BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046008
(1624 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo-
(+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo-
(-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (-)-Trans-
2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 253 bits (647), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 186/314 (59%), Gaps = 21/314 (6%)
Query: 1051 LSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGFGGAHCMIKGGYSTVVEALG 1110
LS +R+++DWHFANLE+ A L +SL W+QDD + F G+H ++ GYS V AL
Sbjct: 521 LSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFE-FTGSHLTVRNGYSCVPVALA 579
Query: 1111 KELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAE--S 1168
+ L I N V + Y+ ++ +R STS + DAVL T+PLG LK + +
Sbjct: 580 EGLDIKLNTAVRQVRYTASGCEVIAVNTR---STSQTFIYKCDAVLCTLPLGVLKQQPPA 636
Query: 1169 IMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN 1228
+ F PPLP+WK SA+QR+GFG LNKVVL F VFWD +V+ FG T RG F+FWN
Sbjct: 637 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN 696
Query: 1229 VRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGXXXXXXXXXXXXTDWGR 1288
+ K AP+L+ALV G+AA +N+S V + +L+ IFG + W
Sbjct: 697 LYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRA 753
Query: 1289 DPFSYGAYSYVATGASGEDYDILGRPVENC------------LFFAGEATCKEHPDTVGG 1336
DP++ G+YSYVA G+SG DYD++ +P+ LFFAGE T + +P TV G
Sbjct: 754 DPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHG 813
Query: 1337 AMLSGLREAVRIID 1350
A+LSGLREA RI D
Sbjct: 814 ALLSGLREAGRIAD 827
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 76/126 (60%), Gaps = 10/126 (7%)
Query: 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVE 922
++I+IG+G +GL AAR LQ G VT+LEAR+R+GGRV T R V DLGA ++TG+
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYV-ADLGAMVVTGLG 338
Query: 923 ADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAEFNSLLDDM 982
+P ++V Q+ +EL + CPLY+ +GQ VP DE +E EFN LL+
Sbjct: 339 --------GNPMAVVSKQVNMELAKIKQKCPLYE-ANGQAVPKEKDEMVEQEFNRLLEAT 389
Query: 983 VLLVAQ 988
L Q
Sbjct: 390 SYLSHQ 395
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 252 bits (644), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 186/314 (59%), Gaps = 21/314 (6%)
Query: 1051 LSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGFGGAHCMIKGGYSTVVEALG 1110
LS +R+++DWHFANLE+ A L +SL W+QDD + F G+H ++ GYS V AL
Sbjct: 403 LSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFE-FTGSHLTVRNGYSCVPVALA 461
Query: 1111 KELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAE--S 1168
+ L I N V + Y+ ++ +R STS + DAVL T+PLG LK + +
Sbjct: 462 EGLDIKLNTAVRQVRYTASGCEVIAVNTR---STSQTFIYKCDAVLCTLPLGVLKQQPPA 518
Query: 1169 IMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN 1228
+ F PPLP+WK SA+QR+GFG LNKVVL F VFWD +V+ FG T RG F+FWN
Sbjct: 519 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN 578
Query: 1229 VRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGXXXXXXXXXXXXTDWGR 1288
+ K AP+L+ALV G+AA +N+S V + +L+ IFG + W
Sbjct: 579 LYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRA 635
Query: 1289 DPFSYGAYSYVATGASGEDYDILGRPVENC------------LFFAGEATCKEHPDTVGG 1336
DP++ G+YSYVA G+SG DYD++ +P+ LFFAGE T + +P TV G
Sbjct: 636 DPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHG 695
Query: 1337 AMLSGLREAVRIID 1350
A+LSGLREA RI D
Sbjct: 696 ALLSGLREAGRIAD 709
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 14/122 (11%)
Query: 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVE 922
++I+IG+G +GL AAR LQ G VT+LEAR+R+GGRV T R V DLGA ++TG+
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYV-ADLGAMVVTGLG 216
Query: 923 ADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQ----KVPANVDEALEAEFNSL 978
+P ++V Q+ +EL + CPLY+ +GQ KVP DE +E EFN L
Sbjct: 217 --------GNPMAVVSKQVNMELAKIKQKCPLYE-ANGQADTVKVPKEKDEMVEQEFNRL 267
Query: 979 LD 980
L+
Sbjct: 268 LE 269
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 252 bits (644), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 186/314 (59%), Gaps = 21/314 (6%)
Query: 1051 LSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGFGGAHCMIKGGYSTVVEALG 1110
LS +R+++DWHFANLE+ A L +SL W+QDD + F G+H ++ GYS V AL
Sbjct: 399 LSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFE-FTGSHLTVRNGYSCVPVALA 457
Query: 1111 KELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAE--S 1168
+ L I N V + Y+ ++ +R STS + DAVL T+PLG LK + +
Sbjct: 458 EGLDIKLNTAVRQVRYTASGCEVIAVNTR---STSQTFIYKCDAVLCTLPLGVLKQQPPA 514
Query: 1169 IMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN 1228
+ F PPLP+WK SA+QR+GFG LNKVVL F VFWD +V+ FG T RG F+FWN
Sbjct: 515 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN 574
Query: 1229 VRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGXXXXXXXXXXXXTDWGR 1288
+ K AP+L+ALV G+AA +N+S V + +L+ IFG + W
Sbjct: 575 LYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRA 631
Query: 1289 DPFSYGAYSYVATGASGEDYDILGRPVENC------------LFFAGEATCKEHPDTVGG 1336
DP++ G+YSYVA G+SG DYD++ +P+ LFFAGE T + +P TV G
Sbjct: 632 DPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHG 691
Query: 1337 AMLSGLREAVRIID 1350
A+LSGLREA RI D
Sbjct: 692 ALLSGLREAGRIAD 705
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 10/118 (8%)
Query: 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVE 922
++I+IG+G +GL AAR LQ G VT+LEAR+R+GGRV T R V DLGA ++TG+
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYV-ADLGAMVVTGLG 216
Query: 923 ADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAEFNSLLD 980
+P ++V Q+ +EL + CPLY+ +GQ VP DE +E EFN LL+
Sbjct: 217 --------GNPMAVVSKQVNMELAKIKQKCPLYE-ANGQAVPKEKDEMVEQEFNRLLE 265
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 251 bits (642), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 186/314 (59%), Gaps = 21/314 (6%)
Query: 1051 LSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGFGGAHCMIKGGYSTVVEALG 1110
LS +R+++DWHFANLE+ A L +SL W+QDD + F G+H ++ GYS V AL
Sbjct: 350 LSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFE-FTGSHLTVRNGYSCVPVALA 408
Query: 1111 KELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAE--S 1168
+ L I N V + Y+ ++ +R STS + DAVL T+PLG LK + +
Sbjct: 409 EGLDIKLNTAVRQVQYTASGCEVIAVNTR---STSQTFIYKCDAVLCTLPLGVLKQQPPA 465
Query: 1169 IMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN 1228
+ F PPLP+WK SA+QR+GFG LNKVVL F VFWD +V+ FG T RG F+FWN
Sbjct: 466 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN 525
Query: 1229 VRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGXXXXXXXXXXXXTDWGR 1288
+ K AP+L+ALV G+AA +N+S V + +L+ IFG + W
Sbjct: 526 LYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRA 582
Query: 1289 DPFSYGAYSYVATGASGEDYDILGRPVENC------------LFFAGEATCKEHPDTVGG 1336
DP++ G+YSYVA G+SG DYD++ +P+ LFFAGE T + +P TV G
Sbjct: 583 DPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHG 642
Query: 1337 AMLSGLREAVRIID 1350
A+LSGLREA RI D
Sbjct: 643 ALLSGLREAGRIAD 656
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 10/118 (8%)
Query: 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVE 922
++I+IG+G +GL AAR LQ G VT+LEAR+R+GGRV T R V DLGA ++TG+
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYV-ADLGAMVVTGLG 167
Query: 923 ADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAEFNSLLD 980
+P ++V Q+ +EL + CPLY+ +GQ VP DE +E EFN LL+
Sbjct: 168 --------GNPMAVVSKQVNMELAKIKQKCPLYE-ANGQAVPKEKDEMVEQEFNRLLE 216
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 251 bits (642), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 186/314 (59%), Gaps = 21/314 (6%)
Query: 1051 LSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGFGGAHCMIKGGYSTVVEALG 1110
LS +R+++DWHFANLE+ A L +SL W+QDD + F G+H ++ GYS V AL
Sbjct: 351 LSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFE-FTGSHLTVRNGYSCVPVALA 409
Query: 1111 KELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAE--S 1168
+ L I N V + Y+ ++ +R STS + DAVL T+PLG LK + +
Sbjct: 410 EGLDIKLNTAVRQVRYTASGCEVIAVNTR---STSQTFIYKCDAVLCTLPLGVLKQQPPA 466
Query: 1169 IMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN 1228
+ F PPLP+WK SA+QR+GFG LNKVVL F VFWD +V+ FG T RG F+FWN
Sbjct: 467 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN 526
Query: 1229 VRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGXXXXXXXXXXXXTDWGR 1288
+ K AP+L+ALV G+AA +N+S V + +L+ IFG + W
Sbjct: 527 LYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRA 583
Query: 1289 DPFSYGAYSYVATGASGEDYDILGRPVENC------------LFFAGEATCKEHPDTVGG 1336
DP++ G+YSYVA G+SG DYD++ +P+ LFFAGE T + +P TV G
Sbjct: 584 DPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHG 643
Query: 1337 AMLSGLREAVRIID 1350
A+LSGLREA RI D
Sbjct: 644 ALLSGLREAGRIAD 657
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 10/118 (8%)
Query: 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVE 922
++I+IG+G +GL AAR LQ G VT+LEAR+R+GGRV T R V DLGA ++TG+
Sbjct: 110 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYV-ADLGAMVVTGLG 168
Query: 923 ADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAEFNSLLD 980
+P ++V Q+ +EL + CPLY+ +GQ VP DE +E EFN LL+
Sbjct: 169 --------GNPMAVVSKQVNMELAKIKQKCPLYE-ANGQAVPKEKDEMVEQEFNRLLE 217
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 251 bits (642), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 186/314 (59%), Gaps = 21/314 (6%)
Query: 1051 LSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGFGGAHCMIKGGYSTVVEALG 1110
LS +R+++DWHFANLE+ A L +SL W+QDD + F G+H ++ GYS V AL
Sbjct: 350 LSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFE-FTGSHLTVRNGYSCVPVALA 408
Query: 1111 KELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAE--S 1168
+ L I N V + Y+ ++ +R STS + DAVL T+PLG LK + +
Sbjct: 409 EGLDIKLNTAVRQVRYTASGCEVIAVNTR---STSQTFIYKCDAVLCTLPLGVLKQQPPA 465
Query: 1169 IMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN 1228
+ F PPLP+WK SA+QR+GFG LNKVVL F VFWD +V+ FG T RG F+FWN
Sbjct: 466 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN 525
Query: 1229 VRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGXXXXXXXXXXXXTDWGR 1288
+ K AP+L+ALV G+AA +N+S V + +L+ IFG + W
Sbjct: 526 LYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRA 582
Query: 1289 DPFSYGAYSYVATGASGEDYDILGRPVENC------------LFFAGEATCKEHPDTVGG 1336
DP++ G+YSYVA G+SG DYD++ +P+ LFFAGE T + +P TV G
Sbjct: 583 DPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHG 642
Query: 1337 AMLSGLREAVRIID 1350
A+LSGLREA RI D
Sbjct: 643 ALLSGLREAGRIAD 656
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 10/118 (8%)
Query: 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVE 922
++I+IG+G +GL AAR LQ G VT+LEAR+R+GGRV T R V DLGA ++TG+
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYV-ADLGAMVVTGLG 167
Query: 923 ADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAEFNSLLD 980
+P ++V Q+ +EL + CPLY+ +GQ VP DE +E EFN LL+
Sbjct: 168 --------GNPMAVVSKQVNMELAKIKQKCPLYE-ANGQAVPKEKDEMVEQEFNRLLE 216
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 251 bits (641), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 186/314 (59%), Gaps = 21/314 (6%)
Query: 1051 LSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGFGGAHCMIKGGYSTVVEALG 1110
LS +R+++DWHFANLE+ A L +SL W+QDD + F G+H ++ GYS V AL
Sbjct: 350 LSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFE-FTGSHLTVRNGYSCVPVALA 408
Query: 1111 KELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAE--S 1168
+ L I N V + Y+ ++ +R STS + DAVL T+PLG LK + +
Sbjct: 409 EGLDIKLNTAVRQVRYTASGCEVIAVNTR---STSQTFIYKCDAVLCTLPLGVLKQQPPA 465
Query: 1169 IMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN 1228
+ F PPLP+WK SA+QR+GFG LNKVVL F VFWD +V+ FG T RG F+FWN
Sbjct: 466 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN 525
Query: 1229 VRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGXXXXXXXXXXXXTDWGR 1288
+ K AP+L+ALV G+AA +N+S V + +L+ IFG + W
Sbjct: 526 LYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRA 582
Query: 1289 DPFSYGAYSYVATGASGEDYDILGRPVENC------------LFFAGEATCKEHPDTVGG 1336
DP++ G+YSYVA G+SG DYD++ +P+ LFFAGE T + +P TV G
Sbjct: 583 DPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHG 642
Query: 1337 AMLSGLREAVRIID 1350
A+LSGLREA RI D
Sbjct: 643 ALLSGLREAGRIAD 656
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 10/118 (8%)
Query: 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVE 922
++I+IG+G +GL AAR LQ G VT+LEAR+R+GGRV T R V DLGA ++TG+
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYV-ADLGAMVVTGLG 167
Query: 923 ADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAEFNSLLD 980
+P ++V Q+ +EL + CPLY+ +GQ VP DE +E EFN LL+
Sbjct: 168 --------GNPMAVVSKQVNMELAKIKQKCPLYE-ANGQAVPKEKDEMVEQEFNRLLE 216
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 251 bits (641), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 186/314 (59%), Gaps = 21/314 (6%)
Query: 1051 LSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGFGGAHCMIKGGYSTVVEALG 1110
LS +R+++DWHFANLE+ A L +SL W+QDD + F G+H ++ GYS V AL
Sbjct: 350 LSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFE-FTGSHLTVRNGYSCVPVALA 408
Query: 1111 KELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAE--S 1168
+ L I N V + Y+ ++ +R STS + DAVL T+PLG LK + +
Sbjct: 409 EGLDIKLNTAVRQVRYTASGCEVIAVNTR---STSQTFIYKCDAVLCTLPLGVLKQQPPA 465
Query: 1169 IMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN 1228
+ F PPLP+WK SA+QR+GFG LNKVVL F VFWD +V+ FG T RG F+FWN
Sbjct: 466 VQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFWN 525
Query: 1229 VRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGXXXXXXXXXXXXTDWGR 1288
+ K AP+L+ALV G+AA +N+S V + +L+ IFG + W
Sbjct: 526 LYK---APILLALVAGEAAGIMENISDDVIVGRCLAILKGIFGSSAVPQPKETVVSRWRA 582
Query: 1289 DPFSYGAYSYVATGASGEDYDILGRPVENC------------LFFAGEATCKEHPDTVGG 1336
DP++ G+YSYVA G+SG DYD++ +P+ LFFAGE T + +P TV G
Sbjct: 583 DPWARGSYSYVAAGSSGNDYDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHG 642
Query: 1337 AMLSGLREAVRIID 1350
A+LSGLREA RI D
Sbjct: 643 ALLSGLREAGRIAD 656
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 74/118 (62%), Gaps = 10/118 (8%)
Query: 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVE 922
++I+IG+G +GL AAR LQ G VT+LEAR+R+GGRV T R V DLGA ++TG+
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYV-ADLGAMVVTGLG 167
Query: 923 ADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAEFNSLLD 980
+P ++V Q+ +EL + CPLY+ +GQ VP DE +E EFN LL+
Sbjct: 168 --------GNPMAVVSKQVNMELAKIKQKCPLYE-ANGQAVPKEKDEMVEQEFNRLLE 216
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of C2221
At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222 At
2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222 At
2.9a
Length = 796
Score = 235 bits (599), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 162/505 (32%), Positives = 251/505 (49%), Gaps = 58/505 (11%)
Query: 848 AGENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSL 907
G + YL K +I+IGAGPAGL AAR L G VTVLEA++RIGGRV+ D++
Sbjct: 343 VGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFK 402
Query: 908 SVPVDLGASIITGVEADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP-AN 966
V V GA I+ G +P +L+C QLG+ + C L I G ++
Sbjct: 403 GVTVGRGAQIVNGC--------INNPVALMCEQLGISMHKFGERCDL--IQEGGRITDPT 452
Query: 967 VDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYXXXXXXXXXXXXXXEDASMHNS 1026
+D+ ++ FN+LLD +V++ + ++ +D +
Sbjct: 453 IDKRMDFHFNALLD----VVSEWRKDKTQL----------------------QDVPLGEK 486
Query: 1027 MDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDD 1086
++ K +S + S +E +V+ +H +NLEY C + L +VS W+ ++
Sbjct: 487 IEEIYKAFIKESGIQ---------FSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNE 537
Query: 1087 VYGGFGGAHCMIKGGYSTVVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSN 1146
+ F G H ++ GYS ++E L + L I V I YS V+V+T++
Sbjct: 538 FFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYS---------GDEVQVTTTD 588
Query: 1147 GSEFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDT 1206
G+ +S VL+TVPL L+ +I F+PPL + K AI LG G++ K+ L+F FWD
Sbjct: 589 GTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSK 648
Query: 1207 V---DYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAV 1263
V D+FG RG +F+++ VL++++ G+A + + + +
Sbjct: 649 VQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCM 708
Query: 1264 MVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAG 1323
LR++F T W DP+ AYS+V TG SGE YDI+ ++ +FFAG
Sbjct: 709 ATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAG 768
Query: 1324 EATCKEHPDTVGGAMLSGLREAVRI 1348
EAT + P TV GA LSG+REA +I
Sbjct: 769 EATNRHFPQTVTGAYLSGVREASKI 793
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 234 bits (596), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 162/505 (32%), Positives = 251/505 (49%), Gaps = 58/505 (11%)
Query: 848 AGENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSL 907
G + YL K +I+IGAGPAGL AAR L G VTVLEA++RIGGRV+ D++
Sbjct: 331 VGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFK 390
Query: 908 SVPVDLGASIITGVEADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP-AN 966
V V GA I+ G +P +L+C QLG+ + C L I G ++
Sbjct: 391 GVTVGRGAQIVNGC--------INNPVALMCEQLGISMHKFGERCDL--IQEGGRITDPT 440
Query: 967 VDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYXXXXXXXXXXXXXXEDASMHNS 1026
+D+ ++ FN+LLD +V++ + ++ +D +
Sbjct: 441 IDKRMDFHFNALLD----VVSEWRKDKTQL----------------------QDVPLGEK 474
Query: 1027 MDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDD 1086
++ K +S + S +E +V+ +H +NLEY C + L +VS W+ ++
Sbjct: 475 IEEIYKAFIKESGIQ---------FSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNE 525
Query: 1087 VYGGFGGAHCMIKGGYSTVVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSN 1146
+ F G H ++ GYS ++E L + L I V I YS V+V+T++
Sbjct: 526 FFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYS---------GDEVQVTTTD 576
Query: 1147 GSEFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDT 1206
G+ +S VL+TVPL L+ +I F+PPL + K AI LG G++ K+ L+F FWD
Sbjct: 577 GTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSK 636
Query: 1207 V---DYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAV 1263
V D+FG RG +F+++ VL++++ G+A + + + +
Sbjct: 637 VQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCM 696
Query: 1264 MVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAG 1323
LR++F T W DP+ AYS+V TG SGE YDI+ ++ +FFAG
Sbjct: 697 ATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAG 756
Query: 1324 EATCKEHPDTVGGAMLSGLREAVRI 1348
EAT + P TV GA LSG+REA +I
Sbjct: 757 EATNRHFPQTVTGAYLSGVREASKI 781
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 233 bits (595), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 162/505 (32%), Positives = 251/505 (49%), Gaps = 58/505 (11%)
Query: 848 AGENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSL 907
G + YL K +I+IGAGPAGL AAR L G VTVLEA++RIGGRV+ D++
Sbjct: 323 VGADQYLLPKDYHNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFK 382
Query: 908 SVPVDLGASIITGVEADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP-AN 966
V V GA I+ G +P +L+C QLG+ + C L I G ++
Sbjct: 383 GVTVGRGAQIVNGC--------INNPVALMCEQLGISMHKFGERCDL--IQEGGRITDPT 432
Query: 967 VDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYXXXXXXXXXXXXXXEDASMHNS 1026
+D+ ++ FN+LLD +V++ + ++ +D +
Sbjct: 433 IDKRMDFHFNALLD----VVSEWRKDKTQL----------------------QDVPLGEK 466
Query: 1027 MDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDD 1086
++ K +S + S +E +V+ +H +NLEY C + L +VS W+ ++
Sbjct: 467 IEEIYKAFIKESGIQ---------FSELEGQVLQFHLSNLEYACGSNLHQVSARSWDHNE 517
Query: 1087 VYGGFGGAHCMIKGGYSTVVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSN 1146
+ F G H ++ GYS ++E L + L I V I YS V+V+T++
Sbjct: 518 FFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPVQCIDYS---------GDEVQVTTTD 568
Query: 1147 GSEFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDT 1206
G+ +S VL+TVPL L+ +I F+PPL + K AI LG G++ K+ L+F FWD
Sbjct: 569 GTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFWDSK 628
Query: 1207 V---DYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAV 1263
V D+FG RG +F+++ VL++++ G+A + + + +
Sbjct: 629 VQGADFFGHVPPSASKRGLFAVFYDMDPQKKHSVLMSVIAGEAVASVRTLDDKQVLQQCM 688
Query: 1264 MVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAG 1323
LR++F T W DP+ AYS+V TG SGE YDI+ ++ +FFAG
Sbjct: 689 ATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSFVKTGGSGEAYDIIAEDIQGTVFFAG 748
Query: 1324 EATCKEHPDTVGGAMLSGLREAVRI 1348
EAT + P TV GA LSG+REA +I
Sbjct: 749 EATNRHFPQTVTGAYLSGVREASKI 773
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 109/265 (41%), Gaps = 27/265 (10%)
Query: 1101 GYSTVVEALGKELL-------------IHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNG 1147
GY VV L + L + N VV +I YS V V T +
Sbjct: 204 GYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS---------PGGVTVKTEDN 254
Query: 1148 SEFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTV 1207
S +S D V+++ LG L+++ I F P LP WK AI + V K+ L+F FW +
Sbjct: 255 SVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGK 314
Query: 1208 --DYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMV 1265
++F + G F ++ A VL+ V + + + S + V
Sbjct: 315 GREFFLYASSRRGYYGVWQEF--EKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQV 372
Query: 1266 LRQIFGXXXXXXXXXXXXTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAGEA 1325
LR++F W D F G +S G + +YD L PV ++F GE
Sbjct: 373 LRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPV-GRVYFTGEH 431
Query: 1326 TCKEHPDTVGGAMLSGLREAVRIID 1350
T + + V GA LSG+ A +I+
Sbjct: 432 TSEHYNGYVHGAYLSGIDSAEILIN 456
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 45/64 (70%), Gaps = 4/64 (6%)
Query: 860 VKKRIIVIGAGPAGLTAARHLQRQGFS-VTVLEARNRIGGRVYTDRTSLS-VPVDLGASI 917
V R+IV+GAG +G++AA+ L G + + +LEA + IGGR++ +T+ + + V+LGA+
Sbjct: 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH--KTNFAGINVELGANW 60
Query: 918 ITGV 921
+ GV
Sbjct: 61 VEGV 64
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase
From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase
From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase
From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase
From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase
From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine Oxidase
From Zea Mays In Complex With Spermidine
Length = 478
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 108/265 (40%), Gaps = 27/265 (10%)
Query: 1101 GYSTVVEALGKELL-------------IHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNG 1147
GY VV L + L + N VV +I YS V V T +
Sbjct: 204 GYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS---------PGGVTVKTEDN 254
Query: 1148 SEFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTV 1207
S +S D V+++ LG L+++ I F P LP WK AI + V + L+F FW +
Sbjct: 255 SVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTMIFLKFPRKFWPEGK 314
Query: 1208 --DYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMV 1265
++F + G F ++ A VL+ V + + + S + V
Sbjct: 315 GREFFLYASSRRGYYGVWQEF--EKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQV 372
Query: 1266 LRQIFGXXXXXXXXXXXXTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAGEA 1325
LR++F W D F G +S G + +YD L PV ++F GE
Sbjct: 373 LRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPV-GRVYFTGEH 431
Query: 1326 TCKEHPDTVGGAMLSGLREAVRIID 1350
T + + V GA LSG+ A +I+
Sbjct: 432 TSEHYNGYVHGAYLSGIDSAEILIN 456
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 45/64 (70%), Gaps = 4/64 (6%)
Query: 860 VKKRIIVIGAGPAGLTAARHLQRQGFS-VTVLEARNRIGGRVYTDRTSLS-VPVDLGASI 917
V R+IV+GAG +G++AA+ L G + + +LEA + IGGR++ +T+ + + V+LGA+
Sbjct: 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMH--KTNFAGINVELGANW 60
Query: 918 ITGV 921
+ GV
Sbjct: 61 VEGV 64
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 38/45 (84%)
Query: 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903
++ + ++++GAGP+GLTAAR L++ G SV VLEAR+R+GGR +TD
Sbjct: 5 NLDRDVVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTD 49
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 24/141 (17%)
Query: 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIIT 919
+++ + ++GAGP+GL AA L++ G SV V+EAR+R+GGR +TD +V +++G ++
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAV-LEIGGQWVS 62
Query: 920 GVEADVATERRADPSSLVCA--QLGLEL--------TVLNSDCPLYDIVSGQKVPANVDE 969
D ++L+ +LGL+ +V S +G P N E
Sbjct: 63 -----------PDQTALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTN--E 109
Query: 970 ALEAEFNSLLDDMVLLVAQKG 990
+ E + L+D+M L AQ G
Sbjct: 110 TTKKEMDRLIDEMDDLAAQIG 130
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 1105 VVEALGKELLIHHNHVVTDISYSFKDSD-LSDGQSRVKVSTSNGSEFSGDAVLITVPLGC 1163
+ EALG ++ + N V + ++ + L+DG RV+ S V++ VP
Sbjct: 221 MAEALGDDVFL--NAPVRTVKWNESGATVLADGDIRVEASR----------VILAVPPNL 268
Query: 1164 LKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFW 1203
I + PPLP+ ++ Q G++ KV + FW
Sbjct: 269 YS--RISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 24/141 (17%)
Query: 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIIT 919
+++ + ++GAGP+GL AA L++ G SV V+EAR+R+GGR +TD +V +++G ++
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAV-LEIGGQWVS 62
Query: 920 GVEADVATERRADPSSLVCA--QLGLEL--------TVLNSDCPLYDIVSGQKVPANVDE 969
D ++L+ +LGL+ +V S +G P N E
Sbjct: 63 -----------PDQTALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTN--E 109
Query: 970 ALEAEFNSLLDDMVLLVAQKG 990
+ E + L+D+M L AQ G
Sbjct: 110 TTKKEMDRLIDEMDDLAAQIG 130
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 1105 VVEALGKELLIHHNHVVTDISYSFKDSD-LSDGQSRVKVSTSNGSEFSGDAVLITVPLGC 1163
+ EALG ++ + N V + ++ + L+DG RV+ S V++ VP
Sbjct: 221 MAEALGDDVFL--NAPVRTVKWNESGATVLADGDIRVEASR----------VILAVPPNL 268
Query: 1164 LKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFW 1203
I + PPLP+ ++ Q G++ KV + FW
Sbjct: 269 YS--RISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 24/141 (17%)
Query: 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIIT 919
+++ + ++GAGP+GL AA L++ G SV V+EAR+R+GGR +TD +V +++G ++
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAV-LEIGGQWVS 62
Query: 920 GVEADVATERRADPSSLVCA--QLGLEL--------TVLNSDCPLYDIVSGQKVPANVDE 969
D ++L+ +LGL+ +V S +G P N E
Sbjct: 63 -----------PDQTALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTN--E 109
Query: 970 ALEAEFNSLLDDMVLLVAQKG 990
+ E + L+D+M L AQ G
Sbjct: 110 TTKKEMDRLIDEMDDLAAQIG 130
Score = 31.2 bits (69), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 1105 VVEALGKELLIHHNHVVTDISYSFKDSD-LSDGQSRVKVSTSNGSEFSGDAVLITVPLGC 1163
+ EALG ++ + N V + ++ + L+DG RV+ S V++ VP
Sbjct: 221 MAEALGDDVFL--NAPVRTVKWNESGATVLADGDIRVEASR----------VILAVPPNL 268
Query: 1164 LKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFW 1203
I + PPLP+ ++ Q G++ KV + FW
Sbjct: 269 YS--RISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEA 923
++VIG G +GL+AA+ L G SV VLEAR+R+GGR YT R VD+G + + +
Sbjct: 16 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 75
Query: 924 DVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ + +LG+E +N L V G+ P
Sbjct: 76 RILR---------LSKELGIETYKVNVSERLVQYVKGKTYP 107
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 101/249 (40%), Gaps = 16/249 (6%)
Query: 1105 VVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCL 1164
+++ LG ++ + NH VT + S SD + + T N + V+ +P L
Sbjct: 230 IMDLLGDQVKL--NHPVTHVDQS------SDN---IIIETLNHEHYECKYVINAIP-PTL 277
Query: 1165 KAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCF 1224
A+ I F P LP + IQRL G + K ++ + E FW DY G E +
Sbjct: 278 TAK-IHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKK-DYCGCMIIEDEDAPISI 335
Query: 1225 MFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGXXXXXXXXXXXXT 1284
+ + P ++ ++ + A + + ++ G
Sbjct: 336 TLDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEK 395
Query: 1285 DWGRDPFSYGAYS-YVATGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLR 1343
+W + +S G Y+ Y G + ++ +PV +FFAG T + + GA+ +G R
Sbjct: 396 NWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGR-IFFAGTETATKWSGYMEGAVEAGER 454
Query: 1344 EAVRIIDIL 1352
A +++ L
Sbjct: 455 AAREVLNGL 463
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEA 923
++VIG G +GL+AA+ L G SV VLEAR+R+GGR YT R VD+G + + +
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 924 DVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ + +LG+E +N L V G+ P
Sbjct: 65 RILR---------LSKELGIETYKVNVSERLVQYVKGKTYP 96
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 16/247 (6%)
Query: 1105 VVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCL 1164
+++ LG ++ + NH VT + S SD + + T N + V+ +P L
Sbjct: 219 IMDLLGDQVKL--NHPVTHVDQS------SDN---IIIETLNHEHYECKYVINAIP-PTL 266
Query: 1165 KAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCF 1224
A+ I F P LP + IQRL G + K ++ + E FW DY G E +
Sbjct: 267 TAK-IHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKK-DYCGCMIIEDEDAPISI 324
Query: 1225 MFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGXXXXXXXXXXXXT 1284
+ + P ++ ++ + A + + ++ G
Sbjct: 325 TLDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEK 384
Query: 1285 DWGRDPFSYGAYS-YVATGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLR 1343
+W + +S G Y+ Y G + ++ +PV +FFAG T + + GA+ +G R
Sbjct: 385 NWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGR-IFFAGTETATKWSGYMEGAVEAGER 443
Query: 1344 EAVRIID 1350
A +++
Sbjct: 444 AAREVLN 450
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEA 923
++VIG G +GL+AA+ L G SV VLEAR+R+GGR YT R VD+G + + +
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 924 DVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ + +LG+E +N L V G+ P
Sbjct: 65 RILR---------LSKELGIETYKVNVSERLVQYVKGKTYP 96
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 16/247 (6%)
Query: 1105 VVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCL 1164
+++ LG ++ + NH VT + S SD + + T N + V+ +P L
Sbjct: 219 IMDLLGDQVKL--NHPVTHVDQS------SDN---IIIETLNHEHYECKYVINAIP-PTL 266
Query: 1165 KAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCF 1224
A+ I F P LP + IQRL G + K ++ + E FW DY G E +
Sbjct: 267 TAK-IHFRPELPAERNQLIQRLPMGAVIKCMMYYKEAFWKKK-DYCGCMIIEDEDAPISI 324
Query: 1225 MFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGXXXXXXXXXXXXT 1284
+ + P ++ ++ + A + + ++ G
Sbjct: 325 TLDDTKPDGSLPAIMGFILARKADRLAKLHKEIRKKKICELYAKVLGSQEALHPVHYEEK 384
Query: 1285 DWGRDPFSYGAYS-YVATGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLR 1343
+W + +S G Y+ Y G + ++ +PV +FFAG T + + GA+ +G R
Sbjct: 385 NWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGR-IFFAGTETATKWSGYMEGAVEAGER 443
Query: 1344 EAVRIID 1350
A +++
Sbjct: 444 AAREVLN 450
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 32/41 (78%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904
++V+G GPAGL +A LQ+ G+ VTVLEAR R GGRV+T R
Sbjct: 14 VVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTAR 54
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 24/141 (17%)
Query: 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIIT 919
+++ + ++GAG +GL AA L++ G SV V+EAR+R+GGR +TD +V +++G ++
Sbjct: 4 LQRDVAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDGAV-LEIGGQWVS 62
Query: 920 GVEADVATERRADPSSLVCA--QLGLEL--------TVLNSDCPLYDIVSGQKVPANVDE 969
D ++L+ +LGL+ +V S +G P N E
Sbjct: 63 -----------PDQTALISLLDELGLKTFERYREGESVYISSAGERTRYTGDSFPTN--E 109
Query: 970 ALEAEFNSLLDDMVLLVAQKG 990
+ E + L+D+M L AQ G
Sbjct: 110 TTKKEMDRLIDEMDDLAAQIG 130
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 15/100 (15%)
Query: 1105 VVEALGKELLIHHNHVVTDISYSFKDSD-LSDGQSRVKVSTSNGSEFSGDAVLITVPLGC 1163
+ EALG ++ + N V + ++ + L+DG RV+ S V++ VP
Sbjct: 221 MAEALGDDVFL--NAPVRTVKWNESGATVLADGDIRVEASR----------VILAVPPNL 268
Query: 1164 LKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFW 1203
I + PPLP+ ++ Q G++ KV + FW
Sbjct: 269 YS--RISYDPPLPRRQHQMHQHQSLGLVIKVHAVYETPFW 306
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 53.5 bits (127), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEA 923
++VIG G +GL AA+ L +V VLEAR+R+GGR YT R VD+G + + +
Sbjct: 24 VVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVDVGGAYVGPTQN 83
Query: 924 DVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ + +LG+E +N + L V G+ P
Sbjct: 84 RILR---------LSKELGIETYKVNVNERLVQYVKGKTYP 115
Score = 47.0 bits (110), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 83/214 (38%), Gaps = 5/214 (2%)
Query: 1140 VKVSTSNGSEFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFA 1199
+ V T N + V+ +P + I F P LP + IQRL G + K ++ +
Sbjct: 262 IIVETLNHEHYECKYVISAIP--PILTAKIHFKPELPPERNQLIQRLPMGAVIKCMVYYK 319
Query: 1200 EVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSDHV 1259
E FW DY G E + + + P ++ ++ + A +
Sbjct: 320 EAFWKKK-DYCGCMIIEDEEAPIAITLDDTKPDGSLPAIMGFILARKADRLAKLHKDIRK 378
Query: 1260 NHAVMVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAYS-YVATGASGEDYDILGRPVENC 1318
+ ++ G +W + +S G Y+ Y G + ++ +PV
Sbjct: 379 RKICELYAKVLGSQEALYPVHYEEKNWCEEQYSGGCYTAYFPPGIMTQYGRVIRQPVGR- 437
Query: 1319 LFFAGEATCKEHPDTVGGAMLSGLREAVRIIDIL 1352
++FAG T + + GA+ +G R A +++ L
Sbjct: 438 IYFAGTETATQWSGYMEGAVEAGERAAREVLNAL 471
>pdb|2VVM|A Chain A, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVM|B Chain B, The Structure Of Mao-N-D5, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 857 DIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGAS 916
D D +IVIG G GLTA R L GF +LEAR+RIGGR ++ P ++G +
Sbjct: 35 DKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID-GYPYEMGGT 93
Query: 917 IITGVEADVATE 928
+ ++ V E
Sbjct: 94 WVHWHQSHVWRE 105
>pdb|2VVL|G Chain G, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 857 DIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGAS 916
D D +IVIG G GLTA R L GF +LEAR+RIGGR ++ P ++G +
Sbjct: 35 DKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID-GYPYEMGGT 93
Query: 917 IITGVEADVATE 928
+ ++ V E
Sbjct: 94 WVHWHQSHVWRE 105
>pdb|2VVL|A Chain A, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|B Chain B, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|C Chain C, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|D Chain D, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|E Chain E, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|F Chain F, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger.
pdb|2VVL|H Chain H, The Structure Of Mao-N-D3, A Variant Of Monoamine Oxidase
From Aspergillus Niger
Length = 495
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 857 DIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGAS 916
D D +IVIG G GLTA R L GF +LEAR+RIGGR ++ P ++G +
Sbjct: 35 DKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID-GYPYEMGGT 93
Query: 917 IITGVEADVATE 928
+ ++ V E
Sbjct: 94 WVHWHQSHVWRE 105
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 861 KKRIIVIGAGPAGLTAARHLQRQGFS-VTVLEARNRIGGRVYTDRTSLSVPVDLGAS 916
KK++I+IGAG AGL AA L + G VLEAR+R+GGR+ T D+GAS
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS 64
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 1115 IHHNHVVTDISYSFKDSDLS----------DGQSRVKVSTSNGSEFSGDAVLITVPLGCL 1164
++++ VV I+ SF + L + V V+ +G+ ++ D V+ITVP L
Sbjct: 199 LNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVL 258
Query: 1165 KAE---------SIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDD 1205
I F PPL A ++ FG L KV+ EF E W +
Sbjct: 259 NLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSN 308
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 1284 TDWGRDPFSYGAYSYVATGASGEDYDI-LGRPVENCLFFAGEATCKEHPDTVGGAMLSGL 1342
++W RDP+S GAYS G D + + ++ + FAGE T + GA SG
Sbjct: 438 SNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGR 497
Query: 1343 REAVRIIDIL 1352
REA RI D+L
Sbjct: 498 REATRISDLL 507
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 861 KKRIIVIGAGPAGLTAARHLQRQGFS-VTVLEARNRIGGRVYTDRTSLSVPVDLGAS 916
KK++I+IGAG AGL AA L + G VLEAR+R+GGR+ T D+GAS
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS 64
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 1115 IHHNHVVTDISYSFKDSDLS----------DGQSRVKVSTSNGSEFSGDAVLITVPLGCL 1164
++++ VV I+ SF + L + V V+ +G+ ++ D V+ITVP L
Sbjct: 199 LNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVL 258
Query: 1165 KAE---------SIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDD 1205
I F PPL A ++ FG L KV+ EF E W +
Sbjct: 259 NLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSN 308
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 1284 TDWGRDPFSYGAYSYVATGASGEDYDI-LGRPVENCLFFAGEATCKEHPDTVGGAMLSGL 1342
++W RDP+S GAYS G D + + ++ + FAGE T + GA SG
Sbjct: 438 SNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGR 497
Query: 1343 REAVRIIDIL 1352
REA RI D+L
Sbjct: 498 REATRISDLL 507
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 861 KKRIIVIGAGPAGLTAARHLQRQGFS-VTVLEARNRIGGRVYTDRTSLSVPVDLGAS 916
KK++I+IGAG AGL AA L + G VLEAR+R+GGR+ T D+GAS
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS 64
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 1115 IHHNHVVTDISYSFKDSDLS----------DGQSRVKVSTSNGSEFSGDAVLITVPLGCL 1164
++++ VV I+ SF + L + V V+ +G+ ++ D V+ITVP L
Sbjct: 199 LNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVL 258
Query: 1165 KAE---------SIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDD 1205
I F PPL A ++ FG L KV+ EF E W +
Sbjct: 259 NLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSN 308
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 1284 TDWGRDPFSYGAYSYVATGASGEDYDI-LGRPVENCLFFAGEATCKEHPDTVGGAMLSGL 1342
++W RDP+S GAYS G D + + ++ + FAGE T + GA SG
Sbjct: 438 SNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGR 497
Query: 1343 REAVRIIDIL 1352
REA RI D+L
Sbjct: 498 REATRISDLL 507
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From Yeast
Length = 513
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 861 KKRIIVIGAGPAGLTAARHLQRQGFS-VTVLEARNRIGGRVYTDRTSLSVPVDLGAS 916
KK++I+IGAG AGL AA L + G VLEAR+R+GGR+ T D+GAS
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS 64
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 1115 IHHNHVVTDISYSFKDSDLS----------DGQSRVKVSTSNGSEFSGDAVLITVPLGCL 1164
++++ VV I+ SF + L + V V+ +G+ ++ D V+ITVP L
Sbjct: 199 LNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVL 258
Query: 1165 KAE---------SIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDD 1205
I F PPL A ++ FG L KV+ EF E W +
Sbjct: 259 NLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSN 308
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 1284 TDWGRDPFSYGAYSYVATGASGEDYDI-LGRPVENCLFFAGEATCKEHPDTVGGAMLSGL 1342
++W RDP+S GAYS G D + + ++ + FAGE T + GA SG
Sbjct: 438 SNWTRDPYSRGAYSACFPGDDPVDMVVAMSNGQDSRIRFAGEHTIMDGAGCAYGAWESGR 497
Query: 1343 REAVRIIDIL 1352
REA RI D+L
Sbjct: 498 REATRISDLL 507
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From Yeast
Length = 516
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 861 KKRIIVIGAGPAGLTAARHLQRQGFS-VTVLEARNRIGGRVYTDRTSLSVPVDLGAS 916
KK++I+IGAG AGL AA L + G VLEAR+R+GGR+ T D+GAS
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGAS 64
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 1115 IHHNHVVTDISYSFKDSDLS----------DGQSRVKVSTSNGSEFSGDAVLITVPLGCL 1164
++++ VV I+ SF + L + V V+ +G+ ++ D V+ITVP L
Sbjct: 199 LNYDSVVQRIAQSFPQNWLKLSCEVKSITREPSKNVTVNCEDGTVYNADYVIITVPQSVL 258
Query: 1165 KAE---------SIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDD 1205
I F PPL A ++ FG L KV+ EF E W +
Sbjct: 259 NLSVQPEKNLRGRIEFQPPLKPVIQDAFDKIHFGALGKVIFEFEECCWSN 308
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 1284 TDWGRDPFSYGAYSYVATGASGEDYDILGRPVENC-LFFAGEATCKEHPDTVGGAMLSGL 1342
++W RDP+S GAYS G D + ++ + FAGE T + GA SG
Sbjct: 438 SNWTRDPYSRGAYSACFPGDDPVDXVVAXSNGQDSRIRFAGEHTIXDGAGCAYGAWESGR 497
Query: 1343 REAVRIIDIL 1352
REA RI D+L
Sbjct: 498 REATRISDLL 507
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 50.4 bits (119), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 9/216 (4%)
Query: 1140 VKVSTSNGSEFSGDAVLITVP--LGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLE 1197
V V T N + V+ +P LG I F+PPLP + I R+ G + K ++
Sbjct: 245 VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVY 300
Query: 1198 FAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSD 1257
+ E FW DY G + + + + + ++ ++ A ++ +
Sbjct: 301 YKEPFWRKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEE 359
Query: 1258 HVNHAVMVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAY-SYVATGASGEDYDILGRPVE 1316
+ + ++ G +W + +S G Y +Y G + +L +PV+
Sbjct: 360 RLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD 419
Query: 1317 NCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDIL 1352
++FAG T + GA+ +G R A I+ +
Sbjct: 420 R-IYFAGTETATHWSGLMEGAVEAGERAAREILHAM 454
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 872 AGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRA 931
+G+ AA+ L G +V VLEAR+R+GGR YT R VDLG S + + +
Sbjct: 15 SGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILR---- 70
Query: 932 DPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ +LGLE +N L V G+ P
Sbjct: 71 -----LAKELGLETYKVNEVERLIHHVKGKSYP 98
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With N-propargyl-1(s)-
Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With N-propargyl-1(s)-
Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With 2-(2-Benzofuranyl)
-2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With 2-(2-Benzofuranyl)
-2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 9/216 (4%)
Query: 1140 VKVSTSNGSEFSGDAVLITVP--LGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLE 1197
V V T N + V+ +P LG I F+PPLP + I R+ G + K ++
Sbjct: 245 VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVY 300
Query: 1198 FAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSD 1257
+ E FW DY G + + + + + ++ ++ A ++ +
Sbjct: 301 YKEPFWRKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEE 359
Query: 1258 HVNHAVMVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAY-SYVATGASGEDYDILGRPVE 1316
+ + ++ G +W + +S G Y +Y G + +L +PV+
Sbjct: 360 RLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD 419
Query: 1317 NCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDIL 1352
++FAG T + GA+ +G R A I+ +
Sbjct: 420 R-IYFAGTETATHWSGYMEGAVEAGERAAREILHAM 454
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 872 AGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRA 931
+G+ AA+ L G +V VLEAR+R+GGR YT R VDLG S + + +
Sbjct: 15 SGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILR---- 70
Query: 932 DPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ +LGLE +N L V G+ P
Sbjct: 71 -----LAKELGLETYKVNEVERLIHHVKGKSYP 98
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 9/216 (4%)
Query: 1140 VKVSTSNGSEFSGDAVLITVP--LGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLE 1197
V V T N + V+ +P LG I F+PPLP + I R+ G + K ++
Sbjct: 244 VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVY 299
Query: 1198 FAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSD 1257
+ E FW DY G + + + + + ++ ++ A ++ +
Sbjct: 300 YKEPFWRKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEE 358
Query: 1258 HVNHAVMVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAY-SYVATGASGEDYDILGRPVE 1316
+ + ++ G +W + +S G Y +Y G + +L +PV+
Sbjct: 359 RLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD 418
Query: 1317 NCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDIL 1352
++FAG T + GA+ +G R A I+ +
Sbjct: 419 R-IYFAGTETATHWSGYMEGAVEAGERAAREILHAM 453
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 872 AGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRA 931
+G+ AA+ L G +V VLEAR+R+GGR YT R VDLG S + + +
Sbjct: 14 SGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILR---- 69
Query: 932 DPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ +LGLE +N L V G+ P
Sbjct: 70 -----LAKELGLETYKVNEVERLIHHVKGKSYP 97
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 9/216 (4%)
Query: 1140 VKVSTSNGSEFSGDAVLITVP--LGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLE 1197
V V T N + V+ +P LG I F+PPLP + I R+ G + K ++
Sbjct: 245 VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVY 300
Query: 1198 FAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSD 1257
+ E FW DY G + + + + + ++ ++ A ++ +
Sbjct: 301 YKEPFWRKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEE 359
Query: 1258 HVNHAVMVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAY-SYVATGASGEDYDILGRPVE 1316
+ + ++ G +W + +S G Y +Y G + +L +PV+
Sbjct: 360 RLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD 419
Query: 1317 NCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDIL 1352
++FAG T + GA+ +G R A I+ +
Sbjct: 420 R-IYFAGTETATHWSGYMEGAVEAGERAAREILHAM 454
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 872 AGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRA 931
+G+ AA+ L G +V VLEAR+R+GGR YT R VDLG S + + +
Sbjct: 15 SGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILR---- 70
Query: 932 DPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ +LGLE +N L V G+ P
Sbjct: 71 -----LAKELGLETYKVNEVERLIHHVKGKSYP 98
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 9/216 (4%)
Query: 1140 VKVSTSNGSEFSGDAVLITVP--LGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLE 1197
V V T N + V+ +P LG I F+PPLP + I R+ G + K ++
Sbjct: 245 VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVY 300
Query: 1198 FAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSD 1257
+ E FW DY G + + + + + ++ ++ A ++ +
Sbjct: 301 YKEPFWRKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEE 359
Query: 1258 HVNHAVMVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAY-SYVATGASGEDYDILGRPVE 1316
+ + ++ G +W + +S G Y +Y G + +L +PV+
Sbjct: 360 RLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD 419
Query: 1317 NCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDIL 1352
++FAG T + GA+ +G R A I+ +
Sbjct: 420 R-IYFAGTETATHWSGHMEGAVEAGERAAREILHAM 454
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 872 AGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRA 931
+G+ AA+ L G +V VLEAR+R+GGR YT R VDLG S + + +
Sbjct: 15 SGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILR---- 70
Query: 932 DPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ +LGLE +N L V G+ P
Sbjct: 71 -----LAKELGLETYKVNEVERLIHHVKGKSYP 98
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 9/216 (4%)
Query: 1140 VKVSTSNGSEFSGDAVLITVP--LGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLE 1197
V V T N + V+ +P LG I F+PPLP + I R+ G + K ++
Sbjct: 245 VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVY 300
Query: 1198 FAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSD 1257
+ E FW DY G + + + + + ++ ++ A ++ +
Sbjct: 301 YKEPFWRKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEE 359
Query: 1258 HVNHAVMVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAY-SYVATGASGEDYDILGRPVE 1316
+ + ++ G +W + +S G Y +Y G + +L +PV+
Sbjct: 360 RLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD 419
Query: 1317 NCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDIL 1352
++FAG T + GA+ +G R A I+ +
Sbjct: 420 R-IYFAGTETATHWSGYMEGAVEAGERAAREILHAM 454
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 872 AGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRA 931
+G+ AA+ L G +V VLEAR+R+GGR YT R VDLG S + + +
Sbjct: 15 SGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILR---- 70
Query: 932 DPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ +LGLE +N L V G+ P
Sbjct: 71 -----LAKELGLETYKVNEVERLIHHVKGKSYP 98
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 9/216 (4%)
Query: 1140 VKVSTSNGSEFSGDAVLITVP--LGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLE 1197
V V T N + V+ +P LG I F+PPLP + I R+ G + K ++
Sbjct: 245 VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVY 300
Query: 1198 FAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSD 1257
+ E FW DY G + + + + + ++ ++ A ++ +
Sbjct: 301 YKEPFWRKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEE 359
Query: 1258 HVNHAVMVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAY-SYVATGASGEDYDILGRPVE 1316
+ + ++ G +W + +S G Y +Y G + +L +PV+
Sbjct: 360 RLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD 419
Query: 1317 NCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDIL 1352
++FAG T + GA+ +G R A I+ +
Sbjct: 420 R-IYFAGTETATHWSGFMEGAVEAGERAAREILHAM 454
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 872 AGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRA 931
+G+ AA+ L G +V VLEAR+R+GGR YT R VDLG S + + +
Sbjct: 15 SGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILR---- 70
Query: 932 DPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ +LGLE +N L V G+ P
Sbjct: 71 -----LAKELGLETYKVNEVERLIHHVKGKSYP 98
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 86/216 (39%), Gaps = 9/216 (4%)
Query: 1140 VKVSTSNGSEFSGDAVLITVP--LGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLE 1197
V V T N + V+ +P LG I F+PPLP + I R+ G + K ++
Sbjct: 245 VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVY 300
Query: 1198 FAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSD 1257
+ E FW DY G + + + + + ++ ++ A ++ +
Sbjct: 301 YKEPFWRKK-DYCGTMIIDGEEAPVAYTLDDTKPEGNYAAIMGFILAHKARKLARLTKEE 359
Query: 1258 HVNHAVMVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAY-SYVATGASGEDYDILGRPVE 1316
+ + ++ G +W + +S G Y +Y G + +L +PV+
Sbjct: 360 RLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD 419
Query: 1317 NCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDIL 1352
++FAG T + GA+ +G R A I+ +
Sbjct: 420 R-IYFAGTETATHWSGWMEGAVEAGERAAREILHAM 454
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 872 AGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRA 931
+G+ AA+ L G +V VLEAR+R+GGR YT R VDLG S + + +
Sbjct: 15 SGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILR---- 70
Query: 932 DPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ +LGLE +N L V G+ P
Sbjct: 71 -----LAKELGLETYKVNEVERLIHHVKGKSYP 98
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 30/45 (66%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTS 906
K ++V+GAG +GL+AA L G VTVLEA R GGRV T R S
Sbjct: 34 KHVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRTHRNS 78
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 76/183 (41%), Gaps = 7/183 (3%)
Query: 1166 AESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFM 1225
A I F PPLP K A++ + + K+ L + FW+D + G + TDL R
Sbjct: 299 ARRIQFEPPLPPKKQHALRSVHYRSGTKIFLTCSSKFWEDDGIHGGKST--TDLPSRFIY 356
Query: 1226 FWNVRKTVGAPVLIALVVGKAAVDGQNVSP---SDHVNHAVMVLRQIFGXXXXXXXXXXX 1282
+ N + G V+IA +G A Q + +D V + + ++ Q+
Sbjct: 357 YPNHNFSTGVGVIIAYGIGDDANFFQALKFKDCADIVFNDLSLIHQLPKEEIQSFCYPSM 416
Query: 1283 XTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGL 1342
W D ++ GA + + L P + +FFAGE T + H + + SGL
Sbjct: 417 IQKWSLDKYAMGAITTFTPYQFQRFSEALTAP-QGRIFFAGEYTAEAH-GWIDSTIKSGL 474
Query: 1343 REA 1345
A
Sbjct: 475 TAA 477
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 48.5 bits (114), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 872 AGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRA 931
+G+ AA+ L G +V VLEAR+R+GGR YT R VDLG S + + +
Sbjct: 14 SGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILR---- 69
Query: 932 DPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVP 964
+ +LGLE +N L V G+ P
Sbjct: 70 -----LAKELGLETYKVNEVERLIHHVKGKSYP 97
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 85/216 (39%), Gaps = 9/216 (4%)
Query: 1140 VKVSTSNGSEFSGDAVLITVP--LGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLE 1197
V V T N + V+ +P LG I F+PPLP + I R+ G + K ++
Sbjct: 244 VLVETLNHEMYEAKYVISAIPPTLGM----KIHFNPPLPMMRNQMITRVPLGSVIKCIVY 299
Query: 1198 FAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSD 1257
+ E FW DY G + + + + ++ ++ A ++ +
Sbjct: 300 YKEPFWRKK-DYCGTMIIDGEEAPVAATLDDTKPEGNYAAIMGFILAHKARKLARLTKEE 358
Query: 1258 HVNHAVMVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAY-SYVATGASGEDYDILGRPVE 1316
+ + ++ G +W + +S G Y +Y G + +L +PV+
Sbjct: 359 RLKKLCELYAKVLGSLEALEPVHYEEKNWCEEQYSGGCYTTYFPPGILTQYGRVLRQPVD 418
Query: 1317 NCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDIL 1352
++FAG T + GA+ +G R A I+ +
Sbjct: 419 R-IYFAGTETATHWSGYMEGAVEAGERAAREILHAM 453
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 376
Score = 47.4 bits (111), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR-NRIGGRVYT 902
KRI+++GAG AGL A L R G VT+LEA NR+GGR+ T
Sbjct: 45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKT 86
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904
KR++++GAG +GL+AA L G VTVLEA R GG+V T R
Sbjct: 47 KRVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQVKTYR 89
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 10/196 (5%)
Query: 1140 VKVSTSNGSEFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFA 1199
V TS S A + V A I F PPLP K A++ + + K+ L
Sbjct: 286 VTYQTSEKETLSVTADYVIVCTTSRAARRIKFEPPLPPKKAHALRSVHYRSGTKIFLTCT 345
Query: 1200 EVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGK-----AAVDGQNVS 1254
+ FW+D + G + TDL R + N G V+IA +G A+D ++
Sbjct: 346 KKFWEDDGIHGGKST--TDLPSRFIYYPNHNFPNGVGVIIAYGIGDDANYFEALDFEDC- 402
Query: 1255 PSDHVNHAVMVLRQIFGXXXXXXXXXXXXTDWGRDPFSYGAYSYVATGASGEDYDILGRP 1314
D V + + ++ Q+ W D ++ G + + L P
Sbjct: 403 -GDIVINDLSLIHQLPKEEIQAICRPSMIQRWSLDKYAMGGITTFTPYQFQHFSEALTAP 461
Query: 1315 VENCLFFAGEATCKEH 1330
V+ ++FAGE T + H
Sbjct: 462 VDR-IYFAGEYTAQAH 476
>pdb|3K7M|X Chain X, Crystal Structure Of 6-Hydroxy-L-Nicotine Oxidase From
Arthrobacter Nicotinovorans
pdb|3K7Q|X Chain X, Crystal Structure Of Substrate-Bound 6-Hydroxy-L-Nicotine
Oxidase From Arthrobacter Nicotinovorans
pdb|3NG7|X Chain X, Complex Of Dithionite-Reduced 6-Hydroxy-L-Nicotine Oxidase
With Substrate Bound At Active Site And Inhibitor At Exit
Cavity
pdb|3NGC|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Intermediate
Methylmyosmine Product Formed During Catalytic Turnover
pdb|3NH3|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Final Ketone
Product Formed During Catalytic Turnover
pdb|3NHO|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Product Bound
At Active Site
pdb|3NK0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Inhibitor Bound
At Active Site And Turnover Product At Exit Cavity
pdb|3NK1|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Serotonin
pdb|3NK2|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Dopamine
pdb|3NN6|X Chain X, Crystal Structure Of Inhibitor-Bound In Active Centre
6-Hydroxy-L- Nicotine Oxidase From Arthrobacter
Nicotinovorans
pdb|3NN0|X Chain X, Complex Of 6-Hydroxy-L-Nicotine Oxidase With Nicotinamide
Length = 431
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 131/334 (39%), Gaps = 74/334 (22%)
Query: 865 IVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVP---VDLGASII--- 918
IV+G G +GL AAR L G V +LE R+GGR Y+ R S +VP V++G + +
Sbjct: 5 IVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYS-RESRNVPGLRVEIGGAYLHRK 63
Query: 919 ----TGVEADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAE 974
E D A S + L T ++ P +P + A+EA
Sbjct: 64 HHPRLAAELDRYGIPTAAASEFTSFRHRLGPTAVDQAFP---------IPGSEAVAVEAA 114
Query: 975 FNSLLDDMVLLVAQKGEHAMKMSLEDGLEYXXXXXXXXXXXXXXEDASMHNSMDVYSKTS 1034
+LL D A ++ LE GLE +D
Sbjct: 115 TYTLLRD-----------AHRIDLEKGLE--------------NQDLE------------ 137
Query: 1035 SVDSRVPDKDCSREDILSPVERRVM---DWHFANLEYGCAALLKEVSLPFWNQDDVYGGF 1091
D +P + + L PV R+ + W+ A+ L + L + + G
Sbjct: 138 --DLDIPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVV 195
Query: 1092 GGAHCMIKGGYSTVVEALGKELL-IHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEF 1150
+ G + +V+A+ +E+ I VVT I S D+ V V+ +G F
Sbjct: 196 LSLDEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQS---GDV------VNVTVKDGHAF 246
Query: 1151 SGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQ 1184
+V++ P+ + I+F+P LP+ + S I+
Sbjct: 247 QAHSVIVATPMNTWR--RIVFTPALPERRRSVIE 278
>pdb|3K7T|A Chain A, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine Oxidase,
Crystal Form P3121
pdb|3K7T|B Chain B, Crystal Structure Of Apo-Form 6-Hydroxy-L-Nicotine Oxidase,
Crystal Form P3121
Length = 425
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 131/334 (39%), Gaps = 74/334 (22%)
Query: 865 IVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVP---VDLGASII--- 918
IV+G G +GL AAR L G V +LE R+GGR Y+ R S +VP V++G + +
Sbjct: 5 IVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYS-RESRNVPGLRVEIGGAYLHRK 63
Query: 919 ----TGVEADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAE 974
E D A S + L T ++ P +P + A+EA
Sbjct: 64 HHPRLAAELDRYGIPTAAASEFTSFRHRLGPTAVDQAFP---------IPGSEAVAVEAA 114
Query: 975 FNSLLDDMVLLVAQKGEHAMKMSLEDGLEYXXXXXXXXXXXXXXEDASMHNSMDVYSKTS 1034
+LL D A ++ LE GLE +D
Sbjct: 115 TYTLLRD-----------AHRIDLEKGLE--------------NQDLE------------ 137
Query: 1035 SVDSRVPDKDCSREDILSPVERRVM---DWHFANLEYGCAALLKEVSLPFWNQDDVYGGF 1091
D +P + + L PV R+ + W+ A+ L + L + + G
Sbjct: 138 --DLDIPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVV 195
Query: 1092 GGAHCMIKGGYSTVVEALGKELL-IHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEF 1150
+ G + +V+A+ +E+ I VVT I S D+ V V+ +G F
Sbjct: 196 LSLDEVFSNGSADLVDAMSQEIPEIRLQTVVTGIDQS---GDV------VNVTVKDGHAF 246
Query: 1151 SGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQ 1184
+V++ P+ + I+F+P LP+ + S I+
Sbjct: 247 QAHSVIVATPMNTWR--RIVFTPALPERRRSVIE 278
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 47.4 bits (111), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 29/43 (67%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904
K ++++GAG AGL+AA L G VTVLEA R GGRV T R
Sbjct: 34 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYR 76
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 13/183 (7%)
Query: 1169 IMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN 1228
I F+PPL K A++ + + K+ L FW+D + G + TDL R + N
Sbjct: 302 IKFNPPLLPKKAHALRSVHYRSGTKIFLTCTTKFWEDDGIHGGKST--TDLPSRFIYYPN 359
Query: 1229 VRKTVGAPVLIALVVGKAAVDGQNVSP---SDHVNHAVMVLRQIFGXXXXXXXXXXXXTD 1285
T G V+IA +G A Q + +D V + + ++ Q+
Sbjct: 360 HNFTNGVGVIIAYGIGDDANFFQALDFKDCADIVFNDLSLIHQLPKKDIQSFCYPSVIQK 419
Query: 1286 WGRDPFSYGAYSYVATGASGEDYDILGRPV---ENCLFFAGEATCKEHPDTVGGAMLSGL 1342
W D ++ G T + + P+ + ++FAGE T + H + + SGL
Sbjct: 420 WSLDKYAMGG----ITTFTPYQFQHFSDPLTASQGRIYFAGEYTAQAH-GWIDSTIKSGL 474
Query: 1343 REA 1345
R A
Sbjct: 475 RAA 477
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex With
L- Phenylalanine
Length = 486
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 29/43 (67%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904
K ++V+GAG +GL+AA L G VTVLEA R GGRV T R
Sbjct: 34 KHVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRTYR 76
Score = 44.7 bits (104), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 7/180 (3%)
Query: 1169 IMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN 1228
I F PPLP K A++ + + K+ L + FW+D + G + TDL R + N
Sbjct: 302 IKFEPPLPPKKAHALRSVHYRSGTKIFLTCTKKFWEDEGIHGGKST--TDLPSRFIYYPN 359
Query: 1229 VRKTVGAPVLIALVVGKAAVDGQNVSP---SDHVNHAVMVLRQIFGXXXXXXXXXXXXTD 1285
T G V+IA +G A Q + +D V + + ++ Q+
Sbjct: 360 HNFTSGVGVIIAYGIGDDANFFQALDFKDCADIVINDLSLIHQLPREEIQTFCYPSMIQK 419
Query: 1286 WGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREA 1345
W D ++ G + + L V+ ++FAGE T + H + + SGLR A
Sbjct: 420 WSLDKYAMGGITTFTPYQFQHFSESLTASVDR-IYFAGEHTAEAH-GWIDSTIKSGLRAA 477
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGV 921
KR+ VIGAG +GL AA L+ G +VTV EA + GG++ + + D GA+ T
Sbjct: 14 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQD-GLIWDEGANTXTES 72
Query: 922 EADV 925
E DV
Sbjct: 73 EGDV 76
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900
R++V+GAGP+GL AAR L +G+ V + EA +GGRV
Sbjct: 393 RVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRV 430
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae With
Reduced Fad
Length = 384
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTS 906
K+I+++GAG +G R L +G V +++ R+ IGG Y R S
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDS 48
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTS 906
K+I+++GAG +G R L +G V +++ R+ IGG Y R S
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDS 48
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 40.4 bits (93), Expect = 0.008, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTS 906
K+I+++GAG +G R L +G V +++ R+ IGG Y R S
Sbjct: 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDS 48
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
Ananatis
Length = 501
Score = 39.7 bits (91), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIIT 919
K VIGAG GL A LQ G V +LE R++ GGR Y D G ++IT
Sbjct: 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQ-GFTFDAGPTVIT 58
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901
K + +IG GP GLT A+ LQ+ G V+V E N R++
Sbjct: 7 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF 46
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 39.3 bits (90), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 863 RIIVIGAGPAGLTAARHLQRQGFS-VTVLEARNRIGGRVYTDRTSLSVPV---------- 911
+I ++GAGPA ++ A L R G+S +T+ E + +GG ++ +P
Sbjct: 189 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELM 248
Query: 912 -DLGASIITG 920
DLG II G
Sbjct: 249 KDLGVKIICG 258
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901
K + +IG GP GLT A+ LQ+ G V+V E N R++
Sbjct: 27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF 66
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901
K + +IG GP GLT A+ LQ+ G V+V E N R++
Sbjct: 27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF 66
>pdb|3UKK|A Chain A, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|B Chain B, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|C Chain C, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|D Chain D, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 517
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 859 DVKKRIIVIGAGPAGLTAARHL-QRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASI 917
D+ ++VIGAGP GL AA+ L Q G S ++++ GG TD T D+G +
Sbjct: 4 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHV 63
Query: 918 I 918
I
Sbjct: 64 I 64
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 863 RIIVIGAGPAGLTAARHLQRQGFS-VTVLEARNRIGGRVYTDRTSLSVPV---------- 911
+I ++GAGPA ++ A L R G+S +T+ E + +GG ++ +P
Sbjct: 189 KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELM 248
Query: 912 -DLGASIITG 920
DLG II G
Sbjct: 249 KDLGVKIICG 258
>pdb|3UKP|A Chain A, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|B Chain B, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|C Chain C, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|D Chain D, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|E Chain E, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|F Chain F, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|G Chain G, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|H Chain H, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 509
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 859 DVKKRIIVIGAGPAGLTAARHL-QRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASI 917
D+ ++VIGAGP GL AA+ L Q G S ++++ GG TD T D+G +
Sbjct: 4 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHV 63
Query: 918 I 918
I
Sbjct: 64 I 64
>pdb|3UKQ|A Chain A, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|B Chain B, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|C Chain C, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|D Chain D, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 510
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 859 DVKKRIIVIGAGPAGLTAARHL-QRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASI 917
D+ ++VIGAGP GL AA+ L Q G S ++++ GG TD T D+G +
Sbjct: 4 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHV 63
Query: 918 I 918
I
Sbjct: 64 I 64
>pdb|3UKH|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
Length = 519
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 859 DVKKRIIVIGAGPAGLTAARHL-QRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASI 917
D+ ++VIGAGP GL AA+ L Q G S ++++ GG TD T D+G +
Sbjct: 4 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHV 63
Query: 918 I 918
I
Sbjct: 64 I 64
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 39.3 bits (90), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901
K + +IG GP GLT A+ LQ+ G V+V E N R++
Sbjct: 27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIF 66
>pdb|3UKA|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKF|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
Length = 509
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 859 DVKKRIIVIGAGPAGLTAARHL-QRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASI 917
D+ ++VIGAGP GL AA+ L Q G S ++++ GG TD T D+G +
Sbjct: 4 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWXIVDSNETPGGLASTDVTPEGFLYDVGGHV 63
Query: 918 I 918
I
Sbjct: 64 I 64
>pdb|3UKL|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
Length = 510
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 859 DVKKRIIVIGAGPAGLTAARHL-QRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASI 917
D+ ++VIGAGP GL AA+ L Q G S ++++ GG TD T D+G +
Sbjct: 4 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHV 63
Query: 918 I 918
I
Sbjct: 64 I 64
>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase
(Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06
A Resolution
Length = 475
Score = 39.3 bits (90), Expect = 0.020, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIGGRVYTDR 904
KR++++G G GL AA + +R ++T+LEA R+GG+V T R
Sbjct: 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYR 49
>pdb|3UTE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTH|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|4GDC|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDD|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDE|A Chain A, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|B Chain B, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|C Chain C, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|D Chain D, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
Length = 513
Score = 38.9 bits (89), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 859 DVKKRIIVIGAGPAGLTAARHL-QRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASI 917
D+ ++VIGAGP GL AA+ L Q G S ++++ GG TD T D+G +
Sbjct: 8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHV 67
Query: 918 I 918
I
Sbjct: 68 I 68
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904
++V+GAG AGL A + QG +V EA + +GG Y +R
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNR 64
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 38.5 bits (88), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904
++V+GAG AGL A + QG +V EA + +GG Y +R
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNR 64
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 38.1 bits (87), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904
++V+GAG AGL A + QG +V EA + +GG Y +R
Sbjct: 24 VVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNR 64
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 38.1 bits (87), Expect = 0.042, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901
K + +IG GP GLT A+ LQ+ G V+V E N R++
Sbjct: 7 KNVAIIGGGPVGLTXAKLLQQNGIDVSVYERDNDREARIF 46
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 38.1 bits (87), Expect = 0.042, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901
K + +IG GP GLT A+ LQ+ G V+V E N R++
Sbjct: 28 KNVAIIGGGPVGLTXAKLLQQNGIDVSVYERDNDREARIF 67
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 37.7 bits (86), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899
KK + V+GAGPAGL A + +G VT+ +A + IGG+
Sbjct: 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ 411
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af
pdb|3I6D|B Chain B, Crystal Structure Of Ppo From Bacillus Subtilis With Af
Length = 470
Score = 37.7 bits (86), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 16/98 (16%)
Query: 859 DVKKRIIVIGAGPAGLTAARHLQRQ------GFSVTVLEARNRIGGRVYTDRTSLSVPVD 912
D KK +++IG G GL AA +++++ +T++EA R+GG++ T +
Sbjct: 3 DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKD------ 56
Query: 913 LGASIITGVEADVATERRADPSSLVCAQLGLELTVLNS 950
G I G D ER+ LV LGLE ++N+
Sbjct: 57 -GYIIERG--PDSFLERKKSAPQLV-KDLGLEHLLVNN 90
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 37.0 bits (84), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900
K ++++GAGP+G AAR L G++V + + +IGG +
Sbjct: 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL 428
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 37.0 bits (84), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900
K ++++GAGP+G AAR L G++V + + +IGG +
Sbjct: 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL 428
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 36.6 bits (83), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 850 ENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898
EN Y + D + + VIG+GP G AA + GF +E +GG
Sbjct: 16 ENLYFQADQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGG 64
>pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1V59|A Chain A, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
pdb|1V59|B Chain B, Crystal Structure Of Yeast Lipoamide Dehydrogenase
Complexed With Nad+
Length = 478
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898
+++IG GPAG AA + GF+ +E R ++GG
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGG 42
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902
+ V+G G +GL A HL+ +G +LE+ R+GG V T
Sbjct: 19 VAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGT 57
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 35.8 bits (81), Expect = 0.18, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 865 IVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903
I++G+G G A L++ V V+E RN IGG YT+
Sbjct: 5 IIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTE 43
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%)
Query: 850 ENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTS 906
E+ LR + KK ++VIGAG GL A + +G V V+E R+ RV T S
Sbjct: 131 ESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEIS 187
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related Protein
Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLE-ARNRIGG 898
+IV+G GP+GL+AA L R G V VL+ R+++ G
Sbjct: 4 VIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKG 39
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 35.4 bits (80), Expect = 0.29, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 849 GENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR---- 904
G+ LR R++++G G G A ++ G SVT+LEA + + RV R
Sbjct: 131 GDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAW 190
Query: 905 -----TSLSVPVDLGASII 918
T L V V+LG ++
Sbjct: 191 LRGLLTELGVQVELGTGVV 209
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 35.0 bits (79), Expect = 0.34, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898
++VIG G +GL+A L+R G S +L+A GG
Sbjct: 6 VVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG 40
>pdb|3NIX|A Chain A, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|B Chain B, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|C Chain C, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|D Chain D, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|E Chain E, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|F Chain F, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|G Chain G, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43.
pdb|3NIX|H Chain H, Crystal Structure Of FlavoproteinDEHYDROGENASE FROM
CYTOPHAGA Hutchinsonii. Northeast Structural Genomics
Consortium Target Chr43
Length = 421
Score = 35.0 bits (79), Expect = 0.39, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893
K ++VIGAGPAG AA + + GF V ++E +
Sbjct: 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQ 37
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From Haemophilus
Influenzae Rd
Length = 401
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 865 IVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900
I+IGAG AGL A L + G SVTV + +IG ++
Sbjct: 8 IIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI 43
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 34.7 bits (78), Expect = 0.48, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 862 KRIIVIGAGPAGLTAARHL--QRQGFSVTVLEARNRIGGRV-YTDRTSLSVPVDLGASII 918
++I +IGAGP+GL A+ L ++ VT+ E R GG YT S +PV I+
Sbjct: 7 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 66
Query: 919 T 919
T
Sbjct: 67 T 67
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 34.7 bits (78), Expect = 0.50, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 862 KRIIVIGAGPAGLTAARHL--QRQGFSVTVLEARNRIGGRV-YTDRTSLSVPVDLGASII 918
++I +IGAGP+GL A+ L ++ VT+ E R GG YT S +PV I+
Sbjct: 9 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPIL 68
Query: 919 T 919
T
Sbjct: 69 T 69
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 34.3 bits (77), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904
++V+GAG +GL A L+ G SV V+E +GG Y +R
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNR 59
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 34.3 bits (77), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 34.3 bits (77), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 15 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 48
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 34.3 bits (77), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904
++V+GAG +GL A L+ G SV V+E +GG Y +R
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNR 59
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+D+K ++++G+GP G T AR L G+ V + +
Sbjct: 15 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 48
>pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From
Novosphingobium Aromaticivorans
Length = 415
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900
K +VIG G GL AA L + G +VT+LEA R+ RV
Sbjct: 153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARV 191
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904
++V+GAG +GL A L+ G SV V+E +GG Y +R
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNR 59
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904
++V+GAG +GL A L+ G SV V+E +GG Y +R
Sbjct: 19 VLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNR 59
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR--NRIGGRVYTDRTS 906
++K +++IG G AG +AA L R+G + +++++ NRIG + D S
Sbjct: 4 ELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVS 53
>pdb|1C0K|A Chain A, Crystal Structure Analysis Of D-Amino Acid Oxidase In
Complex With L-Lactate
pdb|1C0L|A Chain A, D-Amino Acid Oxidase: Structure Of Substrate Complexes At
Very High Resolution Reveal The Chemical Reacttion
Mechanism Of Flavin Dehydrogenation
pdb|1C0P|A Chain A, D-amino Acic Oxidase In Complex With D-alanine And A
Partially Occupied Biatomic Species
pdb|1C0I|A Chain A, Crystal Structure Of D-Amino Acid Oxidase In Complex With
Two Anthranylate Molecules
Length = 363
Score = 33.9 bits (76), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 24/30 (80%)
Query: 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVL 890
+KR++V+G+G GL++A L R+G+SV +L
Sbjct: 6 QKRVVVLGSGVIGLSSALILARKGYSVHIL 35
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 33.5 bits (75), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 837 SERVQSASCDDAGENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896
S+++ +GEN Y + + + IVIGAG GL+AA L++ G V EA I
Sbjct: 3 SDKIHHHHHHSSGENLYFQGHM----KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI 58
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900
+++IG GPAGLTAA + R S +LE + GG++
Sbjct: 11 VVIIGGGPAGLTAAIYTGRAQLSTLILE-KGMPGGQI 46
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 33.5 bits (75), Expect = 1.1, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 837 SERVQSASCDDAGENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896
S+++ +GEN Y + + IVIGAG GL+AA L++ G V EA I
Sbjct: 3 SDKIHHHHHHSSGENLYFQG----HXKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI 58
>pdb|2E1M|B Chain B, Crystal Structure Of L-Glutamate Oxidase From Streptomyces
Sp. X-119-6
Length = 130
Score = 33.1 bits (74), Expect = 1.2, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 1150 FSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDT 1206
++GD ++T+P L+ + +PP K A+ + KV+LEF+ +W+ T
Sbjct: 6 WTGDLAIVTIPFSSLRF--VKVTPPFSYKKRRAVIETHYDQATKVLLEFSRRWWEFT 60
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase
Length = 477
Score = 32.7 bits (73), Expect = 1.7, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGF--SVTVLEARNRIGGRVYTDRTSLSVPVDLGASIIT 919
+ ++V+G G +GL A+ HL R V ++E+ R+GG + + R +LG
Sbjct: 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPR--- 59
Query: 920 GVEADVATERRADPSSLVCAQLGLELTVL 948
G+ A R + L+ ++LGL+ VL
Sbjct: 60 GIRPAGALGAR---TLLLVSELGLDSEVL 85
>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp
Length = 622
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891
D+K ++++G+GP G T AR L G+ V +
Sbjct: 43 DIKYDVVIVGSGPIGCTYARELVGAGYKVAXFD 75
>pdb|2QA2|A Chain A, Crystal Structure Of Cabe, An Aromatic Hydroxylase From
Angucycline Biosynthesis, Determined To 2.7 A Resolution
Length = 499
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLE 891
+IV+GAGPAGL A L+ G V VLE
Sbjct: 15 VIVVGAGPAGLMLAGELRLGGVDVMVLE 42
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 32.7 bits (73), Expect = 1.9, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893
++V+GAG GL+ A L RQG V V+E R
Sbjct: 8 VLVVGAGLGGLSTAMFLARQGVRVLVVERR 37
>pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2EQ7|B Chain B, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
pdb|2YQU|A Chain A, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
pdb|2YQU|B Chain B, Crystal Structures And Evolutionary Relationship Of Two
Different Lipoamide Dehydrogenase(e3s) From Thermus
Thermophilus
Length = 455
Score = 32.3 bits (72), Expect = 2.5, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898
++VIGAGP G AA + G V V+E +GG
Sbjct: 4 LLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGG 38
Score = 31.2 bits (69), Expect = 5.0, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896
+V KR+IV+G G GL R G V VLE +RI
Sbjct: 165 EVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI 202
>pdb|2O0Y|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
Rha1_ro06953 (Iclr-Family) From Rhodococcus Sp.
pdb|2O0Y|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
Rha1_ro06953 (Iclr-Family) From Rhodococcus Sp.
pdb|2O0Y|C Chain C, Crystal Structure Of Putative Transcriptional Regulator
Rha1_ro06953 (Iclr-Family) From Rhodococcus Sp.
pdb|2O0Y|D Chain D, Crystal Structure Of Putative Transcriptional Regulator
Rha1_ro06953 (Iclr-Family) From Rhodococcus Sp
Length = 260
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 652 LWSGDVGRILPLTECGVSDTPLGDEPSRASLIREIYKFLDQSGYINVGIASTKEKADHNA 711
LW+G G+IL L + D D P +F DQ +EK +
Sbjct: 148 LWAGAAGKILLLAAPELIDDVAADSPHGP-------EFADQ----------LREKVEDGR 190
Query: 712 KHSYKLLKEERLEKSSGAS--IADSEDGV--AFILGQIKSSETTTEAKHGVECN 761
+ Y+L+ ER SSG S + DS V A LG T H +EC
Sbjct: 191 ERGYQLVHGERELGSSGLSFPLVDSHGTVVAALTLGGPTGRFTEDRTPHYIECT 244
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR--NRIGGRV 900
+K ++ +IGAGP+GL + L + G +LE R + + GR+
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERRTPDYVLGRI 43
>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
Length = 369
Score = 31.6 bits (70), Expect = 4.1, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 854 LRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897
+ DID IVIGAG GL AR L G V V EA IG
Sbjct: 1 MSTDIDC----IVIGAGVVGLAIARALAAGGHEVLVAEAAEGIG 40
>pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
pdb|3URH|B Chain B, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From
Sinorhizobium Meliloti 1021
Length = 491
Score = 31.2 bits (69), Expect = 4.8, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 842 SASCDDAGENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898
S+ D EN Y + +IVIG+GP G A + G V V+E R+ GG
Sbjct: 8 SSGVDLGTENLYFQSXXAYD--LIVIGSGPGGYVCAIKAAQLGXKVAVVEKRSTYGG 62
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 31.2 bits (69), Expect = 4.9, Method: Composition-based stats.
Identities = 51/196 (26%), Positives = 78/196 (39%), Gaps = 26/196 (13%)
Query: 718 LKEERLEKSSGASIADSEDGVAFILGQIKSSETTTEAKHGVECNDGNQQIGIKTGGSMTP 777
LK +EK G + G +G I S + E ++ + GI TG +
Sbjct: 27 LKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG-EVAI 85
Query: 778 ELPNEIRQKESVVDDCQQRVDSDPKAS---------NRLVG--VDVSCDDPSCGMVD--- 823
++P I +K+ +V + V S KA+ L G V+V+ D S ++D
Sbjct: 86 DVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTEN 145
Query: 824 ----GGTVPLTIEERSESERVQSASCDDAGENHYLRCDIDVKKRIIVIGAGPAGLTAARH 879
G+ P+ I Q D G + +V ++ VIGAG GL
Sbjct: 146 VILASGSKPVEIPPAPVD---QDVIVDSTGALDFQ----NVPGKLGVIGAGVIGLELGSV 198
Query: 880 LQRQGFSVTVLEARNR 895
R G VTVLEA ++
Sbjct: 199 WARLGAEVTVLEAMDK 214
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From Methanosarcina
Mazei. Northeast Structural Genomics Consortium Target
Id Mar208
Length = 425
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899
+ +VIGAG GL +A L + G V V E GGR
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGR 38
>pdb|2VHV|A Chain A, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh.
pdb|2VHV|B Chain B, Crystal Structure Of The D270a Mutant Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis In Complex
With Nadh
Length = 377
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLE 891
++VIGAG AG AAR G +VTVL+
Sbjct: 171 VVVIGAGTAGYNAARIANGMGATVTVLD 198
>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester
Reductase (Cgi- 63)
Length = 357
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1513 QLVSVWLEVFRKEKASSRLKLLKQSTAVDSIKRKSLKDPSSGKPPLHSHHGGLESKVSP 1571
+L WL ++K+ + + K L T D I+R L P+ + PL + LE+ + P
Sbjct: 290 KLRGFWLSQWKKDHSPDQFKELIL-TLCDLIRRGQLTAPACSQVPLQDYQSALEASMKP 347
>pdb|2VHW|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|C Chain C, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|D Chain D, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|E Chain E, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHW|F Chain F, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Open And Closed
Conformation
pdb|2VHX|A Chain A, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|B Chain B, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|C Chain C, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|D Chain D, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|E Chain E, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHX|F Chain F, Crystal Structure Of The Ternary Complex Of L-Alanine
Dehydrogenase From Mycobacterium Tuberculosis With Nad+
And Pyruvate
pdb|2VHY|A Chain A, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHY|B Chain B, Crystal Structure Of Apo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis
pdb|2VHZ|A Chain A, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
pdb|2VHZ|B Chain B, Crystal Structure Of Holo L-Alanine Dehydrogenase From
Mycobacterium Tuberculosis In The Closed Conformation
Length = 377
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLE 891
++VIGAG AG AAR G +VTVL+
Sbjct: 171 VVVIGAGTAGYNAARIANGMGATVTVLD 198
>pdb|2VOE|A Chain A, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|B Chain B, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|C Chain C, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|D Chain D, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|E Chain E, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOE|F Chain F, Crystal Structure Of Rv2780 From M. Tuberculosis H37rv
pdb|2VOJ|A Chain A, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|C Chain C, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
pdb|2VOJ|E Chain E, Ternary Complex Of M. Tuberculosis Rv2780 With Nad And
Pyruvate
Length = 371
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 864 IIVIGAGPAGLTAARHLQRQGFSVTVLE 891
++VIGAG AG AAR G +VTVL+
Sbjct: 171 VVVIGAGTAGYNAARIANGMGATVTVLD 198
>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
pdb|2A87|B Chain B, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase
Length = 335
Score = 30.8 bits (68), Expect = 6.5, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902
+ +IVIG+GPAG TAA + R + V E + GG + T
Sbjct: 15 RDVIVIGSGPAGYTAALYAARAQLAPLVFEGTS-FGGALMT 54
>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
pdb|2VCY|B Chain B, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human
Fas Ii
Length = 344
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 1513 QLVSVWLEVFRKEKASSRLKLLKQSTAVDSIKRKSLKDPSSGKPPLHSHHGGLESKVSP 1571
+L WL ++K+ + + K L T D I+R L P+ + PL + LE+ + P
Sbjct: 277 KLRGFWLSQWKKDHSPDQFKELIL-TLCDLIRRGQLTAPACSQVPLQDYQSALEASMKP 334
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 639 LQEYLECRNQILSLWSGDVGRILPLTECGVSDTPLGDEPSRASLIREIYKFLDQSGYINV 698
LQ + R +I +++SGD+ + L + G DT G+ + +I E +F + +++V
Sbjct: 356 LQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGE---KNDIILESMEFPEPVIHLSV 412
Query: 699 GIASTKEKADHNAKHSYKLLKEERLEKSSGASIADSEDGVAFI--LGQIKSSETTTEAK- 755
K KAD + K + L+K + E + + D E G I +G++ K
Sbjct: 413 ---EPKSKADQD-KMTQALVKLQE-EDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKK 467
Query: 756 -HGVECNDGNQQIGIK 770
VECN G + +
Sbjct: 468 EFNVECNVGAPMVSYR 483
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 30.4 bits (67), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 639 LQEYLECRNQILSLWSGDVGRILPLTECGVSDTPLGDEPSRASLIREIYKFLDQSGYINV 698
LQ + R +I +++SGD+ + L + G DT G+ + +I E +F + +++V
Sbjct: 356 LQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGE---KNDIILESMEFPEPVIHLSV 412
Query: 699 GIASTKEKADHNAKHSYKLLKEERLEKSSGASIADSEDGVAFI--LGQIKSSETTTEAK- 755
K KAD + K + L+K + E + + D E G I +G++ K
Sbjct: 413 ---EPKSKADQD-KMTQALVKLQE-EDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKK 467
Query: 756 -HGVECNDGNQQIGIK 770
VECN G + +
Sbjct: 468 EFNVECNVGAPMVSYR 483
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 639 LQEYLECRNQILSLWSGDVGRILPLTECGVSDTPLGDEPSRASLIREIYKFLDQSGYINV 698
LQ + R +I +++SGD+ + L + G DT G+ + +I E +F + +++V
Sbjct: 356 LQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGE---KNDIILESMEFPEPVIHLSV 412
Query: 699 GIASTKEKADHNAKHSYKLLKEERLEKSSGASIADSEDGVAFI--LGQIKSSETTTEAK- 755
K KAD + K + L+K + E + + D E G I +G++ K
Sbjct: 413 ---EPKSKADQD-KMTQALVKLQE-EDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKK 467
Query: 756 -HGVECNDGNQQIGIK 770
VECN G + +
Sbjct: 468 EFNVECNVGAPMVSYR 483
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 30.4 bits (67), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 639 LQEYLECRNQILSLWSGDVGRILPLTECGVSDTPLGDEPSRASLIREIYKFLDQSGYINV 698
LQ + R +I +++SGD+ + L + G DT G+ + +I E +F + +++V
Sbjct: 356 LQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGE---KNDIILESMEFPEPVIHLSV 412
Query: 699 GIASTKEKADHNAKHSYKLLKEERLEKSSGASIADSEDGVAFI--LGQIKSSETTTEAK- 755
K KAD + K + L+K + E + + D E G I +G++ K
Sbjct: 413 ---EPKSKADQD-KMTQALVKLQE-EDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKK 467
Query: 756 -HGVECNDGNQQIGIK 770
VECN G + +
Sbjct: 468 EFNVECNVGAPMVSYR 483
>pdb|2I0Z|A Chain A, Crystal Structure Of A Fad Binding Protein From Bacillus
Cereus, A Putative Nad(Fad)-Utilizing Dehydrogenases
Length = 447
Score = 30.4 bits (67), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 842 SASCDDAGENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897
S+ D EN Y + + + +IVIG GP+GL AA +G +V +L+ N++G
Sbjct: 8 SSGVDLGTENLYFQSN-AMHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLG 62
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 30.4 bits (67), Expect = 9.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 865 IVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901
+++GAG AG A L G V +++ R IGG Y
Sbjct: 33 LIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAY 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,654,301
Number of Sequences: 62578
Number of extensions: 1798945
Number of successful extensions: 3836
Number of sequences better than 100.0: 170
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 3547
Number of HSP's gapped (non-prelim): 252
length of query: 1624
length of database: 14,973,337
effective HSP length: 112
effective length of query: 1512
effective length of database: 7,964,601
effective search space: 12042476712
effective search space used: 12042476712
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)