Query 046006
Match_columns 180
No_of_seqs 228 out of 1200
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 13:23:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 9.6E-33 3.3E-37 228.7 16.5 173 1-180 160-418 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 4.8E-27 1.6E-31 208.5 15.3 176 1-178 155-408 (1249)
3 1vt4_I APAF-1 related killer D 99.9 1.6E-27 5.4E-32 205.4 7.3 177 1-178 158-400 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 2.5E-23 8.7E-28 173.3 13.0 172 1-177 155-407 (591)
5 2qen_A Walker-type ATPase; unk 99.1 5.2E-10 1.8E-14 86.7 10.1 139 1-147 39-249 (350)
6 1w5s_A Origin recognition comp 99.0 3E-09 1E-13 84.4 12.2 142 1-144 60-266 (412)
7 2fna_A Conserved hypothetical 99.0 7.4E-09 2.5E-13 80.3 12.5 141 1-148 38-254 (357)
8 2qby_B CDC6 homolog 3, cell di 98.8 2.7E-08 9.4E-13 78.2 9.7 137 1-138 53-239 (384)
9 2v1u_A Cell division control p 98.8 7.5E-08 2.6E-12 75.5 11.9 135 1-138 52-243 (387)
10 2qby_A CDC6 homolog 1, cell di 98.7 6.7E-08 2.3E-12 75.6 9.8 138 1-140 53-241 (386)
11 1fnn_A CDC6P, cell division co 98.6 1.1E-06 3.6E-11 69.1 13.9 136 1-141 52-244 (389)
12 1njg_A DNA polymerase III subu 98.5 5.9E-07 2E-11 65.4 10.0 43 105-147 178-231 (250)
13 2chg_A Replication factor C sm 98.4 4.9E-06 1.7E-10 59.7 11.2 127 1-147 46-207 (226)
14 3te6_A Regulatory protein SIR3 98.1 1.1E-05 3.9E-10 62.1 8.9 120 1-124 53-210 (318)
15 1sxj_B Activator 1 37 kDa subu 98.1 2.3E-05 8E-10 59.7 9.3 41 105-145 159-211 (323)
16 1sxj_A Activator 1 95 kDa subu 97.8 0.00025 8.6E-09 58.1 11.4 132 1-144 85-253 (516)
17 2z4s_A Chromosomal replication 97.7 0.00019 6.4E-09 57.8 9.5 121 1-140 138-302 (440)
18 1hqc_A RUVB; extended AAA-ATPa 97.7 0.00074 2.5E-08 51.5 12.1 44 105-148 161-215 (324)
19 4b4t_J 26S protease regulatory 97.6 0.00044 1.5E-08 54.9 9.6 34 104-137 311-354 (405)
20 1jr3_A DNA polymerase III subu 97.6 0.00059 2E-08 53.0 10.3 40 105-144 171-221 (373)
21 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.0044 1.5E-07 47.6 13.9 39 105-143 172-222 (322)
22 1iqp_A RFCS; clamp loader, ext 97.5 0.00022 7.5E-09 54.4 6.4 43 105-147 162-215 (327)
23 3pvs_A Replication-associated 97.4 0.003 1E-07 50.8 12.9 37 105-141 158-212 (447)
24 2w58_A DNAI, primosome compone 97.4 0.00022 7.6E-09 50.8 5.2 66 1-88 62-127 (202)
25 4b4t_L 26S protease subunit RP 97.4 0.00086 3E-08 53.8 9.0 33 105-137 345-387 (437)
26 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.0045 1.5E-07 45.6 12.5 40 105-144 170-222 (262)
27 3h4m_A Proteasome-activating n 97.4 0.0016 5.5E-08 48.8 10.0 39 105-143 181-230 (285)
28 4b4t_H 26S protease regulatory 97.4 0.0009 3.1E-08 54.0 8.9 34 104-137 372-415 (467)
29 4b4t_M 26S protease regulatory 97.3 0.00064 2.2E-08 54.5 7.1 32 105-136 345-386 (434)
30 1l8q_A Chromosomal replication 97.3 0.0015 5E-08 50.1 9.0 32 105-138 160-202 (324)
31 1jbk_A CLPB protein; beta barr 97.3 0.00018 6E-09 50.2 3.5 17 1-17 51-67 (195)
32 4b4t_I 26S protease regulatory 97.3 0.0014 4.6E-08 52.5 8.8 32 105-136 346-387 (437)
33 3uk6_A RUVB-like 2; hexameric 97.3 0.001 3.5E-08 51.7 7.9 37 105-141 252-300 (368)
34 2cvh_A DNA repair and recombin 97.2 0.0012 4.2E-08 47.3 7.6 81 1-88 28-117 (220)
35 1a5t_A Delta prime, HOLB; zinc 97.1 0.0038 1.3E-07 48.2 9.9 36 105-140 160-201 (334)
36 3bos_A Putative DNA replicatio 97.1 0.00054 1.9E-08 49.7 4.9 40 105-144 167-217 (242)
37 2chq_A Replication factor C sm 97.1 0.0014 4.9E-08 49.6 7.3 40 105-144 154-204 (319)
38 2qp9_X Vacuolar protein sortin 97.1 0.0053 1.8E-07 47.8 10.6 39 105-143 210-260 (355)
39 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00019 6.5E-09 55.3 2.2 62 1-88 131-194 (331)
40 3ec2_A DNA replication protein 97.1 0.00044 1.5E-08 48.4 3.7 66 1-87 46-111 (180)
41 2zan_A Vacuolar protein sortin 96.9 0.0099 3.4E-07 47.7 11.1 37 105-141 294-342 (444)
42 3cf2_A TER ATPase, transitiona 96.9 0.0039 1.3E-07 53.7 9.1 33 105-137 365-407 (806)
43 3d8b_A Fidgetin-like protein 1 96.9 0.0092 3.2E-07 46.4 10.5 41 105-145 244-296 (357)
44 3hr8_A Protein RECA; alpha and 96.9 0.0028 9.6E-08 49.5 7.4 80 1-88 69-151 (356)
45 1n0w_A DNA repair protein RAD5 96.9 0.0028 9.5E-08 46.1 7.0 86 1-88 32-131 (243)
46 3eie_A Vacuolar protein sortin 96.9 0.0055 1.9E-07 46.9 8.8 40 105-144 177-228 (322)
47 2z43_A DNA repair and recombin 96.9 0.0029 9.9E-08 48.7 7.1 87 1-88 115-215 (324)
48 2p65_A Hypothetical protein PF 96.8 0.0015 5.2E-08 45.2 4.9 17 1-17 51-67 (187)
49 3io5_A Recombination and repai 96.8 0.0058 2E-07 47.0 8.3 81 1-88 36-123 (333)
50 1v5w_A DMC1, meiotic recombina 96.8 0.0071 2.4E-07 46.9 9.0 86 1-88 130-231 (343)
51 3t15_A Ribulose bisphosphate c 96.7 0.00076 2.6E-08 51.2 3.0 17 1-17 44-60 (293)
52 3vfd_A Spastin; ATPase, microt 96.7 0.029 9.8E-07 44.1 12.1 41 105-145 275-327 (389)
53 1xp8_A RECA protein, recombina 96.6 0.0075 2.6E-07 47.3 8.0 80 1-88 82-164 (366)
54 2zr9_A Protein RECA, recombina 96.6 0.0076 2.6E-07 46.9 7.9 80 1-88 69-151 (349)
55 2i1q_A DNA repair and recombin 96.6 0.0043 1.5E-07 47.5 6.3 87 1-88 106-216 (322)
56 1sxj_D Activator 1 41 kDa subu 96.5 0.006 2.1E-07 46.9 6.9 38 105-142 185-233 (353)
57 2b8t_A Thymidine kinase; deoxy 96.5 0.00048 1.6E-08 50.4 0.5 80 2-88 21-101 (223)
58 3b9p_A CG5977-PA, isoform A; A 96.5 0.0065 2.2E-07 45.7 6.8 40 105-144 182-233 (297)
59 3pfi_A Holliday junction ATP-d 96.5 0.023 7.8E-07 43.5 10.1 39 105-143 177-226 (338)
60 1lv7_A FTSH; alpha/beta domain 96.5 0.0044 1.5E-07 45.7 5.8 37 105-141 175-222 (257)
61 3cf0_A Transitional endoplasmi 96.5 0.0062 2.1E-07 46.2 6.6 34 105-138 179-222 (301)
62 3hu3_A Transitional endoplasmi 96.5 0.018 6.3E-07 46.8 9.6 39 105-143 365-414 (489)
63 1u94_A RECA protein, recombina 96.5 0.0085 2.9E-07 46.8 7.2 79 1-88 71-153 (356)
64 4b4t_K 26S protease regulatory 96.4 0.0028 9.6E-08 50.7 4.4 17 1-17 214-230 (428)
65 3syl_A Protein CBBX; photosynt 96.3 0.0045 1.6E-07 46.8 4.8 20 105-124 197-216 (309)
66 1d2n_A N-ethylmaleimide-sensit 96.3 0.0029 1E-07 47.2 3.6 31 105-135 191-228 (272)
67 1sxj_C Activator 1 40 kDa subu 96.2 0.024 8.1E-07 43.6 8.3 36 105-140 162-208 (340)
68 2x8a_A Nuclear valosin-contain 96.1 0.016 5.5E-07 43.5 6.7 17 1-17 52-68 (274)
69 3bh0_A DNAB-like replicative h 96.0 0.021 7.1E-07 43.7 7.2 43 1-48 76-118 (315)
70 2kjq_A DNAA-related protein; s 95.9 0.0049 1.7E-07 41.9 3.0 17 1-17 44-60 (149)
71 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.02 7E-07 41.0 6.5 82 1-88 31-135 (235)
72 1fx0_B ATP synthase beta chain 95.9 0.02 6.8E-07 46.5 6.9 84 2-87 174-277 (498)
73 3u61_B DNA polymerase accessor 95.8 0.014 4.9E-07 44.4 5.4 17 1-17 56-72 (324)
74 2ce7_A Cell division protein F 95.8 0.014 4.9E-07 47.3 5.5 33 105-137 179-221 (476)
75 3lda_A DNA repair protein RAD5 95.7 0.042 1.4E-06 43.6 7.9 87 1-88 186-285 (400)
76 4fcw_A Chaperone protein CLPB; 95.7 0.011 3.8E-07 44.6 4.5 17 1-17 55-71 (311)
77 2ck3_D ATP synthase subunit be 95.7 0.071 2.4E-06 43.1 9.1 84 2-87 162-264 (482)
78 3co5_A Putative two-component 95.6 0.0088 3E-07 40.2 3.2 15 2-16 36-50 (143)
79 1qhx_A CPT, protein (chloramph 95.6 0.0045 1.6E-07 42.8 1.8 17 1-17 11-27 (178)
80 4a1f_A DNAB helicase, replicat 95.5 0.033 1.1E-06 43.2 6.5 42 1-47 54-95 (338)
81 2gno_A DNA polymerase III, gam 95.5 0.05 1.7E-06 41.4 7.5 33 106-138 133-167 (305)
82 2px0_A Flagellar biosynthesis 95.5 0.056 1.9E-06 41.0 7.6 77 1-84 113-190 (296)
83 3cmu_A Protein RECA, recombina 95.4 0.04 1.4E-06 51.9 7.7 78 1-86 1435-1515(2050)
84 1sxj_E Activator 1 40 kDa subu 95.4 0.098 3.4E-06 40.1 9.0 40 105-144 186-237 (354)
85 1pzn_A RAD51, DNA repair and r 95.3 0.059 2E-06 41.8 7.5 87 1-88 139-243 (349)
86 1sky_E F1-ATPase, F1-ATP synth 95.3 0.055 1.9E-06 43.8 7.4 84 2-87 160-256 (473)
87 3ice_A Transcription terminati 95.3 0.01 3.6E-07 46.9 3.1 83 1-88 182-273 (422)
88 2dr3_A UPF0273 protein PH0284; 95.2 0.041 1.4E-06 39.8 5.9 82 1-88 31-140 (247)
89 2ffh_A Protein (FFH); SRP54, s 95.2 0.055 1.9E-06 43.2 7.0 18 1-18 106-123 (425)
90 2dhr_A FTSH; AAA+ protein, hex 95.1 0.036 1.2E-06 45.2 5.9 33 105-137 194-236 (499)
91 4a74_A DNA repair and recombin 95.1 0.22 7.7E-06 35.4 9.7 49 1-50 33-84 (231)
92 3kb2_A SPBC2 prophage-derived 95.1 0.0078 2.7E-07 41.2 1.7 17 1-17 9-25 (173)
93 1q57_A DNA primase/helicase; d 95.1 0.14 4.7E-06 41.7 9.3 43 1-47 250-292 (503)
94 1ly1_A Polynucleotide kinase; 95.1 0.0091 3.1E-07 41.2 2.0 15 1-15 10-24 (181)
95 2xxa_A Signal recognition part 95.0 0.11 3.7E-06 41.6 8.4 18 1-18 108-125 (433)
96 1vma_A Cell division protein F 95.0 0.063 2.2E-06 41.0 6.6 84 1-87 112-197 (306)
97 3kl4_A SRP54, signal recogniti 95.0 0.077 2.6E-06 42.5 7.4 17 1-17 105-121 (433)
98 3m6a_A ATP-dependent protease 95.0 0.024 8.3E-07 46.7 4.5 17 1-17 116-132 (543)
99 3lw7_A Adenylate kinase relate 95.0 0.01 3.4E-07 40.6 1.9 15 1-16 9-23 (179)
100 1j8m_F SRP54, signal recogniti 94.8 0.075 2.6E-06 40.3 6.5 85 1-88 106-192 (297)
101 2q6t_A DNAB replication FORK h 94.7 0.15 5.3E-06 40.7 8.5 44 1-48 208-251 (444)
102 1nks_A Adenylate kinase; therm 94.7 0.013 4.5E-07 40.8 2.0 17 1-17 9-25 (194)
103 3trf_A Shikimate kinase, SK; a 94.7 0.013 4.5E-07 40.8 2.0 17 1-17 13-29 (185)
104 3vaa_A Shikimate kinase, SK; s 94.7 0.014 4.6E-07 41.4 2.0 17 1-17 33-49 (199)
105 1zp6_A Hypothetical protein AT 94.7 0.015 5.1E-07 40.6 2.2 17 1-17 17-33 (191)
106 1kht_A Adenylate kinase; phosp 94.6 0.015 5E-07 40.5 2.0 17 1-17 11-27 (192)
107 1ls1_A Signal recognition part 94.6 0.081 2.8E-06 40.1 6.3 82 1-85 106-189 (295)
108 1kag_A SKI, shikimate kinase I 94.6 0.015 5.1E-07 39.9 2.0 17 1-17 12-28 (173)
109 2rhm_A Putative kinase; P-loop 94.5 0.015 5.2E-07 40.6 2.0 17 1-17 13-29 (193)
110 1via_A Shikimate kinase; struc 94.5 0.016 5.5E-07 40.0 2.0 17 1-17 12-28 (175)
111 3dm5_A SRP54, signal recogniti 94.4 0.08 2.7E-06 42.5 6.1 17 1-17 108-124 (443)
112 3vr4_D V-type sodium ATPase su 94.4 0.029 9.8E-07 45.2 3.5 85 2-87 160-259 (465)
113 3cmu_A Protein RECA, recombina 94.4 0.11 3.8E-06 49.0 7.7 80 1-88 391-473 (2050)
114 3n70_A Transport activator; si 94.3 0.027 9.4E-07 37.7 2.8 17 1-17 32-48 (145)
115 3cf2_A TER ATPase, transitiona 94.3 0.1 3.4E-06 45.1 6.8 63 1-88 519-582 (806)
116 3iij_A Coilin-interacting nucl 94.3 0.016 5.6E-07 40.1 1.7 17 1-17 19-35 (180)
117 2jaq_A Deoxyguanosine kinase; 94.3 0.019 6.4E-07 40.4 2.0 17 1-17 8-24 (205)
118 3t61_A Gluconokinase; PSI-biol 94.2 0.019 6.4E-07 40.6 2.0 17 1-17 26-42 (202)
119 1qvr_A CLPB protein; coiled co 94.1 0.099 3.4E-06 45.4 6.5 20 105-124 325-344 (854)
120 3cm0_A Adenylate kinase; ATP-b 94.1 0.022 7.5E-07 39.6 2.0 17 1-17 12-28 (186)
121 1zuh_A Shikimate kinase; alpha 94.0 0.023 8E-07 38.9 2.0 17 1-17 15-31 (168)
122 3bgw_A DNAB-like replicative h 94.0 0.15 5.1E-06 41.0 6.9 41 1-46 205-245 (444)
123 2ze6_A Isopentenyl transferase 94.0 0.02 6.8E-07 42.3 1.7 17 1-17 9-25 (253)
124 3cmw_A Protein RECA, recombina 94.0 0.11 3.7E-06 48.3 6.7 80 1-88 391-473 (1706)
125 3uie_A Adenylyl-sulfate kinase 94.0 0.023 7.9E-07 40.2 2.0 17 1-17 33-49 (200)
126 1tev_A UMP-CMP kinase; ploop, 93.9 0.025 8.4E-07 39.4 2.0 17 1-17 11-27 (196)
127 1e6c_A Shikimate kinase; phosp 93.9 0.025 8.6E-07 38.7 2.0 17 1-17 10-26 (173)
128 2iyv_A Shikimate kinase, SK; t 93.9 0.024 8.3E-07 39.3 2.0 17 1-17 10-26 (184)
129 3cwq_A Para family chromosome 93.9 0.055 1.9E-06 38.7 3.9 35 2-40 10-44 (209)
130 2vli_A Antibiotic resistance p 93.9 0.015 5.1E-07 40.3 0.8 17 1-17 13-29 (183)
131 2plr_A DTMP kinase, probable t 93.9 0.025 8.6E-07 40.0 2.0 17 1-17 12-28 (213)
132 1knq_A Gluconate kinase; ALFA/ 93.8 0.025 8.7E-07 38.9 2.0 17 1-17 16-32 (175)
133 4dzz_A Plasmid partitioning pr 93.8 0.041 1.4E-06 38.7 3.1 35 2-39 11-45 (206)
134 2qor_A Guanylate kinase; phosp 93.8 0.026 8.8E-07 40.1 2.0 17 1-17 20-36 (204)
135 2pt5_A Shikimate kinase, SK; a 93.8 0.027 9.2E-07 38.4 2.0 17 1-17 8-24 (168)
136 3gqb_B V-type ATP synthase bet 93.8 0.049 1.7E-06 43.9 3.7 85 2-87 156-262 (464)
137 3kjh_A CO dehydrogenase/acetyl 93.8 0.05 1.7E-06 39.5 3.6 34 2-38 9-42 (254)
138 3mfy_A V-type ATP synthase alp 93.7 0.11 3.6E-06 43.0 5.6 39 2-45 236-275 (588)
139 1ypw_A Transitional endoplasmi 93.7 0.083 2.8E-06 45.6 5.3 17 1-17 246-262 (806)
140 2yvu_A Probable adenylyl-sulfa 93.7 0.028 9.6E-07 39.2 2.0 17 1-17 21-37 (186)
141 4eun_A Thermoresistant glucoki 93.7 0.028 9.7E-07 39.7 2.0 17 1-17 37-53 (200)
142 3a4m_A L-seryl-tRNA(SEC) kinas 93.7 0.028 9.5E-07 41.7 2.0 17 1-17 12-28 (260)
143 2c95_A Adenylate kinase 1; tra 93.6 0.029 1E-06 39.2 2.0 17 1-17 17-33 (196)
144 1y63_A LMAJ004144AAA protein; 93.6 0.029 9.9E-07 39.2 2.0 16 1-16 18-33 (184)
145 2cdn_A Adenylate kinase; phosp 93.6 0.03 1E-06 39.5 2.0 17 1-17 28-44 (201)
146 1zd8_A GTP:AMP phosphotransfer 93.6 0.027 9.2E-07 40.7 1.8 17 1-17 15-31 (227)
147 1kgd_A CASK, peripheral plasma 93.6 0.031 1E-06 38.9 2.0 17 1-17 13-29 (180)
148 2bwj_A Adenylate kinase 5; pho 93.6 0.031 1E-06 39.2 2.0 17 1-17 20-36 (199)
149 1in4_A RUVB, holliday junction 93.6 0.028 9.7E-07 43.2 2.0 36 106-141 174-220 (334)
150 3dl0_A Adenylate kinase; phosp 93.5 0.027 9.4E-07 40.2 1.7 17 1-17 8-24 (216)
151 2bdt_A BH3686; alpha-beta prot 93.5 0.032 1.1E-06 39.0 2.0 16 1-16 10-25 (189)
152 2r8r_A Sensor protein; KDPD, P 93.5 0.042 1.4E-06 40.1 2.6 31 1-34 14-44 (228)
153 2r6a_A DNAB helicase, replicat 93.5 0.13 4.3E-06 41.4 5.7 40 2-45 212-251 (454)
154 1aky_A Adenylate kinase; ATP:A 93.4 0.033 1.1E-06 40.0 2.0 17 1-17 12-28 (220)
155 2c61_A A-type ATP synthase non 93.4 0.053 1.8E-06 43.8 3.4 85 2-87 161-260 (469)
156 3fb4_A Adenylate kinase; psych 93.4 0.029 9.9E-07 40.0 1.7 17 1-17 8-24 (216)
157 1zak_A Adenylate kinase; ATP:A 93.4 0.027 9.2E-07 40.5 1.5 17 1-17 13-29 (222)
158 1g5t_A COB(I)alamin adenosyltr 93.4 0.026 9E-07 40.2 1.4 83 2-87 37-131 (196)
159 2pbr_A DTMP kinase, thymidylat 93.4 0.034 1.1E-06 38.7 2.0 17 1-17 8-24 (195)
160 2r62_A Cell division protease 93.4 0.032 1.1E-06 41.2 1.9 34 105-138 176-219 (268)
161 2v54_A DTMP kinase, thymidylat 93.4 0.037 1.3E-06 38.9 2.2 17 1-17 12-28 (204)
162 3l0o_A Transcription terminati 93.3 0.077 2.6E-06 42.0 4.1 33 2-35 184-216 (427)
163 1gvn_B Zeta; postsegregational 93.3 0.025 8.6E-07 42.7 1.3 17 1-17 41-57 (287)
164 3oaa_A ATP synthase subunit al 93.3 0.14 4.8E-06 41.7 5.6 81 2-87 171-265 (513)
165 1ixz_A ATP-dependent metallopr 93.3 0.035 1.2E-06 40.7 2.0 34 104-137 178-221 (254)
166 2r9v_A ATP synthase subunit al 93.3 0.12 4.1E-06 42.2 5.2 81 2-87 184-278 (515)
167 1ukz_A Uridylate kinase; trans 93.3 0.032 1.1E-06 39.4 1.7 17 1-17 23-39 (203)
168 1fx0_A ATP synthase alpha chai 93.3 0.24 8.2E-06 40.4 6.9 81 2-87 172-266 (507)
169 1r6b_X CLPA protein; AAA+, N-t 93.2 0.21 7.2E-06 42.7 7.0 19 106-124 343-361 (758)
170 1qf9_A UMP/CMP kinase, protein 93.2 0.037 1.3E-06 38.4 2.0 17 1-17 14-30 (194)
171 2wwf_A Thymidilate kinase, put 93.2 0.038 1.3E-06 39.1 2.0 24 1-26 18-41 (212)
172 3be4_A Adenylate kinase; malar 93.1 0.032 1.1E-06 40.0 1.6 17 1-17 13-29 (217)
173 2j41_A Guanylate kinase; GMP, 93.0 0.04 1.4E-06 38.8 2.0 17 1-17 14-30 (207)
174 2z0h_A DTMP kinase, thymidylat 93.0 0.041 1.4E-06 38.4 2.0 17 1-17 8-24 (197)
175 2if2_A Dephospho-COA kinase; a 93.0 0.043 1.5E-06 38.7 2.0 15 1-15 9-23 (204)
176 3tr0_A Guanylate kinase, GMP k 92.9 0.046 1.6E-06 38.5 2.1 17 1-17 15-31 (205)
177 1nn5_A Similar to deoxythymidy 92.9 0.043 1.5E-06 38.9 2.0 17 1-17 17-33 (215)
178 1e4v_A Adenylate kinase; trans 92.9 0.044 1.5E-06 39.2 2.0 17 1-17 8-24 (214)
179 1ak2_A Adenylate kinase isoenz 92.8 0.037 1.3E-06 40.1 1.6 17 1-17 24-40 (233)
180 3tau_A Guanylate kinase, GMP k 92.8 0.049 1.7E-06 38.8 2.1 17 1-17 16-32 (208)
181 2bbw_A Adenylate kinase 4, AK4 92.8 0.048 1.6E-06 39.9 2.1 17 1-17 35-51 (246)
182 1cke_A CK, MSSA, protein (cyti 92.8 0.047 1.6E-06 39.1 2.0 17 1-17 13-29 (227)
183 3zq6_A Putative arsenical pump 92.8 0.094 3.2E-06 40.2 3.8 17 2-18 23-39 (324)
184 1ex7_A Guanylate kinase; subst 92.7 0.044 1.5E-06 38.7 1.7 17 1-17 9-25 (186)
185 1ye8_A Protein THEP1, hypothet 92.7 0.053 1.8E-06 37.9 2.1 17 1-17 8-24 (178)
186 2xb4_A Adenylate kinase; ATP-b 92.7 0.05 1.7E-06 39.2 2.0 17 1-17 8-24 (223)
187 1jjv_A Dephospho-COA kinase; P 92.6 0.052 1.8E-06 38.4 2.1 15 1-15 10-24 (206)
188 4gp7_A Metallophosphoesterase; 92.6 0.045 1.6E-06 37.8 1.7 15 1-15 17-31 (171)
189 2qe7_A ATP synthase subunit al 92.6 0.2 6.8E-06 40.8 5.6 81 2-87 171-265 (502)
190 1cp2_A CP2, nitrogenase iron p 92.6 0.089 3E-06 38.8 3.4 29 2-33 10-38 (269)
191 2pez_A Bifunctional 3'-phospho 92.5 0.054 1.9E-06 37.4 2.0 17 1-17 13-29 (179)
192 3iqw_A Tail-anchored protein t 92.5 0.11 3.7E-06 40.2 3.8 17 2-18 25-41 (334)
193 1iy2_A ATP-dependent metallopr 92.5 0.052 1.8E-06 40.4 2.0 33 105-137 203-245 (278)
194 3c8u_A Fructokinase; YP_612366 92.5 0.044 1.5E-06 39.0 1.6 17 1-17 30-46 (208)
195 3tlx_A Adenylate kinase 2; str 92.5 0.045 1.5E-06 40.1 1.6 17 1-17 37-53 (243)
196 1yrb_A ATP(GTP)binding protein 92.4 0.053 1.8E-06 39.8 1.9 17 1-17 22-38 (262)
197 2p5t_B PEZT; postsegregational 92.4 0.032 1.1E-06 41.1 0.7 17 1-17 40-56 (253)
198 1ofh_A ATP-dependent HSL prote 92.4 0.055 1.9E-06 40.5 2.0 17 1-17 58-74 (310)
199 1m7g_A Adenylylsulfate kinase; 92.3 0.057 1.9E-06 38.5 2.0 17 1-17 33-49 (211)
200 2qt1_A Nicotinamide riboside k 92.3 0.059 2E-06 38.1 2.1 17 1-17 29-45 (207)
201 1uf9_A TT1252 protein; P-loop, 92.2 0.064 2.2E-06 37.6 2.1 16 1-16 16-31 (203)
202 1ltq_A Polynucleotide kinase; 92.2 0.059 2E-06 40.5 2.0 16 1-16 10-25 (301)
203 3e70_C DPA, signal recognition 92.2 0.46 1.6E-05 36.5 7.0 48 1-51 137-185 (328)
204 3a00_A Guanylate kinase, GMP k 92.2 0.065 2.2E-06 37.4 2.0 17 1-17 9-25 (186)
205 2zts_A Putative uncharacterize 91.9 0.058 2E-06 39.1 1.6 41 1-45 38-78 (251)
206 3cmw_A Protein RECA, recombina 91.9 0.32 1.1E-05 45.3 6.6 79 1-88 1439-1521(1706)
207 3asz_A Uridine kinase; cytidin 91.9 0.071 2.4E-06 37.8 2.0 17 1-17 14-30 (211)
208 3k9g_A PF-32 protein; ssgcid, 91.9 0.067 2.3E-06 39.5 1.9 34 2-39 37-70 (267)
209 1gtv_A TMK, thymidylate kinase 91.8 0.035 1.2E-06 39.4 0.3 16 2-17 9-24 (214)
210 3ea0_A ATPase, para family; al 91.8 0.07 2.4E-06 38.6 1.9 30 2-33 14-43 (245)
211 2bjv_A PSP operon transcriptio 91.8 0.084 2.9E-06 38.9 2.3 17 1-17 37-53 (265)
212 3q9l_A Septum site-determining 91.7 0.13 4.4E-06 37.5 3.3 30 2-34 12-41 (260)
213 3hjn_A DTMP kinase, thymidylat 91.7 0.18 6.1E-06 35.8 3.9 81 2-87 9-92 (197)
214 3sr0_A Adenylate kinase; phosp 91.7 0.063 2.1E-06 38.5 1.5 17 1-17 8-24 (206)
215 3end_A Light-independent proto 91.6 0.12 4.1E-06 39.0 3.2 29 2-33 50-78 (307)
216 2j37_W Signal recognition part 91.6 0.63 2.1E-05 38.0 7.5 17 1-17 109-125 (504)
217 3hws_A ATP-dependent CLP prote 91.6 0.074 2.5E-06 41.2 2.0 17 1-17 59-75 (363)
218 2afh_E Nitrogenase iron protei 91.6 0.074 2.5E-06 39.8 1.9 29 2-33 11-39 (289)
219 2ehv_A Hypothetical protein PH 91.6 0.081 2.8E-06 38.3 2.1 15 1-15 38-52 (251)
220 2ph1_A Nucleotide-binding prot 91.5 0.075 2.6E-06 39.2 1.9 17 2-18 28-44 (262)
221 3ug7_A Arsenical pump-driving 91.5 0.12 3.9E-06 40.1 3.0 17 2-18 35-51 (349)
222 3nwj_A ATSK2; P loop, shikimat 91.5 0.079 2.7E-06 39.2 2.0 17 1-17 56-72 (250)
223 2xj4_A MIPZ; replication, cell 91.5 0.13 4.4E-06 38.5 3.2 37 2-41 14-51 (286)
224 1lvg_A Guanylate kinase, GMP k 91.5 0.085 2.9E-06 37.3 2.1 16 1-16 12-27 (198)
225 1um8_A ATP-dependent CLP prote 91.5 0.079 2.7E-06 41.3 2.0 17 1-17 80-96 (376)
226 1tue_A Replication protein E1; 91.4 0.07 2.4E-06 38.4 1.4 17 1-17 66-82 (212)
227 1rz3_A Hypothetical protein rb 91.3 0.088 3E-06 37.2 2.0 17 1-17 30-46 (201)
228 1vht_A Dephospho-COA kinase; s 91.2 0.092 3.1E-06 37.5 2.0 15 1-15 12-26 (218)
229 2c9o_A RUVB-like 1; hexameric 91.2 0.086 2.9E-06 42.4 2.0 36 106-141 360-407 (456)
230 3zvl_A Bifunctional polynucleo 91.2 0.09 3.1E-06 41.8 2.1 17 1-17 266-282 (416)
231 2grj_A Dephospho-COA kinase; T 91.1 0.094 3.2E-06 37.1 2.0 16 1-16 20-35 (192)
232 1znw_A Guanylate kinase, GMP k 91.1 0.096 3.3E-06 37.2 2.0 17 1-17 28-44 (207)
233 2oze_A ORF delta'; para, walke 91.1 0.089 3E-06 39.5 1.9 30 2-34 46-75 (298)
234 1uj2_A Uridine-cytidine kinase 91.1 0.092 3.2E-06 38.5 2.0 17 1-17 30-46 (252)
235 1xjc_A MOBB protein homolog; s 91.1 0.1 3.4E-06 36.3 2.0 17 1-17 12-28 (169)
236 1g3q_A MIND ATPase, cell divis 91.0 0.091 3.1E-06 37.9 1.9 30 2-34 12-41 (237)
237 4e22_A Cytidylate kinase; P-lo 91.0 0.099 3.4E-06 38.5 2.1 17 1-17 35-51 (252)
238 3tif_A Uncharacterized ABC tra 91.0 0.17 5.9E-06 36.9 3.3 17 1-17 39-55 (235)
239 2woo_A ATPase GET3; tail-ancho 91.0 0.18 6.3E-06 38.6 3.6 17 2-18 28-44 (329)
240 3umf_A Adenylate kinase; rossm 91.0 0.081 2.8E-06 38.3 1.5 17 1-17 37-53 (217)
241 3ake_A Cytidylate kinase; CMP 91.0 0.099 3.4E-06 36.8 2.0 17 1-17 10-26 (208)
242 2qgz_A Helicase loader, putati 90.9 0.097 3.3E-06 39.8 2.0 17 1-17 160-176 (308)
243 4edh_A DTMP kinase, thymidylat 90.8 0.32 1.1E-05 34.9 4.6 17 1-17 14-30 (213)
244 3llm_A ATP-dependent RNA helic 90.8 0.38 1.3E-05 34.7 5.0 85 2-87 85-187 (235)
245 3vr4_A V-type sodium ATPase ca 90.8 0.57 2E-05 38.8 6.4 39 2-45 241-280 (600)
246 3r20_A Cytidylate kinase; stru 90.8 0.089 3E-06 38.5 1.6 17 1-17 17-33 (233)
247 3fkq_A NTRC-like two-domain pr 90.7 0.12 4E-06 40.4 2.3 29 2-33 153-181 (373)
248 1z6g_A Guanylate kinase; struc 90.7 0.11 3.8E-06 37.3 2.0 17 1-17 31-47 (218)
249 3ney_A 55 kDa erythrocyte memb 90.6 0.11 3.9E-06 36.9 2.0 17 1-17 27-43 (197)
250 2pcj_A ABC transporter, lipopr 90.6 0.2 6.9E-06 36.2 3.4 17 1-17 38-54 (224)
251 3pg5_A Uncharacterized protein 90.6 0.15 5E-06 39.7 2.8 35 2-39 11-45 (361)
252 2r44_A Uncharacterized protein 90.6 0.082 2.8E-06 40.3 1.3 17 1-17 54-70 (331)
253 3lv8_A DTMP kinase, thymidylat 90.5 0.31 1E-05 35.7 4.3 28 1-30 35-62 (236)
254 1byi_A Dethiobiotin synthase; 90.5 0.11 3.7E-06 37.1 1.9 17 2-18 11-27 (224)
255 4tmk_A Protein (thymidylate ki 90.5 0.33 1.1E-05 34.9 4.4 45 1-47 11-55 (213)
256 1nlf_A Regulatory protein REPA 90.3 0.12 4.1E-06 38.5 2.0 17 1-17 38-54 (279)
257 4eaq_A DTMP kinase, thymidylat 90.3 0.12 4.2E-06 37.5 2.0 18 1-18 34-51 (229)
258 1wcv_1 SOJ, segregation protei 90.3 0.11 3.9E-06 38.1 1.9 30 2-34 16-45 (257)
259 3aez_A Pantothenate kinase; tr 90.3 0.12 4.2E-06 39.4 2.1 17 1-17 98-114 (312)
260 1b0u_A Histidine permease; ABC 90.3 0.22 7.5E-06 37.0 3.4 17 1-17 40-56 (262)
261 2onk_A Molybdate/tungstate ABC 90.3 0.24 8.3E-06 36.2 3.6 17 1-17 32-48 (240)
262 3gfo_A Cobalt import ATP-bindi 90.3 0.22 7.5E-06 37.3 3.4 23 66-88 151-173 (275)
263 4akg_A Glutathione S-transfera 90.3 0.95 3.2E-05 44.2 8.3 70 1-87 1275-1347(2695)
264 1hyq_A MIND, cell division inh 90.2 0.12 3.9E-06 38.0 1.8 30 2-34 12-41 (263)
265 2ocp_A DGK, deoxyguanosine kin 90.2 0.11 3.9E-06 37.7 1.8 17 1-17 10-26 (241)
266 2v3c_C SRP54, signal recogniti 90.2 0.081 2.8E-06 42.4 1.0 17 1-17 107-123 (432)
267 1odf_A YGR205W, hypothetical 3 90.2 0.12 4.2E-06 39.0 2.0 17 1-17 39-55 (290)
268 3crm_A TRNA delta(2)-isopenten 90.2 0.11 3.9E-06 39.9 1.8 17 1-17 13-29 (323)
269 2jeo_A Uridine-cytidine kinase 90.2 0.13 4.4E-06 37.6 2.0 17 1-17 33-49 (245)
270 2yhs_A FTSY, cell division pro 90.2 0.56 1.9E-05 38.2 5.9 33 1-37 301-333 (503)
271 1cr0_A DNA primase/helicase; R 90.1 0.13 4.4E-06 38.6 2.0 17 1-17 43-59 (296)
272 4g1u_C Hemin import ATP-bindin 90.1 0.24 8.2E-06 36.9 3.5 17 1-17 45-61 (266)
273 3fwy_A Light-independent proto 90.1 0.12 4.2E-06 39.5 1.9 29 2-33 57-85 (314)
274 2f6r_A COA synthase, bifunctio 90.1 0.13 4.6E-06 38.5 2.1 15 1-15 83-97 (281)
275 1s96_A Guanylate kinase, GMP k 90.1 0.14 4.7E-06 37.0 2.1 17 1-17 24-40 (219)
276 4hlc_A DTMP kinase, thymidylat 90.0 0.46 1.6E-05 33.8 4.8 17 2-18 11-27 (205)
277 2pze_A Cystic fibrosis transme 89.9 0.23 7.9E-06 36.0 3.2 17 1-17 42-58 (229)
278 1sgw_A Putative ABC transporte 89.8 0.26 9E-06 35.4 3.4 17 1-17 43-59 (214)
279 3gmt_A Adenylate kinase; ssgci 89.8 0.12 4.1E-06 37.8 1.6 17 1-17 16-32 (230)
280 1htw_A HI0065; nucleotide-bind 89.8 0.15 5.3E-06 34.8 2.0 16 2-17 42-57 (158)
281 2ff7_A Alpha-hemolysin translo 89.8 0.25 8.7E-06 36.3 3.3 17 1-17 43-59 (247)
282 2hf9_A Probable hydrogenase ni 89.6 0.14 4.8E-06 36.5 1.9 16 2-17 47-62 (226)
283 2olj_A Amino acid ABC transpor 89.6 0.27 9.1E-06 36.6 3.4 17 1-17 58-74 (263)
284 1ji0_A ABC transporter; ATP bi 89.6 0.27 9.2E-06 35.9 3.3 17 1-17 40-56 (240)
285 2i3b_A HCR-ntpase, human cance 89.6 0.17 5.7E-06 35.7 2.1 17 1-17 9-25 (189)
286 1np6_A Molybdopterin-guanine d 89.6 0.16 5.5E-06 35.3 2.0 17 1-17 14-30 (174)
287 2ce2_X GTPase HRAS; signaling 89.5 0.16 5.4E-06 33.8 2.0 15 2-16 12-26 (166)
288 3nbx_X ATPase RAVA; AAA+ ATPas 89.5 0.13 4.4E-06 42.0 1.7 17 1-17 49-65 (500)
289 1g8p_A Magnesium-chelatase 38 89.5 0.084 2.9E-06 40.3 0.6 17 1-17 53-69 (350)
290 3a8t_A Adenylate isopentenyltr 89.5 0.16 5.6E-06 39.2 2.2 17 1-17 48-64 (339)
291 2ixe_A Antigen peptide transpo 89.5 0.27 9.3E-06 36.7 3.3 17 1-17 53-69 (271)
292 1g6h_A High-affinity branched- 89.4 0.28 9.6E-06 36.2 3.3 17 1-17 41-57 (257)
293 1g41_A Heat shock protein HSLU 89.3 0.15 5.3E-06 40.9 2.0 17 1-17 58-74 (444)
294 1p5z_B DCK, deoxycytidine kina 89.3 0.091 3.1E-06 38.8 0.6 17 1-17 32-48 (263)
295 1vpl_A ABC transporter, ATP-bi 89.2 0.3 1E-05 36.1 3.4 17 1-17 49-65 (256)
296 3ez2_A Plasmid partition prote 89.2 0.16 5.3E-06 40.0 1.9 17 2-18 118-134 (398)
297 3d3q_A TRNA delta(2)-isopenten 89.2 0.15 5.1E-06 39.5 1.7 17 1-17 15-31 (340)
298 1mv5_A LMRA, multidrug resista 89.1 0.26 8.8E-06 36.1 2.9 17 1-17 36-52 (243)
299 1ojl_A Transcriptional regulat 89.1 0.21 7.2E-06 37.8 2.5 17 1-17 33-49 (304)
300 2ga8_A Hypothetical 39.9 kDa p 89.0 0.17 5.9E-06 39.4 2.0 17 1-17 32-48 (359)
301 1g8f_A Sulfate adenylyltransfe 89.0 0.14 4.8E-06 41.9 1.6 18 1-18 403-420 (511)
302 2ck3_A ATP synthase subunit al 88.9 0.56 1.9E-05 38.3 5.0 86 2-88 171-274 (510)
303 2yz2_A Putative ABC transporte 88.9 0.31 1.1E-05 36.2 3.3 22 67-88 147-168 (266)
304 3pxg_A Negative regulator of g 88.9 0.14 4.7E-06 41.3 1.4 20 105-124 318-337 (468)
305 2dyk_A GTP-binding protein; GT 88.9 0.2 6.9E-06 33.2 2.1 15 2-16 10-24 (161)
306 2ihy_A ABC transporter, ATP-bi 88.8 0.33 1.1E-05 36.4 3.4 17 1-17 55-71 (279)
307 1rj9_A FTSY, signal recognitio 88.8 0.18 6.3E-06 38.3 2.0 17 1-17 110-126 (304)
308 3tqc_A Pantothenate kinase; bi 88.8 0.19 6.5E-06 38.6 2.1 17 1-17 100-116 (321)
309 1oix_A RAS-related protein RAB 88.8 0.2 7E-06 34.8 2.1 15 2-16 38-52 (191)
310 2zej_A Dardarin, leucine-rich 88.7 0.17 6E-06 34.8 1.7 15 2-16 11-25 (184)
311 2cbz_A Multidrug resistance-as 88.7 0.18 6E-06 36.9 1.8 17 1-17 39-55 (237)
312 2qmh_A HPR kinase/phosphorylas 88.6 0.17 6E-06 36.2 1.7 17 1-17 42-58 (205)
313 2wji_A Ferrous iron transport 88.5 0.23 7.7E-06 33.6 2.1 15 2-16 12-26 (165)
314 3lnc_A Guanylate kinase, GMP k 88.5 0.12 4.1E-06 37.3 0.8 16 1-16 35-51 (231)
315 3fvq_A Fe(3+) IONS import ATP- 88.4 0.38 1.3E-05 37.5 3.6 47 42-88 119-168 (359)
316 2wsm_A Hydrogenase expression/ 88.3 0.2 6.8E-06 35.5 1.9 16 2-17 39-54 (221)
317 3con_A GTPase NRAS; structural 88.3 0.22 7.4E-06 34.3 2.0 15 2-16 30-44 (190)
318 3exa_A TRNA delta(2)-isopenten 88.3 0.22 7.7E-06 38.2 2.2 17 1-17 11-27 (322)
319 1sq5_A Pantothenate kinase; P- 88.2 0.22 7.4E-06 37.8 2.1 17 1-17 88-104 (308)
320 1ihu_A Arsenical pump-driving 88.2 0.32 1.1E-05 40.3 3.3 29 2-33 17-45 (589)
321 2axn_A 6-phosphofructo-2-kinas 88.2 0.2 6.9E-06 41.0 2.0 17 1-17 43-59 (520)
322 1bif_A 6-phosphofructo-2-kinas 88.1 0.21 7.1E-06 40.3 2.0 17 1-17 47-63 (469)
323 3io3_A DEHA2D07832P; chaperone 88.1 0.21 7.1E-06 38.8 1.9 16 2-17 27-42 (348)
324 1z2a_A RAS-related protein RAB 88.1 0.23 7.9E-06 33.2 2.0 15 2-16 14-28 (168)
325 2f1r_A Molybdopterin-guanine d 88.0 0.14 4.9E-06 35.5 0.9 16 2-17 11-26 (171)
326 2f9l_A RAB11B, member RAS onco 87.9 0.24 8.3E-06 34.5 2.1 15 2-16 14-28 (199)
327 3tqf_A HPR(Ser) kinase; transf 87.9 0.25 8.7E-06 34.5 2.1 16 1-16 24-39 (181)
328 2wjg_A FEOB, ferrous iron tran 87.9 0.26 8.8E-06 33.8 2.2 15 2-16 16-30 (188)
329 2nzj_A GTP-binding protein REM 87.7 0.26 8.9E-06 33.2 2.1 15 2-16 13-27 (175)
330 3b9q_A Chloroplast SRP recepto 87.7 0.25 8.4E-06 37.5 2.1 17 1-17 108-124 (302)
331 1u8z_A RAS-related protein RAL 87.4 0.26 9.1E-06 32.7 2.0 15 2-16 13-27 (168)
332 3foz_A TRNA delta(2)-isopenten 87.4 0.23 7.9E-06 38.0 1.8 17 1-17 18-34 (316)
333 2orw_A Thymidine kinase; TMTK, 87.4 0.23 7.9E-06 34.7 1.7 16 2-17 12-27 (184)
334 1q3t_A Cytidylate kinase; nucl 87.4 0.25 8.7E-06 35.7 1.9 17 1-17 24-40 (236)
335 3b85_A Phosphate starvation-in 87.3 0.19 6.6E-06 35.9 1.2 16 1-16 30-45 (208)
336 2woj_A ATPase GET3; tail-ancho 87.3 0.25 8.4E-06 38.4 1.9 16 2-17 27-42 (354)
337 2vp4_A Deoxynucleoside kinase; 87.2 0.18 6.1E-06 36.4 1.0 16 1-16 28-43 (230)
338 2qi9_C Vitamin B12 import ATP- 87.2 0.43 1.5E-05 35.1 3.1 17 1-17 34-50 (249)
339 3igf_A ALL4481 protein; two-do 87.1 0.21 7.2E-06 39.2 1.5 17 2-18 11-27 (374)
340 2h92_A Cytidylate kinase; ross 87.1 0.28 9.5E-06 34.8 2.0 17 1-17 11-27 (219)
341 1nrj_B SR-beta, signal recogni 87.0 0.29 1E-05 34.5 2.1 16 1-16 20-35 (218)
342 2it1_A 362AA long hypothetical 87.0 0.52 1.8E-05 36.8 3.6 47 42-88 114-163 (362)
343 2d2e_A SUFC protein; ABC-ATPas 87.0 0.28 9.7E-06 36.0 2.0 16 1-16 37-52 (250)
344 2ged_A SR-beta, signal recogni 87.0 0.31 1E-05 33.6 2.1 15 2-16 57-71 (193)
345 1v43_A Sugar-binding transport 86.9 0.52 1.8E-05 36.9 3.6 47 42-88 122-171 (372)
346 1svm_A Large T antigen; AAA+ f 86.9 0.27 9.1E-06 38.6 2.0 16 1-16 177-192 (377)
347 1z47_A CYSA, putative ABC-tran 86.9 0.52 1.8E-05 36.7 3.6 47 42-88 126-175 (355)
348 2erx_A GTP-binding protein DI- 86.8 0.31 1.1E-05 32.6 2.1 15 2-16 12-26 (172)
349 2yyz_A Sugar ABC transporter, 86.8 0.53 1.8E-05 36.7 3.6 47 42-88 114-163 (359)
350 3q72_A GTP-binding protein RAD 86.8 0.26 9E-06 32.9 1.6 15 2-16 11-25 (166)
351 3q85_A GTP-binding protein REM 86.8 0.33 1.1E-05 32.5 2.1 16 1-16 10-25 (169)
352 1g29_1 MALK, maltose transport 86.8 0.53 1.8E-05 36.8 3.6 16 1-16 37-52 (372)
353 1m7b_A RND3/RHOE small GTP-bin 86.7 0.32 1.1E-05 33.4 2.1 15 2-16 16-30 (184)
354 1z08_A RAS-related protein RAB 86.7 0.33 1.1E-05 32.5 2.1 15 2-16 15-29 (170)
355 1ek0_A Protein (GTP-binding pr 86.7 0.32 1.1E-05 32.4 2.1 15 2-16 12-26 (170)
356 3d31_A Sulfate/molybdate ABC t 86.7 0.42 1.4E-05 37.1 2.9 47 42-88 108-157 (348)
357 2gza_A Type IV secretion syste 86.6 0.62 2.1E-05 36.2 3.9 27 1-31 183-209 (361)
358 3v9p_A DTMP kinase, thymidylat 86.6 0.16 5.6E-06 36.9 0.5 18 1-18 33-50 (227)
359 3rlf_A Maltose/maltodextrin im 86.6 0.56 1.9E-05 36.9 3.6 17 1-17 37-53 (381)
360 1kao_A RAP2A; GTP-binding prot 86.6 0.34 1.2E-05 32.2 2.1 15 2-16 12-26 (167)
361 3nh6_A ATP-binding cassette SU 86.5 0.39 1.3E-05 36.6 2.6 17 1-17 88-104 (306)
362 1c1y_A RAS-related protein RAP 86.5 0.33 1.1E-05 32.3 2.1 15 2-16 12-26 (167)
363 1z0j_A RAB-22, RAS-related pro 86.5 0.34 1.2E-05 32.4 2.1 15 2-16 15-29 (170)
364 2zu0_C Probable ATP-dependent 86.5 0.32 1.1E-05 36.2 2.1 16 1-16 54-69 (267)
365 2cxx_A Probable GTP-binding pr 86.4 0.33 1.1E-05 33.2 2.0 15 2-16 10-24 (190)
366 2gj8_A MNME, tRNA modification 86.2 0.37 1.3E-05 32.9 2.2 15 2-16 13-27 (172)
367 3pqc_A Probable GTP-binding pr 86.2 0.35 1.2E-05 33.2 2.1 15 2-16 32-46 (195)
368 1p6x_A Thymidine kinase; P-loo 86.1 0.32 1.1E-05 37.6 1.9 17 2-18 16-32 (334)
369 3tmk_A Thymidylate kinase; pho 86.1 0.28 9.7E-06 35.3 1.6 18 1-18 13-30 (216)
370 1ky3_A GTP-binding protein YPT 86.1 0.37 1.3E-05 32.6 2.1 15 2-16 17-31 (182)
371 2fn4_A P23, RAS-related protei 86.1 0.35 1.2E-05 32.7 2.0 15 2-16 18-32 (181)
372 2hxs_A RAB-26, RAS-related pro 86.0 0.39 1.3E-05 32.4 2.2 15 2-16 15-29 (178)
373 1svi_A GTP-binding protein YSX 86.0 0.36 1.2E-05 33.3 2.1 15 2-16 32-46 (195)
374 3ld9_A DTMP kinase, thymidylat 86.0 0.34 1.2E-05 35.1 2.0 18 1-18 29-46 (223)
375 1ypw_A Transitional endoplasmi 86.0 0.31 1.1E-05 42.1 2.0 17 1-17 519-535 (806)
376 1x6v_B Bifunctional 3'-phospho 86.0 0.31 1.1E-05 40.9 2.0 17 1-17 60-76 (630)
377 3ihw_A Centg3; RAS, centaurin, 85.8 0.36 1.2E-05 33.3 2.0 15 2-16 29-43 (184)
378 1m8p_A Sulfate adenylyltransfe 85.8 0.32 1.1E-05 40.3 2.0 17 1-17 404-420 (573)
379 3k1j_A LON protease, ATP-depen 85.8 0.33 1.1E-05 40.5 2.0 17 1-17 68-84 (604)
380 1m2o_B GTP-binding protein SAR 85.7 0.36 1.2E-05 33.4 2.0 15 2-16 32-46 (190)
381 2eyu_A Twitching motility prot 85.7 0.34 1.2E-05 35.9 1.9 17 1-17 33-49 (261)
382 2ghi_A Transport protein; mult 85.7 0.33 1.1E-05 36.0 1.8 17 1-17 54-70 (260)
383 2fz4_A DNA repair protein RAD2 85.7 0.93 3.2E-05 32.8 4.2 15 2-16 117-131 (237)
384 1r2q_A RAS-related protein RAB 85.7 0.37 1.3E-05 32.1 2.0 15 2-16 15-29 (170)
385 3c5c_A RAS-like protein 12; GD 85.7 0.37 1.3E-05 33.3 2.0 15 2-16 30-44 (187)
386 3tui_C Methionine import ATP-b 85.7 0.67 2.3E-05 36.2 3.6 47 42-88 144-193 (366)
387 1lw7_A Transcriptional regulat 85.7 0.33 1.1E-05 37.7 1.8 16 2-17 179-194 (365)
388 1a7j_A Phosphoribulokinase; tr 85.7 0.15 5.1E-06 38.5 -0.1 17 1-17 13-29 (290)
389 1z0f_A RAB14, member RAS oncog 85.7 0.37 1.3E-05 32.5 2.0 15 2-16 24-38 (179)
390 2lkc_A Translation initiation 85.6 0.38 1.3E-05 32.5 2.0 15 2-16 17-31 (178)
391 1wms_A RAB-9, RAB9, RAS-relate 85.6 0.4 1.4E-05 32.3 2.1 15 2-16 16-30 (177)
392 3cr8_A Sulfate adenylyltranfer 85.6 0.26 8.8E-06 40.7 1.3 17 1-17 377-393 (552)
393 1g16_A RAS-related protein SEC 85.6 0.38 1.3E-05 32.1 2.0 15 2-16 12-26 (170)
394 2iwr_A Centaurin gamma 1; ANK 85.6 0.29 1E-05 33.2 1.4 15 2-16 16-30 (178)
395 1r8s_A ADP-ribosylation factor 85.5 0.37 1.3E-05 32.1 1.9 15 2-16 9-23 (164)
396 2pt7_A CAG-ALFA; ATPase, prote 85.5 0.65 2.2E-05 35.6 3.4 73 2-88 180-252 (330)
397 1upt_A ARL1, ADP-ribosylation 85.4 0.39 1.3E-05 32.1 2.0 15 2-16 16-30 (171)
398 2og2_A Putative signal recogni 85.4 0.37 1.2E-05 37.6 2.0 17 1-17 165-181 (359)
399 3ez9_A Para; DNA binding, wing 85.4 0.18 6.1E-06 39.7 0.2 16 2-17 121-136 (403)
400 2bme_A RAB4A, RAS-related prot 85.4 0.41 1.4E-05 32.7 2.1 15 2-16 19-33 (186)
401 1c9k_A COBU, adenosylcobinamid 85.3 0.41 1.4E-05 33.5 2.1 15 2-16 8-22 (180)
402 2nq2_C Hypothetical ABC transp 85.3 0.36 1.2E-05 35.6 1.9 17 1-17 39-55 (253)
403 1fzq_A ADP-ribosylation factor 85.3 0.34 1.2E-05 33.2 1.7 15 2-16 25-39 (181)
404 3tw8_B RAS-related protein RAB 85.3 0.36 1.2E-05 32.6 1.8 15 2-16 18-32 (181)
405 1f6b_A SAR1; gtpases, N-termin 85.3 0.34 1.2E-05 33.8 1.7 15 2-16 34-48 (198)
406 3kkq_A RAS-related protein M-R 85.3 0.4 1.4E-05 32.7 2.0 15 2-16 27-41 (183)
407 2a9k_A RAS-related protein RAL 85.3 0.4 1.4E-05 32.6 2.0 15 2-16 27-41 (187)
408 4dsu_A GTPase KRAS, isoform 2B 85.2 0.43 1.5E-05 32.5 2.1 15 2-16 13-27 (189)
409 3fdi_A Uncharacterized protein 85.1 0.37 1.3E-05 34.2 1.8 17 1-17 14-30 (201)
410 1zu4_A FTSY; GTPase, signal re 85.1 0.36 1.2E-05 36.9 1.9 18 1-18 113-130 (320)
411 3pxi_A Negative regulator of g 85.1 0.29 1E-05 41.8 1.4 20 105-124 318-337 (758)
412 2y8e_A RAB-protein 6, GH09086P 85.0 0.41 1.4E-05 32.2 2.0 15 2-16 23-37 (179)
413 3bc1_A RAS-related protein RAB 85.0 0.41 1.4E-05 32.7 2.0 15 2-16 20-34 (195)
414 1mh1_A RAC1; GTP-binding, GTPa 85.0 0.41 1.4E-05 32.5 2.0 15 2-16 14-28 (186)
415 1e2k_A Thymidine kinase; trans 85.0 0.34 1.2E-05 37.4 1.6 16 2-17 13-28 (331)
416 3t1o_A Gliding protein MGLA; G 85.0 0.43 1.5E-05 32.8 2.0 16 2-17 23-38 (198)
417 1oxx_K GLCV, glucose, ABC tran 84.8 0.48 1.6E-05 36.8 2.4 47 42-88 121-170 (353)
418 2efe_B Small GTP-binding prote 84.8 0.46 1.6E-05 32.2 2.1 15 2-16 21-35 (181)
419 2pjz_A Hypothetical protein ST 84.8 0.39 1.3E-05 35.6 1.9 16 1-16 38-53 (263)
420 2v9p_A Replication protein E1; 84.7 0.42 1.5E-05 36.4 2.0 16 1-16 134-149 (305)
421 2fh5_B SR-beta, signal recogni 84.6 0.43 1.5E-05 33.5 2.0 15 2-16 16-30 (214)
422 2atv_A RERG, RAS-like estrogen 84.5 0.47 1.6E-05 32.8 2.1 15 2-16 37-51 (196)
423 3bwd_D RAC-like GTP-binding pr 84.5 0.45 1.5E-05 32.2 2.0 15 2-16 17-31 (182)
424 2g6b_A RAS-related protein RAB 84.5 0.45 1.5E-05 32.2 2.0 15 2-16 19-33 (180)
425 3sop_A Neuronal-specific septi 84.5 0.43 1.5E-05 35.5 2.0 16 1-16 10-25 (270)
426 4dkx_A RAS-related protein RAB 84.5 0.44 1.5E-05 34.1 2.0 15 2-16 22-36 (216)
427 3t5g_A GTP-binding protein RHE 84.4 0.46 1.6E-05 32.3 2.0 15 2-16 15-29 (181)
428 3pxi_A Negative regulator of g 84.4 0.53 1.8E-05 40.2 2.7 20 105-124 655-674 (758)
429 3llu_A RAS-related GTP-binding 84.3 0.47 1.6E-05 32.9 2.0 16 2-17 29-44 (196)
430 1u0j_A DNA replication protein 84.2 0.45 1.6E-05 35.5 2.0 16 1-16 112-127 (267)
431 1ksh_A ARF-like protein 2; sma 84.2 0.45 1.5E-05 32.5 1.8 15 2-16 27-41 (186)
432 4b3f_X DNA-binding protein smu 84.2 0.42 1.4E-05 40.1 2.0 43 1-47 213-255 (646)
433 2oil_A CATX-8, RAS-related pro 84.1 0.47 1.6E-05 32.7 2.0 15 2-16 34-48 (193)
434 3kta_A Chromosome segregation 84.1 0.5 1.7E-05 32.4 2.1 14 2-15 35-48 (182)
435 1gwn_A RHO-related GTP-binding 84.0 0.5 1.7E-05 33.3 2.1 15 2-16 37-51 (205)
436 2ew1_A RAS-related protein RAB 84.0 0.48 1.7E-05 33.3 2.0 15 2-16 35-49 (201)
437 3clv_A RAB5 protein, putative; 83.9 0.53 1.8E-05 32.4 2.1 15 2-16 16-30 (208)
438 1zbd_A Rabphilin-3A; G protein 83.8 0.51 1.8E-05 32.8 2.1 15 2-16 17-31 (203)
439 3bfv_A CAPA1, CAPB2, membrane 83.8 0.47 1.6E-05 35.3 1.9 29 2-33 92-120 (271)
440 2h17_A ADP-ribosylation factor 83.8 0.53 1.8E-05 32.1 2.1 15 2-16 30-44 (181)
441 2bov_A RAla, RAS-related prote 83.8 0.5 1.7E-05 32.8 2.0 15 2-16 23-37 (206)
442 1of1_A Thymidine kinase; trans 83.7 0.45 1.5E-05 37.3 1.8 16 2-17 58-73 (376)
443 3tkl_A RAS-related protein RAB 83.7 0.53 1.8E-05 32.4 2.1 15 2-16 25-39 (196)
444 1vg8_A RAS-related protein RAB 83.7 0.54 1.8E-05 32.7 2.1 15 2-16 17-31 (207)
445 2cjw_A GTP-binding protein GEM 83.7 0.5 1.7E-05 32.8 1.9 14 2-15 15-28 (192)
446 3la6_A Tyrosine-protein kinase 83.7 1.3 4.6E-05 33.1 4.4 29 2-33 102-130 (286)
447 3oes_A GTPase rhebl1; small GT 83.6 0.51 1.7E-05 32.8 2.0 15 2-16 33-47 (201)
448 2gf9_A RAS-related protein RAB 83.5 0.52 1.8E-05 32.4 2.0 15 2-16 31-45 (189)
449 3reg_A RHO-like small GTPase; 83.5 0.52 1.8E-05 32.5 2.0 15 2-16 32-46 (194)
450 2fg5_A RAB-22B, RAS-related pr 83.4 0.56 1.9E-05 32.4 2.1 15 2-16 32-46 (192)
451 2a5j_A RAS-related protein RAB 83.4 0.53 1.8E-05 32.4 2.0 15 2-16 30-44 (191)
452 3eph_A TRNA isopentenyltransfe 83.3 0.51 1.7E-05 37.4 2.0 17 1-17 10-26 (409)
453 1x3s_A RAS-related protein RAB 83.2 0.57 1.9E-05 32.1 2.1 15 2-16 24-38 (195)
454 1zd9_A ADP-ribosylation factor 83.1 0.55 1.9E-05 32.3 2.0 15 2-16 31-45 (188)
455 1zj6_A ADP-ribosylation factor 83.1 0.58 2E-05 32.1 2.1 15 2-16 25-39 (187)
456 3cio_A ETK, tyrosine-protein k 83.1 0.52 1.8E-05 35.6 1.9 29 2-33 114-142 (299)
457 2gk6_A Regulator of nonsense t 83.0 0.62 2.1E-05 38.9 2.5 43 1-46 203-245 (624)
458 1z06_A RAS-related protein RAB 83.0 0.6 2.1E-05 32.0 2.1 15 2-16 29-43 (189)
459 4bas_A ADP-ribosylation factor 83.0 0.53 1.8E-05 32.4 1.8 15 2-16 26-40 (199)
460 2q3h_A RAS homolog gene family 83.0 0.58 2E-05 32.4 2.0 15 2-16 29-43 (201)
461 2o52_A RAS-related protein RAB 82.8 0.57 1.9E-05 32.7 1.9 15 2-16 34-48 (200)
462 2p5s_A RAS and EF-hand domain 82.8 0.58 2E-05 32.5 2.0 15 2-16 37-51 (199)
463 2qnr_A Septin-2, protein NEDD5 82.7 0.55 1.9E-05 35.5 1.9 15 2-16 27-41 (301)
464 3p32_A Probable GTPase RV1496/ 82.6 0.58 2E-05 36.2 2.1 17 1-17 87-103 (355)
465 3dz8_A RAS-related protein RAB 82.6 0.52 1.8E-05 32.4 1.7 15 2-16 32-46 (191)
466 2yv5_A YJEQ protein; hydrolase 82.6 0.58 2E-05 35.4 2.0 16 1-17 173-188 (302)
467 2atx_A Small GTP binding prote 82.6 0.64 2.2E-05 32.0 2.1 15 2-16 27-41 (194)
468 2j1l_A RHO-related GTP-binding 82.5 0.59 2E-05 33.0 1.9 15 2-16 43-57 (214)
469 2b6h_A ADP-ribosylation factor 82.4 0.55 1.9E-05 32.5 1.7 15 2-16 38-52 (192)
470 2il1_A RAB12; G-protein, GDP, 82.4 0.51 1.7E-05 32.6 1.5 15 2-16 35-49 (192)
471 2bcg_Y Protein YP2, GTP-bindin 82.4 0.61 2.1E-05 32.5 2.0 15 2-16 17-31 (206)
472 1moz_A ARL1, ADP-ribosylation 82.4 0.43 1.5E-05 32.4 1.1 15 2-16 27-41 (183)
473 3cbq_A GTP-binding protein REM 82.4 0.43 1.5E-05 33.3 1.1 14 2-15 32-45 (195)
474 2bbs_A Cystic fibrosis transme 82.4 0.55 1.9E-05 35.4 1.8 17 1-17 72-88 (290)
475 2j0v_A RAC-like GTP-binding pr 82.3 0.62 2.1E-05 32.6 2.0 15 2-16 18-32 (212)
476 3gd7_A Fusion complex of cysti 82.3 0.6 2E-05 36.8 2.0 16 1-16 55-70 (390)
477 1nij_A Hypothetical protein YJ 82.2 0.44 1.5E-05 36.3 1.3 16 1-16 12-27 (318)
478 2qu8_A Putative nucleolar GTP- 82.1 0.59 2E-05 33.4 1.8 15 2-16 38-52 (228)
479 2fv8_A H6, RHO-related GTP-bin 82.1 0.64 2.2E-05 32.5 2.0 15 2-16 34-48 (207)
480 2hup_A RAS-related protein RAB 82.0 0.64 2.2E-05 32.4 2.0 15 2-16 38-52 (201)
481 2gf0_A GTP-binding protein DI- 82.0 0.65 2.2E-05 32.0 2.0 15 2-16 17-31 (199)
482 4gzl_A RAS-related C3 botulinu 81.9 0.68 2.3E-05 32.4 2.1 15 2-16 39-53 (204)
483 2dpy_A FLII, flagellum-specifi 81.8 1.1 3.6E-05 35.9 3.4 17 1-17 165-181 (438)
484 2g3y_A GTP-binding protein GEM 81.8 0.65 2.2E-05 33.1 1.9 14 2-15 46-59 (211)
485 1pui_A ENGB, probable GTP-bind 81.8 0.31 1.1E-05 34.1 0.2 16 1-16 34-49 (210)
486 3upu_A ATP-dependent DNA helic 81.6 0.63 2.2E-05 37.3 2.0 17 1-17 53-69 (459)
487 2f7s_A C25KG, RAS-related prot 81.6 0.75 2.6E-05 32.3 2.2 15 2-16 34-48 (217)
488 3k53_A Ferrous iron transport 81.6 0.68 2.3E-05 34.2 2.1 15 2-16 12-26 (271)
489 3lxx_A GTPase IMAP family memb 81.5 0.75 2.6E-05 33.1 2.2 16 1-16 37-52 (239)
490 2gco_A H9, RHO-related GTP-bin 81.5 0.69 2.3E-05 32.2 2.0 15 2-16 34-48 (201)
491 2gks_A Bifunctional SAT/APS ki 81.5 0.62 2.1E-05 38.4 2.0 17 1-17 380-396 (546)
492 3b5x_A Lipid A export ATP-bind 81.4 1 3.5E-05 37.3 3.2 17 1-17 377-393 (582)
493 3cph_A RAS-related protein SEC 81.2 0.71 2.4E-05 32.2 2.0 15 2-16 29-43 (213)
494 2h57_A ADP-ribosylation factor 81.0 0.5 1.7E-05 32.5 1.1 15 2-16 30-44 (190)
495 1r6b_X CLPA protein; AAA+, N-t 81.0 0.65 2.2E-05 39.6 2.0 17 1-17 496-512 (758)
496 2obl_A ESCN; ATPase, hydrolase 80.9 0.71 2.4E-05 35.7 2.0 17 1-17 79-95 (347)
497 3q3j_B RHO-related GTP-binding 80.8 0.78 2.7E-05 32.4 2.1 15 2-16 36-50 (214)
498 3hdt_A Putative kinase; struct 80.8 0.63 2.2E-05 33.6 1.6 17 1-17 22-38 (223)
499 2rcn_A Probable GTPase ENGC; Y 80.6 0.77 2.6E-05 35.8 2.1 17 1-17 223-239 (358)
500 3b60_A Lipid A export ATP-bind 80.5 1.2 4.1E-05 36.9 3.4 17 1-17 377-393 (582)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=9.6e-33 Score=228.66 Aligned_cols=173 Identities=15% Similarity=0.192 Sum_probs=139.3
Q ss_pred CCCCcHHHHHHHHHc--ccccccCCCCeEEEEEeCCCC--CHHHHHHHHHHHhCCCCC----CCCCCcChHHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINN--KFLVSSTDFDCVIWIVVSKDL--QLEKIQEIVGKKVGLLDG----DSWKNKNSEEKALEIFRF 72 (180)
Q Consensus 1 mgGiGKTtLA~~~~~--~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~~~l~~~ 72 (180)
|||+||||||+++|+ + ..++.+|++++||++++.+ +...++..|+++++.... ......+.+++...+++.
T Consensus 160 ~gGvGKTtLA~~v~~~~~-~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 238 (549)
T 2a5y_B 160 RAGSGKSVIASQALSKSD-QLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNA 238 (549)
T ss_dssp STTSSHHHHHHHHHHHCS-STBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhh-HHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHH
Confidence 799999999999998 4 2577999999999999875 889999999999976411 112233567788999999
Q ss_pred hCCC-cEEEEEeCCCCcccc--cc--c---------cccccccc-ccceEeecCCChhhhHHHHHHH------------H
Q 046006 73 LSKK-KFVLLLDDKWERVDL--NK--G---------LFVCGLVE-ANKNFKVECLSDNDAWELLRQK------------L 125 (180)
Q Consensus 73 L~~k-~~LlVlDdv~~~~~l--~~--g---------~~~~~~~~-~~~~~~l~~L~~~~a~~Lf~~~------------~ 125 (180)
|+++ |+||||||||+.+++ .. | ..++..++ ...+|+|++|+.++|++||.++ .
T Consensus 239 L~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 318 (549)
T 2a5y_B 239 LIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDV 318 (549)
T ss_dssp HTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHH
T ss_pred HcCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHH
Confidence 9996 999999999998753 22 3 33444444 3367999999999999999987 5
Q ss_pred HHHHHHHcCCChHHHHHHHHHhcCCCCCCce-------------------------------------------------
Q 046006 126 AQTVAKKCVGLPLALITIGRAIACKRTPREW------------------------------------------------- 156 (180)
Q Consensus 126 ~~~i~~~c~g~PLal~~~~~~L~~~~~~~~w------------------------------------------------- 156 (180)
+.+|+++|+|+||||+++|+.|+.+ + ..|
T Consensus 319 ~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~l 396 (549)
T 2a5y_B 319 LNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFA 396 (549)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGG
T ss_pred HHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhhe
Confidence 8999999999999999999998653 1 111
Q ss_pred eecCCCcccCHHHHHHHHHhc--CCC
Q 046006 157 SLYPEDYLISKEILIYCWIDK--FHI 180 (180)
Q Consensus 157 s~fp~~~~i~~~~Li~~Wiae--g~i 180 (180)
|+||+++.|+ +++|+|+ |||
T Consensus 397 s~fp~~~~i~----i~~w~a~~~G~i 418 (549)
T 2a5y_B 397 VVMPPGVDIP----VKLWSCVIPVDI 418 (549)
T ss_dssp GSSCTTCCEE----HHHHHHHSCC--
T ss_pred eeeCCCCeee----eeeeeeecccee
Confidence 7999999999 8999999 886
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.95 E-value=4.8e-27 Score=208.52 Aligned_cols=176 Identities=22% Similarity=0.327 Sum_probs=139.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCCC--HHHHHHHHHHHhCCCCC-CCCCCcChHHHHHHHHHHhCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDLQ--LEKIQEIVGKKVGLLDG-DSWKNKNSEEKALEIFRFLSKK 76 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~k 76 (180)
|||+||||||++++++......+| ++++|+++++..+ ....+..++..+..... ......+.+++...++..+.++
T Consensus 155 ~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 234 (1249)
T 3sfz_A 155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK 234 (1249)
T ss_dssp STTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhcc
Confidence 799999999999999853334444 7888999988543 44557778888765411 1233457888999999999877
Q ss_pred --cEEEEEeCCCCcccccc---c---------ccccc-cccccceEeecC-CChhhhHHHHHHH----------HHHHHH
Q 046006 77 --KFVLLLDDKWERVDLNK---G---------LFVCG-LVEANKNFKVEC-LSDNDAWELLRQK----------LAQTVA 130 (180)
Q Consensus 77 --~~LlVlDdv~~~~~l~~---g---------~~~~~-~~~~~~~~~l~~-L~~~~a~~Lf~~~----------~~~~i~ 130 (180)
|+||||||||+..+++. | ..++. .......+++++ |++++|++||... .+++|+
T Consensus 235 ~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~ 314 (1249)
T 3sfz_A 235 HPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSII 314 (1249)
T ss_dssp SCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHH
T ss_pred CCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHH
Confidence 99999999999988776 3 33332 234557889996 9999999999987 799999
Q ss_pred HHcCCChHHHHHHHHHhcCCCCCCce------------------------------------------------eecCCC
Q 046006 131 KKCVGLPLALITIGRAIACKRTPREW------------------------------------------------SLYPED 162 (180)
Q Consensus 131 ~~c~g~PLal~~~~~~L~~~~~~~~w------------------------------------------------s~fp~~ 162 (180)
++|+|+||||+++|++|+.+. ..| ++||++
T Consensus 315 ~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~ 392 (1249)
T 3sfz_A 315 KECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKD 392 (1249)
T ss_dssp HHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTT
T ss_pred HHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCC
Confidence 999999999999999998633 122 899999
Q ss_pred cccCHHHHHHHHHhcC
Q 046006 163 YLISKEILIYCWIDKF 178 (180)
Q Consensus 163 ~~i~~~~Li~~Wiaeg 178 (180)
+.|+.+.++.+|.+++
T Consensus 393 ~~i~~~~~~~~~~~~~ 408 (1249)
T 3sfz_A 393 VKVPTKVLCVLWDLET 408 (1249)
T ss_dssp CCEEHHHHHHHHTCCH
T ss_pred CeeCHHHHHHHhCCCH
Confidence 9999999999998753
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.94 E-value=1.6e-27 Score=205.43 Aligned_cols=177 Identities=19% Similarity=0.231 Sum_probs=131.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCe-EEEEEeCCCCCHHHHHHHHHHHhCCCC---CCCC-----CCcChHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDC-VIWIVVSKDLQLEKIQEIVGKKVGLLD---GDSW-----KNKNSEEKALEIFR 71 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~---~~~~-----~~~~~~~~~~~l~~ 71 (180)
|||+||||||++++++. .++.+|+. ++|+++++.++...++..|++.++... .... ...+.+++...+++
T Consensus 158 mGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~ 236 (1221)
T 1vt4_I 158 VLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236 (1221)
T ss_dssp STTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHH
Confidence 79999999999999873 56788986 999999999998888888877543210 0000 11234556677777
Q ss_pred Hh---CCCcEEEEEeCCCCcccccc---c---------ccccccccccceEeec------CCChhhhHHHHHHH----HH
Q 046006 72 FL---SKKKFVLLLDDKWERVDLNK---G---------LFVCGLVEANKNFKVE------CLSDNDAWELLRQK----LA 126 (180)
Q Consensus 72 ~L---~~k~~LlVlDdv~~~~~l~~---g---------~~~~~~~~~~~~~~l~------~L~~~~a~~Lf~~~----~~ 126 (180)
.| .++|+||||||||+.++++. | ..++..+.....+.++ +|+.+||++||.+. ..
T Consensus 237 lL~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~~e 316 (1221)
T 1vt4_I 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316 (1221)
T ss_dssp HHHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCCTT
T ss_pred HHHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCCHH
Confidence 66 68999999999999887755 3 2222222222356777 99999999999987 11
Q ss_pred HHHHHHcCCChHHHHHHHHHhcCCC-CCCce-------------------------------eecCCCcccCHHHHHHHH
Q 046006 127 QTVAKKCVGLPLALITIGRAIACKR-TPREW-------------------------------SLYPEDYLISKEILIYCW 174 (180)
Q Consensus 127 ~~i~~~c~g~PLal~~~~~~L~~~~-~~~~w-------------------------------s~fp~~~~i~~~~Li~~W 174 (180)
....+.|+|+||||+++|+.|+.+. +.+.| |+||+++.|+.+.++.+|
T Consensus 317 eL~~eICgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW 396 (1221)
T 1vt4_I 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396 (1221)
T ss_dssp THHHHHCCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHh
Confidence 2223449999999999999998752 44455 899999999999999999
Q ss_pred HhcC
Q 046006 175 IDKF 178 (180)
Q Consensus 175 iaeg 178 (180)
+++|
T Consensus 397 ~aeG 400 (1221)
T 1vt4_I 397 FDVI 400 (1221)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9885
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.90 E-value=2.5e-23 Score=173.28 Aligned_cols=172 Identities=22% Similarity=0.335 Sum_probs=127.1
Q ss_pred CCCCcHHHHHHHHHcccccc-cCCC-CeEEEEEeCCCCCHHHHH---HHHHHHhCCCC-CCCCCCcChHHHHHHHHHHhC
Q 046006 1 MGGVGKTTLLTHINNKFLVS-STDF-DCVIWIVVSKDLQLEKIQ---EIVGKKVGLLD-GDSWKNKNSEEKALEIFRFLS 74 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~-~~~f-~~~~wv~~~~~~~~~~~~---~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~ 74 (180)
|||+||||||.+++++. .+ ..+| ++++|++++.. +...++ ..++..++... .......+.+.....++..+.
T Consensus 155 ~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 232 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILML 232 (591)
T ss_dssp CTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHc
Confidence 79999999999999984 33 5778 58999998765 333333 33445555320 112344567788888888886
Q ss_pred C--CcEEEEEeCCCCcccccc---c---------ccccccccccceEee---cCCChhhhHHHHHHH----------HHH
Q 046006 75 K--KKFVLLLDDKWERVDLNK---G---------LFVCGLVEANKNFKV---ECLSDNDAWELLRQK----------LAQ 127 (180)
Q Consensus 75 ~--k~~LlVlDdv~~~~~l~~---g---------~~~~~~~~~~~~~~l---~~L~~~~a~~Lf~~~----------~~~ 127 (180)
+ +++||||||||+...++. | ..++..+. ...+++ ++|+.+|+++||... .+.
T Consensus 233 ~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~ 311 (591)
T 1z6t_A 233 RKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAH 311 (591)
T ss_dssp HTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHH
T ss_pred cCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHH
Confidence 5 799999999999876665 2 11221211 234554 589999999999987 688
Q ss_pred HHHHHcCCChHHHHHHHHHhcCCCCCCce------------------------------------------------eec
Q 046006 128 TVAKKCVGLPLALITIGRAIACKRTPREW------------------------------------------------SLY 159 (180)
Q Consensus 128 ~i~~~c~g~PLal~~~~~~L~~~~~~~~w------------------------------------------------s~f 159 (180)
+|+++|+|+||||+.+|+.|+.+.. .| |+|
T Consensus 312 ~i~~~~~G~PLal~~~a~~l~~~~~--~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f 389 (591)
T 1z6t_A 312 SIIKECKGSPLVVSLIGALLRDFPN--RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSIL 389 (591)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSTT--CHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGC
T ss_pred HHHHHhCCCcHHHHHHHHHHhcCch--hHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHcccc
Confidence 9999999999999999999976431 11 899
Q ss_pred CCCcccCHHHHHHHHHhc
Q 046006 160 PEDYLISKEILIYCWIDK 177 (180)
Q Consensus 160 p~~~~i~~~~Li~~Wiae 177 (180)
|+++.|+.+.+..+|.++
T Consensus 390 ~~~~~i~~~~l~~l~~~~ 407 (591)
T 1z6t_A 390 QKDVKVPTKVLCILWDME 407 (591)
T ss_dssp CTTCCEEHHHHHHHHTCC
T ss_pred CCCCccCHHHHHHHhccC
Confidence 999999999999999764
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.10 E-value=5.2e-10 Score=86.74 Aligned_cols=139 Identities=15% Similarity=0.120 Sum_probs=91.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC------CCHHHHHHHHHHHhCC---------------CCCCCCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD------LQLEKIQEIVGKKVGL---------------LDGDSWKN 59 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~------~~~~~~~~~i~~~l~~---------------~~~~~~~~ 59 (180)
++|+|||+|+++++++. + .+|++.... .+...++..+.+.+.. ........
T Consensus 39 ~~G~GKT~Ll~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (350)
T 2qen_A 39 IRRVGKSSLLRAFLNER----P----GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRK 110 (350)
T ss_dssp CTTSSHHHHHHHHHHHS----S----EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGG
T ss_pred CCcCCHHHHHHHHHHHc----C----cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeecccc
Confidence 57999999999999873 1 677775433 2566677777666532 00000112
Q ss_pred cChHHHHHHHHHHhCC-CcEEEEEeCCCCcccc---------c----------c------ccc--cccc----------c
Q 046006 60 KNSEEKALEIFRFLSK-KKFVLLLDDKWERVDL---------N----------K------GLF--VCGL----------V 101 (180)
Q Consensus 60 ~~~~~~~~~l~~~L~~-k~~LlVlDdv~~~~~l---------~----------~------g~~--~~~~----------~ 101 (180)
.+..+....+.+.... ++.+|||||++....+ . . |.. .... .
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l 190 (350)
T 2qen_A 111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPL 190 (350)
T ss_dssp CCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTT
T ss_pred chHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCcc
Confidence 4556666667666643 4999999999875431 0 0 110 0010 0
Q ss_pred --cccceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006 102 --EANKNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI 147 (180)
Q Consensus 102 --~~~~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L 147 (180)
.....+.+.+|+.+|+.+++... ...++++.|+|+|+++..++..+
T Consensus 191 ~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~l~~~~~~~ 249 (350)
T 2qen_A 191 YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEY 249 (350)
T ss_dssp TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 01247899999999999999863 67889999999999999988764
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.03 E-value=3e-09 Score=84.40 Aligned_cols=142 Identities=13% Similarity=0.160 Sum_probs=94.3
Q ss_pred CCCCcHHHHHHHHHcccccc--cCCCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--C
Q 046006 1 MGGVGKTTLLTHINNKFLVS--STDFD-CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--K 75 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~--~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~ 75 (180)
++|+|||+||+.+++..... ...++ ..+|++.....+...++..++++++.. .. ....+..+....+.+.+. +
T Consensus 60 ~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~-~~~~~~~~~~~~l~~~l~~~~ 137 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYP-IQ-VRGAPALDILKALVDNLYVEN 137 (412)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCC-CC-CTTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCC-CC-CCCCCHHHHHHHHHHHHHhcC
Confidence 58999999999999875311 01222 357777767778889999999999764 11 122345666777777775 7
Q ss_pred CcEEEEEeCCCCccc--------cc---------------cc-ccc-ccc-c---------------cccceEeecCCCh
Q 046006 76 KKFVLLLDDKWERVD--------LN---------------KG-LFV-CGL-V---------------EANKNFKVECLSD 114 (180)
Q Consensus 76 k~~LlVlDdv~~~~~--------l~---------------~g-~~~-~~~-~---------------~~~~~~~l~~L~~ 114 (180)
++++|||||++.... +. .. .-+ +.. . .....+.+++|+.
T Consensus 138 ~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~ 217 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKS 217 (412)
T ss_dssp CEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCH
T ss_pred CeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCH
Confidence 799999999987421 10 10 000 000 0 0012288999999
Q ss_pred hhhHHHHHHH-------------HHHHHHHHcC------CChHHHHHHH
Q 046006 115 NDAWELLRQK-------------LAQTVAKKCV------GLPLALITIG 144 (180)
Q Consensus 115 ~~a~~Lf~~~-------------~~~~i~~~c~------g~PLal~~~~ 144 (180)
++..++|... ....|++.|+ |.|..+..+.
T Consensus 218 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 218 RELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVAL 266 (412)
T ss_dssp HHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 9999999754 5678899999 9997554443
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.98 E-value=7.4e-09 Score=80.31 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=87.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-----CCHHHHHHHHHHHhCC------------CC-----CCC--
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-----LQLEKIQEIVGKKVGL------------LD-----GDS-- 56 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l~~------------~~-----~~~-- 56 (180)
++|+|||+|++++++... . ..+|++.... .+...++..+.+.+.. .. ...
T Consensus 38 ~~G~GKT~L~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 111 (357)
T 2fna_A 38 LRRTGKSSIIKIGINELN---L---PYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNE 111 (357)
T ss_dssp STTSSHHHHHHHHHHHHT---C---CEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSS
T ss_pred CCCCCHHHHHHHHHHhcC---C---CEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceE
Confidence 479999999999998742 1 2578886542 3445555555443310 00 000
Q ss_pred C-------CCcChHHHHHHHHHHhCCCcEEEEEeCCCCccc-----c----c-------c------cccc---c------
Q 046006 57 W-------KNKNSEEKALEIFRFLSKKKFVLLLDDKWERVD-----L----N-------K------GLFV---C------ 98 (180)
Q Consensus 57 ~-------~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~~~-----l----~-------~------g~~~---~------ 98 (180)
. ...........+.+..+ ++.+|||||++.... + . . |... .
T Consensus 112 ~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~ 190 (357)
T 2fna_A 112 IKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVE 190 (357)
T ss_dssp EEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTT
T ss_pred EEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhcc
Confidence 0 12344555555554433 499999999987432 1 0 0 1110 0
Q ss_pred c---cc-cc-cceEeecCCChhhhHHHHHHH---------HHHHHHHHcCCChHHHHHHHHHhc
Q 046006 99 G---LV-EA-NKNFKVECLSDNDAWELLRQK---------LAQTVAKKCVGLPLALITIGRAIA 148 (180)
Q Consensus 99 ~---~~-~~-~~~~~l~~L~~~~a~~Lf~~~---------~~~~i~~~c~g~PLal~~~~~~L~ 148 (180)
. .. +. ...+.+.+|+.+++.+++... ....|++.|+|+|+++..++..+.
T Consensus 191 ~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 191 DPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGIPGWLTYFGFIYL 254 (357)
T ss_dssp CTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred CCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCCCHHHHHHHHHHHc
Confidence 0 01 11 257899999999999999875 237899999999999999987764
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.79 E-value=2.7e-08 Score=78.16 Aligned_cols=137 Identities=13% Similarity=0.006 Sum_probs=91.4
Q ss_pred CCCCcHHHHHHHHHcccccc---cCC--CCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC
Q 046006 1 MGGVGKTTLLTHINNKFLVS---STD--FDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS 74 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~---~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 74 (180)
++|+|||+||+.+++..... ... ....+|++..... +...++..++..+... .......+.......+.+.+.
T Consensus 53 ~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~l~~~l~ 131 (384)
T 2qby_B 53 LTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGF-SVPKHGINLGEYIDKIKNGTR 131 (384)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCS-CCCSSSSCTHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCC-CCCCCCCCHHHHHHHHHHHhc
Confidence 58999999999999874211 011 2356778776666 8888889998888322 112233445677788888888
Q ss_pred CCcEEEEEeCCCCccc-------ccc------c-------ccc------cccc--cccceEeecCCChhhhHHHHHHH--
Q 046006 75 KKKFVLLLDDKWERVD-------LNK------G-------LFV------CGLV--EANKNFKVECLSDNDAWELLRQK-- 124 (180)
Q Consensus 75 ~k~~LlVlDdv~~~~~-------l~~------g-------~~~------~~~~--~~~~~~~l~~L~~~~a~~Lf~~~-- 124 (180)
.++.+|||||++.... +.. + ... .... .....+.+++++.++..++|...
T Consensus 132 ~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 132 NIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp SSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 7767999999976421 111 1 100 0000 01138899999999999999875
Q ss_pred -----------HHHHHHHHcC---CChH
Q 046006 125 -----------LAQTVAKKCV---GLPL 138 (180)
Q Consensus 125 -----------~~~~i~~~c~---g~PL 138 (180)
..+.+++.|+ |.|.
T Consensus 212 ~~~~~~~~~~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 212 YGLIKGTYDDEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp HTSCTTSCCSHHHHHHHHHHHTTCCCHH
T ss_pred hhcccCCcCHHHHHHHHHHHHhccCCHH
Confidence 5677888887 8776
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.78 E-value=7.5e-08 Score=75.46 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=91.9
Q ss_pred CCCCcHHHHHHHHHccccccc---CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--C
Q 046006 1 MGGVGKTTLLTHINNKFLVSS---TDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--K 75 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~ 75 (180)
++|+|||+||+.+++...... ..--..+|++.....+...++..++..++.. . .....+..+....+.+.+. +
T Consensus 52 ~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~l~~~l~~~~ 129 (387)
T 2v1u_A 52 LTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVR-V-PFTGLSVGEVYERLVKRLSRLR 129 (387)
T ss_dssp CTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCC-C-CSSCCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCC-C-CCCCCCHHHHHHHHHHHHhccC
Confidence 589999999999998752110 0112466788778888899999999999754 1 1223446666777777774 5
Q ss_pred CcEEEEEeCCCCcccc--------------c----c-c---------c--------cccccccccceEeecCCChhhhHH
Q 046006 76 KKFVLLLDDKWERVDL--------------N----K-G---------L--------FVCGLVEANKNFKVECLSDNDAWE 119 (180)
Q Consensus 76 k~~LlVlDdv~~~~~l--------------~----~-g---------~--------~~~~~~~~~~~~~l~~L~~~~a~~ 119 (180)
++.+|||||++....- . . + . .+.+.+ ....+.+++++.++..+
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~ 208 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSL-GEVELVFPPYTAPQLRD 208 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTT-TSEECCBCCCCHHHHHH
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHH
Confidence 6899999999864321 0 1 0 0 000011 11468899999999999
Q ss_pred HHHHH-------------HHHHHHHHcC---CChH
Q 046006 120 LLRQK-------------LAQTVAKKCV---GLPL 138 (180)
Q Consensus 120 Lf~~~-------------~~~~i~~~c~---g~PL 138 (180)
++... ..+.+++.++ |.|-
T Consensus 209 il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 209 ILETRAEEAFNPGVLDPDVVPLCAALAAREHGDAR 243 (387)
T ss_dssp HHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHH
Confidence 99876 5677888888 9994
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.72 E-value=6.7e-08 Score=75.65 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=89.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--CCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--KKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~k~~ 78 (180)
++|+||||||+.+++........-...+|++.....+...++..++..++.. .. ....+..+....+.+.+. +++.
T Consensus 53 ~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~-~~-~~~~~~~~~~~~l~~~l~~~~~~~ 130 (386)
T 2qby_A 53 LTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVK-VP-FTGLSIAELYRRLVKAVRDYGSQV 130 (386)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCC-CC-SSSCCHHHHHHHHHHHHHTCCSCE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCC-CC-CCCCCHHHHHHHHHHHHhccCCeE
Confidence 5899999999999987531110023467777666667788888888887653 11 123345666667777664 4589
Q ss_pred EEEEeCCCCccc-------------c---cc-c---------cccccccc-------ccceEeecCCChhhhHHHHHHH-
Q 046006 79 VLLLDDKWERVD-------------L---NK-G---------LFVCGLVE-------ANKNFKVECLSDNDAWELLRQK- 124 (180)
Q Consensus 79 LlVlDdv~~~~~-------------l---~~-g---------~~~~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~- 124 (180)
+|||||++.... + .. + ........ ....+.+++++.++..+++.+.
T Consensus 131 vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 131 VIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp EEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred EEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 999999976421 1 11 1 00000110 1147899999999999999874
Q ss_pred ------------HHHHHHHHcC---CChHHH
Q 046006 125 ------------LAQTVAKKCV---GLPLAL 140 (180)
Q Consensus 125 ------------~~~~i~~~c~---g~PLal 140 (180)
....+++.++ |.|..+
T Consensus 211 ~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~ 241 (386)
T 2qby_A 211 QMAFKPGVLPDNVIKLCAALAAREHGDARRA 241 (386)
T ss_dssp HHHBCSSCSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HhhccCCCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 5566777777 988743
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.62 E-value=1.1e-06 Score=69.06 Aligned_cols=136 Identities=14% Similarity=0.136 Sum_probs=90.8
Q ss_pred CCCCcHHHHHHHHHcccccccCC-CCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC--CCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTD-FDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS--KKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~--~k~ 77 (180)
++|+|||||++.+++... .. -...++++.+...+...++..++..++.. . .....+..+....+.+.+. +++
T Consensus 52 ~~G~GKTtl~~~l~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~ 126 (389)
T 1fnn_A 52 RPGTGKTVTLRKLWELYK---DKTTARFVYINGFIYRNFTAIIGEIARSLNIP-F-PRRGLSRDEFLALLVEHLRERDLY 126 (389)
T ss_dssp CTTSSHHHHHHHHHHHHT---TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCC-C-CSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHh---hhcCeeEEEEeCccCCCHHHHHHHHHHHhCcc-C-CCCCCCHHHHHHHHHHHHhhcCCe
Confidence 479999999999998852 22 12467777777778889999999998654 1 1223345666666666664 668
Q ss_pred EEEEEeCCCCccc---------cc-------cc-------cc--cccccc-------ccceEeecCCChhhhHHHHHHH-
Q 046006 78 FVLLLDDKWERVD---------LN-------KG-------LF--VCGLVE-------ANKNFKVECLSDNDAWELLRQK- 124 (180)
Q Consensus 78 ~LlVlDdv~~~~~---------l~-------~g-------~~--~~~~~~-------~~~~~~l~~L~~~~a~~Lf~~~- 124 (180)
.+|||||++.... ++ .+ .. ...... ....+.+++++.++..+++...
T Consensus 127 ~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 127 MFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp EEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred EEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 9999999987521 10 00 00 000000 1126899999999999998776
Q ss_pred ------------HHHHHHHHc---------CCChHHHH
Q 046006 125 ------------LAQTVAKKC---------VGLPLALI 141 (180)
Q Consensus 125 ------------~~~~i~~~c---------~g~PLal~ 141 (180)
....+++.+ .|.|..+.
T Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~ 244 (389)
T 1fnn_A 207 KAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAI 244 (389)
T ss_dssp HHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHH
T ss_pred HhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence 466788888 78775443
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.55 E-value=5.9e-07 Score=65.44 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=36.9
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI 147 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L 147 (180)
..+++++++.++..+++... ....|++.|+|.|..+..+...+
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 57899999999999999876 57889999999999988776554
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.38 E-value=4.9e-06 Score=59.73 Aligned_cols=127 Identities=10% Similarity=0.056 Sum_probs=71.4
Q ss_pred CCCCcHHHHHHHHHcccccccCCCC-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFD-CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
.+|+|||+||+.+++.+. ...+. ..+.++.+.......+...+....... . ...+++.+
T Consensus 46 ~~G~GKT~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~~~~v 105 (226)
T 2chg_A 46 PPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFARTA-P-----------------IGGAPFKI 105 (226)
T ss_dssp STTSSHHHHHHHHHHHHH--GGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSC-C-----------------STTCSCEE
T ss_pred CCCCCHHHHHHHHHHHHh--ccccccceEEeccccccChHHHHHHHHHHhccc-C-----------------CCccCceE
Confidence 479999999999988742 12221 233344433333333322222221110 0 01246788
Q ss_pred EEEeCCCCccc-----ccc-------c----------ccccc-cccccceEeecCCChhhhHHHHHHH-----------H
Q 046006 80 LLLDDKWERVD-----LNK-------G----------LFVCG-LVEANKNFKVECLSDNDAWELLRQK-----------L 125 (180)
Q Consensus 80 lVlDdv~~~~~-----l~~-------g----------~~~~~-~~~~~~~~~l~~L~~~~a~~Lf~~~-----------~ 125 (180)
||+||++.... +.. + ..... .......+.+++++.++..+++.+. .
T Consensus 106 liiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 185 (226)
T 2chg_A 106 IFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG 185 (226)
T ss_dssp EEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHH
T ss_pred EEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 88998876521 100 0 00000 0011237889999999999998876 5
Q ss_pred HHHHHHHcCCChHHHHHHHHHh
Q 046006 126 AQTVAKKCVGLPLALITIGRAI 147 (180)
Q Consensus 126 ~~~i~~~c~g~PLal~~~~~~L 147 (180)
...+++.++|.|..+..+...+
T Consensus 186 ~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 186 LEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 7788999999999665444333
No 14
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.14 E-value=1.1e-05 Score=62.13 Aligned_cols=120 Identities=12% Similarity=0.078 Sum_probs=73.2
Q ss_pred CCCCcHHHHHHHHHcccccccCC--C-C-eEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh---
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTD--F-D-CVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL--- 73 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~--f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L--- 73 (180)
++|+|||++++.+++.+...... . + ..+.++.....+...++..|++++... . .......+....+.+.+
T Consensus 53 pPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~-~--~~~~~~~~~L~~~f~~~~~~ 129 (318)
T 3te6_A 53 ADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE-N--LCGDISLEALNFYITNVPKA 129 (318)
T ss_dssp CCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC-C----CCCCHHHHHHHHHHSCGG
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC-C--CCchHHHHHHHHHHHHhhhc
Confidence 48999999999999986422111 1 1 345666666778889999999999543 1 11122233333333333
Q ss_pred CCCcEEEEEeCCCCccc---------cc---cc-------------------ccccccccccceEeecCCChhhhHHHHH
Q 046006 74 SKKKFVLLLDDKWERVD---------LN---KG-------------------LFVCGLVEANKNFKVECLSDNDAWELLR 122 (180)
Q Consensus 74 ~~k~~LlVlDdv~~~~~---------l~---~g-------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~ 122 (180)
.+++++++||+++...+ |. .+ ..+.+++. ...+.+++++.+|-.+++.
T Consensus 130 ~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~ 208 (318)
T 3te6_A 130 KKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMII 208 (318)
T ss_dssp GSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHH
T ss_pred cCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHH
Confidence 46789999999987631 00 00 11111221 1468899999999999988
Q ss_pred HH
Q 046006 123 QK 124 (180)
Q Consensus 123 ~~ 124 (180)
++
T Consensus 209 ~R 210 (318)
T 3te6_A 209 TR 210 (318)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 15
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.06 E-value=2.3e-05 Score=59.75 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=32.7
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHH-HHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLA-LITIGR 145 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLa-l~~~~~ 145 (180)
..+++.+++.++..+++... ....|++.|+|.|.. +..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 47899999999999999875 567899999999954 444433
No 16
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.79 E-value=0.00025 Score=58.13 Aligned_cols=132 Identities=12% Similarity=0.033 Sum_probs=70.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
++|+|||++|+.+++.. .+ ..+.++.+...+.. .....+...... . ... .-...... .....+++.+|
T Consensus 85 ppGtGKTtla~~la~~l-----~~-~~i~in~s~~~~~~-~~~~~i~~~~~~-~-~~~-~~~~~~~~--~~~~~~~~~vl 152 (516)
T 1sxj_A 85 PPGIGKTTAAHLVAQEL-----GY-DILEQNASDVRSKT-LLNAGVKNALDN-M-SVV-GYFKHNEE--AQNLNGKHFVI 152 (516)
T ss_dssp STTSSHHHHHHHHHHHT-----TC-EEEEECTTSCCCHH-HHHHTGGGGTTB-C-CST-TTTTC------CCSSTTSEEE
T ss_pred CCCCCHHHHHHHHHHHc-----CC-CEEEEeCCCcchHH-HHHHHHHHHhcc-c-cHH-HHHhhhhh--hhhccCCCeEE
Confidence 47999999999999884 12 23444444443433 222322222111 0 000 00000000 00123578899
Q ss_pred EEeCCCCcccccc-------------c------------ccccccccccceEeecCCChhhhHHHHHHH-----------
Q 046006 81 LLDDKWERVDLNK-------------G------------LFVCGLVEANKNFKVECLSDNDAWELLRQK----------- 124 (180)
Q Consensus 81 VlDdv~~~~~l~~-------------g------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~----------- 124 (180)
++|+++....-.. + ..+.........+.+++++.++..+.+...
T Consensus 153 iIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~ 232 (516)
T 1sxj_A 153 IMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN 232 (516)
T ss_dssp EECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT
T ss_pred EEECCCccchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 9999987532111 0 001111112246889999999999888765
Q ss_pred HHHHHHHHcCC-ChHHHHHHH
Q 046006 125 LAQTVAKKCVG-LPLALITIG 144 (180)
Q Consensus 125 ~~~~i~~~c~g-~PLal~~~~ 144 (180)
....|++.++| ++-++..+.
T Consensus 233 ~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 233 VIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 67889999998 455555443
No 17
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.73 E-value=0.00019 Score=57.78 Aligned_cols=121 Identities=22% Similarity=0.142 Sum_probs=69.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
.+|+||||||+.+++........ ..+++++. ..+...+...+... .. ..+.+.+..+.-+|
T Consensus 138 p~G~GKTtLa~aia~~l~~~~~~-~~v~~v~~------~~~~~~~~~~~~~~--------~~----~~~~~~~~~~~~vL 198 (440)
T 2z4s_A 138 GVGLGKTHLLQSIGNYVVQNEPD-LRVMYITS------EKFLNDLVDSMKEG--------KL----NEFREKYRKKVDIL 198 (440)
T ss_dssp SSSSSHHHHHHHHHHHHHHHCCS-SCEEEEEH------HHHHHHHHHHHHTT--------CH----HHHHHHHTTTCSEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeH------HHHHHHHHHHHHcc--------cH----HHHHHHhcCCCCEE
Confidence 47999999999999875211001 12345543 23344444444221 11 12333344456688
Q ss_pred EEeCCCCcccc---------------ccc------------------ccccccccccceEeecCCChhhhHHHHHHH---
Q 046006 81 LLDDKWERVDL---------------NKG------------------LFVCGLVEANKNFKVECLSDNDAWELLRQK--- 124 (180)
Q Consensus 81 VlDdv~~~~~l---------------~~g------------------~~~~~~~~~~~~~~l~~L~~~~a~~Lf~~~--- 124 (180)
+|||++....- +.| ..+.+++.....+.+++++.++-.+++.+.
T Consensus 199 ~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 199 LIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp EEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred EEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 88888654320 001 111111222246789999999999998876
Q ss_pred --------HHHHHHHHcCCChHHH
Q 046006 125 --------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 125 --------~~~~i~~~c~g~PLal 140 (180)
....|++.+.|.+-.+
T Consensus 279 ~~~~i~~e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 279 EHGELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_dssp HTCCCCTTHHHHHHHHCCSCHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCCHHHH
Confidence 5677888888877544
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.69 E-value=0.00074 Score=51.52 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=36.5
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHhc
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAIA 148 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L~ 148 (180)
..+.+++++.++..+++... ....+++.|.|.|-.+..+...+.
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 47899999999999998876 678899999999988877665553
No 19
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00044 Score=54.88 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=26.6
Q ss_pred cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
+..+.++..+.++-.++|+.+ ....|++.+.|.-
T Consensus 311 D~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 311 DRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCS 354 (405)
T ss_dssp CCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCC
T ss_pred ceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCC
Confidence 356788888888888888877 5788899988753
No 20
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.58 E-value=0.00059 Score=53.02 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=33.4
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG 144 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~ 144 (180)
..+++.+++.++..+++.+. ....|++.++|.|..+..+.
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 57889999999999998865 56789999999998776554
No 21
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.49 E-value=0.0044 Score=47.61 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=29.0
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCC-hHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGL-PLALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~-PLal~~~ 143 (180)
..+.++..+.++-.++|..+ ....|++.+.|. +-.|..+
T Consensus 172 ~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 172 KRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 46778888888888888876 578889998886 4444443
No 22
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.48 E-value=0.00022 Score=54.37 Aligned_cols=43 Identities=26% Similarity=0.118 Sum_probs=33.7
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHHHHh
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIGRAI 147 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~~~L 147 (180)
..+.+.+++.++..+++... ....|++.++|.|..+..+...+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 36889999999999988865 67889999999998665444333
No 23
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.44 E-value=0.003 Score=50.84 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=28.9
Q ss_pred ceEeecCCChhhhHHHHHHH------------------HHHHHHHHcCCChHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK------------------LAQTVAKKCVGLPLALI 141 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~------------------~~~~i~~~c~g~PLal~ 141 (180)
.++.+++++.++-.+++.+. ....|++.++|.+-.+.
T Consensus 158 ~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 158 RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 47889999999999988775 46777888888776544
No 24
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.40 E-value=0.00022 Score=50.81 Aligned_cols=66 Identities=29% Similarity=0.224 Sum_probs=36.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
.+|+|||+||+.+++... .....+++++. .++...+...+.. .+.......+. +. -+|
T Consensus 62 ~~GtGKT~la~~i~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~~~~~~~----~~-~~l 119 (202)
T 2w58_A 62 SFGVGKTYLLAAIANELA---KRNVSSLIVYV------PELFRELKHSLQD--------QTMNEKLDYIK----KV-PVL 119 (202)
T ss_dssp STTSSHHHHHHHHHHHHH---TTTCCEEEEEH------HHHHHHHHHC-----------CCCHHHHHHHH----HS-SEE
T ss_pred CCCCCHHHHHHHHHHHHH---HcCCeEEEEEh------HHHHHHHHHHhcc--------chHHHHHHHhc----CC-CEE
Confidence 479999999999998853 22234556543 3444444433311 12233333332 22 399
Q ss_pred EEeCCCCc
Q 046006 81 LLDDKWER 88 (180)
Q Consensus 81 VlDdv~~~ 88 (180)
||||++..
T Consensus 120 ilDei~~~ 127 (202)
T 2w58_A 120 MLDDLGAE 127 (202)
T ss_dssp EEEEECCC
T ss_pred EEcCCCCC
Confidence 99999653
No 25
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00086 Score=53.82 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=25.1
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
..+.++..+.++-.++|..+ ....+++.+.|+-
T Consensus 345 ~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 345 RKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFN 387 (437)
T ss_dssp EEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCC
T ss_pred eeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCC
Confidence 46777777888888888776 4678888887753
No 26
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.39 E-value=0.0045 Score=45.59 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=29.3
Q ss_pred ceEeecCCChhhhHHHHHHH------------HHHHHHHHcCCChH-HHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK------------LAQTVAKKCVGLPL-ALITIG 144 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~------------~~~~i~~~c~g~PL-al~~~~ 144 (180)
..+.++..+.++-.+++... ....+++.+.|.+- .+..+.
T Consensus 170 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 170 RHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 46778899999999998876 24678888888654 554444
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.37 E-value=0.0016 Score=48.75 Aligned_cols=39 Identities=21% Similarity=0.277 Sum_probs=29.6
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCC-ChHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVG-LPLALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g-~PLal~~~ 143 (180)
..+.++.++.++..++|... ....++..+.| .|-.+..+
T Consensus 181 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 181 RIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHH
T ss_pred eEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHH
Confidence 46889999999999999887 46788888877 45444433
No 28
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0009 Score=53.96 Aligned_cols=34 Identities=6% Similarity=0.133 Sum_probs=26.0
Q ss_pred cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
+..+.++..+.++-.++|+.+ ....|++.|.|.-
T Consensus 372 D~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfS 415 (467)
T 4b4t_H 372 DRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNST 415 (467)
T ss_dssp CEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCC
T ss_pred cEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCC
Confidence 356778878888888888877 4678888888753
No 29
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.00064 Score=54.54 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=24.9
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCC
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGL 136 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~ 136 (180)
..+.++..+.++-.++|..+ ....|++.+.|+
T Consensus 345 ~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~ 386 (434)
T 4b4t_M 345 RKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEF 386 (434)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSC
T ss_pred EEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC
Confidence 56778878888888888766 467888888775
No 30
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.28 E-value=0.0015 Score=50.10 Aligned_cols=32 Identities=6% Similarity=0.172 Sum_probs=24.2
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL 138 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL 138 (180)
..+++++ +.++-.+++... ....|++.+ |.+-
T Consensus 160 ~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 160 ILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp EEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHH
T ss_pred eEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHH
Confidence 4688999 999999988876 456677777 6543
No 31
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.28 E-value=0.00018 Score=50.21 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||+||+.+++..
T Consensus 51 ~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 51 EPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998875
No 32
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.27 E-value=0.0014 Score=52.47 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=24.4
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCC
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGL 136 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~ 136 (180)
..+.++..+.++-.++|..+ ....|++.+.|+
T Consensus 346 ~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~Gf 387 (437)
T 4b4t_I 346 RKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDL 387 (437)
T ss_dssp EEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSC
T ss_pred EEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCC
Confidence 45677777888888888776 467888888775
No 33
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.25 E-value=0.001 Score=51.72 Aligned_cols=37 Identities=14% Similarity=0.056 Sum_probs=29.5
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcC-CChHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCV-GLPLALI 141 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~-g~PLal~ 141 (180)
..+.+++++.++..+++... ....|++.+. |.|-.+.
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHH
Confidence 35789999999999999866 6778888887 7776543
No 34
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.23 E-value=0.0012 Score=47.29 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=46.4
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCC---------CCCCCCcChHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLD---------GDSWKNKNSEEKALEIFR 71 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~~~~~~~~~~~l~~ 71 (180)
.+|+||||||..++. .. -..++|++.....+...+.. +.+.++... .......+..+....++.
T Consensus 28 ~~GsGKTtl~~~l~~-~~-----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (220)
T 2cvh_A 28 PYASGKTTLALQTGL-LS-----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKK 100 (220)
T ss_dssp STTSSHHHHHHHHHH-HH-----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-Hc-----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHH
Confidence 379999999999987 11 13678887766555554433 333332210 000111122334555555
Q ss_pred HhCCCcEEEEEeCCCCc
Q 046006 72 FLSKKKFVLLLDDKWER 88 (180)
Q Consensus 72 ~L~~k~~LlVlDdv~~~ 88 (180)
.+..+.-++|+|.....
T Consensus 101 l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 101 TVDSNFALVVVDSITAH 117 (220)
T ss_dssp HCCTTEEEEEEECCCCC
T ss_pred HhhcCCCEEEEcCcHHH
Confidence 55446789999997654
No 35
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.13 E-value=0.0038 Score=48.18 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=30.5
Q ss_pred ceEeecCCChhhhHHHHHHH------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~------~~~~i~~~c~g~PLal 140 (180)
..+++++++.++..+.+.+. ....+++.++|.|..+
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~l~~~s~G~~r~a 201 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAA 201 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHH
T ss_pred eeeeCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHH
Confidence 47889999999999998887 5678999999998655
No 36
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.12 E-value=0.00054 Score=49.66 Aligned_cols=40 Identities=8% Similarity=0.198 Sum_probs=32.7
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG 144 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~ 144 (180)
..+.+++++.++..+++... ....+++.++|.+-.+..+.
T Consensus 167 ~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 167 LTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp EEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 57899999999999999876 67788899999887665443
No 37
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.11 E-value=0.0014 Score=49.57 Aligned_cols=40 Identities=10% Similarity=-0.086 Sum_probs=32.0
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITIG 144 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~~ 144 (180)
..+.+.+++.++..+++... ....+++.++|.|..+....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 47889999999999988865 67788899999987654433
No 38
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.11 E-value=0.0053 Score=47.84 Aligned_cols=39 Identities=5% Similarity=-0.014 Sum_probs=28.8
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCC-ChHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVG-LPLALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g-~PLal~~~ 143 (180)
..+.++..+.++-.++|..+ ....|++.+.| .|-.|..+
T Consensus 210 ~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 210 RRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 46678888888888888876 57889999988 45444433
No 39
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.09 E-value=0.00019 Score=55.33 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=41.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEe--CCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVV--SKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~ 78 (180)
++|+|||+||.+++.. . + ..++|++. .+. +..- ..+.++....+.+.+...+
T Consensus 131 pPGsGKTtLAlqlA~~-~---G--~~VlyIs~~~eE~-------------v~~~------~~~le~~l~~i~~~l~~~~- 184 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEA-L---G--GKDKYATVRFGEP-------------LSGY------NTDFNVFVDDIARAMLQHR- 184 (331)
T ss_dssp SCSSSHHHHHHHHHHH-H---H--TTSCCEEEEBSCS-------------STTC------BCCHHHHHHHHHHHHHHCS-
T ss_pred CCCCCHHHHHHHHHHh-C---C--CCEEEEEecchhh-------------hhhh------hcCHHHHHHHHHHHHhhCC-
Confidence 5899999999999875 1 1 12445655 322 1111 1456677777777776666
Q ss_pred EEEEeCCCCc
Q 046006 79 VLLLDDKWER 88 (180)
Q Consensus 79 LlVlDdv~~~ 88 (180)
++|+|++...
T Consensus 185 LLVIDsI~aL 194 (331)
T 2vhj_A 185 VIVIDSLKNV 194 (331)
T ss_dssp EEEEECCTTT
T ss_pred EEEEeccccc
Confidence 9999999875
No 40
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.06 E-value=0.00044 Score=48.37 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=36.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVL 80 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~Ll 80 (180)
++|+||||||+.+++... ....+. ++++ +..++...+....... . ....... +. +.-+|
T Consensus 46 ~~G~GKTtL~~~i~~~~~-~~~g~~-~~~~------~~~~~~~~~~~~~~~~----~----~~~~~~~----~~-~~~ll 104 (180)
T 3ec2_A 46 SPGVGKTHLAVATLKAIY-EKKGIR-GYFF------DTKDLIFRLKHLMDEG----K----DTKFLKT----VL-NSPVL 104 (180)
T ss_dssp SSSSSHHHHHHHHHHHHH-HHSCCC-CCEE------EHHHHHHHHHHHHHHT----C----CSHHHHH----HH-TCSEE
T ss_pred CCCCCHHHHHHHHHHHHH-HHcCCe-EEEE------EHHHHHHHHHHHhcCc----h----HHHHHHH----hc-CCCEE
Confidence 479999999999998752 112222 2333 3455555555444221 0 0122222 22 45689
Q ss_pred EEeCCCC
Q 046006 81 LLDDKWE 87 (180)
Q Consensus 81 VlDdv~~ 87 (180)
||||+..
T Consensus 105 ilDE~~~ 111 (180)
T 3ec2_A 105 VLDDLGS 111 (180)
T ss_dssp EEETCSS
T ss_pred EEeCCCC
Confidence 9999974
No 41
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.95 E-value=0.0099 Score=47.73 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=27.2
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCC-hHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGL-PLALI 141 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~-PLal~ 141 (180)
..+.++..+.++-.++|..+ ....|++.+.|. +-.|.
T Consensus 294 ~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~ 342 (444)
T 2zan_A 294 KRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADIS 342 (444)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 45677788888888888776 577889999884 43443
No 42
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.94 E-value=0.0039 Score=53.68 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=25.9
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
..++++..+.++-.++|..+ ....|++.+.|.-
T Consensus 365 ~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 365 REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407 (806)
T ss_dssp EEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCC
T ss_pred eEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCC
Confidence 56788888888888888876 4778888888764
No 43
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.93 E-value=0.0092 Score=46.44 Aligned_cols=41 Identities=5% Similarity=0.048 Sum_probs=30.0
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCC-ChHHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVG-LPLALITIGR 145 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g-~PLal~~~~~ 145 (180)
..+.++..+.++..+++... ....|++.+.| .|-.|..+..
T Consensus 244 ~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 244 KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35678888888888887765 56788888888 5666665544
No 44
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.92 E-value=0.0028 Score=49.52 Aligned_cols=80 Identities=15% Similarity=0.048 Sum_probs=50.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~ 77 (180)
.+|+||||||.+++.... . .-..++|++....++.. .++.++..... .....+.++....+...++ .+.
T Consensus 69 ppGsGKSTLal~la~~~~-~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (356)
T 3hr8_A 69 QESSGKTTLALHAIAEAQ-K--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVV 140 (356)
T ss_dssp STTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCC
T ss_pred CCCCCHHHHHHHHHHHHH-h--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCC
Confidence 479999999999988742 1 11246788776666554 45556543111 1123456666666666554 556
Q ss_pred EEEEEeCCCCc
Q 046006 78 FVLLLDDKWER 88 (180)
Q Consensus 78 ~LlVlDdv~~~ 88 (180)
-++|+|.+...
T Consensus 141 dlvVIDSi~~l 151 (356)
T 3hr8_A 141 DLIVVDSVAAL 151 (356)
T ss_dssp SEEEEECTTTC
T ss_pred CeEEehHhhhh
Confidence 79999998655
No 45
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.90 E-value=0.0028 Score=46.11 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=48.6
Q ss_pred CCCCcHHHHHHHHHcccccccC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---C---CCCCcChHH---HHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSST----DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG---D---SWKNKNSEE---KAL 67 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---~---~~~~~~~~~---~~~ 67 (180)
.+|+|||||++.++.... ... .-..++|++....++...+. .+++.++.... . .....+.++ ...
T Consensus 32 ~~GsGKTtl~~~l~~~~~-~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (243)
T 1n0w_A 32 EFRTGKTQICHTLAVTCQ-LPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDHQTQLLY 109 (243)
T ss_dssp CTTSSHHHHHHHHHHHTT-SCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHh-CchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHHHHHHHH
Confidence 479999999999987521 111 13578888876655554443 34455544300 0 001122333 233
Q ss_pred HHHHHhC-CCcEEEEEeCCCCc
Q 046006 68 EIFRFLS-KKKFVLLLDDKWER 88 (180)
Q Consensus 68 ~l~~~L~-~k~~LlVlDdv~~~ 88 (180)
.+.+.+. .+.-++|+|++...
T Consensus 110 ~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 110 QASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHhcCCceEEEEeCchHH
Confidence 3555553 57889999998654
No 46
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.88 E-value=0.0055 Score=46.94 Aligned_cols=40 Identities=5% Similarity=-0.041 Sum_probs=29.0
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCC-ChHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVG-LPLALITIG 144 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g-~PLal~~~~ 144 (180)
..+.++..+.++-.++|..+ ....|++.+.| .+-.|..+.
T Consensus 177 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 177 RRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45678888889989998877 57788888887 454444433
No 47
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.86 E-value=0.0029 Score=48.68 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=51.3
Q ss_pred CCCCcHHHHHHHHHcccccccC---CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCCCcChH---HHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSST---DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG------DSWKNKNSE---EKALE 68 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~---~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~---~~~~~ 68 (180)
.+|+|||+||.+++........ .-..++|++....++..++.. +++.++.... ......+.+ +....
T Consensus 115 ~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~ 193 (324)
T 2z43_A 115 EFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193 (324)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred CCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHH
Confidence 3799999999999876311100 024678998887777666553 4555654310 001122233 34445
Q ss_pred HHHHhC--CCcEEEEEeCCCCc
Q 046006 69 IFRFLS--KKKFVLLLDDKWER 88 (180)
Q Consensus 69 l~~~L~--~k~~LlVlDdv~~~ 88 (180)
+...++ .+.-++|+|.+...
T Consensus 194 l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 194 LQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHhccCCCEEEEeCcHHH
Confidence 555553 56789999998654
No 48
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.85 E-value=0.0015 Score=45.24 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||+||+.+++..
T Consensus 51 ~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 51 DPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CGGGCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998875
No 49
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.82 E-value=0.0058 Score=47.04 Aligned_cols=81 Identities=7% Similarity=0.023 Sum_probs=51.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCcChHHH-HHHHHHH--h-
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS---WKNKNSEEK-ALEIFRF--L- 73 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~-~~~l~~~--L- 73 (180)
.+|+||||||.+++.... ....-..++|++....++.. .++.++.+ ... ..+.+.++. ...+... +
T Consensus 36 ~pGsGKTtL~Lq~~~~~~-~~g~g~~vlyId~E~s~~~~-----ra~~lGvd-~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 36 PSKSFKSNFGLTMVSSYM-RQYPDAVCLFYDSEFGITPA-----YLRSMGVD-PERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp SSSSSHHHHHHHHHHHHH-HHCTTCEEEEEESSCCCCHH-----HHHHTTCC-GGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHH-hcCCCceEEEEeccchhhHH-----HHHHhCCC-HHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 479999999999987742 11112457888877777654 26777765 211 123455555 4433332 3
Q ss_pred CCCcEEEEEeCCCCc
Q 046006 74 SKKKFVLLLDDKWER 88 (180)
Q Consensus 74 ~~k~~LlVlDdv~~~ 88 (180)
+++.-++|+|-+...
T Consensus 109 ~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 109 RGEKVVVFIDSLGNL 123 (333)
T ss_dssp TTCCEEEEEECSTTC
T ss_pred ccCceEEEEeccccc
Confidence 467899999998765
No 50
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.81 E-value=0.0071 Score=46.90 Aligned_cols=86 Identities=10% Similarity=0.085 Sum_probs=50.0
Q ss_pred CCCCcHHHHHHHHHcccccccC----CCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCCcChHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSST----DFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG---------DSWKNKNSEEKAL 67 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~~~~~~~~ 67 (180)
.+|+|||+||.+++.... ... .-..++|++....++...+.. +++.++.... .........+...
T Consensus 130 ~~GsGKTtla~~la~~~~-~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~ 207 (343)
T 1v5w_A 130 EFRTGKTQLSHTLCVTAQ-LPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTSEHQMELLD 207 (343)
T ss_dssp CTTCTHHHHHHHHHHHTT-SCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSTTHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh-cccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCHHHHHHHHH
Confidence 379999999999987621 111 234678998877777666543 4455544300 0011112223344
Q ss_pred HHHHHhC---CCcEEEEEeCCCCc
Q 046006 68 EIFRFLS---KKKFVLLLDDKWER 88 (180)
Q Consensus 68 ~l~~~L~---~k~~LlVlDdv~~~ 88 (180)
.+.+.++ .+.-++|+|.+...
T Consensus 208 ~l~~~i~~~~~~~~lvVIDsl~~l 231 (343)
T 1v5w_A 208 YVAAKFHEEAGIFKLLIIDSIMAL 231 (343)
T ss_dssp HHHHHHHHSCSSEEEEEEETSGGG
T ss_pred HHHHHHHhcCCCccEEEEechHHH
Confidence 4455553 56779999998654
No 51
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.75 E-value=0.00076 Score=51.20 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||+||+.+++..
T Consensus 44 ppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 44 GKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999985
No 52
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.74 E-value=0.029 Score=44.09 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=30.1
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITIGR 145 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~~~ 145 (180)
..+.++..+.++-.+++... ....|++.+.|..- ++..+..
T Consensus 275 ~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 275 KRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45778888999998888766 57788888888543 5655543
No 53
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.64 E-value=0.0075 Score=47.30 Aligned_cols=80 Identities=16% Similarity=0.074 Sum_probs=51.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~ 77 (180)
.+|+||||||.+++.... . .-..++|++....++.. .++.++.+... .....+.++....+....+ .+.
T Consensus 82 ~pGsGKTtlal~la~~~~-~--~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~ 153 (366)
T 1xp8_A 82 PESGGKTTLALAIVAQAQ-K--AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAI 153 (366)
T ss_dssp STTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CCCCChHHHHHHHHHHHH-H--CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCC
Confidence 379999999999987742 1 22368899887766544 24555543110 0123456677777766665 456
Q ss_pred EEEEEeCCCCc
Q 046006 78 FVLLLDDKWER 88 (180)
Q Consensus 78 ~LlVlDdv~~~ 88 (180)
-++|+|.+...
T Consensus 154 ~lVVIDsl~~l 164 (366)
T 1xp8_A 154 DVVVVDSVAAL 164 (366)
T ss_dssp SEEEEECTTTC
T ss_pred CEEEEeChHHh
Confidence 79999998654
No 54
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.62 E-value=0.0076 Score=46.92 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=49.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~ 77 (180)
.+|+||||||.+++.... ..-..++|++....++.. .++.++..... .....+.++....+....+ .+.
T Consensus 69 ~pGsGKTtLal~la~~~~---~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (349)
T 2zr9_A 69 PESSGKTTVALHAVANAQ---AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp STTSSHHHHHHHHHHHHH---HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHHHHHH---hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence 379999999999987642 112357888877666543 24556543110 0123356666666655554 457
Q ss_pred EEEEEeCCCCc
Q 046006 78 FVLLLDDKWER 88 (180)
Q Consensus 78 ~LlVlDdv~~~ 88 (180)
-++|+|.+...
T Consensus 141 ~lIVIDsl~~l 151 (349)
T 2zr9_A 141 DIIVIDSVAAL 151 (349)
T ss_dssp SEEEEECGGGC
T ss_pred CEEEEcChHhh
Confidence 79999998654
No 55
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.60 E-value=0.0043 Score=47.51 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=50.5
Q ss_pred CCCCcHHHHHHHHHccccccc---------CCC----CeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCCCcC
Q 046006 1 MGGVGKTTLLTHINNKFLVSS---------TDF----DCVIWIVVSKDLQLEKIQEIVGKKVGLLDG------DSWKNKN 61 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~---------~~f----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~ 61 (180)
.+|+|||+||.+++....... ..- ..++|++....++..++.. +++.++.+.. ......+
T Consensus 106 ~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~ 184 (322)
T 2i1q_A 106 VFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDNTFVARAYN 184 (322)
T ss_dssp STTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHTEEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcCEEEEeCCC
Confidence 379999999999986521000 111 4678888887777776654 3455654310 0011223
Q ss_pred hH---HHHHHHHHHhC--CCcEEEEEeCCCCc
Q 046006 62 SE---EKALEIFRFLS--KKKFVLLLDDKWER 88 (180)
Q Consensus 62 ~~---~~~~~l~~~L~--~k~~LlVlDdv~~~ 88 (180)
.+ +....+.+.++ .+.-++|+|.+...
T Consensus 185 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 185 SDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred HHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 33 34445555554 45679999998644
No 56
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.55 E-value=0.006 Score=46.86 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=31.2
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALIT 142 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~ 142 (180)
..+.+.+++.++..+.+.+. ....|++.++|.|-.+..
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 36789999999999888875 678899999999876543
No 57
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.54 E-value=0.00048 Score=50.37 Aligned_cols=80 Identities=15% Similarity=-0.034 Sum_probs=43.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCC-cEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKK-KFVL 80 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k-~~Ll 80 (180)
+|+||||++..++++.. . ... .++.++..... . ....+++.++.. .......+..+....+.+.+.+. .-++
T Consensus 21 mGsGKTT~ll~~~~r~~-~-~g~-kVli~~~~~d~--r-~~~~i~srlG~~-~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 21 MFAGKTAELIRRLHRLE-Y-ADV-KYLVFKPKIDT--R-SIRNIQSRTGTS-LPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp TTSCHHHHHHHHHHHHH-H-TTC-CEEEEEECCCG--G-GCSSCCCCCCCS-SCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred CCCcHHHHHHHHHHHHH-h-cCC-EEEEEEeccCc--h-HHHHHHHhcCCC-ccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 59999999999988853 1 222 23444322211 1 112334444433 11222234455555666555444 4499
Q ss_pred EEeCCCCc
Q 046006 81 LLDDKWER 88 (180)
Q Consensus 81 VlDdv~~~ 88 (180)
|+|.+...
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99998753
No 58
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.54 E-value=0.0065 Score=45.73 Aligned_cols=40 Identities=20% Similarity=0.132 Sum_probs=28.2
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChH-HHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPL-ALITIG 144 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PL-al~~~~ 144 (180)
..+.++..+.++..+++... ....+++.+.|.+- ++..+.
T Consensus 182 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35667777777877877665 57788899988775 554443
No 59
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.53 E-value=0.023 Score=43.50 Aligned_cols=39 Identities=21% Similarity=0.349 Sum_probs=31.6
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~~~ 143 (180)
..+.+++++.++..+++.+. ....+++.+.|.|-.+..+
T Consensus 177 ~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 177 MQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 57899999999999998876 5778888999998655443
No 60
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.0044 Score=45.72 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=24.5
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCC-ChHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVG-LPLALI 141 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g-~PLal~ 141 (180)
..+.++..+.++-.+++..+ ....++..+.| .+--+.
T Consensus 175 ~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 175 RQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHH
Confidence 45667777777777777765 35566777777 565444
No 61
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.50 E-value=0.0062 Score=46.22 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=25.7
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCChH
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLPL 138 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~PL 138 (180)
..+.++..+.++-.+++... ....++..+.|.|-
T Consensus 179 ~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg 222 (301)
T 3cf0_A 179 QLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSG 222 (301)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCH
T ss_pred eEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCH
Confidence 56788888999888888776 35667777777654
No 62
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.49 E-value=0.018 Score=46.83 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=29.7
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCC-hHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGL-PLALITI 143 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~-PLal~~~ 143 (180)
..+.++..+.++-.++|..+ ...++++.+.|. +-.+..+
T Consensus 365 ~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 365 REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHH
Confidence 46888999999999999887 457888888774 5545444
No 63
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.46 E-value=0.0085 Score=46.80 Aligned_cols=79 Identities=18% Similarity=0.070 Sum_probs=47.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCcChHHHHHHHHHHh-CCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS---WKNKNSEEKALEIFRFL-SKK 76 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~l~~~L-~~k 76 (180)
.+|+||||||.+++.... . .-..++|++....++... ++.++.. ... ....+.++....++... ..+
T Consensus 71 ~pGsGKTtLal~la~~~~-~--~g~~vlyid~E~s~~~~~-----a~~~g~~-~~~l~i~~~~~~e~~~~~~~~l~~~~~ 141 (356)
T 1u94_A 71 PESSGKTTLTLQVIAAAQ-R--EGKTCAFIDAEHALDPIY-----ARKLGVD-IDNLLCSQPDTGEQALEICDALARSGA 141 (356)
T ss_dssp STTSSHHHHHHHHHHHHH-H--TTCCEEEEESSCCCCHHH-----HHHTTCC-GGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHH-H--CCCeEEEEeCCCCccHHH-----HHHcCCC-hhheeeeCCCCHHHHHHHHHHHHhccC
Confidence 379999999999987742 1 223578888876666432 4555543 111 11234555555554444 345
Q ss_pred cEEEEEeCCCCc
Q 046006 77 KFVLLLDDKWER 88 (180)
Q Consensus 77 ~~LlVlDdv~~~ 88 (180)
.-++|+|.+...
T Consensus 142 ~~lVVIDsl~~l 153 (356)
T 1u94_A 142 VDVIVVDSVAAL 153 (356)
T ss_dssp CSEEEEECGGGC
T ss_pred CCEEEEcCHHHh
Confidence 669999997544
No 64
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0028 Score=50.73 Aligned_cols=17 Identities=35% Similarity=0.469 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+|||.||+++++..
T Consensus 214 PPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 214 PPGTGKTMLVKAVANST 230 (428)
T ss_dssp CTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999999984
No 65
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.30 E-value=0.0045 Score=46.79 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=17.5
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
..+.+++++.++-.+++...
T Consensus 197 ~~i~~~~~~~~~~~~il~~~ 216 (309)
T 3syl_A 197 HHIEFPDYSDEELFEIAGHM 216 (309)
T ss_dssp EEEEECCCCHHHHHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHHHH
Confidence 57889999999999998776
No 66
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.29 E-value=0.0029 Score=47.16 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=21.8
Q ss_pred ceEeecCCCh-hhhHHHHHHH------HHHHHHHHcCC
Q 046006 105 KNFKVECLSD-NDAWELLRQK------LAQTVAKKCVG 135 (180)
Q Consensus 105 ~~~~l~~L~~-~~a~~Lf~~~------~~~~i~~~c~g 135 (180)
..+.+++++. ++-.+++.+. ....+++.+.|
T Consensus 191 ~~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 191 TTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKG 228 (272)
T ss_dssp EEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTT
T ss_pred eEEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHhcC
Confidence 4678888888 5555665554 67778888877
No 67
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.16 E-value=0.024 Score=43.62 Aligned_cols=36 Identities=8% Similarity=0.068 Sum_probs=27.5
Q ss_pred ceEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLAL 140 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal 140 (180)
..+.+.+++.++..+.+.+. ....+++.++|.+--+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Confidence 36788899999888877754 5677888888877643
No 68
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.09 E-value=0.016 Score=43.45 Aligned_cols=17 Identities=35% Similarity=0.407 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||||+.++...
T Consensus 52 p~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 52 PPGCGKTLLAKAVANES 68 (274)
T ss_dssp STTSCHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHc
Confidence 48999999999999874
No 69
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.02 E-value=0.021 Score=43.71 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=28.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK 48 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 48 (180)
.||+||||||.+++.... . +. ..++|++.. .+..++...+...
T Consensus 76 ~pG~GKTtl~l~ia~~~a-~-~g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 76 RPSMGKTAFALKQAKNMS-D-ND-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CTTSSHHHHHHHHHHHHH-T-TT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-H-cC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 389999999999987742 2 22 567777654 4555555555543
No 70
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.94 E-value=0.0049 Score=41.95 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||++.+++..
T Consensus 44 ~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 44 EEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SSTTTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999999875
No 71
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.92 E-value=0.02 Score=40.99 Aligned_cols=82 Identities=20% Similarity=0.131 Sum_probs=43.2
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC--------------------CCCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS--------------------WKNK 60 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--------------------~~~~ 60 (180)
.+|+|||||++.++.... . .. ..++|++... ....+...+ ..++...... ....
T Consensus 31 ~~GsGKTtl~~~l~~~~~-~-~~-~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (235)
T 2w0m_A 31 EPGTGKTIFSLHFIAKGL-R-DG-DPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKEDQWSLVNL 104 (235)
T ss_dssp STTSSHHHHHHHHHHHHH-H-HT-CCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----CTTBCSSC
T ss_pred CCCCCHHHHHHHHHHHHH-H-CC-CeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCceeeecCC
Confidence 379999999999986642 1 11 2355655433 344444433 2443220000 0112
Q ss_pred ChHHHHHHHHHHhC-CCc--EEEEEeCCCCc
Q 046006 61 NSEEKALEIFRFLS-KKK--FVLLLDDKWER 88 (180)
Q Consensus 61 ~~~~~~~~l~~~L~-~k~--~LlVlDdv~~~ 88 (180)
+.++....+.+.+. .++ .++|+|.....
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 105 TPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp CHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred CHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 45565555555543 233 49999997543
No 72
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=95.91 E-value=0.02 Score=46.52 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=52.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC-----C-----CCCCcChH------H
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG-----D-----SWKNKNSE------E 64 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~-----~-----~~~~~~~~------~ 64 (180)
+|+|||+|+..+.++. .+.+-+.++++-+++.. ...++.+++...=...+. . ........ .
T Consensus 174 ~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~R~~~~~ 251 (498)
T 1fx0_B 174 AGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGL 251 (498)
T ss_dssp SSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHHHTTHHH
T ss_pred CCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHHHHHHHH
Confidence 6999999999998874 22455788888888766 566677777654211100 0 01111111 2
Q ss_pred HHHHHHHHhC---CCcEEEEEeCCCC
Q 046006 65 KALEIFRFLS---KKKFVLLLDDKWE 87 (180)
Q Consensus 65 ~~~~l~~~L~---~k~~LlVlDdv~~ 87 (180)
..-.+.++++ ++.+|+++||+-.
T Consensus 252 ~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 252 TALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 2334555564 5799999999864
No 73
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.77 E-value=0.014 Score=44.44 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||++|+.+++..
T Consensus 56 ~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 56 SPGTGKTTVAKALCHDV 72 (324)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 37999999999999874
No 74
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.75 E-value=0.014 Score=47.30 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=23.2
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
..+.++..+.++-.+++..+ ....+++.+.|..
T Consensus 179 ~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~s 221 (476)
T 2ce7_A 179 KKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFV 221 (476)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred eEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCc
Confidence 36677777777777787766 3556777777765
No 75
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.70 E-value=0.042 Score=43.58 Aligned_cols=87 Identities=9% Similarity=0.089 Sum_probs=46.5
Q ss_pred CCCCcHHHHHHHHHcccccc--c-CCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC------CCCCCcChH---HHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVS--S-TDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG------DSWKNKNSE---EKALE 68 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~--~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~---~~~~~ 68 (180)
.+|+|||||+..++-..... . ..-..++|++....++...+ ..+++.++.... ......+.+ +....
T Consensus 186 ~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~~~~~~l~~ 264 (400)
T 3lda_A 186 EFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDA 264 (400)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChHHHHHHHHH
Confidence 37999999999775331110 0 12346888887666555544 345666654310 001112222 22333
Q ss_pred HHHHh-CCCcEEEEEeCCCCc
Q 046006 69 IFRFL-SKKKFVLLLDDKWER 88 (180)
Q Consensus 69 l~~~L-~~k~~LlVlDdv~~~ 88 (180)
+.+.+ ..+.-++|+|.+...
T Consensus 265 ~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 265 AAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHHSCEEEEEEETGGGG
T ss_pred HHHHHHhcCCceEEecchhhh
Confidence 33333 356789999997544
No 76
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.70 E-value=0.011 Score=44.62 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||++|+.+++..
T Consensus 55 ~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 55 PTGVGKTELAKTLAATL 71 (311)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 47999999999999874
No 77
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.65 E-value=0.071 Score=43.14 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=50.3
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCC------CC---CCCCCcChHH------H
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLL------DG---DSWKNKNSEE------K 65 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~---~~~~~~~~~~------~ 65 (180)
+|+|||+|+..+.++.. +.+-+.++++-+++.. ...++.+++...=... .. .......... .
T Consensus 162 ~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r~~~~~~ 239 (482)
T 2ck3_D 162 AGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALT 239 (482)
T ss_dssp TTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHHHHHHHH
Confidence 69999999999988742 2445677888888765 4566777776542221 00 0111112111 1
Q ss_pred HHHHHHHh---CCCcEEEEEeCCCC
Q 046006 66 ALEIFRFL---SKKKFVLLLDDKWE 87 (180)
Q Consensus 66 ~~~l~~~L---~~k~~LlVlDdv~~ 87 (180)
.-.+.+++ +++.+|+++||+-.
T Consensus 240 a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 240 GLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp HHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred HHHHHHHHHHhcCCcEEEEeccHHH
Confidence 22233444 47899999999864
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.60 E-value=0.0088 Score=40.16 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||++|+.+++.
T Consensus 36 ~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 36 AGSPFETVARYFHKN 50 (143)
T ss_dssp TTCCHHHHHGGGCCT
T ss_pred CCccHHHHHHHHHHh
Confidence 799999999999887
No 79
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.59 E-value=0.0045 Score=42.83 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 11 ~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 58999999999999875
No 80
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.50 E-value=0.033 Score=43.17 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=27.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGK 47 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 47 (180)
.+|+||||||..++.... . .-..++|++. .-+..++...++.
T Consensus 54 ~pG~GKTt~al~ia~~~a-~--~g~~Vl~fSl--Ems~~ql~~Rlls 95 (338)
T 4a1f_A 54 RPSMGKTSLMMNMVLSAL-N--DDRGVAVFSL--EMSAEQLALRALS 95 (338)
T ss_dssp CTTSCHHHHHHHHHHHHH-H--TTCEEEEEES--SSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-H--cCCeEEEEeC--CCCHHHHHHHHHH
Confidence 379999999999988853 2 2235666654 3455566555543
No 81
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.50 E-value=0.05 Score=41.44 Aligned_cols=33 Identities=12% Similarity=-0.079 Sum_probs=24.0
Q ss_pred eEeecCCChhhhHHHHHHH--HHHHHHHHcCCChH
Q 046006 106 NFKVECLSDNDAWELLRQK--LAQTVAKKCVGLPL 138 (180)
Q Consensus 106 ~~~l~~L~~~~a~~Lf~~~--~~~~i~~~c~g~PL 138 (180)
.++++++++++..+.+.+. +..+-++.+.|.+-
T Consensus 133 ~~~f~~l~~~~i~~~L~~~~~i~~~~~~~~~g~~~ 167 (305)
T 2gno_A 133 VFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFK 167 (305)
T ss_dssp SEEEECCCCHHHHHHHHHHHTTHHHHCGGGGTCHH
T ss_pred eEeCCCCCHHHHHHHHHHHhCCCHHHHHHHCCCHH
Confidence 8899999999999988776 23333455666654
No 82
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.46 E-value=0.056 Score=41.00 Aligned_cols=77 Identities=13% Similarity=0.057 Sum_probs=38.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~L 79 (180)
.+|+||||++..++..+. .... ..+..+.... .....+.+....+..+.+ . ....+..++...+. .+ .+.=+
T Consensus 113 ~~GsGKTTl~~~LA~~l~-~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~-~--~~~~~~~~l~~al~-~~-~~~dl 185 (296)
T 2px0_A 113 STGAGKTTTLAKLAAISM-LEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAP-L--EVCYTKEEFQQAKE-LF-SEYDH 185 (296)
T ss_dssp STTSSHHHHHHHHHHHHH-HTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCC-C--CBCSSHHHHHHHHH-HG-GGSSE
T ss_pred CCCCCHHHHHHHHHHHHH-HhcC-CEEEEEecCcccchHHHHHHHHHHhcCCC-e--EecCCHHHHHHHHH-Hh-cCCCE
Confidence 379999999999987753 1111 1344454332 233433444444444433 1 11123344433343 23 34457
Q ss_pred EEEeC
Q 046006 80 LLLDD 84 (180)
Q Consensus 80 lVlDd 84 (180)
+++|-
T Consensus 186 vIiDT 190 (296)
T 2px0_A 186 VFVDT 190 (296)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 78883
No 83
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.42 E-value=0.04 Score=51.87 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=49.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHhC-CCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFLS-KKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L~-~k~ 77 (180)
++|+|||+||.+++..- . ..=..+.|++....++... ++.++.+... -....+.++..+.+++..+ .+.
T Consensus 1435 ppGtGKT~LA~ala~ea-~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~ 1506 (2050)
T 3cmu_A 1435 PESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1506 (2050)
T ss_dssp CTTSSHHHHHHHHHHHH-H--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHH-H--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCC
Confidence 58999999999998873 2 2223567777777666655 4555532100 1122344566666665553 678
Q ss_pred EEEEEeCCC
Q 046006 78 FVLLLDDKW 86 (180)
Q Consensus 78 ~LlVlDdv~ 86 (180)
-+||+|.+.
T Consensus 1507 ~lVVIDsi~ 1515 (2050)
T 3cmu_A 1507 DVIVVDSVA 1515 (2050)
T ss_dssp SEEEESCGG
T ss_pred CEEEEcChh
Confidence 899999985
No 84
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.42 E-value=0.098 Score=40.11 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=31.0
Q ss_pred ceEeecCCChhhhHHHHHHH------------HHHHHHHHcCCChHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK------------LAQTVAKKCVGLPLALITIG 144 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~------------~~~~i~~~c~g~PLal~~~~ 144 (180)
..+++++++.++..+.+.+. ....|++.++|.+-.+..+.
T Consensus 186 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 186 LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 57889999999999988865 35778889999886554433
No 85
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.34 E-value=0.059 Score=41.84 Aligned_cols=87 Identities=16% Similarity=0.212 Sum_probs=46.3
Q ss_pred CCCCcHHHHHHHHHcccccc--cCCCCe-EEEEEeCCCCCHHHHHHHHHHHhCCCCC---------CCCCCcChHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVS--STDFDC-VIWIVVSKDLQLEKIQEIVGKKVGLLDG---------DSWKNKNSEEKALE 68 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~--~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~---------~~~~~~~~~~~~~~ 68 (180)
.+|+|||||+.+++...... .....+ ++|++....+.... +..+++..+.... .........+....
T Consensus 139 ~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~ 217 (349)
T 1pzn_A 139 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQ 217 (349)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHH
Confidence 37999999999998763100 111123 48887655443333 3345554433200 00001112334444
Q ss_pred HHHHhC------CCcEEEEEeCCCCc
Q 046006 69 IFRFLS------KKKFVLLLDDKWER 88 (180)
Q Consensus 69 l~~~L~------~k~~LlVlDdv~~~ 88 (180)
+...+. .+.-+||+|.+-..
T Consensus 218 ~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 218 AEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHhccccCCCCEEEEeCchHh
Confidence 555553 47889999998665
No 86
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.32 E-value=0.055 Score=43.77 Aligned_cols=84 Identities=13% Similarity=0.196 Sum_probs=44.9
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHHH------HHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEEK------ALEIFR 71 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~------~~~l~~ 71 (180)
+|+|||||++.+..+.. ..+-+.++++-+++.. ...+++.++...=..... ......++... .-.+.+
T Consensus 160 sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ltiAE 237 (473)
T 1sky_E 160 AGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTGLTMAE 237 (473)
T ss_dssp SSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 79999999999988742 1233455667777654 344555555432000000 00011111111 112333
Q ss_pred Hh---CCCcEEEEEeCCCC
Q 046006 72 FL---SKKKFVLLLDDKWE 87 (180)
Q Consensus 72 ~L---~~k~~LlVlDdv~~ 87 (180)
++ ++++.|+++||+..
T Consensus 238 yFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 238 YFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHSCCEEEEEEECTHH
T ss_pred HHHHhcCCcEEEEeccHHH
Confidence 33 58899999999854
No 87
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.30 E-value=0.01 Score=46.91 Aligned_cols=83 Identities=22% Similarity=0.273 Sum_probs=41.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCC-HHHHHHHHHHHhCCCCCCCCCCcChHHH------HHHHHHHh
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQ-LEKIQEIVGKKVGLLDGDSWKNKNSEEK------ALEIFRFL 73 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~------~~~l~~~L 73 (180)
.+|+|||||++.+.+........++ ++++-+++... ..++.+.+ +..-.. .....+.... .-.+.+++
T Consensus 182 ~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~-~~~vV~---atadep~~~r~~~a~~alt~AEyf 256 (422)
T 3ice_A 182 PPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLV-KGEVVA---STFDEPASRHVQVAEMVIEKAKRL 256 (422)
T ss_dssp CSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTC-SSEEEE---ECTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHh-CeEEEE---eCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3799999999998876421112333 34566776542 33332222 100000 1111111111 11122333
Q ss_pred --CCCcEEEEEeCCCCc
Q 046006 74 --SKKKFVLLLDDKWER 88 (180)
Q Consensus 74 --~~k~~LlVlDdv~~~ 88 (180)
+++.+|+++||+...
T Consensus 257 rd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 257 VEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHTSCEEEEEEECHHHH
T ss_pred HhcCCCEEEEEeCchHH
Confidence 589999999998653
No 88
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.21 E-value=0.041 Score=39.85 Aligned_cols=82 Identities=12% Similarity=0.032 Sum_probs=44.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCC-----------C--------------
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDG-----------D-------------- 55 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----------~-------------- 55 (180)
.+|+||||||.+++.... ..-..++|++... +..++...+ ..++.... .
T Consensus 31 ~~GsGKTtl~~~~~~~~~---~~~~~v~~~~~e~--~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 104 (247)
T 2dr3_A 31 GPGTGKTIFSQQFLWNGL---KMGEPGIYVALEE--HPVQVRQNM-AQFGWDVKPYEEKGMFAMVDAFTAGIGKSKEYEK 104 (247)
T ss_dssp CTTSSHHHHHHHHHHHHH---HTTCCEEEEESSS--CHHHHHHHH-HTTTCCCHHHHHHTSEEEEECSTTTTCC--CCCS
T ss_pred CCCCCHHHHHHHHHHHHH---hcCCeEEEEEccC--CHHHHHHHH-HHcCCCHHHHhhCCcEEEEecchhhccccccccc
Confidence 479999999998877642 1223577776543 334443333 22322100 0
Q ss_pred --CCCCcChHHHHHHHHHHhC-CCcEEEEEeCCCCc
Q 046006 56 --SWKNKNSEEKALEIFRFLS-KKKFVLLLDDKWER 88 (180)
Q Consensus 56 --~~~~~~~~~~~~~l~~~L~-~k~~LlVlDdv~~~ 88 (180)
.....+..+....+.+.++ .+.-++|+|.+...
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 105 YIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp CBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred ccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 0012345555666666553 24558999997644
No 89
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.18 E-value=0.055 Score=43.22 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.5
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
.+|+||||++..++..+.
T Consensus 106 ~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 106 LQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp CTTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999988763
No 90
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.12 E-value=0.036 Score=45.23 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=23.2
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
..+.++..+.++-.++|..+ ....|+..+.|..
T Consensus 194 r~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 194 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 236 (499)
T ss_dssp CEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCC
T ss_pred eEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCC
Confidence 46778888888878888765 3566777776654
No 91
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.12 E-value=0.22 Score=35.41 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=27.8
Q ss_pred CCCCcHHHHHHHHHcccc--cccC-CCCeEEEEEeCCCCCHHHHHHHHHHHhC
Q 046006 1 MGGVGKTTLLTHINNKFL--VSST-DFDCVIWIVVSKDLQLEKIQEIVGKKVG 50 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~--~~~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 50 (180)
.+|+|||||++.++.... .-.. .-...+|+.-........ +..+++..+
T Consensus 33 ~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 33 EFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp STTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 479999999999986421 1111 134577877554433333 334444444
No 92
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.10 E-value=0.0078 Score=41.21 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 9 ~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999998774
No 93
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.09 E-value=0.14 Score=41.65 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=27.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGK 47 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 47 (180)
.+|+||||||.+++.+.. ..+=..++|++... +..++...++.
T Consensus 250 ~pG~GKT~lal~~a~~~a--~~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 250 GSGMVMSTFVRQQALQWG--TAMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp SSCHHHHHHHHHHHHHHT--TTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHH--HhcCCcEEEEeccC--CHHHHHHHHHH
Confidence 379999999999988742 12123567776543 45566665543
No 94
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.08 E-value=0.0091 Score=41.18 Aligned_cols=15 Identities=27% Similarity=0.293 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHHc
Q 046006 1 MGGVGKTTLLTHINN 15 (180)
Q Consensus 1 mgGiGKTtLA~~~~~ 15 (180)
++|+||||+|+.+..
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 589999999999987
No 95
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.03 E-value=0.11 Score=41.60 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
.+|+||||++..++..+.
T Consensus 108 ~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 108 LQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 389999999999998763
No 96
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.01 E-value=0.063 Score=40.96 Aligned_cols=84 Identities=18% Similarity=0.195 Sum_probs=42.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCCCCCcChHHH-HHHHHHHhCCCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD-LQLEKIQEIVGKKVGLLDGDSWKNKNSEEK-ALEIFRFLSKKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~l~~~L~~k~~ 78 (180)
.+|+||||++..++..+. . .. ..+..+..... ....+-+...++..+.+........+.... ...+...+..+.-
T Consensus 112 ~~GsGKTTl~~~LA~~l~-~-~g-~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~~~d 188 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFV-D-EG-KSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALARNKD 188 (306)
T ss_dssp CTTSSHHHHHHHHHHHHH-H-TT-CCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCChHHHHHHHHHHHHH-h-cC-CEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhcCCC
Confidence 379999999999998753 1 11 22444443321 112222344555555431111122233332 2345555555556
Q ss_pred EEEEeCCCC
Q 046006 79 VLLLDDKWE 87 (180)
Q Consensus 79 LlVlDdv~~ 87 (180)
++|+|..-.
T Consensus 189 vvIiDtpg~ 197 (306)
T 1vma_A 189 VVIIDTAGR 197 (306)
T ss_dssp EEEEEECCC
T ss_pred EEEEECCCc
Confidence 888897643
No 97
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.01 E-value=0.077 Score=42.49 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||++..++..+
T Consensus 105 ~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 105 VQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998775
No 98
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.97 E-value=0.024 Score=46.71 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||||+.++...
T Consensus 116 p~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 116 PPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SSSSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999998874
No 99
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.96 E-value=0.01 Score=40.56 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
++|+||||+|+.+ ..
T Consensus 9 ~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 9 MPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CTTSCHHHHHHHH-HH
T ss_pred CCCCCHHHHHHHH-HH
Confidence 5899999999999 54
No 100
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.77 E-value=0.075 Score=40.34 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=43.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhC-CCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLS-KKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~-~k~~ 78 (180)
.+|+||||++..++..+. . .. ..+.++.... .....+.+....+..+.+-.......+..+......+.++ ++-=
T Consensus 106 ~~G~GKTT~~~~la~~~~-~-~g-~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~~~D 182 (297)
T 1j8m_F 106 VQGTGKTTTAGKLAYFYK-K-KG-FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKME 182 (297)
T ss_dssp SSCSSTTHHHHHHHHHHH-H-TT-CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHHHHHH-H-CC-CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhCCCC
Confidence 379999999999987753 1 11 2344555432 2233333444455554431111122344554444444443 3333
Q ss_pred EEEEeCCCCc
Q 046006 79 VLLLDDKWER 88 (180)
Q Consensus 79 LlVlDdv~~~ 88 (180)
++++|-.-..
T Consensus 183 ~ViIDTpg~~ 192 (297)
T 1j8m_F 183 IIIVDTAGRH 192 (297)
T ss_dssp EEEEECCCSC
T ss_pred EEEEeCCCCc
Confidence 7777775433
No 101
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.72 E-value=0.15 Score=40.73 Aligned_cols=44 Identities=11% Similarity=-0.024 Sum_probs=28.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKK 48 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 48 (180)
.||+|||+||.+++.... . ..-..++|++.. .+..++...++..
T Consensus 208 ~pg~GKT~lal~ia~~~a-~-~~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 208 RPAMGKTAFALTIAQNAA-L-KEGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp CTTSCHHHHHHHHHHHHH-H-TTCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-H-hCCCeEEEEECC--CCHHHHHHHHHHH
Confidence 379999999999988742 1 112346676654 4556666666543
No 102
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.69 E-value=0.013 Score=40.77 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 9 ~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 9 IPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999875
No 103
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.69 E-value=0.013 Score=40.75 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 13 ~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 13 LMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999998874
No 104
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.66 E-value=0.014 Score=41.41 Aligned_cols=17 Identities=41% Similarity=0.450 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 33 ~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 33 YMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999999874
No 105
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.65 E-value=0.015 Score=40.61 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.++..+
T Consensus 17 ~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 17 HPGSGKSTIAEALANLP 33 (191)
T ss_dssp CTTSCHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHhcc
Confidence 58999999999998763
No 106
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.59 E-value=0.015 Score=40.55 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 11 ~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 11 VPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998875
No 107
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.58 E-value=0.081 Score=40.06 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=40.6
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCCCCCCCcChHHHHHH-HHHHhCCCcE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDGDSWKNKNSEEKALE-IFRFLSKKKF 78 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-l~~~L~~k~~ 78 (180)
.+|+||||++..++..+. . .. ..+.++...... .....+..+.+..+.+........++.++.+. +......+.=
T Consensus 106 ~~G~GKTT~~~~la~~~~-~-~~-~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D 182 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYYK-G-KG-RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARD 182 (295)
T ss_dssp CTTTTHHHHHHHHHHHHH-H-TT-CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHH-H-cC-CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCC
Confidence 379999999999998753 1 11 223444433221 11122334455555431111112344444333 3333334455
Q ss_pred EEEEeCC
Q 046006 79 VLLLDDK 85 (180)
Q Consensus 79 LlVlDdv 85 (180)
++|+|--
T Consensus 183 ~viiDtp 189 (295)
T 1ls1_A 183 LILVDTA 189 (295)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 7888876
No 108
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.57 E-value=0.015 Score=39.93 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.+...+
T Consensus 12 ~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998874
No 109
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.51 E-value=0.015 Score=40.57 Aligned_cols=17 Identities=29% Similarity=0.342 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 13 ~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 13 HPATGKTTLSQALATGL 29 (193)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999998874
No 110
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.48 E-value=0.016 Score=40.01 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 12 ~~GsGKsTla~~La~~l 28 (175)
T 1via_A 12 FMGSGKSTLARALAKDL 28 (175)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999998875
No 111
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.40 E-value=0.08 Score=42.52 Aligned_cols=17 Identities=35% Similarity=0.614 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||++..++..+
T Consensus 108 ~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 108 IQGSGKTTTVAKLARYF 124 (443)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 37999999999998775
No 112
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=94.40 E-value=0.029 Score=45.20 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=46.8
Q ss_pred CCCcHHHHHHHHHccccccc-CCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSS-TDFD-CVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEI 69 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~-~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l 69 (180)
+|+|||+|+..++++- ... ++-+ .++++-+++.. ...++.+++...=..... ......+... ..-.+
T Consensus 160 ~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~~~a~ti 238 (465)
T 3vr4_D 160 SGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATPRMALTA 238 (465)
T ss_dssp TTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6999999999998873 221 1112 55666677654 556666665443101000 0111122211 12334
Q ss_pred HHHhC---CCcEEEEEeCCCC
Q 046006 70 FRFLS---KKKFVLLLDDKWE 87 (180)
Q Consensus 70 ~~~L~---~k~~LlVlDdv~~ 87 (180)
.++++ ++.+|+++||+-.
T Consensus 239 AEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 239 AEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHhcCCeEEEEEcChHH
Confidence 55553 7899999999864
No 113
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.37 E-value=0.11 Score=48.99 Aligned_cols=80 Identities=16% Similarity=0.059 Sum_probs=51.4
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHh-CCCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFL-SKKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L-~~k~ 77 (180)
.+|+||||||.+++.... ..-..++|++.....+... ++.++.+... -....+.++....++... +.+.
T Consensus 391 ~pGsGKTtLaLqia~~~a---~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~ 462 (2050)
T 3cmu_A 391 PESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 462 (2050)
T ss_dssp CTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHH---hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 479999999999988742 2223578888776666542 5566654111 012345666666666554 3567
Q ss_pred EEEEEeCCCCc
Q 046006 78 FVLLLDDKWER 88 (180)
Q Consensus 78 ~LlVlDdv~~~ 88 (180)
-++|+|-+...
T Consensus 463 ~lIVIDSL~al 473 (2050)
T 3cmu_A 463 DVIVVDSVAAL 473 (2050)
T ss_dssp SEEEESCGGGC
T ss_pred cEEEECCHHHh
Confidence 79999998654
No 114
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.32 E-value=0.027 Score=37.73 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||++|+.+++..
T Consensus 32 ~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 32 APGTGRMTGARYLHQFG 48 (145)
T ss_dssp STTSSHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 37999999999999873
No 115
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.30 E-value=0.1 Score=45.09 Aligned_cols=63 Identities=24% Similarity=0.188 Sum_probs=37.1
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHh-CCCcEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFL-SKKKFV 79 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L-~~k~~L 79 (180)
+||+|||.||+++++... + -++.++ ..+ ++... -..+ +...+.+.+.- +..+++
T Consensus 519 PPGtGKT~lAkaiA~e~~-----~---~f~~v~----~~~----l~s~~--------vGes-e~~vr~lF~~Ar~~~P~I 573 (806)
T 3cf2_A 519 PPGCGKTLLAKAIANECQ-----A---NFISIK----GPE----LLTMW--------FGES-EANVREIFDKARQAAPCV 573 (806)
T ss_dssp STTSSHHHHHHHHHHTTT-----C---EEEECC----HHH----HHTTT--------CSSC-HHHHHHHHHHHHTTCSEE
T ss_pred CCCCCchHHHHHHHHHhC-----C---ceEEec----cch----hhccc--------cchH-HHHHHHHHHHHHHcCCce
Confidence 589999999999999842 1 222322 222 22211 1122 33444444444 567999
Q ss_pred EEEeCCCCc
Q 046006 80 LLLDDKWER 88 (180)
Q Consensus 80 lVlDdv~~~ 88 (180)
|.||+++..
T Consensus 574 ifiDEiDsl 582 (806)
T 3cf2_A 574 LFFDELDSI 582 (806)
T ss_dssp EECSCGGGC
T ss_pred eechhhhHH
Confidence 999999864
No 116
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.28 E-value=0.016 Score=40.15 Aligned_cols=17 Identities=47% Similarity=0.520 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 19 ~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 19 TPGVGKTTLGKELASKS 35 (180)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998774
No 117
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.27 E-value=0.019 Score=40.41 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 8 ~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 8 TVGAGKSTISAEISKKL 24 (205)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHhc
Confidence 57999999999999875
No 118
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.23 E-value=0.019 Score=40.64 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 26 ~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 26 VSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998874
No 119
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.09 E-value=0.099 Score=45.41 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=16.5
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
..+.+++++.++..+++...
T Consensus 325 ~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 325 QPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CCEEECCCCHHHHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHhh
Confidence 35889999999999998754
No 120
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.07 E-value=0.022 Score=39.56 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 12 ~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998764
No 121
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.01 E-value=0.023 Score=38.86 Aligned_cols=17 Identities=24% Similarity=0.423 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 15 ~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 15 FMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999998874
No 122
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.00 E-value=0.15 Score=40.95 Aligned_cols=41 Identities=12% Similarity=0.004 Sum_probs=25.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVG 46 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 46 (180)
.||+||||||.+++.+.. .. -..++|++... +..++...++
T Consensus 205 ~pG~GKTtlal~ia~~~a-~~--g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 205 RPSMGKTAFALKQAKNMS-DN--DDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp CSSSSHHHHHHHHHHHHH-HT--TCEEEEECSSS--CTTHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHH-Hc--CCEEEEEECCC--CHHHHHHHHH
Confidence 389999999999998853 22 23566665443 3334444443
No 123
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.99 E-value=0.02 Score=42.35 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||||+.++..+
T Consensus 9 ~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQET 25 (253)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHhcC
Confidence 57999999999998764
No 124
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.97 E-value=0.11 Score=48.31 Aligned_cols=80 Identities=16% Similarity=0.063 Sum_probs=51.4
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC--CCCCcChHHHHHHHHHHh-CCCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD--SWKNKNSEEKALEIFRFL-SKKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~~~L-~~k~ 77 (180)
.+|+||||||.+++.... . .-..++|++...+.+.. .++.++.+... .....+.++....++... +.+.
T Consensus 391 ~pGsGKTtLaLq~a~~~~-~--~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~ 462 (1706)
T 3cmw_A 391 PESSGKTTLTLQVIAAAQ-R--EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 462 (1706)
T ss_dssp STTSSHHHHHHHHHHHHH-H--TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHH-H--hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 379999999999988742 2 22468888877766653 25666654110 112345666666666554 3566
Q ss_pred EEEEEeCCCCc
Q 046006 78 FVLLLDDKWER 88 (180)
Q Consensus 78 ~LlVlDdv~~~ 88 (180)
-++|+|-+...
T Consensus 463 ~lVVIDSL~al 473 (1706)
T 3cmw_A 463 DVIVVDSVAAL 473 (1706)
T ss_dssp SEEEESCSTTC
T ss_pred CEEEECCHHHh
Confidence 79999998754
No 125
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.95 E-value=0.023 Score=40.21 Aligned_cols=17 Identities=35% Similarity=0.628 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||||+.+...+
T Consensus 33 ~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 33 LSGSGKSTLACALNQML 49 (200)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 57999999999998875
No 126
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.91 E-value=0.025 Score=39.43 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 11 ~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 11 GPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 127
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.90 E-value=0.025 Score=38.72 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 10 ~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 10 ARGCGMTTVGRELARAL 26 (173)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998874
No 128
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.90 E-value=0.024 Score=39.34 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 10 ~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 57999999999998864
No 129
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=93.89 E-value=0.055 Score=38.65 Aligned_cols=35 Identities=26% Similarity=0.249 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEK 40 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 40 (180)
||+||||+|..++..+. ..- .++-+......+...
T Consensus 10 GGvGKTT~a~~LA~~la---~~g-~VlliD~D~q~~~~~ 44 (209)
T 3cwq_A 10 GGVGKTTTAVHLSAYLA---LQG-ETLLIDGDPNRSATG 44 (209)
T ss_dssp TTSSHHHHHHHHHHHHH---TTS-CEEEEEECTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHH---hcC-CEEEEECCCCCCHHH
Confidence 89999999999998864 222 466666665544443
No 130
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.88 E-value=0.015 Score=40.27 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=11.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 13 ~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 13 PFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CC----CHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 58999999999998774
No 131
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.86 E-value=0.025 Score=39.99 Aligned_cols=17 Identities=24% Similarity=0.435 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 12 ~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 12 IDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999875
No 132
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.84 E-value=0.025 Score=38.90 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.+...+
T Consensus 16 ~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 16 VSGSGKSAVASEVAHQL 32 (175)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 47999999999998763
No 133
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.84 E-value=0.041 Score=38.75 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLE 39 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 39 (180)
||+||||+|..++..+.. .-..++-+......+..
T Consensus 11 gG~GKTt~a~~la~~la~---~g~~vlliD~D~~~~~~ 45 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSR---SGYNIAVVDTDPQMSLT 45 (206)
T ss_dssp TTSSHHHHHHHHHHHHHH---TTCCEEEEECCTTCHHH
T ss_pred CCccHHHHHHHHHHHHHH---CCCeEEEEECCCCCCHH
Confidence 899999999999888642 22235566665444433
No 134
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.83 E-value=0.026 Score=40.11 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.+...+
T Consensus 20 ~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 20 PSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CTTSCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 58999999999998774
No 135
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.79 E-value=0.027 Score=38.40 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 8 ~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999998874
No 136
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=93.79 E-value=0.049 Score=43.85 Aligned_cols=85 Identities=13% Similarity=0.181 Sum_probs=46.3
Q ss_pred CCCcHHHHHHHHHccccccc--------CCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcC-hHH---
Q 046006 2 GGVGKTTLLTHINNKFLVSS--------TDFD-CVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKN-SEE--- 64 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~-~~~--- 64 (180)
+|+|||+|+..++++- ... ++-+ .++++-+++.. ...++.+++...=..... ......+ ...
T Consensus 156 ~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~~~r~~~ 234 (464)
T 3gqb_B 156 SGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILT 234 (464)
T ss_dssp TTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCTHHHHHH
T ss_pred CCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCHHHHHHH
Confidence 6999999999998883 221 1222 55666677654 455566665442100000 0011111 111
Q ss_pred --HHHHHHHHhC---CCcEEEEEeCCCC
Q 046006 65 --KALEIFRFLS---KKKFVLLLDDKWE 87 (180)
Q Consensus 65 --~~~~l~~~L~---~k~~LlVlDdv~~ 87 (180)
..-.+.++++ ++.+|+++||+-.
T Consensus 235 ~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 235 PRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 1233455553 7899999999864
No 137
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.79 E-value=0.05 Score=39.45 Aligned_cols=34 Identities=29% Similarity=0.278 Sum_probs=23.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQL 38 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 38 (180)
||+||||+|..++..+.. .. ..++-|......+.
T Consensus 9 GGvGKTt~a~~LA~~la~--~g-~~VlliD~D~~~~l 42 (254)
T 3kjh_A 9 GGVGKTTVAAGLIKIMAS--DY-DKIYAVDGDPDSCL 42 (254)
T ss_dssp SSHHHHHHHHHHHHHHTT--TC-SCEEEEEECTTSCH
T ss_pred CCCCHHHHHHHHHHHHHH--CC-CeEEEEeCCCCcCh
Confidence 899999999999988642 22 34566665543443
No 138
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=93.73 E-value=0.11 Score=42.99 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCC-HHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQ-LEKIQEIV 45 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i 45 (180)
.|+|||+|+..++++ .+-+.++++-+++..+ ..++++++
T Consensus 236 ~g~GKT~L~~~ia~~-----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 236 AGSGKTVTQHQLAKW-----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CSHHHHHHHHHHHHH-----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhc-----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 689999999999876 2346788888887664 45555554
No 139
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.73 E-value=0.083 Score=45.64 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||||+.++...
T Consensus 246 p~GtGKTtLarala~~l 262 (806)
T 1ypw_A 246 PPGTGKTLIARAVANET 262 (806)
T ss_dssp CTTSSHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHc
Confidence 47999999999998874
No 140
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.71 E-value=0.028 Score=39.16 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.++..+
T Consensus 21 ~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 21 LPGSGKTTIATRLADLL 37 (186)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998875
No 141
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.68 E-value=0.028 Score=39.74 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.+...+
T Consensus 37 ~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 37 VSGSGKTTIAHGVADET 53 (200)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 47999999999998763
No 142
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.66 E-value=0.028 Score=41.66 Aligned_cols=17 Identities=29% Similarity=0.577 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 12 ~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998763
No 143
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.64 E-value=0.029 Score=39.18 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 17 ~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998774
No 144
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.64 E-value=0.029 Score=39.17 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
++|+||||+|+.+...
T Consensus 18 ~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 18 TPGTGKTSMAEMIAAE 33 (184)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5799999999999876
No 145
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.60 E-value=0.03 Score=39.55 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 28 ~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998874
No 146
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.60 E-value=0.027 Score=40.66 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 15 ~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 15 APGSGKGTVSSRITTHF 31 (227)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999998774
No 147
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.59 E-value=0.031 Score=38.93 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.+....
T Consensus 13 psGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 13 AHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 47999999999998764
No 148
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.57 E-value=0.031 Score=39.18 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 20 ~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999998874
No 149
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.56 E-value=0.028 Score=43.21 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=29.6
Q ss_pred eEeecCCChhhhHHHHHHH-----------HHHHHHHHcCCChHHHH
Q 046006 106 NFKVECLSDNDAWELLRQK-----------LAQTVAKKCVGLPLALI 141 (180)
Q Consensus 106 ~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c~g~PLal~ 141 (180)
...+++.+.++-.+++.+. .+..|++.+.|.|-.+.
T Consensus 174 ~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 174 ILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHH
Confidence 4778999999999998876 67888999999986543
No 150
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.54 E-value=0.027 Score=40.18 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 8 LPGAGKGTQGERIVEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 151
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.53 E-value=0.032 Score=38.96 Aligned_cols=16 Identities=31% Similarity=0.490 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
++|+|||||++.+...
T Consensus 10 ~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhcc
Confidence 4799999999999763
No 152
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.48 E-value=0.042 Score=40.10 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=20.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
.||+||||+|..++.... ...++ +..+.+..
T Consensus 14 kgGvGKTt~a~~la~~l~--~~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 14 APGVGKTYAMLQAAHAQL--RQGVR-VMAGVVET 44 (228)
T ss_dssp STTSSHHHHHHHHHHHHH--HTTCC-EEEEECCC
T ss_pred CCCCcHHHHHHHHHHHHH--HCCCC-EEEEEeCC
Confidence 389999999999988853 23344 34444443
No 153
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.48 E-value=0.13 Score=41.36 Aligned_cols=40 Identities=15% Similarity=0.180 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIV 45 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 45 (180)
+|+||||||..++.... .. .-..++|++... +..++...+
T Consensus 212 pG~GKTtl~l~ia~~~~-~~-~g~~Vl~~s~E~--s~~~l~~r~ 251 (454)
T 2r6a_A 212 PSVGKTAFALNIAQNVA-TK-TNENVAIFSLEM--SAQQLVMRM 251 (454)
T ss_dssp TTSCHHHHHHHHHHHHH-HH-SSCCEEEEESSS--CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-Hh-CCCcEEEEECCC--CHHHHHHHH
Confidence 79999999999988753 11 112467766443 345555544
No 154
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.44 E-value=0.033 Score=39.98 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 12 ~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 12 PPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999998875
No 155
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=93.44 E-value=0.053 Score=43.81 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=47.4
Q ss_pred CCCcHHHHHHHHHcccccccCC--CCeEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTD--FDCVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEI 69 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l 69 (180)
+|+|||+|+..++++. ...+. =+.++++-+++.. ...++.+++...=..... ......+... ..-.+
T Consensus 161 ~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~~~a~ti 239 (469)
T 2c61_A 161 SGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTPRMALTA 239 (469)
T ss_dssp TTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6999999999999883 22111 1356677677654 456667666653111100 0011111111 22334
Q ss_pred HHHhC---CCcEEEEEeCCCC
Q 046006 70 FRFLS---KKKFVLLLDDKWE 87 (180)
Q Consensus 70 ~~~L~---~k~~LlVlDdv~~ 87 (180)
.++++ ++.+|+++||+..
T Consensus 240 AEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 240 AEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHhcCCeEEEEEeCHHH
Confidence 44543 6899999999643
No 156
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.41 E-value=0.029 Score=40.03 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 157
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.41 E-value=0.027 Score=40.49 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 13 ~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 13 APASGKGTQCELIKTKY 29 (222)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998875
No 158
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.38 E-value=0.026 Score=40.23 Aligned_cols=83 Identities=18% Similarity=0.103 Sum_probs=40.3
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC---CCCHHHHHHHHHHHhC-CCCCCCCCCc-------ChHHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK---DLQLEKIQEIVGKKVG-LLDGDSWKNK-------NSEEKALEIF 70 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l~-~~~~~~~~~~-------~~~~~~~~l~ 70 (180)
.|.||||+|..++-+. ....+ .+.++.... ......++..+.-.+. ....-..... .........+
T Consensus 37 ~GkGKTTaA~GlalRA--~g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l~~a~ 113 (196)
T 1g5t_A 37 NGKGKTTAAFGTAARA--VGHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHGK 113 (196)
T ss_dssp SSSCHHHHHHHHHHHH--HHTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HHCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHHHHHH
Confidence 5899999999988773 22223 345554332 2333344444310000 0000001111 1223345556
Q ss_pred HHhCCC-cEEEEEeCCCC
Q 046006 71 RFLSKK-KFVLLLDDKWE 87 (180)
Q Consensus 71 ~~L~~k-~~LlVlDdv~~ 87 (180)
+.+.+. -=|||||++..
T Consensus 114 ~~l~~~~yDlvILDEi~~ 131 (196)
T 1g5t_A 114 RMLADPLLDMVVLDELTY 131 (196)
T ss_dssp HHTTCTTCSEEEEETHHH
T ss_pred HHHhcCCCCEEEEeCCCc
Confidence 666544 45999999744
No 159
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.38 E-value=0.034 Score=38.73 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 8 ~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998865
No 160
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.38 E-value=0.032 Score=41.18 Aligned_cols=34 Identities=29% Similarity=0.224 Sum_probs=24.3
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCChH
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLPL 138 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~PL 138 (180)
..+.++..+.++-.+++... ....+++.+.|.|-
T Consensus 176 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g 219 (268)
T 2r62_A 176 RQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAG 219 (268)
T ss_dssp CCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCH
T ss_pred eEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCH
Confidence 45778888888888888776 24556666777654
No 161
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.35 E-value=0.037 Score=38.93 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.+...+
T Consensus 12 ~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 12 LDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CTTSSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998875
No 162
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.34 E-value=0.077 Score=42.02 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKD 35 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~ 35 (180)
+|+|||+|+..+++........+. ++++-+++.
T Consensus 184 ~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 184 PKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp TTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred CCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 699999999999887421112233 245556653
No 163
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.31 E-value=0.025 Score=42.67 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 41 ~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CTTSCTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998764
No 164
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=93.31 E-value=0.14 Score=41.71 Aligned_cols=81 Identities=14% Similarity=0.217 Sum_probs=44.5
Q ss_pred CCCcHHHHHH-HHHcccccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------HHHHH
Q 046006 2 GGVGKTTLLT-HINNKFLVSSTDFDC-VIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------KALEI 69 (180)
Q Consensus 2 gGiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~~~~l 69 (180)
.|+|||+||. .+.++ .+-+. ++++-+++.. ...++.+.+.+.=..... ......+... ..-.+
T Consensus 171 ~g~GKT~l~l~~I~n~-----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~ti 245 (513)
T 3oaa_A 171 RQTGKTALAIDAIINQ-----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGCAM 245 (513)
T ss_dssp SSSSHHHHHHHHHHTT-----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHhh-----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHHHH
Confidence 5999999974 56665 23343 5678888765 455666665443111100 0011111111 11223
Q ss_pred HHHh--CCCcEEEEEeCCCC
Q 046006 70 FRFL--SKKKFVLLLDDKWE 87 (180)
Q Consensus 70 ~~~L--~~k~~LlVlDdv~~ 87 (180)
-+++ +++..|+++||+..
T Consensus 246 AEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 246 GEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHhcCCCEEEEecChHH
Confidence 3333 58999999999864
No 165
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.30 E-value=0.035 Score=40.72 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=23.7
Q ss_pred cceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 104 NKNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 104 ~~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
...+.++..+.++-.+++... ....+++.+.|.-
T Consensus 178 ~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 178 DRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 221 (254)
T ss_dssp CEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred CeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCC
Confidence 346778888888878887765 3556777777653
No 166
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.30 E-value=0.12 Score=42.17 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=45.0
Q ss_pred CCCcHHHHHH-HHHcccccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCC---CCCCCCcChHH------HHHHH
Q 046006 2 GGVGKTTLLT-HINNKFLVSSTDFDC-VIWIVVSKDL-QLEKIQEIVGKKVGLLD---GDSWKNKNSEE------KALEI 69 (180)
Q Consensus 2 gGiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~------~~~~l 69 (180)
+|+|||+||. .+.++ . .-+. ++++-+++.. ...++.+.+...=.... .......+... ..-.+
T Consensus 184 ~g~GKT~Lal~~I~~~-~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~ti 258 (515)
T 2r9v_A 184 RQTGKTAIAIDTIINQ-K----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAGCAM 258 (515)
T ss_dssp TTSSHHHHHHHHHHTT-T----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHh-h----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6999999965 66666 2 3454 4677788765 45566666654211100 00011111111 12233
Q ss_pred HHHh--CCCcEEEEEeCCCC
Q 046006 70 FRFL--SKKKFVLLLDDKWE 87 (180)
Q Consensus 70 ~~~L--~~k~~LlVlDdv~~ 87 (180)
.+++ +++.+|+++||+..
T Consensus 259 AEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 259 GEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHcCCcEEEEeccHHH
Confidence 4444 57899999999864
No 167
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.29 E-value=0.032 Score=39.37 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 23 ~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998774
No 168
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.25 E-value=0.24 Score=40.37 Aligned_cols=81 Identities=12% Similarity=0.233 Sum_probs=43.2
Q ss_pred CCCcHHHHHH-HHHcccccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCC-------CCCCCCCCcC--hHHHHHHH
Q 046006 2 GGVGKTTLLT-HINNKFLVSSTDFDC-VIWIVVSKDL-QLEKIQEIVGKKVGL-------LDGDSWKNKN--SEEKALEI 69 (180)
Q Consensus 2 gGiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~--~~~~~~~l 69 (180)
+|+|||+||. .+.++ . .-+. ++++-+++.. ...++.+.+...=.. .....+.... .....-.+
T Consensus 172 ~g~GKT~Lal~~I~~~-~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a~ti 246 (507)
T 1fx0_A 172 RQTGKTAVATDTILNQ-Q----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAPYTGAAL 246 (507)
T ss_dssp SSSSHHHHHHHHHHTC-C----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHh-h----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 6999999965 66666 2 2453 5677777755 445555555432110 0000111111 11122233
Q ss_pred HHHh--CCCcEEEEEeCCCC
Q 046006 70 FRFL--SKKKFVLLLDDKWE 87 (180)
Q Consensus 70 ~~~L--~~k~~LlVlDdv~~ 87 (180)
.+++ +++.+|+++||+..
T Consensus 247 AEyfrd~G~dVLli~Dsltr 266 (507)
T 1fx0_A 247 AEYFMYRERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHTTCEEEEEEECHHH
T ss_pred HHHHHHcCCcEEEEEecHHH
Confidence 3333 58999999999754
No 169
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.24 E-value=0.21 Score=42.66 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=15.9
Q ss_pred eEeecCCChhhhHHHHHHH
Q 046006 106 NFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 106 ~~~l~~L~~~~a~~Lf~~~ 124 (180)
.+.+++.+.++..+++...
T Consensus 343 ~i~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 343 KIDITEPSIEETVQIINGL 361 (758)
T ss_dssp EEECCCCCHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHH
Confidence 6889999999998888764
No 170
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.21 E-value=0.037 Score=38.42 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 14 ~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 14 GPGSGKGTQCANIVRDF 30 (194)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998874
No 171
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.15 E-value=0.038 Score=39.14 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=18.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCe
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDC 26 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~ 26 (180)
++|+||||+|+.+...+. ..+++.
T Consensus 18 ~~GsGKST~~~~L~~~l~--~~~~~~ 41 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEYLK--NNNVEV 41 (212)
T ss_dssp STTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred CCCCCHHHHHHHHHHHHH--HcCCcE
Confidence 479999999999988753 134555
No 172
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.12 E-value=0.032 Score=40.01 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 13 ~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 13 APGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998875
No 173
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.04 E-value=0.04 Score=38.80 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.+...+
T Consensus 14 ~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 14 PSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp STTSCHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 47999999999998774
No 174
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.01 E-value=0.041 Score=38.42 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 8 ~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 8 IDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998875
No 175
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.96 E-value=0.043 Score=38.72 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHHc
Q 046006 1 MGGVGKTTLLTHINN 15 (180)
Q Consensus 1 mgGiGKTtLA~~~~~ 15 (180)
++|+||||+++.+..
T Consensus 9 ~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE 23 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 479999999999987
No 176
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.91 E-value=0.046 Score=38.50 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.+....
T Consensus 15 p~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 15 PSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 47999999999998753
No 177
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.90 E-value=0.043 Score=38.88 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 17 ~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999875
No 178
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.88 E-value=0.044 Score=39.15 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 8 ~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 8 APVAGKGTQAQFIMEKY 24 (214)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998874
No 179
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.84 E-value=0.037 Score=40.13 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 24 ~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998875
No 180
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.80 E-value=0.049 Score=38.83 Aligned_cols=17 Identities=29% Similarity=0.303 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.+...+
T Consensus 16 psGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 16 PSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CTTSCHHHHHHHHHHST
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 47999999999998775
No 181
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.78 E-value=0.048 Score=39.88 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.++..+
T Consensus 35 ~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999553
No 182
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.77 E-value=0.047 Score=39.13 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 13 ~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 13 PSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 183
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=92.76 E-value=0.094 Score=40.15 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 23 GGvGKTTvA~~LA~~lA 39 (324)
T 3zq6_A 23 GGVGKTTISAATALWMA 39 (324)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHH
Confidence 89999999999887753
No 184
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.73 E-value=0.044 Score=38.71 Aligned_cols=17 Identities=35% Similarity=0.643 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.+..+.
T Consensus 9 PSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 9 PSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 58999999999998764
No 185
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.67 E-value=0.053 Score=37.89 Aligned_cols=17 Identities=47% Similarity=0.688 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||++.++..+
T Consensus 8 ~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 8 EPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998764
No 186
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.65 E-value=0.05 Score=39.24 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 8 ~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998874
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.64 E-value=0.052 Score=38.40 Aligned_cols=15 Identities=33% Similarity=0.364 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHHc
Q 046006 1 MGGVGKTTLLTHINN 15 (180)
Q Consensus 1 mgGiGKTtLA~~~~~ 15 (180)
++|+||||+++.+..
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999976
No 188
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.63 E-value=0.045 Score=37.76 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.2
Q ss_pred CCCCcHHHHHHHHHc
Q 046006 1 MGGVGKTTLLTHINN 15 (180)
Q Consensus 1 mgGiGKTtLA~~~~~ 15 (180)
++|+|||||++.++.
T Consensus 17 ~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 17 SSGSGKSTFAKKHFK 31 (171)
T ss_dssp CTTSCHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHcc
Confidence 479999999997543
No 189
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.59 E-value=0.2 Score=40.79 Aligned_cols=81 Identities=16% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCcHHHHHH-HHHcccccccCCCCe-EEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHHH------HHHH
Q 046006 2 GGVGKTTLLT-HINNKFLVSSTDFDC-VIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEEK------ALEI 69 (180)
Q Consensus 2 gGiGKTtLA~-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~------~~~l 69 (180)
+|+|||+||. .+.++ . .-+. ++++-+++.. ...++.+.+...=..... ......+.... .-.+
T Consensus 171 ~g~GKT~Lal~~I~~~-~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~ti 245 (502)
T 2qe7_A 171 RQTGKTTIAIDTIINQ-K----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAGCAM 245 (502)
T ss_dssp SSSCHHHHHHHHHHGG-G----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHh-h----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 6999999965 66666 2 3454 4677788765 455666666543221100 01111111111 1234
Q ss_pred HHHh--CCCcEEEEEeCCCC
Q 046006 70 FRFL--SKKKFVLLLDDKWE 87 (180)
Q Consensus 70 ~~~L--~~k~~LlVlDdv~~ 87 (180)
.+++ +++.+|+++||+..
T Consensus 246 AEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 246 GEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHcCCcEEEEEecHHH
Confidence 4444 57899999999864
No 190
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=92.58 E-value=0.089 Score=38.77 Aligned_cols=29 Identities=17% Similarity=0.401 Sum_probs=20.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS 33 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 33 (180)
||+||||+|..++..+.. .. ..++-|...
T Consensus 10 GGvGKTT~a~nLA~~la~--~G-~~VlliD~D 38 (269)
T 1cp2_A 10 GGIGKSTTTQNLTSGLHA--MG-KTIMVVGCD 38 (269)
T ss_dssp TTSSHHHHHHHHHHHHHT--TT-CCEEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHH--CC-CcEEEEcCC
Confidence 899999999999888641 22 235555543
No 191
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.53 E-value=0.054 Score=37.41 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.+...+
T Consensus 13 ~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 13 LSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998864
No 192
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.53 E-value=0.11 Score=40.15 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=14.9
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 25 GGvGKTt~a~~lA~~la 41 (334)
T 3iqw_A 25 GGVGKTTTSCSLAIQLA 41 (334)
T ss_dssp TTSSHHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHH
Confidence 89999999999887753
No 193
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.50 E-value=0.052 Score=40.43 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=23.5
Q ss_pred ceEeecCCChhhhHHHHHHH----------HHHHHHHHcCCCh
Q 046006 105 KNFKVECLSDNDAWELLRQK----------LAQTVAKKCVGLP 137 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~----------~~~~i~~~c~g~P 137 (180)
..+.++..+.++-.+++..+ ....++..+.|..
T Consensus 203 ~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 203 RQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFV 245 (278)
T ss_dssp CEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCC
T ss_pred eEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCC
Confidence 46778888888888887765 3556777777654
No 194
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.50 E-value=0.044 Score=38.99 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||++.+...+
T Consensus 30 ~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 30 APGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CTTSCTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998775
No 195
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.45 E-value=0.045 Score=40.11 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 37 ~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 37 APGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998764
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.42 E-value=0.053 Score=39.76 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.||+||||++..++..+
T Consensus 22 kgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 22 TAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 38999999999998764
No 197
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.38 E-value=0.032 Score=41.10 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 40 ~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CGGGTTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999998874
No 198
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=92.36 E-value=0.055 Score=40.54 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||++|+.+++..
T Consensus 58 ~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 58 PTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999874
No 199
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.35 E-value=0.057 Score=38.49 Aligned_cols=17 Identities=24% Similarity=0.552 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 33 ~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQL 49 (211)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998875
No 200
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.35 E-value=0.059 Score=38.15 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 29 ~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 29 VTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp STTSSHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999998764
No 201
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.23 E-value=0.064 Score=37.60 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
++|+||||+|+.+...
T Consensus 16 ~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 16 NIGSGKSTVAALLRSW 31 (203)
T ss_dssp CTTSCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHC
Confidence 4799999999999765
No 202
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.21 E-value=0.059 Score=40.48 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
++|+||||+|+.+...
T Consensus 10 ~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 10 CPGSGKSTWAREFIAK 25 (301)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 5899999999999874
No 203
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.16 E-value=0.46 Score=36.51 Aligned_cols=48 Identities=23% Similarity=0.330 Sum_probs=27.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHHHHHHHHHhCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKIQEIVGKKVGL 51 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 51 (180)
++|+||||+++.++..+. . ... .+.+..... .....+.+....+.++.
T Consensus 137 ~nGaGKTTll~~Lag~l~-~-~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 137 FNGSGKTTTIAKLANWLK-N-HGF-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CTTSSHHHHHHHHHHHHH-H-TTC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHH-h-cCC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 479999999999988753 1 222 233333322 23444555556666664
No 204
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.15 E-value=0.065 Score=37.40 Aligned_cols=17 Identities=35% Similarity=0.643 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.+...+
T Consensus 9 psGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 9 PSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp SSSSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 47999999999998664
No 205
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.94 E-value=0.058 Score=39.05 Aligned_cols=41 Identities=15% Similarity=0.126 Sum_probs=24.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIV 45 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 45 (180)
.||+|||+||.+++.+.. . +.-..+++++.. .+..++...+
T Consensus 38 ~pG~GKT~l~l~~~~~~~-~-~~~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 38 GTGTGKTTFAAQFIYKGA-E-EYGEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp CTTSSHHHHHHHHHHHHH-H-HHCCCEEEEESS--SCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-H-hcCCCceeeccc--CCHHHHHHHH
Confidence 389999999999765421 1 222345666544 3445554444
No 206
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.90 E-value=0.32 Score=45.35 Aligned_cols=79 Identities=16% Similarity=0.071 Sum_probs=55.0
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCC---CCcChHHHHHHHHHHhC-CC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSW---KNKNSEEKALEIFRFLS-KK 76 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~~~l~~~L~-~k 76 (180)
+.|+||||||.++...-. ..=...+|+......+..- ++.++.+ .... .+.+.++....+...++ +.
T Consensus 1439 ~~~sGkttl~~~~~a~~~---~~g~~~~~i~~e~~~~~~~-----~~~~Gv~-~~~l~~~~p~~~e~~l~~~~~~~~s~~ 1509 (1706)
T 3cmw_A 1439 PESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY-----ARKLGVD-IDNLLCSQPDTGEQALEICDALARSGA 1509 (1706)
T ss_dssp STTSSHHHHHHHHHHHHH---HTTCCEEEECTTSCCCHHH-----HHHTTCC-GGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHH---hcCCeEEEEecCCCCCHHH-----HHHcCCC-HHHeEEeCCCcHHHHHHHHHHHHHcCC
Confidence 368999999999987622 3345678888777666654 7788765 2221 34555777777777775 56
Q ss_pred cEEEEEeCCCCc
Q 046006 77 KFVLLLDDKWER 88 (180)
Q Consensus 77 ~~LlVlDdv~~~ 88 (180)
.-++|+|-|...
T Consensus 1510 ~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1510 VDVIVVDSVAAL 1521 (1706)
T ss_dssp CSEEEESCSTTC
T ss_pred CCEEEEccHHhC
Confidence 779999998664
No 207
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.90 E-value=0.071 Score=37.78 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||++.+...+
T Consensus 14 ~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 14 GTASGKTTLAQALARTL 30 (211)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 36999999999998864
No 208
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.87 E-value=0.067 Score=39.47 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLE 39 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 39 (180)
||+||||+|..++..+. + . ..++-|......+..
T Consensus 37 GGvGKTT~a~~LA~~la--~-g-~~VlliD~D~~~~~~ 70 (267)
T 3k9g_A 37 GGVGKSTSAIILATLLS--K-N-NKVLLIDMDTQASIT 70 (267)
T ss_dssp SSSCHHHHHHHHHHHHT--T-T-SCEEEEEECTTCHHH
T ss_pred CCchHHHHHHHHHHHHH--C-C-CCEEEEECCCCCCHH
Confidence 89999999999998863 2 2 345666655444333
No 209
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.84 E-value=0.035 Score=39.40 Aligned_cols=16 Identities=38% Similarity=0.748 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
+|+||||+|+.+...+
T Consensus 9 ~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 9 DGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999998775
No 210
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=91.79 E-value=0.07 Score=38.64 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=20.4
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS 33 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 33 (180)
||+||||+|..++..+.. .+=..++.|...
T Consensus 14 GGvGKTt~a~~LA~~la~--~~g~~VlliD~D 43 (245)
T 3ea0_A 14 GGDGGSCIAANFAFALSQ--EPDIHVLAVDIS 43 (245)
T ss_dssp TTSSHHHHHHHHHHHHTT--STTCCEEEEECC
T ss_pred CCcchHHHHHHHHHHHHh--CcCCCEEEEECC
Confidence 899999999999888642 102235556544
No 211
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.76 E-value=0.084 Score=38.90 Aligned_cols=17 Identities=18% Similarity=0.265 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||++|+.+++..
T Consensus 37 ~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 37 ERGTGKELIASRLHYLS 53 (265)
T ss_dssp CTTSCHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHHHhc
Confidence 37999999999999874
No 212
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=91.71 E-value=0.13 Score=37.54 Aligned_cols=30 Identities=30% Similarity=0.271 Sum_probs=20.7
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
||+||||+|..++..+.. ... .++-|....
T Consensus 12 gGvGKTt~a~~LA~~la~--~g~-~VlliD~D~ 41 (260)
T 3q9l_A 12 GGVGKTTSSAAIATGLAQ--KGK-KTVVIDFAI 41 (260)
T ss_dssp TTSSHHHHHHHHHHHHHH--TTC-CEEEEECCC
T ss_pred CCCcHHHHHHHHHHHHHh--CCC-cEEEEECCC
Confidence 899999999999888642 222 355565543
No 213
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.68 E-value=0.18 Score=35.75 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=39.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCC---CCCcChHHHHHHHHHHhCCCcE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDS---WKNKNSEEKALEIFRFLSKKKF 78 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~~l~~~L~~k~~ 78 (180)
-|+||||.++.+++.+.. ...+ ++...-.......+.++.++..-... ... .-..+-.+....+...|....
T Consensus 9 DGsGKsTq~~~L~~~L~~--~g~~-v~~treP~~t~~~~~ir~~l~~~~~~-~~~~~ll~~a~r~~~~~~I~~~L~~g~- 83 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQYLEK--RGKK-VILKREPGGTETGEKIRKILLEEEVT-PKAELFLFLASRNLLVTEIKQYLSEGY- 83 (197)
T ss_dssp TTSSHHHHHHHHHHHHHH--TTCC-EEEEESSCSSHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred CCCCHHHHHHHHHHHHHH--CCCc-EEEEECCCCCcHHHHHHHHhhcccCC-hHHHHHHHHHHHHHHHHHHHHHHHCCC-
Confidence 599999999999988631 2223 33333222333444444444332111 000 000112233455566665554
Q ss_pred EEEEeCCCC
Q 046006 79 VLLLDDKWE 87 (180)
Q Consensus 79 LlVlDdv~~ 87 (180)
.+|.|--..
T Consensus 84 ~Vi~DRy~~ 92 (197)
T 3hjn_A 84 AVLLDRYTD 92 (197)
T ss_dssp EEEEESCHH
T ss_pred eEEecccch
Confidence 466676443
No 214
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.68 E-value=0.063 Score=38.50 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+||||.|+.++..+
T Consensus 8 pPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 8 PPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999885
No 215
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.65 E-value=0.12 Score=38.99 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS 33 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 33 (180)
||+||||+|..++..+.. .. ..++-|...
T Consensus 50 GGvGKTT~a~nLA~~La~--~G-~~VlliD~D 78 (307)
T 3end_A 50 GGIGKSTTSSNLSAAFSI--LG-KRVLQIGCD 78 (307)
T ss_dssp TTSSHHHHHHHHHHHHHH--TT-CCEEEEEES
T ss_pred CCccHHHHHHHHHHHHHH--CC-CeEEEEeCC
Confidence 899999999999887642 12 235555544
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.64 E-value=0.63 Score=37.99 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||++..++..+
T Consensus 109 ~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 109 LQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999998765
No 217
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.64 E-value=0.074 Score=41.24 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||++|+.+++..
T Consensus 59 ppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 59 PTGSGKTLLAETLARLL 75 (363)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 48999999999999874
No 218
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.60 E-value=0.074 Score=39.79 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=20.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS 33 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 33 (180)
||+||||+|..++..+.. ... .++-|...
T Consensus 11 GGvGKTT~a~nLA~~La~--~G~-rVlliD~D 39 (289)
T 2afh_E 11 GGIGKSTTTQNLVAALAE--MGK-KVMIVGCD 39 (289)
T ss_dssp TTSSHHHHHHHHHHHHHH--TTC-CEEEEEEC
T ss_pred CcCcHHHHHHHHHHHHHH--CCC-eEEEEecC
Confidence 899999999999888642 222 34555544
No 219
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.57 E-value=0.081 Score=38.30 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=13.1
Q ss_pred CCCCcHHHHHHHHHc
Q 046006 1 MGGVGKTTLLTHINN 15 (180)
Q Consensus 1 mgGiGKTtLA~~~~~ 15 (180)
.+|+|||||++.++.
T Consensus 38 pnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 38 GTGTGKTTFAAQFIY 52 (251)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999884
No 220
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=91.53 E-value=0.075 Score=39.22 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 28 GGvGKTT~a~nLA~~la 44 (262)
T 2ph1_A 28 GGVGKSTVTALLAVHYA 44 (262)
T ss_dssp SCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999988764
No 221
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.52 E-value=0.12 Score=40.15 Aligned_cols=17 Identities=41% Similarity=0.554 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 35 GGvGKTTvA~~LA~~lA 51 (349)
T 3ug7_A 35 GGVGKTTMSAATGVYLA 51 (349)
T ss_dssp SSTTHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 89999999999887753
No 222
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.52 E-value=0.079 Score=39.18 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.+...+
T Consensus 56 ~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 56 MMGSGKTTVGKIMARSL 72 (250)
T ss_dssp STTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 58999999999998864
No 223
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=91.52 E-value=0.13 Score=38.51 Aligned_cols=37 Identities=24% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC-CCCHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK-DLQLEKI 41 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~ 41 (180)
||+||||+|..++..+.. .. ..++-|.... ..+....
T Consensus 14 GGvGKTT~a~nLA~~La~--~G-~~VlliD~D~~q~~l~~~ 51 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLY--GG-AKVAVIDLDLRQRTSARF 51 (286)
T ss_dssp SCTTHHHHHHHHHHHHHH--TT-CCEEEEECCTTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--CC-CcEEEEECCCCCCCHHHH
Confidence 899999999999888642 22 2355566555 4444443
No 224
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.52 E-value=0.085 Score=37.30 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
++|+|||||++.+...
T Consensus 12 psGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 12 PSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhh
Confidence 4799999999999765
No 225
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.46 E-value=0.079 Score=41.26 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||++|+.+++..
T Consensus 80 p~GtGKT~la~~la~~l 96 (376)
T 1um8_A 80 PTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999874
No 226
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.36 E-value=0.07 Score=38.44 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+|||++|..+++.+
T Consensus 66 PPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 66 PANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CGGGCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999988874
No 227
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.34 E-value=0.088 Score=37.23 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||+++.+...+
T Consensus 30 ~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 30 LSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998764
No 228
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.21 E-value=0.092 Score=37.47 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHHc
Q 046006 1 MGGVGKTTLLTHINN 15 (180)
Q Consensus 1 mgGiGKTtLA~~~~~ 15 (180)
++|+||||+++.+..
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999976
No 229
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=91.20 E-value=0.086 Score=42.35 Aligned_cols=36 Identities=0% Similarity=-0.036 Sum_probs=28.5
Q ss_pred eEeecCCChhhhHHHHHHH-----------HHHHHHHHc-CCChHHHH
Q 046006 106 NFKVECLSDNDAWELLRQK-----------LAQTVAKKC-VGLPLALI 141 (180)
Q Consensus 106 ~~~l~~L~~~~a~~Lf~~~-----------~~~~i~~~c-~g~PLal~ 141 (180)
.+.+++++.++..+++... ....|++.+ .|.|....
T Consensus 360 ~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~ 407 (456)
T 2c9o_A 360 IIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSV 407 (456)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHH
Confidence 4689999999999999865 567788888 78886443
No 230
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.18 E-value=0.09 Score=41.77 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++.++
T Consensus 266 ~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CTTSSHHHHHHHHTGGG
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 58999999999998874
No 231
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.14 E-value=0.094 Score=37.11 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
+.|+||||+|+.+...
T Consensus 20 ~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 20 KIGTGKSTVCEILKNK 35 (192)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh
Confidence 4799999999999876
No 232
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=91.13 E-value=0.096 Score=37.19 Aligned_cols=17 Identities=24% Similarity=0.501 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||++.+..-.
T Consensus 28 pnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 28 PSAVGKSTVVRCLRERI 44 (207)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 37999999999998764
No 233
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=91.11 E-value=0.089 Score=39.47 Aligned_cols=30 Identities=30% Similarity=0.196 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
||+||||+|..++..+.. .. ..++-|....
T Consensus 46 GGvGKTT~a~nLA~~la~--~G-~rVlliD~D~ 75 (298)
T 2oze_A 46 GGVGKSKLSTMFAYLTDK--LN-LKVLMIDKDL 75 (298)
T ss_dssp SSSSHHHHHHHHHHHHHH--TT-CCEEEEEECT
T ss_pred CCchHHHHHHHHHHHHHh--CC-CeEEEEeCCC
Confidence 899999999999887642 22 2345555443
No 234
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.09 E-value=0.092 Score=38.53 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 30 ~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQLL 46 (252)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998864
No 235
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.08 E-value=0.1 Score=36.29 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||+..+...+
T Consensus 12 ~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 12 YKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 36999999999998875
No 236
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=91.04 E-value=0.091 Score=37.87 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
||+||||+|..++..+.. . -..++.+....
T Consensus 12 gGvGKTt~a~~LA~~la~--~-g~~VlliD~D~ 41 (237)
T 1g3q_A 12 GGTGKTTVTANLSVALGD--R-GRKVLAVDGDL 41 (237)
T ss_dssp TTSSHHHHHHHHHHHHHH--T-TCCEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHh--c-CCeEEEEeCCC
Confidence 899999999999988642 2 22455666543
No 237
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.04 E-value=0.099 Score=38.48 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.+...+
T Consensus 35 ~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 35 PSGAGKGTLCKALAESL 51 (252)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999998654
No 238
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.00 E-value=0.17 Score=36.86 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.+..-.
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 39 PSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 36999999999998654
No 239
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.00 E-value=0.18 Score=38.65 Aligned_cols=17 Identities=41% Similarity=0.550 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 28 GGvGKTTva~~LA~~lA 44 (329)
T 2woo_A 28 GGVGKTTTSCSLAIQMS 44 (329)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999999887753
No 240
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.99 E-value=0.081 Score=38.27 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=15.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+||+||||.|+.++..+
T Consensus 37 pPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 37 GPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999999885
No 241
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.96 E-value=0.099 Score=36.76 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 10 ~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 10 PSASGKSSVARRVAAAL 26 (208)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999998864
No 242
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.90 E-value=0.097 Score=39.85 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||+||..+++..
T Consensus 160 ~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 160 DMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999874
No 243
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.81 E-value=0.32 Score=34.92 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.+...+
T Consensus 14 ~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERL 30 (213)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999999886
No 244
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.77 E-value=0.38 Score=34.71 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=40.4
Q ss_pred CCCcHHHHHHHHHcccccccCCC-CeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-----------------CCCCcChH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDF-DCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD-----------------SWKNKNSE 63 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-----------------~~~~~~~~ 63 (180)
.|+||||+.....-+........ ...+.+.........++...+...++..... ..-....+
T Consensus 85 TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg 164 (235)
T 3llm_A 85 TGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVG 164 (235)
T ss_dssp TTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHH
T ss_pred CCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECHH
Confidence 69999986655433211111222 2233333333333445555665554432000 00012345
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCC
Q 046006 64 EKALEIFRFLSKKKFVLLLDDKWE 87 (180)
Q Consensus 64 ~~~~~l~~~L~~k~~LlVlDdv~~ 87 (180)
.+.+.+...+.+ --++|+|+++.
T Consensus 165 ~l~~~l~~~l~~-~~~lVlDEah~ 187 (235)
T 3llm_A 165 VLLRKLEAGIRG-ISHVIVDEIHE 187 (235)
T ss_dssp HHHHHHHHCCTT-CCEEEECCTTS
T ss_pred HHHHHHHhhhcC-CcEEEEECCcc
Confidence 555666554433 34789999875
No 245
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.76 E-value=0.57 Score=38.83 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCC-CHHHHHHHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDL-QLEKIQEIV 45 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i 45 (180)
.|+|||+|+..+.++ .+-+.++++-+++.. ...++++++
T Consensus 241 ~g~GKT~L~~~ia~~-----~~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 241 FGAGKTVVQHQIAKW-----SDVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp TTSCHHHHHHHHHHH-----SSCSEEEEEEEEECHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHhc-----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 699999999999887 234678888787653 344444443
No 246
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.75 E-value=0.089 Score=38.52 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 17 ~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 17 PAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998774
No 247
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=90.71 E-value=0.12 Score=40.41 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS 33 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 33 (180)
||+||||+|..++..+.. + -..++.+...
T Consensus 153 GGvGKTT~a~nLA~~La~-~--g~rVlliD~D 181 (373)
T 3fkq_A 153 GGVGTSTVAAACAIAHAN-M--GKKVFYLNIE 181 (373)
T ss_dssp TTSSHHHHHHHHHHHHHH-H--TCCEEEEECC
T ss_pred CCChHHHHHHHHHHHHHh-C--CCCEEEEECC
Confidence 899999999999887642 1 1235666644
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.68 E-value=0.11 Score=37.31 Aligned_cols=17 Identities=47% Similarity=0.755 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.+...+
T Consensus 31 psGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 31 PSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp STTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 46999999999998753
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.65 E-value=0.11 Score=36.93 Aligned_cols=17 Identities=18% Similarity=0.388 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.+...+
T Consensus 27 PSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 27 ASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHhhC
Confidence 47999999999998764
No 250
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.63 E-value=0.2 Score=36.19 Aligned_cols=17 Identities=35% Similarity=0.327 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 38 ~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 38 ASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CTTSCHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 36999999999998653
No 251
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=90.62 E-value=0.15 Score=39.73 Aligned_cols=35 Identities=31% Similarity=0.474 Sum_probs=23.7
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHH
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLE 39 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 39 (180)
||+||||+|..++..+.. .=..++-|......+..
T Consensus 11 GGvGKTT~a~nLA~~LA~---~G~rVLlID~D~q~~~~ 45 (361)
T 3pg5_A 11 GGVGKTTLSTNVAHYFAL---QGKRVLYVDCDPQCNAT 45 (361)
T ss_dssp CCHHHHHHHHHHHHHHHH---TTCCEEEEECCTTCTTH
T ss_pred CCCcHHHHHHHHHHHHHh---CCCcEEEEEcCCCCChh
Confidence 899999999999888642 22346667665444433
No 252
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.60 E-value=0.082 Score=40.30 Aligned_cols=17 Identities=18% Similarity=0.358 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||+||+.+++..
T Consensus 54 ~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 54 VPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 47999999999998874
No 253
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.54 E-value=0.31 Score=35.67 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=19.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWI 30 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv 30 (180)
++|+||||+++.+...+. ...+..+...
T Consensus 35 ~~GsGKsT~~~~l~~~l~--~~~~~~~~~~ 62 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQ--QNGIDHITRT 62 (236)
T ss_dssp STTSCHHHHHHHHHHHHH--HTTCCCEEEE
T ss_pred CCCCCHHHHHHHHHHHHH--hcCCCeeeee
Confidence 479999999999998863 2445533333
No 254
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=90.53 E-value=0.11 Score=37.14 Aligned_cols=17 Identities=24% Similarity=0.098 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 11 gGvGKTt~a~nLa~~la 27 (224)
T 1byi_A 11 TEVGKTVASCALLQAAK 27 (224)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999987763
No 255
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.50 E-value=0.33 Score=34.90 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=25.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGK 47 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 47 (180)
+.|+||||+++.+...+. ...+..+.+..-.....+-+.+++++.
T Consensus 11 ~~gsGKsT~~~~l~~~l~--~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 11 LEGAGKTTARNVVVETLE--QLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH--HcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 479999999999998863 234423333322222233444555544
No 256
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.34 E-value=0.12 Score=38.47 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||+.+++...
T Consensus 38 ~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 38 PGGAGKSMLALQLAAQI 54 (279)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999998653
No 257
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.33 E-value=0.12 Score=37.47 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
++|+||||+++.+...+.
T Consensus 34 ~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CTTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 479999999999999863
No 258
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.32 E-value=0.11 Score=38.06 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
||+||||+|..++..+.. .. ..++-|....
T Consensus 16 GGvGKTt~a~~LA~~la~--~g-~~VlliD~D~ 45 (257)
T 1wcv_1 16 GGVGKTTTAINLAAYLAR--LG-KRVLLVDLDP 45 (257)
T ss_dssp CCHHHHHHHHHHHHHHHH--TT-CCEEEEECCT
T ss_pred CCchHHHHHHHHHHHHHH--CC-CCEEEEECCC
Confidence 899999999999888642 22 2355555443
No 259
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.32 E-value=0.12 Score=39.42 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||++.+..-+
T Consensus 98 ~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 98 SVAVGKSTTARVLQALL 114 (312)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhhc
Confidence 36999999999998765
No 260
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.31 E-value=0.22 Score=36.97 Aligned_cols=17 Identities=41% Similarity=0.425 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 40 ~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 40 SSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 36999999999998664
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.31 E-value=0.24 Score=36.23 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 32 ~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 32 PTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 36999999999998653
No 262
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.27 E-value=0.22 Score=37.31 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCcEEEEEeCCCCc
Q 046006 66 ALEIFRFLSKKKFVLLLDDKWER 88 (180)
Q Consensus 66 ~~~l~~~L~~k~~LlVlDdv~~~ 88 (180)
.-.+...|-.++=+|+||+--..
T Consensus 151 Rv~iAraL~~~P~lLlLDEPts~ 173 (275)
T 3gfo_A 151 RVAIAGVLVMEPKVLILDEPTAG 173 (275)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTT
T ss_pred HHHHHHHHHcCCCEEEEECcccc
Confidence 34466667778889999996654
No 263
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.26 E-value=0.95 Score=44.19 Aligned_cols=70 Identities=23% Similarity=0.224 Sum_probs=42.8
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-C--CCCcChHHHHHHHHHHhCCCc
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGD-S--WKNKNSEEKALEIFRFLSKKK 77 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~--~~~~~~~~~~~~l~~~L~~k~ 77 (180)
++|+|||++|+.+.... ..+ ..+.++.+...+...++..+-..+...... . ..+. -.+++
T Consensus 1275 PpGtGKT~la~~~l~~~----~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~------------~~gk~ 1337 (2695)
T 4akg_A 1275 PPGSGKTMIMNNALRNS----SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPK------------SDIKN 1337 (2695)
T ss_dssp STTSSHHHHHHHHHHSC----SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEB------------SSSSC
T ss_pred CCCCCHHHHHHHHHhcC----CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCC------------CCCce
Confidence 48999999998877663 223 345677777777777766666555321000 0 0000 03678
Q ss_pred EEEEEeCCCC
Q 046006 78 FVLLLDDKWE 87 (180)
Q Consensus 78 ~LlVlDdv~~ 87 (180)
+++.+||++-
T Consensus 1338 ~VlFiDEinm 1347 (2695)
T 4akg_A 1338 LVLFCDEINL 1347 (2695)
T ss_dssp EEEEEETTTC
T ss_pred EEEEeccccc
Confidence 8999999654
No 264
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=90.25 E-value=0.12 Score=38.01 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=20.7
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSK 34 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~ 34 (180)
||+||||+|..++..+.. .. ..++-+....
T Consensus 12 gGvGKTt~a~~LA~~la~--~g-~~VlliD~D~ 41 (263)
T 1hyq_A 12 GGTGKTTITANLGVALAQ--LG-HDVTIVDADI 41 (263)
T ss_dssp SCSCHHHHHHHHHHHHHH--TT-CCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHh--CC-CcEEEEECCC
Confidence 899999999999988642 22 2355566543
No 265
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.25 E-value=0.11 Score=37.68 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+.|+||||+++.++..+
T Consensus 10 ~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 10 NIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CTTSSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 46999999999999875
No 266
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.24 E-value=0.081 Score=42.37 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||++..++..+
T Consensus 107 ~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 107 IQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CSSSSTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998875
No 267
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.23 E-value=0.12 Score=38.97 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||||+.+...+
T Consensus 39 ~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 39 PQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999988775
No 268
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.19 E-value=0.11 Score=39.86 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||||..++..+
T Consensus 13 ptGsGKTtla~~La~~l 29 (323)
T 3crm_A 13 PTAAGKTDLAMALADAL 29 (323)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998874
No 269
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.19 E-value=0.13 Score=37.57 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||++.+...+
T Consensus 33 ~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 33 GTASGKSTVCEKIMELL 49 (245)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 36999999999998753
No 270
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.18 E-value=0.56 Score=38.24 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=21.7
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCC
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQ 37 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~ 37 (180)
.+|+|||||++.++..+. ...+.+.+.-...+.
T Consensus 301 pNGSGKTTLl~~LAgll~----~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 301 VNGVGKTTTIGKLARQFE----QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTSSHHHHHHHHHHHHH----HTTCCEEEECCCTTC
T ss_pred CCcccHHHHHHHHHHHhh----hcCCeEEEecCcccc
Confidence 379999999999988752 123555555444443
No 271
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.14 E-value=0.13 Score=38.63 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||++.++...
T Consensus 43 ~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 43 GSGMGKSTFVRQQALQW 59 (296)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999998874
No 272
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.11 E-value=0.24 Score=36.87 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 45 ~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 45 PNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CTTSCHHHHHHHHTSSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 36999999999998653
No 273
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=90.11 E-value=0.12 Score=39.46 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS 33 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 33 (180)
||+||||.|..+..-+.+ .. ..+.-|...
T Consensus 57 GGVGKTTtavNLA~aLA~--~G-kkVllID~D 85 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFSI--LG-KRVLQIGCD 85 (314)
T ss_dssp TTSSHHHHHHHHHHHHHH--TT-CCEEEEEES
T ss_pred CccCHHHHHHHHHHHHHH--CC-CeEEEEecC
Confidence 899999999888776531 11 235555544
No 274
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.08 E-value=0.13 Score=38.49 Aligned_cols=15 Identities=27% Similarity=0.665 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHHc
Q 046006 1 MGGVGKTTLLTHINN 15 (180)
Q Consensus 1 mgGiGKTtLA~~~~~ 15 (180)
++|+||||+|+.+..
T Consensus 83 ~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 83 ISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999983
No 275
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.06 E-value=0.14 Score=37.01 Aligned_cols=17 Identities=24% Similarity=0.425 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||.+.+....
T Consensus 24 psGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 24 PSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhccC
Confidence 47999999999998764
No 276
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.97 E-value=0.46 Score=33.81 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
-|+||||+++.+++.+.
T Consensus 11 dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 11 EGSGKTTVINEVYHRLV 27 (205)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 59999999999998863
No 277
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.93 E-value=0.23 Score=36.02 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 42 ~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 42 STGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 36999999999998764
No 278
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.83 E-value=0.26 Score=35.42 Aligned_cols=17 Identities=47% Similarity=0.698 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 43 ~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 43 PNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 36999999999998764
No 279
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.79 E-value=0.12 Score=37.76 Aligned_cols=17 Identities=41% Similarity=0.571 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 16 ~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 16 APGAGKGTQANFIKEKF 32 (230)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998875
No 280
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=89.77 E-value=0.15 Score=34.80 Aligned_cols=16 Identities=38% Similarity=0.382 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
.|+|||||.+.++.-+
T Consensus 42 nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 42 LGAGKTTLTRGMLQGI 57 (158)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC
Confidence 5999999999998764
No 281
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.76 E-value=0.25 Score=36.26 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 43 ~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 43 RSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 36999999999997764
No 282
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.64 E-value=0.14 Score=36.48 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
+|+|||||+..++...
T Consensus 47 ~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 47 IGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 7999999999998773
No 283
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.63 E-value=0.27 Score=36.57 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 58 ~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 58 PSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHHcCC
Confidence 36999999999998654
No 284
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.57 E-value=0.27 Score=35.93 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 40 ~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 40 ANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 36999999999998653
No 285
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.57 E-value=0.17 Score=35.70 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++..+
T Consensus 9 ~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 9 PPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCSSCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhc
Confidence 37999999999988764
No 286
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.56 E-value=0.16 Score=35.35 Aligned_cols=17 Identities=41% Similarity=0.593 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||+..+...+
T Consensus 14 ~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 14 WSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 37999999999998764
No 287
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.55 E-value=0.16 Score=33.76 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 12 ~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 12 GGVGKSALTIQLIQN 26 (166)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 799999999999765
No 288
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.55 E-value=0.13 Score=41.99 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||+||+.+++..
T Consensus 49 pPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 49 PPGIAKSLIARRLKFAF 65 (500)
T ss_dssp CSSSSHHHHHHHGGGGB
T ss_pred CchHHHHHHHHHHHHHH
Confidence 48999999999999874
No 289
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=89.54 E-value=0.084 Score=40.34 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||+||+.+++..
T Consensus 53 ~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 53 DRGTGKSTAVRALAALL 69 (350)
T ss_dssp CGGGCTTHHHHHHHHHS
T ss_pred CCCccHHHHHHHHHHhC
Confidence 37999999999999874
No 290
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.54 E-value=0.16 Score=39.23 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+.|+||||||..++..+
T Consensus 48 PTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp STTSSHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHHC
Confidence 46999999999999875
No 291
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.47 E-value=0.27 Score=36.66 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 53 ~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 53 PNGSGKSTVAALLQNLY 69 (271)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 36999999999998664
No 292
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.37 E-value=0.28 Score=36.22 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 41 ~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 41 PNGSGKSTLINVITGFL 57 (257)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 36999999999997653
No 293
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=89.34 E-value=0.15 Score=40.88 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||++|+.++...
T Consensus 58 ppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 58 PTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 58999999999998875
No 294
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.33 E-value=0.091 Score=38.80 Aligned_cols=17 Identities=18% Similarity=0.221 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+.|+||||+|+.+...+
T Consensus 32 ~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 32 NIAAGKSTFVNILKQLC 48 (263)
T ss_dssp STTSSHHHHHTTTGGGC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 36999999999998875
No 295
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.20 E-value=0.3 Score=36.12 Aligned_cols=17 Identities=41% Similarity=0.473 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 49 ~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 49 PNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 36999999999998653
No 296
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=89.19 E-value=0.16 Score=39.97 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 118 GGvGKTT~a~nLA~~La 134 (398)
T 3ez2_A 118 GGVSKTVSTVSLAHAMR 134 (398)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHH
Confidence 89999999999987753
No 297
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.16 E-value=0.15 Score=39.50 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||||..++..+
T Consensus 15 ptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 15 PTASGKTELSIEVAKKF 31 (340)
T ss_dssp STTSSHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHHHHc
Confidence 47999999999998875
No 298
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.08 E-value=0.26 Score=36.09 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 36 ~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 36 PSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 36999999999987653
No 299
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.08 E-value=0.21 Score=37.82 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||++|+.+.+..
T Consensus 33 e~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 33 DSGTGKELVARALHACS 49 (304)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCCchHHHHHHHHHHhC
Confidence 37999999999998863
No 300
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=88.99 E-value=0.17 Score=39.39 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.++..+
T Consensus 32 ~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQII 48 (359)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 58999999999887754
No 301
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.97 E-value=0.14 Score=41.86 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=16.0
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
++|+||||+|+.+...+.
T Consensus 403 lsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TCCSCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHH
Confidence 579999999999999873
No 302
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.94 E-value=0.56 Score=38.27 Aligned_cols=86 Identities=10% Similarity=0.149 Sum_probs=45.9
Q ss_pred CCCcHHHHHH-HHHcccccc----cCCCC-eEEEEEeCCCC-CHHHHHHHHHHHhCCCCC---CCCCCcChHH------H
Q 046006 2 GGVGKTTLLT-HINNKFLVS----STDFD-CVIWIVVSKDL-QLEKIQEIVGKKVGLLDG---DSWKNKNSEE------K 65 (180)
Q Consensus 2 gGiGKTtLA~-~~~~~~~~~----~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~------~ 65 (180)
+|+|||+||. .+.++. .. .++-+ .++++-+++.. ...++.+.+...=..... ......+... .
T Consensus 171 ~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~ 249 (510)
T 2ck3_A 171 RQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYS 249 (510)
T ss_dssp TTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCHHHHHHHHHH
Confidence 6999999954 566662 21 12344 46777788765 455666666542111100 0011111111 1
Q ss_pred HHHHHHHh--CCCcEEEEEeCCCCc
Q 046006 66 ALEIFRFL--SKKKFVLLLDDKWER 88 (180)
Q Consensus 66 ~~~l~~~L--~~k~~LlVlDdv~~~ 88 (180)
.-.+.+++ +++.+|+++||+...
T Consensus 250 a~tiAEyfrd~G~dVLli~Dsltr~ 274 (510)
T 2ck3_A 250 GCSMGEYFRDNGKHALIIYDDLSKQ 274 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEEETHHHH
T ss_pred HHHHHHHHHHcCCcEEEEEcCHHHH
Confidence 22334444 578999999998643
No 303
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.92 E-value=0.31 Score=36.16 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=16.0
Q ss_pred HHHHHHhCCCcEEEEEeCCCCc
Q 046006 67 LEIFRFLSKKKFVLLLDDKWER 88 (180)
Q Consensus 67 ~~l~~~L~~k~~LlVlDdv~~~ 88 (180)
-.+...|-.++=+++||+--..
T Consensus 147 v~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 147 VAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHcCCCEEEEcCcccc
Confidence 3455666777889999997665
No 304
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.90 E-value=0.14 Score=41.35 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=16.7
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
..+.+++++.++..+++...
T Consensus 318 ~~i~v~~p~~e~~~~iL~~~ 337 (468)
T 3pxg_A 318 QPIQVDQPSVDESIQILQGL 337 (468)
T ss_dssp EEEECCCCCHHHHHHHHHHT
T ss_pred ccceeCCCCHHHHHHHHHHH
Confidence 36889999999999998854
No 305
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.90 E-value=0.2 Score=33.25 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 10 ~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 10 PNVGKSSLFNRLLKK 24 (161)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999876
No 306
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.81 E-value=0.33 Score=36.40 Aligned_cols=17 Identities=47% Similarity=0.614 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 55 ~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 55 LNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 36999999999998764
No 307
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.81 E-value=0.18 Score=38.29 Aligned_cols=17 Identities=35% Similarity=0.706 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.++..+
T Consensus 110 ~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 110 VNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHH
Confidence 47999999999998775
No 308
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=88.77 E-value=0.19 Score=38.59 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||||+.+...+
T Consensus 100 psGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 100 SVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 37999999999987764
No 309
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.77 E-value=0.2 Score=34.81 Aligned_cols=15 Identities=40% Similarity=0.775 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||.+.+...
T Consensus 38 ~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 38 SGVGKSNLLSRFTRN 52 (191)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 799999999999876
No 310
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.72 E-value=0.17 Score=34.82 Aligned_cols=15 Identities=47% Similarity=0.667 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||.+.++..
T Consensus 11 ~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 11 TGSGKTTLLQQLMKT 25 (184)
T ss_dssp TTSSHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHhcC
Confidence 799999999999874
No 311
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.68 E-value=0.18 Score=36.87 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 39 QVGCGKSSLLSALLAEM 55 (237)
T ss_dssp STTSSHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 36999999999998764
No 312
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.65 E-value=0.17 Score=36.16 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||||..+..+.
T Consensus 42 psGsGKStLA~~La~~g 58 (205)
T 2qmh_A 42 DSGVGKSETALELVQRG 58 (205)
T ss_dssp CCTTTTHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHhC
Confidence 47999999999998874
No 313
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.49 E-value=0.23 Score=33.57 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 12 ~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 12 PNVGKSTIFNALTGE 26 (165)
T ss_dssp TTSSHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHhCC
Confidence 799999999999875
No 314
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.46 E-value=0.12 Score=37.27 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=8.8
Q ss_pred CCCCcHHHHHHHHH-cc
Q 046006 1 MGGVGKTTLLTHIN-NK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~-~~ 16 (180)
+.|+|||||++.+. ..
T Consensus 35 p~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 35 PSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp SCC----CHHHHHHC--
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 47999999999998 54
No 315
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.35 E-value=0.38 Score=37.50 Aligned_cols=47 Identities=17% Similarity=0.242 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCC--CCCCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006 42 QEIVGKKVGLLD--GDSWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER 88 (180)
Q Consensus 42 ~~~i~~~l~~~~--~~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~ 88 (180)
..++++.++... ......-+..+ ..-.+.+.|-.++-+|+||+--+.
T Consensus 119 v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~ 168 (359)
T 3fvq_A 119 IEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSA 168 (359)
T ss_dssp HHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 455666666541 11112223333 334566677778889999986544
No 316
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.32 E-value=0.2 Score=35.54 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
+|+|||||+..+....
T Consensus 39 ~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 39 IGSGKTLLIERTIERI 54 (221)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 7999999999998774
No 317
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.28 E-value=0.22 Score=34.32 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||+..+...
T Consensus 30 ~~~GKSsli~~l~~~ 44 (190)
T 3con_A 30 GGVGKSALTIQLIQN 44 (190)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 799999999999866
No 318
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.25 E-value=0.22 Score=38.15 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||||..++..+
T Consensus 11 ptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 11 PTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CTTSCHHHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHhC
Confidence 47999999999998774
No 319
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.20 E-value=0.22 Score=37.81 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||++.+...+
T Consensus 88 ~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 88 SVAVGKSTTARVLQALL 104 (308)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999998764
No 320
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=88.20 E-value=0.32 Score=40.26 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS 33 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 33 (180)
||+||||+|..++..+.+ . -..++.|+..
T Consensus 17 GGvGKTT~a~~lA~~lA~-~--G~rVLlvd~D 45 (589)
T 1ihu_A 17 GGVGKTSISCATAIRLAE-Q--GKRVLLVSTD 45 (589)
T ss_dssp TTSSHHHHHHHHHHHHHH-T--TCCEEEEECC
T ss_pred CcCHHHHHHHHHHHHHHH-C--CCcEEEEECC
Confidence 899999999999887642 1 1235555544
No 321
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=88.19 E-value=0.2 Score=41.01 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 43 lpGSGKSTia~~La~~L 59 (520)
T 2axn_A 43 LPARGKTYISKKLTRYL 59 (520)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998764
No 322
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.13 E-value=0.21 Score=40.29 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.++..+
T Consensus 47 lpGsGKSTia~~La~~l 63 (469)
T 1bif_A 47 LPARGKTYISKKLTRYL 63 (469)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998764
No 323
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=88.08 E-value=0.21 Score=38.78 Aligned_cols=16 Identities=44% Similarity=0.696 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
||+||||+|..++..+
T Consensus 27 GGvGKTt~a~~lA~~l 42 (348)
T 3io3_A 27 GGVGKTTTSSSVAVQL 42 (348)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 8999999999887664
No 324
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=88.06 E-value=0.23 Score=33.17 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 14 ~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 14 GAVGKSSMIQRYCKG 28 (168)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999875
No 325
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.00 E-value=0.14 Score=35.46 Aligned_cols=16 Identities=38% Similarity=0.490 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
+|+|||||++.+...+
T Consensus 11 SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 11 SDSGKTTLITRMMPIL 26 (171)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999998775
No 326
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.92 E-value=0.24 Score=34.54 Aligned_cols=15 Identities=40% Similarity=0.775 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||.+.+...
T Consensus 14 ~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 14 SGVGKSNLLSRFTRN 28 (199)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999876
No 327
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.87 E-value=0.25 Score=34.54 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
.+|+||||||..+..+
T Consensus 24 ~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 24 EANIGKSELSLALIDR 39 (181)
T ss_dssp SSSSSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHc
Confidence 3799999999999876
No 328
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.86 E-value=0.26 Score=33.80 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 16 ~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 16 PNVGKSTIFNALTGE 30 (188)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999874
No 329
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.67 E-value=0.26 Score=33.20 Aligned_cols=15 Identities=47% Similarity=0.643 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 13 ~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 13 PGVGKTSLASLFAGK 27 (175)
T ss_dssp TTSSHHHHHHHHHCC
T ss_pred CCccHHHHHHHHhcC
Confidence 699999999999866
No 330
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.65 E-value=0.25 Score=37.54 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+||||+++.++..+
T Consensus 108 ~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 108 VNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 47999999999998875
No 331
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.44 E-value=0.26 Score=32.75 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 13 ~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 13 GGVGKSALTLQFMYD 27 (168)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999865
No 332
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.44 E-value=0.23 Score=37.98 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+.|+||||||..++..+
T Consensus 18 ptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 18 PTASGKTALAIELRKIL 34 (316)
T ss_dssp CTTSCHHHHHHHHHHHS
T ss_pred CCccCHHHHHHHHHHhC
Confidence 46999999999998874
No 333
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.43 E-value=0.23 Score=34.73 Aligned_cols=16 Identities=31% Similarity=0.183 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
.|+||||++..++.++
T Consensus 12 ~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 12 MYSGKTTELLSFVEIY 27 (184)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5999999998777664
No 334
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.35 E-value=0.25 Score=35.70 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+++.+...+
T Consensus 24 ~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 24 PASSGKSTVAKIIAKDF 40 (236)
T ss_dssp SSCSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998764
No 335
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.32 E-value=0.19 Score=35.95 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
..|+|||||.+.++.-
T Consensus 30 ~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 30 PAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CTTSSTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhcC
Confidence 3699999999998764
No 336
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=87.31 E-value=0.25 Score=38.40 Aligned_cols=16 Identities=50% Similarity=0.636 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
||+||||+|..++..+
T Consensus 27 GGvGKTTvaanLA~~l 42 (354)
T 2woj_A 27 GGVGKTTSSCSIAIQM 42 (354)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 8999999999887765
No 337
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.21 E-value=0.18 Score=36.43 Aligned_cols=16 Identities=44% Similarity=0.518 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
+.|+|||||++.+...
T Consensus 28 ~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 28 NIGSGKTTYLNHFEKY 43 (230)
T ss_dssp STTSCHHHHHHTTGGG
T ss_pred CCCCCHHHHHHHHHhc
Confidence 3699999999998765
No 338
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.16 E-value=0.43 Score=35.10 Aligned_cols=17 Identities=35% Similarity=0.524 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 34 ~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 34 PNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CTTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhCCC
Confidence 36999999999998764
No 339
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=87.13 E-value=0.21 Score=39.16 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
||+||||+|..++..+.
T Consensus 11 GG~GKTt~a~~la~~la 27 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLA 27 (374)
T ss_dssp BHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHH
Confidence 89999999999887653
No 340
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.11 E-value=0.28 Score=34.84 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=14.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 11 ~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 11 PAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 47999999999998764
No 341
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.01 E-value=0.29 Score=34.53 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
.+|+|||||...+.+.
T Consensus 20 ~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 20 PQNSGKTSLLTLLTTD 35 (218)
T ss_dssp STTSSHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcC
Confidence 3799999999999876
No 342
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.00 E-value=0.52 Score=36.76 Aligned_cols=47 Identities=23% Similarity=0.111 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCCCC--CCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006 42 QEIVGKKVGLLDGD--SWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER 88 (180)
Q Consensus 42 ~~~i~~~l~~~~~~--~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~ 88 (180)
..++++.++..... ....-+..+ ..-.+.+.|-.++-+|+||+--+.
T Consensus 114 v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (362)
T 2it1_A 114 VREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSN 163 (362)
T ss_dssp HHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGG
T ss_pred HHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 34556666654211 112233333 334566777788889999996544
No 343
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.96 E-value=0.28 Score=36.03 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
..|+|||||.+.++.-
T Consensus 37 ~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 37 PNGAGKSTLGKILAGD 52 (250)
T ss_dssp STTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 3699999999999874
No 344
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.96 E-value=0.31 Score=33.61 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 57 ~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 57 QNSGKTSLLTLLTTD 71 (193)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999876
No 345
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.95 E-value=0.52 Score=36.89 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCC--CCCC-CCcChHHHHHHHHHHhCCCcEEEEEeCCCCc
Q 046006 42 QEIVGKKVGLLD--GDSW-KNKNSEEKALEIFRFLSKKKFVLLLDDKWER 88 (180)
Q Consensus 42 ~~~i~~~l~~~~--~~~~-~~~~~~~~~~~l~~~L~~k~~LlVlDdv~~~ 88 (180)
..++++.++... .... .-+..+...-.+.+.|-.++=+|+||+--+.
T Consensus 122 v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 171 (372)
T 1v43_A 122 VRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSN 171 (372)
T ss_dssp HHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 455666666531 1111 1122233344566677777789999996554
No 346
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.94 E-value=0.27 Score=38.62 Aligned_cols=16 Identities=31% Similarity=0.173 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
++|+|||||++.++..
T Consensus 177 ~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 177 PIDSGKTTLAAALLEL 192 (377)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhh
Confidence 4799999999999875
No 347
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=86.90 E-value=0.52 Score=36.65 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCC--CCCCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006 42 QEIVGKKVGLLD--GDSWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER 88 (180)
Q Consensus 42 ~~~i~~~l~~~~--~~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~ 88 (180)
..++++.++... ......-+..+ ..-.+...|-.++=+|+||+--+.
T Consensus 126 v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 175 (355)
T 1z47_A 126 VRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAA 175 (355)
T ss_dssp HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCC
T ss_pred HHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 345566666531 11122233333 334566677778889999996554
No 348
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.82 E-value=0.31 Score=32.57 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 12 ~~~GKssli~~l~~~ 26 (172)
T 2erx_A 12 GGVGKSSLVLRFVKG 26 (172)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999865
No 349
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=86.82 E-value=0.53 Score=36.67 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCC--CCCCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006 42 QEIVGKKVGLLD--GDSWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER 88 (180)
Q Consensus 42 ~~~i~~~l~~~~--~~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~ 88 (180)
..++++.++... ......-+..+ ..-.+.+.|-.++=+|+||+--+.
T Consensus 114 v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~ 163 (359)
T 2yyz_A 114 VVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSN 163 (359)
T ss_dssp HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence 445666666531 11112233333 334566677778889999996554
No 350
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.80 E-value=0.26 Score=32.90 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 11 ~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 11 PGVGKSALARIFGGV 25 (166)
T ss_dssp TTSSHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHcCc
Confidence 799999999998765
No 351
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.77 E-value=0.33 Score=32.51 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
.+|+|||||...+...
T Consensus 10 ~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 10 ESGVGKSTLAGTFGGL 25 (169)
T ss_dssp STTSSHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHhc
Confidence 3799999999998643
No 352
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=86.75 E-value=0.53 Score=36.83 Aligned_cols=16 Identities=44% Similarity=0.472 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
..|+|||||.+.++.-
T Consensus 37 pnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 37 PSGCGKTTTLRMIAGL 52 (372)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCcHHHHHHHHHHcC
Confidence 3799999999999865
No 353
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=86.72 E-value=0.32 Score=33.39 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 16 ~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 16 SQCGKTALLHVFAKD 30 (184)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 799999999999875
No 354
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=86.68 E-value=0.33 Score=32.49 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 15 ~~~GKssli~~l~~~ 29 (170)
T 1z08_A 15 GCVGKTSLVLRYCEN 29 (170)
T ss_dssp TTSCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999865
No 355
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=86.68 E-value=0.32 Score=32.43 Aligned_cols=15 Identities=20% Similarity=0.481 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 12 ~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 12 AAVGKSSIVLRFVSN 26 (170)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998865
No 356
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.65 E-value=0.42 Score=37.06 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCCCC--CCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006 42 QEIVGKKVGLLDGD--SWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER 88 (180)
Q Consensus 42 ~~~i~~~l~~~~~~--~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~ 88 (180)
..++++.++..... ....-+..+ ..-.+.+.|-.++=+|+||+--+.
T Consensus 108 v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~ 157 (348)
T 3d31_A 108 VLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSA 157 (348)
T ss_dssp HHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTT
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcccc
Confidence 34556666654111 112233333 334566677778889999996554
No 357
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=86.65 E-value=0.62 Score=36.20 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=19.9
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEE
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIV 31 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~ 31 (180)
..|+|||||++.+...+. .-.+.+.+.
T Consensus 183 ~sGsGKSTll~~l~~~~~----~~~g~I~ie 209 (361)
T 2gza_A 183 ETGSGKTTLMKALMQEIP----FDQRLITIE 209 (361)
T ss_dssp SSSSCHHHHHHHHHTTSC----TTSCEEEEE
T ss_pred CCCCCHHHHHHHHHhcCC----CCceEEEEC
Confidence 369999999999988752 234566665
No 358
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.60 E-value=0.16 Score=36.93 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=12.8
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
++|+||||+++.+++.+.
T Consensus 33 ~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CC---CHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 479999999999998863
No 359
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.60 E-value=0.56 Score=36.85 Aligned_cols=17 Identities=41% Similarity=0.452 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||.+.++.-.
T Consensus 37 psGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 37 PSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTSSHHHHHHHHHTSS
T ss_pred CCCchHHHHHHHHHcCC
Confidence 47999999999998653
No 360
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.55 E-value=0.34 Score=32.15 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 12 ~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 12 GGVGKSALTVQFVTG 26 (167)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999998765
No 361
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.54 E-value=0.39 Score=36.57 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||++.++.-+
T Consensus 88 ~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 88 PSGAGKSTILRLLFRFY 104 (306)
T ss_dssp SSCHHHHHHHHHHTTSS
T ss_pred CCCchHHHHHHHHHcCC
Confidence 36999999999997654
No 362
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=86.51 E-value=0.33 Score=32.30 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 12 ~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 12 GGVGKSALTVQFVQG 26 (167)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999865
No 363
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=86.51 E-value=0.34 Score=32.36 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 15 ~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 15 TGVGKSSIMWRFVED 29 (170)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999876
No 364
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.46 E-value=0.32 Score=36.17 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
..|+|||||.+.++.-
T Consensus 54 ~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 54 PNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTSSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 3699999999999875
No 365
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=86.38 E-value=0.33 Score=33.18 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 10 ~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 10 SNVGKSTLIYRLTGK 24 (190)
T ss_dssp TTSSHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhCc
Confidence 699999999999876
No 366
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.24 E-value=0.37 Score=32.85 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 13 ~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 13 PNAGKSSLLNALAGR 27 (172)
T ss_dssp TTSSHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHhCC
Confidence 799999999999875
No 367
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=86.20 E-value=0.35 Score=33.18 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 32 ~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 32 SNVGKSSLLNALFNR 46 (195)
T ss_dssp TTSSHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999876
No 368
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=86.09 E-value=0.32 Score=37.57 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHcccc
Q 046006 2 GGVGKTTLLTHINNKFL 18 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~ 18 (180)
=|+||||+++.+.+.+.
T Consensus 16 dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 16 YGIGKSTTGRVMASAAS 32 (334)
T ss_dssp TTSSHHHHHHHHHSGGG
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 49999999999998863
No 369
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=86.08 E-value=0.28 Score=35.35 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.9
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
+.|+||||+++.+.+.+.
T Consensus 13 ~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 13 LDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CSSSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHhc
Confidence 479999999999999863
No 370
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=86.06 E-value=0.37 Score=32.60 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 17 ~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 17 SGVGKTSLMHRYVND 31 (182)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998765
No 371
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=86.06 E-value=0.35 Score=32.71 Aligned_cols=15 Identities=40% Similarity=0.685 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 18 ~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 18 GGVGKSALTIQFIQS 32 (181)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999876
No 372
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=86.04 E-value=0.39 Score=32.44 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 15 ~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 15 GASGKTSLTTCFAQE 29 (178)
T ss_dssp TTSSHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998765
No 373
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.03 E-value=0.36 Score=33.26 Aligned_cols=15 Identities=27% Similarity=0.636 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 32 ~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 32 SNVGKSSFINSLINR 46 (195)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999876
No 374
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=86.00 E-value=0.34 Score=35.13 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.6
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
+.|+||||+++.+.+.+.
T Consensus 29 ~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 479999999999998863
No 375
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.00 E-value=0.31 Score=42.12 Aligned_cols=17 Identities=41% Similarity=0.464 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||+||+.+++..
T Consensus 519 ppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 519 PPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 48999999999999874
No 376
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=85.97 E-value=0.31 Score=40.88 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=15.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 60 lsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 60 LSGAGKTTVSMALEEYL 76 (630)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 58999999999998875
No 377
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=85.83 E-value=0.36 Score=33.31 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 29 ~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 29 LSSGKSALVHRYLTG 43 (184)
T ss_dssp TTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999888765
No 378
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=85.81 E-value=0.32 Score=40.34 Aligned_cols=17 Identities=12% Similarity=0.200 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 404 lsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 404 YMNSGKDAIARALQVTL 420 (573)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 58999999999998875
No 379
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=85.80 E-value=0.33 Score=40.46 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||||+.++...
T Consensus 68 p~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 68 EPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CTTSSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhccC
Confidence 47999999999999875
No 380
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=85.74 E-value=0.36 Score=33.43 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 32 ~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 32 DNAGKTTLLHMLKND 46 (190)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 799999999999874
No 381
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.74 E-value=0.34 Score=35.88 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.+...+
T Consensus 33 p~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 33 PTGSGKSTTIASMIDYI 49 (261)
T ss_dssp STTCSHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhC
Confidence 36999999999987654
No 382
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.73 E-value=0.33 Score=35.96 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 54 ~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 54 HTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhccC
Confidence 36999999999998763
No 383
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=85.70 E-value=0.93 Score=32.85 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
.|.|||.+|..++..
T Consensus 117 tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 117 TGSGKTHVAMAAINE 131 (237)
T ss_dssp SSTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999988776
No 384
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=85.70 E-value=0.37 Score=32.11 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 15 ~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 15 SAVGKSSLVLRFVKG 29 (170)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999864
No 385
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=85.69 E-value=0.37 Score=33.27 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 30 ~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 30 RGAGKSALTVKFLTK 44 (187)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHhC
Confidence 699999999998765
No 386
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=85.67 E-value=0.67 Score=36.20 Aligned_cols=47 Identities=26% Similarity=0.158 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCC--CCCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006 42 QEIVGKKVGLLDG--DSWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER 88 (180)
Q Consensus 42 ~~~i~~~l~~~~~--~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~ 88 (180)
..++++.++.... .....-+..+ ..-.+.+.|-.++=+|++|+--..
T Consensus 144 v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~ 193 (366)
T 3tui_C 144 VTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSA 193 (366)
T ss_dssp HHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTT
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 3445566665311 1122233333 344566777788889999997654
No 387
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=85.66 E-value=0.33 Score=37.69 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
+|+|||||++.++..+
T Consensus 179 nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 179 ESSGKSVLVNKLAAVF 194 (365)
T ss_dssp TTSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHh
Confidence 6999999999987764
No 388
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=85.66 E-value=0.15 Score=38.46 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=11.6
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+||||+|+.+...+
T Consensus 13 ~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 13 SSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp CC---CCTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999998764
No 389
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=85.65 E-value=0.37 Score=32.47 Aligned_cols=15 Identities=47% Similarity=0.707 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 24 ~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 24 MGVGKSCLLHQFTEK 38 (179)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999866
No 390
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.62 E-value=0.38 Score=32.48 Aligned_cols=15 Identities=47% Similarity=0.499 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 17 ~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 17 VDHGKTTLLDAIRHS 31 (178)
T ss_dssp TTTTHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999765
No 391
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=85.61 E-value=0.4 Score=32.34 Aligned_cols=15 Identities=40% Similarity=0.793 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 16 ~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 16 GGVGKSSLMNRYVTN 30 (177)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999865
No 392
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.60 E-value=0.26 Score=40.72 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+|||||++.++..+
T Consensus 377 ~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 377 LSGAGKSTLARALAARL 393 (552)
T ss_dssp SSCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHhh
Confidence 47999999999999875
No 393
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=85.59 E-value=0.38 Score=32.13 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 12 ~~~GKssli~~l~~~ 26 (170)
T 1g16_A 12 SGVGKSCLLVRFVED 26 (170)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999865
No 394
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=85.58 E-value=0.29 Score=33.17 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 16 ~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 16 ARSGKSSLIHRFLTG 30 (178)
T ss_dssp GGGCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999865
No 395
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=85.50 E-value=0.37 Score=32.08 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 9 ~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 9 DAAGKTTILYKLKLG 23 (164)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999754
No 396
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=85.47 E-value=0.65 Score=35.63 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHHHhCCCCCCCCCCcChHHHHHHHHHHhCCCcEEEE
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGKKVGLLDGDSWKNKNSEEKALEIFRFLSKKKFVLL 81 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~k~~LlV 81 (180)
.|+|||||.+.+...+ ..-.+.+.+.-......... -+.++. .. .........+...|..++=+++
T Consensus 180 ~GsGKTTll~~l~g~~----~~~~g~i~i~~~~e~~~~~~----~~~i~~-----~~-ggg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 180 TGSGKTTYIKSIMEFI----PKEERIISIEDTEEIVFKHH----KNYTQL-----FF-GGNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp TTSCHHHHHHHGGGGS----CTTSCEEEEESSCCCCCSSC----SSEEEE-----EC-BTTBCHHHHHHHHTTSCCSEEE
T ss_pred CCCCHHHHHHHHhCCC----cCCCcEEEECCeeccccccc----hhEEEE-----Ee-CCChhHHHHHHHHhhhCCCEEE
Confidence 6999999999998875 22356666653221110000 000000 00 0122334556677788888899
Q ss_pred EeCCCCc
Q 046006 82 LDDKWER 88 (180)
Q Consensus 82 lDdv~~~ 88 (180)
+|++.+.
T Consensus 246 ldE~~~~ 252 (330)
T 2pt7_A 246 LGELRSS 252 (330)
T ss_dssp ECCCCST
T ss_pred EcCCChH
Confidence 9998764
No 397
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=85.42 E-value=0.39 Score=32.15 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 16 ~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 16 DGAGKTTILYRLQVG 30 (171)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999765
No 398
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.42 E-value=0.37 Score=37.59 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+||||+++.++..+
T Consensus 165 ~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 165 VNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhhc
Confidence 36999999999998875
No 399
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=85.42 E-value=0.18 Score=39.74 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=7.2
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
||+||||+|..++..+
T Consensus 121 GGvGKTT~a~nLA~~L 136 (403)
T 3ez9_A 121 GGVSKTVSTVTLAHAL 136 (403)
T ss_dssp -------CHHHHHHHH
T ss_pred CCchHHHHHHHHHHHH
Confidence 8999999998888765
No 400
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=85.37 E-value=0.41 Score=32.65 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 19 ~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 19 AGTGKSCLLHQFIEK 33 (186)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999865
No 401
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=85.34 E-value=0.41 Score=33.52 Aligned_cols=15 Identities=13% Similarity=0.147 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||++|.+++..
T Consensus 8 ~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 8 ARSGKSRHAEALIGD 22 (180)
T ss_dssp TTSSHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHHhc
Confidence 699999999999865
No 402
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.34 E-value=0.36 Score=35.59 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 39 ~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 39 QNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CSSSSHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 36999999999998764
No 403
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=85.34 E-value=0.34 Score=33.24 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 25 ~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 25 DNAGKTTLLKQLASE 39 (181)
T ss_dssp TTSSHHHHHHHHCCS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999876
No 404
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=85.32 E-value=0.36 Score=32.59 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 18 ~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 18 SGVGKSSLLLRFADN 32 (181)
T ss_dssp TTSCHHHHHHHHCSC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999765
No 405
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=85.31 E-value=0.34 Score=33.84 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 34 ~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 34 DNAGKTTLLHMLKDD 48 (198)
T ss_dssp TTSSHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHhcC
Confidence 799999999999764
No 406
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=85.27 E-value=0.4 Score=32.66 Aligned_cols=15 Identities=47% Similarity=0.747 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 27 ~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 27 GGVGKSALTIQFFQK 41 (183)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999866
No 407
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=85.26 E-value=0.4 Score=32.59 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 27 ~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 27 GGVGKSALTLQFMYD 41 (187)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhhC
Confidence 699999999999865
No 408
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=85.19 E-value=0.43 Score=32.53 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 13 ~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 13 DGVGKSALTIQLIQN 27 (189)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999866
No 409
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=85.14 E-value=0.37 Score=34.16 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=15.2
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+.|+||||+|+.++..+
T Consensus 14 ~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 14 EFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CTTSSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999999875
No 410
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=85.13 E-value=0.36 Score=36.92 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.3
Q ss_pred CCCCcHHHHHHHHHcccc
Q 046006 1 MGGVGKTTLLTHINNKFL 18 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~ 18 (180)
.+|+||||++..++..+.
T Consensus 113 ~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 113 VNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp STTSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 379999999999988753
No 411
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=85.12 E-value=0.29 Score=41.82 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=16.6
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
..+.+++++.++..+++...
T Consensus 318 ~~i~v~~p~~~~~~~il~~~ 337 (758)
T 3pxi_A 318 QPIQVDQPSVDESIQILQGL 337 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHT
T ss_pred cEEEeCCCCHHHHHHHHHHH
Confidence 46889999999999998854
No 412
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=85.05 E-value=0.41 Score=32.23 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 23 ~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 23 QSVGKTSLITRFMYD 37 (179)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999855
No 413
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=85.04 E-value=0.41 Score=32.71 Aligned_cols=15 Identities=40% Similarity=0.671 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 20 ~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 20 SGVGKTSVLYQYTDG 34 (195)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999865
No 414
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=85.03 E-value=0.41 Score=32.52 Aligned_cols=15 Identities=47% Similarity=0.680 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 14 ~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 14 GAVGKTCLLISYTTN 28 (186)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999998865
No 415
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=85.00 E-value=0.34 Score=37.37 Aligned_cols=16 Identities=31% Similarity=0.212 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
-|+||||+++.+.+.+
T Consensus 13 dGsGKTT~~~~La~~L 28 (331)
T 1e2k_A 13 HGMGKTTTTQLLVALG 28 (331)
T ss_dssp TTSSHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4999999999998875
No 416
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=84.99 E-value=0.43 Score=32.76 Aligned_cols=16 Identities=50% Similarity=0.482 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
+|+|||||.+.+.+..
T Consensus 23 ~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 23 GLSGKTTNLKWIYSKV 38 (198)
T ss_dssp TTSSHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHhhc
Confidence 6999999998877553
No 417
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=84.85 E-value=0.48 Score=36.82 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCC--CCCCCCcChHH-HHHHHHHHhCCCcEEEEEeCCCCc
Q 046006 42 QEIVGKKVGLLD--GDSWKNKNSEE-KALEIFRFLSKKKFVLLLDDKWER 88 (180)
Q Consensus 42 ~~~i~~~l~~~~--~~~~~~~~~~~-~~~~l~~~L~~k~~LlVlDdv~~~ 88 (180)
..++++.++... ......-+..+ ..-.+...|-.++=+|+||+--+.
T Consensus 121 v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~ 170 (353)
T 1oxx_K 121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170 (353)
T ss_dssp HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 455666666541 11122233333 334566677788889999996554
No 418
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=84.81 E-value=0.46 Score=32.18 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 21 ~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 21 VGAGKSSLVLRFVKD 35 (181)
T ss_dssp TTSCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999998865
No 419
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=84.78 E-value=0.39 Score=35.65 Aligned_cols=16 Identities=50% Similarity=0.596 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
..|+|||||.+.++.-
T Consensus 38 ~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 38 PNGSGKTTLLRAISGL 53 (263)
T ss_dssp CTTSSHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHhCC
Confidence 3699999999999765
No 420
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=84.70 E-value=0.42 Score=36.35 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
.+|+|||||++.+..-
T Consensus 134 psGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 134 PPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SSSSSHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhhh
Confidence 3799999999998754
No 421
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=84.59 E-value=0.43 Score=33.50 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 16 ~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 16 CDSGKTLLFVRLLTG 30 (214)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999865
No 422
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=84.54 E-value=0.47 Score=32.83 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 37 ~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 37 AGVGKSALVVRFLTK 51 (196)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999865
No 423
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=84.53 E-value=0.45 Score=32.25 Aligned_cols=15 Identities=47% Similarity=0.689 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 17 ~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 17 GAVGKTCLLISYTSN 31 (182)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999865
No 424
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=84.53 E-value=0.45 Score=32.18 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 19 ~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 19 SGVGKTCLLVRFKDG 33 (180)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999865
No 425
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=84.50 E-value=0.43 Score=35.55 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
..|+|||||.+.++..
T Consensus 10 ~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 10 QSGLGKSTLVNTLFKS 25 (270)
T ss_dssp SSSSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCC
Confidence 3699999999999865
No 426
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=84.45 E-value=0.44 Score=34.15 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||+|...+.+.
T Consensus 22 ~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 22 QSVGKTSLITRFMYD 36 (216)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHhC
Confidence 699999999998765
No 427
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=84.43 E-value=0.46 Score=32.27 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 15 ~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 15 RSVGKSSLTIQFVEG 29 (181)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999854
No 428
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.41 E-value=0.53 Score=40.24 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=14.7
Q ss_pred ceEeecCCChhhhHHHHHHH
Q 046006 105 KNFKVECLSDNDAWELLRQK 124 (180)
Q Consensus 105 ~~~~l~~L~~~~a~~Lf~~~ 124 (180)
.++.+++++.++-.+++...
T Consensus 655 ~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 655 EIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp EEEECC--CHHHHHHHHHHH
T ss_pred eEEecCCCCHHHHHHHHHHH
Confidence 47889999999988887775
No 429
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=84.34 E-value=0.47 Score=32.92 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
+|+|||||.+.+.+.+
T Consensus 29 ~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 29 RRSGKSSIQKVVFHKM 44 (196)
T ss_dssp TTSSHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHhcC
Confidence 6999999999887753
No 430
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=84.21 E-value=0.45 Score=35.49 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
+||+|||.+|..+++.
T Consensus 112 ppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 112 PATTGKTNIAEAIAHT 127 (267)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhh
Confidence 5899999999999875
No 431
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=84.21 E-value=0.45 Score=32.53 Aligned_cols=15 Identities=40% Similarity=0.652 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 27 ~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 27 DNAGKTTILKKFNGE 41 (186)
T ss_dssp TTSSHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999876
No 432
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=84.17 E-value=0.42 Score=40.10 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=27.5
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVGK 47 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 47 (180)
|||+|||+...++...+ +.. ...+.++..++.....++..+..
T Consensus 213 PPGTGKT~ti~~~I~~l--~~~--~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 213 PPGTGKTTTVVEIILQA--VKQ--GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CTTSCHHHHHHHHHHHH--HHT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH--HhC--CCeEEEEcCchHHHHHHHHHHHh
Confidence 69999998665555443 112 23677777776667777666643
No 433
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=84.15 E-value=0.47 Score=32.66 Aligned_cols=15 Identities=47% Similarity=0.798 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 34 ~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 34 SGVGKTNLLSRFTRN 48 (193)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998875
No 434
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=84.14 E-value=0.5 Score=32.40 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHHc
Q 046006 2 GGVGKTTLLTHINN 15 (180)
Q Consensus 2 gGiGKTtLA~~~~~ 15 (180)
.|+|||||...++.
T Consensus 35 NGsGKStll~ai~~ 48 (182)
T 3kta_A 35 NGSGKSNIGDAILF 48 (182)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999865
No 435
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=83.97 E-value=0.5 Score=33.26 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 37 ~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 37 SQCGKTALLHVFAKD 51 (205)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 799999999999876
No 436
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.97 E-value=0.48 Score=33.27 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 35 ~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 35 AGVGKTCLVRRFTQG 49 (201)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998765
No 437
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=83.87 E-value=0.53 Score=32.35 Aligned_cols=15 Identities=20% Similarity=0.567 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 16 ~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 16 SSVGKSSIVLRLTKD 30 (208)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999876
No 438
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=83.84 E-value=0.51 Score=32.76 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 17 ~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 17 SSVGKTSFLFRYADD 31 (203)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999876
No 439
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=83.79 E-value=0.47 Score=35.28 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS 33 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 33 (180)
||+||||+|..++..+.. .-..++.|...
T Consensus 92 gG~GKTt~a~nLA~~lA~---~G~rVLLID~D 120 (271)
T 3bfv_A 92 PGAGKSTIAANLAVAYAQ---AGYKTLIVDGD 120 (271)
T ss_dssp TTSSHHHHHHHHHHHHHH---TTCCEEEEECC
T ss_pred CCCcHHHHHHHHHHHHHh---CCCeEEEEeCC
Confidence 899999999999887642 22245566543
No 440
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=83.76 E-value=0.53 Score=32.13 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 30 ~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 30 DNAGKTTILYQFSMN 44 (181)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999865
No 441
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=83.75 E-value=0.5 Score=32.77 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 23 ~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 23 GGVGKSALTLQFMYD 37 (206)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999765
No 442
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=83.70 E-value=0.45 Score=37.33 Aligned_cols=16 Identities=31% Similarity=0.212 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHccc
Q 046006 2 GGVGKTTLLTHINNKF 17 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~ 17 (180)
-|+||||+++.+...+
T Consensus 58 dGsGKTT~~~~Lae~L 73 (376)
T 1of1_A 58 HGMGKTTTTQLLVALG 73 (376)
T ss_dssp TTSSHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4999999999999886
No 443
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=83.69 E-value=0.53 Score=32.35 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 25 ~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 25 SGVGKSCLLLRFADD 39 (196)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999876
No 444
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=83.69 E-value=0.54 Score=32.68 Aligned_cols=15 Identities=53% Similarity=0.818 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 17 ~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 17 SGVGKTSLMNQYVNK 31 (207)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999866
No 445
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=83.67 E-value=0.5 Score=32.82 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHHc
Q 046006 2 GGVGKTTLLTHINN 15 (180)
Q Consensus 2 gGiGKTtLA~~~~~ 15 (180)
+|+|||||...+..
T Consensus 15 ~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 15 QGVGKSTLANIFAG 28 (192)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 79999999999874
No 446
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=83.66 E-value=1.3 Score=33.12 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS 33 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 33 (180)
||+||||+|..++..+. ..-..++.|...
T Consensus 102 gG~GKTtva~nLA~~lA---~~G~rVLLID~D 130 (286)
T 3la6_A 102 PSIGMTFVCANLAAVIS---QTNKRVLLIDCD 130 (286)
T ss_dssp SSSSHHHHHHHHHHHHH---TTTCCEEEEECC
T ss_pred CCCcHHHHHHHHHHHHH---hCCCCEEEEecc
Confidence 89999999999988764 222345666644
No 447
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=83.61 E-value=0.51 Score=32.85 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 33 ~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 33 RCVGKTSLAHQFVEG 47 (201)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCcCHHHHHHHHHhC
Confidence 799999999999876
No 448
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=83.55 E-value=0.52 Score=32.36 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 31 ~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 31 SSVGKTSFLFRYADD 45 (189)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999866
No 449
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=83.50 E-value=0.52 Score=32.51 Aligned_cols=15 Identities=47% Similarity=0.663 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 32 ~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 32 GAVGKTCLLLAFSKG 46 (194)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999876
No 450
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=83.41 E-value=0.56 Score=32.36 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 32 ~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 32 TGVGKSSIVCRFVQD 46 (192)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999866
No 451
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=83.36 E-value=0.53 Score=32.41 Aligned_cols=15 Identities=47% Similarity=0.767 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 30 ~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 30 TGVGKSCLLLQFTDK 44 (191)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999865
No 452
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.33 E-value=0.51 Score=37.42 Aligned_cols=17 Identities=41% Similarity=0.696 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||||..++..+
T Consensus 10 ptgsGKttla~~La~~~ 26 (409)
T 3eph_A 10 TTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CSSSSHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHC
Confidence 47999999999998764
No 453
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=83.20 E-value=0.57 Score=32.10 Aligned_cols=15 Identities=40% Similarity=0.771 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 24 ~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 24 SGVGKSSLLLRFTDD 38 (195)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999876
No 454
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=83.13 E-value=0.55 Score=32.28 Aligned_cols=15 Identities=33% Similarity=0.326 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 31 ~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 31 QYSGKTTFVNVIASG 45 (188)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999865
No 455
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.11 E-value=0.58 Score=32.07 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 25 ~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 25 DNAGKTTILYQFSMN 39 (187)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999854
No 456
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=83.07 E-value=0.52 Score=35.58 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHHcccccccCCCCeEEEEEeC
Q 046006 2 GGVGKTTLLTHINNKFLVSSTDFDCVIWIVVS 33 (180)
Q Consensus 2 gGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~ 33 (180)
||+||||+|..++..+.. .-..++.|...
T Consensus 114 gG~GKTtva~nLA~~lA~---~G~rVLLID~D 142 (299)
T 3cio_A 114 PDSGKTFVSSTLAAVIAQ---SDQKVLFIDAD 142 (299)
T ss_dssp SSSCHHHHHHHHHHHHHH---TTCCEEEEECC
T ss_pred CCCChHHHHHHHHHHHHh---CCCcEEEEECC
Confidence 799999999999887642 11235556544
No 457
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=83.05 E-value=0.62 Score=38.94 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=28.3
Q ss_pred CCCCcHHHHHHHHHcccccccCCCCeEEEEEeCCCCCHHHHHHHHH
Q 046006 1 MGGVGKTTLLTHINNKFLVSSTDFDCVIWIVVSKDLQLEKIQEIVG 46 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 46 (180)
++|+|||+++..+...+. ..-...+.++..+......+...+.
T Consensus 203 ppGTGKT~~~~~~i~~l~---~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 203 PPGTGKTVTSATIVYHLA---RQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp CTTSCHHHHHHHHHHHHH---TSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH---HcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 589999998888776642 1123467777666656666666554
No 458
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=82.99 E-value=0.6 Score=32.03 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 29 ~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 29 SNVGKTCLTYRFCAG 43 (189)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999755
No 459
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=82.98 E-value=0.53 Score=32.44 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 26 ~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 26 DNSGKTTIINQVKPA 40 (199)
T ss_dssp TTSCHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999876
No 460
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=82.96 E-value=0.58 Score=32.42 Aligned_cols=15 Identities=40% Similarity=0.689 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 29 ~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 29 GAVGKTSLVVSYTTN 43 (201)
T ss_dssp TTSSHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998865
No 461
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=82.84 E-value=0.57 Score=32.66 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 34 ~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 34 AGTGKSCLLHQFIEN 48 (200)
T ss_dssp TTSSHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998765
No 462
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=82.77 E-value=0.58 Score=32.51 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 37 ~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 37 AAVGKSSFLMRLCKN 51 (199)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999765
No 463
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=82.73 E-value=0.55 Score=35.50 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||.+.++..
T Consensus 27 nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 27 SGLGKSTLINSLFLT 41 (301)
T ss_dssp TTSSHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999998754
No 464
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=82.62 E-value=0.58 Score=36.18 Aligned_cols=17 Identities=29% Similarity=0.552 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.||+|||||+..+...+
T Consensus 87 ~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 87 VPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999987664
No 465
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.60 E-value=0.52 Score=32.45 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 32 ~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 32 SSVGKTSFLFRYADD 46 (191)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHhcC
Confidence 799999999999865
No 466
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=82.60 E-value=0.58 Score=35.38 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||.+.+. ..
T Consensus 173 ~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 173 PSGVGKSSILSRLT-GE 188 (302)
T ss_dssp STTSSHHHHHHHHH-SC
T ss_pred CCCCCHHHHHHHHH-Hh
Confidence 47999999999999 63
No 467
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=82.58 E-value=0.64 Score=32.00 Aligned_cols=15 Identities=53% Similarity=0.729 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 27 ~~~GKssli~~l~~~ 41 (194)
T 2atx_A 27 GAVGKTCLLMSYAND 41 (194)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999865
No 468
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=82.49 E-value=0.59 Score=32.98 Aligned_cols=15 Identities=47% Similarity=0.760 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 43 ~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 43 GGCGKTSLLMVFADG 57 (214)
T ss_dssp TTSSHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999865
No 469
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=82.43 E-value=0.55 Score=32.52 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 38 ~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 38 DAAGKTTILYKLKLG 52 (192)
T ss_dssp TTSSHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999754
No 470
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=82.38 E-value=0.51 Score=32.62 Aligned_cols=15 Identities=40% Similarity=0.762 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 35 ~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 35 RGVGKTSLMERFTDD 49 (192)
T ss_dssp TTSSHHHHHHHHCC-
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999865
No 471
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=82.38 E-value=0.61 Score=32.50 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 17 ~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 17 SGVGKSCLLLRFSDD 31 (206)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999865
No 472
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.37 E-value=0.43 Score=32.43 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 27 ~~~GKssli~~l~~~ 41 (183)
T 1moz_A 27 DGAGKTTILYRLQIG 41 (183)
T ss_dssp TTSSHHHHHHHTCCS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998754
No 473
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=82.36 E-value=0.43 Score=33.28 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHHc
Q 046006 2 GGVGKTTLLTHINN 15 (180)
Q Consensus 2 gGiGKTtLA~~~~~ 15 (180)
+|+|||||...+..
T Consensus 32 ~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 32 SGVGKSTLAGTFGG 45 (195)
T ss_dssp TTSSHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999853
No 474
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=82.36 E-value=0.55 Score=35.39 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.++.-.
T Consensus 72 ~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 72 STGAGKTSLLMMIMGEL 88 (290)
T ss_dssp STTSSHHHHHHHHTTSS
T ss_pred CCCCcHHHHHHHHhcCC
Confidence 36999999999998764
No 475
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=82.27 E-value=0.62 Score=32.63 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 18 ~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 18 GAVGKTCMLICYTSN 32 (212)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999865
No 476
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=82.25 E-value=0.6 Score=36.81 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
++|+|||||.+.++.-
T Consensus 55 psGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 55 RTGSGKSTLLSAFLRL 70 (390)
T ss_dssp STTSSHHHHHHHHHTC
T ss_pred CCCChHHHHHHHHhCC
Confidence 4799999999999864
No 477
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.24 E-value=0.44 Score=36.27 Aligned_cols=16 Identities=63% Similarity=0.802 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
+.|+|||||.+.+...
T Consensus 12 ~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 12 FLGAGKTTLLRHILNE 27 (318)
T ss_dssp SSSSSCHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHhh
Confidence 4699999999999865
No 478
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=82.11 E-value=0.59 Score=33.35 Aligned_cols=15 Identities=20% Similarity=0.490 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 38 ~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 38 PNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSSHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999876
No 479
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=82.06 E-value=0.64 Score=32.55 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 34 ~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 34 GACGKTCLLIVFSKD 48 (207)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999875
No 480
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=82.00 E-value=0.64 Score=32.43 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 38 ~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 38 ASVGKTCVVQRFKTG 52 (201)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhhC
Confidence 699999999999765
No 481
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.96 E-value=0.65 Score=31.97 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 17 ~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 17 GGVGKSSLVLRFVKG 31 (199)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHcC
Confidence 699999999999864
No 482
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=81.92 E-value=0.68 Score=32.40 Aligned_cols=15 Identities=47% Similarity=0.680 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 39 ~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 39 GAVGKTCLLISYTTN 53 (204)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 799999999998865
No 483
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=81.84 E-value=1.1 Score=35.94 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||.+.++...
T Consensus 165 ~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 165 GSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhccc
Confidence 37999999999998874
No 484
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=81.79 E-value=0.65 Score=33.10 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHc
Q 046006 2 GGVGKTTLLTHINN 15 (180)
Q Consensus 2 gGiGKTtLA~~~~~ 15 (180)
+|+|||||...+..
T Consensus 46 ~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 46 QGVGKSTLANIFAG 59 (211)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHh
Confidence 79999999999874
No 485
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=81.77 E-value=0.31 Score=34.10 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
.+|+|||||.+.+...
T Consensus 34 ~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 34 RSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CTTSSHHHHHTTTCCC
T ss_pred CCCCCHHHHHHHHhCC
Confidence 3799999999998765
No 486
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=81.63 E-value=0.63 Score=37.27 Aligned_cols=17 Identities=35% Similarity=0.438 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||+++..+...+
T Consensus 53 ~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 53 PAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 37999999999998875
No 487
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=81.60 E-value=0.75 Score=32.32 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 34 ~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 34 SGVGKTTFLYRYTDN 48 (217)
T ss_dssp TTSSHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999865
No 488
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=81.57 E-value=0.68 Score=34.17 Aligned_cols=15 Identities=33% Similarity=0.514 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 12 ~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 12 PNVGKTTIFNALTGL 26 (271)
T ss_dssp SSSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhCC
Confidence 799999999999865
No 489
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=81.53 E-value=0.75 Score=33.13 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHHcc
Q 046006 1 MGGVGKTTLLTHINNK 16 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~ 16 (180)
.+|+|||||...+...
T Consensus 37 ~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 37 KTGAGKSATGNSILGR 52 (239)
T ss_dssp CTTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHcCC
Confidence 3799999999999876
No 490
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=81.51 E-value=0.69 Score=32.21 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 34 ~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 34 GACGKTCLLIVFSKD 48 (201)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999875
No 491
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=81.50 E-value=0.62 Score=38.38 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
++|+||||+|+.+...+
T Consensus 380 ~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 380 LPCAGKSTIAEILATML 396 (546)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 47999999999998875
No 492
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=81.41 E-value=1 Score=37.28 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||++.+..-+
T Consensus 377 ~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 377 RSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 36999999999998664
No 493
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.17 E-value=0.71 Score=32.20 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 29 ~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 29 SGVGKSCLLVRFVED 43 (213)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999865
No 494
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=80.99 E-value=0.5 Score=32.48 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+...
T Consensus 30 ~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 30 DNSGKTTIINKLKPS 44 (190)
T ss_dssp TTSSHHHHHHHTSCG
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999876
No 495
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=80.98 E-value=0.65 Score=39.63 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=15.0
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||++|+.+++..
T Consensus 496 ~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 496 PTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHh
Confidence 47999999999998874
No 496
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=80.93 E-value=0.71 Score=35.73 Aligned_cols=17 Identities=53% Similarity=0.567 Sum_probs=14.8
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||.+.+.+..
T Consensus 79 ~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 79 GSGVGKSTLLGMICNGA 95 (347)
T ss_dssp CTTSSHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHhcCC
Confidence 36999999999999884
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=80.78 E-value=0.78 Score=32.41 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHHcc
Q 046006 2 GGVGKTTLLTHINNK 16 (180)
Q Consensus 2 gGiGKTtLA~~~~~~ 16 (180)
+|+|||||...+.+.
T Consensus 36 ~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 36 VQCGKTAMLQVLAKD 50 (214)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999765
No 498
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=80.75 E-value=0.63 Score=33.65 Aligned_cols=17 Identities=12% Similarity=0.179 Sum_probs=14.9
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
+.|+||||+|+.++..+
T Consensus 22 ~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 22 EYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CTTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc
Confidence 47999999999998875
No 499
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=80.56 E-value=0.77 Score=35.76 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
.+|+|||||.+.+....
T Consensus 223 ~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 223 QSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp CTTSSHHHHHHHHHCCS
T ss_pred CCCccHHHHHHHHhccc
Confidence 47999999999998764
No 500
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=80.51 E-value=1.2 Score=36.85 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHHccc
Q 046006 1 MGGVGKTTLLTHINNKF 17 (180)
Q Consensus 1 mgGiGKTtLA~~~~~~~ 17 (180)
..|+|||||++.++.-+
T Consensus 377 ~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 377 RSGSGKSTIASLITRFY 393 (582)
T ss_dssp CTTSSHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHhhcc
Confidence 36999999999998764
Done!