++|+.+++..
T Consensus 51 ~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 51 SPGTGKTTVAKALCNEV 67 (316)
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 47999999999998874
No 272
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.59 E-value=0.034 Score=43.59 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQ 42 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 42 (180)
||+||||+|..++-...+ ++ ..++-++....+++.+++
T Consensus 10 GGVGKTT~aaA~A~~~A~-~G--~rtLlvS~Dpa~~L~d~l 47 (305)
T PF02374_consen 10 GGVGKTTVAAALALALAR-RG--KRTLLVSTDPAHSLSDVL 47 (305)
T ss_dssp TTSSHHHHHHHHHHHHHH-TT--S-EEEEESSTTTHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhh-CC--CCeeEeecCCCccHHHHh
Confidence 899999999888776532 11 234555555444444443
No 273
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.57 E-value=0.018 Score=42.87 Aligned_cols=83 Identities=19% Similarity=0.085 Sum_probs=47.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-------------CCCC----CCcChH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD-------------GDSW----KNKNSE 63 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------------~~~~----~~~~~~ 63 (180)
.+|+|||+||.+++.... . +.=..++|++..+++ .++.+.+- .++.+. .... ...+.+
T Consensus 27 ~~GsGKT~l~~q~l~~~~-~-~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~~~~ 101 (226)
T PF06745_consen 27 PPGSGKTTLALQFLYNGL-K-NFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIGWSPNDLE 101 (226)
T ss_dssp STTSSHHHHHHHHHHHHH-H-HHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST-TSCCHH
T ss_pred CCCCCcHHHHHHHHHHhh-h-hcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccccccccCHH
Confidence 379999999999776532 1 213457788765433 44444432 333210 0000 045677
Q ss_pred HHHHHHHHHhCC-CcEEEEEeCCCCc
Q 046006 64 EKALEIFRFLSK-KKFVLLLDDKWER 88 (180)
Q Consensus 64 ~~~~~l~~~L~~-k~~LlVlDdv~~~ 88 (180)
.....+.+.++. +...+|+|.+...
T Consensus 102 ~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 102 ELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp HHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 888888887753 4579999987544
No 274
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.56 E-value=0.044 Score=43.18 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=26.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEI 44 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 44 (180)
.||+||||+|.+.+-... .....++-|+....+++.+++..
T Consensus 10 KGGVGKTT~aaA~A~~lA---~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 10 KGGVGKTTIAAATAVKLA---ESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred CCcccHHHHHHHHHHHHH---HcCCcEEEEEeCCCCchHhhhcc
Confidence 389999999999777653 22244666665555555554433
No 275
>PRK06820 type III secretion system ATPase; Validated
Probab=94.53 E-value=0.11 Score=42.75 Aligned_cols=82 Identities=21% Similarity=0.228 Sum_probs=42.1
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l~~ 71 (180)
+|+|||||++.++... +.+.++..-+++.. ...++....+..=..... ......+... ....+.+
T Consensus 172 sG~GKStLl~~I~~~~-----~~dv~V~~~iGergrEv~ef~e~~l~~~~~~rtvvv~atsd~p~~~r~~a~~~a~tiAE 246 (440)
T PRK06820 172 AGVGKSTLLGMLCADS-----AADVMVLALIGERGREVREFLEQVLTPEARARTVVVVATSDRPALERLKGLSTATTIAE 246 (440)
T ss_pred CCCChHHHHHHHhccC-----CCCEEEEEEEccChHHHHHHHHHhhccCCceeEEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999888762 33455555566552 222232222211000000 0011111111 2233445
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++.+||++||+-..
T Consensus 247 yfrd~G~~VLl~~Dsltr~ 265 (440)
T PRK06820 247 YFRDRGKKVLLMADSLTRY 265 (440)
T ss_pred HHHHcCCCEEEEccchhHH
Confidence 55 488999999998654
No 276
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=94.52 E-value=0.11 Score=43.07 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=49.0
Q ss_pred CCCcHHHHHHHHHccccccc---CCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSS---TDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALE 68 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~---~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~ 68 (180)
.|+|||+|+..+.++- ... ..+ .++++-+++.. ...+++..+...=..... ......+.- -....
T Consensus 152 ~G~GKs~L~~~ia~~~-~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~t 229 (460)
T PRK04196 152 SGLPHNELAAQIARQA-KVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALT 229 (460)
T ss_pred CCCCccHHHHHHHHhh-hhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 5999999999998872 221 111 56677777654 566666666654221100 001111111 12344
Q ss_pred HHHHhC---CCcEEEEEeCCCCc
Q 046006 69 IFRFLS---KKKFVLLLDDKWER 88 (180)
Q Consensus 69 l~~~L~---~k~~LlVlDdv~~~ 88 (180)
+.++++ ++++||++||+-..
T Consensus 230 iAEyfr~d~G~~VLli~DslTR~ 252 (460)
T PRK04196 230 AAEYLAFEKGMHVLVILTDMTNY 252 (460)
T ss_pred HHHHHHHhcCCcEEEEEcChHHH
Confidence 666665 58999999998653
No 277
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.50 E-value=0.025 Score=43.54 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||++++.....+
T Consensus 41 ~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 41 PSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp STTSSHHHHHHHHHHCS
T ss_pred CCCCchhHHHHhhhccC
Confidence 47999999999988774
No 278
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.50 E-value=0.23 Score=43.74 Aligned_cols=20 Identities=5% Similarity=0.102 Sum_probs=17.5
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
..+.+++++.++..+++...
T Consensus 342 q~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 342 QKIDITEPSIEETVQIINGL 361 (758)
T ss_pred cEEEeCCCCHHHHHHHHHHH
Confidence 46899999999999998865
No 279
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.50 E-value=0.022 Score=40.77 Aligned_cols=17 Identities=35% Similarity=0.399 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+||||+|+.++..+
T Consensus 7 ~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 7 GPGSGKGTQCAKIVENF 23 (183)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999998874
No 280
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.48 E-value=0.2 Score=40.79 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=42.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCC-CcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSK-KKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-k~~ 78 (180)
.+|+||||++..++..+. ...+ .+..++.... ....+-+....+.++.+ .....+...+.+.+...-.. +.=
T Consensus 249 ptGvGKTTTiaKLA~~L~--~~Gk-kVglI~aDt~RiaAvEQLk~yae~lgip---v~v~~d~~~L~~aL~~lk~~~~~D 322 (436)
T PRK11889 249 PTGVGKTTTLAKMAWQFH--GKKK-TVGFITTDHSRIGTVQQLQDYVKTIGFE---VIAVRDEAAMTRALTYFKEEARVD 322 (436)
T ss_pred CCCCcHHHHHHHHHHHHH--HcCC-cEEEEecCCcchHHHHHHHHHhhhcCCc---EEecCCHHHHHHHHHHHHhccCCC
Confidence 479999999999988752 2222 2344544332 22333344444445443 11233555555555443321 334
Q ss_pred EEEEeCCCCc
Q 046006 79 VLLLDDKWER 88 (180)
Q Consensus 79 LlVlDdv~~~ 88 (180)
++++|-.-..
T Consensus 323 vVLIDTaGRs 332 (436)
T PRK11889 323 YILIDTAGKN 332 (436)
T ss_pred EEEEeCcccc
Confidence 6777876543
No 281
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.48 E-value=0.016 Score=39.34 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
.+|+|||++|+.++....
T Consensus 7 ~PG~GKT~la~~lA~~~~ 24 (131)
T PF07726_consen 7 VPGVGKTTLAKALARSLG 24 (131)
T ss_dssp ---HHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHHcC
Confidence 379999999999998853
No 282
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.48 E-value=0.05 Score=40.05 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+||||+|+.++..+
T Consensus 7 ~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 7 PPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999998774
No 283
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.45 E-value=0.12 Score=40.38 Aligned_cols=40 Identities=25% Similarity=0.300 Sum_probs=28.5
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCC-hHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGL-PLALITIG 144 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~-PLal~~~~ 144 (180)
..+..++|..++...-+... ..+.|++.++|. --|+.++-
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 35677888888888777766 788899999884 34444443
No 284
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.42 E-value=0.024 Score=37.13 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||+||..++.++
T Consensus 6 ~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDL 22 (107)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999988765
No 285
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.40 E-value=1.1 Score=35.36 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=31.2
Q ss_pred ceEeecCCChhhhHHHHHHH------H--HHHHHHHcCCChHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK------L--AQTVAKKCVGLPLALIT 142 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~------~--~~~i~~~c~g~PLal~~ 142 (180)
..+++.+++.++..+.+.+. . ...++..++|.|..+..
T Consensus 175 q~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 175 QIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred eEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHH
Confidence 57899999999999999987 1 26889999999965543
No 286
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.39 E-value=0.084 Score=46.95 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||+||+.+++.+
T Consensus 547 p~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 547 PTGVGKTELTKALASYF 563 (821)
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 47999999999998874
No 287
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.062 Score=44.98 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=37.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh----CCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL----SKK 76 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L----~~k 76 (180)
+||.|||-||++++-.- .| .+| ...+. .....-+...+++++..+ ..-
T Consensus 345 PPGTGKTlLARAvAGEA-~V-PFF-----~~sGS---------------------EFdEm~VGvGArRVRdLF~aAk~~A 396 (752)
T KOG0734|consen 345 PPGTGKTLLARAVAGEA-GV-PFF-----YASGS---------------------EFDEMFVGVGARRVRDLFAAAKARA 396 (752)
T ss_pred CCCCchhHHHHHhhccc-CC-CeE-----ecccc---------------------chhhhhhcccHHHHHHHHHHHHhcC
Confidence 58999999999999882 22 222 11111 222233444455555555 345
Q ss_pred cEEEEEeCCCCc
Q 046006 77 KFVLLLDDKWER 88 (180)
Q Consensus 77 ~~LlVlDdv~~~ 88 (180)
+|+|.+|+++..
T Consensus 397 PcIIFIDEiDav 408 (752)
T KOG0734|consen 397 PCIIFIDEIDAV 408 (752)
T ss_pred CeEEEEechhhh
Confidence 899999999865
No 288
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=94.34 E-value=1.3 Score=38.42 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=55.0
Q ss_pred CCCcHHHHHHHHHccccc-----ccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--
Q 046006 2 GGVGKTTLLTHINNKFLV-----SSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-- 74 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~-----~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-- 74 (180)
||+|||..+..|.+.+.. ....|+ .+.|+.-.-.+..+++..|...+... ........+.|..+..
T Consensus 431 PGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~~I~~~lsg~------~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 431 PGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYEKIWEALSGE------RVTWDAALEALNFRFTVP 503 (767)
T ss_pred CCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHHHHHHhcccC------cccHHHHHHHHHHhhccC
Confidence 799999999999885521 123343 45566555667999999999999654 2234445555555553
Q ss_pred ---CCcEEEEEeCCCCc
Q 046006 75 ---KKKFVLLLDDKWER 88 (180)
Q Consensus 75 ---~k~~LlVlDdv~~~ 88 (180)
.+.+++++|+++..
T Consensus 504 k~~~~~~VvLiDElD~L 520 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDIL 520 (767)
T ss_pred CCCCCCEEEEeccHHHH
Confidence 45799999998754
No 289
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.33 E-value=0.13 Score=39.43 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|.|||-+|+++++..
T Consensus 159 ppGTGKTm~Akalane~ 175 (368)
T COG1223 159 PPGTGKTMMAKALANEA 175 (368)
T ss_pred CCCccHHHHHHHHhccc
Confidence 58999999999999984
No 290
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.32 E-value=1 Score=38.37 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=27.2
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..++..+++.++..+.+... .+..|++.++|.+..+
T Consensus 171 ~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 171 QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45778889998888877764 5677888888877543
No 291
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.30 E-value=0.028 Score=39.49 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999999884
No 292
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.29 E-value=0.14 Score=41.97 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=45.6
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCCcCh------HHHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDG---DSWKNKNS------EEKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~------~~~~~~l~~ 71 (180)
+|+|||||++.++... ....+++. -+++ .....+++...+..-+.... ......+. ......+.+
T Consensus 165 sG~GKTtLl~~Ia~~~----~~~~gvI~-~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAE 239 (432)
T PRK06793 165 SGVGKSTLLGMIAKNA----KADINVIS-LVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATSIAE 239 (432)
T ss_pred CCCChHHHHHHHhccC----CCCeEEEE-eCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998873 22223333 3443 35666776666554332200 00111111 112333444
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ ++++.|+++||+-..
T Consensus 240 yfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 240 YFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHcCCcEEEEecchHHH
Confidence 44 478999999998654
No 293
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=94.29 E-value=0.49 Score=38.84 Aligned_cols=82 Identities=22% Similarity=0.230 Sum_probs=44.4
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~ 71 (180)
+|+|||||.+.++... ..+......++. .....++..+....-..... ......+.. .....+.+
T Consensus 154 sG~GKStLl~~I~~~~-----~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a~~~AE 228 (422)
T TIGR02546 154 AGVGKSTLLGMIARGA-----SADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAYTATAIAE 228 (422)
T ss_pred CCCChHHHHHHHhCCC-----CCCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 6999999999998873 234444444554 33555555554433221100 001111111 12233444
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ .+++.|+++|++-..
T Consensus 229 ~f~~~g~~Vl~~~Dsltr~ 247 (422)
T TIGR02546 229 YFRDQGKRVLLMMDSLTRF 247 (422)
T ss_pred HHHHCCCcEEEEEeCchHH
Confidence 44 478999999998743
No 294
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.24 E-value=0.28 Score=39.71 Aligned_cols=82 Identities=17% Similarity=0.084 Sum_probs=47.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-CCCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-SKKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~ 78 (180)
+.|+||||++..++..+. . .. ..+.+++.... ....+-+....+.++.+ .....+..++...+...- .+..=
T Consensus 214 ptGvGKTTt~akLA~~l~-~-~g-~~V~lItaDtyR~gAveQLk~yae~lgvp---v~~~~dp~dL~~al~~l~~~~~~D 287 (407)
T PRK12726 214 QTGVGKTTTLVKLGWQLL-K-QN-RTVGFITTDTFRSGAVEQFQGYADKLDVE---LIVATSPAELEEAVQYMTYVNCVD 287 (407)
T ss_pred CCCCCHHHHHHHHHHHHH-H-cC-CeEEEEeCCccCccHHHHHHHHhhcCCCC---EEecCCHHHHHHHHHHHHhcCCCC
Confidence 369999999999987742 2 22 34556665543 23344555666666554 112345666655554432 13456
Q ss_pred EEEEeCCCCc
Q 046006 79 VLLLDDKWER 88 (180)
Q Consensus 79 LlVlDdv~~~ 88 (180)
++++|-.-..
T Consensus 288 ~VLIDTAGr~ 297 (407)
T PRK12726 288 HILIDTVGRN 297 (407)
T ss_pred EEEEECCCCC
Confidence 7888887553
No 295
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.24 E-value=0.11 Score=46.29 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.||+|||++|..++...
T Consensus 208 ~pGvGKTal~~~la~~i 224 (821)
T CHL00095 208 EPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 48999999999998875
No 296
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.23 E-value=0.051 Score=41.00 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=19.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEe
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVV 32 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~ 32 (180)
|+|+||||+++.+.+.+. ..-..++-|+.
T Consensus 4 paGSGKTT~~~~~~~~~~---~~~~~~~~vNL 32 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLE---SNGRDVYIVNL 32 (238)
T ss_dssp STTSSHHHHHHHHHHHHT---TT-S-EEEEE-
T ss_pred CCCCCHHHHHHHHHHHHH---hccCCceEEEc
Confidence 689999999999998864 22234555663
No 297
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.065 Score=44.75 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+|||.||+++++..
T Consensus 284 pPGtGKT~lAkava~~~ 300 (494)
T COG0464 284 PPGTGKTLLAKAVALES 300 (494)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 58999999999999963
No 298
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.21 E-value=0.039 Score=42.07 Aligned_cols=80 Identities=18% Similarity=0.105 Sum_probs=48.3
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC-----------------CCC------CC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD-----------------GDS------WK 58 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----------------~~~------~~ 58 (180)
||+|||++|.++..... ++...++||+..+.+ .++.+...+ ++... ... ..
T Consensus 32 pGsGKT~f~~qfl~~~~---~~ge~vlyvs~~e~~--~~l~~~~~~-~g~d~~~~~~~g~l~i~d~~~~~~~~~~~~~~~ 105 (260)
T COG0467 32 PGTGKTIFALQFLYEGA---REGEPVLYVSTEESP--EELLENARS-FGWDLEVYIEKGKLAILDAFLSEKGLVSIVVGD 105 (260)
T ss_pred CCCcHHHHHHHHHHHHH---hcCCcEEEEEecCCH--HHHHHHHHH-cCCCHHHHhhcCCEEEEEccccccccccccccC
Confidence 79999999999998843 457889999877643 333333321 21110 000 01
Q ss_pred CcChHHHHHHHHHHhCC-CcEEEEEeCCCC
Q 046006 59 NKNSEEKALEIFRFLSK-KKFVLLLDDKWE 87 (180)
Q Consensus 59 ~~~~~~~~~~l~~~L~~-k~~LlVlDdv~~ 87 (180)
..+.+.+...+++..+. +..-+|+|++-.
T Consensus 106 ~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~ 135 (260)
T COG0467 106 PLDLEELLDRIREIVEKEGADRVVIDSITE 135 (260)
T ss_pred CccHHHHHHHHHHHHHHhCCCEEEEeCCch
Confidence 23455566666666642 377889999874
No 299
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=94.20 E-value=0.14 Score=42.80 Aligned_cols=82 Identities=12% Similarity=0.216 Sum_probs=44.4
Q ss_pred CCCcHHHHHHH-HHcccccccCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcC-hHH-----HHHHH
Q 046006 2 GGVGKTTLLTH-INNKFLVSSTDFDCV-IWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKN-SEE-----KALEI 69 (180)
Q Consensus 2 gGiGKTtLA~~-~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~-----~~~~l 69 (180)
.|+|||+||.. +.++ ..-+.+ +++-+++.. ...++...+...=..... ......+ ..+ ..-.+
T Consensus 171 ~g~GKt~lal~~i~~~-----~~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~ti 245 (502)
T PRK09281 171 RQTGKTAIAIDTIINQ-----KGKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAM 245 (502)
T ss_pred CCCCchHHHHHHHHHh-----cCCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 59999999644 4444 233554 777788765 455566555543221100 0011111 111 12233
Q ss_pred HHHh--CCCcEEEEEeCCCCc
Q 046006 70 FRFL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 70 ~~~L--~~k~~LlVlDdv~~~ 88 (180)
.+++ +++.+|+|+||+-..
T Consensus 246 AEyfrd~G~~VLli~DdlTr~ 266 (502)
T PRK09281 246 GEYFMDNGKDALIVYDDLSKQ 266 (502)
T ss_pred HHHHHHcCCCEEEEecCchHH
Confidence 4444 478999999998764
No 300
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=94.19 E-value=0.078 Score=37.57 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEE-----eCCCCCHHHHHHHHHHHh
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV-----VSKDLQLEKIQEIVGKKV 49 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-----~~~~~~~~~~~~~i~~~l 49 (180)
.|+||||+|..+.+-+. . |-. +... ....+.+.+++.|
T Consensus 8 iGCGKTTva~aL~~LFg----~-----wgHvQnDnI~~k-~~~~f~~~~l~~L 50 (168)
T PF08303_consen 8 IGCGKTTVALALSNLFG----E-----WGHVQNDNITGK-RKPKFIKAVLELL 50 (168)
T ss_pred CCcCHHHHHHHHHHHcC----C-----CCccccCCCCCC-CHHHHHHHHHHHH
Confidence 59999999999988753 1 322 3333 5677777777777
No 301
>PHA00729 NTP-binding motif containing protein
Probab=94.18 E-value=0.026 Score=42.14 Aligned_cols=40 Identities=18% Similarity=0.031 Sum_probs=27.6
Q ss_pred cceEeecCCChhhhHHHHHHH--HHHHHHHH---cCCChHHHHHH
Q 046006 104 NKNFKVECLSDNDAWELLRQK--LAQTVAKK---CVGLPLALITI 143 (180)
Q Consensus 104 ~~~~~l~~L~~~~a~~Lf~~~--~~~~i~~~---c~g~PLal~~~ 143 (180)
...+.+.++++++..+.++.+ ...+|.+. =++-|.++.-+
T Consensus 119 ~~l~il~~ls~edL~~~Lr~Rg~~~~kI~en~~~~~~~~~~~~~~ 163 (226)
T PHA00729 119 VSAVIFTTPSPEDLAFYLREKGWYQIRVTMVNRKTMTARATLYSK 163 (226)
T ss_pred CcEEEEecCCHHHHHHHHHhCCCcHHHhhhcccCcccchhhHHHH
Confidence 357889999999999999998 34444432 34566665543
No 302
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.18 E-value=0.18 Score=41.33 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|..++..+
T Consensus 108 ~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998765
No 303
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.18 E-value=0.21 Score=41.97 Aligned_cols=80 Identities=14% Similarity=0.069 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC------------CCCCCCcChHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD------------GDSWKNKNSEEKALEI 69 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~~~~~l 69 (180)
+|+|||+||.+++.... ..-..++|++...+ ..++.+.. +.++.+. ...+...+.++....+
T Consensus 282 ~G~GKT~l~~~~~~~~~---~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~i 355 (509)
T PRK09302 282 TGTGKTLLASKFAEAAC---RRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYGLEDHLIII 355 (509)
T ss_pred CCCCHHHHHHHHHHHHH---hCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCCHHHHHHHH
Confidence 79999999999987732 23456788876553 44444433 4444320 0011122445666667
Q ss_pred HHHhC-CCcEEEEEeCCCC
Q 046006 70 FRFLS-KKKFVLLLDDKWE 87 (180)
Q Consensus 70 ~~~L~-~k~~LlVlDdv~~ 87 (180)
.+.+. .+.-++|+|.+..
T Consensus 356 ~~~i~~~~~~~vVIDslt~ 374 (509)
T PRK09302 356 KREIEEFKPSRVAIDPLSA 374 (509)
T ss_pred HHHHHHcCCCEEEEcCHHH
Confidence 66664 3555899999754
No 304
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=94.16 E-value=0.14 Score=42.79 Aligned_cols=82 Identities=15% Similarity=0.260 Sum_probs=45.4
Q ss_pred CCCcHHHHH-HHHHcccccccCCCCeE-EEEEeCCCC-CHHHHHHHHHHHhCCCCC----CCCCCcChHH-----HHHHH
Q 046006 2 GGVGKTTLL-THINNKFLVSSTDFDCV-IWIVVSKDL-QLEKIQEIVGKKVGLLDG----DSWKNKNSEE-----KALEI 69 (180)
Q Consensus 2 gGiGKTtLA-~~~~~~~~~~~~~f~~~-~wv~~~~~~-~~~~~~~~i~~~l~~~~~----~~~~~~~~~~-----~~~~l 69 (180)
+|+|||+|| ..+.++ ..-|.+ +++-+++.. ...++...+...=..... .........+ ....+
T Consensus 171 ~g~GKt~Lal~~i~~~-----~~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~ap~~a~ai 245 (502)
T PRK13343 171 RQTGKTAIAIDAIINQ-----KDSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLAPFAGCAI 245 (502)
T ss_pred CCCCccHHHHHHHHhh-----cCCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHHHHHHHHH
Confidence 699999996 455554 234554 777788765 455666665543211100 0001111111 12234
Q ss_pred HHHh--CCCcEEEEEeCCCCc
Q 046006 70 FRFL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 70 ~~~L--~~k~~LlVlDdv~~~ 88 (180)
.+++ +++++|+|+||+...
T Consensus 246 AEyfrd~G~~VLlv~DdlTr~ 266 (502)
T PRK13343 246 AEYFRDQGQDALIVYDDLSKH 266 (502)
T ss_pred HHHHHhCCCCEEEEecchHHH
Confidence 4555 588999999998754
No 305
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.15 E-value=0.3 Score=34.54 Aligned_cols=77 Identities=18% Similarity=0.159 Sum_probs=39.4
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEE-------eCCCCCH--HHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV-------VSKDLQL--EKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRF 72 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-------~~~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 72 (180)
.|.|||||++.++.... ...+.+++. +.+.... ..+...+... . ...-+..+...-.+.+.
T Consensus 36 nGsGKSTLl~~l~G~~~----~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~---~~~LS~G~~~rv~lara 105 (166)
T cd03223 36 SGTGKSSLFRALAGLWP----WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---W---DDVLSGGEQQRLAFARL 105 (166)
T ss_pred CCCCHHHHHHHHhcCCC----CCCceEEECCCceEEEECCCCccccccHHHHhhcc---C---CCCCCHHHHHHHHHHHH
Confidence 69999999999988742 223333321 2222211 1233332210 1 11122233334445566
Q ss_pred hCCCcEEEEEeCCCCc
Q 046006 73 LSKKKFVLLLDDKWER 88 (180)
Q Consensus 73 L~~k~~LlVlDdv~~~ 88 (180)
+-.++=++++|+--..
T Consensus 106 l~~~p~~lllDEPt~~ 121 (166)
T cd03223 106 LLHKPKFVFLDEATSA 121 (166)
T ss_pred HHcCCCEEEEECCccc
Confidence 6677778899986443
No 306
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.15 E-value=0.37 Score=39.48 Aligned_cols=51 Identities=25% Similarity=0.282 Sum_probs=26.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLL 52 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 52 (180)
..|+||||+...++... ......+.+..+.... .....+-+....+.++.+
T Consensus 199 pnG~GKTTtlakLA~~~-~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 199 PTGVGKTTTTAKLAARA-VIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred CCCCCHHHHHHHHHHHH-HHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence 36999999999887652 1111223334444322 233444455555555543
No 307
>PTZ00301 uridine kinase; Provisional
Probab=94.15 E-value=0.028 Score=41.60 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||||+.+...+
T Consensus 11 ~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 11 ASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CCcCCHHHHHHHHHHHH
Confidence 37999999999987764
No 308
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.14 E-value=1.8 Score=34.40 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=28.2
Q ss_pred ceEeecCCChhhhHHHHHHH------HHHHHHHHcCCChHH
Q 046006 105 KNFKVECLSDNDAWELLRQK------LAQTVAKKCVGLPLA 139 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~------~~~~i~~~c~g~PLa 139 (180)
..+.+.+++.++..+.+.+. .+..++..++|.|..
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~~~~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREVTMSQDALLAALRLSAGAPGA 200 (334)
T ss_pred ccccCCCCCHHHHHHHHHHccCCCHHHHHHHHHHcCCCHHH
Confidence 46789999999999888654 456788899999963
No 309
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.13 E-value=0.28 Score=40.29 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=41.8
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCH-HHHHHHHHHHhCCCCCC---CCCCcChH------HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQL-EKIQEIVGKKVGLLDGD---SWKNKNSE------EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~i~~~l~~~~~~---~~~~~~~~------~~~~~l~~ 71 (180)
+|+|||||++.++... .-+..+..-+++...- .++....+..- .+... .....++. .....+.+
T Consensus 166 sG~GKStLl~~i~~~~-----~~~v~vi~~iGergrev~e~~~~~l~~~-l~~tvvV~atsddsp~~R~~~~~~a~~iAE 239 (434)
T PRK08472 166 SGVGKSTLMGMIVKGC-----LAPIKVVALIGERGREIPEFIEKNLGGD-LENTVIVVATSDDSPLMRKYGAFCAMSVAE 239 (434)
T ss_pred CCCCHHHHHHHHhhcc-----CCCEEEEEeeCccchhHHHHHHHHhcCc-ccceEEEEECCCCCHHHhhHHHHHHHHHHH
Confidence 6999999999998762 2344455555554432 33333222110 00000 00111111 11233444
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++.+|+++||+-..
T Consensus 240 yFrd~G~~Vll~~DslTr~ 258 (434)
T PRK08472 240 YFKNQGLDVLFIMDSVTRF 258 (434)
T ss_pred HHHHcCCCEEEecccchHH
Confidence 44 588999999998754
No 310
>PRK06547 hypothetical protein; Provisional
Probab=94.12 E-value=0.033 Score=39.88 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 23 ~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 23 RSGSGKTTLAGALAART 39 (172)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 311
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.12 E-value=0.029 Score=40.22 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 11 ~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 11 GPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999998764
No 312
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.09 E-value=0.47 Score=33.83 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=39.3
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCC--CcEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSK--KKFV 79 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~--k~~L 79 (180)
+|+|||++|.++.... ....+++.-.+.++. ++...|.+.-... .... ...+....+.+.+.. +.-.
T Consensus 8 ~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w---~t~E~~~~l~~~l~~~~~~~~ 76 (169)
T cd00544 8 ARSGKSRFAERLAAEL------GGPVTYIATAEAFDD-EMAERIARHRKRR-PAHW---RTIETPRDLVSALKELDPGDV 76 (169)
T ss_pred CCCCHHHHHHHHHHhc------CCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCc---eEeecHHHHHHHHHhcCCCCE
Confidence 6999999999997651 135667766665544 3444444422111 1111 122222334444421 3347
Q ss_pred EEEeCCC
Q 046006 80 LLLDDKW 86 (180)
Q Consensus 80 lVlDdv~ 86 (180)
+++|.+.
T Consensus 77 VLIDclt 83 (169)
T cd00544 77 VLIDCLT 83 (169)
T ss_pred EEEEcHh
Confidence 9999864
No 313
>PRK04040 adenylate kinase; Provisional
Probab=94.08 E-value=0.03 Score=40.67 Aligned_cols=17 Identities=47% Similarity=0.667 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.+...+
T Consensus 10 ~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 10 VPGVGKTTVLNKALEKL 26 (188)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998885
No 314
>PRK14532 adenylate kinase; Provisional
Probab=94.07 E-value=0.032 Score=40.22 Aligned_cols=17 Identities=18% Similarity=0.104 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+||||+|+.++..+
T Consensus 8 ~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 8 PPAAGKGTQAKRLVEER 24 (188)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999998874
No 315
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=94.07 E-value=0.033 Score=35.98 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 9 gG~Gkst~~~~la~~~~ 25 (104)
T cd02042 9 GGVGKTTTAVNLAAALA 25 (104)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 89999999999887753
No 316
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.06 E-value=0.1 Score=46.54 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||.||+.++..+
T Consensus 604 p~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 604 PSGVGKTETALALAELL 620 (852)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999987764
No 317
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.05 E-value=0.25 Score=34.12 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=18.6
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWI 30 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv 30 (180)
.|.|||||++.++... ....+.+++
T Consensus 35 nGsGKStLl~~l~G~~----~~~~G~i~~ 59 (144)
T cd03221 35 NGAGKSTLLKLIAGEL----EPDEGIVTW 59 (144)
T ss_pred CCCCHHHHHHHHcCCC----CCCceEEEE
Confidence 6999999999998874 233555554
No 318
>PRK13949 shikimate kinase; Provisional
Probab=94.05 E-value=0.032 Score=39.74 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
|+|+||||+++.++..+
T Consensus 9 ~~GsGKstl~~~La~~l 25 (169)
T PRK13949 9 YMGAGKTTLGKALAREL 25 (169)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999885
No 319
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.03 E-value=0.035 Score=39.66 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.++..+
T Consensus 9 ~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 9 PSGAGKDTLLDYARARL 25 (179)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999998874
No 320
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=94.03 E-value=0.064 Score=40.85 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++.-+.
T Consensus 10 GGvGKTT~~~nLA~~La 26 (270)
T cd02040 10 GGIGKSTTTQNLSAALA 26 (270)
T ss_pred CcCCHHHHHHHHHHHHH
Confidence 89999999999988864
No 321
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=94.02 E-value=0.032 Score=39.48 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 3 ~sGsGKSTla~~la~~l 19 (163)
T PRK11545 3 VSGSGKSAVASEVAHQL 19 (163)
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 47999999999998885
No 322
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.02 E-value=0.16 Score=45.34 Aligned_cols=17 Identities=41% Similarity=0.493 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||+||+.+++..
T Consensus 606 p~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 606 PTGVGKTELCKALANFM 622 (857)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 323
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=94.00 E-value=0.088 Score=40.13 Aligned_cols=17 Identities=29% Similarity=0.741 Sum_probs=15.6
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 11 GGvGKTT~a~nLA~~La 27 (264)
T PRK13231 11 GGIGKSTTVSNMAAAYS 27 (264)
T ss_pred CCCcHHHHHHHHhcccC
Confidence 89999999999999864
No 324
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=93.99 E-value=0.2 Score=39.50 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=34.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCC-------CeEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDF-------DCVIWIVVSK-DLQLEKIQEIVGKKVGLL 52 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f-------~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 52 (180)
.||+|||||+..++=.+..-++-| ..+++|+... ..++..-++.++.+++.+
T Consensus 97 dsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLs 156 (402)
T COG3598 97 DSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLS 156 (402)
T ss_pred CCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCC
Confidence 389999999988764432222333 3566776543 346666777888888876
No 325
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=93.99 E-value=0.21 Score=41.16 Aligned_cols=82 Identities=22% Similarity=0.244 Sum_probs=42.6
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~ 71 (180)
+|+|||||.+.+.... .. +..+...++.. ....++....+..-..... ......++. ...-.+.+
T Consensus 172 sG~GKStLl~~I~~~~----~~-~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE 246 (440)
T TIGR01026 172 SGVGKSTLLGMIARNT----EA-DVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSDQSPLLRLKGAYVATAIAE 246 (440)
T ss_pred CCCCHHHHHHHHhCCC----CC-CEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998873 22 33344444443 3444555444432111100 001111111 11223334
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++.+|+++||+-..
T Consensus 247 ~frd~G~~Vll~~DslTr~ 265 (440)
T TIGR01026 247 YFRDQGKDVLLLMDSVTRF 265 (440)
T ss_pred HHHHCCCCEEEEEeChHHH
Confidence 44 588999999998653
No 326
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.99 E-value=0.035 Score=40.79 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||||+.++..+
T Consensus 14 ~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 14 GSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998875
No 327
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.97 E-value=0.033 Score=40.93 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||||+.+...+
T Consensus 14 ~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 14 GSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999998875
No 328
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.96 E-value=0.44 Score=39.01 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=43.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~ 71 (180)
+|+|||||.+.+++.. +-+..+..-+++.. ...++....+.+-+.... ......+.. ...-.+.+
T Consensus 146 sG~GKTtLl~~i~~~~-----~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiAE 220 (413)
T TIGR03497 146 SGVGKSTLLGMIARNA-----KADINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAFTATAIAE 220 (413)
T ss_pred CCCCHHHHHHHHhCCC-----CCCeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999888763 12333333345433 455555554433211100 001111111 12233444
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++.+|+++||+-..
T Consensus 221 yfr~~G~~Vll~~Dsltr~ 239 (413)
T TIGR03497 221 YFRDQGKDVLLMMDSVTRF 239 (413)
T ss_pred HHHHCCCCEEEEEcCcHHH
Confidence 55 488999999998653
No 329
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.95 E-value=0.7 Score=36.58 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=25.5
Q ss_pred ceEeecCCChhhhHHHHHHH---HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK---LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~---~~~~i~~~c~g~PLal 140 (180)
..+.+.+++.++..+.+.+. .....+..++|.|+..
T Consensus 165 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~l~~~~g~p~~~ 203 (325)
T PRK08699 165 RKMVLPAPSHEEALAYLRERGVAEPEERLAFHSGAPLFD 203 (325)
T ss_pred hhhcCCCCCHHHHHHHHHhcCCCcHHHHHHHhCCChhhh
Confidence 56788999999999888765 2222346788988643
No 330
>PRK06696 uridine kinase; Validated
Probab=93.94 E-value=0.036 Score=41.29 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||||+.+...+
T Consensus 30 ~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 30 ITASGKTTFADELAEEI 46 (223)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999886
No 331
>PRK13975 thymidylate kinase; Provisional
Probab=93.87 E-value=0.035 Score=40.21 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
+.|+||||+|+.++..+.
T Consensus 10 ~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 10 IDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 479999999999999863
No 332
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.87 E-value=0.094 Score=40.10 Aligned_cols=35 Identities=31% Similarity=0.346 Sum_probs=22.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKI 41 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 41 (180)
.+|+|||+||+.++.... . ..+.++.....+..++
T Consensus 29 ~~GtGKT~lA~~la~~lg---~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 29 PAGTGKTTLAMHVARKRD---R---PVMLINGDAELTTSDL 63 (262)
T ss_pred CCCCCHHHHHHHHHHHhC---C---CEEEEeCCccCCHHHH
Confidence 479999999999987531 1 2344555544444444
No 333
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.84 E-value=0.3 Score=34.87 Aligned_cols=77 Identities=10% Similarity=0.065 Sum_probs=39.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCC-CcChHHHHHHHHHHhCCCcEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWK-NKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~-~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
+|+|||++|..+..... . ..+++.-.. ..-.++...|....... ..... .....++...+.....+ .-++
T Consensus 10 ~~sGKS~~a~~l~~~~~---~---~~~~iat~~-~~~~e~~~ri~~h~~~R-~~~w~t~E~~~~l~~~i~~~~~~-~~~V 80 (170)
T PRK05800 10 ARSGKSRFAERLAAQSG---L---QVLYIATAQ-PFDDEMAARIAHHRQRR-PAHWQTVEEPLDLAELLRADAAP-GRCV 80 (170)
T ss_pred CCccHHHHHHHHHHHcC---C---CcEeCcCCC-CChHHHHHHHHHHHhcC-CCCCeEecccccHHHHHHhhcCC-CCEE
Confidence 79999999999987631 1 133443333 33345556665544322 11111 11122344444443433 3378
Q ss_pred EEeCCCC
Q 046006 81 LLDDKWE 87 (180)
Q Consensus 81 VlDdv~~ 87 (180)
++|.+..
T Consensus 81 lID~Lt~ 87 (170)
T PRK05800 81 LVDCLTT 87 (170)
T ss_pred EehhHHH
Confidence 8888643
No 334
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.84 E-value=0.31 Score=35.04 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
.|+|||||.+.++.-.
T Consensus 34 nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 34 NGTGKTTAVKILAGQL 49 (177)
T ss_pred CCChHHHHHHHHHcCC
Confidence 6999999999998764
No 335
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.84 E-value=0.18 Score=41.99 Aligned_cols=85 Identities=16% Similarity=0.212 Sum_probs=50.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC-----C-----CCCCcChH------H
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG-----D-----SWKNKNSE------E 64 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~-----~~~~~~~~------~ 64 (180)
+|+|||+|+..+...... .+=+.++++-+++.. ...++...+...-..... . .....+.. -
T Consensus 170 ~GvGKs~L~~~~~~~~~~--~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~p~~~R~~a~~ 247 (494)
T CHL00060 170 AGVGKTVLIMELINNIAK--AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGL 247 (494)
T ss_pred CCCChhHHHHHHHHHHHH--hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCCCHHHHHHHHH
Confidence 699999999988776321 222678888887765 456677666652111100 0 01111111 2
Q ss_pred HHHHHHHHhC--CC-cEEEEEeCCCCc
Q 046006 65 KALEIFRFLS--KK-KFVLLLDDKWER 88 (180)
Q Consensus 65 ~~~~l~~~L~--~k-~~LlVlDdv~~~ 88 (180)
..-.+.++++ ++ .+||++||+-..
T Consensus 248 ~A~tiAEyfrd~g~~~VLll~DslTR~ 274 (494)
T CHL00060 248 TALTMAEYFRDVNKQDVLLFIDNIFRF 274 (494)
T ss_pred HHHHHHHHHHHcCCCCEEEEcccchHH
Confidence 2344667773 44 999999998754
No 336
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=93.82 E-value=0.38 Score=39.51 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChH------HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSE------EKALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~------~~~~~l~~ 71 (180)
+|+|||+|+..++++. .-+.+++.-+++.. ...++..++...=..+.. ......+.. ...-.+.+
T Consensus 149 aGvgk~~L~~~ia~~~-----~~~v~Vfa~iGeR~rE~~ef~~~~~~~~~l~rtvlv~~~adep~~~R~~~~~~AltiAE 223 (436)
T PRK02118 149 SGEPYNALLARIALQA-----EADIIILGGMGLTFDDYLFFKDTFENAGALDRTVMFIHTASDPPVECLLVPDMALAVAE 223 (436)
T ss_pred CCCCHHHHHHHHHHhh-----CCCeEEEEEeccchhHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 5999999999998883 22567888888765 444555555433211100 001111111 12334555
Q ss_pred HhC---CCcEEEEEeCCCCc
Q 046006 72 FLS---KKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L~---~k~~LlVlDdv~~~ 88 (180)
+++ ++.+|+++||+-..
T Consensus 224 yfrd~g~~~VLli~DdlTr~ 243 (436)
T PRK02118 224 KFALEGKKKVLVLLTDMTNF 243 (436)
T ss_pred HHHhcCCCCEEEeccCchHH
Confidence 553 38999999999764
No 337
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.76 E-value=0.038 Score=38.23 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 7 ~~GsGKstla~~la~~l 23 (154)
T cd00464 7 MMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998774
No 338
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.72 E-value=0.038 Score=40.11 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
+|+||||||+.+...+
T Consensus 8 sgsGKTtla~~l~~~~ 23 (187)
T cd02024 8 TNSGKTTLAKLLQRIL 23 (187)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 7999999999998875
No 339
>PRK14530 adenylate kinase; Provisional
Probab=93.65 E-value=0.039 Score=40.79 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 11 ~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 11 APGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998775
No 340
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.63 E-value=0.26 Score=41.37 Aligned_cols=31 Identities=13% Similarity=0.126 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
+|+|||+||.+++.... .++-..++|++...
T Consensus 40 pGsGKT~l~~qf~~~~~--~~~ge~~lyis~ee 70 (509)
T PRK09302 40 AGTGKTLFALQFLVNGI--KRFDEPGVFVTFEE 70 (509)
T ss_pred CCCCHHHHHHHHHHHHH--HhcCCCEEEEEccC
Confidence 79999999999876532 12234567776554
No 341
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.62 E-value=0.045 Score=38.97 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 12 ~~GsGKST~a~~la~~l 28 (175)
T PRK00889 12 LSGAGKTTIARALAEKL 28 (175)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 48999999999999885
No 342
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.62 E-value=0.045 Score=39.81 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||||+.+...+
T Consensus 7 ~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 7 GSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 343
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.61 E-value=0.041 Score=47.31 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.++..+
T Consensus 118 P~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 118 PSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999874
No 344
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.57 E-value=0.043 Score=37.57 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 7 ~~GsGKst~a~~la~~~ 23 (147)
T cd02020 7 PAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999874
No 345
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=93.53 E-value=0.15 Score=42.06 Aligned_cols=82 Identities=16% Similarity=0.122 Sum_probs=41.7
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC---CCCCCCcChHH------HHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLD---GDSWKNKNSEE------KALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~------~~~~l~~ 71 (180)
+|+|||||.+.++... +.+.++...+.... ...++.+.+...-..+. .......+... ..-.+.+
T Consensus 184 sG~GKTTLL~~Ia~~~-----~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ad~~~~~r~~~~~~a~tiAE 258 (455)
T PRK07960 184 SGVGKSVLLGMMARYT-----QADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAE 258 (455)
T ss_pred CCCCccHHHHHHhCCC-----CCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998773 22334443343322 44444444332111100 00111122211 1223444
Q ss_pred Hh--CCCcEEEEEeCCCCc
Q 046006 72 FL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L--~~k~~LlVlDdv~~~ 88 (180)
++ +++.+|+++||+-..
T Consensus 259 yfrd~G~~Vll~~DslTr~ 277 (455)
T PRK07960 259 DFRDRGQHVLLIMDSLTRY 277 (455)
T ss_pred HHHHcCCCeEEEecchhHH
Confidence 44 488999999998654
No 346
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.52 E-value=0.37 Score=37.20 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=30.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEe---------CCCCCHHHH--HHHHHHHhCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVV---------SKDLQLEKI--QEIVGKKVGLL 52 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~---------~~~~~~~~~--~~~i~~~l~~~ 52 (180)
|.|+||||..+.+..+.. ..+....-|++ .-+.++++. .+++.++.+..
T Consensus 27 MAGSGKTTF~QrL~~hl~---~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LG 86 (366)
T KOG1532|consen 27 MAGSGKTTFMQRLNSHLH---AKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLG 86 (366)
T ss_pred cCCCCchhHHHHHHHHHh---hccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCC
Confidence 789999999999988864 22322333332 113355553 56778887664
No 347
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.51 E-value=0.041 Score=38.21 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+||||+|+.++..+
T Consensus 4 ~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 4 PPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHhc
Confidence 58999999999999985
No 348
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.48 E-value=0.16 Score=35.89 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=20.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIV 31 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~ 31 (180)
.|+|||||.+.++... ....+.+++.
T Consensus 35 nGsGKSTLl~~i~G~~----~~~~G~v~~~ 60 (163)
T cd03216 35 NGAGKSTLMKILSGLY----KPDSGEILVD 60 (163)
T ss_pred CCCCHHHHHHHHhCCC----CCCCeEEEEC
Confidence 6999999999998874 3456666654
No 349
>PRK13946 shikimate kinase; Provisional
Probab=93.45 E-value=0.048 Score=39.34 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
|+|+||||+++.+...+
T Consensus 18 ~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 18 LMGAGKSTVGRRLATML 34 (184)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 68999999999999885
No 350
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.42 E-value=0.045 Score=41.44 Aligned_cols=17 Identities=35% Similarity=0.665 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 7 ~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 7 LPGVGKSTFSKELAKKL 23 (249)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998875
No 351
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.42 E-value=0.33 Score=37.64 Aligned_cols=75 Identities=11% Similarity=0.023 Sum_probs=54.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEE-EEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIW-IVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~w-v~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
+.|+|||+-++.+++..+ ..| +..+..++...++..++...... ......+....+...+++..-+
T Consensus 102 ~~g~gKt~a~~~y~~s~p--------~~~l~~~~p~~~a~~~i~~i~~~~~~~-----~~~~~~d~~~~~~~~l~~~~~~ 168 (297)
T COG2842 102 YAGLGKTQAAKNYAPSNP--------NALLIEADPSYTALVLILIICAAAFGA-----TDGTINDLTERLMIRLRDTVRL 168 (297)
T ss_pred cccchhHHHHHhhcccCc--------cceeecCChhhHHHHHHHHHHHHHhcc-----cchhHHHHHHHHHHHHccCcce
Confidence 479999999999998853 344 45666777777777776665432 2234566777777788899999
Q ss_pred EEEeCCCCc
Q 046006 80 LLLDDKWER 88 (180)
Q Consensus 80 lVlDdv~~~ 88 (180)
++.|+.+..
T Consensus 169 iivDEA~~L 177 (297)
T COG2842 169 IIVDEADRL 177 (297)
T ss_pred eeeehhhcc
Confidence 999998775
No 352
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=0.23 Score=38.87 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=39.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~L 79 (180)
+||.||+.||++|+..- + .-|.++|++ ++...... ..+.+...|.+.-+ +++.+
T Consensus 174 PPGTGKSYLAKAVATEA----n----STFFSvSSS--------DLvSKWmG---------ESEkLVknLFemARe~kPSI 228 (439)
T KOG0739|consen 174 PPGTGKSYLAKAVATEA----N----STFFSVSSS--------DLVSKWMG---------ESEKLVKNLFEMARENKPSI 228 (439)
T ss_pred CCCCcHHHHHHHHHhhc----C----CceEEeehH--------HHHHHHhc---------cHHHHHHHHHHHHHhcCCcE
Confidence 58999999999999872 1 223344432 22222211 13456666666554 78999
Q ss_pred EEEeCCCCc
Q 046006 80 LLLDDKWER 88 (180)
Q Consensus 80 lVlDdv~~~ 88 (180)
|.+|.++..
T Consensus 229 IFiDEiDsl 237 (439)
T KOG0739|consen 229 IFIDEIDSL 237 (439)
T ss_pred EEeehhhhh
Confidence 999999854
No 353
>PF13245 AAA_19: Part of AAA domain
Probab=93.40 E-value=0.1 Score=32.04 Aligned_cols=16 Identities=38% Similarity=0.326 Sum_probs=10.9
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
.||.|||+++.+....
T Consensus 18 ~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAE 33 (76)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4899999655554444
No 354
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.39 E-value=0.049 Score=39.28 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 7 ~pGsGKst~a~~La~~~ 23 (194)
T cd01428 7 PPGSGKGTQAERLAKKY 23 (194)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999998874
No 355
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.38 E-value=0.053 Score=38.93 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=44.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEE-------eCC--CCCHHHHHHHH------HHHhCCCC--CCCCCCcChH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV-------VSK--DLQLEKIQEIV------GKKVGLLD--GDSWKNKNSE 63 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-------~~~--~~~~~~~~~~i------~~~l~~~~--~~~~~~~~~~ 63 (180)
++|.||||+|..+...+. ..--...-+. ++. .|+.++-..+| ++.+.-.. .-..-.+...
T Consensus 31 LSGsGKSTiA~ale~~L~---~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviva~ISP~r 107 (197)
T COG0529 31 LSGSGKSTIANALEEKLF---AKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIVAFISPYR 107 (197)
T ss_pred CCCCCHHHHHHHHHHHHH---HcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEEEeeCccH
Confidence 589999999999998863 2221222222 111 23333322222 23332110 0011233455
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCC
Q 046006 64 EKALEIFRFLSKKKFVLLLDDKW 86 (180)
Q Consensus 64 ~~~~~l~~~L~~k~~LlVlDdv~ 86 (180)
+-.+..++.+...+|+=|+=|+.
T Consensus 108 ~~R~~aR~~~~~~~FiEVyV~~p 130 (197)
T COG0529 108 EDRQMARELLGEGEFIEVYVDTP 130 (197)
T ss_pred HHHHHHHHHhCcCceEEEEeCCC
Confidence 66677888888888988887764
No 356
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=2 Score=37.65 Aligned_cols=63 Identities=25% Similarity=0.227 Sum_probs=39.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-CCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-SKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~L 79 (180)
+||+|||-||.+++... . .-++++-.+ +++...-.. .++..+.+.+.- .-++|+
T Consensus 709 ppGcGKT~la~a~a~~~-----~---~~fisvKGP--------ElL~KyIGa---------SEq~vR~lF~rA~~a~PCi 763 (952)
T KOG0735|consen 709 PPGCGKTLLASAIASNS-----N---LRFISVKGP--------ELLSKYIGA---------SEQNVRDLFERAQSAKPCI 763 (952)
T ss_pred CCCCcHHHHHHHHHhhC-----C---eeEEEecCH--------HHHHHHhcc---------cHHHHHHHHHHhhccCCeE
Confidence 58999999999998873 1 335555432 233332121 234444444444 468999
Q ss_pred EEEeCCCCc
Q 046006 80 LLLDDKWER 88 (180)
Q Consensus 80 lVlDdv~~~ 88 (180)
|.||+.++.
T Consensus 764 LFFDEfdSi 772 (952)
T KOG0735|consen 764 LFFDEFDSI 772 (952)
T ss_pred EEecccccc
Confidence 999999875
No 357
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.37 E-value=0.049 Score=42.26 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+..++
T Consensus 10 ~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 10 VPGSGKSTWAREFAAKN 26 (300)
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 48999999999998874
No 358
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.37 E-value=0.052 Score=38.69 Aligned_cols=17 Identities=47% Similarity=0.665 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||.+.+++.+
T Consensus 7 ~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 7 PPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp -TTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 37999999999998876
No 359
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=93.33 E-value=0.22 Score=37.60 Aligned_cols=16 Identities=38% Similarity=0.555 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
||+|||+.|..++..+
T Consensus 12 GGvGKSt~a~~la~~l 27 (241)
T PRK13886 12 GGVGKSFIAATIAQYK 27 (241)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 8999999999988765
No 360
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=93.33 E-value=0.052 Score=38.47 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 9 gG~GKtt~a~~la~~l~ 25 (179)
T cd02036 9 GGVGKTTTTANLGTALA 25 (179)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999988763
No 361
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=93.32 E-value=0.049 Score=38.57 Aligned_cols=17 Identities=35% Similarity=0.630 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 9 gG~GKTt~a~~LA~~la 25 (169)
T cd02037 9 GGVGKSTVAVNLALALA 25 (169)
T ss_pred CcCChhHHHHHHHHHHH
Confidence 89999999999988763
No 362
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.32 E-value=0.46 Score=41.79 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=42.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
+.|+||||.+..++..+. .......+..++... .....+-+....+.++.+ . ....+.+++...+. .++++. +
T Consensus 193 pnGvGKTTTiaKLA~~~~-~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvp-v--~~~~~~~~l~~al~-~~~~~D-~ 266 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCV-AREGADQLALLTTDSFRIGALEQLRIYGRILGVP-V--HAVKDAADLRFALA-ALGDKH-L 266 (767)
T ss_pred CCCCcHHHHHHHHHhhHH-HHcCCCeEEEecCcccchHHHHHHHHHHHhCCCC-c--cccCCHHHHHHHHH-HhcCCC-E
Confidence 469999999999987752 111112344554332 223445566666666654 1 12234455444443 334443 5
Q ss_pred EEEeCCC
Q 046006 80 LLLDDKW 86 (180)
Q Consensus 80 lVlDdv~ 86 (180)
+++|=.-
T Consensus 267 VLIDTAG 273 (767)
T PRK14723 267 VLIDTVG 273 (767)
T ss_pred EEEeCCC
Confidence 6666654
No 363
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=93.29 E-value=1 Score=38.41 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=48.7
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCC----------CCCCcChHHH-----
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDGD----------SWKNKNSEEK----- 65 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~----------~~~~~~~~~~----- 65 (180)
.|+|||+|+.+++++ .+-|.++++-+++.. ...+++.++-+........ ...+.+....
T Consensus 236 ~G~GKTvl~~~iak~-----a~adivVyvg~GERg~E~~e~l~ef~~l~dp~~g~~~m~RTvlVanTSn~Pv~aR~~s~y 310 (586)
T PRK04192 236 FGSGKTVTQHQLAKW-----ADADIVIYVGCGERGNEMTEVLEEFPELIDPKTGRPLMERTVLIANTSNMPVAAREASIY 310 (586)
T ss_pred CCCCHHHHHHHHHhc-----CCCCEEEEEEcCcChHHHHHHHHHHHhhcccccccccceeEEEEEECCCCCHHHHHHHHH
Confidence 599999999999988 244788888888765 4555666654432211000 1112222211
Q ss_pred -HHHHHHHh--CCCcEEEEEeCCCC
Q 046006 66 -ALEIFRFL--SKKKFVLLLDDKWE 87 (180)
Q Consensus 66 -~~~l~~~L--~~k~~LlVlDdv~~ 87 (180)
.-.+.+++ .++.+|+++|+...
T Consensus 311 tgiTiAEYfRd~G~~Vllm~DStSR 335 (586)
T PRK04192 311 TGITIAEYYRDMGYDVLLMADSTSR 335 (586)
T ss_pred HHHHHHHHHHHCCCCEEEEecChHH
Confidence 22234444 48899999999854
No 364
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.29 E-value=0.095 Score=42.84 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||+||+.+...+
T Consensus 58 p~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 58 PTGVGKTEIARRLAKLA 74 (443)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998875
No 365
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.28 E-value=0.095 Score=41.74 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=42.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
..|+||||+.+.+.+... ......++.. ..+... ..... ..+-.. ... ..+.......++..|+..+=.+
T Consensus 130 ~tGSGKTT~l~al~~~i~---~~~~~~i~ti-Edp~E~--~~~~~-~~~i~q--~ev-g~~~~~~~~~l~~~lr~~pd~i 199 (343)
T TIGR01420 130 PTGSGKSTTLASMIDYIN---KNAAGHIITI-EDPIEY--VHRNK-RSLINQ--REV-GLDTLSFANALRAALREDPDVI 199 (343)
T ss_pred CCCCCHHHHHHHHHHhhC---cCCCCEEEEE-cCChhh--hccCc-cceEEc--ccc-CCCCcCHHHHHHHhhccCCCEE
Confidence 369999999999887642 3344455432 221111 00000 000000 000 1112345666778888889999
Q ss_pred EEeCCCCccc
Q 046006 81 LLDDKWERVD 90 (180)
Q Consensus 81 VlDdv~~~~~ 90 (180)
++|++.+.+.
T Consensus 200 ~vgEird~~~ 209 (343)
T TIGR01420 200 LIGEMRDLET 209 (343)
T ss_pred EEeCCCCHHH
Confidence 9999987643
No 366
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.26 E-value=0.18 Score=36.25 Aligned_cols=17 Identities=35% Similarity=0.726 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+.|+||||+++.+.+.+
T Consensus 8 ~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 8 IDGAGKTTLIELLAERL 24 (200)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 46999999999999886
No 367
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=93.23 E-value=0.096 Score=40.03 Aligned_cols=17 Identities=35% Similarity=0.749 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 11 GGVGKTT~~~nLA~~la 27 (270)
T PRK13185 11 GGIGKSTTSSNLSAAFA 27 (270)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999888764
No 368
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.23 E-value=0.12 Score=42.32 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||++|+.++...
T Consensus 55 ppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 55 PTGVGKTEIARRLAKLA 71 (441)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998885
No 369
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.21 E-value=0.25 Score=38.41 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=39.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC----CCCCCCcChHHHHHHHHHHhCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD----GDSWKNKNSEEKALEIFRFLSKK 76 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~~~~~l~~~L~~k 76 (180)
.+|+|||||...+.+.+. .... ...+. ....+..+ ...++..+.+- ....--.+.......+.......
T Consensus 112 ~pGsGKTTLl~~l~~~l~---~~~~-~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~~L~~~~ 184 (290)
T PRK10463 112 SPGSGKTTLLTETLMRLK---DSVP-CAVIE-GDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADAAPRLPLDD 184 (290)
T ss_pred CCCCCHHHHHHHHHHHhc---cCCC-EEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHHHHHHhhcC
Confidence 379999999999998853 2222 22222 11112222 22234443320 10001122333344444443444
Q ss_pred cEEEEEeCCCC
Q 046006 77 KFVLLLDDKWE 87 (180)
Q Consensus 77 ~~LlVlDdv~~ 87 (180)
.-+++++++-.
T Consensus 185 ~d~liIEnvGn 195 (290)
T PRK10463 185 NGILFIENVGN 195 (290)
T ss_pred CcEEEEECCCC
Confidence 56888999875
No 370
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.18 E-value=0.062 Score=42.92 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=16.1
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
++|+||||||..+++.+.
T Consensus 86 PPGsGKStla~~La~~l~ 103 (361)
T smart00763 86 PVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 589999999999998874
No 371
>PRK07667 uridine kinase; Provisional
Probab=93.17 E-value=0.059 Score=39.20 Aligned_cols=17 Identities=24% Similarity=0.560 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||+|..+...+
T Consensus 25 ~~gsGKStla~~L~~~l 41 (193)
T PRK07667 25 LSRSGKTTFVANLKENM 41 (193)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998875
No 372
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.16 E-value=0.058 Score=36.40 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.8
Q ss_pred CCcHHHHHHHHHccc
Q 046006 3 GVGKTTLLTHINNKF 17 (180)
Q Consensus 3 GiGKTtLA~~~~~~~ 17 (180)
|.||||+++.++..+
T Consensus 25 GaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 25 GAGKTTFVRGLARAL 39 (123)
T ss_dssp TSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc
Confidence 899999999998875
No 373
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.12 E-value=0.059 Score=39.46 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 11 ~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 11 IPGVGKTSISGYIARHR 27 (197)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 48999999999999884
No 374
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.10 E-value=0.15 Score=38.42 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=22.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQL 38 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 38 (180)
|||+||||-+..+++.+- -...=+++.=++.|....+
T Consensus 56 pPG~GKTTsi~~LAr~LL-G~~~ke~vLELNASdeRGI 92 (333)
T KOG0991|consen 56 PPGTGKTTSILCLARELL-GDSYKEAVLELNASDERGI 92 (333)
T ss_pred CCCCchhhHHHHHHHHHh-ChhhhhHhhhccCcccccc
Confidence 699999998777777641 1122245555555544433
No 375
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.09 E-value=0.21 Score=33.05 Aligned_cols=30 Identities=23% Similarity=0.082 Sum_probs=20.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV 31 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~ 31 (180)
..|+|||+.+..+..+.. .......+++++
T Consensus 8 ~~G~GKT~~~~~~~~~~~-~~~~~~~~lv~~ 37 (144)
T cd00046 8 PTGSGKTLAALLPILELL-DSLKGGQVLVLA 37 (144)
T ss_pred CCCCchhHHHHHHHHHHH-hcccCCCEEEEc
Confidence 379999999988877742 222345566664
No 376
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.05 E-value=0.065 Score=37.30 Aligned_cols=17 Identities=29% Similarity=0.647 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||||+.+...+
T Consensus 7 ~~GsGKSTla~~L~~~l 23 (149)
T cd02027 7 LSGSGKSTIARALEEKL 23 (149)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998875
No 377
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.04 E-value=0.54 Score=39.27 Aligned_cols=51 Identities=22% Similarity=0.255 Sum_probs=28.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLL 52 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 52 (180)
+.|+||||++..++..+. .+..-..+..+.... .....+-+....+.++.+
T Consensus 264 pnGvGKTTTiaKLA~~~~-~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVp 315 (484)
T PRK06995 264 PTGVGKTTTTAKLAARCV-MRHGASKVALLTTDSYRIGGHEQLRIYGKILGVP 315 (484)
T ss_pred CCCccHHHHHHHHHHHHH-HhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCC
Confidence 369999999999997742 112112344554332 223444455556666544
No 378
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.03 E-value=0.067 Score=38.60 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.++...
T Consensus 10 ~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 10 PSGSGKDSLLAALRQRE 26 (186)
T ss_pred CCCCCHHHHHHHHhccC
Confidence 57999999999998774
No 379
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.00 E-value=0.057 Score=38.23 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+.+.+
T Consensus 10 ~~GsGKst~~~~la~~l 26 (171)
T PRK03731 10 ARGCGKTTVGMALAQAL 26 (171)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999875
No 380
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=92.97 E-value=0.059 Score=41.17 Aligned_cols=17 Identities=35% Similarity=0.712 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 9 GGVGKTT~~~nLA~~La 25 (268)
T TIGR01281 9 GGIGKSTTSSNLSVAFA 25 (268)
T ss_pred CcCcHHHHHHHHHHHHH
Confidence 89999999888777653
No 381
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.95 E-value=0.058 Score=39.74 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
|=|+||||||+.+.+++
T Consensus 12 ~IG~GKSTLa~~La~~l 28 (216)
T COG1428 12 MIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccccCHHHHHHHHHHHh
Confidence 44999999999999986
No 382
>COG1158 Rho Transcription termination factor [Transcription]
Probab=92.93 E-value=0.41 Score=37.93 Aligned_cols=84 Identities=21% Similarity=0.258 Sum_probs=51.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEE-eCCCC-CHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHH----Hh-
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV-VSKDL-QLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFR----FL- 73 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~-~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~----~L- 73 (180)
+|-.|||+|.+.+++.. ..+|.++..||- +.+.+ .+.++.+.+-...-.+ .-+.++...-+.++.+.+ ..
T Consensus 181 PPkaGKT~lLq~IA~aI--t~N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaS-TFDepp~~HvqVAE~viEkAKRlVE 257 (422)
T COG1158 181 PPKAGKTTLLQNIANAI--TTNHPECELIVLLIDERPEEVTDMQRSVKGEVVAS-TFDEPPSRHVQVAEMVIEKAKRLVE 257 (422)
T ss_pred CCCCCchHHHHHHHHHH--hcCCCceEEEEEEecCCchHHHHHHHhhcceEEee-cCCCcchhhHHHHHHHHHHHHHHHH
Confidence 46789999999999985 568899999986 34433 5666766665333222 212222222233333333 33
Q ss_pred CCCcEEEEEeCCCC
Q 046006 74 SKKKFVLLLDDKWE 87 (180)
Q Consensus 74 ~~k~~LlVlDdv~~ 87 (180)
.++.+.+.||-+-.
T Consensus 258 ~~kDVVILLDSITR 271 (422)
T COG1158 258 HGKDVVILLDSITR 271 (422)
T ss_pred cCCcEEEEehhHHH
Confidence 36778888888643
No 383
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.93 E-value=0.064 Score=38.59 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||||..+...+
T Consensus 7 ~sgsGKttla~~l~~~l 23 (179)
T cd02028 7 PSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999999875
No 384
>PRK14529 adenylate kinase; Provisional
Probab=92.92 E-value=0.39 Score=35.89 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 8 ~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 8 PNGSGKGTQGALVKKKY 24 (223)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998875
No 385
>PRK06761 hypothetical protein; Provisional
Probab=92.92 E-value=0.1 Score=40.34 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=19.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWI 30 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv 30 (180)
++|+||||+++.+++.+. ...++...+.
T Consensus 11 ~~GsGKTTla~~L~~~L~--~~g~~v~~~~ 38 (282)
T PRK06761 11 LPGFGKSTTAKMLNDILS--QNGIEVELYL 38 (282)
T ss_pred CCCCCHHHHHHHHHHhcC--cCceEEEEEe
Confidence 489999999999999863 2344444433
No 386
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.87 E-value=0.26 Score=43.44 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||.||+.++..+
T Consensus 496 P~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 496 PTGVGKTEVTVQLSKAL 512 (758)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998875
No 387
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=92.87 E-value=0.21 Score=43.30 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||++|+.++...
T Consensus 193 ~~G~GKt~~~~~~a~~~ 209 (644)
T PRK10733 193 PPGTGKTLLAKAIAGEA 209 (644)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 48999999999998874
No 388
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.85 E-value=0.064 Score=38.29 Aligned_cols=13 Identities=46% Similarity=0.636 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHH
Q 046006 2 GGVGKTTLLTHIN 14 (180)
Q Consensus 2 gGiGKTtLA~~~~ 14 (180)
||+||||+|..+.
T Consensus 9 PGvGKTT~~~~L~ 21 (180)
T COG1936 9 PGVGKTTVCKLLR 21 (180)
T ss_pred CCCchHHHHHHHH
Confidence 8999999999997
No 389
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.85 E-value=0.066 Score=38.23 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 12 ~~GaGKStl~~~La~~l 28 (172)
T PRK05057 12 PMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCCcCHHHHHHHHHHHc
Confidence 57999999999999874
No 390
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.5 Score=38.76 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+|||++..++++.+
T Consensus 243 PPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 243 PPGTGKSSFIAAMANYL 259 (457)
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 69999999999999986
No 391
>PRK05748 replicative DNA helicase; Provisional
Probab=92.81 E-value=0.57 Score=38.71 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKV 49 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 49 (180)
||+|||++|..++.+.. .+.. ..++++ |-.-+..++...++...
T Consensus 212 pg~GKT~~al~ia~~~a-~~~g-~~v~~f--SlEms~~~l~~R~l~~~ 255 (448)
T PRK05748 212 PSVGKTAFALNIAQNVA-TKTD-KNVAIF--SLEMGAESLVMRMLCAE 255 (448)
T ss_pred CCCCchHHHHHHHHHHH-HhCC-CeEEEE--eCCCCHHHHHHHHHHHh
Confidence 79999999999987742 2222 244454 33446667777776544
No 392
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=92.81 E-value=0.058 Score=37.87 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=15.3
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
+|+||||+++.++..+.
T Consensus 1 ~GsGKStvg~~lA~~L~ 17 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG 17 (158)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHhC
Confidence 69999999999999863
No 393
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.79 E-value=0.077 Score=37.83 Aligned_cols=17 Identities=35% Similarity=0.477 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||||+.++...
T Consensus 9 ~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 9 PSGVGKSTLVKALLEED 25 (180)
T ss_pred CCCCCHHHHHHHHHccC
Confidence 47999999999999864
No 394
>PRK10037 cell division protein; Provisional
Probab=92.79 E-value=0.11 Score=39.36 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 11 GGvGKTT~a~nLA~~La 27 (250)
T PRK10037 11 GGVGTTSITAALAWSLQ 27 (250)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 89999999999988764
No 395
>PRK04182 cytidylate kinase; Provisional
Probab=92.79 E-value=0.071 Score=37.85 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 8 ~~GsGKstia~~la~~l 24 (180)
T PRK04182 8 PPGSGKTTVARLLAEKL 24 (180)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999999875
No 396
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=92.76 E-value=0.091 Score=40.43 Aligned_cols=17 Identities=35% Similarity=0.688 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++.-+.
T Consensus 10 GGVGKTT~a~nLA~~La 26 (279)
T PRK13230 10 GGIGKSTTVCNIAAALA 26 (279)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999999887764
No 397
>PRK14531 adenylate kinase; Provisional
Probab=92.75 E-value=0.065 Score=38.58 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+||||+|+.++..+
T Consensus 10 ~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 10 PPGAGKGTQAARLCAAH 26 (183)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998874
No 398
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.72 E-value=0.58 Score=36.03 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=19.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWI 30 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv 30 (180)
.+|+|||||.+.++... ....+.+++
T Consensus 119 ~~g~GKttl~~~l~~~~----~~~~G~i~~ 144 (270)
T TIGR02858 119 PPQCGKTTLLRDLARIL----STGISQLGL 144 (270)
T ss_pred CCCCCHHHHHHHHhCcc----CCCCceEEE
Confidence 37999999999999885 344455555
No 399
>PRK13948 shikimate kinase; Provisional
Probab=92.72 E-value=0.072 Score=38.52 Aligned_cols=17 Identities=18% Similarity=0.329 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
|.|+||||+++.+...+
T Consensus 18 ~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 18 FMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 68999999999999875
No 400
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.72 E-value=0.077 Score=33.16 Aligned_cols=17 Identities=47% Similarity=0.757 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
+|+||||++..++..+.
T Consensus 8 ~G~Gktt~~~~l~~~l~ 24 (99)
T cd01983 8 GGVGKTTLAANLAAALA 24 (99)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 69999999999998864
No 401
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=92.71 E-value=0.13 Score=44.31 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=34.4
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVG 50 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 50 (180)
.+|+||||+|+.+.+.+. ..+++..+|..- ...+...+++.++..++
T Consensus 58 ~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 58 SPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred CCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 379999999999998753 234577778654 44577777777776665
No 402
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.71 E-value=0.11 Score=38.09 Aligned_cols=47 Identities=32% Similarity=0.356 Sum_probs=28.5
Q ss_pred CCCCcHHHHHHHHHccccc----ccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLV----SSTDFDCVIWIVVSKDLQLEKIQEIVGK 47 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~----~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 47 (180)
+||+|||+++..+....-. ....-+..+-++..++.....++..+.+
T Consensus 25 pPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 25 PPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 5899999877776666310 1133455566666666666667666666
No 403
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.69 E-value=0.24 Score=35.73 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+||||+|+.+...+
T Consensus 11 ~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 11 IDGAGKTTQANLLKKLL 27 (195)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999999886
No 404
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=92.66 E-value=0.067 Score=41.03 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++.-+.
T Consensus 11 GGVGKTT~a~nLA~~La 27 (275)
T PRK13233 11 GGIGKSTTTQNTAAAMA 27 (275)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999998877753
No 405
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=92.66 E-value=0.075 Score=37.92 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
||+||||+|..++..+
T Consensus 9 gG~GKSt~a~nLA~~l 24 (179)
T cd03110 9 GGTGKTTVTAALAALL 24 (179)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8999999999987764
No 406
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=92.65 E-value=0.39 Score=36.96 Aligned_cols=72 Identities=7% Similarity=-0.073 Sum_probs=38.5
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC--CHHHHHHHHHHH----hCCCCCCCCCCcChHHHHHHHHHHhCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL--QLEKIQEIVGKK----VGLLDGDSWKNKNSEEKALEIFRFLSK 75 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~----l~~~~~~~~~~~~~~~~~~~l~~~L~~ 75 (180)
+|+||||+|+.+.+.+.. .+ .....++...-+ +-...-..+... ...+ .-.+...+.+.+.+.++...++
T Consensus 8 SGSGKTTv~~~l~~~l~~-~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfd-Hf~PeAnd~dlL~~~l~~L~~g 83 (277)
T cd02029 8 SGAGTTTVKRAFEHIFAR-EG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFS-HFGPEANLFDLLEELFRTYGET 83 (277)
T ss_pred CCCCHHHHHHHHHHHHHh-cC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCC-CCCcccccHHHHHHHHHHHHcC
Confidence 699999999999877531 11 123445433322 222222222222 1222 1124566777777777777765
Q ss_pred Cc
Q 046006 76 KK 77 (180)
Q Consensus 76 k~ 77 (180)
+.
T Consensus 84 ~~ 85 (277)
T cd02029 84 GR 85 (277)
T ss_pred CC
Confidence 53
No 407
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=92.65 E-value=0.072 Score=40.02 Aligned_cols=16 Identities=38% Similarity=0.706 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
||+||||+|..++..+
T Consensus 10 GGvGKTt~a~~LA~~l 25 (251)
T TIGR01969 10 GGTGKTTITANLGVAL 25 (251)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 8999999999888765
No 408
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.65 E-value=0.29 Score=43.80 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||+||+.++...
T Consensus 207 ~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 207 EPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999999875
No 409
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.63 E-value=0.067 Score=39.48 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.||+||||+|++++.-+
T Consensus 9 yPgsGKTtfakeLak~L 25 (261)
T COG4088 9 YPGSGKTTFAKELAKEL 25 (261)
T ss_pred CCCCCchHHHHHHHHHH
Confidence 48999999999998765
No 410
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.62 E-value=0.26 Score=42.35 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=29.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVG 50 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 50 (180)
++|+|||++|+.+.+.+. ...|...+++. ....+...+++.++..++
T Consensus 45 ~pG~GKT~la~~la~~l~--~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 45 EPGVGKSMLAKAMAELLP--DEELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred CCCCCHHHHHHHHHHHcC--chhheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 479999999999998863 22333333332 222345555777766665
No 411
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.55 E-value=0.1 Score=39.98 Aligned_cols=17 Identities=35% Similarity=0.638 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 9 GGVGKTT~a~nLA~~La 25 (275)
T TIGR01287 9 GGIGKSTTTQNIAAALA 25 (275)
T ss_pred CcCcHHHHHHHHHHHHH
Confidence 89999999999887764
No 412
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=92.54 E-value=0.064 Score=37.72 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||++.+...
T Consensus 8 ~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 8 PSTGKTTLIEALAAR 22 (163)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHc
Confidence 589999999999865
No 413
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=92.51 E-value=0.36 Score=39.17 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=18.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFD 25 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~ 25 (180)
+||.|||++|..+.+.++ ++.+
T Consensus 18 ~PGTGKTtfaLelL~~l~---~~~~ 39 (484)
T PF07088_consen 18 EPGTGKTTFALELLNSLK---DHGN 39 (484)
T ss_pred CCCCCceeeehhhHHHHh---ccCC
Confidence 689999999999999864 5554
No 414
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.49 E-value=0.091 Score=34.53 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
+|+|||||.+.++...
T Consensus 8 ~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 8 SGVGKTSLIRRLCGGE 23 (119)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999999874
No 415
>PRK15453 phosphoribulokinase; Provisional
Probab=92.47 E-value=0.72 Score=35.80 Aligned_cols=69 Identities=9% Similarity=-0.005 Sum_probs=36.8
Q ss_pred CCCcHHHHHHHHHcccccccCCCC-eEEEEEeCCCC--CHHHHHHHHH--HHh--CCCCCCCCCCcChHHHHHHHHHHhC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFD-CVIWIVVSKDL--QLEKIQEIVG--KKV--GLLDGDSWKNKNSEEKALEIFRFLS 74 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~-~~~wv~~~~~~--~~~~~~~~i~--~~l--~~~~~~~~~~~~~~~~~~~l~~~L~ 74 (180)
+|+||||+|+.+.+.+. +.. ....++...-+ +..++-..+. +.- +.+ .-.+...+.+.+.+.++...+
T Consensus 14 SGsGKTTva~~l~~if~----~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfd-hf~PdAnd~dlL~~~l~~l~~ 88 (290)
T PRK15453 14 SGAGTTTVKRAFEKIFR----RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFS-HFGPEANLFDELEQLFREYGE 88 (290)
T ss_pred CCCCHHHHHHHHHHHHh----hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCC-CCCCCcccHHHHHHHHHHHhc
Confidence 79999999999987652 111 24445543322 3333322221 111 122 112456677777777777655
Q ss_pred C
Q 046006 75 K 75 (180)
Q Consensus 75 ~ 75 (180)
+
T Consensus 89 ~ 89 (290)
T PRK15453 89 T 89 (290)
T ss_pred C
Confidence 3
No 416
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.46 E-value=0.66 Score=32.80 Aligned_cols=15 Identities=33% Similarity=0.384 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|.||||+|...+-+
T Consensus 11 ~G~Gkt~~a~g~~~r 25 (159)
T cd00561 11 NGKGKTTAALGLALR 25 (159)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999998877
No 417
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=92.45 E-value=0.081 Score=36.24 Aligned_cols=16 Identities=38% Similarity=0.478 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
.|+||||+++.++..+
T Consensus 31 lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 31 LGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 5999999999999886
No 418
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=92.45 E-value=2.2 Score=35.38 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=29.3
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~ 143 (180)
..++++++++++..+.+.+. .+..|++.++|.+- |+..+
T Consensus 173 ~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 173 QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 46889999999988877764 57789999999664 44333
No 419
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.42 E-value=0.71 Score=36.44 Aligned_cols=17 Identities=41% Similarity=0.780 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||++..++..+
T Consensus 122 pnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 47999999999998885
No 420
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.40 E-value=0.087 Score=38.43 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||||+.+...+
T Consensus 32 ~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 32 LSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 46999999999998874
No 421
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=92.39 E-value=0.33 Score=38.72 Aligned_cols=33 Identities=21% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
.+|+|||.||..++.++ ..........+++...
T Consensus 9 ~aGTGKTvla~~l~~~l-~~~~~~~~~~~l~~n~ 41 (352)
T PF09848_consen 9 GAGTGKTVLALNLAKEL-QNSEEGKKVLYLCGNH 41 (352)
T ss_pred cCCcCHHHHHHHHHHHh-hccccCCceEEEEecc
Confidence 38999999999999986 1124445566666554
No 422
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=92.38 E-value=0.078 Score=40.69 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++.-+.
T Consensus 10 GGVGKTT~~~nLA~~La 26 (274)
T PRK13235 10 GGIGKSTTTQNTVAGLA 26 (274)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 89999999999887763
No 423
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.37 E-value=2 Score=36.88 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=27.8
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCCh-HHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLP-LALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~P-Lal~~~ 143 (180)
..+++.+++.++....+... ....|++.++|.. .|+..+
T Consensus 171 ~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 171 QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 46778889888888777653 6778888888865 444444
No 424
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=92.34 E-value=0.66 Score=38.85 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=43.4
Q ss_pred CCCcHHHHHH-HHHcccccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH-----HHHHHH
Q 046006 2 GGVGKTTLLT-HINNKFLVSSTDFDC-VIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE-----KALEIF 70 (180)
Q Consensus 2 gGiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~-----~~~~l~ 70 (180)
.|+|||+||. .+.++ . .-+. ++++-+++.. ...++.+.+.+.=..... .........+ ....+.
T Consensus 152 ~gtGKT~lal~~I~~q-~----~~dv~~V~~~IGer~~ev~~~~~~l~~~gal~~tvvV~atsd~~~~r~~ap~~a~tiA 226 (507)
T PRK07165 152 RQTGKTHIALNTIINQ-K----NTNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPSTSPYEQYLAPYVAMAHA 226 (507)
T ss_pred CCCCccHHHHHHHHHh-c----CCCeEEEEEEccCChHHHHHHHHHhhhcCceeeeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 6999999964 46665 2 2244 4777888765 455555555543211100 0011111111 122334
Q ss_pred HHhC-CCcEEEEEeCCCCc
Q 046006 71 RFLS-KKKFVLLLDDKWER 88 (180)
Q Consensus 71 ~~L~-~k~~LlVlDdv~~~ 88 (180)
++++ .+.+|+|+||+-..
T Consensus 227 Eyfrd~~dVLlv~DdLTr~ 245 (507)
T PRK07165 227 ENISYNDDVLIVFDDLTKH 245 (507)
T ss_pred HHHHhcCceEEEEcChHHH
Confidence 4442 28999999998653
No 425
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.27 E-value=0.36 Score=34.58 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
.|.||||.|..++.+
T Consensus 14 ~GkGKtt~a~g~a~r 28 (173)
T TIGR00708 14 NGKGKTTAAFGMALR 28 (173)
T ss_pred CCCChHHHHHHHHHH
Confidence 599999999998877
No 426
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.25 E-value=0.2 Score=37.62 Aligned_cols=16 Identities=44% Similarity=0.771 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
||+||||+|..++..+
T Consensus 9 GG~GKTtiaalll~~l 24 (255)
T COG3640 9 GGVGKTTIAALLLKRL 24 (255)
T ss_pred CCccHHHHHHHHHHHH
Confidence 8999999999966664
No 427
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=92.25 E-value=0.18 Score=37.73 Aligned_cols=17 Identities=47% Similarity=0.761 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 11 GGvGKTt~a~nla~~la 27 (246)
T TIGR03371 11 GGVGKTTLTANLASALK 27 (246)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 89999999999988764
No 428
>PRK02496 adk adenylate kinase; Provisional
Probab=92.23 E-value=0.086 Score=37.86 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 9 ~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 9 PPGAGKGTQAVVLAEHL 25 (184)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999998764
No 429
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=92.22 E-value=0.15 Score=38.97 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 9 GGvGKTT~a~nLA~~la 25 (267)
T cd02032 9 GGIGKSTTSSNLSVALA 25 (267)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999998887763
No 430
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=92.17 E-value=0.089 Score=40.34 Aligned_cols=17 Identities=29% Similarity=0.612 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++.-+.
T Consensus 10 GGVGKTT~a~nLA~~La 26 (273)
T PRK13232 10 GGIGKSTTTQNLTAALS 26 (273)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999999887763
No 431
>PLN02200 adenylate kinase family protein
Probab=92.15 E-value=0.089 Score=39.60 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+||||+|+.++..+
T Consensus 51 ~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 51 GPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998774
No 432
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.09 E-value=0.11 Score=35.66 Aligned_cols=17 Identities=47% Similarity=0.772 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.+...+
T Consensus 7 psGsGKstl~~~L~~~~ 23 (137)
T cd00071 7 PSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 47999999999998874
No 433
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=92.06 E-value=0.11 Score=37.15 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
|.|+||||+.++++..+.
T Consensus 10 ~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 10 FMGAGKSTIGRALAKALN 27 (172)
T ss_pred CCCCCHhHHHHHHHHHcC
Confidence 679999999999998863
No 434
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.04 E-value=0.1 Score=37.68 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
++|+|||||++.++.+
T Consensus 12 PSG~GKsTl~k~L~~~ 27 (191)
T COG0194 12 PSGVGKSTLVKALLED 27 (191)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 5899999999999988
No 435
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.03 E-value=0.5 Score=38.50 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=29.5
Q ss_pred CcEEEEEeCCCCcccccc--------cc---------------ccccc-ccccceEeecCCChhhhHH
Q 046006 76 KKFVLLLDDKWERVDLNK--------GL---------------FVCGL-VEANKNFKVECLSDNDAWE 119 (180)
Q Consensus 76 k~~LlVlDdv~~~~~l~~--------g~---------------~~~~~-~~~~~~~~l~~L~~~~a~~ 119 (180)
++.+++||.|.....|.. |. ..+.. .+-...+++-||+..|-..
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 778999999999887665 11 11111 1223578899999988865
No 436
>PRK10646 ADP-binding protein; Provisional
Probab=92.03 E-value=0.095 Score=36.76 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=13.9
Q ss_pred CCcHHHHHHHHHccc
Q 046006 3 GVGKTTLLTHINNKF 17 (180)
Q Consensus 3 GiGKTtLA~~~~~~~ 17 (180)
|.||||+++.++..+
T Consensus 38 GaGKTtf~rgl~~~L 52 (153)
T PRK10646 38 GAGKTTFSRGFLQAL 52 (153)
T ss_pred CCCHHHHHHHHHHHc
Confidence 899999999998876
No 437
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=91.97 E-value=0.44 Score=42.22 Aligned_cols=22 Identities=5% Similarity=0.317 Sum_probs=17.4
Q ss_pred ceEeecCCChhhhHHHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQKLA 126 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~~~ 126 (180)
.++++.+++.++-.++..++..
T Consensus 486 ~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 486 EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred eeeecCCCCHHHHHHHHHHhhh
Confidence 4678899999999888877743
No 438
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.96 E-value=0.1 Score=38.03 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||||+.++..+
T Consensus 13 ~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 13 PSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 47999999999998874
No 439
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=91.96 E-value=0.19 Score=40.34 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
.||+|||+|.+++.+.+.
T Consensus 30 ~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 30 PAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CCCCChhHHHHHHHHHhc
Confidence 489999999999988863
No 440
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.92 E-value=0.11 Score=36.64 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+.+.+
T Consensus 8 ~~GSGKstia~~la~~l 24 (171)
T TIGR02173 8 PPGSGKTTVAKILAEKL 24 (171)
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998874
No 441
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=0.26 Score=38.42 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.||.|||-||++++|+-
T Consensus 227 ~PGTGKTLLAKAVANqT 243 (440)
T KOG0726|consen 227 EPGTGKTLLAKAVANQT 243 (440)
T ss_pred CCCCchhHHHHHHhccc
Confidence 38999999999999983
No 442
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=91.91 E-value=0.25 Score=35.43 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.8
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
+-|+||||+++.+++.+.
T Consensus 4 iDGsGKtT~~~~L~~~l~ 21 (186)
T PF02223_consen 4 IDGSGKTTQIRLLAEALK 21 (186)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 369999999999999874
No 443
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=91.88 E-value=0.11 Score=37.07 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=22.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD 35 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (180)
++|+|||.||+.++..+. + +.....+-++++.-
T Consensus 11 psGvGKT~la~~la~~l~-~-~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 11 PSGVGKTELAKALAELLF-V-GSERPLIRIDMSEY 43 (171)
T ss_dssp STTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGH
T ss_pred CCCCCHHHHHHHHHHHhc-c-CCccchHHHhhhcc
Confidence 479999999999988852 1 23345555665543
No 444
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.82 E-value=0.46 Score=42.56 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||++|..++.+.
T Consensus 202 ~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 202 EPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998875
No 445
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=91.81 E-value=1.8 Score=36.88 Aligned_cols=81 Identities=10% Similarity=0.173 Sum_probs=47.9
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCC-------CC-----CCCCcChHHH---
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLD-------GD-----SWKNKNSEEK--- 65 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~-------~~-----~~~~~~~~~~--- 65 (180)
.|+|||+|...+.+. ..-|.++++-+++.- .+.+++.++-+...... .. ...+.+....
T Consensus 235 ~G~GKT~l~~~lak~-----s~aDviVyvg~GERG~Em~evle~fp~l~dp~~g~~~~~m~rtvlVa~tsd~p~~~R~~s 309 (591)
T TIGR01042 235 FGCGKTVISQSLSKY-----SNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREESIMKRTTLVANTSNMPVAAREAS 309 (591)
T ss_pred CCcCHHHHHHHHHhc-----cCcCEEEEEEEeechHHHHHHHHHhHhhcccccccccccccceEEEEEcCCCCHHHHHHH
Confidence 599999999998775 456788888877654 45566666533221000 00 1112222211
Q ss_pred ---HHHHHHHh--CCCcEEEEEeCCCC
Q 046006 66 ---ALEIFRFL--SKKKFVLLLDDKWE 87 (180)
Q Consensus 66 ---~~~l~~~L--~~k~~LlVlDdv~~ 87 (180)
.-.+.+++ .++.+||++|+...
T Consensus 310 ~ytg~tiAEYfRD~G~~Vll~~DS~tR 336 (591)
T TIGR01042 310 IYTGITLAEYFRDMGYNVSMMADSTSR 336 (591)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 22344455 47899999999865
No 446
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=91.73 E-value=0.11 Score=39.29 Aligned_cols=17 Identities=47% Similarity=0.690 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||++..++.-+.
T Consensus 11 GGvG~TTltAnLA~aL~ 27 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALA 27 (243)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999987764
No 447
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.69 E-value=0.21 Score=36.73 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 37 ~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 37 HSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 36999999999998764
No 448
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=91.67 E-value=0.41 Score=36.24 Aligned_cols=16 Identities=31% Similarity=0.696 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
.|+|||+|++.+.+.+
T Consensus 61 rGtGKSSlVkall~~y 76 (249)
T PF05673_consen 61 RGTGKSSLVKALLNEY 76 (249)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999999886
No 449
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=91.66 E-value=0.17 Score=38.72 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=18.6
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIW 29 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~w 29 (180)
||+||||+|..++.-+. ..|..++.
T Consensus 11 GGtGKTTva~~la~~l~---~~~~~~l~ 35 (284)
T COG1149 11 GGTGKTTVAANLAVLLG---DKYKLVLA 35 (284)
T ss_pred CCCChhhHHHHHHHHhc---cccceEEE
Confidence 89999999999877654 55554444
No 450
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.66 E-value=0.11 Score=39.07 Aligned_cols=47 Identities=19% Similarity=0.185 Sum_probs=26.5
Q ss_pred HHHHHHHhCCCC---CCCCCCcChHHHH-HHHHHHhCCCcEEEEEeCCCCc
Q 046006 42 QEIVGKKVGLLD---GDSWKNKNSEEKA-LEIFRFLSKKKFVLLLDDKWER 88 (180)
Q Consensus 42 ~~~i~~~l~~~~---~~~~~~~~~~~~~-~~l~~~L~~k~~LlVlDdv~~~ 88 (180)
..+++++++.++ ..-+..-+..+++ -.+.+.|.-++-+||+|+.-+.
T Consensus 121 i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSa 171 (252)
T COG1124 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSA 171 (252)
T ss_pred HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhh
Confidence 345556666542 1111223333333 3466777888889999997554
No 451
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.65 E-value=0.23 Score=35.71 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=21.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV 31 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~ 31 (180)
.+|+|||||.+.+|.++ ..-.+.+||.
T Consensus 45 ~SG~GKStllr~LYaNY----~~d~G~I~v~ 71 (235)
T COG4778 45 PSGSGKSTLLRSLYANY----LPDEGQILVR 71 (235)
T ss_pred CCCCcHHHHHHHHHhcc----CCCCceEEEE
Confidence 47999999999999987 2335778775
No 452
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.60 E-value=0.13 Score=33.90 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=12.4
Q ss_pred CCCCcHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHIN 14 (180)
Q Consensus 1 mgGiGKTtLA~~~~ 14 (180)
.+|+|||||++.+.
T Consensus 23 pSGsGKSTLl~~l~ 36 (107)
T cd00820 23 DSGIGKTELALELI 36 (107)
T ss_pred CCCCCHHHHHHHhh
Confidence 47999999999976
No 453
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.60 E-value=0.11 Score=38.23 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||++..++..+.
T Consensus 9 GGvGKTt~~~nLA~~la 25 (212)
T cd02117 9 GGIGKSTTSQNLSAALA 25 (212)
T ss_pred CcCcHHHHHHHHHHHHH
Confidence 89999999888877763
No 454
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.55 E-value=0.23 Score=36.36 Aligned_cols=16 Identities=38% Similarity=0.463 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
.|+|||||++.++...
T Consensus 35 nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 35 NGAGKTTTIRMILGII 50 (210)
T ss_pred CCCCHHHHHHHHhCCC
Confidence 6999999999998764
No 455
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=91.53 E-value=0.22 Score=40.31 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 114 GGvGKTT~a~nLA~~La 130 (387)
T TIGR03453 114 GGSGKTTTAAHLAQYLA 130 (387)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 89999999999887763
No 456
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=91.48 E-value=0.35 Score=41.59 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=26.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGK 47 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 47 (180)
+|+||||+++.+...+......-...+.+...+.-....+.+.+..
T Consensus 176 pGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 176 PGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 7999999998887764211111124555555554444445444443
No 457
>PRK14528 adenylate kinase; Provisional
Probab=91.47 E-value=0.12 Score=37.42 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+||||+|+.++..+
T Consensus 9 ~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 9 PPGAGKGTQAKILCERL 25 (186)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999998774
No 458
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=91.43 E-value=0.34 Score=35.80 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
-|+||||.++.++..+.
T Consensus 12 DGaGKTT~~~~L~~~l~ 28 (208)
T COG0125 12 DGAGKTTQAELLKERLE 28 (208)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 49999999999999874
No 459
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=91.39 E-value=0.14 Score=36.81 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.++..+
T Consensus 11 ~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 11 VSGSGKSLIGSKIAALF 27 (176)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999999875
No 460
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.38 E-value=0.24 Score=36.51 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||++.++.-.
T Consensus 38 ~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 38 PSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 36999999999998764
No 461
>PRK09165 replicative DNA helicase; Provisional
Probab=91.38 E-value=0.68 Score=38.88 Aligned_cols=46 Identities=20% Similarity=0.175 Sum_probs=26.8
Q ss_pred CCCcHHHHHHHHHcccccccC------------CCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046006 2 GGVGKTTLLTHINNKFLVSST------------DFDCVIWIVVSKDLQLEKIQEIVGKKV 49 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~------------~f~~~~wv~~~~~~~~~~~~~~i~~~l 49 (180)
||+|||++|..++.+...... +-..++++ |-.-+..++...++...
T Consensus 226 pg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~f--SlEMs~~ql~~R~la~~ 283 (497)
T PRK09165 226 PSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFF--SLEMSAEQLATRILSEQ 283 (497)
T ss_pred CCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEE--eCcCCHHHHHHHHHHHh
Confidence 799999999888766421100 01223333 44556677777665543
No 462
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=91.38 E-value=0.12 Score=39.01 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 11 GGvGKTt~a~~lA~~la 27 (261)
T TIGR01968 11 GGVGKTTTTANLGTALA 27 (261)
T ss_pred CCccHHHHHHHHHHHHH
Confidence 89999999999887753
No 463
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=91.33 E-value=0.16 Score=39.43 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 9 GGVGKTTta~nLA~~La 25 (290)
T CHL00072 9 GGIGKSTTSCNISIALA 25 (290)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999999888764
No 464
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=91.32 E-value=0.28 Score=38.73 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=23.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKI 41 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 41 (180)
.+|+|||+||++++..+. -..+.+.........++
T Consensus 51 ~PG~gKT~la~~lA~~l~------~~~~~i~~t~~l~p~d~ 85 (329)
T COG0714 51 PPGVGKTLLARALARALG------LPFVRIQCTPDLLPSDL 85 (329)
T ss_pred CCCccHHHHHHHHHHHhC------CCeEEEecCCCCCHHHh
Confidence 489999999999998852 22344555555555554
No 465
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=91.32 E-value=0.14 Score=34.64 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
.+|+|||||++.+++.
T Consensus 4 ~~gsGKstl~~~l~~~ 19 (163)
T cd00880 4 RTNAGKSSLLNALLGQ 19 (163)
T ss_pred CCCCCHHHHHHHHhCc
Confidence 4799999999999876
No 466
>PRK13973 thymidylate kinase; Provisional
Probab=91.31 E-value=0.46 Score=35.10 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+.|+||||+++.++..+
T Consensus 11 ~dGsGKtTq~~~l~~~l 27 (213)
T PRK13973 11 GEGAGKSTQIRLLAERL 27 (213)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 36999999999999986
No 467
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.29 E-value=0.46 Score=36.11 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=28.8
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHh
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKV 49 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 49 (180)
+|+|||++|.+++.+.. . .+-..++|++.. .+..++...++...
T Consensus 28 pg~GKT~~~l~ia~~~a-~-~~~~~vly~SlE--m~~~~l~~R~la~~ 71 (259)
T PF03796_consen 28 PGVGKTAFALQIALNAA-L-NGGYPVLYFSLE--MSEEELAARLLARL 71 (259)
T ss_dssp TTSSHHHHHHHHHHHHH-H-TTSSEEEEEESS--S-HHHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHH-H-hcCCeEEEEcCC--CCHHHHHHHHHHHh
Confidence 79999999999999853 2 222456666543 45556666665554
No 468
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=91.28 E-value=1.3 Score=30.22 Aligned_cols=17 Identities=35% Similarity=0.624 Sum_probs=14.6
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+|||+++..+...+.
T Consensus 9 gg~gkt~~~~~~a~~~~ 25 (139)
T cd02038 9 GGVGKTNISANLALALA 25 (139)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999999887753
No 469
>PRK06851 hypothetical protein; Provisional
Probab=91.27 E-value=0.18 Score=40.54 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=27.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEK 40 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 40 (180)
.+|+|||||+++++... ..+.++..++-|-+.+.++..
T Consensus 222 ~pG~GKstl~~~i~~~a--~~~G~~v~~~hC~~dPdslD~ 259 (367)
T PRK06851 222 RPGTGKSTMLKKIAKAA--EERGFDVEVYHCGFDPDSLDM 259 (367)
T ss_pred CCCCcHHHHHHHHHHHH--HhCCCeEEEEeCCCCCCCcce
Confidence 48999999999999984 346677777766665544443
No 470
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=91.26 E-value=1.1 Score=34.91 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
+|+||||+|+.+..-+
T Consensus 71 ~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 71 VAVGKSTTARILQALL 86 (290)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999998876553
No 471
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=91.23 E-value=0.15 Score=33.34 Aligned_cols=17 Identities=41% Similarity=0.649 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..+...+.
T Consensus 9 gg~gkt~~~~~la~~~~ 25 (106)
T cd03111 9 GGVGATTLAANLAVALA 25 (106)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999988877653
No 472
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=91.18 E-value=0.14 Score=38.25 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||++.+...+
T Consensus 41 ~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 41 PPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998875
No 473
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.17 E-value=0.27 Score=36.33 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
.|+|||||.+.++...
T Consensus 35 nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 35 NGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCCHHHHHHHHhCCC
Confidence 6999999999998764
No 474
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=91.16 E-value=0.14 Score=37.46 Aligned_cols=17 Identities=53% Similarity=0.688 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||+..+.++.
T Consensus 13 ~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 13 DGGVGKTTLLNRLVGDE 29 (219)
T ss_pred CCCccHHHHHHHHhcCc
Confidence 48999999999999874
No 475
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.15 E-value=0.47 Score=35.17 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEI 44 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 44 (180)
+|+|||++|.+++... .++ =..++|++... +..++.+.
T Consensus 25 ~G~GKt~~~~~~~~~~--~~~-g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 25 YGTGKTTFSLQFLYQG--LKN-GEKAMYISLEE--REERILGY 62 (224)
T ss_pred CCCCHHHHHHHHHHHH--HhC-CCeEEEEECCC--CHHHHHHH
Confidence 7999999999998763 222 34577777665 34444433
No 476
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=91.13 E-value=0.24 Score=37.66 Aligned_cols=17 Identities=41% Similarity=0.634 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 9 gG~GKtt~a~~la~~~a 25 (254)
T cd00550 9 GGVGKTTISAATAVRLA 25 (254)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 89999999999887753
No 477
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=91.11 E-value=0.48 Score=39.13 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=45.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC--------CCCCC-----CcChHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD--------GDSWK-----NKNSEEKAL 67 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------~~~~~-----~~~~~~~~~ 67 (180)
+.|.|||.+|..++.... .. ++++ +....-..+-.+.+...+.... ..... ..+.+.+..
T Consensus 63 pTGaGKT~va~~~~~~~~---~~---~Lvl-v~~~~L~~Qw~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~vat~qtl~~ 135 (442)
T COG1061 63 PTGAGKTVVAAEAIAELK---RS---TLVL-VPTKELLDQWAEALKKFLLLNDEIGIYGGGEKELEPAKVTVATVQTLAR 135 (442)
T ss_pred CCCCCHHHHHHHHHHHhc---CC---EEEE-ECcHHHHHHHHHHHHHhcCCccccceecCceeccCCCcEEEEEhHHHhh
Confidence 479999999999999853 22 4444 3333333333344444443320 00011 112333333
Q ss_pred --HHHHHhCCCcEEEEEeCCCCcc
Q 046006 68 --EIFRFLSKKKFVLLLDDKWERV 89 (180)
Q Consensus 68 --~l~~~L~~k~~LlVlDdv~~~~ 89 (180)
.+.+...++..|||+|.|.+..
T Consensus 136 ~~~l~~~~~~~~~liI~DE~Hh~~ 159 (442)
T COG1061 136 RQLLDEFLGNEFGLIIFDEVHHLP 159 (442)
T ss_pred hhhhhhhcccccCEEEEEccccCC
Confidence 2455556688999999998763
No 478
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=91.03 E-value=0.25 Score=40.31 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|.+++..+.
T Consensus 131 GGvGKTTta~nLA~~LA 147 (405)
T PRK13869 131 GGSGKTTTSAHLAQYLA 147 (405)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999888763
No 479
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.01 E-value=0.16 Score=36.80 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.+....
T Consensus 12 psG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 12 VAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 48999999999998874
No 480
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.95 E-value=0.28 Score=36.00 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||++.++.-.
T Consensus 33 ~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 33 PNGAGKTTLMRILATLT 49 (211)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 36999999999998764
No 481
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=90.95 E-value=0.28 Score=36.06 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
.|+|||||++.++...
T Consensus 37 nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 37 SGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCCHHHHHHHHhCCC
Confidence 6999999999998764
No 482
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=90.91 E-value=0.15 Score=35.35 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
.|+|||||++.+-...
T Consensus 10 ~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 10 SGSGKTTLAQALNGEE 25 (143)
T ss_pred CCCCHHHHHHHHcCCC
Confidence 5999999999998773
No 483
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=90.90 E-value=7.1 Score=31.23 Aligned_cols=36 Identities=22% Similarity=0.275 Sum_probs=29.0
Q ss_pred ceEeecCCChhhhHHHHHHH---HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK---LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~---~~~~i~~~c~g~PLal 140 (180)
..+.+.+++.++..+.+.+. ....++..++|.|+..
T Consensus 184 q~i~~~~~~~~~~~~~L~~~~~~~~~~~l~~~~Gsp~~A 222 (342)
T PRK06964 184 RQFPMTVPAPEAAAAWLAAQGVADADALLAEAGGAPLAA 222 (342)
T ss_pred EEEEecCCCHHHHHHHHHHcCCChHHHHHHHcCCCHHHH
Confidence 57889999999999999876 3445688899999743
No 484
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=90.83 E-value=0.3 Score=35.82 Aligned_cols=16 Identities=44% Similarity=0.441 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
.|+|||||.+.++...
T Consensus 35 nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 35 SGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCCCHHHHHHHHhCCC
Confidence 6999999999998764
No 485
>CHL00175 minD septum-site determining protein; Validated
Probab=90.80 E-value=0.15 Score=39.29 Aligned_cols=17 Identities=41% Similarity=0.618 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++.-+.
T Consensus 25 GGvGKTt~a~nLA~~La 41 (281)
T CHL00175 25 GGVGKTTTTANLGMSIA 41 (281)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999999887753
No 486
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=90.80 E-value=0.3 Score=35.19 Aligned_cols=16 Identities=50% Similarity=0.843 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
.|+|||||.+.+....
T Consensus 27 nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 27 NGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCCHHHHHHHHhCCC
Confidence 6999999999998764
No 487
>PRK13768 GTPase; Provisional
Probab=90.75 E-value=0.26 Score=37.51 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.||+||||++..+...+
T Consensus 10 ~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 10 TAGSGKTTLTKALSDWL 26 (253)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 48999999998888765
No 488
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=90.75 E-value=0.25 Score=35.43 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=20.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV 31 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~ 31 (180)
++|+|||||+..++..++ ..|...+.-+
T Consensus 10 psg~GK~~l~~~L~~~~~---~~~~~~v~~T 37 (183)
T PF00625_consen 10 PSGSGKSTLAKRLIQEFP---DKFGRVVSHT 37 (183)
T ss_dssp STTSSHHHHHHHHHHHST---TTEEEEEEEE
T ss_pred CCCCCHHHHHHHHHHhcc---cccccceeec
Confidence 479999999999998854 5664444433
No 489
>PRK10818 cell division inhibitor MinD; Provisional
Probab=90.73 E-value=0.15 Score=38.92 Aligned_cols=17 Identities=47% Similarity=0.606 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 12 GGvGKTt~a~nlA~~la 28 (270)
T PRK10818 12 GGVGKTTSSAAIATGLA 28 (270)
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999999988763
No 490
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.72 E-value=0.33 Score=34.70 Aligned_cols=25 Identities=36% Similarity=0.320 Sum_probs=18.9
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWI 30 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv 30 (180)
.|.|||||++.++... ....+.+.+
T Consensus 35 nGsGKSTLl~~l~G~~----~~~~G~i~~ 59 (178)
T cd03229 35 SGSGKSTLLRCIAGLE----EPDSGSILI 59 (178)
T ss_pred CCCCHHHHHHHHhCCC----CCCceEEEE
Confidence 6999999999998764 334566555
No 491
>PRK08356 hypothetical protein; Provisional
Probab=90.72 E-value=0.16 Score=36.89 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=12.5
Q ss_pred CCCCcHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHIN 14 (180)
Q Consensus 1 mgGiGKTtLA~~~~ 14 (180)
++|+||||+|+.+.
T Consensus 13 ~~gsGK~t~a~~l~ 26 (195)
T PRK08356 13 KIAAGKTTVAKFFE 26 (195)
T ss_pred CCCCCHHHHHHHHH
Confidence 58999999999994
No 492
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=90.69 E-value=0.27 Score=33.90 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
.|+|||||++.+.+.+ .+..+...+..+...
T Consensus 9 ~~sGKTTl~~~Li~~l--~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 9 KNSGKTTLIRKLINEL--KRRGYRVAVIKHTDH 39 (140)
T ss_dssp TTSSHHHHHHHHHHHH--HHTT--EEEEEE-ST
T ss_pred CCCCHHHHHHHHHHHH--hHcCCceEEEEEccC
Confidence 5899999999999996 335566555665443
No 493
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.66 E-value=0.44 Score=39.83 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=21.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
.+|+|||+||.+++..- ..+.=...+||+..+
T Consensus 29 ~pGsGKT~la~qfl~~g--~~~~ge~~lyvs~eE 60 (484)
T TIGR02655 29 TSGTGKTLFSIQFLYNG--IIHFDEPGVFVTFEE 60 (484)
T ss_pred CCCCCHHHHHHHHHHHH--HHhCCCCEEEEEEec
Confidence 48999999999987652 112224677877653
No 494
>PRK13695 putative NTPase; Provisional
Probab=90.61 E-value=0.16 Score=36.17 Aligned_cols=17 Identities=47% Similarity=0.597 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||++.+++.+
T Consensus 8 ~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 8 PPGVGKTTLVLKIAELL 24 (174)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999988775
No 495
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=90.57 E-value=0.18 Score=36.46 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
+.|+||||+++.+...
T Consensus 7 ~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 7 NIGAGKSTLAKELAEH 22 (193)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4699999999999876
No 496
>PRK05439 pantothenate kinase; Provisional
Probab=90.56 E-value=1.3 Score=34.85 Aligned_cols=72 Identities=13% Similarity=-0.064 Sum_probs=34.6
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCc
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKK 77 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~ 77 (180)
+|+||||+|+.+...+... ..-..+.-+++..-+...+.+.. +.+... ...+..-+.+.+...|.....++.
T Consensus 95 ~gsGKSTla~~L~~~l~~~-~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~-kg~Pes~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 95 VAVGKSTTARLLQALLSRW-PEHPKVELVTTDGFLYPNAVLEE--RGLMKR-KGFPESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred CCCCHHHHHHHHHHHHHhh-CCCCceEEEeccccccCHHHHhh--hhcccc-CCCcccccHHHHHHHHHHHHcCCC
Confidence 7999999999998764211 11122334444443322222211 111000 111233456666666666666654
No 497
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=90.56 E-value=0.19 Score=34.71 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
.+|+|||||...+.+.
T Consensus 8 ~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 8 AGGVGKSALTLQFMYD 23 (164)
T ss_pred CCCCCHHHHHHHHHhC
Confidence 3799999999999875
No 498
>PRK06851 hypothetical protein; Provisional
Probab=90.53 E-value=0.23 Score=39.88 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=25.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLE 39 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 39 (180)
.||+|||||.+.+++.+. ...|+...+.|.+.+.++.
T Consensus 38 ~pGtGKStl~~~i~~~~~--~~g~~Ve~~~~~~d~~slD 74 (367)
T PRK06851 38 GPGTGKSTLMKKIGEEFL--EKGYDVEFLHCSSDNDSLD 74 (367)
T ss_pred CCCCCHHHHHHHHHHHHH--HcCCeEEEEEcCCCCCcee
Confidence 379999999999999863 2356666666655544433
No 499
>COG0645 Predicted kinase [General function prediction only]
Probab=90.49 E-value=0.18 Score=35.89 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||+|+.+...+
T Consensus 9 l~GsGKstlA~~l~~~l 25 (170)
T COG0645 9 LPGSGKSTLARGLAELL 25 (170)
T ss_pred CCCccHhHHHHHHHhhc
Confidence 47999999999999886
No 500
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=90.47 E-value=0.19 Score=34.94 Aligned_cols=15 Identities=40% Similarity=0.671 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 9 ~~~GKTsli~~~~~~ 23 (164)
T smart00173 9 GGVGKSALTIQFVQG 23 (164)
T ss_pred CCCCHHHHHHHHHhC
Confidence 799999999999765
Done!