Query 046008
Match_columns 1624
No_of_seqs 426 out of 2061
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046008.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046008hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02976 amine oxidase 100.0 2E-207 4E-212 1962.1 86.3 1348 40-1547 3-1382(1713)
2 PLN03000 amine oxidase 100.0 9.7E-69 2.1E-73 680.0 43.4 543 601-1355 76-626 (881)
3 PLN02328 lysine-specific histo 100.0 4.3E-67 9.3E-72 666.7 41.1 607 602-1429 128-748 (808)
4 PLN02529 lysine-specific histo 100.0 1.6E-63 3.5E-68 632.2 45.9 606 604-1429 55-669 (738)
5 KOG0029 Amine oxidase [Seconda 100.0 6.3E-53 1.4E-57 518.9 34.4 448 857-1354 11-461 (501)
6 PLN02268 probable polyamine ox 100.0 2.3E-48 5E-53 475.6 42.1 424 862-1352 1-434 (435)
7 PLN02568 polyamine oxidase 100.0 2.6E-47 5.6E-52 476.0 41.1 449 861-1353 5-536 (539)
8 PLN02676 polyamine oxidase 100.0 1.9E-46 4.1E-51 464.7 40.3 434 858-1354 23-475 (487)
9 KOG0685 Flavin-containing amin 100.0 6.1E-45 1.3E-49 428.4 31.0 438 859-1354 19-493 (498)
10 COG1231 Monoamine oxidase [Ami 100.0 7.3E-40 1.6E-44 386.9 30.0 431 859-1353 5-448 (450)
11 PF01593 Amino_oxidase: Flavin 100.0 5.1E-37 1.1E-41 366.4 26.7 240 1096-1349 205-450 (450)
12 TIGR00562 proto_IX_ox protopor 100.0 1.9E-34 4E-39 355.3 32.8 434 861-1353 2-461 (462)
13 PRK12416 protoporphyrinogen ox 100.0 2.6E-33 5.6E-38 345.9 34.2 428 862-1353 2-462 (463)
14 PLN02576 protoporphyrinogen ox 100.0 9.5E-33 2.1E-37 343.6 32.1 439 858-1353 9-488 (496)
15 PRK07233 hypothetical protein; 100.0 2.6E-32 5.7E-37 332.1 33.8 417 863-1353 1-432 (434)
16 PLN02612 phytoene desaturase 100.0 5.6E-32 1.2E-36 341.5 34.8 441 858-1354 90-550 (567)
17 PRK11883 protoporphyrinogen ox 100.0 3.2E-32 6.8E-37 333.6 31.1 403 862-1350 1-450 (451)
18 TIGR02731 phytoene_desat phyto 100.0 9.7E-32 2.1E-36 331.1 31.0 421 863-1349 1-453 (453)
19 PRK07208 hypothetical protein; 100.0 8.6E-29 1.9E-33 306.9 32.6 414 860-1351 3-460 (479)
20 TIGR03467 HpnE squalene-associ 100.0 2.6E-28 5.6E-33 295.2 33.6 397 875-1349 1-418 (419)
21 PLN02487 zeta-carotene desatur 100.0 2.1E-28 4.4E-33 307.0 33.7 464 835-1353 46-554 (569)
22 TIGR02733 desat_CrtD C-3',4' d 100.0 1.7E-27 3.6E-32 296.7 33.4 446 862-1350 2-490 (492)
23 COG1232 HemY Protoporphyrinoge 100.0 1.2E-27 2.7E-32 289.6 27.7 420 862-1349 1-443 (444)
24 TIGR02732 zeta_caro_desat caro 100.0 6.7E-27 1.5E-31 290.0 31.4 430 863-1349 1-474 (474)
25 TIGR02734 crtI_fam phytoene de 99.9 6.3E-26 1.4E-30 283.2 31.6 442 864-1356 1-496 (502)
26 TIGR02730 carot_isom carotene 99.9 8.1E-25 1.8E-29 272.9 34.3 452 862-1352 1-492 (493)
27 KOG1276 Protoporphyrinogen oxi 99.9 1.6E-22 3.4E-27 236.0 26.5 441 858-1349 8-490 (491)
28 COG3380 Predicted NAD/FAD-depe 99.9 4.2E-23 9.2E-28 229.0 18.1 226 1096-1352 101-331 (331)
29 COG1233 Phytoene dehydrogenase 99.9 6E-21 1.3E-25 237.8 23.8 259 860-1162 2-280 (487)
30 COG3349 Uncharacterized conser 99.8 6.9E-20 1.5E-24 221.7 15.0 434 862-1354 1-465 (485)
31 KOG4254 Phytoene desaturase [C 99.8 1.1E-17 2.5E-22 196.0 24.9 454 859-1353 12-547 (561)
32 COG2907 Predicted NAD/FAD-bind 99.8 9E-18 1.9E-22 191.8 20.3 281 858-1199 5-305 (447)
33 TIGR00031 UDP-GALP_mutase UDP- 99.5 6.8E-12 1.5E-16 151.7 24.4 61 862-923 2-63 (377)
34 PTZ00363 rab-GDP dissociation 99.4 1.5E-11 3.3E-16 151.7 26.4 252 860-1160 3-287 (443)
35 COG2081 Predicted flavoprotein 99.3 6.8E-12 1.5E-16 148.4 13.9 59 1093-1160 101-164 (408)
36 PF13450 NAD_binding_8: NAD(P) 99.2 7.7E-12 1.7E-16 115.8 5.0 56 866-922 1-56 (68)
37 PF04433 SWIRM: SWIRM domain; 99.2 2.2E-12 4.7E-17 124.9 -0.9 84 609-698 3-86 (86)
38 PRK13977 myosin-cross-reactive 99.1 4.8E-10 1E-14 140.3 14.0 59 859-917 20-83 (576)
39 PF01266 DAO: FAD dependent ox 99.1 5.8E-09 1.3E-13 123.2 20.6 57 1097-1163 138-203 (358)
40 PRK10015 oxidoreductase; Provi 99.0 8.2E-08 1.8E-12 118.9 27.0 38 860-897 4-41 (429)
41 PRK10157 putative oxidoreducta 99.0 9.4E-08 2E-12 118.4 26.8 40 860-899 4-43 (428)
42 TIGR01988 Ubi-OHases Ubiquinon 98.9 1.2E-07 2.6E-12 114.5 24.8 35 863-897 1-35 (385)
43 PRK09126 hypothetical protein; 98.9 8.2E-08 1.8E-12 116.7 20.8 36 861-896 3-38 (392)
44 COG0562 Glf UDP-galactopyranos 98.9 1.4E-08 3.1E-13 116.9 12.4 66 861-926 1-68 (374)
45 COG0644 FixC Dehydrogenases (f 98.9 1.9E-07 4.1E-12 114.5 23.2 43 860-902 2-44 (396)
46 PRK08773 2-octaprenyl-3-methyl 98.9 1.1E-07 2.5E-12 115.8 21.1 38 859-896 4-41 (392)
47 COG0654 UbiH 2-polyprenyl-6-me 98.8 8.9E-07 1.9E-11 108.2 27.0 33 861-893 2-34 (387)
48 PF03486 HI0933_like: HI0933-l 98.8 1.6E-08 3.5E-13 124.0 11.8 39 862-900 1-39 (409)
49 PRK12831 putative oxidoreducta 98.8 6.3E-09 1.4E-13 129.9 8.2 109 786-902 72-181 (464)
50 PRK07364 2-octaprenyl-6-methox 98.8 4.8E-07 1E-11 110.9 24.0 38 859-896 16-53 (415)
51 TIGR02023 BchP-ChlP geranylger 98.8 8.5E-07 1.8E-11 108.3 25.7 32 862-893 1-32 (388)
52 TIGR01984 UbiH 2-polyprenyl-6- 98.8 4.2E-07 9.2E-12 110.1 22.8 34 863-896 1-35 (382)
53 PRK07494 2-octaprenyl-6-methox 98.8 4.5E-07 9.7E-12 110.3 22.9 36 861-896 7-42 (388)
54 PRK07333 2-octaprenyl-6-methox 98.8 6.5E-07 1.4E-11 109.3 23.7 35 861-895 1-37 (403)
55 PRK12779 putative bifunctional 98.8 7.4E-09 1.6E-13 138.4 6.9 114 784-905 230-350 (944)
56 PRK12409 D-amino acid dehydrog 98.7 8.8E-07 1.9E-11 108.7 24.0 39 862-900 2-40 (410)
57 PRK12769 putative oxidoreducta 98.7 1.4E-08 3.1E-13 131.8 8.5 113 784-903 256-369 (654)
58 TIGR01318 gltD_gamma_fam gluta 98.7 1.4E-08 3E-13 127.1 7.6 113 784-903 70-183 (467)
59 PRK05732 2-octaprenyl-6-methox 98.7 2.1E-06 4.5E-11 104.5 25.9 34 861-894 3-39 (395)
60 PRK08243 4-hydroxybenzoate 3-m 98.7 5.2E-06 1.1E-10 101.6 29.1 35 861-895 2-36 (392)
61 PRK07588 hypothetical protein; 98.7 6.1E-07 1.3E-11 109.4 20.8 47 1107-1162 111-157 (391)
62 PRK12775 putative trifunctiona 98.7 1.5E-08 3.2E-13 136.5 7.3 112 784-904 361-473 (1006)
63 TIGR03315 Se_ygfK putative sel 98.7 1.8E-08 4E-13 133.8 7.9 112 784-904 467-580 (1012)
64 PRK05714 2-octaprenyl-3-methyl 98.7 3.2E-06 6.9E-11 103.6 26.5 35 861-895 2-36 (405)
65 TIGR01316 gltA glutamate synth 98.7 2.2E-08 4.8E-13 124.6 7.8 117 784-902 58-174 (449)
66 PRK12809 putative oxidoreducta 98.7 2.9E-08 6.2E-13 128.7 8.6 115 784-905 239-354 (639)
67 PRK08850 2-octaprenyl-6-methox 98.7 1.9E-06 4.2E-11 105.7 23.7 50 1104-1162 116-167 (405)
68 TIGR02032 GG-red-SF geranylger 98.7 4E-06 8.6E-11 97.1 25.0 37 862-898 1-37 (295)
69 PRK08020 ubiF 2-octaprenyl-3-m 98.7 1.2E-06 2.6E-11 106.8 21.2 36 860-895 4-39 (391)
70 PRK11259 solA N-methyltryptoph 98.7 4E-06 8.6E-11 101.4 25.5 38 861-898 3-40 (376)
71 PRK06185 hypothetical protein; 98.7 7E-06 1.5E-10 100.6 28.0 37 859-895 4-40 (407)
72 PRK07236 hypothetical protein; 98.7 5.8E-06 1.3E-10 100.9 27.0 36 860-895 5-40 (386)
73 PRK07608 ubiquinone biosynthes 98.6 3.4E-06 7.3E-11 102.5 24.5 38 860-897 4-41 (388)
74 PRK08013 oxidoreductase; Provi 98.6 5.2E-06 1.1E-10 101.9 26.0 36 861-896 3-38 (400)
75 PRK07045 putative monooxygenas 98.6 3.9E-06 8.5E-11 102.3 24.4 37 860-896 4-40 (388)
76 PLN00093 geranylgeranyl diphos 98.6 1.1E-05 2.4E-10 100.8 28.5 37 858-894 36-72 (450)
77 TIGR02028 ChlP geranylgeranyl 98.6 6.7E-06 1.5E-10 101.1 26.2 36 862-897 1-36 (398)
78 PRK06184 hypothetical protein; 98.6 9.7E-06 2.1E-10 102.5 28.3 36 861-896 3-38 (502)
79 PRK00711 D-amino acid dehydrog 98.6 9.2E-06 2E-10 99.8 27.3 42 862-903 1-42 (416)
80 COG1148 HdrA Heterodisulfide r 98.6 2.2E-08 4.8E-13 119.8 4.1 91 809-904 77-167 (622)
81 PRK11728 hydroxyglutarate oxid 98.6 2.7E-07 5.8E-12 112.8 13.7 42 861-902 2-45 (393)
82 PRK09853 putative selenate red 98.6 4.2E-08 9.1E-13 129.9 7.0 112 784-904 469-582 (1019)
83 TIGR03329 Phn_aa_oxid putative 98.6 6.7E-06 1.4E-10 102.9 26.2 38 859-897 22-61 (460)
84 COG0579 Predicted dehydrogenas 98.6 4.9E-07 1.1E-11 110.7 15.3 45 860-904 2-48 (429)
85 PRK06753 hypothetical protein; 98.6 7.6E-06 1.6E-10 99.0 25.1 36 862-897 1-36 (373)
86 COG0665 DadA Glycine/D-amino a 98.6 1.1E-05 2.5E-10 97.6 25.9 39 859-897 2-40 (387)
87 PRK06834 hypothetical protein; 98.6 2.5E-05 5.5E-10 98.6 29.7 35 861-895 3-37 (488)
88 PRK06847 hypothetical protein; 98.6 1.2E-05 2.5E-10 97.4 25.6 37 860-896 3-39 (375)
89 PRK08849 2-octaprenyl-3-methyl 98.5 1.4E-05 3E-10 97.6 26.2 33 862-894 4-36 (384)
90 PRK12778 putative bifunctional 98.5 1.2E-07 2.6E-12 125.2 8.4 115 784-903 359-473 (752)
91 PRK05868 hypothetical protein; 98.5 1.2E-05 2.7E-10 97.9 25.1 36 861-896 1-36 (372)
92 PRK12810 gltD glutamate syntha 98.5 1E-07 2.3E-12 119.4 7.2 110 784-902 74-184 (471)
93 PRK07538 hypothetical protein; 98.5 1.3E-05 2.7E-10 98.9 25.2 35 862-896 1-35 (413)
94 COG1635 THI4 Ribulose 1,5-bisp 98.5 1.2E-07 2.7E-12 104.6 6.4 69 861-947 30-98 (262)
95 PRK01747 mnmC bifunctional tRN 98.5 1.3E-05 2.8E-10 104.8 26.0 40 861-900 260-299 (662)
96 PRK12814 putative NADPH-depend 98.5 1.9E-07 4.1E-12 121.4 8.1 111 784-903 124-235 (652)
97 COG0493 GltD NADPH-dependent g 98.5 1.8E-07 3.9E-12 116.0 7.5 115 786-906 54-168 (457)
98 PRK06567 putative bifunctional 98.5 1.7E-07 3.7E-12 122.9 6.9 107 784-899 300-421 (1028)
99 TIGR01377 soxA_mon sarcosine o 98.4 1.3E-06 2.8E-11 105.7 13.5 37 862-898 1-37 (380)
100 KOG0399 Glutamate synthase [Am 98.4 3E-07 6.5E-12 116.9 7.9 108 790-906 1722-1830(2142)
101 PRK06617 2-octaprenyl-6-methox 98.4 3.1E-05 6.7E-10 94.3 24.6 33 862-894 2-34 (374)
102 PRK08244 hypothetical protein; 98.4 3E-05 6.5E-10 97.9 24.8 35 861-895 2-36 (493)
103 PF13738 Pyr_redox_3: Pyridine 98.4 2.4E-06 5.1E-11 94.2 12.6 39 865-903 1-40 (203)
104 PRK08132 FAD-dependent oxidore 98.4 7.6E-05 1.7E-09 95.5 28.1 38 859-896 21-58 (547)
105 PRK06183 mhpA 3-(3-hydroxyphen 98.4 1.9E-05 4E-10 100.9 22.3 39 859-897 8-46 (538)
106 PF05834 Lycopene_cycl: Lycope 98.4 6.5E-05 1.4E-09 91.7 25.8 197 1104-1354 92-290 (374)
107 TIGR01373 soxB sarcosine oxida 98.3 3.6E-05 7.8E-10 94.5 23.0 39 859-898 28-68 (407)
108 PRK07190 hypothetical protein; 98.3 6.6E-05 1.4E-09 94.8 25.8 37 860-896 4-40 (487)
109 PF01946 Thi4: Thi4 family; PD 98.3 5.5E-07 1.2E-11 100.3 6.3 70 860-947 16-85 (230)
110 PRK06126 hypothetical protein; 98.3 6.6E-05 1.4E-09 96.0 25.7 36 860-895 6-41 (545)
111 COG0578 GlpA Glycerol-3-phosph 98.3 3.2E-05 6.9E-10 97.0 21.8 42 860-901 11-52 (532)
112 PRK12266 glpD glycerol-3-phosp 98.3 6.3E-05 1.4E-09 95.5 24.5 42 859-900 4-45 (508)
113 PRK11749 dihydropyrimidine deh 98.3 8.1E-07 1.8E-11 111.0 7.4 109 786-902 72-181 (457)
114 TIGR01317 GOGAT_sm_gam glutama 98.3 8.1E-07 1.7E-11 111.8 7.4 109 786-903 76-185 (485)
115 PLN02697 lycopene epsilon cycl 98.3 0.00077 1.7E-08 85.9 33.4 35 859-893 106-140 (529)
116 PRK13369 glycerol-3-phosphate 98.3 7.4E-05 1.6E-09 94.7 24.3 41 859-899 4-44 (502)
117 TIGR01789 lycopene_cycl lycope 98.3 0.00015 3.2E-09 88.6 25.5 37 863-899 1-39 (370)
118 PRK05945 sdhA succinate dehydr 98.2 0.00012 2.6E-09 94.4 25.0 39 861-899 3-43 (575)
119 PRK12771 putative glutamate sy 98.2 1.6E-06 3.4E-11 111.2 7.5 110 784-903 69-179 (564)
120 TIGR03219 salicylate_mono sali 98.2 6.7E-06 1.5E-10 101.3 12.8 51 1103-1162 105-158 (414)
121 PRK06996 hypothetical protein; 98.2 0.00017 3.6E-09 88.7 24.8 37 859-895 9-49 (398)
122 PTZ00383 malate:quinone oxidor 98.2 1.1E-05 2.4E-10 101.6 14.8 40 859-898 43-84 (497)
123 TIGR01989 COQ6 Ubiquinone bios 98.2 0.0002 4.3E-09 89.2 25.7 57 1104-1162 122-182 (437)
124 PLN02464 glycerol-3-phosphate 98.2 0.00026 5.6E-09 92.1 26.1 39 860-898 70-108 (627)
125 PRK06069 sdhA succinate dehydr 98.1 9.1E-05 2E-09 95.5 21.1 39 861-899 5-46 (577)
126 PRK07803 sdhA succinate dehydr 98.1 0.00099 2.1E-08 86.8 30.0 38 861-898 8-45 (626)
127 TIGR03364 HpnW_proposed FAD de 98.1 2.6E-05 5.6E-10 94.2 13.3 34 862-895 1-34 (365)
128 PRK06263 sdhA succinate dehydr 98.0 0.001 2.2E-08 85.4 27.4 38 861-899 7-45 (543)
129 PLN02852 ferredoxin-NADP+ redu 98.0 4.8E-06 1E-10 104.5 6.2 49 856-904 21-71 (491)
130 PRK06452 sdhA succinate dehydr 98.0 0.0012 2.5E-08 85.2 27.9 39 861-899 5-43 (566)
131 TIGR00136 gidA glucose-inhibit 98.0 0.00037 8E-09 89.1 22.3 39 862-900 1-39 (617)
132 TIGR00275 flavoprotein, HI0933 98.0 3E-05 6.4E-10 95.6 12.1 37 865-901 1-37 (400)
133 PRK09231 fumarate reductase fl 98.0 0.0012 2.5E-08 85.5 26.7 39 861-899 4-44 (582)
134 PLN02172 flavin-containing mon 98.0 6.8E-06 1.5E-10 102.9 5.7 45 859-903 8-52 (461)
135 PRK13339 malate:quinone oxidor 98.0 6.8E-05 1.5E-09 94.6 14.5 41 860-900 5-47 (497)
136 TIGR01320 mal_quin_oxido malat 98.0 0.0002 4.3E-09 90.5 18.3 39 862-900 1-41 (483)
137 PRK08205 sdhA succinate dehydr 97.9 0.0029 6.3E-08 81.9 29.2 37 861-898 5-41 (583)
138 PRK05257 malate:quinone oxidor 97.9 0.00018 3.9E-09 91.0 17.1 42 860-901 4-47 (494)
139 PRK13984 putative oxidoreducta 97.9 1.6E-05 3.5E-10 102.8 7.0 99 795-902 224-324 (604)
140 KOG2820 FAD-dependent oxidored 97.9 0.0026 5.6E-08 75.0 24.0 45 1114-1164 169-213 (399)
141 PRK09897 hypothetical protein; 97.9 0.00014 3E-09 92.6 14.4 43 861-903 1-46 (534)
142 PRK04176 ribulose-1,5-biphosph 97.8 1.5E-05 3.3E-10 92.5 5.4 41 860-900 24-64 (257)
143 TIGR00292 thiazole biosynthesi 97.8 1.7E-05 3.6E-10 92.1 5.4 41 860-900 20-60 (254)
144 KOG1399 Flavin-containing mono 97.8 1.3E-05 2.9E-10 99.3 4.8 46 860-905 5-50 (448)
145 PTZ00188 adrenodoxin reductase 97.8 2E-05 4.3E-10 98.1 5.9 47 859-905 37-84 (506)
146 PF00996 GDI: GDP dissociation 97.8 0.00017 3.6E-09 89.4 12.7 247 860-1158 3-284 (438)
147 PF06100 Strep_67kDa_ant: Stre 97.7 0.00028 6E-09 87.3 14.1 54 861-914 2-60 (500)
148 PF01494 FAD_binding_3: FAD bi 97.7 2.4E-05 5.2E-10 92.6 4.6 35 862-896 2-36 (356)
149 COG2509 Uncharacterized FAD-de 97.7 0.0023 5.1E-08 78.1 20.8 41 1113-1161 188-228 (486)
150 PF00743 FMO-like: Flavin-bind 97.7 2.9E-05 6.3E-10 98.8 4.8 44 861-904 1-44 (531)
151 PRK05249 soluble pyridine nucl 97.7 3.3E-05 7.1E-10 96.6 5.2 42 861-902 5-46 (461)
152 PLN02661 Putative thiazole syn 97.7 5.9E-05 1.3E-09 90.7 6.6 43 859-901 90-133 (357)
153 COG2072 TrkA Predicted flavopr 97.6 5.6E-05 1.2E-09 94.4 6.2 48 858-905 5-53 (443)
154 PRK06115 dihydrolipoamide dehy 97.6 4.4E-05 9.5E-10 95.9 5.0 42 861-902 3-44 (466)
155 TIGR01292 TRX_reduct thioredox 97.6 5.1E-05 1.1E-09 88.4 5.2 40 862-902 1-40 (300)
156 TIGR01424 gluta_reduc_2 glutat 97.6 4.6E-05 1E-09 95.1 5.1 41 861-902 2-42 (446)
157 TIGR01350 lipoamide_DH dihydro 97.6 5.4E-05 1.2E-09 94.6 5.3 40 862-902 2-41 (461)
158 PF12831 FAD_oxidored: FAD dep 97.6 6E-05 1.3E-09 93.7 5.4 41 863-903 1-41 (428)
159 PRK10262 thioredoxin reductase 97.6 7.9E-05 1.7E-09 88.8 6.0 44 859-903 4-47 (321)
160 TIGR01421 gluta_reduc_1 glutat 97.6 6.5E-05 1.4E-09 94.0 5.3 41 861-902 2-42 (450)
161 TIGR03143 AhpF_homolog putativ 97.6 7.2E-05 1.6E-09 96.0 5.6 42 860-902 3-44 (555)
162 PRK07251 pyridine nucleotide-d 97.6 6.6E-05 1.4E-09 93.4 5.1 41 861-901 3-44 (438)
163 PRK06416 dihydrolipoamide dehy 97.5 7.3E-05 1.6E-09 93.6 5.3 42 860-902 3-44 (462)
164 PF07156 Prenylcys_lyase: Pren 97.5 0.0029 6.3E-08 77.3 18.5 226 1091-1357 116-353 (368)
165 PF13454 NAD_binding_9: FAD-NA 97.5 0.00047 1E-08 74.2 10.5 50 1103-1161 105-155 (156)
166 PRK08163 salicylate hydroxylas 97.5 8.4E-05 1.8E-09 90.7 5.4 37 861-897 4-40 (396)
167 PRK06116 glutathione reductase 97.5 7.1E-05 1.5E-09 93.4 4.7 41 861-902 4-44 (450)
168 PRK05976 dihydrolipoamide dehy 97.5 9.2E-05 2E-09 93.1 5.5 42 860-902 3-44 (472)
169 PRK08010 pyridine nucleotide-d 97.5 8.5E-05 1.8E-09 92.5 5.2 42 861-902 3-45 (441)
170 PRK06467 dihydrolipoamide dehy 97.5 9.5E-05 2.1E-09 93.0 5.6 42 860-901 3-44 (471)
171 PRK06475 salicylate hydroxylas 97.4 0.00013 2.7E-09 89.8 5.3 36 861-896 2-37 (400)
172 TIGR01790 carotene-cycl lycope 97.4 0.00012 2.6E-09 89.2 5.0 36 863-898 1-36 (388)
173 PRK06370 mercuric reductase; V 97.4 0.00014 3E-09 91.2 5.5 40 861-901 5-44 (463)
174 COG0492 TrxB Thioredoxin reduc 97.4 0.00014 3.1E-09 86.5 5.1 45 860-904 2-46 (305)
175 TIGR02360 pbenz_hydroxyl 4-hyd 97.4 0.00013 2.9E-09 89.4 5.0 35 861-895 2-36 (390)
176 PRK06292 dihydrolipoamide dehy 97.4 0.00015 3.2E-09 90.8 5.2 40 861-901 3-42 (460)
177 PRK14694 putative mercuric red 97.4 0.00017 3.8E-09 90.6 5.6 42 859-901 4-45 (468)
178 TIGR02053 MerA mercuric reduct 97.4 0.00016 3.4E-09 90.7 5.2 39 862-901 1-39 (463)
179 PRK07818 dihydrolipoamide dehy 97.4 0.00017 3.8E-09 90.5 5.3 41 861-902 4-44 (466)
180 PF00890 FAD_binding_2: FAD bi 97.3 0.00019 4.2E-09 88.4 5.0 36 863-898 1-36 (417)
181 TIGR01372 soxA sarcosine oxida 97.3 0.00019 4.1E-09 97.8 5.3 44 860-903 162-205 (985)
182 KOG2614 Kynurenine 3-monooxyge 97.3 0.00022 4.7E-09 86.0 5.0 36 861-896 2-37 (420)
183 PRK12770 putative glutamate sy 97.3 0.00028 6E-09 85.5 5.9 46 858-903 15-60 (352)
184 PRK13748 putative mercuric red 97.3 0.00022 4.8E-09 91.5 5.1 42 860-902 97-138 (561)
185 TIGR03140 AhpF alkyl hydropero 97.3 0.00027 5.9E-09 90.0 5.5 41 859-901 210-250 (515)
186 TIGR02485 CobZ_N-term precorri 97.3 0.0015 3.2E-08 81.4 11.9 34 866-899 1-36 (432)
187 TIGR01813 flavo_cyto_c flavocy 97.2 0.00027 5.8E-09 88.0 5.1 38 863-900 1-39 (439)
188 PRK11445 putative oxidoreducta 97.2 0.00025 5.4E-09 85.8 4.7 35 861-896 1-35 (351)
189 PRK06481 fumarate reductase fl 97.2 0.00036 7.9E-09 88.6 6.0 41 860-900 60-100 (506)
190 PRK14727 putative mercuric red 97.2 0.00028 6.1E-09 89.0 5.0 43 860-902 15-57 (479)
191 PRK15317 alkyl hydroperoxide r 97.2 0.00033 7.1E-09 89.3 5.5 41 859-901 209-249 (517)
192 PRK05335 tRNA (uracil-5-)-meth 97.2 0.00035 7.7E-09 86.0 5.3 38 861-898 2-39 (436)
193 PTZ00052 thioredoxin reductase 97.2 0.00032 6.9E-09 89.0 5.0 40 861-900 5-52 (499)
194 PLN02927 antheraxanthin epoxid 97.2 0.00035 7.5E-09 90.7 5.0 36 859-894 79-114 (668)
195 PRK08274 tricarballylate dehyd 97.1 0.00043 9.3E-09 86.9 5.5 40 860-899 3-44 (466)
196 PTZ00058 glutathione reductase 97.1 0.00044 9.4E-09 88.8 5.6 44 858-902 45-88 (561)
197 PRK06327 dihydrolipoamide dehy 97.1 0.00045 9.8E-09 87.1 5.3 41 861-901 4-50 (475)
198 PRK07121 hypothetical protein; 97.1 0.00049 1.1E-08 87.1 5.6 41 860-900 19-59 (492)
199 PRK11101 glpA sn-glycerol-3-ph 97.1 0.00053 1.1E-08 88.0 5.6 37 860-896 5-41 (546)
200 PLN02985 squalene monooxygenas 97.1 0.0006 1.3E-08 86.8 5.9 37 859-895 41-77 (514)
201 PLN02507 glutathione reductase 97.1 0.00055 1.2E-08 86.9 5.5 44 859-902 23-75 (499)
202 PRK12842 putative succinate de 97.1 0.00059 1.3E-08 88.0 5.8 43 860-902 8-50 (574)
203 PLN02463 lycopene beta cyclase 97.0 0.00062 1.3E-08 85.2 5.6 37 858-894 25-61 (447)
204 PF07992 Pyr_redox_2: Pyridine 97.0 0.00067 1.5E-08 74.5 4.9 31 863-893 1-31 (201)
205 TIGR00137 gid_trmFO tRNA:m(5)U 97.0 0.00058 1.2E-08 84.6 4.8 36 863-898 2-37 (433)
206 PRK05192 tRNA uridine 5-carbox 97.0 0.00061 1.3E-08 87.3 5.1 40 860-899 3-43 (618)
207 PF00070 Pyr_redox: Pyridine n 97.0 0.00097 2.1E-08 63.5 5.2 35 863-897 1-35 (80)
208 KOG2415 Electron transfer flav 97.0 0.00066 1.4E-08 81.1 4.4 46 859-904 74-125 (621)
209 PTZ00367 squalene epoxidase; P 97.0 0.00073 1.6E-08 86.8 5.3 35 860-894 32-66 (567)
210 KOG2404 Fumarate reductase, fl 96.9 0.0043 9.4E-08 72.4 10.5 42 863-904 11-52 (477)
211 PRK12834 putative FAD-binding 96.9 0.00083 1.8E-08 86.3 5.3 42 860-901 3-46 (549)
212 PLN02546 glutathione reductase 96.9 0.00086 1.9E-08 86.1 5.3 34 859-892 77-110 (558)
213 PRK12837 3-ketosteroid-delta-1 96.9 0.0009 2E-08 85.3 5.3 40 860-900 6-45 (513)
214 PRK07845 flavoprotein disulfid 96.8 0.0011 2.3E-08 83.6 5.3 41 861-902 1-41 (466)
215 TIGR01423 trypano_reduc trypan 96.8 0.001 2.3E-08 84.1 5.2 43 860-902 2-53 (486)
216 PRK06912 acoL dihydrolipoamide 96.8 0.001 2.3E-08 83.4 5.2 39 863-902 2-40 (458)
217 PRK12844 3-ketosteroid-delta-1 96.8 0.0012 2.6E-08 84.9 5.5 41 860-900 5-45 (557)
218 PRK12835 3-ketosteroid-delta-1 96.8 0.0012 2.5E-08 85.5 5.2 40 860-899 10-49 (584)
219 PRK08294 phenol 2-monooxygenas 96.8 0.0011 2.4E-08 86.4 5.0 37 859-895 30-67 (634)
220 PRK12839 hypothetical protein; 96.8 0.0016 3.5E-08 84.0 6.0 44 859-902 6-49 (572)
221 COG1249 Lpd Pyruvate/2-oxoglut 96.7 0.0015 3.2E-08 81.8 5.4 43 860-902 3-45 (454)
222 KOG2844 Dimethylglycine dehydr 96.7 0.0084 1.8E-07 75.7 11.7 40 1114-1162 203-242 (856)
223 COG4716 Myosin-crossreactive a 96.7 0.0017 3.7E-08 76.7 5.4 52 860-911 21-77 (587)
224 PF06039 Mqo: Malate:quinone o 96.7 0.021 4.5E-07 70.6 14.8 40 860-899 2-43 (488)
225 PRK08255 salicylyl-CoA 5-hydro 96.7 0.0013 2.9E-08 87.6 5.0 34 862-895 1-36 (765)
226 KOG1800 Ferredoxin/adrenodoxin 96.7 0.0015 3.3E-08 77.7 4.8 48 858-905 17-66 (468)
227 TIGR01812 sdhA_frdA_Gneg succi 96.7 0.0014 3.1E-08 84.4 5.0 37 863-899 1-37 (566)
228 TIGR03197 MnmC_Cterm tRNA U-34 96.7 0.23 5E-06 60.9 23.9 52 1103-1163 135-190 (381)
229 PRK07843 3-ketosteroid-delta-1 96.7 0.0017 3.7E-08 83.6 5.6 41 861-901 7-47 (557)
230 PF01134 GIDA: Glucose inhibit 96.7 0.0017 3.6E-08 79.5 5.1 41 863-903 1-42 (392)
231 PTZ00153 lipoamide dehydrogena 96.7 0.0017 3.7E-08 84.7 5.3 44 859-902 114-158 (659)
232 PRK08641 sdhA succinate dehydr 96.6 0.0018 3.9E-08 83.9 5.3 39 861-899 3-41 (589)
233 TIGR02462 pyranose_ox pyranose 96.6 0.0018 4E-08 82.5 5.0 37 862-898 1-37 (544)
234 PRK07804 L-aspartate oxidase; 96.6 0.0019 4.1E-08 82.9 5.1 40 860-899 15-54 (541)
235 PF00732 GMC_oxred_N: GMC oxid 96.6 0.0015 3.3E-08 76.7 3.8 37 862-898 1-38 (296)
236 COG3573 Predicted oxidoreducta 96.6 0.0021 4.7E-08 74.9 4.8 40 861-900 5-46 (552)
237 PRK06134 putative FAD-binding 96.6 0.0024 5.1E-08 82.7 5.8 44 859-902 10-53 (581)
238 PRK08401 L-aspartate oxidase; 96.6 0.0021 4.6E-08 81.0 5.2 33 862-894 2-34 (466)
239 KOG1439 RAB proteins geranylge 96.5 0.028 6E-07 68.0 13.7 43 862-904 5-47 (440)
240 PRK12845 3-ketosteroid-delta-1 96.5 0.0026 5.7E-08 82.0 5.5 42 859-901 14-55 (564)
241 PRK07573 sdhA succinate dehydr 96.5 0.0033 7.1E-08 82.2 6.4 39 860-898 34-72 (640)
242 TIGR01438 TGR thioredoxin and 96.5 0.0025 5.4E-08 80.7 5.2 33 861-893 2-34 (484)
243 PRK07057 sdhA succinate dehydr 96.5 0.0027 5.9E-08 82.3 5.3 41 860-900 11-51 (591)
244 PRK08958 sdhA succinate dehydr 96.4 0.0029 6.2E-08 82.0 5.1 39 861-899 7-45 (588)
245 PTZ00139 Succinate dehydrogena 96.4 0.0029 6.4E-08 82.4 5.1 40 860-899 28-67 (617)
246 PRK12843 putative FAD-binding 96.4 0.0034 7.4E-08 81.2 5.6 43 860-902 15-57 (578)
247 PLN00128 Succinate dehydrogena 96.4 0.0031 6.6E-08 82.4 5.1 40 860-899 49-88 (635)
248 PRK06175 L-aspartate oxidase; 96.4 0.003 6.5E-08 78.9 4.7 38 861-899 4-41 (433)
249 PRK09078 sdhA succinate dehydr 96.4 0.0032 6.9E-08 81.8 5.1 40 860-899 11-50 (598)
250 TIGR00551 nadB L-aspartate oxi 96.4 0.0034 7.4E-08 79.6 5.2 37 862-899 3-39 (488)
251 PRK07395 L-aspartate oxidase; 96.4 0.0035 7.5E-08 80.7 5.3 40 859-899 7-46 (553)
252 PLN02815 L-aspartate oxidase 96.3 0.0033 7.2E-08 81.4 4.9 39 860-899 28-66 (594)
253 PF08711 Med26: TFIIS helical 96.3 0.0034 7.3E-08 55.6 3.4 51 1471-1522 1-52 (53)
254 PTZ00306 NADH-dependent fumara 96.3 0.0037 8E-08 86.8 5.3 41 860-900 408-448 (1167)
255 PRK06854 adenylylsulfate reduc 96.3 0.0037 8.1E-08 81.3 4.9 37 861-897 11-49 (608)
256 PRK08626 fumarate reductase fl 96.2 0.004 8.7E-08 81.7 5.0 39 861-899 5-43 (657)
257 TIGR01811 sdhA_Bsu succinate d 96.2 0.0036 7.8E-08 81.4 4.4 35 864-898 1-35 (603)
258 PRK08275 putative oxidoreducta 96.1 0.0049 1.1E-07 79.4 4.9 39 860-898 8-48 (554)
259 COG3075 GlpB Anaerobic glycero 96.0 0.006 1.3E-07 71.7 4.5 32 861-892 2-33 (421)
260 PRK05329 anaerobic glycerol-3- 96.0 0.0065 1.4E-07 75.6 5.2 34 861-894 2-35 (422)
261 PRK08071 L-aspartate oxidase; 96.0 0.0054 1.2E-07 78.2 4.6 38 861-899 3-40 (510)
262 TIGR01176 fum_red_Fp fumarate 96.0 0.0062 1.3E-07 78.8 4.9 40 861-900 3-44 (580)
263 PRK09564 coenzyme A disulfide 96.0 0.006 1.3E-07 76.1 4.6 36 862-897 1-38 (444)
264 KOG2852 Possible oxidoreductas 95.9 0.0034 7.3E-08 72.5 1.6 42 858-899 7-54 (380)
265 KOG1298 Squalene monooxygenase 95.9 0.0071 1.5E-07 72.3 4.3 36 858-893 42-77 (509)
266 PRK09077 L-aspartate oxidase; 95.9 0.0074 1.6E-07 77.5 4.9 39 860-899 7-45 (536)
267 PRK13512 coenzyme A disulfide 95.9 0.0076 1.6E-07 75.4 4.9 37 861-897 1-39 (438)
268 PRK02106 choline dehydrogenase 95.9 0.0081 1.7E-07 77.5 5.2 35 860-894 4-39 (560)
269 TIGR02061 aprA adenosine phosp 95.9 0.0076 1.6E-07 78.3 4.9 33 863-895 1-37 (614)
270 COG0446 HcaD Uncharacterized N 95.8 0.0091 2E-07 72.6 4.9 41 861-901 136-176 (415)
271 KOG1335 Dihydrolipoamide dehyd 95.7 0.0092 2E-07 71.3 4.2 43 860-902 38-80 (506)
272 PRK09754 phenylpropionate diox 95.7 0.011 2.5E-07 72.7 5.1 37 861-897 3-41 (396)
273 COG1053 SdhA Succinate dehydro 95.6 0.011 2.5E-07 75.9 5.0 43 860-902 5-47 (562)
274 PRK07846 mycothione reductase; 95.6 0.011 2.4E-07 74.4 4.6 38 862-902 2-39 (451)
275 cd02931 ER_like_FMN Enoate red 95.6 0.0044 9.5E-08 76.3 1.0 68 781-848 288-369 (382)
276 TIGR03452 mycothione_red mycot 95.6 0.011 2.4E-07 74.3 4.6 39 861-902 2-40 (452)
277 cd02929 TMADH_HD_FMN Trimethyl 95.5 0.0036 7.7E-08 76.7 -0.0 66 784-849 275-353 (370)
278 KOG2960 Protein involved in th 95.3 0.0069 1.5E-07 67.1 1.2 68 861-946 76-145 (328)
279 KOG0042 Glycerol-3-phosphate d 95.2 0.16 3.4E-06 63.6 12.4 41 859-899 65-105 (680)
280 PRK07512 L-aspartate oxidase; 95.2 0.016 3.5E-07 74.1 4.2 38 860-899 8-46 (513)
281 COG1206 Gid NAD(FAD)-utilizing 95.1 0.017 3.7E-07 68.0 3.9 40 861-900 3-42 (439)
282 PRK13800 putative oxidoreducta 95.1 0.021 4.5E-07 77.7 5.1 36 860-895 12-47 (897)
283 TIGR01810 betA choline dehydro 95.0 0.017 3.6E-07 74.2 3.8 32 863-894 1-33 (532)
284 PF04820 Trp_halogenase: Trypt 95.0 0.019 4.2E-07 72.2 4.1 56 1099-1162 153-210 (454)
285 TIGR03378 glycerol3P_GlpB glyc 94.9 0.025 5.4E-07 70.2 4.7 33 862-894 1-33 (419)
286 PTZ00318 NADH dehydrogenase-li 94.9 0.023 4.9E-07 70.9 4.4 37 859-895 8-44 (424)
287 COG5259 RSC8 RSC chromatin rem 94.6 0.036 7.8E-07 67.4 4.9 112 601-718 46-163 (531)
288 KOG1279 Chromatin remodeling f 94.4 0.024 5.2E-07 71.2 2.9 88 611-704 51-141 (506)
289 COG3634 AhpF Alkyl hydroperoxi 94.4 0.024 5.1E-07 67.1 2.6 43 858-902 208-250 (520)
290 COG2303 BetA Choline dehydroge 94.4 0.036 7.7E-07 71.4 4.4 36 858-893 4-39 (542)
291 KOG2665 Predicted FAD-dependen 94.2 0.043 9.3E-07 64.4 4.1 47 858-904 45-93 (453)
292 PF01210 NAD_Gly3P_dh_N: NAD-d 94.2 0.046 9.9E-07 59.1 4.1 33 863-895 1-33 (157)
293 KOG2853 Possible oxidoreductas 93.9 0.049 1.1E-06 64.4 3.8 47 859-905 84-143 (509)
294 COG1902 NemA NADH:flavin oxido 93.8 0.016 3.5E-07 70.6 -0.1 65 783-847 273-351 (363)
295 cd02930 DCR_FMN 2,4-dienoyl-Co 93.8 0.017 3.7E-07 70.4 -0.1 67 782-848 260-340 (353)
296 PRK04965 NADH:flavorubredoxin 93.5 0.078 1.7E-06 64.9 5.0 41 1112-1161 197-237 (377)
297 PRK09754 phenylpropionate diox 93.5 0.079 1.7E-06 65.4 5.0 38 861-898 144-181 (396)
298 PRK02705 murD UDP-N-acetylmura 93.4 0.073 1.6E-06 67.0 4.6 34 863-896 2-35 (459)
299 PLN02785 Protein HOTHEAD 93.4 0.07 1.5E-06 69.3 4.6 35 859-894 53-87 (587)
300 PRK01438 murD UDP-N-acetylmura 93.4 0.081 1.8E-06 67.0 5.0 36 860-895 15-50 (480)
301 TIGR03169 Nterm_to_SelD pyridi 93.4 0.067 1.5E-06 65.0 4.1 33 863-895 1-36 (364)
302 COG4529 Uncharacterized protei 93.3 0.088 1.9E-06 65.5 4.9 39 861-900 1-43 (474)
303 cd00183 TFIIS_I N-terminal dom 93.2 0.1 2.2E-06 49.9 4.2 55 1467-1522 21-75 (76)
304 PRK07251 pyridine nucleotide-d 92.9 0.12 2.6E-06 64.6 5.4 38 861-898 157-194 (438)
305 cd04734 OYE_like_3_FMN Old yel 92.6 0.037 8.1E-07 67.3 0.3 53 781-833 268-324 (343)
306 PRK04965 NADH:flavorubredoxin 92.5 0.14 3.1E-06 62.6 5.2 37 861-897 141-177 (377)
307 COG1249 Lpd Pyruvate/2-oxoglut 92.3 0.15 3.3E-06 64.2 5.1 39 859-897 171-209 (454)
308 PF02737 3HCDH_N: 3-hydroxyacy 92.3 0.14 3.1E-06 56.7 4.4 33 863-895 1-33 (180)
309 PRK05976 dihydrolipoamide dehy 92.2 0.15 3.2E-06 64.5 5.0 36 861-896 180-215 (472)
310 COG1252 Ndh NADH dehydrogenase 92.2 0.16 3.4E-06 63.0 4.9 36 860-895 2-39 (405)
311 KOG0404 Thioredoxin reductase 91.9 0.17 3.8E-06 57.0 4.4 44 861-904 8-55 (322)
312 TIGR01350 lipoamide_DH dihydro 91.9 0.19 4.1E-06 63.2 5.4 37 861-897 170-206 (461)
313 PRK14989 nitrite reductase sub 91.9 0.17 3.6E-06 68.5 5.1 37 861-897 3-43 (847)
314 TIGR02352 thiamin_ThiO glycine 91.8 4.6 0.0001 48.1 16.7 42 1112-1163 151-193 (337)
315 TIGR02053 MerA mercuric reduct 91.7 0.2 4.3E-06 63.2 5.2 36 862-897 167-202 (463)
316 PRK06292 dihydrolipoamide dehy 91.7 0.2 4.4E-06 63.0 5.3 38 861-898 169-206 (460)
317 PRK05249 soluble pyridine nucl 91.6 0.22 4.7E-06 62.7 5.4 37 861-897 175-211 (461)
318 PRK06370 mercuric reductase; V 91.5 0.21 4.7E-06 62.9 5.3 38 861-898 171-208 (463)
319 TIGR01421 gluta_reduc_1 glutat 91.5 0.22 4.8E-06 62.7 5.4 37 861-897 166-202 (450)
320 PRK13512 coenzyme A disulfide 91.5 0.2 4.3E-06 62.9 4.9 38 861-898 148-185 (438)
321 smart00509 TFS2N Domain in the 91.5 0.23 5.1E-06 47.4 4.2 54 1469-1523 21-74 (75)
322 KOG0405 Pyridine nucleotide-di 91.4 0.2 4.4E-06 59.7 4.4 44 859-902 18-61 (478)
323 COG0029 NadB Aspartate oxidase 91.4 0.13 2.9E-06 64.0 3.1 32 863-895 9-40 (518)
324 PRK06416 dihydrolipoamide dehy 91.3 0.24 5.1E-06 62.4 5.4 37 861-897 172-208 (462)
325 COG0445 GidA Flavin-dependent 91.3 0.16 3.4E-06 64.0 3.6 33 861-893 4-36 (621)
326 PRK06115 dihydrolipoamide dehy 91.2 0.25 5.5E-06 62.5 5.5 37 861-897 174-210 (466)
327 PRK06467 dihydrolipoamide dehy 91.1 0.26 5.6E-06 62.5 5.4 37 861-897 174-210 (471)
328 PRK06912 acoL dihydrolipoamide 91.1 0.24 5.2E-06 62.5 5.1 37 861-897 170-206 (458)
329 PRK07846 mycothione reductase; 91.1 0.26 5.6E-06 62.2 5.3 37 861-897 166-202 (451)
330 PF03721 UDPG_MGDP_dh_N: UDP-g 91.1 0.17 3.7E-06 56.3 3.4 34 862-895 1-34 (185)
331 PF02558 ApbA: Ketopantoate re 91.1 0.24 5.1E-06 52.6 4.3 31 864-894 1-31 (151)
332 PRK14106 murD UDP-N-acetylmura 90.9 0.25 5.5E-06 61.9 5.0 35 860-894 4-38 (450)
333 TIGR02374 nitri_red_nirB nitri 90.7 0.21 4.6E-06 67.2 4.3 34 864-897 1-37 (785)
334 TIGR03385 CoA_CoA_reduc CoA-di 90.6 0.28 6.1E-06 61.1 5.1 36 861-896 137-172 (427)
335 PRK06129 3-hydroxyacyl-CoA deh 90.5 0.27 6E-06 58.8 4.6 34 862-895 3-36 (308)
336 TIGR03452 mycothione_red mycot 90.5 0.3 6.4E-06 61.6 5.2 37 861-897 169-205 (452)
337 PRK07818 dihydrolipoamide dehy 90.4 0.29 6.3E-06 61.8 5.0 37 861-897 172-208 (466)
338 KOG4716 Thioredoxin reductase 90.4 0.25 5.5E-06 58.6 4.0 35 858-892 16-50 (503)
339 PRK06327 dihydrolipoamide dehy 90.4 0.33 7E-06 61.6 5.4 37 861-897 183-219 (475)
340 COG5044 MRS6 RAB proteins gera 90.1 2.8 6.1E-05 51.0 12.2 46 859-904 4-49 (434)
341 PRK07845 flavoprotein disulfid 89.7 0.4 8.7E-06 60.7 5.4 38 862-899 178-215 (466)
342 PF01262 AlaDh_PNT_C: Alanine 89.7 0.4 8.7E-06 52.4 4.7 35 860-894 19-53 (168)
343 PRK08293 3-hydroxybutyryl-CoA 89.4 0.37 8.1E-06 57.1 4.5 32 862-893 4-35 (287)
344 PRK04148 hypothetical protein; 89.3 0.69 1.5E-05 49.1 5.9 86 860-949 16-109 (134)
345 TIGR02374 nitri_red_nirB nitri 89.3 0.39 8.3E-06 64.8 5.0 36 861-896 140-175 (785)
346 PRK09564 coenzyme A disulfide 89.2 0.45 9.7E-06 59.6 5.3 37 861-897 149-185 (444)
347 PRK07066 3-hydroxybutyryl-CoA 89.2 0.48 1E-05 57.3 5.2 34 861-894 7-40 (321)
348 TIGR03140 AhpF alkyl hydropero 89.1 0.41 8.9E-06 61.4 4.9 35 861-895 352-386 (515)
349 PTZ00153 lipoamide dehydrogena 89.0 0.45 9.7E-06 62.8 5.2 38 861-898 312-349 (659)
350 COG0771 MurD UDP-N-acetylmuram 89.0 0.73 1.6E-05 57.9 6.8 83 861-946 7-97 (448)
351 PRK09260 3-hydroxybutyryl-CoA 89.0 0.41 8.8E-06 56.7 4.4 34 862-895 2-35 (288)
352 PRK06249 2-dehydropantoate 2-r 88.9 0.5 1.1E-05 56.7 5.1 34 860-893 4-37 (313)
353 PF13738 Pyr_redox_3: Pyridine 88.9 0.4 8.6E-06 52.9 4.0 35 860-894 166-200 (203)
354 PRK05708 2-dehydropantoate 2-r 88.7 0.48 1.1E-05 56.7 4.9 33 861-893 2-34 (305)
355 PTZ00058 glutathione reductase 88.6 0.5 1.1E-05 61.3 5.2 37 861-897 237-273 (561)
356 PRK07819 3-hydroxybutyryl-CoA 88.6 0.41 9E-06 56.9 4.1 34 862-895 6-39 (286)
357 PRK07530 3-hydroxybutyryl-CoA 88.4 0.47 1E-05 56.3 4.5 34 861-894 4-37 (292)
358 COG0569 TrkA K+ transport syst 88.4 0.49 1.1E-05 54.4 4.4 66 862-945 1-66 (225)
359 PRK06522 2-dehydropantoate 2-r 88.3 0.5 1.1E-05 55.9 4.6 32 862-893 1-32 (304)
360 TIGR01316 gltA glutamate synth 88.2 0.53 1.2E-05 59.4 5.0 35 860-894 271-305 (449)
361 TIGR01790 carotene-cycl lycope 88.1 74 0.0016 39.0 23.7 42 1113-1163 100-141 (388)
362 TIGR01424 gluta_reduc_2 glutat 88.1 0.55 1.2E-05 59.1 5.0 36 861-896 166-201 (446)
363 PRK06116 glutathione reductase 88.1 0.56 1.2E-05 59.0 5.1 36 861-896 167-202 (450)
364 PRK15317 alkyl hydroperoxide r 88.0 0.54 1.2E-05 60.3 4.9 36 860-895 350-385 (517)
365 PRK14989 nitrite reductase sub 87.9 0.53 1.1E-05 63.9 5.0 37 861-897 145-181 (847)
366 PRK08229 2-dehydropantoate 2-r 87.9 0.57 1.2E-05 56.6 4.8 33 861-893 2-34 (341)
367 PRK08010 pyridine nucleotide-d 87.9 0.65 1.4E-05 58.3 5.4 37 861-897 158-194 (441)
368 cd04733 OYE_like_2_FMN Old yel 87.8 0.15 3.3E-06 61.9 -0.2 56 781-836 275-334 (338)
369 PRK12921 2-dehydropantoate 2-r 87.8 0.56 1.2E-05 55.6 4.6 31 862-892 1-31 (305)
370 PRK10262 thioredoxin reductase 87.7 0.64 1.4E-05 55.6 5.0 35 861-895 146-180 (321)
371 TIGR03143 AhpF_homolog putativ 87.7 0.56 1.2E-05 60.8 4.8 36 861-896 143-178 (555)
372 PRK12831 putative oxidoreducta 87.7 0.63 1.4E-05 59.0 5.2 36 859-894 279-314 (464)
373 PLN02507 glutathione reductase 87.6 0.61 1.3E-05 59.7 5.0 36 861-896 203-238 (499)
374 PRK13523 NADPH dehydrogenase N 87.4 0.21 4.5E-06 60.8 0.6 53 784-836 261-317 (337)
375 PRK06035 3-hydroxyacyl-CoA deh 87.3 0.6 1.3E-05 55.4 4.4 33 862-894 4-36 (291)
376 PLN02546 glutathione reductase 87.2 0.69 1.5E-05 60.0 5.2 37 861-897 252-288 (558)
377 PLN02463 lycopene beta cyclase 86.8 46 0.001 42.4 20.9 40 1113-1162 129-168 (447)
378 TIGR01423 trypano_reduc trypan 86.8 0.74 1.6E-05 58.8 5.1 37 861-897 187-226 (486)
379 TIGR01470 cysG_Nterm siroheme 86.8 0.84 1.8E-05 51.8 5.0 34 860-893 8-41 (205)
380 TIGR01292 TRX_reduct thioredox 86.7 0.78 1.7E-05 53.5 4.9 34 861-894 141-174 (300)
381 PRK13748 putative mercuric red 86.6 0.77 1.7E-05 59.4 5.2 33 861-893 270-302 (561)
382 KOG3855 Monooxygenase involved 86.4 0.84 1.8E-05 56.0 4.9 42 858-899 33-80 (481)
383 KOG3923 D-aspartate oxidase [A 86.4 0.54 1.2E-05 55.4 3.2 31 861-891 3-40 (342)
384 PF01488 Shikimate_DH: Shikima 86.3 1.1 2.3E-05 47.5 5.1 35 859-893 10-45 (135)
385 PRK11199 tyrA bifunctional cho 86.3 0.82 1.8E-05 56.5 4.9 66 828-893 65-131 (374)
386 PRK12770 putative glutamate sy 85.9 0.87 1.9E-05 55.4 4.9 34 861-894 172-206 (352)
387 PRK14694 putative mercuric red 85.8 0.95 2.1E-05 57.4 5.3 32 861-892 178-209 (468)
388 TIGR01763 MalateDH_bact malate 85.7 0.93 2E-05 54.5 4.9 35 861-895 1-36 (305)
389 PRK14618 NAD(P)H-dependent gly 85.6 0.94 2E-05 54.7 4.9 34 861-894 4-37 (328)
390 PRK04690 murD UDP-N-acetylmura 85.6 0.85 1.8E-05 57.9 4.7 35 861-895 8-42 (468)
391 COG1004 Ugd Predicted UDP-gluc 85.5 0.82 1.8E-05 56.0 4.3 33 862-894 1-33 (414)
392 PRK05808 3-hydroxybutyryl-CoA 85.5 0.85 1.8E-05 53.8 4.4 33 862-894 4-36 (282)
393 PF13241 NAD_binding_7: Putati 85.4 0.59 1.3E-05 47.0 2.6 34 860-893 6-39 (103)
394 cd01080 NAD_bind_m-THF_DH_Cycl 85.4 1.1 2.3E-05 49.5 4.8 35 859-893 42-77 (168)
395 PRK01710 murD UDP-N-acetylmura 85.3 0.9 2E-05 57.5 4.8 34 861-894 14-47 (458)
396 PRK14727 putative mercuric red 85.3 1 2.2E-05 57.3 5.3 33 861-893 188-220 (479)
397 PRK03369 murD UDP-N-acetylmura 85.3 0.91 2E-05 58.0 4.8 34 860-893 11-44 (488)
398 PRK09424 pntA NAD(P) transhydr 85.1 0.93 2E-05 58.0 4.7 36 859-894 163-198 (509)
399 TIGR01438 TGR thioredoxin and 85.1 1 2.2E-05 57.4 5.2 31 862-892 181-211 (484)
400 COG0686 Ald Alanine dehydrogen 85.0 0.63 1.4E-05 55.2 2.9 48 858-905 165-220 (371)
401 TIGR01816 sdhA_forward succina 85.0 40 0.00086 44.2 19.5 41 1312-1353 350-397 (565)
402 PRK02472 murD UDP-N-acetylmura 84.9 0.97 2.1E-05 56.7 4.8 34 861-894 5-38 (447)
403 PTZ00052 thioredoxin reductase 84.8 1.1 2.4E-05 57.4 5.3 31 862-892 183-213 (499)
404 PRK04308 murD UDP-N-acetylmura 84.6 1.1 2.5E-05 56.3 5.2 35 861-895 5-39 (445)
405 PRK00094 gpsA NAD(P)H-dependen 84.5 1 2.3E-05 53.8 4.6 33 862-894 2-34 (325)
406 PRK06718 precorrin-2 dehydroge 84.4 1.3 2.8E-05 50.1 5.1 35 859-893 8-42 (202)
407 TIGR00518 alaDH alanine dehydr 84.4 1.1 2.4E-05 55.3 4.9 35 860-894 166-200 (370)
408 PRK14619 NAD(P)H-dependent gly 84.4 1.2 2.6E-05 53.4 5.0 35 860-894 3-37 (308)
409 PRK11064 wecC UDP-N-acetyl-D-m 84.4 0.9 1.9E-05 56.9 4.1 34 862-895 4-37 (415)
410 PRK06719 precorrin-2 dehydroge 84.2 1.3 2.8E-05 48.2 4.7 34 858-891 10-43 (157)
411 COG3634 AhpF Alkyl hydroperoxi 84.2 0.99 2.1E-05 54.0 4.0 36 860-895 353-388 (520)
412 PF13434 K_oxygenase: L-lysine 84.1 0.7 1.5E-05 56.3 2.9 36 861-896 2-38 (341)
413 PLN02545 3-hydroxybutyryl-CoA 84.0 1.2 2.7E-05 52.8 4.9 34 861-894 4-37 (295)
414 PRK06130 3-hydroxybutyryl-CoA 83.9 1.1 2.4E-05 53.5 4.5 34 861-894 4-37 (311)
415 cd05292 LDH_2 A subgroup of L- 83.8 1.2 2.6E-05 53.6 4.7 37 862-898 1-40 (308)
416 PRK14620 NAD(P)H-dependent gly 83.8 1.1 2.4E-05 54.0 4.5 32 863-894 2-33 (326)
417 TIGR03026 NDP-sugDHase nucleot 83.5 0.99 2.2E-05 56.3 4.0 34 863-896 2-35 (411)
418 PRK08255 salicylyl-CoA 5-hydro 83.4 0.31 6.8E-06 65.5 -0.5 65 785-849 674-755 (765)
419 PRK01368 murD UDP-N-acetylmura 83.3 1.2 2.7E-05 56.3 4.7 33 860-893 5-37 (454)
420 PLN02411 12-oxophytodienoate r 83.2 0.26 5.6E-06 61.1 -1.3 51 786-837 301-355 (391)
421 PTZ00318 NADH dehydrogenase-li 83.1 1.4 3.1E-05 55.1 5.1 36 861-896 173-222 (424)
422 KOG2311 NAD/FAD-utilizing prot 83.0 1.4 3E-05 54.8 4.7 40 858-897 25-65 (679)
423 PRK11749 dihydropyrimidine deh 83.0 1.4 3E-05 55.7 5.0 35 860-894 272-307 (457)
424 PRK12778 putative bifunctional 82.7 1.4 3.1E-05 59.2 5.2 36 859-894 568-604 (752)
425 cd02933 OYE_like_FMN Old yello 82.6 0.3 6.5E-06 59.4 -1.0 52 784-836 271-326 (338)
426 PF00724 Oxidored_FMN: NADH:fl 82.4 0.2 4.3E-06 61.0 -2.7 53 785-837 278-334 (341)
427 TIGR02354 thiF_fam2 thiamine b 82.4 1.7 3.6E-05 49.2 4.8 34 860-893 20-54 (200)
428 cd00401 AdoHcyase S-adenosyl-L 82.2 1.5 3.4E-05 54.7 4.9 36 859-894 200-235 (413)
429 TIGR02279 PaaC-3OHAcCoADH 3-hy 82.1 1.4 2.9E-05 56.7 4.4 35 861-895 5-39 (503)
430 PF03446 NAD_binding_2: NAD bi 82.0 1.7 3.6E-05 47.3 4.5 34 861-894 1-34 (163)
431 PLN02927 antheraxanthin epoxid 81.8 1.7E+02 0.0037 39.3 23.3 51 1103-1162 194-247 (668)
432 PRK00421 murC UDP-N-acetylmura 81.6 1.5 3.2E-05 55.5 4.6 36 860-895 6-42 (461)
433 PRK08268 3-hydroxy-acyl-CoA de 81.4 1.5 3.2E-05 56.4 4.5 35 861-895 7-41 (507)
434 PRK08306 dipicolinate synthase 81.3 1.8 4E-05 51.8 4.9 36 860-895 151-186 (296)
435 KOG1238 Glucose dehydrogenase/ 81.1 1.4 3.1E-05 56.8 4.1 39 858-896 54-93 (623)
436 PRK07531 bifunctional 3-hydrox 81.0 1.6 3.4E-05 56.0 4.4 33 862-894 5-37 (495)
437 PRK00141 murD UDP-N-acetylmura 80.3 2 4.3E-05 54.7 5.1 35 859-893 13-47 (473)
438 KOG1335 Dihydrolipoamide dehyd 80.3 0.92 2E-05 55.1 1.9 41 860-900 210-250 (506)
439 PRK02006 murD UDP-N-acetylmura 80.0 1.8 4E-05 55.3 4.7 34 861-894 7-40 (498)
440 cd01075 NAD_bind_Leu_Phe_Val_D 79.9 2.4 5.2E-05 47.9 5.0 36 859-894 26-61 (200)
441 COG1893 ApbA Ketopantoate redu 79.8 1.8 3.9E-05 52.2 4.2 34 862-895 1-34 (307)
442 PRK11730 fadB multifunctional 79.7 1.7 3.6E-05 58.2 4.3 36 860-895 312-347 (715)
443 TIGR00561 pntA NAD(P) transhyd 79.6 2 4.4E-05 54.9 4.8 36 860-895 163-198 (511)
444 PRK06223 malate dehydrogenase; 79.4 2.3 5E-05 50.9 4.9 35 861-895 2-37 (307)
445 PRK07417 arogenate dehydrogena 79.1 1.9 4.1E-05 51.0 4.1 32 863-894 2-33 (279)
446 TIGR02437 FadB fatty oxidation 79.0 2 4.4E-05 57.4 4.8 37 859-895 311-347 (714)
447 cd05291 HicDH_like L-2-hydroxy 79.0 2.3 4.9E-05 51.1 4.7 34 862-895 1-36 (306)
448 COG1252 Ndh NADH dehydrogenase 78.8 1.4 3E-05 54.8 2.9 26 860-885 154-179 (405)
449 PRK10605 N-ethylmaleimide redu 78.7 0.47 1E-05 58.3 -1.1 50 788-838 282-335 (362)
450 KOG3851 Sulfide:quinone oxidor 78.7 1.9 4.2E-05 51.3 3.8 38 858-895 36-75 (446)
451 PRK12779 putative bifunctional 78.1 2.3 5E-05 58.5 5.0 35 860-894 446-480 (944)
452 PRK06175 L-aspartate oxidase; 78.1 83 0.0018 39.8 18.3 40 1312-1352 341-387 (433)
453 COG1748 LYS9 Saccharopine dehy 78.1 2.4 5.2E-05 52.5 4.6 33 861-893 1-34 (389)
454 COG1250 FadB 3-hydroxyacyl-CoA 78.0 2.1 4.5E-05 51.5 3.9 33 861-893 3-35 (307)
455 PRK15057 UDP-glucose 6-dehydro 77.9 2.2 4.7E-05 53.1 4.2 33 863-896 2-34 (388)
456 PRK12549 shikimate 5-dehydroge 77.9 2.8 6E-05 50.0 4.9 35 860-894 126-161 (284)
457 cd05191 NAD_bind_amino_acid_DH 77.5 3.8 8.1E-05 39.8 4.9 34 859-892 21-55 (86)
458 TIGR03377 glycerol3P_GlpA glyc 77.4 1E+02 0.0022 39.9 19.2 43 1112-1162 142-189 (516)
459 TIGR02853 spore_dpaA dipicolin 77.3 2.7 5.8E-05 50.2 4.6 36 860-895 150-185 (287)
460 KOG2755 Oxidoreductase [Genera 77.2 1.5 3.2E-05 51.1 2.3 34 863-896 1-36 (334)
461 TIGR02441 fa_ox_alpha_mit fatt 76.9 2.6 5.7E-05 56.5 4.9 37 859-895 333-369 (737)
462 PRK08071 L-aspartate oxidase; 76.8 58 0.0013 42.1 16.7 39 1312-1351 342-387 (510)
463 TIGR01915 npdG NADPH-dependent 76.7 2.9 6.4E-05 47.6 4.6 33 862-894 1-34 (219)
464 PLN02353 probable UDP-glucose 76.6 2.6 5.7E-05 53.7 4.5 34 862-895 2-37 (473)
465 PTZ00082 L-lactate dehydrogena 76.3 3.7 8E-05 49.8 5.5 36 861-896 6-42 (321)
466 TIGR00936 ahcY adenosylhomocys 76.3 3 6.6E-05 52.1 4.8 36 859-894 193-228 (406)
467 cd01078 NAD_bind_H4MPT_DH NADP 76.3 3.5 7.7E-05 45.9 5.0 34 860-893 27-61 (194)
468 PRK01390 murD UDP-N-acetylmura 75.8 2.8 6.1E-05 53.0 4.5 33 861-893 9-41 (460)
469 PRK09078 sdhA succinate dehydr 75.6 1.2E+02 0.0025 40.2 19.3 41 1312-1353 382-429 (598)
470 KOG2304 3-hydroxyacyl-CoA dehy 75.5 2.5 5.5E-05 48.2 3.4 37 859-895 9-45 (298)
471 cd05311 NAD_bind_2_malic_enz N 74.9 3.6 7.8E-05 47.4 4.7 34 860-893 24-60 (226)
472 TIGR01505 tartro_sem_red 2-hyd 74.8 2.9 6.3E-05 49.6 4.0 32 863-894 1-32 (291)
473 TIGR01812 sdhA_frdA_Gneg succi 74.8 39 0.00085 44.1 14.6 40 1313-1353 357-403 (566)
474 TIGR00507 aroE shikimate 5-deh 74.7 3.7 8E-05 48.4 4.8 35 860-894 116-150 (270)
475 TIGR02440 FadJ fatty oxidation 74.6 2.9 6.4E-05 55.8 4.4 35 860-894 303-338 (699)
476 PRK03803 murD UDP-N-acetylmura 74.5 3.1 6.6E-05 52.5 4.3 33 862-894 7-39 (448)
477 TIGR01385 TFSII transcription 74.4 4.5 9.7E-05 48.6 5.4 57 1472-1529 26-82 (299)
478 PF00899 ThiF: ThiF family; I 74.3 3.6 7.9E-05 43.2 4.2 32 861-892 2-34 (135)
479 PLN02172 flavin-containing mon 74.3 3 6.4E-05 53.1 4.1 35 860-894 203-237 (461)
480 PRK12475 thiamine/molybdopteri 74.3 3.8 8.3E-05 50.0 4.9 34 860-893 23-57 (338)
481 PRK12810 gltD glutamate syntha 74.0 3.8 8.3E-05 52.1 5.0 40 1313-1355 428-467 (471)
482 PRK05192 tRNA uridine 5-carbox 73.9 61 0.0013 42.9 15.7 41 1112-1161 115-155 (618)
483 PF01494 FAD_binding_3: FAD bi 73.8 6.2 0.00013 46.8 6.5 38 1317-1354 291-331 (356)
484 PRK00066 ldh L-lactate dehydro 73.8 4.6 0.0001 48.9 5.4 35 860-894 5-41 (315)
485 PRK12814 putative NADPH-depend 73.8 3.7 8E-05 54.5 5.0 36 859-894 321-357 (652)
486 PRK11154 fadJ multifunctional 73.8 3.4 7.4E-05 55.3 4.7 36 859-894 307-343 (708)
487 PF02254 TrkA_N: TrkA-N domain 73.6 4.2 9.2E-05 41.0 4.4 33 864-896 1-33 (116)
488 PRK07502 cyclohexadienyl dehyd 73.5 3.8 8.3E-05 49.1 4.6 34 861-894 6-41 (307)
489 PRK00683 murD UDP-N-acetylmura 73.4 3.5 7.5E-05 51.6 4.4 33 862-894 4-36 (418)
490 cd01065 NAD_bind_Shikimate_DH 73.0 5 0.00011 42.5 4.9 35 860-894 18-53 (155)
491 PRK05476 S-adenosyl-L-homocyst 73.0 4.3 9.3E-05 51.1 5.0 35 860-894 211-245 (425)
492 PRK15116 sulfur acceptor prote 72.8 4.4 9.6E-05 48.0 4.8 34 859-892 28-62 (268)
493 PTZ00117 malate dehydrogenase; 72.7 4.5 9.7E-05 49.0 5.0 35 860-894 4-39 (319)
494 PRK11559 garR tartronate semia 72.3 4.3 9.3E-05 48.2 4.6 33 862-894 3-35 (296)
495 PRK12548 shikimate 5-dehydroge 72.2 4.8 0.0001 48.0 5.0 34 860-893 125-159 (289)
496 KOG4405 GDP dissociation inhib 72.1 3.7 8E-05 50.4 3.9 48 859-906 6-53 (547)
497 PRK09496 trkA potassium transp 72.0 3.9 8.5E-05 51.3 4.5 34 862-895 1-34 (453)
498 PRK15461 NADH-dependent gamma- 72.0 4.3 9.2E-05 48.5 4.5 33 862-894 2-34 (296)
499 COG2072 TrkA Predicted flavopr 72.0 4.5 9.7E-05 51.2 4.9 37 858-894 172-208 (443)
500 cd05293 LDH_1 A subgroup of L- 71.9 5 0.00011 48.5 5.1 35 860-894 2-38 (312)
No 1
>PLN02976 amine oxidase
Probab=100.00 E-value=1.9e-207 Score=1962.10 Aligned_cols=1348 Identities=66% Similarity=0.967 Sum_probs=1138.2
Q ss_pred hhhhhhcccCCCCceeeeccCCCCCccceeEEEecccCcccccc--ccceeccCcccccccCCcCCCCchhhhhhhhccC
Q 046008 40 GEEKKCESKKRSKPVEIGFDSDDDEPIGSLFKLKKQRNPKKAKG--QKIEAREDKVTVEDDGLVGGMDDTLASFRKKLKG 117 (1624)
Q Consensus 40 e~~~k~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (1624)
....|+++++..++|+||+|++|+|||+++|+|+++++++|+|+ .+...++++++.++++ ++||||||++|++++++
T Consensus 3 ~~~~~~~~~~~~k~i~~g~d~~ddepigs~~kl~~~~~~~k~k~~~~~~g~~~~~~~~~~~~-~~~mddtla~~~kr~~~ 81 (1713)
T PLN02976 3 DKERKSGSKRGLKVIQIGDDSDDDEPIGSLFKLKRPKNSKKVKVGLESTGKREEKLSALDED-SEGMDDTLASFRKRLKG 81 (1713)
T ss_pred cccccccccccCCceecccccccccccccceeeecccccccceecccccccccccccccccc-ccccchhHHHHHHhccC
Confidence 34578888888999999999999999999999999999999998 7779999999998888 99999999999999999
Q ss_pred CCCCCCCCcccCCCCCCCCCCCccccccccccccccccccccccCCCCCChhhhHHhhhhhhhhccccCccccccCCccc
Q 046008 118 PKKDAGSGVLNGRGSALNGSLDDDWVLDVKLAPKHDEKVGVSCEDGSGVTLDKWVETKCKERVKRSKIDSKMTIIGNHVV 197 (1624)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 197 (1624)
+|+..+++. +.. -....+.|- ..+ +.+.
T Consensus 82 ~~k~v~~~~------~~~--s~~~~~~d~-----------------~e~--~~~~------------------------- 109 (1713)
T PLN02976 82 PKKGVGSVS------ARM--SQGALLENQ-----------------EEV--DTVL------------------------- 109 (1713)
T ss_pred ccccccchh------ccc--ccccccccc-----------------chh--cccc-------------------------
Confidence 999999771 111 000001110 000 0000
Q ss_pred ccCCCCccccccccccc-hhhhhhhhhhhcCCCCcccccccccCccccccccccccCCCCCCCCCcc-cccccc------
Q 046008 198 CDDDSKCLCCRGDSLED-QKEEELSTFFQRTPSGLLRKSRTNSGSKQNIKEWSLRDGSIPSSEGDSK-SLMRSQ------ 269 (1624)
Q Consensus 198 ~~~~s~~s~~~~~~i~k-~~~~~l~~~f~~~~~~~l~~s~~~~s~~~~~~~~~l~~~~~~~~~~~~~-d~~R~~------ 269 (1624)
.+.++ .+++ .+|..++++++.+|.|+.++++++++++++++...|...+++.+..... ..+|..
T Consensus 110 -~~gs~-------~s~d~~~e~~~~~~~~~~~a~~~~~s~~~~~~~~~~r~~~~ea~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1713)
T PLN02976 110 -NEGSK-------RSLDGNLEDSLSAFLREAQAGLSRKSCANSCGKQLNRVQGLEAGLSPGSEKVKTVSNEREGNGFHQI 181 (1713)
T ss_pred -ccCcc-------cccccchHHHHHHHHHHhhcccccCccccccccccccccccccccCCCcccccchhccccccccccc
Confidence 00111 1223 5666789999999999999999999999999999999999987754321 112221
Q ss_pred ---cccc-------cccccCCCCCCCCcccccccccccccccccccCCCccccccccccCCCCCCccccCCCCccccCCC
Q 046008 270 ---SVSA-------SKLSRKDPKSDDNSNTVSNLRTLELDSDQCKKVGPMLETYHSNVQDPCSSNKVCDSDGKAHTCLPV 339 (1624)
Q Consensus 270 ---s~s~-------~~l~~~~~k~~~~~~~~s~~~~~~lk~~k~~~~~~~~~~~~e~~~~~~ss~~~~~~~~~~~~~~~~ 339 (1624)
.+.+ +--..-++++.+.++..|+.+-+..- .+++..++.||+++|+.+..|.+.-|+ ||..+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~s~~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 253 (1713)
T PLN02976 182 SYHTEEAEDGISEVAATKDRVSKSSDDRHGESSEVNHPAL------ESHSGVIEDENMVDPSIAPTQEEPLGE--PCSED 253 (1713)
T ss_pred cccccccccccccccccccccccccccccCccccccCccc------cccccccccccccCCccccccccccCC--cCccc
Confidence 0111 11122333555657776665533322 467778888999999999999888887 66666
Q ss_pred ccccccccccccccccccccccccccccccceeeccccCCCCCccccccccccccCCcccccccccccCccccccccCCC
Q 046008 340 GHASASGQKARSDTQTLDELKLSSMEKASTLILDVVEVPDPASCSKAMEEFHEFDGESDRGFTDALDLQSNSISAMNVSS 419 (1624)
Q Consensus 340 ~~~~~s~~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~~~~~~~~~t~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~s~ 419 (1624)
.++. -++++.|++++... ..+.....++|..+.++|+++
T Consensus 254 ~~~~------------~~~l~~cs~g~~~~-----------------------------~~~~~~~~~~~~~v~~kc~~~ 292 (1713)
T PLN02976 254 RICD------------KKGLVLCSCGKQPT-----------------------------FEIKSALSQQSKGVSTKCISS 292 (1713)
T ss_pred cccc------------cccccccccCCCCC-----------------------------ccccchhhccccccccchhcc
Confidence 6544 24778999877652 222344557788888999999
Q ss_pred CCCCCCCCCCCccccCCCCCchhhhhcccccccccccccccchhccccccccccCCCccccccccccCCCCCC-CCC-CC
Q 046008 420 PDPEISSSSTGKEVSLPCAEDELASKSCKTASKQIHVSASEKILQATSKLLTQKSLGAEKSESWFNFDQCPAD-SSN-KE 497 (1624)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~K~~~~~~s~~~s~~~s~~~~~kss~~~~~~s~~~~~~~~~~-~~~-s~ 497 (1624)
..++++.++..+.+++. .+|++.-.|-|++--.+ ... ..
T Consensus 293 ~~~~~~~~~~~k~~~~~---------------------------------------~~~~~~~~~~~~~n~~~~~~~~~~ 333 (1713)
T PLN02976 293 AEQQASVSSDNKETSST---------------------------------------EVHKANFTMQMNHNGGSLEVNTLE 333 (1713)
T ss_pred ccccccccccccccccc---------------------------------------chhcccceeeeccCCCCccccCCC
Confidence 99998887666554421 11222111111111111 000 00
Q ss_pred CC----CCCCccccCCCCCCCCCCCCCCCCccCcCCCCCccccccchhHHHHHhhhhhhhccCCCcccCCcchhHHhhhc
Q 046008 498 NA----IPSDDEYANGGSPSSVAPDENGSFTEDTLSMPDYENRDTKLSAVQRAVRNAKKRRLGDMAYEGDADWEVLINEQ 573 (1624)
Q Consensus 498 ~s----~~sk~~~~~~~s~~S~~~~~~~~~~~d~~s~s~~~~~~~~~s~~~rk~rk~k~r~~~d~~~e~d~~~e~~~~~~ 573 (1624)
++ .+-.+..-+|.|+.|++|++|..+.+|+.+.+++++..++.++.+|..|++|||+||||+||||+|||+||++|
T Consensus 334 ~~~~~~~~~~~~~~~ga~~~s~~p~~~e~~~~davs~pd~e~~~~~~s~~~R~~r~~kk~~~~d~~~egd~~w~~l~~~~ 413 (1713)
T PLN02976 334 DSPSHDIVGSHPVCNGASPVSITPEENESYVEDAVSLPDSEIKDGKLSKLQRVTRKAKKRKLGDMAYEGDADWETLINEQ 413 (1713)
T ss_pred cCccccccccCccccccCcccCCCccccccccccccCCCchhhcccchhhcccccccccccccccccccCccHHHHhccc
Confidence 00 01122356889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccchhhhhccccccCCCCCccccccccccccceeccCcccccCchhhcchhHHHhcCCCccchhhhhhHHHHhh
Q 046008 574 GFLENHQVMDYEQALRTRDKFDSSSTTLTEAENTGAAAVAVGLKARAAGPIERIKFKEILKRRGGLQEYLECRNQILSLW 653 (1624)
Q Consensus 574 ~~~~~~~~~~~d~~~~~r~k~d~~~~~~~~~~~~~~aa~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~l~~rn~~l~~w 653 (1624)
+||.++++.+.|+++++|+|+|+++ .+++++++++|||++||||+++||+|+|||+|||||+|||||||+|||+||+||
T Consensus 414 ~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~aav~~gl~a~~~~~~e~~~~k~~lkr~~~~q~yl~cr~~~l~~w 492 (1713)
T PLN02976 414 GFLENPSACDSDRSFKTRDKSDSSS-VSKEGENGGAAAVSAGLKARAVGPIEKIKFKEVLKRKGGLQEYLECRNMILGLW 492 (1713)
T ss_pred ccccccccccccccccccccccccc-ccccccCccHhhhhccccccccChHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 9999999999999999999999999 567899999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCcccccCCCCCCCCCCCChhhHHHHHHHhhcccCceeeecCCCCcccCCCCcchhhHHhhhhhccccCCcccc
Q 046008 654 SGDVGRILPLTECGVSDTPLGDEPSRASLIREIYKFLDQSGYINVGIASTKEKADHNAKHSYKLLKEERLEKSSGASIAD 733 (1624)
Q Consensus 654 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~g~in~g~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1624)
.||++++||+++|++.++|+.+|+|+++|||+||.||||+||||.||++.|+++++.++|+|+++++++|||++++++||
T Consensus 493 ~k~~~~~l~~~~c~v~~~~~~~e~~~~~l~r~~~~fld~~gyin~g~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (1713)
T PLN02976 493 SKDVSRILPLADCGVTDTPSEDESPRASLIREVYLFLDQRGYINAGIASEKEKAEPSTNHNYKLVEEKTLEESSGASVAD 572 (1713)
T ss_pred hhhhhhcccHhhccccCCcccccCchhhHHHHHHHHhhccCceecccccccccCCCCCCcchhhhhccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeecccccccccccccCccccCCCCcccccccCCCCCCCCCchhhhhhhhhhhhccccCCCccccccccccccc
Q 046008 734 SEDGVAFILGQIKSSETTTEAKHGVECNDGNQQIGIKTGGSMTPELPNEIRQKESVVDDCQQRVDSDPKASNRLVGVDVS 813 (1624)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~ 813 (1624)
+||||+||+||++..+++.|+++|+..++.++... ++.+...|.++.+..+++.........|.....|+.
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (1713)
T PLN02976 573 SEDGVSFILGQVKSSESSTEGKDCVLVDDENDASG---------DLPNVCECSELLASDIQQCGASNEKLNNGLVSLDAL 643 (1713)
T ss_pred cccchhhhhhcccccccccccccccccccchhhhc---------cccccccHhhhcccchhhcchhhhhhhccccchhhh
Confidence 99999999999999999999999999988876655 456667788888888888777777788888888888
Q ss_pred cCCCCccccccCCC-cC-ChhcccccchhhhhhhhhcCCCCccccCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 046008 814 CDDPSCGMVDGGTV-PL-TIEERSESERVQSASCDDAGENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891 (1624)
Q Consensus 814 ~~~~~c~~v~~~r~-~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE 891 (1624)
...+.|.+....+. .+ .|+..+.+.-..++.|++++..+..+.+....++|+|||||++||+||++|+++|++|+|||
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlE 723 (1713)
T PLN02976 644 SASPSSSVLDSPETLSVIKPELRNELQSVQSNSCIEMGGNHCVLCDSVDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLE 723 (1713)
T ss_pred ccCCccccccCcccccccchhhhcccccchhhhHHhcCCCCCccCCcCCCCcEEEECchHHHHHHHHHHHHCCCcEEEEe
Confidence 77788887777644 34 99999999999999999999888888888888999999999999999999999999999999
Q ss_pred ccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHHHhCCceeeecCCCCeeeccCCcccCcchHHHH
Q 046008 892 ARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEAL 971 (1624)
Q Consensus 892 ~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~LlkeLGLel~~l~~~~~~yd~~~Gk~vp~~l~~~l 971 (1624)
+++++||++++.....|+++|+|++|+++...+....+.++|+..|+.++|+.+..+...++.|+..+|..++......+
T Consensus 724 a~~~vGGri~t~~~~~g~pvDlGas~i~G~~~nv~~~r~~np~~~la~qlGl~l~~~~~~~~~yd~~~G~~V~~e~~~~v 803 (1713)
T PLN02976 724 ARSRIGGRVYTDRSSLSVPVDLGASIITGVEADVATERRPDPSSLICAQLGLELTVLNSDCPLYDVVTGEKVPADLDEAL 803 (1713)
T ss_pred eccCCCCceeeccccCCceeccCcEEEecccccccccccccHHHHHHHhcCCccccccCCCceeEccCCcCCCHHHHHHH
Confidence 99999999999876568999999999999887777777789999999999999887777788898889999999988888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHhhccCCcccccccchhh-Hhhc-ccCCCCCCCCcccchhc
Q 046008 972 EAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMARLGRGREDASMHNSMD-VYSK-TSSVDSRVPDKDCSRED 1049 (1624)
Q Consensus 972 ~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~r~~~~~~~~~~~~~~~a~d-~fs~-~~~i~~~~p~~d~l~e~ 1049 (1624)
...|+.+++.+.....+.+.....+++.++|++.+...........++......+.+ .+.. ...+.....++ .....
T Consensus 804 ~~~fn~lld~~~~~~~~~g~~a~d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er-~s~~~ 882 (1713)
T PLN02976 804 EAEYNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEK-ESKED 882 (1713)
T ss_pred HHHHHHHHHHHHHHHhhcccCccCCCHHHHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhh-hhHHH
Confidence 899999988876655554445557889999987664432211111111111111111 1110 01122222222 34567
Q ss_pred cCCHHHHHHHHHHHHhhhhhcccccccccccccccccccCCCCCccccccchHHHHHHHHhhhccccccceEEEEEecCC
Q 046008 1050 ILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGFGGAHCMIKGGYSTVVEALGKELLIHHNHVVTDISYSFK 1129 (1624)
Q Consensus 1050 ~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~~~~y~g~~G~~~~VkGGm~sLveALAe~L~IrLNt~VtrI~~~~~ 1129 (1624)
++++..+++|+|++..++++++..+..+|+.+|.++..|..++|.++++.|||++|+++|++.+.|+||++|++|.+...
T Consensus 883 ~Ls~~er~lL~w~~~~lE~~~aa~L~eVSl~~~~qd~~y~~fgG~~~rIkGGYqqLIeALAe~L~IrLNtpVtrId~s~~ 962 (1713)
T PLN02976 883 VLSPLERRVMNWHFAHLEYGCAALLKEVSLPYWNQDDVYGGFGGAHCMIKGGYSNVVESLAEGLDIHLNHVVTDVSYGSK 962 (1713)
T ss_pred hhCHHHHHHHHHHHHhhcccccCCHHHhhhhhhhcccccccCCCceEEeCCCHHHHHHHHHhhCCeecCCeEEEEEecCC
Confidence 88999999999999999899999999999999998878888889999999999999999999999999999999998411
Q ss_pred CCCCC-CCCCcEEEEeCCCcEEEcCEEEEccChhhhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCc
Q 046008 1130 DSDLS-DGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVD 1208 (1624)
Q Consensus 1130 ~~~~s-~~~~~V~V~TadGeti~AD~VIsAiP~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~ 1208 (1624)
+.+.. ..+++|.|+|.+|++|.||+||+|+|+++|+...|.|.|+||.+++++|++++||.++||+|.|+++||+....
T Consensus 963 d~~~~~s~~dGVtVtTsDGetftADaVIVTVPLGVLKag~I~FsPPLPe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d 1042 (1713)
T PLN02976 963 DAGASGSSRKKVKVSTSNGSEFLGDAVLITVPLGCLKAETIKFSPPLPDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVD 1042 (1713)
T ss_pred cccccccCCCcEEEEECCCCEEEeceEEEeCCHHHhhhcccccCCcccHHHHHHHHhhccccceEEEEEeCCccccCCCC
Confidence 10000 12467999999999999999999999999987779999999999999999999999999999999999998888
Q ss_pred cccccccccCCCCceeEEeccccCCCCcEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCC
Q 046008 1209 YFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGR 1288 (1624)
Q Consensus 1209 ~fG~~~~~~~~rg~~~~~~n~~ap~G~~vLvayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~ 1288 (1624)
+||........++.+|++|+...+.+.++|++|++|..+..+..++++++++.++..|+++||...+|+|..+++++|..
T Consensus 1043 ~FG~s~edtdlrG~~~~~wnlr~psG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWss 1122 (1713)
T PLN02976 1043 YFGATAEETDLRGQCFMFWNVKKTVGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGR 1122 (1713)
T ss_pred ccccccccCCCCceEEEeccCCCCCCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCC
Confidence 89877655556778889998877778889999999999999999999999999999999999977678999999999999
Q ss_pred CCCCcccccccCCCCCCchhhhhCCccCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHccCCCCchhHHHHHHh
Q 046008 1289 DPFSYGAYSYVATGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTTGNDFTAEVEAMEAA 1368 (1624)
Q Consensus 1289 dp~s~GsYs~~~pG~~~~~~d~L~tPV~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~~~~~~~~~~~~l~~~ 1368 (1624)
+||++|+|+|++||+.+.+++.+++|++++||||||+|+..|+|||+||+.||+|||.+|+..|+.|.++..++++|+++
T Consensus 1123 DPySrGSYSy~~PGs~~~d~d~LAePVggRLFFAGEATS~~~pGTVHGAIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~ 1202 (1713)
T PLN02976 1123 DPFSYGAYSYVAIGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMMSGLREAVRIIDILNTGNDYTAEVEALETA 1202 (1713)
T ss_pred CCCcCccccCCCCCCCchHHHHHhCCCCCcEEEEehhhhCCCcchHHHHHHHHHHHHHHHHHHHHccCccccHHHHHHHh
Confidence 99999999999999998899999999998999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcchhhhhhhhHhHhhhhhhhhcccchhhhhHhHHHHHHHHHhhccccchhHHHHHHhcCCChhhccccccccc
Q 046008 1369 QMQSESEGDEVRDITRRLEAVELSNVLYKNSLDRALILTRESLLQDMFFNAKTTAGRLHLAKELLNLPVATLKSFAGTRE 1448 (1624)
Q Consensus 1369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 1448 (1624)
|+++++||+||+|+++|++++|++++||+++++++++++||+||++||++++||+||||||++|++||+++||+|||+||
T Consensus 1203 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gr~~~~~~~~~~~~~~~~~~a~~~~ 1282 (1713)
T PLN02976 1203 QRHSESERDEVRDITKRLEAVELSNVLYKNSLDADPILTREALLQEMFFSAKTTAGRLHLAKELLNLPVETLKSFAGTKE 1282 (1713)
T ss_pred hhhhhhhHHHHHHHHHhhcccccchhhhhcccccccchhHHHHHHHHHHhhcccccHHHHHHHHHhCCHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhccCCchhHHHHHHHHhhhhhcchhhHHHhccccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhh
Q 046008 1449 GLTTLNSWILDSMGKDGTQLLRHCVRLLVRVSTDLLAVRLSGIGKTVREKVCVHTSRDIRAIASQLVSVWLEVFRKEKAS 1528 (1624)
Q Consensus 1449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1528 (1624)
||++||+||||||||||||||||||||||+|+|||+|||+||||||||||||+||+||||+|||||||+|+|+|||+||+
T Consensus 1283 gl~~l~~w~~~~~~~~~~~l~~~~~~ll~~~~~d~~a~r~sg~~~~~k~~~~~h~~~~~r~~a~~~~~~w~~~~~~~~~~ 1362 (1713)
T PLN02976 1283 GLATLNSWILDSMGKDGTQLLRHCVRLLVLVSTDLLAVRLSGIGKTVKEKVCVHTSRDIRAIASQLVSVWLEVFRREKAS 1362 (1713)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhhcchhHHHHHhccchHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred h-hhhhhccccccccccccc
Q 046008 1529 S-RLKLLKQSTAVDSIKRKS 1547 (1624)
Q Consensus 1529 ~-~~~~~~~~~~~~~~~~~~ 1547 (1624)
| |+||+|++++.+++|+.-
T Consensus 1363 ~~~~~~~~~~~~~~~~~~~~ 1382 (1713)
T PLN02976 1363 NGGLKLLRQATANESSKRRK 1382 (1713)
T ss_pred ccchhhhhhccccccccccc
Confidence 8 999999999999999843
No 2
>PLN03000 amine oxidase
Probab=100.00 E-value=9.7e-69 Score=680.03 Aligned_cols=543 Identities=41% Similarity=0.693 Sum_probs=441.1
Q ss_pred ccccccccccceeccCcccccCchhhcc--hhHHHhcCCCccchhhhhhHHHHhhcCCCccCCcccccCCCCCCCCCCCC
Q 046008 601 LTEAENTGAAAVAVGLKARAAGPIERIK--FKEILKRRGGLQEYLECRNQILSLWSGDVGRILPLTECGVSDTPLGDEPS 678 (1624)
Q Consensus 601 ~~~~~~~~~aa~~~~l~~~~~~~~e~~~--~~~~~~~~~~~~~~l~~rn~~l~~w~~~~~~~l~~~~~~~~~~~~~~~~~ 678 (1624)
.++.+..+-.|+++|||+++||++|..| || |+.+. .+..||+|||.||+||.+||...|+.+.|.....+ +
T Consensus 76 ~~~~~~~~~~a~~~~~p~d~l~~~e~~~~~~~-~~~~~-~~~~yl~iRN~il~lW~~np~~~~t~~~a~~~~~~-----~ 148 (881)
T PLN03000 76 NKEATTEALLALTAGFPADSLTEEEIEFGVVP-IVGGI-EQVNYILIRNHIISKWRENISSWVTKEMFLGSIPK-----H 148 (881)
T ss_pred hccccHHHHHHHHcCCCcccCCHHHHhccccC-ccccc-chhhHHHHHHHHHHHHHHCCceeecHHHHhhhcch-----h
Confidence 4566777889999999999999999887 78 66663 45699999999999999999999999988844322 4
Q ss_pred hhhHHHHHHHhhcccCceeeecCCCCcccCCCCcchhhHHhhhhhccccCCcccccccceeeeecccccccccccccCcc
Q 046008 679 RASLIREIYKFLDQSGYINVGIASTKEKADHNAKHSYKLLKEERLEKSSGASIADSEDGVAFILGQIKSSETTTEAKHGV 758 (1624)
Q Consensus 679 ~~~l~~~~~~~l~~~g~in~g~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 758 (1624)
...|++.+|.||.||||||||++..
T Consensus 149 ~~~l~~~~~~~L~r~G~in~g~~~~------------------------------------------------------- 173 (881)
T PLN03000 149 CSSLLDSAYNYLVTHGYINFGIAQA------------------------------------------------------- 173 (881)
T ss_pred HHHHHHHHHHHHHHcCcccHHHHHH-------------------------------------------------------
Confidence 5579999999999999999999820
Q ss_pred ccCCCCcccccccCCCCCCCCCchhhhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcCChhcccccc
Q 046008 759 ECNDGNQQIGIKTGGSMTPELPNEIRQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPLTIEERSESE 838 (1624)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l~p~~~~~~~ 838 (1624)
+++.. |
T Consensus 174 ----------------------------------~~~~~--~-------------------------------------- 179 (881)
T PLN03000 174 ----------------------------------IKDKF--P-------------------------------------- 179 (881)
T ss_pred ----------------------------------HHhhc--c--------------------------------------
Confidence 00000 0
Q ss_pred hhhhhhhhhcCCCCccccCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccC---CCccccccc
Q 046008 839 RVQSASCDDAGENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTS---LSVPVDLGA 915 (1624)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~---~g~~~d~Ga 915 (1624)
.....++|+|||||++||+||++|++.|++|+|||+++++|||++|.... .++.+|+|+
T Consensus 180 ------------------~~~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGa 241 (881)
T PLN03000 180 ------------------AQSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGG 241 (881)
T ss_pred ------------------ccCCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCC
Confidence 00124789999999999999999999999999999999999999998853 257899999
Q ss_pred eeecccccchhhhccCCcHHHHHHHhCCceeeecCCCCeeeccCCcccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046008 916 SIITGVEADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMK 995 (1624)
Q Consensus 916 ~~I~g~~~~v~~~~~~nPl~~LlkeLGLel~~l~~~~~~yd~~~Gk~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~ 995 (1624)
+|+++... +|+..|+++||++++.+...+++|.. +|..++......+...++.+++.+..+..........
T Consensus 242 s~i~g~~~--------npl~~L~~qlgl~l~~~~~~~~ly~~-~Gk~v~~~~~~~ve~~fn~lLd~~~~lr~l~~~~~~D 312 (881)
T PLN03000 242 SVLTGTLG--------NPLGIIARQLGSSLYKVRDKCPLYRV-DGKPVDPDVDLKVEVAFNQLLDKASKLRQLMGDVSMD 312 (881)
T ss_pred eEEeCCCc--------cHHHHHHHHcCCceeecCCCCeEEEe-CCcCCchhhhhhHHHHHHHHHHHHHHHHHHhcccCcC
Confidence 99998753 67888999999998877667777764 7887765555444444555554432211111111112
Q ss_pred ccHHHHHHHHHHHHHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccc
Q 046008 996 MSLEDGLEYALKRRRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLK 1075 (1624)
Q Consensus 996 ~sled~Le~~lk~~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~ 1075 (1624)
.++.++++ .|.... ...+.+..+.+++|+++.+++.++..+.
T Consensus 313 ~SLg~aLe-------------------------~~~~~~-------------g~~~t~e~~~Ll~w~lanLE~~~as~ls 354 (881)
T PLN03000 313 VSLGAALE-------------------------TFRQVS-------------GNDVATEEMGLFNWHLANLEYANAGLVS 354 (881)
T ss_pred CcHHHHHH-------------------------HHHHHH-------------cccCCHHHHHHHHHHHHHHhcccccCHH
Confidence 22222221 111110 0113445677889999999999888888
Q ss_pred cccccccccccccCCCCCccccccchHHHHHHHHhhhccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEE
Q 046008 1076 EVSLPFWNQDDVYGGFGGAHCMIKGGYSTVVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAV 1155 (1624)
Q Consensus 1076 ~vSl~~~~~~~~y~g~~G~~~~VkGGm~sLveALAe~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~V 1155 (1624)
.+++.+|.++..| .++|.+++++|||++|+++|++.|+|++|++|++|.+ .+++|.|++.+ .+|.||+|
T Consensus 355 ~LSl~~wdqd~~~-e~~G~~~~v~GG~~~LieaLa~~L~I~Ln~~Vt~I~~---------~~dgV~V~~~~-~~~~AD~V 423 (881)
T PLN03000 355 KLSLAFWDQDDPY-DMGGDHCFLPGGNGRLVQALAENVPILYEKTVQTIRY---------GSNGVKVIAGN-QVYEGDMV 423 (881)
T ss_pred HHHHHHhhhcccc-cCCCceEEeCCCHHHHHHHHHhhCCcccCCcEEEEEE---------CCCeEEEEECC-cEEEeceE
Confidence 8888888765444 2567789999999999999999999999999999999 45678898754 58999999
Q ss_pred EEccChhhhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEeccccCCCC
Q 046008 1156 LITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGA 1235 (1624)
Q Consensus 1156 IsAiP~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n~~ap~G~ 1235 (1624)
|+|+|+++|+...|.|.|+||++++++|++++||.++||+|.|+++||+.+..+||........++.++.+|+.....|.
T Consensus 424 IvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~~FG~l~~~~~~rg~~~~f~s~sp~~G~ 503 (881)
T PLN03000 424 LCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLDTFGHLTEDPNYRGEFFLFYSYAPVAGG 503 (881)
T ss_pred EEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceeEEecCCCCCceeEEEeCCCCCCCC
Confidence 99999999998789999999999999999999999999999999999998888898876554556677777776655678
Q ss_pred cEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHhCC--CCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhhhCC
Q 046008 1236 PVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGA--ASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILGR 1313 (1624)
Q Consensus 1236 ~vLvayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~--~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~t 1313 (1624)
++|++|+.|+.+..++.++++++++.++++|+++||. ..+++|+.+++++|..+||++|+|+++++|+...+++.+++
T Consensus 504 pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~DPysrGSYS~~~pG~~~~~~d~Lae 583 (881)
T PLN03000 504 PLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGGDPFSLGSYSNVAVGASGDDYDILAE 583 (881)
T ss_pred cEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCCCCCCCccccCCCCCCchHHHHHHhC
Confidence 8999999999999999999999999999999999984 34688999999999999999999999999999999999999
Q ss_pred ccC-CeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHccC
Q 046008 1314 PVE-NCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTTG 1355 (1624)
Q Consensus 1314 PV~-grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~~~ 1355 (1624)
|++ ||||||||||+..|+||||||+.||+|||.+|+..++..
T Consensus 584 Pv~~GRIfFAGEaTs~~~~GTVhGAieSGlRAA~eIl~~l~~~ 626 (881)
T PLN03000 584 SVGDGRLFFAGEATTRRYPATMHGAFVTGLREAANMAQSAKAR 626 (881)
T ss_pred cCCCCcEEEeehHHhCCCCeeHHHHHHHHHHHHHHHHHHhhhc
Confidence 984 679999999999999999999999999999999999853
No 3
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=100.00 E-value=4.3e-67 Score=666.68 Aligned_cols=607 Identities=39% Similarity=0.649 Sum_probs=467.8
Q ss_pred cccccccccceeccCcccccCchhhcc-hhHHHhcCCCccchhhhhhHHHHhhcCCCccCCcccccCCCCCCCCCCCChh
Q 046008 602 TEAENTGAAAVAVGLKARAAGPIERIK-FKEILKRRGGLQEYLECRNQILSLWSGDVGRILPLTECGVSDTPLGDEPSRA 680 (1624)
Q Consensus 602 ~~~~~~~~aa~~~~l~~~~~~~~e~~~-~~~~~~~~~~~~~~l~~rn~~l~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~ 680 (1624)
++.+..+--|+++|||+++|+++|-.+ |++++.+ ..+..||+|||.||+||..||...|+.+.|.....+ +..
T Consensus 128 ~~~~~~~~~a~~~~~p~~~l~~~e~~~~~~~~~~~-~~~~~yl~iRN~il~lW~~np~~~~t~~~a~~~~~~-----~~~ 201 (808)
T PLN02328 128 KEVDVEALIAISVGFPVDSLTEEEIEANVVSTIGG-TEQANYIVVRNHILARWRSNVSNWLTRDHALESIRA-----EHK 201 (808)
T ss_pred ccchHHHHHHHHcCCCCccCCHHHHhhcCcchhcc-cceeehhhHHHHHHHHHHhCCcceecHHHHHhhcch-----hhH
Confidence 455566778999999999999999888 9999998 666699999999999999999999999888754433 345
Q ss_pred hHHHHHHHhhcccCceeeecCCCCcccCCCCcchhhHHhhhhhccccCCcccccccceeeeecccccccccccccCcccc
Q 046008 681 SLIREIYKFLDQSGYINVGIASTKEKADHNAKHSYKLLKEERLEKSSGASIADSEDGVAFILGQIKSSETTTEAKHGVEC 760 (1624)
Q Consensus 681 ~l~~~~~~~l~~~g~in~g~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (1624)
.|++.+|.||.++|||||||...- . +.
T Consensus 202 ~l~~~~~~~l~~~g~in~gv~~~~--------------~-----~~---------------------------------- 228 (808)
T PLN02328 202 NLVDSAYNFLLEHGYINFGVAPVI--------------K-----EA---------------------------------- 228 (808)
T ss_pred HHHHHHHHHHhccCceeeeccccc--------------c-----cc----------------------------------
Confidence 799999999999999999998400 0 00
Q ss_pred CCCCcccccccCCCCCCCCCchhhhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcCChhcccccchh
Q 046008 761 NDGNQQIGIKTGGSMTPELPNEIRQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPLTIEERSESERV 840 (1624)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l~p~~~~~~~~~ 840 (1624)
. .
T Consensus 229 -------------------------------~----~------------------------------------------- 230 (808)
T PLN02328 229 -------------------------------Q----L------------------------------------------- 230 (808)
T ss_pred -------------------------------c----c-------------------------------------------
Confidence 0 0
Q ss_pred hhhhhhhcCCCCccccCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCC-C--cccccccee
Q 046008 841 QSASCDDAGENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSL-S--VPVDLGASI 917 (1624)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~-g--~~~d~Ga~~ 917 (1624)
...+....++|+|||||++||+||++|+++|++|+|||+++++||++++..... + +.+|+|++|
T Consensus 231 -------------~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~ 297 (808)
T PLN02328 231 -------------RSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSV 297 (808)
T ss_pred -------------CCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCcee
Confidence 000112457899999999999999999999999999999999999999988642 2 368999999
Q ss_pred ecccccchhhhccCCcHHHHHHHhCCceeeecCCCCeeeccCCcccCcchHHHHHHHHHHHHHHHHHHHHHhhh--hhhh
Q 046008 918 ITGVEADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAEFNSLLDDMVLLVAQKGE--HAMK 995 (1624)
Q Consensus 918 I~g~~~~v~~~~~~nPl~~LlkeLGLel~~l~~~~~~yd~~~Gk~vp~~l~~~l~~~~~slld~l~~~~~~~g~--~a~~ 995 (1624)
+++... +|+..++++||++...+...+++|. .+|..++..+...+...++.+++.+..+...... ....
T Consensus 298 i~g~~~--------npl~~l~~~lgl~~~~~~~~~~~~~-~dG~~~~~~~~~~v~~~f~~lL~~~~klr~~~~~~~~~~D 368 (808)
T PLN02328 298 LTGING--------NPLGVLARQLGLPLHKVRDICPLYL-PDGKAVDAEIDSKIEASFNKLLDRVCKLRQAMIEEVKSVD 368 (808)
T ss_pred ecCCCc--------cHHHHHHHHcCCceEecCCCceEEe-CCCcCcchhhhhhHHHHHHHHHHHHHHHHHhhhhcccccC
Confidence 998743 6777899999999887766666665 4777665555544444455555443221110000 0011
Q ss_pred ccHHHHHHHHHHHHHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccc
Q 046008 996 MSLEDGLEYALKRRRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLK 1075 (1624)
Q Consensus 996 ~sled~Le~~lk~~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~ 1075 (1624)
.++.++++. |... .....++..+.+++|+++++++.++..+.
T Consensus 369 ~SLg~~le~-------------------------~~~~-------------~~~~~~~~e~~Ll~w~lanlE~~~gs~ls 410 (808)
T PLN02328 369 VNLGTALEA-------------------------FRHV-------------YKVAEDPQERMLLNWHLANLEYANASLMS 410 (808)
T ss_pred cCHHHHHHH-------------------------Hhhh-------------hccCCCHHHHHHHHHHHHHHhccchhhHH
Confidence 222222211 1000 01225678889999999999999999999
Q ss_pred cccccccccccccCCCCCccccccchHHHHHHHHhhhccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEE
Q 046008 1076 EVSLPFWNQDDVYGGFGGAHCMIKGGYSTVVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAV 1155 (1624)
Q Consensus 1076 ~vSl~~~~~~~~y~g~~G~~~~VkGGm~sLveALAe~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~V 1155 (1624)
.+++..|.+...+ .++|.++++.|||++|+++|++.++|++|++|++|.+ .+++|.| +.+|+++.||+|
T Consensus 411 ~LSl~~w~qd~~~-e~~G~~~~v~GG~~~Li~aLa~~L~I~ln~~V~~I~~---------~~dgV~V-~~~G~~~~AD~V 479 (808)
T PLN02328 411 NLSMAYWDQDDPY-EMGGDHCFIPGGNDTFVRELAKDLPIFYERTVESIRY---------GVDGVIV-YAGGQEFHGDMV 479 (808)
T ss_pred HHHhhhhhccccc-cCCCeEEEECCcHHHHHHHHHhhCCcccCCeeEEEEE---------cCCeEEE-EeCCeEEEcCEE
Confidence 9998888765443 3567889999999999999999999999999999999 3556877 457889999999
Q ss_pred EEccChhhhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEeccccCCCC
Q 046008 1156 LITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGA 1235 (1624)
Q Consensus 1156 IsAiP~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n~~ap~G~ 1235 (1624)
|+|+|+++|+...|.|.|+||+++.++|++++|++++||+|.|+.+||+.....||+...+...++.++.+++.....|.
T Consensus 480 IvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d~fG~l~~d~s~rG~~~lf~s~s~~~G~ 559 (808)
T PLN02328 480 LCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEIDTFGHLTEDPSMRGEFFLFYSYSSVSGG 559 (808)
T ss_pred EECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCCceEEEeecCCCCceEEEEecCCCCCCC
Confidence 99999999987789999999999999999999999999999999999998778888876655567777778877666677
Q ss_pred cEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHhCC--CCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhhhCC
Q 046008 1236 PVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGA--ASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILGR 1313 (1624)
Q Consensus 1236 ~vLvayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~--~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~t 1313 (1624)
++|++|+.|..+..+..++++++++.++++|+++||. ..+++|..+++++|..+||++|+|+++.+|+...+++.+++
T Consensus 560 ~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vtrW~~DP~s~GSYS~~~pG~~~~~~~~Lae 639 (808)
T PLN02328 560 PLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAVCTRWGKDCFTYGSYSYVAVGSSGDDYDILAE 639 (808)
T ss_pred cEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEEEecCCCCCCcCCCCCCCCCCCchhHHHHHhc
Confidence 8999999999999999999999999999999999985 34678999999999999999999999999998888999999
Q ss_pred ccC-CeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHccCCCCchhHHHHHHhhhcCCCCcchhhhhhhhHhHhhhh
Q 046008 1314 PVE-NCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTTGNDFTAEVEAMEAAQMQSESEGDEVRDITRRLEAVELS 1392 (1624)
Q Consensus 1314 PV~-grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1392 (1624)
|+. ||||||||||+..|+||||||+.||+|||.+|+..++........ +..+..+ ....+...+..++|.
T Consensus 640 Pv~~GRL~FAGEaTs~~~~GtVhGAi~SGlRAA~eIl~~~~~~~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~~ 710 (808)
T PLN02328 640 SVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVARRRSLCIDD-------KVNNDEE--EDDCLDQLFDTPDLT 710 (808)
T ss_pred cCCCCCEEEEEhhHhCCCCeEhHHHHHHHHHHHHHHHHHHhhcccCCcc-------cccccch--hhhHHHHHhcCcCcc
Confidence 973 679999999999999999999999999999999999865332200 0011111 112244444444443
Q ss_pred ----hhhhccc-chhhhhHhHHHHHHHHHhhccccchhHHHH
Q 046008 1393 ----NVLYKNS-LDRALILTRESLLQDMFFNAKTTAGRLHLA 1429 (1624)
Q Consensus 1393 ----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 1429 (1624)
.++|... .|+ ..-++||.-|..-+..+|-|+||
T Consensus 711 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 748 (808)
T PLN02328 711 FGSFSILFDPRSNDP----ESLSLLRVKFQGEKPDSCFLCLY 748 (808)
T ss_pred ccceEEEecCCCCCC----CCceeEEEEeccCCCCcccEEEE
Confidence 4455422 232 45567777676666655555554
No 4
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=1.6e-63 Score=632.18 Aligned_cols=606 Identities=38% Similarity=0.622 Sum_probs=464.3
Q ss_pred cccccccceeccCcccccCchhh-cchhHHHhcCCCccchhhhhhHHHHhhcCCCccCCcccccCCCCCCCCCCCChhhH
Q 046008 604 AENTGAAAVAVGLKARAAGPIER-IKFKEILKRRGGLQEYLECRNQILSLWSGDVGRILPLTECGVSDTPLGDEPSRASL 682 (1624)
Q Consensus 604 ~~~~~~aa~~~~l~~~~~~~~e~-~~~~~~~~~~~~~~~~l~~rn~~l~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 682 (1624)
.+....-|+++|+|.++++.+|. .-|=..+- ...+..||+|||.||.||..||...|+.+.+...-.. .-..+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~yl~irn~il~~w~~np~~~~~~~~a~~~~~~-----~i~~c 128 (738)
T PLN02529 55 TETEAMIALSVGFPIDALLEEEIRAGVVRELG-GKEQNDYIVVRNHILARWRSNVGIWLSKGQIKETVSS-----EYEHL 128 (738)
T ss_pred cHHHHHHHHHcCCCccccCHHHHhccccCccc-cccceeeehHHHHHHHHHHHCCceeecHHHHhhhchh-----hHHHH
Confidence 34455678999999999998875 22322221 2334589999999999999999999999776643211 34568
Q ss_pred HHHHHHhhcccCceeeecCCCCcccCCCCcchhhHHhhhhhccccCCcccccccceeeeecccccccccccccCccccCC
Q 046008 683 IREIYKFLDQSGYINVGIASTKEKADHNAKHSYKLLKEERLEKSSGASIADSEDGVAFILGQIKSSETTTEAKHGVECND 762 (1624)
Q Consensus 683 ~~~~~~~l~~~g~in~g~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1624)
|...|.||.++||||||+-..-.
T Consensus 129 i~~c~~~l~~~~~inc~vnp~~~--------------------------------------------------------- 151 (738)
T PLN02529 129 ISAAYDFLLYNGYINFGVSPSFA--------------------------------------------------------- 151 (738)
T ss_pred HHHHHHHHHhCCCcceeeccccc---------------------------------------------------------
Confidence 88999999999999999863000
Q ss_pred CCcccccccCCCCCCCCCchhhhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcCChhcccccchhhh
Q 046008 763 GNQQIGIKTGGSMTPELPNEIRQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPLTIEERSESERVQS 842 (1624)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l~p~~~~~~~~~~~ 842 (1624)
. .+|
T Consensus 152 -----------------------~-----------~~~------------------------------------------ 155 (738)
T PLN02529 152 -----------------------S-----------PIP------------------------------------------ 155 (738)
T ss_pred -----------------------C-----------CCC------------------------------------------
Confidence 0 000
Q ss_pred hhhhhcCCCCccccCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCC-C--ccccccceeec
Q 046008 843 ASCDDAGENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSL-S--VPVDLGASIIT 919 (1624)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~-g--~~~d~Ga~~I~ 919 (1624)
+....++|+|||||++||+||+.|+++|++|+|||+++++||+++|...+. | +++|+|++|++
T Consensus 156 --------------~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~ 221 (738)
T PLN02529 156 --------------EEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVIT 221 (738)
T ss_pred --------------cccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeecc
Confidence 012347799999999999999999999999999999999999999988641 2 48999999999
Q ss_pred ccccchhhhccCCcHHHHHHHhCCceeeecCCCCeeeccCCcccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHH
Q 046008 920 GVEADVATERRADPSSLVCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLE 999 (1624)
Q Consensus 920 g~~~~v~~~~~~nPl~~LlkeLGLel~~l~~~~~~yd~~~Gk~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sle 999 (1624)
+... +|+..+.+++|+++......+++|. .+|..++...+..+...|+.+++.+..+.......+...++.
T Consensus 222 g~~~--------npl~~la~~lgl~~~~~~~~~~~~~-~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~Sl~ 292 (738)
T PLN02529 222 GIHA--------NPLGVLARQLSIPLHKVRDNCPLYK-PDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDISLG 292 (738)
T ss_pred cccc--------chHHHHHHHhCCCccccCCCceEEe-CCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCCCHH
Confidence 8753 6788899999998887766666666 477777655555444455555555433222111112233344
Q ss_pred HHHHHHHHHHHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccccccc
Q 046008 1000 DGLEYALKRRRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSL 1079 (1624)
Q Consensus 1000 d~Le~~lk~~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl 1079 (1624)
++++... .. ....+++.++++++|++..++++++..+..+++
T Consensus 293 ~~le~~~-------------------------~~-------------~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl 334 (738)
T PLN02529 293 SVLERLR-------------------------QL-------------YGVARSTEERQLLDWHLANLEYANAGCLSDLSA 334 (738)
T ss_pred HHHHHHH-------------------------hh-------------hccCCCHHHHHHHHHHHHHhceecCCChHHhhh
Confidence 4332110 00 001256778899999999999999999999999
Q ss_pred cccccccccCCCCCccccccchHHHHHHHHhhhccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEcc
Q 046008 1080 PFWNQDDVYGGFGGAHCMIKGGYSTVVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITV 1159 (1624)
Q Consensus 1080 ~~~~~~~~y~g~~G~~~~VkGGm~sLveALAe~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAi 1159 (1624)
.+|.++..+ .++|.++++.|||++|+++|+++++|+||++|++|.+ .+++|+|++ ++.++.||+||+|+
T Consensus 335 ~~~~~~~~~-e~~G~~~~i~GG~~~Li~aLA~~L~IrLnt~V~~I~~---------~~dGVtV~t-~~~~~~AD~VIVTV 403 (738)
T PLN02529 335 AYWDQDDPY-EMGGDHCFLAGGNWRLINALCEGVPIFYGKTVDTIKY---------GNDGVEVIA-GSQVFQADMVLCTV 403 (738)
T ss_pred hHhhhcccc-ccCCceEEECCcHHHHHHHHHhcCCEEcCCceeEEEE---------cCCeEEEEE-CCEEEEcCEEEECC
Confidence 998775444 3677889999999999999999999999999999999 456788876 45689999999999
Q ss_pred ChhhhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEeccccCCCCcEEE
Q 046008 1160 PLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLI 1239 (1624)
Q Consensus 1160 P~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n~~ap~G~~vLv 1239 (1624)
|+++|+...|.|.|+||++++++|++++|++++||+|.|+++||+....+||+.......++.++.+|+....++.++|+
T Consensus 404 PlgVLk~~~I~F~PpLP~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~~fG~l~~~~~~~g~~~~~~~~~~~~ggpvLv 483 (738)
T PLN02529 404 PLGVLKKRTIRFEPELPRRKLAAIDRLGFGLLNKVAMVFPSVFWGEELDTFGCLNESSNKRGEFFLFYGYHTVSGGPALV 483 (738)
T ss_pred CHHHHHhccccCCCCCCHHHHHHHHcCCCceeEEEEEEeCCccccCCCCceEEEeccCCCCceEEEEecCCCCCCCCEEE
Confidence 99999877899999999999999999999999999999999999877678887765444566667777765555678999
Q ss_pred EEEeCccccccCCCCHHHHHHHHHHHHHHHhCC--CCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhhhCCccCC
Q 046008 1240 ALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGA--ASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILGRPVEN 1317 (1624)
Q Consensus 1240 ayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~--~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~tPV~g 1317 (1624)
+|+.|..+..++.++++++++.++.+|+++||. ..+|+|+.+++++|..+||++|+|+++.+|.....++.++.|+.+
T Consensus 484 afv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~g 563 (738)
T PLN02529 484 ALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSG 563 (738)
T ss_pred EEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCC
Confidence 999999999999999999999999999999984 346789999999999999999999999988877778888999877
Q ss_pred eEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHccCCCCchhHHHHHHhhhcCCCCcchhhhhhhhHhHhhhh-hhhh
Q 046008 1318 CLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTTGNDFTAEVEAMEAAQMQSESEGDEVRDITRRLEAVELS-NVLY 1396 (1624)
Q Consensus 1318 rLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 1396 (1624)
+||||||||+..|+||||||+.||+|||.+|++.++.+..+ .....++.++...+++.|+.++.+..==+ .++|
T Consensus 564 rL~FAGEaTs~~~pgtVeGAi~SG~RAA~eIl~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (738)
T PLN02529 564 RLFFAGEATTRQYPATMHGAFLSGLREASRILHVARSQQSN-----SRKSMQRNSGVSNDVLIDLFKRPDLAFGKFSFIF 638 (738)
T ss_pred CEEEEEHHHhCCCCeEeHHHHHHHHHHHHHHHHHHhhhhcc-----chhhhhccCCcchHHHHHhhcCccccccceEEEe
Confidence 79999999999999999999999999999999999865432 24456666776677777777765432111 4444
Q ss_pred cc-cchhhhhHhHHHHHHHHHhhccccc-hhHHHH
Q 046008 1397 KN-SLDRALILTRESLLQDMFFNAKTTA-GRLHLA 1429 (1624)
Q Consensus 1397 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~ 1429 (1624)
.. ..|+ ....+||.-|.+-+... +.|+||
T Consensus 639 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 669 (738)
T PLN02529 639 NPLTEDP----KSMGIMRVTFDNSGDDLNLPLQLY 669 (738)
T ss_pred cCCCCCC----cCceeEEEEecCCCCCCCccEEEE
Confidence 42 2233 44556666666554433 444444
No 5
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.3e-53 Score=518.90 Aligned_cols=448 Identities=46% Similarity=0.791 Sum_probs=371.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHH
Q 046008 857 DIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSL 936 (1624)
Q Consensus 857 ~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~ 936 (1624)
.....++|||||||+|||+||++|++.|++|+|||+++|+|||++|++...+..+|+|++|++|++. +|+..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~--------npl~~ 82 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYN--------NPLAL 82 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCc--------cHHHH
Confidence 3456789999999999999999999999999999999999999999997645559999999999876 58889
Q ss_pred HHHHhCCceeeecCCCCeeeccCCcccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhh---hccHHHHHHHHHHHHHHhh
Q 046008 937 VCAQLGLELTVLNSDCPLYDIVSGQKVPANVDEALEAEFNSLLDDMVLLVAQKGEHAM---KMSLEDGLEYALKRRRMAR 1013 (1624)
Q Consensus 937 LlkeLGLel~~l~~~~~~yd~~~Gk~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~---~~sled~Le~~lk~~r~~~ 1013 (1624)
+++|||++.......|++|.... ...+...+......++.++............... ..++.+.++......++..
T Consensus 83 l~~qlgl~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 161 (501)
T KOG0029|consen 83 LSKQLGLELYKVRDTCPLFNENG-GESDKVFDDFVEQEFNRLLDDASNLEQRLDNEIIGISDDSFGEALEAFLSASRLMK 161 (501)
T ss_pred HHHHhCcccceecccccccccCC-cccccccccchhhhhHHHHHHHhhhhhhhhhcccccccccHHHHHHhHHHHHHHHH
Confidence 99999999999999999988654 3333333444444555555544433322111111 2333333333222221110
Q ss_pred ccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccccccccccccccccCCCCC
Q 046008 1014 LGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGFGG 1093 (1624)
Q Consensus 1014 ~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~~~~y~g~~G 1093 (1624)
. ..+..+......++.|++.++++.+......++...|.++..|+..+
T Consensus 162 ~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 209 (501)
T KOG0029|consen 162 T-------------------------------LLELLLEGEADKVLQWHLVNLELTFIAHLENASARLWDQDELFGGGG- 209 (501)
T ss_pred h-------------------------------hHHHhhhhhhhHHHHHHHHHHHHHhhccHhHhhHHhhhhhhhccccc-
Confidence 0 00011111556688999999999999999999999999998887666
Q ss_pred ccccccchHHHHHHHHhhhccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhhhhhhcccCCC
Q 046008 1094 AHCMIKGGYSTVVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAESIMFSP 1173 (1624)
Q Consensus 1094 ~~~~VkGGm~sLveALAe~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~vLk~~~I~F~P 1173 (1624)
.|+.+.+|+..++.+|+.+|+|++++.|.+|.+. ++..+.|++.+|..+.||+||+|+|+++|+...|.|.|
T Consensus 210 ~~~~~~~G~~~v~~~la~~l~I~~~~~v~~i~~~--------~~~~~~~~~~~~~~~~~d~vvvt~pl~vLk~~~i~F~P 281 (501)
T KOG0029|consen 210 IHLLMKGGYEPVVNSLAEGLDIHLNKRVRKIKYG--------DDGAVKVTVETGDGYEADAVVVTVPLGVLKSGLIEFSP 281 (501)
T ss_pred chhHhhCCccHHHhhcCCCcceeeceeeEEEEEe--------cCCceEEEEECCCeeEeeEEEEEccHHHhccCceeeCC
Confidence 8899999999999999999999999999999995 23324555556666999999999999999988999999
Q ss_pred CCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEeccccCCCCcEEEEEEeCccccccCCC
Q 046008 1174 PLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNV 1253 (1624)
Q Consensus 1174 ~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n~~ap~G~~vLvayv~G~~A~~~e~l 1253 (1624)
+||.++.++|+++++|.++||+|.|++.||+.+..+||...+....++.+ .||+.....++++|.+++.|..+..+..+
T Consensus 282 ~Lp~~k~~aI~~lg~g~~~Kv~l~F~~~fW~~~~d~fg~~~~~~~~~~~~-~f~~~~~~~~~~~l~~~~~~~~a~~~~~~ 360 (501)
T KOG0029|consen 282 PLPRWKQEAIDRLGFGLVNKVILEFPRVFWDQDIDFFGIVPETSVLRGLF-TFYDCKPVAGHPVLMSVVVGEAAERVETL 360 (501)
T ss_pred CCcHHHHHHHHhcCCCceeEEEEEeccccCCCCcCeEEEccccccccchh-hhhhcCccCCCCeEEEEehhhhhHHHhcC
Confidence 99999999999999999999999999999998889999988777766655 67887777788899999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhhhCCccCCeEEEecCCccCCCCCc
Q 046008 1254 SPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAGEATCKEHPDT 1333 (1624)
Q Consensus 1254 SdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~tPV~grLyFAGEaTs~~~~Gt 1333 (1624)
+++++++.++..|+++|+...+++|+.+.+++|..+++++|+|++++++.....|+.+++|+.+|+||||++|+..|+|+
T Consensus 361 ~~~~~~~~~~~~l~k~f~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~~t 440 (501)
T KOG0029|consen 361 SDSEIVKKAMKLLRKVFGSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYPGT 440 (501)
T ss_pred CHHHHHHHHHHHHHHHhccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCCCc
Confidence 99999999999999999976789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcc
Q 046008 1334 VGGAMLSGLREAVRIIDILTT 1354 (1624)
Q Consensus 1334 VEGAi~SGiRAA~~IL~~L~~ 1354 (1624)
|+||+.||++||..|+..+..
T Consensus 441 m~GA~~sG~~~a~~i~~~~~~ 461 (501)
T KOG0029|consen 441 MHGAYLSGLRAASDILDSLIE 461 (501)
T ss_pred hHHHHHhhHHHHHHHHHHHHh
Confidence 999999999999999999984
No 6
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=2.3e-48 Score=475.61 Aligned_cols=424 Identities=38% Similarity=0.649 Sum_probs=311.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHHHh
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCAQL 941 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~LlkeL 941 (1624)
++|+|||||+|||+||++|.++|++|+|||+++|+|||++|... .|+++|+|++|+++.... +|+..|+++|
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~-~g~~~d~G~~~i~~~~~~-------~~~~~l~~~l 72 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYS-FGFPVDMGASWLHGVCNE-------NPLAPLIGRL 72 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCc-CCcccCCCCeeEeccCCC-------chHHHHHHHh
Confidence 47999999999999999999999999999999999999999875 589999999999874322 5677899999
Q ss_pred CCceeeecCCCCe-ee-------c--cCCcccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHH
Q 046008 942 GLELTVLNSDCPL-YD-------I--VSGQKVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRM 1011 (1624)
Q Consensus 942 GLel~~l~~~~~~-yd-------~--~~Gk~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~r~ 1011 (1624)
|++.......... |. . ..+..+|......+...+..++....... .......++.+++...+
T Consensus 73 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~~~~----- 144 (435)
T PLN02268 73 GLPLYRTSGDNSVLYDHDLESYALFDMDGNQVPQELVTKVGETFERILEETEKVR---DEHEEDMSLLQAISIVL----- 144 (435)
T ss_pred CCceEeccCCccccccccccccceecCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hccCCCcCHHHHHHHHh-----
Confidence 9976543322111 11 0 11223332222222111111111110000 00001122222221110
Q ss_pred hhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccccccccccccccccCCC
Q 046008 1012 ARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGF 1091 (1624)
Q Consensus 1012 ~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~~~~y~g~ 1091 (1624)
... + . .......+.++.+++..+...++.++..+++..|..... +
T Consensus 145 -------------------~~~-------~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~---~ 189 (435)
T PLN02268 145 -------------------ERH-------P---E---LRLEGLAHEVLQWYLCRMEGWFAADADTISLKSWDQEEL---L 189 (435)
T ss_pred -------------------hhC-------c---c---cccchHHHHHHHHHHHHHHHHhCCChHhCchhhcCCccc---c
Confidence 000 0 0 001123344454443333223566778888876654322 2
Q ss_pred CCccccccchHHHHHHHHhhhccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhhhhhhcccC
Q 046008 1092 GGAHCMIKGGYSTVVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAESIMF 1171 (1624)
Q Consensus 1092 ~G~~~~VkGGm~sLveALAe~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~vLk~~~I~F 1171 (1624)
.|.+.++.+||++|+++|+++++|++|++|++|.. .+++|.|++.+|+++.||+||+|+|+++|+...+.|
T Consensus 190 ~g~~~~~~~G~~~l~~~l~~~~~i~~~~~V~~i~~---------~~~~v~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f 260 (435)
T PLN02268 190 EGGHGLMVRGYDPVINTLAKGLDIRLNHRVTKIVR---------RYNGVKVTVEDGTTFVADAAIIAVPLGVLKANIIKF 260 (435)
T ss_pred CCCceeecCCHHHHHHHHhccCceeCCCeeEEEEE---------cCCcEEEEECCCcEEEcCEEEEecCHHHHhcCccee
Confidence 34567789999999999999999999999999998 356799999999899999999999999997666889
Q ss_pred CCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEeccccCCCCcEEEEEEeCccccccC
Q 046008 1172 SPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQ 1251 (1624)
Q Consensus 1172 ~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n~~ap~G~~vLvayv~G~~A~~~e 1251 (1624)
.|+||++++++|++++|++..||++.|+++||++. .++|...... ..+..+.+.....|.++|++|+.|..+..+.
T Consensus 261 ~p~lp~~~~~ai~~~~~g~~~Kv~l~f~~~fw~~~-~~~g~~~~~~---~~~~~~~~~~~~~g~~~l~~~~~g~~a~~~~ 336 (435)
T PLN02268 261 EPELPEWKEEAISDLGVGIENKIALHFDSVFWPNV-EFLGVVAPTS---YGCSYFLNLHKATGHPVLVYMPAGRLARDIE 336 (435)
T ss_pred cCCCCHHHHHHHHhCCccceeEEEEEeCCCCCCCC-ceeeccCCCC---CCceEEEecccCCCCCEEEEEeccHHHHHHH
Confidence 99999999999999999999999999999999764 4566543221 1122223333345778999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhhhCCccCCeEEEecCCccCCCC
Q 046008 1252 NVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAGEATCKEHP 1331 (1624)
Q Consensus 1252 ~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~tPV~grLyFAGEaTs~~~~ 1331 (1624)
.++++++++.++++|.++||. .+.|+.+.+++|..+||+.|+|++++||+...+++.+++|+++ |||||++|+..|+
T Consensus 337 ~~~~~e~~~~v~~~L~~~~~~--~~~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~-l~FAGe~ts~~~~ 413 (435)
T PLN02268 337 KLSDEAAANFAMSQLKKMLPD--ATEPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDN-LFFAGEATSSDFP 413 (435)
T ss_pred hCCHHHHHHHHHHHHHHHcCC--CCCccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCC-eEEeeccCCCccc
Confidence 999999999999999999985 4578999999999999999999999999888888999999976 9999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHH
Q 046008 1332 DTVGGAMLSGLREAVRIIDIL 1352 (1624)
Q Consensus 1332 GtVEGAi~SGiRAA~~IL~~L 1352 (1624)
||||||+.||+|||++|++.|
T Consensus 414 g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 414 GSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred ccHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999875
No 7
>PLN02568 polyamine oxidase
Probab=100.00 E-value=2.6e-47 Score=476.04 Aligned_cols=449 Identities=31% Similarity=0.447 Sum_probs=316.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-----CcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHH
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQG-----FSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSS 935 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g-----~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~ 935 (1624)
.++|+|||||++||+||++|++.| ++|+|||+++++||++++.... |+++|+|++|++|... +|+.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~-g~~~d~G~~~~~g~~~--------~~~~ 75 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFG-GERIEMGATWIHGIGG--------SPVY 75 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeC-CeEEecCCceeCCCCC--------CHHH
Confidence 478999999999999999999988 8999999999999999999874 8999999999998642 6788
Q ss_pred HHHHHhCCceeeec-------CCCCeeeccCCcccCcchHHHHHHHHHHHHHHHHHHHH--------------H----hh
Q 046008 936 LVCAQLGLELTVLN-------SDCPLYDIVSGQKVPANVDEALEAEFNSLLDDMVLLVA--------------Q----KG 990 (1624)
Q Consensus 936 ~LlkeLGLel~~l~-------~~~~~yd~~~Gk~vp~~l~~~l~~~~~slld~l~~~~~--------------~----~g 990 (1624)
.|++++|+...... .+.+.+...+|..++......+...+..+++.+..... . ..
T Consensus 76 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 155 (539)
T PLN02568 76 KIAQEAGSLESDEPWECMDGFPDRPKTVAEGGFEVDPSIVESISTLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVC 155 (539)
T ss_pred HHHHHhCCccccCcceecccccccceEEccCCcCCCHHHHHHHHHHHHHHHHHhhcccccccccccccccccchhccchh
Confidence 89999998543221 11233444567766655555555555555544321100 0 00
Q ss_pred hhhhhccHHHHHHHHHHHHHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhc
Q 046008 991 EHAMKMSLEDGLEYALKRRRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGC 1070 (1624)
Q Consensus 991 ~~a~~~sled~Le~~lk~~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ 1070 (1624)
......++.+++...+.. .+... .+.+ ...++...+. .-..+.++.++ ..++. +
T Consensus 156 ~~~~~~Sl~~fl~~~l~~-~~~~~------------~~p~--~~~~~~~~~~---------~~~~~~~~~~~-~~~e~-~ 209 (539)
T PLN02568 156 ESGGGGSVGSFLRRGLDA-YWDSV------------SADE--QIKGYGGWSR---------KLLEEAIFTMH-ENTQR-T 209 (539)
T ss_pred ccCCCCcHHHHHHHHHHH-HHhhc------------ccch--hhccccchhH---------HHHHHHHHHHH-HHhhc-c
Confidence 000011334443322211 00000 0000 0000000000 00012223222 22232 2
Q ss_pred ccccccccccccccccccCCCCCccccccchHHHHHHHHhhhcc---ccccceEEEEEecCCCCCCCCCCCcEEEEeCCC
Q 046008 1071 AALLKEVSLPFWNQDDVYGGFGGAHCMIKGGYSTVVEALGKELL---IHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNG 1147 (1624)
Q Consensus 1071 ga~l~~vSl~~~~~~~~y~g~~G~~~~VkGGm~sLveALAe~L~---IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadG 1147 (1624)
...+..++...+.....|..+.|.++++.||+++|+++|++.+. |++|++|++|.+ .+++|.|++.+|
T Consensus 210 ~~~~~~ls~ls~~~~~~~~~~~g~~~~i~gG~~~Li~~La~~L~~~~I~ln~~V~~I~~---------~~~~v~V~~~dG 280 (539)
T PLN02568 210 YTSADDLSTLDLAAESEYRMFPGEEITIAKGYLSVIEALASVLPPGTIQLGRKVTRIEW---------QDEPVKLHFADG 280 (539)
T ss_pred ccccccHhhccccccCcceecCCCeEEECCcHHHHHHHHHhhCCCCEEEeCCeEEEEEE---------eCCeEEEEEcCC
Confidence 23344433433333333444567788899999999999999994 999999999998 456799999999
Q ss_pred cEEEcCEEEEccChhhhhhh----cccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCC-----CccccccccccC
Q 046008 1148 SEFSGDAVLITVPLGCLKAE----SIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDT-----VDYFGATAKETD 1218 (1624)
Q Consensus 1148 eti~AD~VIsAiP~~vLk~~----~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~-----~~~fG~~~~~~~ 1218 (1624)
+++.||+||+|+|+++|+.. .+.|.|+||..++++|++++||.++||+|.|+++||... ...+++.....+
T Consensus 281 ~~~~aD~VIvTvPl~vL~~~~~~~~i~F~P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~ 360 (539)
T PLN02568 281 STMTADHVIVTVSLGVLKAGIGEDSGLFSPPLPDFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSD 360 (539)
T ss_pred CEEEcCEEEEcCCHHHHhhccccccceecCCCCHHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccc
Confidence 99999999999999999853 368999999999999999999999999999999999642 111222111100
Q ss_pred --CCCceeEEe-----ccc-cCCCCcEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHhCCCCC---------------
Q 046008 1219 --LRGRCFMFW-----NVR-KTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASV--------------- 1275 (1624)
Q Consensus 1219 --~rg~~~~~~-----n~~-ap~G~~vLvayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~v--------------- 1275 (1624)
.+...+.+| +.. ...+.++|++|+.|..|..++.++++++++.++..|+++||....
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~ 440 (539)
T PLN02568 361 SEARHDKIPWWMRRTASICPIHKNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGAS 440 (539)
T ss_pred hhhhcccccchhhccccccccCCCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccc
Confidence 000000111 111 123678999999999999999999999999999999999985422
Q ss_pred ------CCCceEEEeecCCCCCCcccccccCCCCCCchhhhhCCccC------------CeEEEecCCccCCCCCcHHHH
Q 046008 1276 ------PDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILGRPVE------------NCLFFAGEATCKEHPDTVGGA 1337 (1624)
Q Consensus 1276 ------pdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~tPV~------------grLyFAGEaTs~~~~GtVEGA 1337 (1624)
+.|+.+++++|..+||++|+|+|++||+...+++.+++|++ ++||||||+|+..|+|||+||
T Consensus 441 ~~~~~~~~p~~~~~t~W~~dp~~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~~Tv~GA 520 (539)
T PLN02568 441 SNDGSRWKFVKVLKSKWGTDPLFLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHYSTTHGA 520 (539)
T ss_pred cccccCCCCceEEeCCCCCCCccCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCccchHHHH
Confidence 46899999999999999999999999999888899999986 269999999999999999999
Q ss_pred HHHHHHHHHHHHHHHc
Q 046008 1338 MLSGLREAVRIIDILT 1353 (1624)
Q Consensus 1338 i~SGiRAA~~IL~~L~ 1353 (1624)
+.||+|||++|+...+
T Consensus 521 ~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 521 YFSGLREANRLLQHYK 536 (539)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998875
No 8
>PLN02676 polyamine oxidase
Probab=100.00 E-value=1.9e-46 Score=464.71 Aligned_cols=434 Identities=26% Similarity=0.427 Sum_probs=311.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHH
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGF-SVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSL 936 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~-~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~ 936 (1624)
....++|+|||||++||+||++|+++|+ +|+|||+++++||++.+... .|+.+|+|++|+++.+.. ..+++..
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~~-----~~~~~~~ 96 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANF-AGVSVELGANWVEGVGGP-----ESNPIWE 96 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecC-CCeEEecCCEEEEcccCc-----ccChHHH
Confidence 3457899999999999999999999998 69999999999999999876 489999999999875322 1277888
Q ss_pred HHHHhCCceeeecCC---CCeeeccCCcccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHhh
Q 046008 937 VCAQLGLELTVLNSD---CPLYDIVSGQKVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMAR 1013 (1624)
Q Consensus 937 LlkeLGLel~~l~~~---~~~yd~~~Gk~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~r~~~ 1013 (1624)
+++++|+.......+ ..+|. .+|..++... ...+...+..+.......... .
T Consensus 97 l~~~~g~~~~~~~~~~~~~~~~~-~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----------------~--- 151 (487)
T PLN02676 97 LANKLKLRTFYSDFDNLSSNIYK-QDGGLYPKKV----VQKSMKVADASDEFGENLSIS-----------------L--- 151 (487)
T ss_pred HHHhcCCceeecCccccceeEEC-CCCCCCCHHH----HHHHHHHHHHHHHHHHHHHHh-----------------h---
Confidence 999999987643322 12233 3566554211 111122222211110000000 0
Q ss_pred ccCCcccccccchhhHhhcccCCCCCCCCcccchhcc-CCHHHHHHHHHHHHhhhhhcccccccccccccccccccCCCC
Q 046008 1014 LGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDI-LSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGFG 1092 (1624)
Q Consensus 1014 ~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~-Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~~~~y~g~~ 1092 (1624)
.. .........+.. .+.+.. ..+.... +.++.. .+.++..+..+|+.++.....|..++
T Consensus 152 ~~---~~~~~~s~~~~~--------------~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~S~~~~~~~~~~~~~g 211 (487)
T PLN02676 152 SA---KKAVDISILTAQ--------------RLFGQVPKTPLEMV-IDYYNY--DYEFAEPPRVTSLKNTEPNPTFVDFG 211 (487)
T ss_pred cc---cCCCCccHHHHH--------------HHHhhCCCCHHHHH-HHHHhc--cceeccCccccchhhcCcccccccCC
Confidence 00 000000000000 000000 1111111 222211 12245677778877654333444455
Q ss_pred Cccccc--cchHHHHHHHHhhhc-----------cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEcc
Q 046008 1093 GAHCMI--KGGYSTVVEALGKEL-----------LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITV 1159 (1624)
Q Consensus 1093 G~~~~V--kGGm~sLveALAe~L-----------~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAi 1159 (1624)
+..+++ +|||++|+++|++.+ +|+||++|++|.. .+++|.|++.+|+++.||+||+|+
T Consensus 212 ~~~~~~~~~~G~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~---------~~~gV~V~~~~G~~~~a~~VIvtv 282 (487)
T PLN02676 212 EDEYFVADPRGYESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISY---------SKNGVTVKTEDGSVYRAKYVIVSV 282 (487)
T ss_pred CceEEeecCCCHHHHHHHHHhhcccccccccCCCceecCCEeeEEEE---------cCCcEEEEECCCCEEEeCEEEEcc
Confidence 566666 789999999999865 4999999999998 456899999999999999999999
Q ss_pred ChhhhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEeccc-cCCCCcEE
Q 046008 1160 PLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWNVR-KTVGAPVL 1238 (1624)
Q Consensus 1160 P~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n~~-ap~G~~vL 1238 (1624)
|+++|+...|.|.|+||++++++|++++|+.++||++.|+++||+......+...... .++....++... .+++.++|
T Consensus 283 Pl~vLk~~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 361 (487)
T PLN02676 283 SLGVLQSDLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSGPGTEFFLYAHE-RRGYYPFWQHLENEYPGSNVL 361 (487)
T ss_pred ChHHhccCceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCCCCceeeeeecc-ccccchhhhhcccCCCCCCEE
Confidence 9999987679999999999999999999999999999999999986422222111111 112111122111 23456789
Q ss_pred EEEEeCccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhhhCCccCCe
Q 046008 1239 IALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENC 1318 (1624)
Q Consensus 1239 vayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~tPV~gr 1318 (1624)
++++.|..+..+..++++++++.+++.|+++||. .++.|+.+..++|..+||++|+|++++||....+++.+++|++ |
T Consensus 362 ~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~~g~-~~~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~g-r 439 (487)
T PLN02676 362 FVTVTDEESRRIEQQPDSETKAEIMEVLRKMFGP-NIPEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVG-R 439 (487)
T ss_pred EEEechHHHHHHHhCCHHHHHHHHHHHHHHHhCC-CCCCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCC-c
Confidence 8999999899899999999999999999999985 4678999999999999999999999999998888899999996 5
Q ss_pred EEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcc
Q 046008 1319 LFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTT 1354 (1624)
Q Consensus 1319 LyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~~ 1354 (1624)
||||||+|+..|+||||||+.||+|||.+|+..+..
T Consensus 440 i~FAGe~ts~~~~g~~eGA~~SG~RaA~~I~~~l~~ 475 (487)
T PLN02676 440 VYFTGEHTSEKYNGYVHGAYLAGIDTANDLLECIKK 475 (487)
T ss_pred eEEeccccccccccchHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999975
No 9
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.1e-45 Score=428.36 Aligned_cols=438 Identities=31% Similarity=0.465 Sum_probs=311.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHH
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGF-SVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLV 937 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~-~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~L 937 (1624)
....+|+|||||+|||+||.+|-+.|+ +|+|||+.+|+|||++|....++ .+|+||+|++|... ||+..+
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~-~ielGAqwihG~~g--------NpVY~l 89 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADG-VIELGAQWIHGEEG--------NPVYEL 89 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCC-eEeecceeecCCCC--------ChHHHH
Confidence 345699999999999999999997765 69999999999999999998755 89999999999443 788899
Q ss_pred HHHhC-CceeeecCC---CCeeeccCCcccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHhh
Q 046008 938 CAQLG-LELTVLNSD---CPLYDIVSGQKVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMAR 1013 (1624)
Q Consensus 938 lkeLG-Lel~~l~~~---~~~yd~~~Gk~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~r~~~ 1013 (1624)
.+++| +.+...... .......+|..+|..+...+...+..+..... +........+.+.++...+.......
T Consensus 90 a~~~g~~~~~~~tg~~~~~~~~~~~~g~~V~~~~~~~~~~~~~~~~~~~r----~~~~~~~~~SvG~~ln~~~~~~~~~~ 165 (498)
T KOG0685|consen 90 AKEYGDLKLLEVTGPAYVDNFHTRSNGEVVPEELLDELNEITVTLSDKLR----EAEIAHDEGSVGEYLNSEFWDELRGP 165 (498)
T ss_pred HHHhCccceeccCCccccceeEEEecCccCcHHHHHHHHHHHHhhhhhcc----cccccCccccHHHHHHHHHHHHhccc
Confidence 99998 322211111 11122346777775544332222221111111 10001112334444432221110000
Q ss_pred ccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHH-hhhhhcccccccccccccccccccCCCC
Q 046008 1014 LGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFA-NLEYGCAALLKEVSLPFWNQDDVYGGFG 1092 (1624)
Q Consensus 1014 ~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a-~ley~~ga~l~~vSl~~~~~~~~y~g~~ 1092 (1624)
-.+. .-.....++++.++- ...+.....+.++++..+..+.. .+
T Consensus 166 -------------------------e~~~-------~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~~ey~~---~~ 210 (498)
T KOG0685|consen 166 -------------------------ENPE-------IDKTLAEEILNVYFKVECSITGADNLSEVSLRALLEYTE---CP 210 (498)
T ss_pred -------------------------cccc-------hhhHHHHHHHHHHHHHheeeeccCchhhhhhhhccceee---cC
Confidence 0000 000112233333321 11222344677777765543333 33
Q ss_pred C--ccccccchHHHHHHHHhhhc-----------cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEcc
Q 046008 1093 G--AHCMIKGGYSTVVEALGKEL-----------LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITV 1159 (1624)
Q Consensus 1093 G--~~~~VkGGm~sLveALAe~L-----------~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAi 1159 (1624)
| .....+-||..+++-|+..+ +|++|++|.+|... ..+.|.|+..||+.+.||+||+|+
T Consensus 211 ge~~~~~~~kGy~~iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~--------~~~~v~l~c~dg~v~~adhVIvTv 282 (498)
T KOG0685|consen 211 GEELLIWNKKGYKRILKLLMAVIPAQNIELGLWKRIHLNTRVENINWK--------NTGEVKLRCSDGEVFHADHVIVTV 282 (498)
T ss_pred chhhheechhHHHHHHHHHhccCCCcchhcCchhhhcccccceeeccC--------CCCcEEEEEeCCcEEeccEEEEEe
Confidence 4 55667899999999998866 35666999999984 457899999999999999999999
Q ss_pred Chhhhhhh-cccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccC---CCCc-------eeEEec
Q 046008 1160 PLGCLKAE-SIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETD---LRGR-------CFMFWN 1228 (1624)
Q Consensus 1160 P~~vLk~~-~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~---~rg~-------~~~~~n 1228 (1624)
++++|+.. .-.|.|+||..|++||++++||+++||+|.|.+|||+.+...+-+...+.. .+.. ++.|..
T Consensus 283 sLGvLk~~h~~lF~P~LP~~K~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~ 362 (498)
T KOG0685|consen 283 SLGVLKEQHHKLFVPPLPAEKQRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQP 362 (498)
T ss_pred echhhhhhhhhhcCCCCCHHHHHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEE
Confidence 99999864 447999999999999999999999999999999999987555544433222 1111 122333
Q ss_pred cccCCCCcEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCCCchh
Q 046008 1229 VRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDY 1308 (1624)
Q Consensus 1229 ~~ap~G~~vLvayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~ 1308 (1624)
.... ..+|.+++.|..+..++.+++|++.+.++..|++++++..+|.|..++.+.|..+||++|+|+|.++|+....-
T Consensus 363 v~~~--~~vL~gWiaG~~~~~me~lsdEev~e~~~~~lr~fl~n~~iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~ 440 (498)
T KOG0685|consen 363 VSWA--PNVLLGWIAGREARHMETLSDEEVLEGLTKLLRKFLKNPEIPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDT 440 (498)
T ss_pred cCcc--hhhhheeccCCcceehhhCCHHHHHHHHHHHHHHhcCCCCCCCchhhhhhcccCCCccCceeeEeecccccccc
Confidence 3322 26999999999999999999999999999999999998889999999999999999999999999999877666
Q ss_pred hhhCCccC-----C--eEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcc
Q 046008 1309 DILGRPVE-----N--CLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTT 1354 (1624)
Q Consensus 1309 d~L~tPV~-----g--rLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~~ 1354 (1624)
+.+..|++ + +|.||||||...+..|++||++||+|+|++++..+..
T Consensus 441 ~~~a~p~p~~~~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~~y~~ 493 (498)
T KOG0685|consen 441 GALALPLPLTLVTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLEHYES 493 (498)
T ss_pred chhhccCCccccCCCceEEEccccccccceehhhhhHHhhHHHHHHHHHHHHh
Confidence 65554442 1 5999999999999999999999999999999996653
No 10
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=100.00 E-value=7.3e-40 Score=386.86 Aligned_cols=431 Identities=26% Similarity=0.374 Sum_probs=290.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHH
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVC 938 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~Ll 938 (1624)
....+|||||||++||+||+.|.++||+|+|||+++++|||+.+.+. .+...|+|++++...+ ++...++
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~---------~~~l~~~ 74 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTH---------DALLAYA 74 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccc---------hhhhhhH
Confidence 56789999999999999999999999999999999999999999987 5888999998887733 4556699
Q ss_pred HHhCCceeeecCCCCeeeccCCc--ccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc---HHHHHHHHHHHHHHhh
Q 046008 939 AQLGLELTVLNSDCPLYDIVSGQ--KVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMS---LEDGLEYALKRRRMAR 1013 (1624)
Q Consensus 939 keLGLel~~l~~~~~~yd~~~Gk--~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~s---led~Le~~lk~~r~~~ 1013 (1624)
+++|+++..+..+......+.+. ..|...... ..++......+.....-.+....... .+..++ .+.... .
T Consensus 75 k~~gv~~~~fi~~g~~~~~~~~~~~~~p~~~~~~-~~d~~~~~~~~~~~a~~~~~~~~~~t~~~~e~~~~-~~~~W~-~- 150 (450)
T COG1231 75 KEFGVPLEPFIRDGDNVIGYVGSSKSTPKRSLTA-AADVRGLVAELEAKARSAGELDPGLTPEDRELDLE-SLAAWK-T- 150 (450)
T ss_pred HhcCCCCCceeccCcccccccccccccchhccch-hhhhcchhhhhhhhhhcccccCcccCcchhhhhhH-HHHhhh-h-
Confidence 99999988776533322111111 111111000 00111000000000000000000000 000000 000000 0
Q ss_pred ccCCcccccccchhhHhhcccCC--C-CCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccccccccccccccccCC
Q 046008 1014 LGRGREDASMHNSMDVYSKTSSV--D-SRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGG 1090 (1624)
Q Consensus 1014 ~~~~~~~~~~~~a~d~fs~~~~i--~-~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~~~~y~g 1090 (1624)
.....|...+.. . ...... +..+.........| ..+... ....
T Consensus 151 -----------~~~~~~~~~~~a~~~~g~~~~~----~~~~~~d~~~~~~~-------------~~~~~~------~~~e 196 (450)
T COG1231 151 -----------SSLRGLSRDPGARVSPGPIEPG----DVSLLHDALPLRSA-------------SVVDRG------IGGE 196 (450)
T ss_pred -----------ccccccccCccceeccCCCCcc----cccchhhhhhhhhh-------------hhcccc------cccc
Confidence 000000000000 0 000000 00000000000000 000000 0001
Q ss_pred CCCccccccchHHHHHHHHhhhc--cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhhhhhhc
Q 046008 1091 FGGAHCMIKGGYSTVVEALGKEL--LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAES 1168 (1624)
Q Consensus 1091 ~~G~~~~VkGGm~sLveALAe~L--~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~vLk~~~ 1168 (1624)
.....+...|||+.|+++++..| .|+++++|.+|.. .+++|+|++.+..++.+|+||||+|+.+|. .
T Consensus 197 ~~~~~~~~~GGmd~la~Afa~ql~~~I~~~~~V~rI~q---------~~~gV~Vt~~~~~~~~ad~~i~tiPl~~l~--q 265 (450)
T COG1231 197 IRTQMLQRLGGMDQLAEAFAKQLGTRILLNEPVRRIDQ---------DGDGVTVTADDVGQYVADYVLVTIPLAILG--Q 265 (450)
T ss_pred ccchhhccCccHHHHHHHHHHHhhceEEecCceeeEEE---------cCCeEEEEeCCcceEEecEEEEecCHHHHh--h
Confidence 12233444599999999999999 8999999999998 578999999885699999999999999887 6
Q ss_pred ccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEeccc-cCCCCcEEEE-EEeCcc
Q 046008 1169 IMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWNVR-KTVGAPVLIA-LVVGKA 1246 (1624)
Q Consensus 1169 I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n~~-ap~G~~vLva-yv~G~~ 1246 (1624)
|.|.|++|+.+++++..++|++.+|+.+.|+++||+++..+-|....+. +..+.+|+.. ...|..+|.+ |++|..
T Consensus 266 I~f~P~l~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~~~l~G~~~tD~---~~~~i~~~s~~~~~G~gVl~g~~~~g~~ 342 (450)
T COG1231 266 IDFAPLLPAEYKQAAKGVPYGSATKIGVAFSRPFWEEAGILGGESLTDL---GLGFISYPSAPFADGPGVLLGSYAFGDD 342 (450)
T ss_pred cccCCCCCHHHHHHhcCcCcchheeeeeecCchhhhhcccCCceEeecC---CcceEecCccccCCCceEEEeeeecccc
Confidence 9999999999999999999999999999999999998753444443333 2344555554 2356666666 777999
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceE-EEeecCCCCCCcccccccCCCCCCchhhhhCCccCCeEEEecCC
Q 046008 1247 AVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVAS-VVTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAGEA 1325 (1624)
Q Consensus 1247 A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~i-vvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~tPV~grLyFAGEa 1325 (1624)
+..|..++++++++.++..|.++||+... ++.+. ...+|..+||+.|+|.++.+|+...+++.+..|.++ |||||++
T Consensus 343 A~~~~~~~~~~r~~~vl~~l~~~~g~~a~-~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gR-Ih~AgtE 420 (450)
T COG1231 343 ALVIDALPEAERRQKVLARLAKLFGDEAA-DPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGR-IHFAGTE 420 (450)
T ss_pred ceeEecCCHHHHHHHHHHhHhhhCChhhc-cccccceeeecccCCcCCccccccCCcccccccccccCCCCc-eEEeeec
Confidence 99999999999999999999999997543 44544 899999999999988899999999999999999865 9999955
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 046008 1326 TCKEHPDTVGGAMLSGLREAVRIIDILT 1353 (1624)
Q Consensus 1326 Ts~~~~GtVEGAi~SGiRAA~~IL~~L~ 1353 (1624)
+.+.|+|||+||+.||++||.+|.+.+.
T Consensus 421 has~~~Gw~eGAi~Sg~~AA~ei~~~l~ 448 (450)
T COG1231 421 HASEFGGWLEGAIRSGQRAAAEIHALLS 448 (450)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHhhc
Confidence 5566999999999999999999998875
No 11
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=100.00 E-value=5.1e-37 Score=366.39 Aligned_cols=240 Identities=34% Similarity=0.542 Sum_probs=199.6
Q ss_pred ccccchHHHHHHHHhhhc--cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhhhhhhcccCCC
Q 046008 1096 CMIKGGYSTVVEALGKEL--LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAESIMFSP 1173 (1624)
Q Consensus 1096 ~~VkGGm~sLveALAe~L--~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~vLk~~~I~F~P 1173 (1624)
....|++..+...++..+ +|++|++|++|.+ .+++|.|++.+|.++.||+||+|+|++.|.. +.|.|
T Consensus 205 ~~~~g~~~~~~~~~~~~~g~~i~l~~~V~~I~~---------~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~--i~~~p 273 (450)
T PF01593_consen 205 TVGMGGLSLALALAAEELGGEIRLNTPVTRIER---------EDGGVTVTTEDGETIEADAVISAVPPSVLKN--ILLLP 273 (450)
T ss_dssp EEETTTTHHHHHHHHHHHGGGEESSEEEEEEEE---------ESSEEEEEETTSSEEEESEEEE-S-HHHHHT--SEEES
T ss_pred eecccchhHHHHHHHhhcCceeecCCcceeccc---------cccccccccccceEEecceeeecCchhhhhh--hhhcc
Confidence 334666677766666533 8999999999999 4678999999999999999999999999874 78899
Q ss_pred CCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEecc-ccC--CCCcEEEEEEeCcccccc
Q 046008 1174 PLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWNV-RKT--VGAPVLIALVVGKAAVDG 1250 (1624)
Q Consensus 1174 ~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n~-~ap--~G~~vLvayv~G~~A~~~ 1250 (1624)
++|..+.++++.++|+++.+|+|.|+.+||..+...+|....+.. .....++.. ..+ ++..++++|+.+..+..+
T Consensus 274 ~l~~~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 351 (450)
T PF01593_consen 274 PLPEDKRRAIENLPYSSVSKVFLGFDRPFWPPDIDFFGILYSDGF--SPIGYVSDPSKFPGRPGGGVLTSYVGGPDAPEW 351 (450)
T ss_dssp TSHHHHHHHHHTEEEEEEEEEEEEESSGGGGSTTTESEEEEESST--SSEEEEEEECCTTSCTTSEEEEEEEEHHHHHHH
T ss_pred cccccccccccccccCcceeEEEeeecccccccccccceecccCc--cccccccccccCcccccCCcceeeeeccccchh
Confidence 999999999999999999999999999999986556666544331 122222222 222 357799999999888889
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhhhCCccC-CeEEEecCCccCC
Q 046008 1251 QNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILGRPVE-NCLFFAGEATCKE 1329 (1624)
Q Consensus 1251 e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~tPV~-grLyFAGEaTs~~ 1329 (1624)
..++++++++.++++|+++||....++|..+.+++|..++|..|+|++..++....+++.+++|+. | |||||+||++.
T Consensus 352 ~~~~~e~~~~~~~~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~aG~~~~~~ 430 (450)
T PF01593_consen 352 DDLSDEEILERVLDDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPG-LYFAGDWTSPG 430 (450)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTT-EEE-SGGGSSS
T ss_pred cccchhhhHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceE-EEEeecccCCC
Confidence 999999999999999999999655788889999999999999999999888876567888999995 6 99999999998
Q ss_pred CCCcHHHHHHHHHHHHHHHH
Q 046008 1330 HPDTVGGAMLSGLREAVRII 1349 (1624)
Q Consensus 1330 ~~GtVEGAi~SGiRAA~~IL 1349 (1624)
|.|+|+||+.||.+||++||
T Consensus 431 ~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 431 YPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp STTSHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 88999999999999999986
No 12
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=1.9e-34 Score=355.26 Aligned_cols=434 Identities=20% Similarity=0.268 Sum_probs=274.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHH
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQ----GFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSL 936 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~----g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~ 936 (1624)
+++|+|||||++||+||++|+++ |++|+|||+++++||+++|... .|+.+|.|+|+|++.+++ +..
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~-~g~~~e~G~~~~~~~~~~---------~~~ 71 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKE-DGYLIERGPDSFLERKKS---------APD 71 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEee-CCEEEecCccccccCChH---------HHH
Confidence 47899999999999999999999 9999999999999999999986 489999999999976543 456
Q ss_pred HHHHhCCceeeec-CCCCeeeccC-Ccc--cCcchHHHHHHHHHHHHHHHHHHHHHhh--hhhhhccHHHHHHHHHHHHH
Q 046008 937 VCAQLGLELTVLN-SDCPLYDIVS-GQK--VPANVDEALEAEFNSLLDDMVLLVAQKG--EHAMKMSLEDGLEYALKRRR 1010 (1624)
Q Consensus 937 LlkeLGLel~~l~-~~~~~yd~~~-Gk~--vp~~l~~~l~~~~~slld~l~~~~~~~g--~~a~~~sled~Le~~lk~~r 1010 (1624)
++++||+...... .....|.+.. |.. +|......+...+..+...+........ ......++.+++...+....
T Consensus 72 l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~~g~~~ 151 (462)
T TIGR00562 72 LVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRRFGDEV 151 (462)
T ss_pred HHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHhcCHHH
Confidence 9999999765433 2222333333 543 3433222221111111111111111000 01112555665543221110
Q ss_pred HhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccc---cc-ccccccccc
Q 046008 1011 MARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLK---EV-SLPFWNQDD 1086 (1624)
Q Consensus 1011 ~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~---~v-Sl~~~~~~~ 1086 (1624)
...+.++|... +....++. ++. ...+.. +...+...+.... .. .........
T Consensus 152 ------------~~~~~~p~~~~--~~~~~~~~-------ls~--~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 207 (462)
T TIGR00562 152 ------------VENLIEPLLSG--IYAGDPSK-------LSL--KSTFPK-FYQTEQKHGSLILGMKKTRNLPQGSGLQ 207 (462)
T ss_pred ------------HHHHHHHHhcc--cccCCHHH-------hhH--HHHhHH-HHHHHHhcCcHHHHHHhhcccCcccccc
Confidence 01111111110 11111100 000 000000 0000000000000 00 000000001
Q ss_pred ccCCCCC-ccccccchHHHHHHHHhhhc---cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChh
Q 046008 1087 VYGGFGG-AHCMIKGGYSTVVEALGKEL---LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLG 1162 (1624)
Q Consensus 1087 ~y~g~~G-~~~~VkGGm~sLveALAe~L---~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~ 1162 (1624)
.|....| ..+.+.||+++|+++|++.+ +|++|++|++|.. .+++|+|++.+|+++.||+||+|+|++
T Consensus 208 ~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~---------~~~~~~v~~~~g~~~~ad~VI~t~P~~ 278 (462)
T TIGR00562 208 LTAKKQGQDFQTLATGLETLPEEIEKRLKLTKVYKGTKVTKLSH---------RGSNYTLELDNGVTVETDSVVVTAPHK 278 (462)
T ss_pred ccccccCCceEecchhHHHHHHHHHHHhccCeEEcCCeEEEEEe---------cCCcEEEEECCCcEEEcCEEEECCCHH
Confidence 1111122 25678999999999999987 5999999999998 456788988888899999999999999
Q ss_pred hhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEec-----cccCCCCcE
Q 046008 1163 CLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN-----VRKTVGAPV 1237 (1624)
Q Consensus 1163 vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n-----~~ap~G~~v 1237 (1624)
.+.. +.|++|+...+++.++.|+++.+|++.|+.++|+.....||+.............+|+ ...+++.++
T Consensus 279 ~~~~----ll~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~i~~s~~~p~~~p~g~~~ 354 (462)
T TIGR00562 279 AAAG----LLSELSNSASSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGCIFTSKLFPNRAPPGKTL 354 (462)
T ss_pred HHHH----HhcccCHHHHHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEEEEEccccCCcCCCCcEE
Confidence 8753 3467888999999999999999999999999998655667765443222222223333 334567778
Q ss_pred EEEEEeCccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCCC---chhhhhCCc
Q 046008 1238 LIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASG---EDYDILGRP 1314 (1624)
Q Consensus 1238 Lvayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~---~~~d~L~tP 1314 (1624)
|++|+.|..+..+..++++++++.+++.|+++||.. .+|..+.+++|.. +|....+|... ...+.+..+
T Consensus 355 l~~~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~--~~p~~~~v~rw~~------a~P~~~~g~~~~~~~i~~~l~~~ 426 (462)
T TIGR00562 355 LTAYIGGATDESIVDLSENEIINIVLRDLKKVLNIN--NEPEMLCVTRWHR------AIPQYHVGHDQRLKEARELLESA 426 (462)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHHHhCCC--CCCcEEEEeEccc------cCCCCCCChHHHHHHHHHHHHhh
Confidence 888888877778888999999999999999999853 2488889999984 45544555422 112234444
Q ss_pred cCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 046008 1315 VENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILT 1353 (1624)
Q Consensus 1315 V~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~ 1353 (1624)
.+| ||+||+++.. ..|++|+.+|.++|++|+..|.
T Consensus 427 ~~~-l~l~G~~~~g---~~i~~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 427 YPG-VFLTGNSFEG---VGIPDCIDQGKAAASDVLTFLF 461 (462)
T ss_pred CCC-EEEeccccCC---CcHHHHHHHHHHHHHHHHHhhc
Confidence 556 9999998642 3799999999999999998874
No 13
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=2.6e-33 Score=345.92 Aligned_cols=428 Identities=18% Similarity=0.241 Sum_probs=256.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHC------CCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHH
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQ------GFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSS 935 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~------g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~ 935 (1624)
++|+|||||++||+||++|+++ |++|+|||+++++||+++|.... |+++|+|+||+.+.+.+ +.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~-g~~~e~G~~~i~~~~~~---------~~ 71 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK-DFIMESGADSIVARNEH---------VM 71 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC-CEEEecCcHHHhcCCHH---------HH
Confidence 5799999999999999999986 37899999999999999999874 89999999999875433 34
Q ss_pred HHHHHhCCceeeecCCC-CeeeccCCccc--Ccc--------hHHHHHHHHHHHHHHHHH---HHHHhhhhhhhccHHHH
Q 046008 936 LVCAQLGLELTVLNSDC-PLYDIVSGQKV--PAN--------VDEALEAEFNSLLDDMVL---LVAQKGEHAMKMSLEDG 1001 (1624)
Q Consensus 936 ~LlkeLGLel~~l~~~~-~~yd~~~Gk~v--p~~--------l~~~l~~~~~slld~l~~---~~~~~g~~a~~~sled~ 1001 (1624)
.|+++||++...+.... ..|.+..|... |.. ....+...+..+...+.. .+..........++.+|
T Consensus 72 ~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~ 151 (463)
T PRK12416 72 PLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVALKDFITKNKEFTKDTSLALF 151 (463)
T ss_pred HHHHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHHHHhhhhhccCCCCCCCCCCHHHH
Confidence 69999999866554322 23333344322 211 111111000000011111 11000000113344444
Q ss_pred HHHHHHHHHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccccccccc
Q 046008 1002 LEYALKRRRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPF 1081 (1624)
Q Consensus 1002 Le~~lk~~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~ 1081 (1624)
+...+.... ...+.+.+. .++....+.. ++.. ..+-+ +..++..++..+..+..
T Consensus 152 l~~~~~~~~------------~~~~~~p~~--~~~~~~~~~~-------ls~~--~~~~~-~~~~~~~~~s~~~~~~~-- 205 (463)
T PRK12416 152 LESFLGKEL------------VERQIAPVL--SGVYSGKLNE-------LTMA--STLPY-LLDYKNKYGSIIKGFEE-- 205 (463)
T ss_pred HHHhcCHHH------------HHHHHHHHh--cccccCCccc-------ccHH--HhhHH-HHHHHHhcCcHHHHHHH--
Confidence 432111100 000111110 0111111111 0000 00000 00000000000000000
Q ss_pred cccccccCCCCCccccccchHHHHHHHHhhhc---cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEc
Q 046008 1082 WNQDDVYGGFGGAHCMIKGGYSTVVEALGKEL---LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLIT 1158 (1624)
Q Consensus 1082 ~~~~~~y~g~~G~~~~VkGGm~sLveALAe~L---~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsA 1158 (1624)
............+++++|||++|+++|++.+ +|++|++|++|.+ .++++.|++.+|.++.||+||+|
T Consensus 206 -~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~~i~~~~~V~~I~~---------~~~~~~v~~~~g~~~~ad~VI~a 275 (463)
T PRK12416 206 -NKKQFQSAGNKKFVSFKGGLSTIIDRLEEVLTETVVKKGAVTTAVSK---------QGDRYEISFANHESIQADYVVLA 275 (463)
T ss_pred -hhhccCCCCCCceEeeCCCHHHHHHHHHHhcccccEEcCCEEEEEEE---------cCCEEEEEECCCCEEEeCEEEEC
Confidence 0000000011235678999999999999988 4999999999998 35578999889989999999999
Q ss_pred cChhhhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEeccc----cCCC
Q 046008 1159 VPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWNVR----KTVG 1234 (1624)
Q Consensus 1159 iP~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n~~----ap~G 1234 (1624)
+|+..+. .+.+.|.++ +.+.++.|.++.+|++.|+.++|......||+............+.|... ..++
T Consensus 276 ~p~~~~~--~ll~~~~l~----~~~~~~~~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~s~~~~~~~~~ 349 (463)
T PRK12416 276 APHDIAE--TLLQSNELN----EQFHTFKNSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWTSRKWKHTSGK 349 (463)
T ss_pred CCHHHHH--hhcCCcchh----HHHhcCCCCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEeecCCCCCcCCC
Confidence 9998875 455666665 56788899999999999998877644456777654332221222233322 1234
Q ss_pred CcEEEEEEe---CccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCC---Cchh
Q 046008 1235 APVLIALVV---GKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGAS---GEDY 1308 (1624)
Q Consensus 1235 ~~vLvayv~---G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~---~~~~ 1308 (1624)
..+|+.++. +..+..+..++++++++.++++|+++||.. +.|+.+.+++|.. ++....+|.. ....
T Consensus 350 ~~~l~~~~~~~~~~~~~~~~~~~dee~~~~~~~~L~~~lG~~--~~p~~~~v~~W~~------a~P~y~~~~~~~~~~~~ 421 (463)
T PRK12416 350 QKLLVRMFYKSTNPVYETIKNYSEEELVRVALYDIEKSLGIK--GEPEVVEVTNWKD------LMPKYHLEHNQAVQSLQ 421 (463)
T ss_pred CeEEEEEEeCCCCCCchhhhcCCHHHHHHHHHHHHHHHhCCC--CCceEEEEEEccc------cCCCcCcCHHHHHHHHH
Confidence 455555444 356667888999999999999999999854 4788899999974 2221122321 1122
Q ss_pred hhhCCccCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 046008 1309 DILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILT 1353 (1624)
Q Consensus 1309 d~L~tPV~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~ 1353 (1624)
+.+..+.++ |||||+++.. .+|+||+.||.+||++|++.++
T Consensus 422 ~~l~~~~~~-l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 462 (463)
T PRK12416 422 EKMMNLYPN-IYLAGASYYG---VGIGACIGNGKNTANEIIATLN 462 (463)
T ss_pred HHHHhhCCC-eEEecccccc---ccHHHHHHHHHHHHHHHHHHhh
Confidence 345555566 9999998653 3599999999999999998764
No 14
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=9.5e-33 Score=343.56 Aligned_cols=439 Identities=19% Similarity=0.222 Sum_probs=261.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHH
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQ-GFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSL 936 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~ 936 (1624)
+...++|+|||||++||+||++|+++ |++|+|||+++++||+++|... +|+.+|.|+|++...++. +..
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~-~g~~~d~G~~~~~~~~~~---------~~~ 78 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSE-DGFIWEEGPNSFQPSDPE---------LTS 78 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEecc-CCeEEecCCchhccCcHH---------HHH
Confidence 34567899999999999999999999 9999999999999999999987 589999999999864332 223
Q ss_pred HHHHhCCceeeec--CCCCeeeccCCccc--CcchHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhccHHHHHHHHHH
Q 046008 937 VCAQLGLELTVLN--SDCPLYDIVSGQKV--PANVDEALEAEFNSLLDDMVLLVAQK-----GEHAMKMSLEDGLEYALK 1007 (1624)
Q Consensus 937 LlkeLGLel~~l~--~~~~~yd~~~Gk~v--p~~l~~~l~~~~~slld~l~~~~~~~-----g~~a~~~sled~Le~~lk 1007 (1624)
++++ |+...... .....|.+.+|+.. |......+...+..+.+.+....... .......++++|+...+.
T Consensus 79 l~~~-gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~g 157 (496)
T PLN02576 79 AVDS-GLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRAGLGAFGWKRPPPPGREESVGEFVRRHLG 157 (496)
T ss_pred HHHc-CChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHHHHhHHHhhccCCCCCCCCCcHHHHHHHhcC
Confidence 4444 87654432 22334545566543 33222211111111122221111100 000123455555542221
Q ss_pred HHHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccc----ccccccc-
Q 046008 1008 RRRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLK----EVSLPFW- 1082 (1624)
Q Consensus 1008 ~~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~----~vSl~~~- 1082 (1624)
... ...+.+.|.. ++.+..+.. ++.. ..+ ..+..++-..+..+. .......
T Consensus 158 ~~~------------~~~~~~p~~~--~~~~~~~~~-------lS~~--~~~-~~~~~~e~~~gs~~~~~l~~~~~~~~~ 213 (496)
T PLN02576 158 DEV------------FERLIDPFVS--GVYAGDPSS-------LSMK--AAF-PKLWNLEKRGGSIIGGAIKAIQEAKKN 213 (496)
T ss_pred HHH------------HHHHHHHHhC--ceecCCHHH-------HhHH--HHh-HHHHHHHHhcCcHHHHHHHhhhhhccc
Confidence 110 0011111100 011111110 0000 000 000111000000000 0000000
Q ss_pred ----ccccccCC-CCCccccccchHHHHHHHHhhhcc---ccccceEEEEEecCCCCCCCCCCCcEEEE--eCCC-cEEE
Q 046008 1083 ----NQDDVYGG-FGGAHCMIKGGYSTVVEALGKELL---IHHNHVVTDISYSFKDSDLSDGQSRVKVS--TSNG-SEFS 1151 (1624)
Q Consensus 1083 ----~~~~~y~g-~~G~~~~VkGGm~sLveALAe~L~---IrLNt~VtrI~~~~~~~~~s~~~~~V~V~--TadG-eti~ 1151 (1624)
..+..... .+...+.++|||++|+++|++.+. |++|++|++|... .++.+.|+ +.+| +++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l~~~~i~l~~~V~~I~~~--------~~~~~~v~~~~~~g~~~~~ 285 (496)
T PLN02576 214 PKPEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRLGKDKVKLNWKVLSLSKN--------DDGGYSLTYDTPEGKVNVT 285 (496)
T ss_pred ccccccccccccccCCeeEeccchHHHHHHHHHHhhCcCcEEcCCEEEEEEEC--------CCCcEEEEEecCCCceeEE
Confidence 00000000 112346789999999999999884 9999999999984 22225444 3456 4799
Q ss_pred cCEEEEccChhhhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccC------CCccccccccccCCCCceeE
Q 046008 1152 GDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDD------TVDYFGATAKETDLRGRCFM 1225 (1624)
Q Consensus 1152 AD~VIsAiP~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~------~~~~fG~~~~~~~~rg~~~~ 1225 (1624)
||+||+|+|+.++... . +++++...+++.++.|.++.+|++.|+.++|.. ....||..............
T Consensus 286 ad~VI~a~P~~~l~~l--l--~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~ 361 (496)
T PLN02576 286 AKAVVMTAPLYVVSEM--L--RPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGT 361 (496)
T ss_pred eCEEEECCCHHHHHHH--h--cccCHHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEE
Confidence 9999999999988642 2 345667889999999999999999999999976 33455544322211111222
Q ss_pred Ee-----ccccCCCCcEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccC
Q 046008 1226 FW-----NVRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVA 1300 (1624)
Q Consensus 1226 ~~-----n~~ap~G~~vLvayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~ 1300 (1624)
+| +...+++..++++|+.+..+..+..++++++++.++++|++++|....+.|..+.+++|.. +|..+.
T Consensus 362 ~~~s~~~p~~~~~~~~~l~~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~------a~P~~~ 435 (496)
T PLN02576 362 IYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPK------AIPQYL 435 (496)
T ss_pred EeecCcCCCCCCCCCEEEEEEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCc------ccCCCC
Confidence 22 2233456667888888888888889999999999999999999965445677778899974 333333
Q ss_pred CCCCC---chhhhhCCcc-CCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 046008 1301 TGASG---EDYDILGRPV-ENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILT 1353 (1624)
Q Consensus 1301 pG~~~---~~~d~L~tPV-~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~ 1353 (1624)
+|... .....+.... +| |||||+++.. .+++|||.||.+||++|+..+.
T Consensus 436 ~g~~~~~~~~~~~l~~~~~~~-l~~aG~~~~g---~~i~~ai~sg~~aA~~i~~~~~ 488 (496)
T PLN02576 436 LGHLDVLEAAEKMEKDLGLPG-LFLGGNYRGG---VALGKCVESGYEAADLVISYLE 488 (496)
T ss_pred cCHHHHHHHHHHHHHhcCCCC-EEEeccccCC---ccHHHHHHHHHHHHHHHHHHHh
Confidence 44321 1112222221 35 9999999863 3799999999999999998875
No 15
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-32 Score=332.10 Aligned_cols=417 Identities=21% Similarity=0.245 Sum_probs=248.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHHHhC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCAQLG 942 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~LlkeLG 942 (1624)
+|+|||||++||+||++|+++|++|+|||+++++||+++++... |+++|.|+|++.+.++ .+..++++||
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~-g~~~d~g~~~~~~~~~---------~~~~l~~~lg 70 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFG-GLPIERFYHHIFKSDE---------ALLELLDELG 70 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccC-CcchhhhhhhhccccH---------HHHHHHHHcC
Confidence 69999999999999999999999999999999999999999875 8999999999987543 3456999999
Q ss_pred CceeeecCCCCeeeccCCcccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHhhccCCccccc
Q 046008 943 LELTVLNSDCPLYDIVSGQKVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMARLGRGREDAS 1022 (1624)
Q Consensus 943 Lel~~l~~~~~~yd~~~Gk~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~r~~~~~~~~~~~~ 1022 (1624)
+...............+|...+......+.. + ...++.+.+...+....... ........
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 130 (434)
T PRK07233 71 LEDKLRWRETKTGYYVDGKLYPLGTPLELLR-F------------------PHLSLIDKFRLGLLTLLARR-IKDWRALD 130 (434)
T ss_pred CCCceeeccCceEEEECCeEecCCCHHHHHc-C------------------CCCCHHHHHHhHHHHHhhhh-cccccccc
Confidence 8654433222221223444333211100000 0 00000000000000000000 00000000
Q ss_pred ccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccccccccccccccc------cCCCCCccc
Q 046008 1023 MHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDV------YGGFGGAHC 1096 (1624)
Q Consensus 1023 ~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~~~~------y~g~~G~~~ 1096 (1624)
...+.+ ++.+....+..+.++..++.. .++..+..+++........ +.......+
T Consensus 131 ~~s~~~----------------~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 191 (434)
T PRK07233 131 KVPAEE----------------WLRRWSGEGVYEVFWEPLLES---KFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLG 191 (434)
T ss_pred cccHHH----------------HHHHhcCHHHHHHHHHHHHhc---ccCCCccccCHHHHHHHHhhhhccccccCCceEe
Confidence 001111 122222222233333332211 1234444444422110000 000122356
Q ss_pred cccchHHHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhhhhhhcccC
Q 046008 1097 MIKGGYSTVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAESIMF 1171 (1624)
Q Consensus 1097 ~VkGGm~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~vLk~~~I~F 1171 (1624)
+++||++.|+++|++.+ +|++|++|++|... ++.+.+.+.+|.++.||+||+|+|+..+.. +
T Consensus 192 ~~~gG~~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~---------~~~~~~~~~~~~~~~ad~vI~a~p~~~~~~----l 258 (434)
T PRK07233 192 YLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVID---------GGGVTGVEVDGEEEDFDAVISTAPPPILAR----L 258 (434)
T ss_pred ccCCCHHHHHHHHHHHHHhcCceEEeCCCeeEEEEc---------CCceEEEEeCCceEECCEEEECCCHHHHHh----h
Confidence 78999999999999876 69999999999873 445665556778999999999999987753 2
Q ss_pred CCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeE--EeccccCCCCcEE--EEEEeCccc
Q 046008 1172 SPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFM--FWNVRKTVGAPVL--IALVVGKAA 1247 (1624)
Q Consensus 1172 ~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~--~~n~~ap~G~~vL--vayv~G~~A 1247 (1624)
.|.+|+...+++..+.|.+..++++.|+.++++. .+........+..+.++. ++....++|..++ ..|+.+..
T Consensus 259 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~- 335 (434)
T PRK07233 259 VPDLPADVLARLRRIDYQGVVCMVLKLRRPLTDY--YWLNINDPGAPFGGVIEHTNLVPPERYGGEHLVYLPKYLPGDH- 335 (434)
T ss_pred cCCCcHHHHhhhcccCccceEEEEEEecCCCCCC--ceeeecCCCCCcceEEEecccCCccccCCceEEEEeeecCCCC-
Confidence 3667777888899999999999999999886431 111111111111111111 1111222455443 23433332
Q ss_pred cccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhhhCCccCCeEEEecCCcc
Q 046008 1248 VDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAGEATC 1327 (1624)
Q Consensus 1248 ~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~tPV~grLyFAGEaTs 1327 (1624)
.+..++++++++.+++.|.++||......++...+.+| +|+.+.| .+|. ....+.+.+|++| |||||+++.
T Consensus 336 -~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~---~~a~~~~---~~g~-~~~~~~~~~~~~~-l~~aG~~~~ 406 (434)
T PRK07233 336 -PLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRA---PYAQPIY---EPGY-LDKIPPYDTPIEG-LYLAGMSQI 406 (434)
T ss_pred -hhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEe---ccccccc---cCch-hhcCCCcccCcCC-EEEeCCccc
Confidence 24467899999999999999998542233445444444 4555443 3442 2445567788877 999999655
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHc
Q 046008 1328 KEHPDTVGGAMLSGLREAVRIIDILT 1353 (1624)
Q Consensus 1328 ~~~~GtVEGAi~SGiRAA~~IL~~L~ 1353 (1624)
..+.++|+||+.||.+||++|+..++
T Consensus 407 ~~~~~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 407 YPEDRSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred CCccCchhHHHHHHHHHHHHHhhhhc
Confidence 55666899999999999999999886
No 16
>PLN02612 phytoene desaturase
Probab=100.00 E-value=5.6e-32 Score=341.45 Aligned_cols=441 Identities=17% Similarity=0.155 Sum_probs=251.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHH
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLV 937 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~L 937 (1624)
+...++|+|||||++||+||++|+++|++|+|||+++++||++.++...+|+.+|.|+|++.+.+++ +..+
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~---------~~~l 160 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPN---------VQNL 160 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCch---------HHHH
Confidence 4456899999999999999999999999999999999999999998754589999999999987654 3458
Q ss_pred HHHhCCceeeecCCCCe-eecc--CCcccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHhh-
Q 046008 938 CAQLGLELTVLNSDCPL-YDIV--SGQKVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMAR- 1013 (1624)
Q Consensus 938 lkeLGLel~~l~~~~~~-yd~~--~Gk~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~r~~~- 1013 (1624)
+++||+........... |... .+......+...+...+..++..+.. ....++.+.+...........
T Consensus 161 l~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~--------~~~ls~~~kl~~~~~~~~~~~~ 232 (567)
T PLN02612 161 FGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRN--------NEMLTWPEKIKFAIGLLPAIVG 232 (567)
T ss_pred HHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhc--------CccCCHHHHHHHHHhhhHHhcc
Confidence 99999965433222222 1111 11110000000000111111111000 000011111111110000000
Q ss_pred ccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHH-HHHHHHHHhhhhhcccccccccccccccc--cccC-
Q 046008 1014 LGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVER-RVMDWHFANLEYGCAALLKEVSLPFWNQD--DVYG- 1089 (1624)
Q Consensus 1014 ~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r-~lL~~~~a~ley~~ga~l~~vSl~~~~~~--~~y~- 1089 (1624)
............+.++ +.+...++... .++..++..+. +..+.++|+.+.... ....
T Consensus 233 ~~~~~~~~d~~Sv~e~----------------l~~~~~~~~~~~~~~~~l~~~~~---~~~p~~~S~~~~l~~l~~~l~~ 293 (567)
T PLN02612 233 GQAYVEAQDGLSVKEW----------------MRKQGVPDRVNDEVFIAMSKALN---FINPDELSMQCILIALNRFLQE 293 (567)
T ss_pred cchhhhhcCcCcHHHH----------------HHhcCCCHHHHHHHHHHHHHHhc---CCCHHHhhHHHHHHHHHHHHhc
Confidence 0000000111122222 22222333222 24443332221 123334444321110 0000
Q ss_pred CCCCccccccchH-HHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhh
Q 046008 1090 GFGGAHCMIKGGY-STVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGC 1163 (1624)
Q Consensus 1090 g~~G~~~~VkGGm-~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~v 1163 (1624)
..+....++.|+. ..|+++|++.| +|++|++|++|.++. ++..+.|++.+|+++.||+||+|+|+.+
T Consensus 294 ~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~-------~g~v~~v~~~~G~~~~ad~VI~a~p~~~ 366 (567)
T PLN02612 294 KHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELND-------DGTVKHFLLTNGSVVEGDVYVSATPVDI 366 (567)
T ss_pred cCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECC-------CCcEEEEEECCCcEEECCEEEECCCHHH
Confidence 0111223345554 56777776654 799999999999841 2223557788899999999999999988
Q ss_pred hhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEec----cccCCCCcEEE
Q 046008 1164 LKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN----VRKTVGAPVLI 1239 (1624)
Q Consensus 1164 Lk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n----~~ap~G~~vLv 1239 (1624)
++.... ....|....+.+..+.+.++.+|+|.|+++||... ..+-... .+... .+..+. ...+++..++.
T Consensus 367 l~~Ll~--~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~~~-~~~~~~~--~~~~~-~~~d~S~~~~~~~~~~~~ll~ 440 (567)
T PLN02612 367 LKLLLP--DQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTY-DHLLFSR--SPLLS-VYADMSTTCKEYYDPNKSMLE 440 (567)
T ss_pred HHHhCc--chhcCcHHHHHHHhcCCCCeEEEEEEECcccCCCC-CceeecC--CCCce-eehhhhhcchhhcCCCCeEEE
Confidence 764211 11122245566677889999999999999998642 1111111 11111 111010 11234454444
Q ss_pred EEEeCccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCC--ceEEEeecCCCCCCcccccccCCCCCCchhhhhCCccCC
Q 046008 1240 ALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDP--VASVVTDWGRDPFSYGAYSYVATGASGEDYDILGRPVEN 1317 (1624)
Q Consensus 1240 ayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdP--i~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~tPV~g 1317 (1624)
++.+ .+..|..++++++++.++++|.++||....+++ ..+....|...|++. |.+ .||.. ...+.+++|++|
T Consensus 441 -~~~~-~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~~~~~i~~~~~v~~P~a~--~~~-~pg~~-~~rp~~~tPi~~ 514 (567)
T PLN02612 441 -LVFA-PAEEWISRSDEDIIDATMKELAKLFPDEISADQSKAKILKYHVVKTPRSV--YKT-VPNCE-PCRPLQRSPIEG 514 (567)
T ss_pred -EEEE-cChhhhcCCHHHHHHHHHHHHHHHCCcccccccCCceEEEEEEeccCCce--EEe-CCCCc-ccCccccCccCC
Confidence 3333 567899999999999999999999997533332 223333444444432 433 23322 245667899987
Q ss_pred eEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcc
Q 046008 1318 CLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTT 1354 (1624)
Q Consensus 1318 rLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~~ 1354 (1624)
||||||+|...|+|+|+||+.||.+||++|+..++.
T Consensus 515 -l~lAGd~t~~~~~~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 515 -FYLAGDYTKQKYLASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred -EEEeecceeCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999998853
No 17
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=3.2e-32 Score=333.61 Aligned_cols=403 Identities=22% Similarity=0.281 Sum_probs=244.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHH
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCA 939 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~Llk 939 (1624)
++|+|||||+|||+||++|+++| ++|+|||+++++||+++|.... |+++|+|+|++.+.+.+ +..+++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~-g~~~d~G~~~~~~~~~~---------~~~l~~ 70 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKD-GFPIELGPESFLARKPS---------APALVK 70 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeC-CeEEecChHHhcCCcHH---------HHHHHH
Confidence 47999999999999999999988 8999999999999999999874 89999999988865433 456999
Q ss_pred HhCCceeeecC-CCCeeeccCCccc--CcchHHHHH--------HHHHHHHHHHHHHHHHh---hhhhhhccHHHHHHHH
Q 046008 940 QLGLELTVLNS-DCPLYDIVSGQKV--PANVDEALE--------AEFNSLLDDMVLLVAQK---GEHAMKMSLEDGLEYA 1005 (1624)
Q Consensus 940 eLGLel~~l~~-~~~~yd~~~Gk~v--p~~l~~~l~--------~~~~slld~l~~~~~~~---g~~a~~~sled~Le~~ 1005 (1624)
+||+....+.. ....+.+..|... |......+. ..+....+.+....... .......++.+++...
T Consensus 71 ~lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~ 150 (451)
T PRK11883 71 ELGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRRR 150 (451)
T ss_pred HcCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHHh
Confidence 99997554432 1222333455432 221100000 00000000000000000 0001122333333211
Q ss_pred HHHHHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccccccccccc--
Q 046008 1006 LKRRRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWN-- 1083 (1624)
Q Consensus 1006 lk~~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~-- 1083 (1624)
+. ....+.++..++. ..++..+..+++....
T Consensus 151 ~~--------------------------------------------~~~~~~~~~~~~~---~~~~~~~~~~s~~~~~~~ 183 (451)
T PRK11883 151 FG--------------------------------------------DEVVENLIEPLLS---GIYAGDIDTLSLRATFPQ 183 (451)
T ss_pred cc--------------------------------------------HHHHHHHHHHhhc---eeecCChHHccHHHhHHH
Confidence 10 0011111111100 0111122222211000
Q ss_pred -----------------cccccC-CCCCccccccchHHHHHHHHhhhc---cccccceEEEEEecCCCCCCCCCCCcEEE
Q 046008 1084 -----------------QDDVYG-GFGGAHCMIKGGYSTVVEALGKEL---LIHHNHVVTDISYSFKDSDLSDGQSRVKV 1142 (1624)
Q Consensus 1084 -----------------~~~~y~-g~~G~~~~VkGGm~sLveALAe~L---~IrLNt~VtrI~~~~~~~~~s~~~~~V~V 1142 (1624)
...... ..+..+++++|||+.|+++|++.+ +|++|++|++|.. .+++|.|
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~~~i~~~~~V~~i~~---------~~~~~~v 254 (451)
T PRK11883 184 LAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQSLIEALEEKLPAGTIHKGTPVTKIDK---------SGDGYEI 254 (451)
T ss_pred HHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHHHHHHHHHHhCcCCeEEeCCEEEEEEE---------cCCeEEE
Confidence 000000 012345678999999999999988 4999999999998 3557889
Q ss_pred EeCCCcEEEcCEEEEccChhhhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCc
Q 046008 1143 STSNGSEFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGR 1222 (1624)
Q Consensus 1143 ~TadGeti~AD~VIsAiP~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~ 1222 (1624)
++.+|+++.||+||+|+|+.++... .+. +...+++.++.|+++.+|++.|+.+|+.. ...+|+..........
T Consensus 255 ~~~~g~~~~~d~vI~a~p~~~~~~l--~~~----~~~~~~~~~~~~~~~~~v~l~~~~~~~~~-~~~~~~~~~~~~~~~~ 327 (451)
T PRK11883 255 VLSNGGEIEADAVIVAVPHPVLPSL--FVA----PPAFALFKTIPSTSVATVALAFPESATNL-PDGTGFLVARNSDYTI 327 (451)
T ss_pred EECCCCEEEcCEEEECCCHHHHHHh--ccC----hhHHHHHhCCCCCceEEEEEEeccccCCC-CCceEEEecCCCCCcE
Confidence 8889999999999999999988743 222 34568899999999999999999986322 2233332211111112
Q ss_pred eeEEecc-----ccCCCCcEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCccccc
Q 046008 1223 CFMFWNV-----RKTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYS 1297 (1624)
Q Consensus 1223 ~~~~~n~-----~ap~G~~vLvayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs 1297 (1624)
..+.|+. ..+.|..++..++.+........++++++++.++++|+++||.. .+|..+.+++|.. +|.
T Consensus 328 ~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~--~~~~~~~~~rw~~------a~p 399 (451)
T PRK11883 328 TACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLSKVMGIT--GDPEFTIVQRWKE------AMP 399 (451)
T ss_pred EEEEeEcCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHHHHhCCC--CCceEEEEeecCc------cCC
Confidence 2233332 23344444444443332333467899999999999999999853 3677889999984 455
Q ss_pred ccCCCCCCchhhhhCCc---cCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHH
Q 046008 1298 YVATGASGEDYDILGRP---VENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIID 1350 (1624)
Q Consensus 1298 ~~~pG~~~~~~d~L~tP---V~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~ 1350 (1624)
.+.+|.. ...+.++.+ +++ |||||+++. ++.|++|+.||.+||++|++
T Consensus 400 ~~~~~~~-~~~~~l~~~l~~~~~-l~~aG~~~~---g~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 400 QYGVGHI-ERVAELRAGLPHYPG-LYVAGASFE---GVGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred CCCccHH-HHHHHHHHhhhhCCC-EEEECcccC---CccHHHHHHHHHHHHHHHHh
Confidence 5555542 222223333 445 999999974 34699999999999999975
No 18
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=9.7e-32 Score=331.05 Aligned_cols=421 Identities=18% Similarity=0.193 Sum_probs=246.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHHHhC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCAQLG 942 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~LlkeLG 942 (1624)
+|+|||||++||+||++|+++|++|+|||+++++||++++.....|+++|.|+|++.+.+++ +..++++||
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~---------~~~l~~~lg 71 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPN---------MLQLLKELN 71 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCch---------HHHHHHHcC
Confidence 59999999999999999999999999999999999999997543589999999999987654 345889999
Q ss_pred CceeeecCCC-Ceeecc--CCcc-------cCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHH-
Q 046008 943 LELTVLNSDC-PLYDIV--SGQK-------VPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRM- 1011 (1624)
Q Consensus 943 Lel~~l~~~~-~~yd~~--~Gk~-------vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~r~- 1011 (1624)
+......... ..|... .+.. +|..+. .++..+.. ....++.+.+.........
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 135 (453)
T TIGR02731 72 IEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFN--------GVAAILRN--------NDMLTWPEKIKFAIGLLPAI 135 (453)
T ss_pred CccceeecCCceEEecCCCCcceeeccCCCCCCCHH--------HHHHHhcC--------cCCCCHHHHHHHHHHhHHHH
Confidence 8654332221 122211 1111 111110 00000000 0001111111111100000
Q ss_pred hhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHH-HHHHHHHHhhhhhccccccccccccccccc-c-c
Q 046008 1012 ARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVER-RVMDWHFANLEYGCAALLKEVSLPFWNQDD-V-Y 1088 (1624)
Q Consensus 1012 ~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r-~lL~~~~a~ley~~ga~l~~vSl~~~~~~~-~-y 1088 (1624)
..............+.+ ++.+...++... .++.+++..+ ++..+..+|+.++.... . +
T Consensus 136 ~~~~~~~~~~~~~s~~~----------------~l~~~~~~~~~~~~~~~pl~~~~---~~~~p~~~S~~~~~~~l~~~~ 196 (453)
T TIGR02731 136 VRGQKYVEEQDKYTVTE----------------WLRKQGVPERVNDEVFIAMSKAL---NFINPDELSMTVVLTALNRFL 196 (453)
T ss_pred hcCccchhhhccCCHHH----------------HHHHcCCCHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHH
Confidence 00000000011111222 222222333322 2333333221 12334444443211000 0 0
Q ss_pred -CCCCCccccccch-HHHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCc-----EEEcCEEE
Q 046008 1089 -GGFGGAHCMIKGG-YSTVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGS-----EFSGDAVL 1156 (1624)
Q Consensus 1089 -~g~~G~~~~VkGG-m~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGe-----ti~AD~VI 1156 (1624)
...+....+..|| ++.++++|++.+ +|++|++|++|.... ++..+.|++.+|+ ++.||+||
T Consensus 197 ~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~-------~~~v~~v~~~~~~~~~~~~~~a~~VI 269 (453)
T TIGR02731 197 QERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNE-------DGSVKHFVLADGEGQRRFEVTADAYV 269 (453)
T ss_pred hcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECC-------CCCEEEEEEecCCCCceeEEECCEEE
Confidence 0011111122333 355666665544 799999999998631 2223457776665 79999999
Q ss_pred EccChhhhhhhcccCCCCCc-HHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCcee----EEecccc
Q 046008 1157 ITVPLGCLKAESIMFSPPLP-QWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCF----MFWNVRK 1231 (1624)
Q Consensus 1157 sAiP~~vLk~~~I~F~P~LP-~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~----~~~n~~a 1231 (1624)
+|+|+..+.. + ..+.++ ....+.+..+.++++.+|++.|++++|......+ .. .+.....+ ..++. .
T Consensus 270 ~a~p~~~~~~--l-L~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~--~~--~~~~~~~~~~s~~~~~~-~ 341 (453)
T TIGR02731 270 SAMPVDIFKL--L-LPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLTTVDHLLF--SR--SPLLSVYADMSETCKEY-A 341 (453)
T ss_pred EcCCHHHHHh--h-CchhhhcCHHHHHhhcCCCCcEEEEEEEEccccCCCCceee--eC--CCcceeecchhhhChhh-c
Confidence 9999987643 2 111222 3455667778899999999999999885431112 11 11111000 01111 2
Q ss_pred CCCCcEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHhCCCC-CCCCceEEEeecCCCCCCcccccccCCCCCCchhhh
Q 046008 1232 TVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAAS-VPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDI 1310 (1624)
Q Consensus 1232 p~G~~vLvayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~-vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~ 1310 (1624)
+++. .++.++.+. +..+..++++++++.++++|.++||... ...+..++.++|..+||+. | ..+|| .....+.
T Consensus 342 ~~~~-~l~~~~~~~-~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~p~a~--~-~~~pg-~~~~~~~ 415 (453)
T TIGR02731 342 DPDK-SMLELVFAP-AADWIGRSDEEIIDATMAELAKLFPNHIKADSPAKILKYKVVKTPRSV--Y-KTTPG-RQQYRPH 415 (453)
T ss_pred CCCC-eEEEEEecC-hhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCceEEEEEEEECCCce--e-ccCCC-ChhhCcc
Confidence 2344 444444443 3567789999999999999999998631 1256778889999999984 5 34567 4567788
Q ss_pred hCCccCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHH
Q 046008 1311 LGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRII 1349 (1624)
Q Consensus 1311 L~tPV~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL 1349 (1624)
+++|++| |||||++|+..|+|+|||||.||.+||++|+
T Consensus 416 ~~~p~~~-l~~AG~~~a~~~~g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 416 QKTPIPN-FFLAGDYTKQKYLASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred ccCccCC-EEEeehhccCcccccHHHHHHHHHHHHHHhC
Confidence 9999987 9999999999999999999999999999874
No 19
>PRK07208 hypothetical protein; Provisional
Probab=99.97 E-value=8.6e-29 Score=306.93 Aligned_cols=414 Identities=20% Similarity=0.147 Sum_probs=240.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHH
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCA 939 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~Llk 939 (1624)
..++|+|||||++||+||++|+++|++|+|||+++++||++++... .|+++|+|+|++...+.. +..+++
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~-~g~~~d~G~h~~~~~~~~---------~~~l~~ 72 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTY-KGNRFDIGGHRFFSKSPE---------VMDLWN 72 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeecc-CCceEccCCceeccCCHH---------HHHHHH
Confidence 4578999999999999999999999999999999999999999887 489999999999875443 456889
Q ss_pred HhCCceeeecCCCCeeeccCCcc--cCcchHHHHHHH-HHHHHHHHHHHHHH-hhhhhhhccHHHHHHHHHHHHHHhhcc
Q 046008 940 QLGLELTVLNSDCPLYDIVSGQK--VPANVDEALEAE-FNSLLDDMVLLVAQ-KGEHAMKMSLEDGLEYALKRRRMARLG 1015 (1624)
Q Consensus 940 eLGLel~~l~~~~~~yd~~~Gk~--vp~~l~~~l~~~-~~slld~l~~~~~~-~g~~a~~~sled~Le~~lk~~r~~~~~ 1015 (1624)
+|++...........+.+..|.. +|......+... +...+..+...+.. ........++++|+...+.
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~g-------- 144 (479)
T PRK07208 73 EILPDDDFLLRPRLSRIYYRGKFFDYPLKAFDALKNLGLWRTAKCGASYLKARLRPRKEEDSFEDWVINRFG-------- 144 (479)
T ss_pred HhcCCCccccccccceEEECCEEecCCcchhHHHHhCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhC--------
Confidence 99863322222222223335543 332211111000 00000000000000 0000112444444432211
Q ss_pred CCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccccccccccc------------
Q 046008 1016 RGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWN------------ 1083 (1624)
Q Consensus 1016 ~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~------------ 1083 (1624)
.+....++..++.. .++..+..+++.+..
T Consensus 145 ------------------------------------~~~~~~~~~p~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~ 185 (479)
T PRK07208 145 ------------------------------------RRLYSTFFKGYTEK---VWGVPCDEISADWAAQRIKGLSLGKAI 185 (479)
T ss_pred ------------------------------------HHHHHHHHHHhhhh---hhCCChHHCCChHHhCcccCCCHHHHH
Confidence 11111111111110 011222222221100
Q ss_pred -----c--------ccccCCCCCccccccchHHHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEE-EEe
Q 046008 1084 -----Q--------DDVYGGFGGAHCMIKGGYSTVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVK-VST 1144 (1624)
Q Consensus 1084 -----~--------~~~y~g~~G~~~~VkGGm~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~-V~T 1144 (1624)
. ..........+.+++||++.|+++|++.+ +|++|++|++|..+ +++.+. |+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~--------~~~~v~~~~~ 257 (479)
T PRK07208 186 RNALRRSLGLKRRNKEVETSLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHD--------GDGRIAVVVV 257 (479)
T ss_pred HHHhhhcccccccCCCccccceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEc--------CCcEEEEEEE
Confidence 0 00000111245668999999999998866 69999999999984 223233 332
Q ss_pred --CCCc--EEEcCEEEEccChhhhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCC
Q 046008 1145 --SNGS--EFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLR 1220 (1624)
Q Consensus 1145 --adGe--ti~AD~VIsAiP~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~r 1220 (1624)
.+|. ++.||+||+|+|+..|... +.|++|....+++..+.|.++.+|++.|+++.+....+.|.........+
T Consensus 258 ~~~~g~~~~~~ad~VI~a~p~~~l~~~---l~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~r 334 (479)
T PRK07208 258 NDTDGTEETVTADQVISSMPLRELVAA---LDPPPPPEVRAAAAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKVGR 334 (479)
T ss_pred EcCCCCEEEEEcCEEEECCCHHHHHHh---cCCCCCHHHHHHHhCCCcceeEEEEEEecCCCCCCCceEEecCCCCccce
Confidence 2453 6899999999999877632 34678888889999999999999999999876543322111111100011
Q ss_pred CceeEEec-cccCCCCc-EEE-EEEeCccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCccccc
Q 046008 1221 GRCFMFWN-VRKTVGAP-VLI-ALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYS 1297 (1624)
Q Consensus 1221 g~~~~~~n-~~ap~G~~-vLv-ayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs 1297 (1624)
...+..|+ ...|+|.. .+. .++.... .....++++++++.++++|.+++. ..-..+..+.+.+|. .+|.
T Consensus 335 ~~~~~~~~~~~~p~g~~~~l~~~~~~~~~-~~~~~~~deel~~~~~~~L~~l~~-~~~~~~~~~~v~r~~------~a~P 406 (479)
T PRK07208 335 LQNFNNWSPYLVPDGRDTWLGLEYFCFEG-DDLWNMSDEDLIALAIQELARLGL-IRPADVEDGFVVRVP------KAYP 406 (479)
T ss_pred ecccccCCcccCCCCCceEEEEEEEccCC-CccccCCHHHHHHHHHHHHHHcCC-CChhheeEEEEEEec------Cccc
Confidence 11122222 22345553 222 2332222 234478999999999999999733 223346677778875 2333
Q ss_pred ccCCCCCCch--hhhhCCccCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHH
Q 046008 1298 YVATGASGED--YDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDI 1351 (1624)
Q Consensus 1298 ~~~pG~~~~~--~d~L~tPV~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~ 1351 (1624)
.+.+|..... ...+.++.+| |||||++....| .+|++|+.||++||++|++.
T Consensus 407 ~y~~~~~~~~~~~~~~~~~~~~-l~laGr~~~~~~-~~~d~a~~sg~~~a~~i~~~ 460 (479)
T PRK07208 407 VYDGTYERNVEIIRDLLDHFPN-LHLVGRNGMHRY-NNQDHSMLTAMLAVENIIAG 460 (479)
T ss_pred CCCchHHHHHHHHHHHHHhcCC-ceeecccccccc-CChhHHHHHHHHHHHHHhcC
Confidence 3333332111 1113456667 999999876655 48999999999999988766
No 20
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.97 E-value=2.6e-28 Score=295.21 Aligned_cols=397 Identities=19% Similarity=0.194 Sum_probs=234.9
Q ss_pred HHHHHHHHCCCcEEEEcccccCCCcccccccC-CCccccccceeecccccchhhhccCCcHHHHHHHhCCceeeec-CCC
Q 046008 875 TAARHLQRQGFSVTVLEARNRIGGRVYTDRTS-LSVPVDLGASIITGVEADVATERRADPSSLVCAQLGLELTVLN-SDC 952 (1624)
Q Consensus 875 ~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~-~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~LlkeLGLel~~l~-~~~ 952 (1624)
+||++|+++|++|+|||+++++||+++|+... .++++|+|+|++.+.+++ +..++++||++..... ...
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~---------~~~l~~~lgl~~~~~~~~~~ 71 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTN---------LLALLRRIGAEPRLQGPRLP 71 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHH---------HHHHHHHhCCchhhhcccCC
Confidence 58999999999999999999999999999864 134599999999876544 3468999999765431 111
Q ss_pred CeeeccCCc-------ccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHhhccCCcccccccc
Q 046008 953 PLYDIVSGQ-------KVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMARLGRGREDASMHN 1025 (1624)
Q Consensus 953 ~~yd~~~Gk-------~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~r~~~~~~~~~~~~~~~ 1025 (1624)
..+....+. .++.... . ...+ .. ....+..+..........+.... ........
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~p~~--~---~~~~-~~-----------~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~s 132 (419)
T TIGR03467 72 LPFYDPGGRLSRLRLSRLPAPLH--L---ARGL-LR-----------APGLSWADKLALARALLALRRTR--FRALDDTT 132 (419)
T ss_pred cceecCCCCceeecCCCCCCCHH--H---HHHH-hc-----------CCCCCHHHHHHHHHHHHHHHhcC--ccccCCCC
Confidence 111111111 1111100 0 0000 00 00011111111000000000000 00000111
Q ss_pred hhhHhhcccCCCCCCCCcccchhccCCHHHHH-HHHHHHHhhhhhccccccccccccccccc--ccC--CCCCccccccc
Q 046008 1026 SMDVYSKTSSVDSRVPDKDCSREDILSPVERR-VMDWHFANLEYGCAALLKEVSLPFWNQDD--VYG--GFGGAHCMIKG 1100 (1624)
Q Consensus 1026 a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~-lL~~~~a~ley~~ga~l~~vSl~~~~~~~--~y~--g~~G~~~~VkG 1100 (1624)
+.+ ++.+...++...+ ++++++.. .++..++.+++.++.... .+. ......++++|
T Consensus 133 ~~~----------------~l~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g 193 (419)
T TIGR03467 133 VGD----------------WLQAAGQSERLIERLWEPLLLS---ALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRV 193 (419)
T ss_pred HHH----------------HHHHcCCCHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCC
Confidence 111 2222333433333 33332221 133455555554321110 010 11224677899
Q ss_pred hHHHHHHH-Hhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEEe-CCCcEEEcCEEEEccChhhhhhhcccCCC
Q 046008 1101 GYSTVVEA-LGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVST-SNGSEFSGDAVLITVPLGCLKAESIMFSP 1173 (1624)
Q Consensus 1101 Gm~sLveA-LAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~T-adGeti~AD~VIsAiP~~vLk~~~I~F~P 1173 (1624)
|++.++.. |++.| +|++|++|++|.+. +++|.++. .+|+++.||+||+|+|+.++.. + .|
T Consensus 194 G~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~---------~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~--l--l~ 260 (419)
T TIGR03467 194 PLSELFPEPARRWLDSRGGEVRLGTRVRSIEAN---------AGGIRALVLSGGETLPADAVVLAVPPRHAAS--L--LP 260 (419)
T ss_pred CHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEc---------CCcceEEEecCCccccCCEEEEcCCHHHHHH--h--CC
Confidence 99887644 76544 79999999999983 44454432 4678899999999999998864 2 12
Q ss_pred CCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEeccccCCCCcEEEEEEeCccccccCCC
Q 046008 1174 PLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKTVGAPVLIALVVGKAAVDGQNV 1253 (1624)
Q Consensus 1174 ~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n~~ap~G~~vLvayv~G~~A~~~e~l 1253 (1624)
. +.+.+++.++.|+++.+|+|.|+.+||.+. .++|.... ...+.+.....++...++..++.+ +..+..+
T Consensus 261 ~--~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 330 (419)
T TIGR03467 261 G--EDLGALLTALGYSPITTVHLRLDRAVRLPA-PMVGLVGG-----LAQWLFDRGQLAGEPGYLAVVISA--ARDLVDL 330 (419)
T ss_pred C--chHHHHHhhcCCcceEEEEEEeCCCcCCCC-CeeeecCC-----ceeEEEECCcCCCCCCEEEEEEec--chhhccC
Confidence 2 256788999999999999999999998543 34444321 112222222222223345444433 4567788
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhhhCCccCCeEEEecCCccCCCCCc
Q 046008 1254 SPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAGEATCKEHPDT 1333 (1624)
Q Consensus 1254 SdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~tPV~grLyFAGEaTs~~~~Gt 1333 (1624)
+++++++.++++|.++||....+.|....+.+|... .|.+ .+|.. ...+.+.+|+++ |||||++++.+++++
T Consensus 331 ~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~g~~-~~~~~~~~~~~~-l~~aGd~~~~~~~~~ 402 (419)
T TIGR03467 331 PREELADRIVAELRRAFPRVAGAKPLWARVIKEKRA-----TFAA-TPGLN-RLRPGARTPWPN-LFLAGDWTATGWPAT 402 (419)
T ss_pred CHHHHHHHHHHHHHHhcCccccCCccceEEEEccCC-----cccc-CCccc-ccCCCCCCCcCC-EEEecccccCCCcch
Confidence 999999999999999999653345666677788643 3332 24432 345556788877 999999999988899
Q ss_pred HHHHHHHHHHHHHHHH
Q 046008 1334 VGGAMLSGLREAVRII 1349 (1624)
Q Consensus 1334 VEGAi~SGiRAA~~IL 1349 (1624)
||||+.||.+||++|+
T Consensus 403 ~egA~~SG~~aA~~i~ 418 (419)
T TIGR03467 403 MEGAVRSGYQAAEAVL 418 (419)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999886
No 21
>PLN02487 zeta-carotene desaturase
Probab=99.97 E-value=2.1e-28 Score=306.99 Aligned_cols=464 Identities=18% Similarity=0.147 Sum_probs=271.0
Q ss_pred cccchhhhhhhhhcCCCCccccCCC---CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccc
Q 046008 835 SESERVQSASCDDAGENHYLRCDID---VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPV 911 (1624)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~ 911 (1624)
..++|+++|.-.+....+.++.+.. .+++|+|||||++||+||++|+++|++|+|||+++++||+++++....|+++
T Consensus 46 ~~l~r~~~d~~~~~~~~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~ 125 (569)
T PLN02487 46 SSLDSNVSDMSVNAPKGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHI 125 (569)
T ss_pred HHHHHHhhhhhccccccccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEE
Confidence 3589999988666643333332222 3469999999999999999999999999999999999999999864358999
Q ss_pred cccceeecccccchhhhccCCcHHHHHHHhCCceeeecCCC-CeeeccCCcc--cC--cchHHHHHHHHHHHHHHHHHHH
Q 046008 912 DLGASIITGVEADVATERRADPSSLVCAQLGLELTVLNSDC-PLYDIVSGQK--VP--ANVDEALEAEFNSLLDDMVLLV 986 (1624)
Q Consensus 912 d~Ga~~I~g~~~~v~~~~~~nPl~~LlkeLGLel~~l~~~~-~~yd~~~Gk~--vp--~~l~~~l~~~~~slld~l~~~~ 986 (1624)
|+|.|++.+.+++ +..++++||+......... ..|...+|.. ++ ..+...+ ..+..++
T Consensus 126 e~G~h~~~~~~~~---------~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl-~~~~~~l------- 188 (569)
T PLN02487 126 EMGLHVFFGCYNN---------LFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPL-HGIKAFL------- 188 (569)
T ss_pred ecceeEecCCcHH---------HHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchh-hhHHHHH-------
Confidence 9999999987654 4458999999765443222 2232222321 11 0111100 0000000
Q ss_pred HHhhhhhhhccHHHHHHHHHHH--HHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCH-HHHHHHHHHH
Q 046008 987 AQKGEHAMKMSLEDGLEYALKR--RRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSP-VERRVMDWHF 1063 (1624)
Q Consensus 987 ~~~g~~a~~~sled~Le~~lk~--~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp-~~r~lL~~~~ 1063 (1624)
.....++.+-+...+.. .+..... .+ .......+.. .......+++.+...++ ..+++++.++
T Consensus 189 -----~~~~Ls~~dklr~~~~l~~~~~~~al--~~---~~~~~~~~~~----~d~~sv~~~l~r~~g~~~~~~~l~dPll 254 (569)
T PLN02487 189 -----TTNQLEPYDKARNALALATSPVVRAL--VD---PDGAMRDIRD----LDDISFSDWFTSHGGTRMSIKRMWDPIA 254 (569)
T ss_pred -----cCCCCCHHHHHhhcccccccchhhhc--cC---cccccccccc----ccCCcHHHHHHHhCCCHHHHHHHHHHHH
Confidence 00011111111100000 0000000 00 0000000000 00011112344444555 4555666654
Q ss_pred Hhhhhhcccccccccccccccc-ccc--CCCCCccccccchHHH-HHHHHhhhc-----cccccceEEEEEecCCCCCCC
Q 046008 1064 ANLEYGCAALLKEVSLPFWNQD-DVY--GGFGGAHCMIKGGYST-VVEALGKEL-----LIHHNHVVTDISYSFKDSDLS 1134 (1624)
Q Consensus 1064 a~ley~~ga~l~~vSl~~~~~~-~~y--~g~~G~~~~VkGGm~s-LveALAe~L-----~IrLNt~VtrI~~~~~~~~~s 1134 (1624)
... .+.+++.+|+...... ..+ ....+..++++||++. |++.+++.| +|+++++|.+|.++..+
T Consensus 255 ~~~---~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~---- 327 (569)
T PLN02487 255 YAL---GFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSP---- 327 (569)
T ss_pred HHh---hCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCC----
Confidence 332 3356666666432211 111 1112346778999995 999998877 79999999999985210
Q ss_pred CCC--CcEEEEe---CCCcEEEcCEEEEccChhhhhhhcccCCCCCcH--HHHHHHHhcCCccEEEEEEEeCCccccCCC
Q 046008 1135 DGQ--SRVKVST---SNGSEFSGDAVLITVPLGCLKAESIMFSPPLPQ--WKYSAIQRLGFGVLNKVVLEFAEVFWDDTV 1207 (1624)
Q Consensus 1135 ~~~--~~V~V~T---adGeti~AD~VIsAiP~~vLk~~~I~F~P~LP~--~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~ 1207 (1624)
++ ..+.|++ .+++++.||+||+|+|+..++.. .|..+. ...+.+..+.+.++..|+|.|++++-....
T Consensus 328 -~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~L----lp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~ 402 (569)
T PLN02487 328 -DGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRL----LPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQD 402 (569)
T ss_pred -CCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHh----CCchhhccHHHhHHhcCCCeeEEEEEEEeccccccccc
Confidence 11 1244555 34567999999999999977532 233321 236678888889999999999975432110
Q ss_pred --------ccccccc--cccCCCCceeEEecc----c----cCCCCcEEEEEEeCccccccCCCCHHHHHHHHHHHHHHH
Q 046008 1208 --------DYFGATA--KETDLRGRCFMFWNV----R----KTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQI 1269 (1624)
Q Consensus 1208 --------~~fG~~~--~~~~~rg~~~~~~n~----~----ap~G~~vLvayv~G~~A~~~e~lSdEElie~aL~~L~kI 1269 (1624)
...|+.. ........+ +.+. . ......+|.+++.+ +..+..++++++++.++++|+++
T Consensus 403 ~~~~r~l~~~~g~~~~~~~~~~~~~f--~~di~l~~~~~~~~~~~g~~l~~vis~--a~~~~~~~~~ei~~~~~~~L~~~ 478 (569)
T PLN02487 403 LELSRQLRRAAGLDNLLYSADADFSC--FADLALTSPEDYYKEGEGSLIQAVLTP--GDPYMPLSNDKIVEKVHKQVLEL 478 (569)
T ss_pred ccccccccccccccccccccCCCcce--EeeeecCCHHHHcccCCceEEEEEEcC--CccccCCCHHHHHHHHHHHHHHh
Confidence 1222221 000001111 1110 0 11122455555543 45678899999999999999999
Q ss_pred hCCCCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhhhCCccCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHH
Q 046008 1270 FGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRII 1349 (1624)
Q Consensus 1270 fG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~tPV~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL 1349 (1624)
||...-..+..+.+.+.... .|. ..||.. ..++..++|++| ||+|||||...|+++||||+.||.+||+.|+
T Consensus 479 ~p~~~~~~v~~~~vv~~~~a-----t~~-~~pg~~-~~RP~~~T~~~n-l~LAGD~t~~~yPat~EgAv~SG~~AA~~i~ 550 (569)
T PLN02487 479 FPSSRGLEVTWSSVVKIGQS-----LYR-EAPGMD-PFRPDQKTPISN-FFLAGSYTKQDYIDSMEGATLSGRQAAAYIC 550 (569)
T ss_pred CcccccCceEEEEEEEccCc-----eec-cCCCcc-ccCCCCCCCCCC-EEEeCcccccCCcchHHHHHHHHHHHHHHHH
Confidence 98742223445455555543 332 234432 344678899998 9999999999999999999999999999998
Q ss_pred HHHc
Q 046008 1350 DILT 1353 (1624)
Q Consensus 1350 ~~L~ 1353 (1624)
+...
T Consensus 551 ~~~~ 554 (569)
T PLN02487 551 EAGE 554 (569)
T ss_pred HHhh
Confidence 7764
No 22
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.96 E-value=1.7e-27 Score=296.71 Aligned_cols=446 Identities=19% Similarity=0.156 Sum_probs=242.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHHHh
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCAQL 941 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~LlkeL 941 (1624)
+||+|||||++||+||.+|+++|++|+|||+++++||+++++.. .|+.||+|+||+.+.... .++..++++|
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~-~G~~fD~G~~~~~~~~~~-------~~~~~~~~~l 73 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRR-RGFTFDVGATQVAGLEPG-------GIHARIFREL 73 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceecc-CCEEEeecceEEEecCcC-------CHHHHHHHHc
Confidence 68999999999999999999999999999999999999999998 599999999999876433 3456688999
Q ss_pred CCceee-ecCCCC-eeeccCC-ccc--CcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHhhccC
Q 046008 942 GLELTV-LNSDCP-LYDIVSG-QKV--PANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMARLGR 1016 (1624)
Q Consensus 942 GLel~~-l~~~~~-~yd~~~G-k~v--p~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~r~~~~~~ 1016 (1624)
|+.... ...+.. .+.+.+| ..+ +.+.... ...+...+..- .. +...+........ ......+
T Consensus 74 g~~~~~~~~~d~~~~~~~~dg~~~~~~~~d~~~~-~~~l~~~~p~~--------~~-~~~~~~~~~~~~~---~~~~~~~ 140 (492)
T TIGR02733 74 GIPLPEAKILDPACAVDLPDGSEPIPLWHDPDRW-QKERERQFPGS--------ER-FWQLCSQLHQSNW---RFAGRDP 140 (492)
T ss_pred CCCCcccccCCCCcEEEECCCceEeeeecCHHHH-HHHHHHHCCCh--------HH-HHHHHHHHHHHHH---HHhhcCC
Confidence 987432 112211 1222233 222 1221111 11111110000 00 0000000000000 0000000
Q ss_pred CcccccccchhhHhhccc-----C-CCCCCCCcccchhc--cCCHHHHHHHHHHHHhhhhhccccccccccccccccccc
Q 046008 1017 GREDASMHNSMDVYSKTS-----S-VDSRVPDKDCSRED--ILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVY 1088 (1624)
Q Consensus 1017 ~~~~~~~~~a~d~fs~~~-----~-i~~~~p~~d~l~e~--~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~~~~y 1088 (1624)
.............+.... . .....+..+++... +.++..+.+|.+.+.. | .+..+...++.+......+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 217 (492)
T TIGR02733 141 VLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKL--Y-SQEDADETAALYGATVLQM 217 (492)
T ss_pred CCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhh--h-ccCChhhhhHHHHHHHhhc
Confidence 000000000000000000 0 00001111233332 4577788888765421 2 2333434443331100011
Q ss_pred CCCCCccccccchHHHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEEeCCC-----cEEEcCEEEEc
Q 046008 1089 GGFGGAHCMIKGGYSTVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNG-----SEFSGDAVLIT 1158 (1624)
Q Consensus 1089 ~g~~G~~~~VkGGm~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadG-----eti~AD~VIsA 1158 (1624)
....++.++++||+++|+++|++.+ +|++|++|++|..+ ++....|.+.+| +++.||+||+|
T Consensus 218 ~~~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~--------~~~~~gv~~~~~~~~~~~~~~ad~VI~~ 289 (492)
T TIGR02733 218 AQAPHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK--------GGRAGWVVVVDSRKQEDLNVKADDVVAN 289 (492)
T ss_pred cccCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe--------CCeEEEEEEecCCCCceEEEECCEEEEC
Confidence 1122334669999999999999877 69999999999984 222233444443 68999999999
Q ss_pred cChhhhhhhcccCCCCCcHHHHHHHHhcCCcc-EEEEEEEeCCccccCC-CccccccccccCCCCceeEEec----cccC
Q 046008 1159 VPLGCLKAESIMFSPPLPQWKYSAIQRLGFGV-LNKVVLEFAEVFWDDT-VDYFGATAKETDLRGRCFMFWN----VRKT 1232 (1624)
Q Consensus 1159 iP~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~-l~KV~L~F~~~fW~~~-~~~fG~~~~~~~~rg~~~~~~n----~~ap 1232 (1624)
+|+..+.. +...|.+|++..+.+.++.++. ...+++.|+....+.. ...+...... .+.+|+... ..+|
T Consensus 290 ~~~~~~~~--ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~d~~~aP 364 (492)
T TIGR02733 290 LPPQSLLE--LLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH---QGSLFVSISQEGDGRAP 364 (492)
T ss_pred CCHHHHHH--hcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC---CceEEEEeCCccccCCC
Confidence 99987753 3344678888888888998876 4489999987321111 1112211111 223444322 2356
Q ss_pred CCCcEEEEEEeCccccccCCCC-------HHHHHHHHHHHHHHHhCCCCCCCCceEEEe----ecCCCCCC-ccc-cccc
Q 046008 1233 VGAPVLIALVVGKAAVDGQNVS-------PSDHVNHAVMVLRQIFGAASVPDPVASVVT----DWGRDPFS-YGA-YSYV 1299 (1624)
Q Consensus 1233 ~G~~vLvayv~G~~A~~~e~lS-------dEElie~aL~~L~kIfG~~~vpdPi~ivvt----rW~~dp~s-~Gs-Ys~~ 1299 (1624)
+|+.++++.+.... ..|..+. .+++.+.+++.|.+.+|+. .+-+..... .|..-... .|+ |...
T Consensus 365 ~G~~~l~~~~~~~~-~~~~~~~~~~y~~~k~~~~~~il~~le~~~p~l--~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~ 441 (492)
T TIGR02733 365 QGEATLIASSFTDT-NDWSSLDEEDYTAKKKQYTQTIIERLGHYFDLL--EENWVHVELATPRTFERWTGRPQGIVGGLG 441 (492)
T ss_pred CCceEEEEEcCCCH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHCCCc--cccEEEEEccCCchHHHHhCCCCcEECCCC
Confidence 67777655544332 2333221 3457778888898888752 221111100 11111011 233 2221
Q ss_pred -CCCCCCchhhhhCCccCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHH
Q 046008 1300 -ATGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIID 1350 (1624)
Q Consensus 1300 -~pG~~~~~~d~L~tPV~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~ 1350 (1624)
...+........++|++| |||||++|.++ +.+.||+.||..||+.|+.
T Consensus 442 ~~~~q~~~~~~~~~t~i~g-Lyl~G~~~~pG--~Gv~g~~~sg~~~a~~i~~ 490 (492)
T TIGR02733 442 QRPSTFGPFGLSSRTPVKG-LWLCGDSIHPG--EGTAGVSYSALMVVRQILA 490 (492)
T ss_pred cCccccCCcCCCCCCCCCC-eEEecCccCCC--CcHHHHHHHHHHHHHHHhh
Confidence 122322222334789998 99999999662 4699999999999999874
No 23
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.96 E-value=1.2e-27 Score=289.62 Aligned_cols=420 Identities=20% Similarity=0.226 Sum_probs=259.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHH
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCA 939 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~Llk 939 (1624)
++|+|||||++||+|||+|+++| .+|+|||+.+++||.++|+.. +|++||.|+|.|..... .+..+++
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~-~G~~~e~G~~~f~~~~~---------~~l~li~ 70 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKI-DGFLFERGPHHFLARKE---------EILDLIK 70 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEee-CCEEEeechhheecchH---------HHHHHHH
Confidence 47999999999999999999999 899999999999999999987 59999999999987632 2346999
Q ss_pred HhCCceeeecC-CCCeeeccCCcccCcchHHH--HHH-------HHHHHHHHHHHHHHH-hhhhhhhccHHHHHHHHHHH
Q 046008 940 QLGLELTVLNS-DCPLYDIVSGQKVPANVDEA--LEA-------EFNSLLDDMVLLVAQ-KGEHAMKMSLEDGLEYALKR 1008 (1624)
Q Consensus 940 eLGLel~~l~~-~~~~yd~~~Gk~vp~~l~~~--l~~-------~~~slld~l~~~~~~-~g~~a~~~sled~Le~~lk~ 1008 (1624)
+||++...... ...-|.+.+|+.+|...... +.. .+..++..+ +.+ ......+.++++|+...+..
T Consensus 71 eLGled~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~sv~~f~r~~fG~ 147 (444)
T COG1232 71 ELGLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARALQEF---IRPKSWEPKQDISVGEFIRRRFGE 147 (444)
T ss_pred HhCcHHhhccCCcccceEeeCCcEEECCccceeecCCccccchhHHHHHHHhh---hcccCCCCCCCcCHHHHHHHHHhH
Confidence 99998877643 22335555665433221110 000 001111111 111 01122245556655443333
Q ss_pred HHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhccccccccccccccccccc
Q 046008 1009 RRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVY 1088 (1624)
Q Consensus 1009 ~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~~~~y 1088 (1624)
....+ +..++. .++++...+. +.-....|. +...+-.++..+....-......
T Consensus 148 ev~~~------------~~~pll--~giy~~~~~~--LS~~~~~p~--------~~~~e~~~~s~~~g~~~~~~~~~--- 200 (444)
T COG1232 148 EVVER------------FIEPLL--EGIYAGDADK--LSAAAAFPI--------LARAERKYGSLLRGAKKEGLPKQ--- 200 (444)
T ss_pred HHHHH------------HHHHHh--hchhcCCHHH--hhHHHhcch--------hhhhhhhhcchhhhhhhccCccc---
Confidence 21111 001100 0001110000 000000000 00001000100000000000000
Q ss_pred CCCCCccccccchHHHHHHHHhhhc--cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhhhhh
Q 046008 1089 GGFGGAHCMIKGGYSTVVEALGKEL--LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKA 1166 (1624)
Q Consensus 1089 ~g~~G~~~~VkGGm~sLveALAe~L--~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~vLk~ 1166 (1624)
....+.+++++||+++|+++|++.+ .|++|++|+.|.. +..++.+++.+|..+.||.||+|+|+..|..
T Consensus 201 ~~~~~~~~~~~gG~~~l~~al~~~l~~~i~~~~~V~~i~~---------~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ 271 (444)
T COG1232 201 SLKKEKFGYLRGGLQSLIEALAEKLEAKIRTGTEVTKIDK---------KGAGKTIVDVGGEKITADGVISTAPLPELAR 271 (444)
T ss_pred ccccccccccCccHHHHHHHHHHHhhhceeecceeeEEEE---------cCCccEEEEcCCceEEcceEEEcCCHHHHHH
Confidence 0012356788999999999999988 7889999999998 4556778888999999999999999998853
Q ss_pred hcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEec-----cccCCCCcEEEEE
Q 046008 1167 ESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWN-----VRKTVGAPVLIAL 1241 (1624)
Q Consensus 1167 ~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n-----~~ap~G~~vLvay 1241 (1624)
+.+. .....++.++.+..+..|++.|+..--....+.+|+...+.... ...++|+ ...+.|..++.++
T Consensus 272 ----ll~~--~~~~~~~~~~~~~s~~~vv~~~~~~~~~~~~~~~g~~iad~~~~-~~a~~~~S~~~p~~~p~g~~ll~~~ 344 (444)
T COG1232 272 ----LLGD--EAVSKAAKELQYTSVVTVVVGLDEKDNPALPDGYGLLIADDDPY-ILAITFHSNKWPHEAPEGKTLLRVE 344 (444)
T ss_pred ----HcCC--cchhhhhhhccccceEEEEEEeccccccCCCCceEEEEecCCCc-ceeEEEecccCCCCCCCCcEEEEEE
Confidence 2223 33457788999999999999998863223345666655444332 3334444 3445577788888
Q ss_pred EeCccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCCC---chhhhhCCccCCe
Q 046008 1242 VVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASG---EDYDILGRPVENC 1318 (1624)
Q Consensus 1242 v~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~---~~~d~L~tPV~gr 1318 (1624)
+.+........+++||+++.++.+|.++++... +|..+.++||.. +|..+.+|... ..+..+..-.+|
T Consensus 345 ~~~~g~~~~~~~~dee~~~~~l~~L~~~~~~~~--~~~~~~v~r~~~------~~PqY~vG~~~~~~~ir~~l~~~y~g- 415 (444)
T COG1232 345 FGGPGDESVSTMSDEELVAAVLDDLKKLGGING--DPVFVEVTRWKY------AMPQYEVGHLDRLEPIRAALKGAYPG- 415 (444)
T ss_pred eecCCCcchhccCHHHHHHHHHHHHHHHcCcCc--chhheeeeeccc------cCCccchhHHHHHHHHHHhhccccCC-
Confidence 777666666778999999999999999998754 556888899973 55555566532 222233332235
Q ss_pred EEEecCCccCCCCCcHHHHHHHHHHHHHHHH
Q 046008 1319 LFFAGEATCKEHPDTVGGAMLSGLREAVRII 1349 (1624)
Q Consensus 1319 LyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL 1349 (1624)
|+++|.+... . ++.+++.+|..||++|+
T Consensus 416 i~~~G~~~~g--~-g~~d~I~~g~~aa~~l~ 443 (444)
T COG1232 416 IKSVGRYGEG--V-GLPDCIAAGKEAAEQLL 443 (444)
T ss_pred eEEeccCCCC--C-CchHHHHHHHHHHHHhh
Confidence 9999996543 2 69999999999999875
No 24
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.96 E-value=6.7e-27 Score=290.02 Aligned_cols=430 Identities=19% Similarity=0.155 Sum_probs=237.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHHHhC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCAQLG 942 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~LlkeLG 942 (1624)
+|+|||||++||+||++|+++|++|+|||+++++||+++++....|+.+|.|+|++.+.+.+ +..+++++|
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~---------~~~~~~~lg 71 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYAN---------LFRLMKKVG 71 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHH---------HHHHHHHcC
Confidence 58999999999999999999999999999999999999997533589999999999986543 446899999
Q ss_pred CceeeecCCC-CeeeccCCcccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHH--HHhhcc----
Q 046008 943 LELTVLNSDC-PLYDIVSGQKVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRR--RMARLG---- 1015 (1624)
Q Consensus 943 Lel~~l~~~~-~~yd~~~Gk~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~--r~~~~~---- 1015 (1624)
+......... ..|...++..........+...+..+..-+ .....++.+.+....... ......
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l---------~~~~ls~~dklr~~~~~~~~~~~~~~~~~~ 142 (474)
T TIGR02732 72 AEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFF---------TTSQLKWVDKLRNALALGTSPIVRGLVDYD 142 (474)
T ss_pred CccccccccceeEEEcCCCcccccccCCCCCCchhhhHHHh---------cCCCCCHHHHHHHHHHhhhhHHHhhccccc
Confidence 8654333221 222211222100000000000000000000 000111111111100000 000000
Q ss_pred ---CCcccccccchhhHhhcccCCCCCCCCcccchhccCCH-HHHHHHHHHHHhhhhhccccccccccccccc-ccccC-
Q 046008 1016 ---RGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSP-VERRVMDWHFANLEYGCAALLKEVSLPFWNQ-DDVYG- 1089 (1624)
Q Consensus 1016 ---~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp-~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~-~~~y~- 1089 (1624)
..........+.+ ++.+...++ ..+++++.++... ++.+++.+|+..... ...+.
T Consensus 143 ~~~~~~~~~~~~t~~~----------------~l~~~~~~~~~~~~~~~Pll~~~---~~~~~~~~Sa~~~~~~~~~~~~ 203 (474)
T TIGR02732 143 GAMKTIRDLDKISFAE----------------WFLSHGGSLGSIKRMWDPIAYAL---GFIDCENISARCMLTIFMLFAA 203 (474)
T ss_pred hhhhhhhhhccccHHH----------------HHHHcCCCHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHh
Confidence 0000001111222 333444454 2555556554333 223445555532210 00111
Q ss_pred -CCCCccccccchHHH-HHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCC--cEEEEeCCC---cEEEcCEEEE
Q 046008 1090 -GFGGAHCMIKGGYST-VVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQS--RVKVSTSNG---SEFSGDAVLI 1157 (1624)
Q Consensus 1090 -g~~G~~~~VkGGm~s-LveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~--~V~V~TadG---eti~AD~VIs 1157 (1624)
..+.....++||++. +.+.|++.| +|+++++|++|..+..+ ++. .+.|++.+| +++.||+||+
T Consensus 204 ~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~-----~~~~~v~~v~~~~g~~~~~~~aD~VVl 278 (474)
T TIGR02732 204 KTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSS-----DGSTRVTGLIMSKPEGKKVIKADAYVA 278 (474)
T ss_pred CCCcceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCC-----CCceeEEEEEEecCCcceEEECCEEEE
Confidence 111233455677655 333344444 89999999999984100 011 233445444 5689999999
Q ss_pred ccChhhhhhhcccCCCCCc--HHHHHHHHhcCCccEEEEEEEeCCccccCCC--------ccccccccccCCCCceeE-E
Q 046008 1158 TVPLGCLKAESIMFSPPLP--QWKYSAIQRLGFGVLNKVVLEFAEVFWDDTV--------DYFGATAKETDLRGRCFM-F 1226 (1624)
Q Consensus 1158 AiP~~vLk~~~I~F~P~LP--~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~--------~~fG~~~~~~~~rg~~~~-~ 1226 (1624)
|+|+..+... .|.++ ....+.+..+++.++..|+|.|+++.-.... ...|+..- .......+. +
T Consensus 279 A~p~~~~~~L----l~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~ 353 (474)
T TIGR02732 279 ACDVPGIKRL----LPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQLKRAAGLDNL-LYTADADFSCF 353 (474)
T ss_pred CCChHHHHhh----CChhhhcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhccccccccccc-ccccCccceee
Confidence 9999977532 23221 1356788899999999999999864322110 01111100 000010111 1
Q ss_pred ecc-------ccCCCCcE-EEEEEeCccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccc
Q 046008 1227 WNV-------RKTVGAPV-LIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSY 1298 (1624)
Q Consensus 1227 ~n~-------~ap~G~~v-Lvayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~ 1298 (1624)
.+. ..+.+... |.+++.. +..+..++++++++.++++|+++||......+....+.+..+.-| .
T Consensus 354 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~l~~~~~~~L~~~~p~~~~~~~~~~~v~~~~~a~~------~ 425 (474)
T TIGR02732 354 ADLALTSPDDYYKEGQGSLLQCVLTP--GDPWMPESNEEIAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLY------R 425 (474)
T ss_pred ehhhccCHHHHhccCCCeEEEEEEeC--hhhhcCCCHHHHHHHHHHHHHHhCccccCCceeEEEEEEecCcee------c
Confidence 110 11223333 4444443 345777999999999999999999963222344444555443322 2
Q ss_pred cCCCCCCchhhhhCCccCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHH
Q 046008 1299 VATGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRII 1349 (1624)
Q Consensus 1299 ~~pG~~~~~~d~L~tPV~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL 1349 (1624)
..||.. ..++..++|++| ||+|||+|...|+++||||+.||.+||+.|+
T Consensus 426 ~~pg~~-~~~P~~~t~~~~-l~lAGD~t~~~~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 426 EAPGMD-PFRPDQKTPISN-FFLAGSYTQQDYIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred cCCCCc-ccCCCCCCCCCC-eEEeccccccCchHHHhHHHHHHHHHHHHhC
Confidence 235552 345677889988 9999999999999999999999999999764
No 25
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.95 E-value=6.3e-26 Score=283.21 Aligned_cols=442 Identities=19% Similarity=0.162 Sum_probs=240.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHHHhCC
Q 046008 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCAQLGL 943 (1624)
Q Consensus 864 v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~LlkeLGL 943 (1624)
|||||||++||+||++|+++|++|+|||+++++||+++++.. .|+.||+|++|+.+. +++..+++++|+
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~-~G~~fD~G~~~~~~~----------~~~~~l~~~lg~ 69 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLED-DGFRFDTGPTVITMP----------EALEELFALAGR 69 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEec-CCeEEecCCeEEccc----------cHHHHHHHHcCC
Confidence 699999999999999999999999999999999999999998 499999999998732 345668888885
Q ss_pred ce----eeecCCCC-eeeccCCcccCcchH-HHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHhh-ccC
Q 046008 944 EL----TVLNSDCP-LYDIVSGQKVPANVD-EALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMAR-LGR 1016 (1624)
Q Consensus 944 el----~~l~~~~~-~yd~~~Gk~vp~~l~-~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~r~~~-~~~ 1016 (1624)
++ .....+.. .+.+.+|..++...+ ..+...+..++..-. . .+..++........... ...
T Consensus 70 ~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~--------~----~~~~~~~~~~~~~~~~~~~~~ 137 (502)
T TIGR02734 70 DLADYVELVPLDPFYRLCWEDGSQLDVDNDQEELEAQIARFNPGDV--------A----GYRRFLDYAERVYREGYRKLG 137 (502)
T ss_pred ChhheEEEEECCCceEEECCCCCEEEecCCHHHHHHHHHHhCcccH--------H----HHHHHHHHHHHHHHHHHHHHh
Confidence 32 22222211 122233433332111 111111111110000 0 01111110000000000 000
Q ss_pred CcccccccchhhHhh----cccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccccccccccccccccCCCC
Q 046008 1017 GREDASMHNSMDVYS----KTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGGFG 1092 (1624)
Q Consensus 1017 ~~~~~~~~~a~d~fs----~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~~~~y~g~~ 1092 (1624)
. .+.....+.+. ............+++.+.+.++..+.+|.+...+ + +..+...++.+... .+..+.
T Consensus 138 ~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~--~--g~~p~~~~~~~~l~--~~~~~~ 208 (502)
T TIGR02734 138 Y---VPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALF--L--GGNPFRTPSIYALI--SALERE 208 (502)
T ss_pred h---CCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhccccee--e--ccCcccchHHHHHH--HHHHhh
Confidence 0 00000000000 0000001111122445556677777777543211 1 22333333222111 111233
Q ss_pred CccccccchHHHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhhhhhh
Q 046008 1093 GAHCMIKGGYSTVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAE 1167 (1624)
Q Consensus 1093 G~~~~VkGGm~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~vLk~~ 1167 (1624)
++.+++.||++.++++|++.+ +|+++++|++|..+ +++.+.|++.+|+++.||+||+|+++..+...
T Consensus 209 ~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~--------~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~ 280 (502)
T TIGR02734 209 WGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE--------GGRATAVHLADGERLDADAVVSNADLHHTYRR 280 (502)
T ss_pred ceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee--------CCEEEEEEECCCCEEECCEEEECCcHHHHHHH
Confidence 456678999999999998755 79999999999874 33447888999989999999999998665432
Q ss_pred cccCCCCCcHHHHHHHHhcCCc-cEEEEEEEeC---CccccCC--Cc-ccccccc----------ccCCCCceeEEe---
Q 046008 1168 SIMFSPPLPQWKYSAIQRLGFG-VLNKVVLEFA---EVFWDDT--VD-YFGATAK----------ETDLRGRCFMFW--- 1227 (1624)
Q Consensus 1168 ~I~F~P~LP~~k~qAI~~L~yg-~l~KV~L~F~---~~fW~~~--~~-~fG~~~~----------~~~~rg~~~~~~--- 1227 (1624)
.+ -.+..|....+.+.++.++ ....+++.++ .. |+.. .. ++..... ..+....+|+..
T Consensus 281 l~-~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~ 358 (502)
T TIGR02734 281 LL-PNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGH-WPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTV 358 (502)
T ss_pred hc-CccccccccccccccCCcCCeeeEEEEeeccccCc-CCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCC
Confidence 22 1222233444556666654 5568899888 33 3311 11 1111110 111122333322
Q ss_pred --ccccCCCCcEEEEEEeCccc----cccCCCCHHHHHHHHHHHHHHH-hCCCCCCCCceEEEeecCCCCCC--------
Q 046008 1228 --NVRKTVGAPVLIALVVGKAA----VDGQNVSPSDHVNHAVMVLRQI-FGAASVPDPVASVVTDWGRDPFS-------- 1292 (1624)
Q Consensus 1228 --n~~ap~G~~vLvayv~G~~A----~~~e~lSdEElie~aL~~L~kI-fG~~~vpdPi~ivvtrW~~dp~s-------- 1292 (1624)
+..+|+|+.++.+++..... ..|... .+++.+.+++.|.+. +|+. .+ .++......|-.
T Consensus 359 ~dp~~aP~G~~~~~~~~~~~~~~~~~~~~~~~-k~~~~~~il~~l~~~~~p~l--~~---~i~~~~~~TP~t~~~~~~~~ 432 (502)
T TIGR02734 359 TDPSLAPPGCENLYVLAPVPHLGTADVDWSVE-GPRYRDRILAYLEERAIPGL--RD---RIVVERTFTPADFRDRYNAW 432 (502)
T ss_pred CCCCCCCCCCccEEEEEeCCCCCCCCCCcHHH-HHHHHHHHHHHHHHhcCCCh--hH---heEEEEEcCHHHHHHhcCCC
Confidence 12356777777666644321 123322 466888899999887 7652 11 111222122222
Q ss_pred ccc-cccc-CCCCCCchhhh-hCCccCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHccCC
Q 046008 1293 YGA-YSYV-ATGASGEDYDI-LGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTTGN 1356 (1624)
Q Consensus 1293 ~Gs-Ys~~-~pG~~~~~~d~-L~tPV~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~~~~ 1356 (1624)
.|+ |... ...+....++. ..+|++| |||||++|.++ +.+.||+.||+.||+.|+..++.+.
T Consensus 433 ~G~~~G~~~~~~q~~~~rp~~~~t~i~g-Lyl~G~~~~pG--~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 433 LGSAFSLEHTLTQSAWFRPHNRDRKIDN-LYLVGAGTHPG--AGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred CccccchhhchhhcccCCCCCCCCCCCC-EEEeCCCCCCC--CCHHHHHHHHHHHHHHHHhhccCCC
Confidence 222 2211 11222222222 3578988 99999998652 4699999999999999999988764
No 26
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.94 E-value=8.1e-25 Score=272.90 Aligned_cols=452 Identities=16% Similarity=0.129 Sum_probs=243.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHHHh
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCAQL 941 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~LlkeL 941 (1624)
+||+|||||++||+||.+|+++|++|+||||++.+||+++++.. .|+.||.|++++.+..... .++++..++..+
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~-~G~~fd~g~~~~~~~~~~~----~~~~~~~~~~~~ 75 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFER-EGYRFDVGASMIFGFGDKG----TTNLLTRALAAV 75 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEecc-CCEEEEecchhheecCCcc----cccHHHHHHHHc
Confidence 47999999999999999999999999999999999999999988 5999999999998764321 124455567777
Q ss_pred CCceeeecCCCC-eeeccCCcccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHH----HHhhcc-
Q 046008 942 GLELTVLNSDCP-LYDIVSGQKVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRR----RMARLG- 1015 (1624)
Q Consensus 942 GLel~~l~~~~~-~yd~~~Gk~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~----r~~~~~- 1015 (1624)
|..+........ .+.+.+|..+....+ +..+.+.+...+.. ... .+..++....... .+....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~g~~~~~~~d------~~~~~~~l~~~~P~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 144 (493)
T TIGR02730 76 GRKLETIPDPVQIHYHLPNGLNVKVHRE------YDDFIQELVAKFPH-EKE----GIRRFYDECWQVFNCLNSMELLSL 144 (493)
T ss_pred CCcccccCCCccEEEECCCCeeEeeecC------HHHHHHHHHHHCch-hHH----HHHHHHHHHHHHHHHHHhhhhccc
Confidence 755443332222 222223432221110 11111111110000 000 0111111000000 000000
Q ss_pred CCccccc-----ccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccccccccccccccccCC
Q 046008 1016 RGREDAS-----MHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQDDVYGG 1090 (1624)
Q Consensus 1016 ~~~~~~~-----~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~~~~y~g 1090 (1624)
.....+. .......+... ...+..+++.+.+.++..+.+|.....+..+. +.....+.+...... ..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~---p~~~~p~~~~~~~~~-~~ 216 (493)
T TIGR02730 145 EEPRYLFRVFFKHPLACLGLAKY----LPQNAGDIARRYIRDPGLLKFIDIECFCWSVV---PADQTPMINAGMVFS-DR 216 (493)
T ss_pred cChHHHHHHHhhchhhhhHHHHH----hhccHHHHHHHhcCCHHHHHHHHHHHHhccCC---CcccchhhhHHHhhc-cc
Confidence 0000000 00000000000 00112234556678898888887654333221 112222211110000 01
Q ss_pred CCCccccccchHHHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhhhh
Q 046008 1091 FGGAHCMIKGGYSTVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLK 1165 (1624)
Q Consensus 1091 ~~G~~~~VkGGm~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~vLk 1165 (1624)
..++.+++.||++.|+++|++.+ +|+++++|++|..+ +++.+.|++.+|+++.||.||+|+.+..+.
T Consensus 217 ~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~--------~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~ 288 (493)
T TIGR02730 217 HYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE--------NGKAVGVKLADGEKIYAKRIVSNATRWDTF 288 (493)
T ss_pred ccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec--------CCcEEEEEeCCCCEEEcCEEEECCChHHHH
Confidence 23456779999999999998766 79999999999884 345677888899999999999999775443
Q ss_pred hhcccCCCCCcHHHHHHHHhcCCc-cEEEEEEEeCCccccCC---Cccccccccc-cCCCCceeEEe-----ccccCCCC
Q 046008 1166 AESIMFSPPLPQWKYSAIQRLGFG-VLNKVVLEFAEVFWDDT---VDYFGATAKE-TDLRGRCFMFW-----NVRKTVGA 1235 (1624)
Q Consensus 1166 ~~~I~F~P~LP~~k~qAI~~L~yg-~l~KV~L~F~~~fW~~~---~~~fG~~~~~-~~~rg~~~~~~-----n~~ap~G~ 1235 (1624)
...+ -...+|......++++.++ ...++++.++...-+.. ...+-..... ....+.+|+.. +..+|+|.
T Consensus 289 ~~Ll-~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~ 367 (493)
T TIGR02730 289 GKLL-KAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGH 367 (493)
T ss_pred HHhC-CccccchhhHHHHhhccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCc
Confidence 2222 1223454444555666665 47789999987432211 1111000000 11123344332 22356677
Q ss_pred cEEEEEEeCccccccCCCC-------HHHHHHHHHHHHHHHhCCCCCCCCceEEE---e-ecCC-CCCCcccccccCCCC
Q 046008 1236 PVLIALVVGKAAVDGQNVS-------PSDHVNHAVMVLRQIFGAASVPDPVASVV---T-DWGR-DPFSYGAYSYVATGA 1303 (1624)
Q Consensus 1236 ~vLvayv~G~~A~~~e~lS-------dEElie~aL~~L~kIfG~~~vpdPi~ivv---t-rW~~-dp~s~GsYs~~~pG~ 1303 (1624)
.++.+++.. ....|..++ .+++.+.+++.|.++||+. .+-+.... . .|.. .....|+|...+...
T Consensus 368 ~~i~~~~~~-~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~~p~l--~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~ 444 (493)
T TIGR02730 368 HIIHTFTPS-SMEDWQGLSPKDYEAKKEADAERIIDRLEKIFPGL--DSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRT 444 (493)
T ss_pred EEEEEecCC-ChhhccCCCcHHHHHHHHHHHHHHHHHHHHHCCCh--hhcEEEEEeeCchhHHHHhCCCCcccCCccccc
Confidence 777666632 223343222 3457888889999988752 22111111 0 1111 011135553222111
Q ss_pred CCchh--hhhCCccCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 046008 1304 SGEDY--DILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDIL 1352 (1624)
Q Consensus 1304 ~~~~~--d~L~tPV~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L 1352 (1624)
..... +..++|++| |||||++|.+ +|.+.||+.||+.||+.|+..+
T Consensus 445 ~~~~~~~~~~~t~i~g-Lyl~G~~~~p--G~Gv~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 445 LPGLLPMPFNRTAIPG-LYCVGDSCFP--GQGLNAVAFSGFACAHRVAADL 492 (493)
T ss_pred ccccccCCCCCCCCCC-eEEecCcCCC--CCCHHHHHHHHHHHHHHHHhhc
Confidence 11111 234689998 9999999865 2479999999999999999765
No 27
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.90 E-value=1.6e-22 Score=235.97 Aligned_cols=441 Identities=19% Similarity=0.216 Sum_probs=265.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcE--EEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHH
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSV--TVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSS 935 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v--~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~ 935 (1624)
....++|+|||||++||+|||+|++++.+| +|||+.+|+||++++.....|+.||.|+..+.+.+..... ..
T Consensus 8 ~~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~------~l 81 (491)
T KOG1276|consen 8 AVSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAE------TL 81 (491)
T ss_pred ceecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhH------HH
Confidence 456789999999999999999999998775 6699999999999996666799999999999987764321 35
Q ss_pred HHHHHhCCcee--eecCCCC----eeeccCCc--ccCcchHHHHHHHHHHHHHHHHHH-----HHHh-hhhhhhccHHHH
Q 046008 936 LVCAQLGLELT--VLNSDCP----LYDIVSGQ--KVPANVDEALEAEFNSLLDDMVLL-----VAQK-GEHAMKMSLEDG 1001 (1624)
Q Consensus 936 ~LlkeLGLel~--~l~~~~~----~yd~~~Gk--~vp~~l~~~l~~~~~slld~l~~~-----~~~~-g~~a~~~sled~ 1001 (1624)
.++.+||++.. .+...++ .|.++.|+ .+|..+...+......+...+... +... ......++.+.|
T Consensus 82 ~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF 161 (491)
T KOG1276|consen 82 DLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESF 161 (491)
T ss_pred HHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHH
Confidence 68999999644 4445555 55555663 344433332222211111111111 1110 111224455555
Q ss_pred HHHHHHHHHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhccccccccccc-
Q 046008 1002 LEYALKRRRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLP- 1080 (1624)
Q Consensus 1002 Le~~lk~~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~- 1080 (1624)
.+..+.... .+.+++.| .++++++.+.. ++. +..|.. +++.|..+|..+...-..
T Consensus 162 ~~RrfG~eV------------~d~~isp~--i~GiyAgD~~~-------LSm--k~~F~~-l~~~Eqk~Gsi~~G~i~~~ 217 (491)
T KOG1276|consen 162 ARRRFGKEV------------ADRLISPF--IRGIYAGDPSE-------LSM--KSSFGK-LWKVEQKHGSIILGTIRAK 217 (491)
T ss_pred HHHhhhHHH------------HHHHHHHH--hCccccCChHH-------hhH--HHHHHH-HHHHHHhccchhHHHHHHH
Confidence 443322211 11222322 23344444322 111 111211 122232222211100000
Q ss_pred -------ccccccccCC--CCCccccccchHHHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEEeCC
Q 046008 1081 -------FWNQDDVYGG--FGGAHCMIKGGYSTVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSN 1146 (1624)
Q Consensus 1081 -------~~~~~~~y~g--~~G~~~~VkGGm~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~Tad 1146 (1624)
.......... -.-..+.++||++.+.++|.+.| .|.+..+|.-|.... .++-.++++..+
T Consensus 218 ~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~------~~~~~~tl~~~~ 291 (491)
T KOG1276|consen 218 FARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSR------SGNWSLTLVDHS 291 (491)
T ss_pred HHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccc------cCCceeEeEcCC
Confidence 0000000000 11233567999999999999888 356677777666531 123345556666
Q ss_pred Cc-EEEcCEEEEccChhhhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCcccccccc--ccCCCCce
Q 046008 1147 GS-EFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAK--ETDLRGRC 1223 (1624)
Q Consensus 1147 Ge-ti~AD~VIsAiP~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~--~~~~rg~~ 1223 (1624)
|. ....++++.|+|..++.. ..|.+.+....++..+.|.++..|++.|+.+--+-...+||+..+ .......+
T Consensus 292 ~~~~~~~~~~~~t~~~~k~a~----ll~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~L 367 (491)
T KOG1276|consen 292 GTQRVVVSYDAATLPAVKLAK----LLRGLQNSLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTL 367 (491)
T ss_pred CceeeeccccccccchHHhhh----hccccchhhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCcee
Confidence 63 445677778999988753 346677777899999999999999999998655566789998776 33333445
Q ss_pred eEEecccc---CCCCcEEEEEEeCccccccC--CCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccc
Q 046008 1224 FMFWNVRK---TVGAPVLIALVVGKAAVDGQ--NVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSY 1298 (1624)
Q Consensus 1224 ~~~~n~~a---p~G~~vLvayv~G~~A~~~e--~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~ 1298 (1624)
..+|+... ..+.+.+++++.|.+...+. ..+++++++.+.++|+++++... .|....++-|.. |...
T Consensus 368 G~ifdS~~Fp~~~~s~~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~~--~P~~~~v~l~~~------ciPq 439 (491)
T KOG1276|consen 368 GTIFDSMLFPDRSPSPKVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGISN--KPVSVNVHLWKN------CIPQ 439 (491)
T ss_pred EEEeecccCCCCCCCceEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCCC--Ccccccceehhh------cccc
Confidence 55555432 23445788888877776554 55899999999999999999654 366656666752 3333
Q ss_pred cCCCCCC---chhhhhCCccCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHH
Q 046008 1299 VATGASG---EDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRII 1349 (1624)
Q Consensus 1299 ~~pG~~~---~~~d~L~tPV~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL 1349 (1624)
+.+|... .....+....+.+|++||.|+.. . .+.-+|.+|.++|.+++
T Consensus 440 y~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~G--v-~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 440 YTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGG--V-SVGDCIESGRKTAVEVI 490 (491)
T ss_pred eecchHHHHHHHHHHHHhCCCCceEeeccccCC--C-ChhHHHHhhHHHHHhhc
Confidence 3444321 11222333332349999998764 2 48889999999998875
No 28
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.90 E-value=4.2e-23 Score=229.04 Aligned_cols=226 Identities=17% Similarity=0.197 Sum_probs=159.3
Q ss_pred ccccchHHHHHHHHhhhccccccceEEEEEecCCCCCCCCCCCcEEEEeCCC-cEEEcCEEEEccChhhhhhhcccCCCC
Q 046008 1096 CMIKGGYSTVVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNG-SEFSGDAVLITVPLGCLKAESIMFSPP 1174 (1624)
Q Consensus 1096 ~~VkGGm~sLveALAe~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadG-eti~AD~VIsAiP~~vLk~~~I~F~P~ 1174 (1624)
|.-.-||+.|++.|+..|+|+++++|++|.+ .++.+++++.+| ....+|.||+|+|.+.+....-...-.
T Consensus 101 yvg~pgmsalak~LAtdL~V~~~~rVt~v~~---------~~~~W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~ 171 (331)
T COG3380 101 YVGEPGMSALAKFLATDLTVVLETRVTEVAR---------TDNDWTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADD 171 (331)
T ss_pred cccCcchHHHHHHHhccchhhhhhhhhhhee---------cCCeeEEEecCCCcccccceEEEecCCCcchhhcCccccc
Confidence 3447899999999999999999999999998 577899999776 577899999999998765322112346
Q ss_pred CcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEeccccC---CCCcEEEEEEeCccccccC
Q 046008 1175 LPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKT---VGAPVLIALVVGKAAVDGQ 1251 (1624)
Q Consensus 1175 LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n~~ap---~G~~vLvayv~G~~A~~~e 1251 (1624)
+|...++++..+.|.+...+.|.|+.+.-. .+.|....+ ....++--+..++ +...++++-...+++....
T Consensus 172 ~p~~l~~~~a~V~y~Pc~s~~lg~~q~l~~---P~~G~~vdg---~~laWla~d~sK~g~~p~~~~~vvqasp~wSr~h~ 245 (331)
T COG3380 172 LPAALRAALADVVYAPCWSAVLGYPQPLDR---PWPGNFVDG---HPLAWLARDASKKGHVPDGEIWVVQASPDWSREHL 245 (331)
T ss_pred chHHHHHhhccceehhHHHHHhcCCccCCC---CCCCcccCC---CeeeeeeccccCCCCCCcCceEEEEeCchHHHHhh
Confidence 899999999999999999999999976422 233321111 1112222232222 1223677777777888888
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhhhC-CccCCeEEEecCCccCCC
Q 046008 1252 NVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILG-RPVENCLFFAGEATCKEH 1330 (1624)
Q Consensus 1252 ~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~-tPV~grLyFAGEaTs~~~ 1330 (1624)
.+++++.+.++......++|. ..|+|.....++|. |+. |..... .+.+- .+ +.+||+|||++..
T Consensus 246 ~~~~e~~i~~l~aA~~~~~~~-~~~~p~~s~~H~Wr--------YA~--P~~~~~-~~~L~ad~-~~~l~~cGDwc~G-- 310 (331)
T COG3380 246 DHPAEQVIVALRAAAQELDGD-RLPEPDWSDAHRWR--------YAI--PNDAVA-GPPLDADR-ELPLYACGDWCAG-- 310 (331)
T ss_pred cCCHHHHHHHHHHhhhhccCC-CCCcchHHHhhccc--------ccc--cccccc-CCccccCC-CCceeeecccccC--
Confidence 899999886666667777764 36888888889996 432 211110 11121 22 2249999998864
Q ss_pred CCcHHHHHHHHHHHHHHHHHHH
Q 046008 1331 PDTVGGAMLSGLREAVRIIDIL 1352 (1624)
Q Consensus 1331 ~GtVEGAi~SGiRAA~~IL~~L 1352 (1624)
|-+|||++||+.+|.+|++.|
T Consensus 311 -grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 311 -GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred -cchhHHHhccHHHHHHHHhcC
Confidence 679999999999999998754
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=6e-21 Score=237.82 Aligned_cols=259 Identities=24% Similarity=0.285 Sum_probs=146.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHH
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCA 939 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~Llk 939 (1624)
..++|||||||++||+||.+|+++|++|+||||++++||+++++... ||.||+|++++...... .+++
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~-Gf~fd~G~~~~~~~~~~-----------~~~~ 69 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELD-GFRFDTGPSWYLMPDPG-----------PLFR 69 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEecc-ceEeccCcceeecCchH-----------HHHH
Confidence 35899999999999999999999999999999999999999999986 99999999999875542 3666
Q ss_pred HhC-CceeeecC--CCCeeecc-C-CcccC--cchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHh
Q 046008 940 QLG-LELTVLNS--DCPLYDIV-S-GQKVP--ANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRMA 1012 (1624)
Q Consensus 940 eLG-Lel~~l~~--~~~~yd~~-~-Gk~vp--~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~r~~ 1012 (1624)
+|+ +....+.. ..+.+... . |..+. .++.. ....+....... + ..+..++....+.....
T Consensus 70 ~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~~~-~~~~~~~~~p~~-------~-----~~~~~~~~~~~~~~~~~ 136 (487)
T COG1233 70 ELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDLEA-TAELLESLEPGD-------G-----EALARYLRLLARLYELL 136 (487)
T ss_pred HhccCcccceeeeccCCceeeecCCCCEEEecCCHHH-HHHHHHhhCccc-------H-----HHHHHHHHHHHHhhHHH
Confidence 777 54332221 11222222 2 32222 11111 111111000000 0 00000110000000000
Q ss_pred -h--ccCCcccc--ccc---chhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhccccccccccccccc
Q 046008 1013 -R--LGRGREDA--SMH---NSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQ 1084 (1624)
Q Consensus 1013 -~--~~~~~~~~--~~~---~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~ 1084 (1624)
. ........ ... .+....... ..+..+++...+.++..+++|.+...+. . ..+....+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~f~~~~~r~~~~~~~~~~---~-~~p~~~~a~~~-- 205 (487)
T COG1233 137 AALLLAPPRSELLLVPDTPERLLRLLGFS-----LTSALDFFRGRFGSELLRALLAYSAVYG---G-APPSTPPALYL-- 205 (487)
T ss_pred HhhcCCCchhhhhhccccHHHHHHHHHHh-----hhhHHHHHHHHhcCHHHHHHHHHHHHhc---C-CCCCchhHHHH--
Confidence 0 00000000 000 000000000 0111123344466777777776543332 1 22222221111
Q ss_pred ccccCCCCCccccccchHHHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEcc
Q 046008 1085 DDVYGGFGGAHCMIKGGYSTVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITV 1159 (1624)
Q Consensus 1085 ~~~y~g~~G~~~~VkGGm~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAi 1159 (1624)
...+..+.++.++++|||+.|+++|++.+ +|+++++|++|..+ ++.+++|++.+|..+.+|.||+++
T Consensus 206 ~~~~~~~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~--------~g~g~~~~~~~g~~~~ad~vv~~~ 277 (487)
T COG1233 206 LLSHLGLSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE--------GGKGVGVRTSDGENIEADAVVSNA 277 (487)
T ss_pred HHHHhcccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe--------CCcceEEeccccceeccceeEecC
Confidence 11122355677789999999999999855 89999999999985 455789999998889999999999
Q ss_pred Chh
Q 046008 1160 PLG 1162 (1624)
Q Consensus 1160 P~~ 1162 (1624)
-+.
T Consensus 278 ~~~ 280 (487)
T COG1233 278 DPA 280 (487)
T ss_pred chh
Confidence 883
No 30
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=6.9e-20 Score=221.75 Aligned_cols=434 Identities=19% Similarity=0.143 Sum_probs=216.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHHHh
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCAQL 941 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~LlkeL 941 (1624)
++|+|+|||+|||+||++|+++||+|+|+|+++++||.+.+.+..+|.++|+|.|+|++++.+.+ .+++++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~---------~ll~~~ 71 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLL---------TLLKEL 71 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHH---------HHhhhC
Confidence 58999999999999999999999999999999999999999998899999999999999998754 377888
Q ss_pred CCceeeecCCC-CeeeccC---Cc----ccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHH--
Q 046008 942 GLELTVLNSDC-PLYDIVS---GQ----KVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEYALKRRRM-- 1011 (1624)
Q Consensus 942 GLel~~l~~~~-~~yd~~~---Gk----~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~~lk~~r~-- 1011 (1624)
+.+........ ..|.-.. |. ..+... ..++.+...+.. ......+.+...+.....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p-----~p~~~~~~~l~~---------~~~~~~~~~~~~~~l~~~~~ 137 (485)
T COG3349 72 PIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAP-----QPTNGLKAFLRL---------PQLPRREKIRFVLRLGDAPI 137 (485)
T ss_pred CchheeehHhhhhhhcccCCCCCcccccccCCCC-----Ccchhhhhhhhc---------cccCHHHHhHHhhccccccc
Confidence 77654432111 1110000 00 000000 000000000000 000000000000000000
Q ss_pred hhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccccccccccccc---ccc
Q 046008 1012 ARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPFWNQD---DVY 1088 (1624)
Q Consensus 1012 ~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~~~~~---~~y 1088 (1624)
+ ......++..-.+.++|... ....+..++.|......+.|. .++..+...+... ...
T Consensus 138 g-~~~~~~eld~~s~~d~l~~~---------------g~~~~~~k~~~~~~~~~l~f~---~~e~~sa~~~lt~~~~~~~ 198 (485)
T COG3349 138 G-ADRSLRELDKISFADWLKEK---------------GAREGAYKAAFAPIALALTFI---DPEGCSARFFLTILNLFLI 198 (485)
T ss_pred h-hHHHHHHHhcccHHHHHHHh---------------CCCchhHHHHHHHHHHhhccc---CcccCcchhHHHHHHHHHH
Confidence 0 00000001111122222111 001111222222222111111 1111111100000 000
Q ss_pred CC-CCCccccccchHHH-----HHHHHhh-hccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEE---EcCEEEEc
Q 046008 1089 GG-FGGAHCMIKGGYST-----VVEALGK-ELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEF---SGDAVLIT 1158 (1624)
Q Consensus 1089 ~g-~~G~~~~VkGGm~s-----LveALAe-~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti---~AD~VIsA 1158 (1624)
.. -...+..+.|+... +.+.+-+ +-+++++++|..|.++.. +.....+.+... +..+ .++.|+.+
T Consensus 199 ~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~----~~~~~~~g~~~~-~~~~e~~~~~~~~~~ 273 (485)
T COG3349 199 VTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGA----RGLAKVTGGDVT-GPEQEQQAALAVVDA 273 (485)
T ss_pred hccCcchhhhhcCCCcceeeehhhhhccccCceeeccceeeeeecccc----ccccceEeeeec-CcceEeeehhhhhcc
Confidence 00 01112223333322 2223332 228999999999999632 112223444333 5333 44555555
Q ss_pred cChhhhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeCCcccc-CC-Ccccccc---ccccCCCCceeEE---eccc
Q 046008 1159 VPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWD-DT-VDYFGAT---AKETDLRGRCFMF---WNVR 1230 (1624)
Q Consensus 1159 iP~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~-~~-~~~fG~~---~~~~~~rg~~~~~---~n~~ 1230 (1624)
.....+... .-.+.-+....+.|..+...+..++++.|+...|. .. ..-|++. ....+..+.++.. +...
T Consensus 274 ~~v~~~~~~--~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y 351 (485)
T COG3349 274 FAVQRFKRD--LPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDY 351 (485)
T ss_pred cccchHhhc--CcccccccccccccccccccceeEEEEeecCccccccccchhhhhhccccccccCCceeeeccccchhh
Confidence 555554421 11111113334667777888999999999964432 22 1222221 1111111111110 1111
Q ss_pred cCCCCcEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhh
Q 046008 1231 KTVGAPVLIALVVGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDI 1310 (1624)
Q Consensus 1231 ap~G~~vLvayv~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~ 1310 (1624)
..+|.....=++.+ .+..|...+.+++....++.+..++|.....+ ..+.+..-. . +.....||. ..+++.
T Consensus 352 ~e~g~~~~le~~~~-~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~-~~~~~i~~~-----q-~~~~~~pgs-~~~rP~ 422 (485)
T COG3349 352 VEPGAGCYLEKVLA-PGWPFLFESDEAIVATFEKELYELVPSLAEAK-LKSSVLVNQ-----Q-SLYGLAPGS-YHYRPE 422 (485)
T ss_pred ccccchhhhhhhhc-ccccccccchhhHHHHHHHHhhhcCCchhccc-ccccceecc-----c-cccccCCCc-cccCCC
Confidence 12222111111111 23456667889999999999998887643222 111111111 1 111223443 256677
Q ss_pred hCCccCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcc
Q 046008 1311 LGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTT 1354 (1624)
Q Consensus 1311 L~tPV~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~~ 1354 (1624)
..+|++| +++||+++-..+.++||||..||++||+.|++.+.-
T Consensus 423 ~~Tpv~N-~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~ 465 (485)
T COG3349 423 QKTPIPN-LLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGH 465 (485)
T ss_pred CCCCccc-hhhccceeecCCcCccchhhhhHHHHHHHHHHhhhh
Confidence 8899998 999999999989999999999999999999988874
No 31
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.79 E-value=1.1e-17 Score=196.03 Aligned_cols=454 Identities=19% Similarity=0.139 Sum_probs=234.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHH
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVC 938 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~Ll 938 (1624)
.+.+|++|||+|..||+||.+|++.|.+|.|+|++.++||..-+...-.|+.|+.+...+....+- .+-...+
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~slLrp~-------~~~~~~l 84 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLLSLLRPR-------GPQELEL 84 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHHHhhccc-------ccccchH
Confidence 568999999999999999999999999999999999999988776654689999888776655442 1222345
Q ss_pred HHhCCceeeecCCCCeeeccCC---------cccCcch---------HHHHHHHHHHHHHHHHHHHHHhhhhhh------
Q 046008 939 AQLGLELTVLNSDCPLYDIVSG---------QKVPANV---------DEALEAEFNSLLDDMVLLVAQKGEHAM------ 994 (1624)
Q Consensus 939 keLGLel~~l~~~~~~yd~~~G---------k~vp~~l---------~~~l~~~~~slld~l~~~~~~~g~~a~------ 994 (1624)
++.|+.+..-. .+..+..+.+ ...+... +......|..++.++...+.+....++
T Consensus 85 ~r~gl~l~~r~-p~sft~~~~~~lp~~lllg~dm~~n~~~i~kfs~~da~~~peye~fl~~~~~~~~pl~d~~~~~~~~~ 163 (561)
T KOG4254|consen 85 KRHGLRLHERS-PCSFTPSLMGYLPEGLLLGRDMAENQKEIAKFSQPDARAYPEYEKFLVELYGAIDPLLDAAPADPPLF 163 (561)
T ss_pred hhhhhhhccCC-CccccchhhccchhhhhhccccccchhhhhhhcCCccccchhHHHHHHHHHhccchhhhccccccchh
Confidence 55555544221 1111111111 1111110 111222333333333322222111111
Q ss_pred -hccHHHHHHHHHHHHHHhhccCCcccccccchhhHh-hcc-cCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcc
Q 046008 995 -KMSLEDGLEYALKRRRMARLGRGREDASMHNSMDVY-SKT-SSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCA 1071 (1624)
Q Consensus 995 -~~sled~Le~~lk~~r~~~~~~~~~~~~~~~a~d~f-s~~-~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~g 1071 (1624)
.-.+...+............. ++..-+..-+.+.+ ... ..+..|+ ..-++...-..+.....+
T Consensus 164 ~~~~l~~~~~~~~~~~pl~l~~-~i~~~~~~~~~~~~~ap~~k~~~~~f--------esk~~ka~l~tDavi~~~----- 229 (561)
T KOG4254|consen 164 IHGLLLVLYTLASTYAPLLLAG-FIKMKPLGALYELLLAPISKVLNDWF--------ESKDLKATLATDAVIGLL----- 229 (561)
T ss_pred hhhhhHHHHHHHHHhhhHHHhh-HhhcCcHHHHHHHHhcchhhHHhhhh--------hccchhhhhhHHHHHHhh-----
Confidence 000000000000000000000 00000000000100 000 0000010 011222222222211111
Q ss_pred cccccccccccccccc---cCCCCCccccccchHHHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEE
Q 046008 1072 ALLKEVSLPFWNQDDV---YGGFGGAHCMIKGGYSTVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVS 1143 (1624)
Q Consensus 1072 a~l~~vSl~~~~~~~~---y~g~~G~~~~VkGGm~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~ 1143 (1624)
+.+......+...... ..+..|.+.++.|||+.|+.++++.+ +|.+++.|.+|..+ ++..+.|.
T Consensus 230 asv~~pgt~yvllh~vlg~~d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd--------~gka~GV~ 301 (561)
T KOG4254|consen 230 ASVHTPGTGYVLLHHVLGELDGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD--------SGKAVGVR 301 (561)
T ss_pred cccCCCCcHHHHHHHHHHhhcccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc--------CCeEEEEE
Confidence 1111111111111111 12355677889999999999999987 89999999999996 56678899
Q ss_pred eCCCcEEEcCEEEEccChhhhhhhcccCCCCCcHHHHHHHHhcCCc-cEEE----EEEEeCCccccCCCcccccc----c
Q 046008 1144 TSNGSEFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAIQRLGFG-VLNK----VVLEFAEVFWDDTVDYFGAT----A 1214 (1624)
Q Consensus 1144 TadGeti~AD~VIsAiP~~vLk~~~I~F~P~LP~~k~qAI~~L~yg-~l~K----V~L~F~~~fW~~~~~~fG~~----~ 1214 (1624)
..||+++++..||+++.+..... .+.-...||+.. .|+.+.+. +..| .++..+..- .......++. .
T Consensus 302 L~dG~ev~sk~VvSNAt~~~Tf~-kLlp~e~LPeef--~i~q~d~~spv~k~~~psFl~~~~~~-~~plph~~~~i~~~~ 377 (561)
T KOG4254|consen 302 LADGTEVRSKIVVSNATPWDTFE-KLLPGEALPEEF--VIQQLDTVSPVTKDKLPSFLCLPNTK-SLPLPHHGYTIHYNA 377 (561)
T ss_pred ecCCcEEEeeeeecCCchHHHHH-HhCCCccCCchh--hhhhcccccccccccCcceeecCCCC-CCCCCccceeEEecC
Confidence 99999999999999998876532 233334678776 66777543 2332 344433211 1111111110 0
Q ss_pred c---------------ccCCCCceeEEecc-----ccCCCCcEEEEEEeCccccccCCCC-------HHHHHHHHHHHHH
Q 046008 1215 K---------------ETDLRGRCFMFWNV-----RKTVGAPVLIALVVGKAAVDGQNVS-------PSDHVNHAVMVLR 1267 (1624)
Q Consensus 1215 ~---------------~~~~rg~~~~~~n~-----~ap~G~~vLvayv~G~~A~~~e~lS-------dEElie~aL~~L~ 1267 (1624)
+ ....++.+++.++. -+|+|.+++..|+.+.. ..|+... .++..+++++.+.
T Consensus 378 ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~lDptlappg~Hvl~lf~~~t~-~~w~g~~~~eye~~K~~~ae~~~~~ie 456 (561)
T KOG4254|consen 378 EDTQAHHRAVEDPRNGLASHRPVIELSIPSSLDPTLAPPGKHVLHLFTQYTP-EEWEGGLKGEYETKKEAFAERVFSVIE 456 (561)
T ss_pred chHHHHHHHHhChhhcccccCCeEEEecccccCCCcCCCCceEEEEeccCCc-cccccCCcccchHHHHHHHHHHHHHHH
Confidence 0 01224445554443 25678888888776544 5566554 3578889999999
Q ss_pred HHhCCCCCCCCceEE-EeecCCCCCC---cccccccCCC--CCCchhhh-----hCCccCCeEEEecCCccCCCCCcHHH
Q 046008 1268 QIFGAASVPDPVASV-VTDWGRDPFS---YGAYSYVATG--ASGEDYDI-----LGRPVENCLFFAGEATCKEHPDTVGG 1336 (1624)
Q Consensus 1268 kIfG~~~vpdPi~iv-vtrW~~dp~s---~GsYs~~~pG--~~~~~~d~-----L~tPV~grLyFAGEaTs~~~~GtVEG 1336 (1624)
+++|+..-. .+.+. -+.-.+..|. +|.|...+-+ +..-.++. .++|++| ||+||+.+.++ |.|-|
T Consensus 457 ~l~Pgfsss-v~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~-LYlcGs~afPG--gGV~a 532 (561)
T KOG4254|consen 457 KLAPGFSSS-VESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPG-LYLCGSGAFPG--GGVMA 532 (561)
T ss_pred HHcCCccce-EEEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccCCCCCCc-eEEecCCCCCC--CCccc
Confidence 999874211 11111 1222222222 4444321111 11222333 3899999 99999999873 34666
Q ss_pred HHHHHHHHHHHHHHHHc
Q 046008 1337 AMLSGLREAVRIIDILT 1353 (1624)
Q Consensus 1337 Ai~SGiRAA~~IL~~L~ 1353 (1624)
|- |..+|..++....
T Consensus 533 ~a--G~~~A~~a~~~~~ 547 (561)
T KOG4254|consen 533 AA--GRLAAHSAILDRK 547 (561)
T ss_pred cc--hhHHHHHHhhhhh
Confidence 54 9999988887765
No 32
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.77 E-value=9e-18 Score=191.78 Aligned_cols=281 Identities=18% Similarity=0.183 Sum_probs=162.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccc---cCCCccccccceeecc-cccchhhhccCCc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR---TSLSVPVDLGASIITG-VEADVATERRADP 933 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~---~~~g~~~d~Ga~~I~g-~~~~v~~~~~~nP 933 (1624)
+...++|+|||+|++||+|||+|+++ |+|+|||+..++||+.+|.. .+.|+.+|.|.+++.+ .+++
T Consensus 5 ~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpn--------- 74 (447)
T COG2907 5 PHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPN--------- 74 (447)
T ss_pred CCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcch---------
Confidence 45678999999999999999999987 89999999999999999985 3357789999999987 4544
Q ss_pred HHHHHHHhCCceeeecCCCCeeeccCCcccC-----cch----HHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHH
Q 046008 934 SSLVCAQLGLELTVLNSDCPLYDIVSGQKVP-----ANV----DEALEAEFNSLLDDMVLLVAQKGEHAMKMSLEDGLEY 1004 (1624)
Q Consensus 934 l~~LlkeLGLel~~l~~~~~~yd~~~Gk~vp-----~~l----~~~l~~~~~slld~l~~~~~~~g~~a~~~sled~Le~ 1004 (1624)
+..|++++|++...-....++..-..|-.+. ..+ ...+...|..++.++..
T Consensus 75 l~~Lf~~iGv~t~as~Msf~v~~d~gglEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLr-------------------- 134 (447)
T COG2907 75 LTRLFKTIGVDTKASFMSFSVSLDMGGLEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILR-------------------- 134 (447)
T ss_pred HHHHHHHcCCCCcccceeEEEEecCCceeeccCCCccchhhccccccchhHHHHHHHHHH--------------------
Confidence 4469999999766543322222111221111 111 11111112222111111
Q ss_pred HHHHHHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhcccccccccccc---
Q 046008 1005 ALKRRRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKEVSLPF--- 1081 (1624)
Q Consensus 1005 ~lk~~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~vSl~~--- 1081 (1624)
..+...............+.+++... .++ ..|.++++.|....++....... ....+.+
T Consensus 135 ---f~r~~~~~~d~~~~~~~tl~~~L~~~-----~f~--~af~e~~l~P~~aaiwstp~~d~--------~~~pa~~~~~ 196 (447)
T COG2907 135 ---FYRSDLAPSDNAGQGDTTLAQYLKQR-----NFG--RAFVEDFLQPLVAAIWSTPLADA--------SRYPACNFLV 196 (447)
T ss_pred ---HhhhhccchhhhcCCCccHHHHHHhc-----Ccc--HHHHHHhHHHHHHHHhcCcHhhh--------hhhhHHHHHH
Confidence 11100000000000111122222111 010 12344445554444443211110 0000000
Q ss_pred -cc-cccccCCCCCccccccchHHHHHHHHhhhc--cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEE
Q 046008 1082 -WN-QDDVYGGFGGAHCMIKGGYSTVVEALGKEL--LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLI 1157 (1624)
Q Consensus 1082 -~~-~~~~y~g~~G~~~~VkGGm~sLveALAe~L--~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIs 1157 (1624)
+. ....+-.-...++++.||....+++|+..+ +|+++++|.+|.+ -.++|.|+..+|++-++|+||+
T Consensus 197 f~~nhGll~l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~r---------lPdGv~l~~~~G~s~rFD~vVi 267 (447)
T COG2907 197 FTDNHGLLYLPKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRR---------LPDGVVLVNADGESRRFDAVVI 267 (447)
T ss_pred HHhccCceecCCCCceeEcccchHHHHHHHhccccceeecCCceeeeee---------CCCceEEecCCCCccccceeee
Confidence 00 000110011244678999999999999999 5999999999998 4678889888999999999999
Q ss_pred ccChhhhhhhcccCCCCCcHHHHHHHHhcCCccEEEEEEEeC
Q 046008 1158 TVPLGCLKAESIMFSPPLPQWKYSAIQRLGFGVLNKVVLEFA 1199 (1624)
Q Consensus 1158 AiP~~vLk~~~I~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~ 1199 (1624)
++.+.+.. .+ .+.-.++-++.+..+.|.....|+..+.
T Consensus 268 Ath~dqAl--~m--L~e~sp~e~qll~a~~Ys~n~aVlhtd~ 305 (447)
T COG2907 268 ATHPDQAL--AL--LDEPSPEERQLLGALRYSANTAVLHTDA 305 (447)
T ss_pred ecChHHHH--Hh--cCCCCHHHHHHHHhhhhhhceeEEeecc
Confidence 99998543 22 2333445566999999987665555433
No 33
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.45 E-value=6.8e-12 Score=151.66 Aligned_cols=61 Identities=30% Similarity=0.468 Sum_probs=53.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCcc-ccccceeeccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVP-VDLGASIITGVEA 923 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~-~d~Ga~~I~g~~~ 923 (1624)
.+|+|||||++||+||+.|++.|.+|+|+|+++.+||++.+.... +.. .+.|+|+++....
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~-g~~~~~~G~h~f~t~~~ 63 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDE-TILFHQYGPHIFHTNNQ 63 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCC-CceEEeecceeEecCcH
Confidence 589999999999999999999999999999999999999987654 544 4899999986544
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.44 E-value=1.5e-11 Score=151.67 Aligned_cols=252 Identities=14% Similarity=0.085 Sum_probs=139.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccC-------------------CCccccccceeecc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTS-------------------LSVPVDLGASIITG 920 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~-------------------~g~~~d~Ga~~I~g 920 (1624)
..+||||||+|++|+.+|..|+++|++|+++|++++.||+.+|+... ..+.+|++++.+..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~ 82 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMA 82 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeec
Confidence 46899999999999999999999999999999999999999987421 01223444444432
Q ss_pred cccchhhhccCCcHHHHHHHhCCceeeecC-CCCeeec-cCCc--ccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 046008 921 VEADVATERRADPSSLVCAQLGLELTVLNS-DCPLYDI-VSGQ--KVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKM 996 (1624)
Q Consensus 921 ~~~~v~~~~~~nPl~~LlkeLGLel~~l~~-~~~~yd~-~~Gk--~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~ 996 (1624)
. +++..++...|+.....+. -...|.+ .+|+ .+|....+.+...+..++++..
T Consensus 83 ~----------G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~------------- 139 (443)
T PTZ00363 83 S----------GELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNR------------- 139 (443)
T ss_pred C----------ChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHH-------------
Confidence 2 4555677778875543221 1123333 3443 4555444433332222222111
Q ss_pred cHHHHHHHHHHHHHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhh-cccccc
Q 046008 997 SLEDGLEYALKRRRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYG-CAALLK 1075 (1624)
Q Consensus 997 sled~Le~~lk~~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~-~ga~l~ 1075 (1624)
+..++.+... .... + . +.+... .. ...+..+++....+++..+.++...++..... +...+.
T Consensus 140 -l~kfl~~v~~---~~~~-----~---~---~~~~~~-~~-d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa 202 (443)
T PTZ00363 140 -CKNFLQYVSN---YDEN-----D---P---ETHKGL-NL-KTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPA 202 (443)
T ss_pred -HHHHHHHHHh---hccC-----C---h---hhhccc-Cc-ccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCH
Confidence 1111111100 0000 0 0 000000 00 01122235556667777777665444322000 001111
Q ss_pred ccccc----ccccccccCCCCCccccccchHHHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEEeCC
Q 046008 1076 EVSLP----FWNQDDVYGGFGGAHCMIKGGYSTVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSN 1146 (1624)
Q Consensus 1076 ~vSl~----~~~~~~~y~g~~G~~~~VkGGm~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~Tad 1146 (1624)
...+. +......|+. .++.++.||++.|+++|++.+ .++||++|++|.++. ++..+.|++.+
T Consensus 203 ~~tl~ri~~y~~S~~~~g~--~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~-------~g~~~~V~~~~ 273 (443)
T PTZ00363 203 IETVMRIKLYMDSLSRYGK--SPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDE-------NGKVCGVKSEG 273 (443)
T ss_pred HHHHHHHHHHHHHHhhccC--CcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcC-------CCeEEEEEECC
Confidence 11111 1111112221 234667999999999998655 799999999999841 23447899999
Q ss_pred CcEEEcCEEEEccC
Q 046008 1147 GSEFSGDAVLITVP 1160 (1624)
Q Consensus 1147 Geti~AD~VIsAiP 1160 (1624)
|++++|++||+...
T Consensus 274 Ge~i~a~~VV~~~s 287 (443)
T PTZ00363 274 GEVAKCKLVICDPS 287 (443)
T ss_pred CcEEECCEEEECcc
Confidence 99999999999644
No 35
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.34 E-value=6.8e-12 Score=148.44 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=49.6
Q ss_pred CccccccchHHHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccC
Q 046008 1093 GAHCMIKGGYSTVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVP 1160 (1624)
Q Consensus 1093 G~~~~VkGGm~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP 1160 (1624)
|..+......+.|+++|..++ +|+++++|..|.+ ++.+..|.|.+|.+|+||.+|+|+.
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~---------~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEK---------DDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEe---------cCceEEEEcCCCCEEEccEEEEecC
Confidence 344434478899999998766 7999999999998 4568999999999999999999876
No 36
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.23 E-value=7.7e-12 Score=115.83 Aligned_cols=56 Identities=41% Similarity=0.619 Sum_probs=50.9
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccc
Q 046008 866 VIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVE 922 (1624)
Q Consensus 866 IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~ 922 (1624)
|||||++||+||++|+++|++|+|||+++++||++++... .++++|.|++++....
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~ 56 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPD 56 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCC
Confidence 8999999999999999999999999999999999999987 4799999999998753
No 37
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=99.19 E-value=2.2e-12 Score=124.85 Aligned_cols=84 Identities=26% Similarity=0.353 Sum_probs=70.3
Q ss_pred ccceeccCcccccCchhhcchhHHHhcCCCccchhhhhhHHHHhhcCCCccCCcccccCCCCCCCCCCCChhhHHHHHHH
Q 046008 609 AAAVAVGLKARAAGPIERIKFKEILKRRGGLQEYLECRNQILSLWSGDVGRILPLTECGVSDTPLGDEPSRASLIREIYK 688 (1624)
Q Consensus 609 ~aa~~~~l~~~~~~~~e~~~~~~~~~~~~~~~~~l~~rn~~l~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 688 (1624)
..|++.+++++.++++|+..||++..+ ...+.||.|||.||.+|..||...|++++|...-. -.+..++.+||.
T Consensus 3 ~~~~~~~~~~~~l~~~E~~~~~e~~~~-~~p~~Yl~iRn~il~~w~~n~~~~lt~~~~~~~i~-----~~d~~~~~ri~~ 76 (86)
T PF04433_consen 3 IPAHSSWFDPDKLSEIEKQLCPEFFIG-KTPEQYLKIRNTILAEWRKNPNKYLTKTDARKLIK-----GIDVNKIRRIYD 76 (86)
T ss_dssp CHCCHTTTTTTSS-HHHHHHCHHCTTS-CHHHHHHHHHHHHHHHHHHHTTS---HHHHHHHTT-----SSSHHHHHHHHH
T ss_pred CccccCCCCcccCCHHHHHHhHHHhcc-CChHHHHHHHHHHHHHHHHCCCCcccHHHHHHHcc-----ccCHHHHHHHHH
Confidence 568899999999999999999999887 55669999999999999999999999999963222 146779999999
Q ss_pred hhcccCceee
Q 046008 689 FLDQSGYINV 698 (1624)
Q Consensus 689 ~l~~~g~in~ 698 (1624)
||+++|||||
T Consensus 77 FL~~~G~INf 86 (86)
T PF04433_consen 77 FLERWGLINF 86 (86)
T ss_dssp HHHHTTSSSS
T ss_pred HHHHcCccCC
Confidence 9999999998
No 38
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.10 E-value=4.8e-10 Score=140.33 Aligned_cols=59 Identities=29% Similarity=0.346 Sum_probs=50.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccccCCCcccccc-cCCCcccccccee
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQ----GFSVTVLEARNRIGGRVYTDR-TSLSVPVDLGASI 917 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~----g~~v~vlE~~~~~GG~~~s~~-~~~g~~~d~Ga~~ 917 (1624)
...++|+|||||+|||+||++|++. |++|+|||+++.+||++++.. ...|+.++.|...
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~ 83 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM 83 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc
Confidence 3468999999999999999999996 679999999999999998754 2358888888653
No 39
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.07 E-value=5.8e-09 Score=123.22 Aligned_cols=57 Identities=30% Similarity=0.410 Sum_probs=42.8
Q ss_pred cccch---HHHHHHHHhhh-----ccccccceEEEEEecCCCCCCCCCCCcEE-EEeCCCcEEEcCEEEEccChhh
Q 046008 1097 MIKGG---YSTVVEALGKE-----LLIHHNHVVTDISYSFKDSDLSDGQSRVK-VSTSNGSEFSGDAVLITVPLGC 1163 (1624)
Q Consensus 1097 ~VkGG---m~sLveALAe~-----L~IrLNt~VtrI~~~~~~~~~s~~~~~V~-V~TadGeti~AD~VIsAiP~~v 1163 (1624)
.+.+| ...++.+|.+. ++|+++++|++|.+ +++.|. |.|.+|+ ++||+||+|+.+..
T Consensus 138 ~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~---------~~~~v~gv~~~~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 138 FPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDV---------DGGRVTGVRTSDGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp ETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEE---------ETTEEEEEEETTEE-EEECEEEE--GGGH
T ss_pred ccccccccccchhhhhHHHHHHhhhhccccccccchhh---------cccccccccccccc-cccceeEecccccc
Confidence 44555 66677777654 48999999999998 456677 9999996 99999999988753
No 40
>PRK10015 oxidoreductase; Provisional
Probab=98.99 E-value=8.2e-08 Score=118.92 Aligned_cols=38 Identities=42% Similarity=0.545 Sum_probs=35.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
..+||+||||||||++||+.|+++|++|+|+|+.+.+|
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g 41 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG 41 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence 35899999999999999999999999999999988765
No 41
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.98 E-value=9.4e-08 Score=118.37 Aligned_cols=40 Identities=40% Similarity=0.494 Sum_probs=36.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
..+||+||||||||++||+.|+++|++|+|||+...+|..
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k 43 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAK 43 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCc
Confidence 4689999999999999999999999999999998887653
No 42
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.93 E-value=1.2e-07 Score=114.48 Aligned_cols=35 Identities=31% Similarity=0.587 Sum_probs=33.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
+|+||||||+||++|+.|+++|++|+|||++..++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~ 35 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEA 35 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccc
Confidence 69999999999999999999999999999998765
No 43
>PRK09126 hypothetical protein; Provisional
Probab=98.87 E-value=8.2e-08 Score=116.74 Aligned_cols=36 Identities=44% Similarity=0.732 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
.++|+||||||+||++|+.|+++|++|+|||+....
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 478999999999999999999999999999998775
No 44
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.86 E-value=1.4e-08 Score=116.90 Aligned_cols=66 Identities=26% Similarity=0.397 Sum_probs=56.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccC-CCc-cccccceeecccccchh
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTS-LSV-PVDLGASIITGVEADVA 926 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~-~g~-~~d~Ga~~I~g~~~~v~ 926 (1624)
+++++|||||++|+.+|..|++.|++|+|+|+++.+||.+++.... .|. .--.|+|+|+.....++
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vw 68 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVW 68 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHH
Confidence 4689999999999999999999999999999999999999998743 354 34689999998766544
No 45
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.86 E-value=1.9e-07 Score=114.50 Aligned_cols=43 Identities=37% Similarity=0.677 Sum_probs=39.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
..+||+||||||||++||+.|+++|++|+|||+++.+|.....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 4689999999999999999999999999999999999876555
No 46
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.85 E-value=1.1e-07 Score=115.79 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=34.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
....+|+||||||+||++|+.|+++|++|+|+|+.+..
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~ 41 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPP 41 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCc
Confidence 34679999999999999999999999999999998753
No 47
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.82 E-value=8.9e-07 Score=108.21 Aligned_cols=33 Identities=45% Similarity=0.719 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
.++|+||||||+||++|..|+++|++|+|+|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 578999999999999999999999999999997
No 48
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.81 E-value=1.6e-08 Score=124.01 Aligned_cols=39 Identities=41% Similarity=0.664 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
++|+|||||+|||.||+.|++.|++|+|||+.+++|=.+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKi 39 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKI 39 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccce
Confidence 589999999999999999999999999999999986443
No 49
>PRK12831 putative oxidoreductase; Provisional
Probab=98.81 E-value=6.3e-09 Score=129.95 Aligned_cols=109 Identities=24% Similarity=0.326 Sum_probs=87.0
Q ss_pred hhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCCccccCCCCCCcE
Q 046008 786 KESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENHYLRCDIDVKKRI 864 (1624)
Q Consensus 786 ~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 864 (1624)
+..-++.+.+.-..|. +.+|+|+.|..|+ ..| .|..+ +|+.|+.++||++++....+.. +..+.+...++|
T Consensus 72 ~~~a~~~~~~~np~p~-~~grvC~~~~~Ce-~~C-----~r~~~~~~v~I~~l~r~~~~~~~~~~~~-~~~~~~~~~~~V 143 (464)
T PRK12831 72 FEEAAKIIAKYNALPA-VCGRVCPQESQCE-GKC-----VLGIKGEPVAIGKLERFVADWARENGID-LSETEEKKGKKV 143 (464)
T ss_pred HHHHHHHHHHhCCchh-hhhccCCCCCChH-HHh-----cCCCCCCCeehhHHHHHHHHHHHHcCCC-CCCCcCCCCCEE
Confidence 4455566677676776 5679998777787 677 34445 7899999999999987766543 223345678999
Q ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 865 IVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 865 ~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
+|||||++||+||++|++.|++|+|||+.+.+||.+..
T Consensus 144 ~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~ 181 (464)
T PRK12831 144 AVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVY 181 (464)
T ss_pred EEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeee
Confidence 99999999999999999999999999999999999864
No 50
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.80 E-value=4.8e-07 Score=110.91 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=34.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
...++|+||||||+||++|..|+++|++|+|||+++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 34689999999999999999999999999999998764
No 51
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.79 E-value=8.5e-07 Score=108.32 Aligned_cols=32 Identities=44% Similarity=0.690 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
+||+||||||||++||+.|++.|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999986
No 52
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.79 E-value=4.2e-07 Score=110.07 Aligned_cols=34 Identities=32% Similarity=0.614 Sum_probs=31.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEcccccC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQG-FSVTVLEARNRI 896 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g-~~v~vlE~~~~~ 896 (1624)
+|+||||||+||++|+.|+++| ++|+|||+....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence 6999999999999999999999 999999997653
No 53
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.78 E-value=4.5e-07 Score=110.30 Aligned_cols=36 Identities=44% Similarity=0.631 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
.++|+||||||+||++|+.|+++|++|+|+|+.+..
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~ 42 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY 42 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 478999999999999999999999999999997654
No 54
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.77 E-value=6.5e-07 Score=109.26 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~ 895 (1624)
.++|+||||||+||+||+.|+++| ++|+|||+++.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 368999999999999999999996 99999999864
No 55
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.76 E-value=7.4e-09 Score=138.36 Aligned_cols=114 Identities=23% Similarity=0.277 Sum_probs=87.7
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcCChhcccccchhhhhhhhhcCCC----C---cccc
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPLTIEERSESERVQSASCDDAGEN----H---YLRC 856 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l~p~~~~~~~~~~~~~~~~~~~~----~---~~~~ 856 (1624)
+-+..-++.+.+.-..|.+ ++|+|+.+..|+ +.|... -+|+.|..+++|..++....... + ....
T Consensus 230 g~~~~A~~~i~~~np~p~~-~GrVCp~~~~CE-~~C~~~------~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~ 301 (944)
T PRK12779 230 GKHREALELIESCNPLPNV-TGRVCPQELQCQ-GVCTHT------KRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPW 301 (944)
T ss_pred CCHHHHHHHHHHhCChhHH-hcCcCCCccCHH-HhccCC------CcCcchhHHHHHHHHHHHhhchhhhhccccccccc
Confidence 4455566677888877874 569999988898 788543 25889999999999874432211 1 0111
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccccc
Q 046008 857 DIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRT 905 (1624)
Q Consensus 857 ~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~ 905 (1624)
.+...++|+|||||||||+||++|+++||+|+|||+.+++||.++...+
T Consensus 302 ~~~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP 350 (944)
T PRK12779 302 AAAVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIP 350 (944)
T ss_pred ccCCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCC
Confidence 2346899999999999999999999999999999999999999986543
No 56
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.75 E-value=8.8e-07 Score=108.71 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=35.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
++|+|||||++|+++|++|++.|++|+||||++.+|+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~~~a 40 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAAMET 40 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCcCc
Confidence 699999999999999999999999999999988776443
No 57
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.74 E-value=1.4e-08 Score=131.84 Aligned_cols=113 Identities=27% Similarity=0.337 Sum_probs=89.0
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCCccccCCCCCC
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENHYLRCDIDVKK 862 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1624)
+=++.-++.+.+.-..|. ..+|+++.|..|+ +.|. |+.. +|+.|..++||..++....+........+...+
T Consensus 256 g~~~~A~~~~~~~np~p~-~~grvCp~~~~Ce-~~C~-----~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~ 328 (654)
T PRK12769 256 GNIDAAVELSHQTNSLPE-ITGRVCPQDRLCE-GACT-----LRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDK 328 (654)
T ss_pred CCHHHHHHHHHHhCCchh-HhcccCCCCCChH-Hhcc-----CCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCC
Confidence 445556667788788885 4569999888887 6774 3334 789999999999999877654211111234678
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~ 903 (1624)
+|+|||||+|||+||++|++.|++|+|||+.+.+||.++..
T Consensus 329 ~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~g 369 (654)
T PRK12769 329 RVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFG 369 (654)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeec
Confidence 99999999999999999999999999999999999998764
No 58
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.73 E-value=1.4e-08 Score=127.06 Aligned_cols=113 Identities=26% Similarity=0.320 Sum_probs=86.6
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCCccccCCCCCC
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENHYLRCDIDVKK 862 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1624)
+-+..-++.+.+.-..|.+ .+|+|+.|..|+ ..| .|..+ +|+.|+.++||++++....+........+...+
T Consensus 70 g~~~~a~~~~~~~np~~~~-~grvC~~~~~Ce-~~C-----~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~ 142 (467)
T TIGR01318 70 GRIDEAAELSHQTNTLPEI-CGRVCPQDRLCE-GAC-----TLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGK 142 (467)
T ss_pred CCHHHHHHHHHHhCCchHh-hcccCCCCCChH-HhC-----cCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCC
Confidence 3345555667777767744 459998777887 677 34444 789999999999998765442222222234678
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~ 903 (1624)
+|+|||||++||+||++|++.|++|+|||+.+.+||.++..
T Consensus 143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~g 183 (467)
T TIGR01318 143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFG 183 (467)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeec
Confidence 99999999999999999999999999999999999998754
No 59
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.72 E-value=2.1e-06 Score=104.49 Aligned_cols=34 Identities=38% Similarity=0.603 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC---CCcEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQ---GFSVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~---g~~v~vlE~~~ 894 (1624)
.++|+||||||+||++|+.|+++ |++|+|||+..
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 57899999999999999999998 99999999863
No 60
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.71 E-value=5.2e-06 Score=101.57 Aligned_cols=35 Identities=43% Similarity=0.744 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..+|+||||||+||++|+.|++.|++|+|||+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 47899999999999999999999999999999874
No 61
>PRK07588 hypothetical protein; Provisional
Probab=98.71 E-value=6.1e-07 Score=109.39 Aligned_cols=47 Identities=17% Similarity=0.155 Sum_probs=38.3
Q ss_pred HHHhhhccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChh
Q 046008 1107 EALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLG 1162 (1624)
Q Consensus 1107 eALAe~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~ 1162 (1624)
+++..+++|++++.|++|.. .+++|.|++.+|+++.||.||.|-...
T Consensus 111 ~~~~~~v~i~~~~~v~~i~~---------~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 111 TAIDGQVETIFDDSIATIDE---------HRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred HhhhcCeEEEeCCEEeEEEE---------CCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 33434468999999999987 456788999999999999999988764
No 62
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.71 E-value=1.5e-08 Score=136.55 Aligned_cols=112 Identities=21% Similarity=0.247 Sum_probs=87.7
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCCccccCCCCCC
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENHYLRCDIDVKK 862 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1624)
+=+..-++.+.+.-..| -+.+|+++.+..|+ +.|. |+.. +|+.|+.++||++++....+.. ....+...+
T Consensus 361 g~~~~A~~~i~~~np~p-~~~grvCp~~~~Ce-~~C~-----~~~~~~pv~I~~ler~~~d~~~~~~~~--~~~~~~~~~ 431 (1006)
T PRK12775 361 RDFDGALEVIYEASIFP-SICGRVCPQETQCE-AQCI-----IAKKHESVGIGRLERFVGDNARAKPVK--PPRFSKKLG 431 (1006)
T ss_pred CCHHHHHHHHHHhCChH-HHhcCcCCCCCCHH-HhCc-----CCCCCCCeeecHHHHHHHHHHHHcCCC--CCCCCCCCC
Confidence 33455566677777777 66799999888887 6773 3334 7899999999999987655432 122234578
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~ 904 (1624)
+|+|||||||||+||++|+++|++|+|||+.+.+||.++...
T Consensus 432 kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gi 473 (1006)
T PRK12775 432 KVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGI 473 (1006)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccC
Confidence 999999999999999999999999999999999999987644
No 63
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.70 E-value=1.8e-08 Score=133.76 Aligned_cols=112 Identities=22% Similarity=0.306 Sum_probs=81.0
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCC-CCccccCCCCC
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGE-NHYLRCDIDVK 861 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 861 (1624)
+=+..-++.+.+.-..|. +.+|++.- .|+ ..| +|..+ +|+.|+.++|+++++...... ......+....
T Consensus 467 g~~~~A~~vi~~~nPlp~-icGrVC~h--~Ce-~~C-----~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~ 537 (1012)
T TIGR03315 467 KRYLEALEVIYDKNPLPA-ITGTICDH--QCQ-YKC-----TRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSA 537 (1012)
T ss_pred CCHHHHHHHHHHhCChhh-HhhCcCCc--chH-HHh-----cCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCC
Confidence 344455556666666665 56777742 455 455 45555 899999999999987444321 11112223457
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~ 904 (1624)
++|+|||||||||+||++|+++|++|+|||+.+.+||+++...
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~I 580 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNII 580 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecc
Confidence 8999999999999999999999999999999999999986643
No 64
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.69 E-value=3.2e-06 Score=103.64 Aligned_cols=35 Identities=29% Similarity=0.497 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
.++|+||||||+||++|+.|+++|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPL 36 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCc
Confidence 46899999999999999999999999999999874
No 65
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.69 E-value=2.2e-08 Score=124.59 Aligned_cols=117 Identities=26% Similarity=0.253 Sum_probs=91.3
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcCChhcccccchhhhhhhhhcCCCCccccCCCCCCc
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPLTIEERSESERVQSASCDDAGENHYLRCDIDVKKR 863 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1624)
+=+..-++.+.+.-..|.+ .+|+++-+..|+ +.|....+++..-+|+.|..+++|.+++....+......+.+...++
T Consensus 58 g~~~~A~~~~~~~~p~p~~-~grvC~~~~~Ce-~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (449)
T TIGR01316 58 GDFKGAVDIIKTTSLLPAI-CGRVCPQERQCE-GQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKK 135 (449)
T ss_pred CCHHHHHHHHHHhCChhHH-hccCCCCccchH-hhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCE
Confidence 4445556677777777874 569999888898 88876644443348999999999999987665532222233456789
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 864 v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
|+|||||++||+||++|++.|++|+|||+.+.+||.++.
T Consensus 136 V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~ 174 (449)
T TIGR01316 136 VAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTY 174 (449)
T ss_pred EEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeee
Confidence 999999999999999999999999999999999998754
No 66
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.68 E-value=2.9e-08 Score=128.71 Aligned_cols=115 Identities=23% Similarity=0.310 Sum_probs=90.1
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCCccccCCCCCC
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENHYLRCDIDVKK 862 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1624)
+=+..-++.+.+.-..|. +.+|+++.|..|+ +.|. |... +|+.|..++||..++..+.+........+...+
T Consensus 239 g~~~~a~~~~~~~np~p~-~~grvCp~~~~Ce-~~C~-----~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~k 311 (639)
T PRK12809 239 GKIIEAAELCHQTSSLPE-ICGRVCPQDRLCE-GACT-----LKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSE 311 (639)
T ss_pred CCHHHHHHHHHHhCCcch-hhcccCCCCCChH-Hhcc-----CCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCC
Confidence 345556667777776665 6899998888887 6774 3334 788999999999999877654222222234689
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRT 905 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~ 905 (1624)
+|+|||||++||+||++|++.|++|+|||+.+.+||.++....
T Consensus 312 kVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip 354 (639)
T PRK12809 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIP 354 (639)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCC
Confidence 9999999999999999999999999999999999999876543
No 67
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.67 E-value=1.9e-06 Score=105.66 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=39.4
Q ss_pred HHHHHHhh--hccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChh
Q 046008 1104 TVVEALGK--ELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLG 1162 (1624)
Q Consensus 1104 sLveALAe--~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~ 1162 (1624)
.|.+++.+ +++|+++++|+.|.. +++.+.|++.+|++++||.||.|-...
T Consensus 116 ~L~~~~~~~~~v~v~~~~~v~~i~~---------~~~~~~v~~~~g~~~~a~lvIgADG~~ 167 (405)
T PRK08850 116 ALLEQVQKQDNVTLLMPARCQSIAV---------GESEAWLTLDNGQALTAKLVVGADGAN 167 (405)
T ss_pred HHHHHHhcCCCeEEEcCCeeEEEEe---------eCCeEEEEECCCCEEEeCEEEEeCCCC
Confidence 34455543 358999999999987 355788888999999999999998864
No 68
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.67 E-value=4e-06 Score=97.10 Aligned_cols=37 Identities=38% Similarity=0.574 Sum_probs=34.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
++|+|||||++||++|+.|++.|++|+|+|++..++.
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~ 37 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY 37 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence 5899999999999999999999999999999877654
No 69
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.66 E-value=1.2e-06 Score=106.76 Aligned_cols=36 Identities=36% Similarity=0.527 Sum_probs=33.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..++|+||||||+||++|+.|+++|++|+|+|+...
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~ 39 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAP 39 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence 358999999999999999999999999999998753
No 70
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.66 E-value=4e-06 Score=101.38 Aligned_cols=38 Identities=32% Similarity=0.374 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
.++|+|||||+.|+++|++|+++|++|+|+|+....+|
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~~ 40 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQ 40 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCCC
Confidence 57899999999999999999999999999999875543
No 71
>PRK06185 hypothetical protein; Provisional
Probab=98.66 E-value=7e-06 Score=100.57 Aligned_cols=37 Identities=35% Similarity=0.531 Sum_probs=33.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
...++|+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 3568999999999999999999999999999999753
No 72
>PRK07236 hypothetical protein; Provisional
Probab=98.65 E-value=5.8e-06 Score=100.87 Aligned_cols=36 Identities=39% Similarity=0.535 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..++|+||||||+||++|+.|++.|++|+|||+++.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 458999999999999999999999999999999764
No 73
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.64 E-value=3.4e-06 Score=102.52 Aligned_cols=38 Identities=29% Similarity=0.478 Sum_probs=34.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
...+|+||||||+||++|+.|++.|++|+|+|++..+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~ 41 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPR 41 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcc
Confidence 35789999999999999999999999999999987653
No 74
>PRK08013 oxidoreductase; Provisional
Probab=98.63 E-value=5.2e-06 Score=101.86 Aligned_cols=36 Identities=36% Similarity=0.520 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
.++|+||||||+||++|+.|+++|++|+|+|+++.+
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 479999999999999999999999999999998764
No 75
>PRK07045 putative monooxygenase; Reviewed
Probab=98.63 E-value=3.9e-06 Score=102.28 Aligned_cols=37 Identities=35% Similarity=0.470 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
..++|+||||||+||+||+.|+++|++|+|||+++.+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 3578999999999999999999999999999998754
No 76
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.62 E-value=1.1e-05 Score=100.84 Aligned_cols=37 Identities=38% Similarity=0.574 Sum_probs=34.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
....+||+||||||||++||+.|+++|++|+|+|++.
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3567899999999999999999999999999999864
No 77
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.62 E-value=6.7e-06 Score=101.08 Aligned_cols=36 Identities=36% Similarity=0.592 Sum_probs=32.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
++|+||||||||++||+.|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 589999999999999999999999999999976543
No 78
>PRK06184 hypothetical protein; Provisional
Probab=98.61 E-value=9.7e-06 Score=102.51 Aligned_cols=36 Identities=36% Similarity=0.658 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
..+|+||||||+||++|+.|+++|++|+|||+++.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 478999999999999999999999999999998755
No 79
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.61 E-value=9.2e-06 Score=99.75 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=36.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~ 903 (1624)
++|+|||||++||++|++|+++|++|+|||+...+|..+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~~aS~~ 42 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPALETSFA 42 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhhhheec
Confidence 379999999999999999999999999999987666554443
No 80
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.61 E-value=2.2e-08 Score=119.84 Aligned_cols=91 Identities=27% Similarity=0.408 Sum_probs=74.4
Q ss_pred ccccccCCCCccccccCCCcCChhcccccchhhhhhhhhcCCCCccccCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEE
Q 046008 809 GVDVSCDDPSCGMVDGGTVPLTIEERSESERVQSASCDDAGENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVT 888 (1624)
Q Consensus 809 ~~d~~~~~~~c~~v~~~r~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~ 888 (1624)
..|++.-+++|.||||.+ ..+...++-|++........+ +........+.|+|||||+|||+||..|++.|++|+
T Consensus 77 ~~E~aniREqcswvH~~d---AtekA~dllr~avakar~le~--le~~~~~v~~svLVIGGGvAGitAAl~La~~G~~v~ 151 (622)
T COG1148 77 YLEIANIREQCSWVHMDD---ATEKAKDLLRMAVAKARKLEP--LEEIKVEVSKSVLVIGGGVAGITAALELADMGFKVY 151 (622)
T ss_pred HhhhhhHhhcceeeccch---HHHHHHHHHHHHHHHHhhcCC--hhhHHHhhccceEEEcCcHHHHHHHHHHHHcCCeEE
Confidence 457777789999999999 456677778877766555544 333345667899999999999999999999999999
Q ss_pred EEcccccCCCcccccc
Q 046008 889 VLEARNRIGGRVYTDR 904 (1624)
Q Consensus 889 vlE~~~~~GG~~~s~~ 904 (1624)
|+|+++.+||++....
T Consensus 152 LVEKepsiGGrmak~~ 167 (622)
T COG1148 152 LVEKEPSIGGRMAKLN 167 (622)
T ss_pred EEecCCcccccHHhhh
Confidence 9999999999987654
No 81
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.61 E-value=2.7e-07 Score=112.78 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=37.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCCCcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~GG~~~s 902 (1624)
..+|+|||||++|+++|++|+++ |++|+|||+...+|+....
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~ 45 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTG 45 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccc
Confidence 47999999999999999999999 9999999998878765443
No 82
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.61 E-value=4.2e-08 Score=129.93 Aligned_cols=112 Identities=27% Similarity=0.362 Sum_probs=81.1
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCCc-cccCCCCC
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENHY-LRCDIDVK 861 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 861 (1624)
+-+..-++.+.+.-..|. +.+|++.- .|+ ..| +|..+ +|+.|+.++|++++.......... .+..+...
T Consensus 469 g~~~~A~~~I~~~nPlP~-icGrVCph--~Ce-~~C-----~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tg 539 (1019)
T PRK09853 469 GRYAEALELIYQRNALPA-ITGHICDH--QCQ-YNC-----TRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSR 539 (1019)
T ss_pred CCHHHHHHHHHHhCChhh-HhhCcCCc--hhH-HHh-----cCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCC
Confidence 344455556666666666 56777653 454 445 44455 899999999999886444322111 11123568
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~ 904 (1624)
++|+|||||+|||+||++|+++|++|+|||+.+.+||+++...
T Consensus 540 KkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~I 582 (1019)
T PRK09853 540 KKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNII 582 (1019)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeec
Confidence 8999999999999999999999999999999999999987644
No 83
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.61 E-value=6.7e-06 Score=102.93 Aligned_cols=38 Identities=34% Similarity=0.525 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCC
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIG 897 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~G 897 (1624)
....+|+|||||++||++||+|+++ |.+|+|||+.. +|
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~-~g 61 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL-CG 61 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc-cc
Confidence 4457999999999999999999998 89999999854 44
No 84
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.60 E-value=4.9e-07 Score=110.71 Aligned_cols=45 Identities=22% Similarity=0.416 Sum_probs=40.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccccCCCcccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNRIGGRVYTDR 904 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~~GG~~~s~~ 904 (1624)
..+||+|||||+.|+++|+.|++.+ .+|+||||.+.+|-.....+
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~N 48 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNN 48 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCc
Confidence 3689999999999999999999999 99999999999987776644
No 85
>PRK06753 hypothetical protein; Provisional
Probab=98.58 E-value=7.6e-06 Score=99.02 Aligned_cols=36 Identities=47% Similarity=0.668 Sum_probs=33.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
++|+||||||+||++|+.|+++|++|+|||+++.+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~ 36 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK 36 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence 479999999999999999999999999999988653
No 86
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.56 E-value=1.1e-05 Score=97.59 Aligned_cols=39 Identities=44% Similarity=0.618 Sum_probs=35.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
..+++|+|||||++||++||+|+++|++|+|+|+..-.+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCC
Confidence 357899999999999999999999999999999876554
No 87
>PRK06834 hypothetical protein; Provisional
Probab=98.56 E-value=2.5e-05 Score=98.59 Aligned_cols=35 Identities=31% Similarity=0.637 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..+|+||||||+||++|+.|+++|++|+|||+.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47899999999999999999999999999998764
No 88
>PRK06847 hypothetical protein; Provisional
Probab=98.55 E-value=1.2e-05 Score=97.36 Aligned_cols=37 Identities=32% Similarity=0.610 Sum_probs=33.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
..++|+||||||+||++|+.|++.|++|+|||+++.+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~ 39 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW 39 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 3578999999999999999999999999999997653
No 89
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.55 E-value=1.4e-05 Score=97.61 Aligned_cols=33 Identities=36% Similarity=0.517 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
++|+||||||+||++|..|++.|++|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 689999999999999999999999999999864
No 90
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.53 E-value=1.2e-07 Score=125.20 Aligned_cols=115 Identities=23% Similarity=0.315 Sum_probs=85.5
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcCChhcccccchhhhhhhhhcCCCCccccCCCCCCc
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPLTIEERSESERVQSASCDDAGENHYLRCDIDVKKR 863 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (1624)
+=+..-++.+.+.-..|. +.+|+|+.+..|+ ..|....... +|+.|..++++..++.............+...++
T Consensus 359 g~~~~a~~~~~~~~p~p~-~~grvC~~~~~Ce-~~c~~~~~~~---~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~ 433 (752)
T PRK12778 359 GNFLEAAKILKETSALPA-VCGRVCPQEKQCE-SKCIHGKMGE---EAVAIGYLERFVADYERESGNISVPEVAEKNGKK 433 (752)
T ss_pred CCHHHHHHHHHhhCCchh-HhcCcCCCcCchH-HhcccCCCCC---CCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCE
Confidence 334455566677666665 6789998877887 5674443210 4778999999999876544322222223456889
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccc
Q 046008 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 864 v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~ 903 (1624)
|+|||||+|||+||++|+++|++|+|||+.+.+||.++..
T Consensus 434 V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~g 473 (752)
T PRK12778 434 VAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYG 473 (752)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec
Confidence 9999999999999999999999999999999999998753
No 91
>PRK05868 hypothetical protein; Validated
Probab=98.53 E-value=1.2e-05 Score=97.85 Aligned_cols=36 Identities=42% Similarity=0.594 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
+++|+||||||+||++|+.|+++|++|+|||+++.+
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 368999999999999999999999999999998664
No 92
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.53 E-value=1e-07 Score=119.36 Aligned_cols=110 Identities=26% Similarity=0.305 Sum_probs=81.7
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCCccccCCCCCC
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENHYLRCDIDVKK 862 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1624)
+-+..-++.+.+....|.+ .+|+|+-. |+ ..| +|..+ +|+.|..++|+++++........+..+.+...+
T Consensus 74 ~~~~~a~~~~~~~~p~~~~-~g~vC~~~--Ce-~~C-----~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~ 144 (471)
T PRK12810 74 GRWEEAAERLHQTNNFPEF-TGRVCPAP--CE-GAC-----TLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGK 144 (471)
T ss_pred CCHHHHHHHHHHhCChhHH-hcCcCCch--hH-Hhc-----cCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCC
Confidence 3355556667777766764 45887553 55 455 33334 899999999999988665442112223345678
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
+|+|||||++||+||++|++.|++|+|||+.+.+||.++.
T Consensus 145 ~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~ 184 (471)
T PRK12810 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRY 184 (471)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeee
Confidence 9999999999999999999999999999999999998764
No 93
>PRK07538 hypothetical protein; Provisional
Probab=98.53 E-value=1.3e-05 Score=98.90 Aligned_cols=35 Identities=34% Similarity=0.623 Sum_probs=32.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
++|+||||||+||++|+.|+++|++|+|||+++.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 47999999999999999999999999999997654
No 94
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.51 E-value=1.2e-07 Score=104.58 Aligned_cols=69 Identities=25% Similarity=0.540 Sum_probs=54.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHHH
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCAQ 940 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~Llke 940 (1624)
..||+||||||+||+|||||+++|.+|+|||++..+||-++-.- +.|.-. ....|...++++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GG-----------mlf~~i-------Vv~~~a~~iL~e 91 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGG-----------MLFNKI-------VVREEADEILDE 91 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccc-----------ccccee-------eecchHHHHHHH
Confidence 47899999999999999999999999999999999998765422 111110 112677789999
Q ss_pred hCCceee
Q 046008 941 LGLELTV 947 (1624)
Q Consensus 941 LGLel~~ 947 (1624)
+|++...
T Consensus 92 ~gI~ye~ 98 (262)
T COG1635 92 FGIRYEE 98 (262)
T ss_pred hCCccee
Confidence 9998654
No 95
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.51 E-value=1.3e-05 Score=104.78 Aligned_cols=40 Identities=33% Similarity=0.462 Sum_probs=35.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
..+|+|||||++|+++|++|+++|++|+|||+...+|+..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~~ga 299 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGA 299 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCccccC
Confidence 3699999999999999999999999999999987776543
No 96
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.48 E-value=1.9e-07 Score=121.38 Aligned_cols=111 Identities=23% Similarity=0.337 Sum_probs=83.0
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCCccccCCCCCC
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENHYLRCDIDVKK 862 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1624)
+=|..-++.+++.-..|.+. +|+++. .|+ ..| .|..+ +|..|+.+++++.++.............+...+
T Consensus 124 g~~~~a~~~~~~~~p~p~~~-grvC~~--~Ce-~~C-----~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k 194 (652)
T PRK12814 124 GDDREAIRIIKETIPLPGIL-GRICPA--PCE-EAC-----RRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGK 194 (652)
T ss_pred CCHHHHHHHHHhhCCcccee-eCCcCc--hhh-HHH-----cCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCC
Confidence 33555666777777777665 888865 455 445 23334 788899999999987655433222222345678
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~ 903 (1624)
+|+|||||++||+||++|++.|++|+|||+.+++||.++..
T Consensus 195 ~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~g 235 (652)
T PRK12814 195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYG 235 (652)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeec
Confidence 99999999999999999999999999999999999998653
No 97
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.48 E-value=1.8e-07 Score=116.01 Aligned_cols=115 Identities=24% Similarity=0.265 Sum_probs=90.2
Q ss_pred hhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcCChhcccccchhhhhhhhhcCCCCccccCCCCCCcEE
Q 046008 786 KESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPLTIEERSESERVQSASCDDAGENHYLRCDIDVKKRII 865 (1624)
Q Consensus 786 ~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 865 (1624)
...-++.|.+.-..| ..+.|++..+-+|+ +.|.+.. .-.|+.+..+.++..+...+.+............++|+
T Consensus 54 ~~~a~~~i~~tn~~p-~~~gRvcp~~~~ce-g~cv~~~----~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~Va 127 (457)
T COG0493 54 DHEAIKLIHKTNNLP-AITGRVCPLGNLCE-GACVLGI----EELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVA 127 (457)
T ss_pred cHHHHHHHHHhCCCc-cccCccCCCCCcee-eeeeecc----CCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEE
Confidence 334445566655555 66899999988887 8885543 12678899999999988887764323333345679999
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccC
Q 046008 866 VIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTS 906 (1624)
Q Consensus 866 IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~ 906 (1624)
||||||+||+||+.|+++||.|+|||+.+.+||++....+.
T Consensus 128 viGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~ 168 (457)
T COG0493 128 VIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPD 168 (457)
T ss_pred EECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCch
Confidence 99999999999999999999999999999999999987653
No 98
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.46 E-value=1.7e-07 Score=122.89 Aligned_cols=107 Identities=16% Similarity=0.055 Sum_probs=76.3
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcCChhcccccchhhhhhhhhc-----------C---
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPLTIEERSESERVQSASCDDA-----------G--- 849 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l~p~~~~~~~~~~~~~~~~~-----------~--- 849 (1624)
+.+..-...+.+.-..|.++..|+|++ |+ +.| +|..-+|+.|..++++..+..... +
T Consensus 300 g~~~~Al~ii~~~NP~p~~~G~RVCp~---CE-~aC-----~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~ 370 (1028)
T PRK06567 300 GFNLSALAIIVIDNPMVAATGHRICND---CS-KAC-----IYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNP 370 (1028)
T ss_pred CCHHHHHHHHHHhCCChHhhCCccCcc---hH-HHh-----cCCCCCCeehhHHHHHHhhhhhhhccccccccccccccc
Confidence 444555566777777777777799972 76 666 333228999999999887642111 1
Q ss_pred -CCCccccCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 850 -ENHYLRCDIDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 850 -~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
......+.+...++|+|||||||||+||++|++.||+|+|||+....|+.
T Consensus 371 ~~~~~~~~~~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 371 LNIYAPLPKEPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred ccccCCCCCCCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 00111233457899999999999999999999999999999998766554
No 99
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.45 E-value=1.3e-06 Score=105.69 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=33.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
++|+|||||++|+++||+|+++|++|+|||+.+..++
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~~ 37 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHS 37 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCC
Confidence 4899999999999999999999999999999776543
No 100
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.44 E-value=3e-07 Score=116.93 Aligned_cols=108 Identities=23% Similarity=0.354 Sum_probs=81.5
Q ss_pred hhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCCccccCCCCCCcEEEEC
Q 046008 790 VDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENHYLRCDIDVKKRIIVIG 868 (1624)
Q Consensus 790 ~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IiG 868 (1624)
.+.+-++-+-| ..++|+|+. .|+ |.|.+ +.+ .|+-|..+.|...+.....+=-.+.++...+.++|+|||
T Consensus 1722 l~~ll~tnnfp-eftgrvcpa--pce-gactl-----giie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiig 1792 (2142)
T KOG0399|consen 1722 LEQLLETNNFP-EFTGRVCPA--PCE-GACTL-----GIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIG 1792 (2142)
T ss_pred HHHHHhhCCCc-cccCccCCC--CcC-cceee-----ecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEc
Confidence 34555555655 567888864 676 88854 334 677788888887777665553223333346789999999
Q ss_pred CCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccC
Q 046008 869 AGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTS 906 (1624)
Q Consensus 869 aG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~ 906 (1624)
.|||||+||-.|.+.||.|+|+||.+|+||.+....+.
T Consensus 1793 sgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipn 1830 (2142)
T KOG0399|consen 1793 SGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPN 1830 (2142)
T ss_pred cCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCc
Confidence 99999999999999999999999999999999887653
No 101
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.42 E-value=3.1e-05 Score=94.30 Aligned_cols=33 Identities=21% Similarity=0.590 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
.+|+||||||+||++|+.|++.|++|+|||+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence 689999999999999999999999999999865
No 102
>PRK08244 hypothetical protein; Provisional
Probab=98.41 E-value=3e-05 Score=97.89 Aligned_cols=35 Identities=37% Similarity=0.614 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
.++|+||||||+||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 47899999999999999999999999999999765
No 103
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.39 E-value=2.4e-06 Score=94.21 Aligned_cols=39 Identities=51% Similarity=0.785 Sum_probs=32.7
Q ss_pred EEECCCHHHHHHHHHHHHCCCc-EEEEcccccCCCccccc
Q 046008 865 IVIGAGPAGLTAARHLQRQGFS-VTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 865 ~IiGaG~aGl~aA~~L~~~g~~-v~vlE~~~~~GG~~~s~ 903 (1624)
+|||||++||++|++|.+.|.+ |+|||+++.+||.....
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~ 40 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY 40 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe
Confidence 6999999999999999999999 99999999999997753
No 104
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.39 E-value=7.6e-05 Score=95.51 Aligned_cols=38 Identities=34% Similarity=0.697 Sum_probs=35.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
....+|+||||||+||++|+.|++.|++|+|+|+++.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 35689999999999999999999999999999998754
No 105
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.38 E-value=1.9e-05 Score=100.87 Aligned_cols=39 Identities=36% Similarity=0.550 Sum_probs=35.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
...++|+||||||+||++|+.|++.|++|+|||++..++
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 456899999999999999999999999999999987654
No 106
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.37 E-value=6.5e-05 Score=91.74 Aligned_cols=197 Identities=17% Similarity=0.157 Sum_probs=104.4
Q ss_pred HHHHHHhhhccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhhhhhhcccCCCCCcHHHHHHH
Q 046008 1104 TVVEALGKELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCLKAESIMFSPPLPQWKYSAI 1183 (1624)
Q Consensus 1104 sLveALAe~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~vLk~~~I~F~P~LP~~k~qAI 1183 (1624)
.+.+.+.+.-.+++++.|+.|.. .++.+.|++.+|.+++|+.||-+.++... +.
T Consensus 92 ~l~~~~~~~~~~~~~~~V~~i~~---------~~~~~~v~~~~g~~i~a~~VvDa~g~~~~--------~~--------- 145 (374)
T PF05834_consen 92 FLLERAAAGGVIRLNARVTSIEE---------TGDGVLVVLADGRTIRARVVVDARGPSSP--------KA--------- 145 (374)
T ss_pred HHHHHhhhCCeEEEccEEEEEEe---------cCceEEEEECCCCEEEeeEEEECCCcccc--------cc---------
Confidence 34444443336889999999987 35578889999999999999999885421 00
Q ss_pred HhcCCccEEEEEEEeCCccccCC-CccccccccccCCCCceeE-EeccccCCCCcEEEEEEeCccccccCCCCHHHHHHH
Q 046008 1184 QRLGFGVLNKVVLEFAEVFWDDT-VDYFGATAKETDLRGRCFM-FWNVRKTVGAPVLIALVVGKAAVDGQNVSPSDHVNH 1261 (1624)
Q Consensus 1184 ~~L~yg~l~KV~L~F~~~fW~~~-~~~fG~~~~~~~~rg~~~~-~~n~~ap~G~~vLvayv~G~~A~~~e~lSdEElie~ 1261 (1624)
....+-...-+.+.++.+.++.. ..++-+...... .+..|+ ..+.. ++ ..|+-++.- + ....++.+++.+.
T Consensus 146 ~~~~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~-~~~~F~Y~lP~~--~~-~alvE~T~f--s-~~~~~~~~~~~~~ 218 (374)
T PF05834_consen 146 RPLGLQHFYGWEVETDEPVFDPDTATLMDFRVPQSA-DGPSFLYVLPFS--ED-RALVEETSF--S-PRPALPEEELKAR 218 (374)
T ss_pred cccccceeEEEEEeccCCCCCCCceEEEEecccCCC-CCceEEEEEEcC--CC-eEEEEEEEE--c-CCCCCCHHHHHHH
Confidence 01122233344555666633322 222222211110 122222 11221 12 234322210 0 1223678899998
Q ss_pred HHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCCCCCCchhhhhCCccCCeEEEecCCccCCCCCcHHHHHHHH
Q 046008 1262 AVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVATGASGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSG 1341 (1624)
Q Consensus 1262 aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~pG~~~~~~d~L~tPV~grLyFAGEaTs~~~~GtVEGAi~SG 1341 (1624)
+.+.|+. +|-.. ..+...-.+..|-+.+ +. .. ....+++..|++...-++.| ..++...
T Consensus 219 l~~~l~~-~g~~~----~~i~~~E~G~IPm~~~-------~~-------~~-~~~~~v~~iG~agG~v~PsT-GYs~~~~ 277 (374)
T PF05834_consen 219 LRRYLER-LGIDD----YEILEEERGVIPMTTG-------GF-------PP-RFGQRVIRIGTAGGMVKPST-GYSFARI 277 (374)
T ss_pred HHHHHHH-cCCCc----eeEEEeecceeecccC-------CC-------cc-ccCCCeeeEEccccCCCCcc-cHHHHHH
Confidence 8899988 55321 2222222222111110 11 11 11223788888765555543 4578889
Q ss_pred HHHHHHHHHHHcc
Q 046008 1342 LREAVRIIDILTT 1354 (1624)
Q Consensus 1342 iRAA~~IL~~L~~ 1354 (1624)
.+.|..|.+.|..
T Consensus 278 ~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 278 QRQADAIADALAK 290 (374)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998874
No 107
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.35 E-value=3.6e-05 Score=94.52 Aligned_cols=39 Identities=36% Similarity=0.632 Sum_probs=33.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEcccccCCC
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQ-GF-SVTVLEARNRIGG 898 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~-g~-~v~vlE~~~~~GG 898 (1624)
....+|+|||||+.|+++||+|+++ |. +|+|||+.. +|+
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~-~~~ 68 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW-LGG 68 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc-ccC
Confidence 4568999999999999999999995 95 899999975 443
No 108
>PRK07190 hypothetical protein; Provisional
Probab=98.35 E-value=6.6e-05 Score=94.82 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=34.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
...+|+||||||+||++|+.|+++|++|+|+|+.+.+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~ 40 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP 40 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 3479999999999999999999999999999998765
No 109
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.35 E-value=5.5e-07 Score=100.27 Aligned_cols=70 Identities=29% Similarity=0.539 Sum_probs=46.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHH
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCA 939 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~Llk 939 (1624)
...||+||||||+||+||++|++.|++|+|||+...+||.++..- ..|. .+.. ..|...+++
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg----~lf~---~iVV-----------q~~a~~iL~ 77 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGG----MLFN---KIVV-----------QEEADEILD 77 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-C----TT------EEE-----------ETTTHHHHH
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccc----cccc---hhhh-----------hhhHHHHHH
Confidence 358999999999999999999999999999999999998876532 1121 1111 145567999
Q ss_pred HhCCceee
Q 046008 940 QLGLELTV 947 (1624)
Q Consensus 940 eLGLel~~ 947 (1624)
+||+....
T Consensus 78 elgi~y~~ 85 (230)
T PF01946_consen 78 ELGIPYEE 85 (230)
T ss_dssp HHT---EE
T ss_pred hCCceeEE
Confidence 99998764
No 110
>PRK06126 hypothetical protein; Provisional
Probab=98.34 E-value=6.6e-05 Score=95.99 Aligned_cols=36 Identities=28% Similarity=0.637 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
...+|+||||||+||++|+.|+++|++|+|||+++.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 457899999999999999999999999999998753
No 111
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.33 E-value=3.2e-05 Score=96.97 Aligned_cols=42 Identities=29% Similarity=0.427 Sum_probs=39.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~ 901 (1624)
...||+|||||+.|+.+|+.++.+|++|+|+|+++...|...
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence 689999999999999999999999999999999998887643
No 112
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.31 E-value=6.3e-05 Score=95.50 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=37.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
...+||+|||||++|+++|+.|+++|.+|+|+|+.+..+|..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS 45 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS 45 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence 346899999999999999999999999999999987665543
No 113
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.31 E-value=8.1e-07 Score=110.97 Aligned_cols=109 Identities=27% Similarity=0.383 Sum_probs=80.9
Q ss_pred hhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCCccccCCCCCCcE
Q 046008 786 KESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENHYLRCDIDVKKRI 864 (1624)
Q Consensus 786 ~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 864 (1624)
+..-++.+.+....|. +.+|+|+-+..|+ ..|.. +.. .|..+..++++..++....... +....+...++|
T Consensus 72 ~~~a~~~~~~~~p~~~-~~g~vc~~~~~C~-~~C~~-----~~~~~~v~i~~l~~~~~~~~~~~~~~-~~~~~~~~~~~V 143 (457)
T PRK11749 72 LKGAAETILETNPLPA-VCGRVCPQERLCE-GACVR-----GKKGEPVAIGRLERYITDWAMETGWV-LFKRAPKTGKKV 143 (457)
T ss_pred HHHHHHHHHHhCCchh-hhcCcCCCccCHH-HHhcC-----CCCCCCcchHHHHHHHHHHHHhcCCC-CCCCCccCCCcE
Confidence 4445556777777776 5669998777776 45633 222 5677788888887765554432 112334567899
Q ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 865 IVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 865 ~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
+|||||++||+||++|++.|++|+|||+.+.+||.+..
T Consensus 144 vIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~ 181 (457)
T PRK11749 144 AVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRY 181 (457)
T ss_pred EEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeec
Confidence 99999999999999999999999999999999998754
No 114
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.31 E-value=8.1e-07 Score=111.85 Aligned_cols=109 Identities=25% Similarity=0.324 Sum_probs=79.4
Q ss_pred hhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCCccccCCCCCCcE
Q 046008 786 KESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENHYLRCDIDVKKRI 864 (1624)
Q Consensus 786 ~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 864 (1624)
+..-++.+.+.-..|. +.+|+|+. .|+ +.| .|+.. +|..|..++++..++.............+...++|
T Consensus 76 ~~~a~~~~~~~~p~p~-~~grvC~~--~Ce-~~C-----~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V 146 (485)
T TIGR01317 76 WKEALDRLHATNNFPE-FTGRVCPA--PCE-GAC-----TLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKV 146 (485)
T ss_pred HHHHHHHHHhhCCchh-HHhCcCCh--hhH-Hhc-----cCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEE
Confidence 4445556667667776 44587764 354 445 33334 78899999999987755443211222233456899
Q ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccc
Q 046008 865 IVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 865 ~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~ 903 (1624)
+|||||++||+||++|++.|++|+|||+.+++||.++..
T Consensus 147 ~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g 185 (485)
T TIGR01317 147 AVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG 185 (485)
T ss_pred EEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc
Confidence 999999999999999999999999999999999988654
No 115
>PLN02697 lycopene epsilon cyclase
Probab=98.29 E-value=0.00077 Score=85.86 Aligned_cols=35 Identities=34% Similarity=0.598 Sum_probs=32.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
...+||+|||||||||++|+.|++.|++|+|+|+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 44689999999999999999999999999999863
No 116
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.29 E-value=7.4e-05 Score=94.74 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=36.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
...++|+|||||++|+++|+.|+++|.+|+|||+.+..+|.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~Gt 44 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGT 44 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCC
Confidence 45689999999999999999999999999999998654443
No 117
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.27 E-value=0.00015 Score=88.61 Aligned_cols=37 Identities=43% Similarity=0.661 Sum_probs=33.7
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCCCc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIGGR 899 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~GG~ 899 (1624)
||+|||||+|||++|+.|++. |++|+|+|+.+.+||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 699999999999999999997 9999999998876653
No 118
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.24 E-value=0.00012 Score=94.38 Aligned_cols=39 Identities=26% Similarity=0.501 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccccCCCc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNRIGGR 899 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~~GG~ 899 (1624)
..||+|||||+|||+||+.+++.| .+|+|+|+....||.
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~ 43 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH 43 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence 358999999999999999999875 799999998877764
No 119
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.23 E-value=1.6e-06 Score=111.19 Aligned_cols=110 Identities=27% Similarity=0.366 Sum_probs=82.7
Q ss_pred hhhhhhhhhhccccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCCccccCCCCCC
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENHYLRCDIDVKK 862 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 862 (1624)
+=+..-++.+.+.-..|.+ .+|+++. .|+ +.| .|..+ .|+.+..+++++.++....+.. +........+
T Consensus 69 g~~~~a~~~~~~~np~~~~-~grvc~~--~ce-~~C-----~r~~~~~~v~i~~l~r~~~~~~~~~~~~-~~~~~~~~g~ 138 (564)
T PRK12771 69 GDYEYAWRRLTKDNPFPAV-MGRVCYH--PCE-SGC-----NRGQVDDAVGINAVERFLGDYAIANGWK-FPAPAPDTGK 138 (564)
T ss_pred CCHHHHHHHHHHhCCcchH-hhCcCCc--hhH-Hhc-----cCCCCCCCcCHHHHHHHHHHHHHHcCCC-CCCCCCCCCC
Confidence 4455566667777767765 5688854 565 566 34444 7788888999998876654432 2222345788
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~ 903 (1624)
+|+|||||++||+||++|++.|++|+|||+.+.+||.++..
T Consensus 139 ~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g 179 (564)
T PRK12771 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG 179 (564)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec
Confidence 99999999999999999999999999999999999988654
No 120
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.23 E-value=6.7e-06 Score=101.25 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=40.8
Q ss_pred HHHHHHHhhhc---cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChh
Q 046008 1103 STVVEALGKEL---LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLG 1162 (1624)
Q Consensus 1103 ~sLveALAe~L---~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~ 1162 (1624)
..|.+.|.+.+ .|+++++|+.|.. .+++|.|++.+|.++.||.||.|-...
T Consensus 105 ~~l~~~L~~~~~~~~v~~~~~v~~i~~---------~~~~~~v~~~~g~~~~ad~vVgADG~~ 158 (414)
T TIGR03219 105 ADFLDALLKHLPEGIASFGKRATQIEE---------QAEEVQVLFTDGTEYRCDLLIGADGIK 158 (414)
T ss_pred HHHHHHHHHhCCCceEEcCCEEEEEEe---------cCCcEEEEEcCCCEEEeeEEEECCCcc
Confidence 34566666655 5899999999987 355789999999999999999998764
No 121
>PRK06996 hypothetical protein; Provisional
Probab=98.22 E-value=0.00017 Score=88.69 Aligned_cols=37 Identities=35% Similarity=0.638 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC----CcEEEEccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQG----FSVTVLEARNR 895 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g----~~v~vlE~~~~ 895 (1624)
...++|+||||||+|+++|+.|+++| .+|+|+|+.+.
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 45689999999999999999999997 46999999764
No 122
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.22 E-value=1.1e-05 Score=101.63 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=34.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccccCCC
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNRIGG 898 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~~GG 898 (1624)
....+|+|||||+.|+++||+|++.+ .+|+||||.+.+|.
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a~ 84 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFAL 84 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchhh
Confidence 35689999999999999999999974 69999999887653
No 123
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.22 E-value=0.0002 Score=89.23 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=39.6
Q ss_pred HHHHHHhh----hccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChh
Q 046008 1104 TVVEALGK----ELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLG 1162 (1624)
Q Consensus 1104 sLveALAe----~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~ 1162 (1624)
.|.+.+.+ .++|+++++|+.|...... ...+++.|+|++.+|++++||.||.|=...
T Consensus 122 ~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~--~~~~~~~v~v~~~~g~~i~a~llVgADG~~ 182 (437)
T TIGR01989 122 SLYNRLQEYNGDNVKILNPARLISVTIPSKY--PNDNSNWVHITLSDGQVLYTKLLIGADGSN 182 (437)
T ss_pred HHHHHHHhCCCCCeEEecCCeeEEEEecccc--ccCCCCceEEEEcCCCEEEeeEEEEecCCC
Confidence 34454443 3689999999999862100 001346789999999999999999987654
No 124
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.17 E-value=0.00026 Score=92.10 Aligned_cols=39 Identities=23% Similarity=0.419 Sum_probs=35.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
..+||+|||||+.|+++|+.|+++|++|+|+|+.+..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCC
Confidence 458999999999999999999999999999999865555
No 125
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.15 E-value=9.1e-05 Score=95.50 Aligned_cols=39 Identities=28% Similarity=0.481 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CcEEEEcccccCCCc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQG---FSVTVLEARNRIGGR 899 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g---~~v~vlE~~~~~GG~ 899 (1624)
..||+|||||+|||+||..+++.| .+|+|+|+....||.
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~ 46 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSH 46 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCC
Confidence 468999999999999999999998 899999999887774
No 126
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.12 E-value=0.00099 Score=86.84 Aligned_cols=38 Identities=34% Similarity=0.403 Sum_probs=35.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
..||+|||||+|||+||..+++.|.+|+|+|+....||
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 57999999999999999999999999999999886665
No 127
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.07 E-value=2.6e-05 Score=94.22 Aligned_cols=34 Identities=44% Similarity=0.674 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
+||+|||||++|+++|++|+++|++|+|||+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4799999999999999999999999999999764
No 128
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.04 E-value=0.001 Score=85.44 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc-CCCc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR-IGGR 899 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~-~GG~ 899 (1624)
..||+|||||.|||+||+.+ +.|.+|+|+|+... .||.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence 46999999999999999999 89999999999764 4554
No 129
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.04 E-value=4.8e-06 Score=104.52 Aligned_cols=49 Identities=27% Similarity=0.384 Sum_probs=43.4
Q ss_pred cCCCCCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEcccccCCCcccccc
Q 046008 856 CDIDVKKRIIVIGAGPAGLTAARHLQR--QGFSVTVLEARNRIGGRVYTDR 904 (1624)
Q Consensus 856 ~~~~~~~~v~IiGaG~aGl~aA~~L~~--~g~~v~vlE~~~~~GG~~~s~~ 904 (1624)
.+....++|+|||||||||+||++|++ .|++|+|||+.+.+||+++...
T Consensus 21 ~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv 71 (491)
T PLN02852 21 SSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV 71 (491)
T ss_pred CCCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc
Confidence 344567899999999999999999997 7999999999999999988653
No 130
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.04 E-value=0.0012 Score=85.25 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=35.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
..||+|||||+|||+||..+++.|.+|+|+|+....||.
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~ 43 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH 43 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 469999999999999999999999999999998876663
No 131
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.01 E-value=0.00037 Score=89.11 Aligned_cols=39 Identities=33% Similarity=0.376 Sum_probs=34.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
+||+|||||++|+.||+.+++.|.+|+|+|+....+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~ 39 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC 39 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence 589999999999999999999999999999975554443
No 132
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.00 E-value=3e-05 Score=95.57 Aligned_cols=37 Identities=46% Similarity=0.759 Sum_probs=34.3
Q ss_pred EEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccc
Q 046008 865 IVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 865 ~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~ 901 (1624)
+|||||++||+||+.|+++|++|+|||+.+.+|+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~ 37 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLL 37 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccccc
Confidence 6999999999999999999999999999999987643
No 133
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.99 E-value=0.0012 Score=85.53 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccccCCCc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNRIGGR 899 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~~GG~ 899 (1624)
..||+|||||+|||+||..+++.| .+|+|+|+....||.
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~ 44 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSH 44 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCC
Confidence 468999999999999999999874 799999998887773
No 134
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=97.97 E-value=6.8e-06 Score=102.90 Aligned_cols=45 Identities=42% Similarity=0.649 Sum_probs=41.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~ 903 (1624)
...++|+|||||++||+||++|.+.|++|+|||+++.+||.....
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~ 52 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYT 52 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecC
Confidence 346899999999999999999999999999999999999987554
No 135
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.97 E-value=6.8e-05 Score=94.56 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=36.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCCCcc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~GG~~ 900 (1624)
...||+|||||++|+++|+.|++. |.+|+||||.+.+|-..
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a~~s 47 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIES 47 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcchhc
Confidence 457999999999999999999999 89999999977776543
No 136
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.95 E-value=0.0002 Score=90.47 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=34.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCCCcc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~GG~~ 900 (1624)
.||+|||||++|+++|+.|++. |.+|+|||+.+.+|...
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a~~~ 41 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVAAES 41 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcchhhh
Confidence 4799999999999999999997 99999999988776443
No 137
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.95 E-value=0.0029 Score=81.91 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
..||+|||||+|||+||+.+++. .+|+|+|+....||
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence 46899999999999999999986 89999999876555
No 138
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.92 E-value=0.00018 Score=91.01 Aligned_cols=42 Identities=21% Similarity=0.323 Sum_probs=36.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCCCccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~GG~~~ 901 (1624)
...||+|||||+.|+++||+|++. |.+|+||||...+|+...
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~~sS 47 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVALESS 47 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhhhcC
Confidence 457999999999999999999985 789999999887765543
No 139
>PRK13984 putative oxidoreductase; Provisional
Probab=97.88 E-value=1.6e-05 Score=102.84 Aligned_cols=99 Identities=21% Similarity=0.276 Sum_probs=70.6
Q ss_pred cccCCCccccccccccccccCCCCccccccCCCcC-ChhcccccchhhhhhhhhcCCCC-ccccCCCCCCcEEEECCCHH
Q 046008 795 QRVDSDPKASNRLVGVDVSCDDPSCGMVDGGTVPL-TIEERSESERVQSASCDDAGENH-YLRCDIDVKKRIIVIGAGPA 872 (1624)
Q Consensus 795 ~~v~v~~~~~~~~~~~d~~~~~~~c~~v~~~r~~l-~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~IiGaG~a 872 (1624)
+.-.-| .+.+|+++. .|+ +.|.+ ..+ +|..|+.+++++.+......... .........++|+|||||++
T Consensus 224 ~~np~~-~~~g~vC~~--~Ce-~~C~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~a 294 (604)
T PRK13984 224 KTNPLS-MVCGRVCTH--KCE-TVCSI-----GHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPA 294 (604)
T ss_pred hcCCcc-chhhCcCCc--hHH-Hhhcc-----cCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHH
Confidence 333344 345577753 465 55633 334 78889999999988644322111 11223456789999999999
Q ss_pred HHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 873 GLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 873 Gl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
||+||++|+++|++|+|||+.+.+||.++.
T Consensus 295 Gl~aA~~L~~~G~~v~vie~~~~~gG~~~~ 324 (604)
T PRK13984 295 GLSAAYFLATMGYEVTVYESLSKPGGVMRY 324 (604)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCceEee
Confidence 999999999999999999999999998764
No 140
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.88 E-value=0.0026 Score=74.99 Aligned_cols=45 Identities=20% Similarity=0.267 Sum_probs=38.5
Q ss_pred cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhhh
Q 046008 1114 LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGCL 1164 (1624)
Q Consensus 1114 ~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~vL 1164 (1624)
.++-+..|+.|.... ..+..|.|.|.+|..|.|+.+|+|+.+..-
T Consensus 169 i~~dg~~v~~~~~~~------e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~ 213 (399)
T KOG2820|consen 169 IFRDGEKVKFIKFVD------EEGNHVSVQTTDGSIYHAKKIIFTVGAWIN 213 (399)
T ss_pred EEecCcceeeEeecc------CCCceeEEEeccCCeeecceEEEEecHHHH
Confidence 799999999999742 256789999999999999999999998753
No 141
>PRK09897 hypothetical protein; Provisional
Probab=97.85 E-value=0.00014 Score=92.57 Aligned_cols=43 Identities=35% Similarity=0.682 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccccCC-Cccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNRIG-GRVYTD 903 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~~G-G~~~s~ 903 (1624)
+++|+|||||++|+++|..|.+.+ .+|+|||++..+| |+.++.
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~ 46 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSD 46 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecC
Confidence 368999999999999999999875 4899999999988 665553
No 142
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.84 E-value=1.5e-05 Score=92.48 Aligned_cols=41 Identities=39% Similarity=0.727 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
...||+||||||+||+||++|++.|++|+|+|+...+||.+
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 35899999999999999999999999999999999998854
No 143
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.83 E-value=1.7e-05 Score=92.06 Aligned_cols=41 Identities=44% Similarity=0.733 Sum_probs=38.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
...||+|||||++||+||++|+++|++|+|||++..+||.+
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 36899999999999999999999999999999999998754
No 144
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.83 E-value=1.3e-05 Score=99.28 Aligned_cols=46 Identities=48% Similarity=0.720 Sum_probs=42.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRT 905 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~ 905 (1624)
..++|+|||||+|||++|+.|.+.|++|+||||.+.+||.......
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~ 50 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTEN 50 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCc
Confidence 4789999999999999999999999999999999999998776543
No 145
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.81 E-value=2e-05 Score=98.09 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=41.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHH-HHCCCcEEEEcccccCCCccccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHL-QRQGFSVTVLEARNRIGGRVYTDRT 905 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L-~~~g~~v~vlE~~~~~GG~~~s~~~ 905 (1624)
...++|+|||||||||+||++| ++.|++|+|||+.+.+||.++....
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa 84 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA 84 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC
Confidence 4568999999999999999975 4679999999999999999997654
No 146
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.76 E-value=0.00017 Score=89.41 Aligned_cols=247 Identities=17% Similarity=0.161 Sum_probs=115.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccC--------------------CCccccccceeec
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTS--------------------LSVPVDLGASIIT 919 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~--------------------~g~~~d~Ga~~I~ 919 (1624)
..+||+|+|.|+.-...|..|++.|.+|+.+|+++.-||...+.... -.+.+|+-+..+.
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~ 82 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY 82 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh
Confidence 56899999999999999999999999999999999999998887521 0223444444443
Q ss_pred ccccchhhhccCCcHHHHHHHhCCceeeec-CCCCeeeccCC--cccCcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 046008 920 GVEADVATERRADPSSLVCAQLGLELTVLN-SDCPLYDIVSG--QKVPANVDEALEAEFNSLLDDMVLLVAQKGEHAMKM 996 (1624)
Q Consensus 920 g~~~~v~~~~~~nPl~~LlkeLGLel~~l~-~~~~~yd~~~G--k~vp~~l~~~l~~~~~slld~l~~~~~~~g~~a~~~ 996 (1624)
. ..++..++-.-|+.....+ .-...|.+.+| ..+|....+.+...+..++++-
T Consensus 83 a----------~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR-------------- 138 (438)
T PF00996_consen 83 A----------RGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKR-------------- 138 (438)
T ss_dssp T----------TSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHH--------------
T ss_pred c----------cCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHH--------------
Confidence 2 2455566666776443322 11223444455 3566655444433332322221
Q ss_pred cHHHHHHHHHHHHHHhhccCCcccccccchhhHhhcccCCCCCCCCcccchhccCCHHHHHHHHHHHHhhhhhccccccc
Q 046008 997 SLEDGLEYALKRRRMARLGRGREDASMHNSMDVYSKTSSVDSRVPDKDCSREDILSPVERRVMDWHFANLEYGCAALLKE 1076 (1624)
Q Consensus 997 sled~Le~~lk~~r~~~~~~~~~~~~~~~a~d~fs~~~~i~~~~p~~d~l~e~~Lsp~~r~lL~~~~a~ley~~ga~l~~ 1076 (1624)
.+..|+.+.... .... . ......+. ...+..+++..+-+++..+.++...++- +.....+..
T Consensus 139 ~lmkFl~~v~~~---~~~~----~-~~~~~~~~--------~~~~~~e~~~~f~L~~~~~~~i~haiaL--~~~~~~~~~ 200 (438)
T PF00996_consen 139 RLMKFLKFVANY---EEDD----P-STHKGLDP--------EKKTFQELLKKFGLSENLIDFIGHAIAL--SLDDSYLTE 200 (438)
T ss_dssp HHHHHHHHHHHG---CTTB----G-GGSTTG-T--------TTSBHHHHHHHTTS-HHHHHHHHHHTS---SSSSGGGGS
T ss_pred HHHHHHHHHhhc---ccCC----c-chhhcccc--------ccccHHHHHHhcCCCHHHHHHHHHhhhh--ccCcccccc
Confidence 112222221100 0000 0 00000000 0001111222333444444333211110 000000000
Q ss_pred c---cc----cccccccccCCCCCccccccchHHHHHHHHhhhc-----cccccceEEEEEecCCCCCCCCCCCcEEEEe
Q 046008 1077 V---SL----PFWNQDDVYGGFGGAHCMIKGGYSTVVEALGKEL-----LIHHNHVVTDISYSFKDSDLSDGQSRVKVST 1144 (1624)
Q Consensus 1077 v---Sl----~~~~~~~~y~g~~G~~~~VkGGm~sLveALAe~L-----~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~T 1144 (1624)
. .+ .+...-..|+. +++.++..|.+.|++++++-. ...||++|.+|.++. ++..+.|..
T Consensus 201 p~~~~l~ri~~yl~SlgryG~--sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~-------~g~~~gV~s 271 (438)
T PF00996_consen 201 PAREGLERIKLYLSSLGRYGK--SPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDE-------DGKVIGVKS 271 (438)
T ss_dssp BSHHHHHHHHHHHHHHCCCSS--SSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEET-------TTEEEEEEE
T ss_pred cHHHHHHHHHHHHHHHhccCC--CCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeec-------CCeEEEEec
Confidence 0 00 01111123332 256677888999999998744 788999999999841 233344654
Q ss_pred CCCcEEEcCEEEEc
Q 046008 1145 SNGSEFSGDAVLIT 1158 (1624)
Q Consensus 1145 adGeti~AD~VIsA 1158 (1624)
+|++++|++||+.
T Consensus 272 -~ge~v~~k~vI~d 284 (438)
T PF00996_consen 272 -EGEVVKAKKVIGD 284 (438)
T ss_dssp -TTEEEEESEEEEE
T ss_pred -CCEEEEcCEEEEC
Confidence 8899999999964
No 147
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.74 E-value=0.00028 Score=87.31 Aligned_cols=54 Identities=28% Similarity=0.389 Sum_probs=43.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccccCCCcccccc-cCCCcccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQ----GFSVTVLEARNRIGGRVYTDR-TSLSVPVDLG 914 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~----g~~v~vlE~~~~~GG~~~s~~-~~~g~~~d~G 914 (1624)
.+++-|||+|+|+|+||.+|-+- |.+|+|||+.+..||.+.... ...||.+--|
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgG 60 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGG 60 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCC
Confidence 46788999999999999999996 458999999999999987654 2345554444
No 148
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.73 E-value=2.4e-05 Score=92.59 Aligned_cols=35 Identities=46% Similarity=0.731 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
.+|+||||||+||+||+.|+++|++|+|||+++..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 58999999999999999999999999999997654
No 149
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.71 E-value=0.0023 Score=78.09 Aligned_cols=41 Identities=24% Similarity=0.265 Sum_probs=34.4
Q ss_pred ccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccCh
Q 046008 1113 LLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPL 1161 (1624)
Q Consensus 1113 L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~ 1161 (1624)
.+|++++.|..|... ++....|.+.+|.+|.||+||+|+.-
T Consensus 188 ~ei~f~t~VeDi~~~--------~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 188 GEIRFNTEVEDIEIE--------DNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred cEEEeeeEEEEEEec--------CCceEEEEccCCcEEecCEEEEccCc
Confidence 489999999999984 23345688899999999999999874
No 150
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.69 E-value=2.9e-05 Score=98.76 Aligned_cols=44 Identities=45% Similarity=0.732 Sum_probs=36.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~ 904 (1624)
.++|+|||||++||+||..|.+.|++|++||+++.+||.-+...
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~ 44 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTE 44 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHST
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCC
Confidence 37999999999999999999999999999999999999986543
No 151
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.69 E-value=3.3e-05 Score=96.64 Aligned_cols=42 Identities=36% Similarity=0.561 Sum_probs=39.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
.++|+|||||++|++||++|+++|++|+|+|+.+.+||.+..
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~ 46 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH 46 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence 589999999999999999999999999999999999998643
No 152
>PLN02661 Putative thiazole synthesis
Probab=97.67 E-value=5.9e-05 Score=90.68 Aligned_cols=43 Identities=28% Similarity=0.580 Sum_probs=38.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccccCCCccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQ-GFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~vlE~~~~~GG~~~ 901 (1624)
....||+|||||++||+||++|++. |++|+|+|+...+||...
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~ 133 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAW 133 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccccee
Confidence 3467999999999999999999986 899999999999988544
No 153
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.64 E-value=5.6e-05 Score=94.40 Aligned_cols=48 Identities=31% Similarity=0.599 Sum_probs=43.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccccCCCccccccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFS-VTVLEARNRIGGRVYTDRT 905 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~-v~vlE~~~~~GG~~~s~~~ 905 (1624)
..+..+|+|||||++||++|++|.++|.. ++||||++++||.-+....
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry 53 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRY 53 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccC
Confidence 35678999999999999999999999999 9999999999999777654
No 154
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.63 E-value=4.4e-05 Score=95.90 Aligned_cols=42 Identities=31% Similarity=0.642 Sum_probs=38.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
.+||+||||||||++||.+++++|++|+|+|+++.+||.|..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~ 44 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLN 44 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeecc
Confidence 479999999999999999999999999999988899998643
No 155
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.62 E-value=5.1e-05 Score=88.41 Aligned_cols=40 Identities=43% Similarity=0.656 Sum_probs=36.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
++|+|||||++||+||..|++.|++|+|+|+.+ +||++..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 589999999999999999999999999999876 7887654
No 156
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.62 E-value=4.6e-05 Score=95.12 Aligned_cols=41 Identities=37% Similarity=0.601 Sum_probs=37.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
.+||+||||||+|++||.+++++|++|+|+|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~ 42 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI 42 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence 47999999999999999999999999999998 589998764
No 157
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.60 E-value=5.4e-05 Score=94.62 Aligned_cols=40 Identities=33% Similarity=0.634 Sum_probs=37.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
+||+|||||++|++||++|++.|++|+|+|+ +.+||.+..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~~ 41 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCLN 41 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceee
Confidence 7999999999999999999999999999999 899998753
No 158
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.59 E-value=6e-05 Score=93.68 Aligned_cols=41 Identities=34% Similarity=0.605 Sum_probs=34.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~ 903 (1624)
||+|||||++|++||+.+++.|.+|+|+|+.+.+||.+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~ 41 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSG 41 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGS
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceEC
Confidence 69999999999999999999999999999999999987553
No 159
>PRK10262 thioredoxin reductase; Provisional
Probab=97.58 E-value=7.9e-05 Score=88.76 Aligned_cols=44 Identities=27% Similarity=0.526 Sum_probs=38.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~ 903 (1624)
...++|+|||||||||+||.+|+++|++|+|||+ ..+||.+...
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~~~ 47 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTT 47 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCceecC
Confidence 3578999999999999999999999999999995 4789887654
No 160
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.57 E-value=6.5e-05 Score=94.00 Aligned_cols=41 Identities=29% Similarity=0.592 Sum_probs=37.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
.+||+||||||+|++||..|++.|++|+|+|+ +.+||.|..
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~-~~~GG~c~~ 42 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEA-KKLGGTCVN 42 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEecc-cccccceec
Confidence 58999999999999999999999999999998 578997653
No 161
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.56 E-value=7.2e-05 Score=96.00 Aligned_cols=42 Identities=31% Similarity=0.566 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
..++|+|||||+|||+||.+|+++|++|+|||+ ..+||.+..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~~ 44 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQITI 44 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEEe
Confidence 358999999999999999999999999999998 478998764
No 162
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.56 E-value=6.6e-05 Score=93.44 Aligned_cols=41 Identities=37% Similarity=0.508 Sum_probs=37.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc-CCCccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR-IGGRVY 901 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~-~GG~~~ 901 (1624)
.+||+|||||+||++||.+|++.|++|+|+|+.+. +||.|-
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~ 44 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI 44 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence 58999999999999999999999999999999875 699753
No 163
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.55 E-value=7.3e-05 Score=93.63 Aligned_cols=42 Identities=36% Similarity=0.663 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
..+||+||||||+|++||..|+++|++|+|+|+.. +||.+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 35899999999999999999999999999999876 9997654
No 164
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=97.53 E-value=0.0029 Score=77.27 Aligned_cols=226 Identities=19% Similarity=0.181 Sum_probs=112.4
Q ss_pred CCCccccccchHHHHHHHHhhhc--cccccceEEEEEecCCCCCCCCCCCcEEEEeCC--C-cEEEcCEEEEccChhhhh
Q 046008 1091 FGGAHCMIKGGYSTVVEALGKEL--LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSN--G-SEFSGDAVLITVPLGCLK 1165 (1624)
Q Consensus 1091 ~~G~~~~VkGGm~sLveALAe~L--~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~Tad--G-eti~AD~VIsAiP~~vLk 1165 (1624)
..++.+.++||..+|++.|.+.- +| +|++|+.|.....+ ....+.|++.. + ..-.+|+||+|+|+..-
T Consensus 116 a~~gl~sV~GGN~qI~~~ll~~S~A~v-l~~~Vt~I~~~~~~-----~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~~- 188 (368)
T PF07156_consen 116 ATGGLWSVEGGNWQIFEGLLEASGANV-LNTTVTSITRRSSD-----GYSLYEVTYKSSSGTESDEYDIVVIATPLQQS- 188 (368)
T ss_pred ccCCceEecCCHHHHHHHHHHHccCcE-ecceeEEEEeccCC-----CceeEEEEEecCCCCccccCCEEEECCCcccc-
Confidence 45677899999999999998754 89 99999999432110 11224554443 3 23357999999999521
Q ss_pred hhcc---cCCCCCcHHHHHHHHhcCCccEEEEEEEeCCccccCCCccccccccccCCCCceeEEeccccC-CCCcEEEEE
Q 046008 1166 AESI---MFSPPLPQWKYSAIQRLGFGVLNKVVLEFAEVFWDDTVDYFGATAKETDLRGRCFMFWNVRKT-VGAPVLIAL 1241 (1624)
Q Consensus 1166 ~~~I---~F~P~LP~~k~qAI~~L~yg~l~KV~L~F~~~fW~~~~~~fG~~~~~~~~rg~~~~~~n~~ap-~G~~vLvay 1241 (1624)
...| .|.|++. ...+++.++++.|=..- -...+||+..........+...-+...+ ....++..+
T Consensus 189 ~snI~~~~~~~~i~---------~~~~~Y~~l~vTlv~~~--lnp~yFgl~~~~~~P~~~IlTt~~~~~~~~s~~~~~~~ 257 (368)
T PF07156_consen 189 FSNITFINFDPPID---------IPPRPYVHLHVTLVAGR--LNPSYFGLPPPSKVPLETILTTENPDLPFNSISIVKSV 257 (368)
T ss_pred cCCccccCCCCCCc---------cCCCCcEEEEEEEEecc--CCHhhcCCCCcccCCcceEEEeCCCCCCCccccccccc
Confidence 1123 3444432 11233444444332221 2346888764432111112222111110 000011000
Q ss_pred E--eCccccccCCCCHHHHHHHHHHHHHHHhCCCCCCCCceEEEeecCCCCCCcccccccCC-CCCCchhhhhCCccCCe
Q 046008 1242 V--VGKAAVDGQNVSPSDHVNHAVMVLRQIFGAASVPDPVASVVTDWGRDPFSYGAYSYVAT-GASGEDYDILGRPVENC 1318 (1624)
Q Consensus 1242 v--~G~~A~~~e~lSdEElie~aL~~L~kIfG~~~vpdPi~ivvtrW~~dp~s~GsYs~~~p-G~~~~~~d~L~tPV~gr 1318 (1624)
. ......-|.=.|++.+-+ +.|.+||+.. ..+....|. +|....| ..++.+ .- .+|
T Consensus 258 ~~~~~~~~~vyKIFS~~~Lt~---~~L~~lF~~~-----~~~~~~~W~-------AYP~~~p~~~~~~~---~L--~~g- 316 (368)
T PF07156_consen 258 NRKTPKGEYVYKIFSPEPLTD---EFLSQLFSSY-----SEVKRKEWL-------AYPHYSPPEKFPPF---KL--HDG- 316 (368)
T ss_pred CCCCCCCccEEEecCCCcCCH---HHHHHHhhcc-----CceeeeeEe-------CCCCCCCCCCCCCe---Ee--eCC-
Confidence 0 000000111112222222 2455666542 235667884 4653332 222111 11 124
Q ss_pred EEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHccCCC
Q 046008 1319 LFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTTGND 1357 (1624)
Q Consensus 1319 LyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~~~~~ 1357 (1624)
||..+.-=+ ...+||-+.++|.-+|..+...+....+
T Consensus 317 lyY~n~iE~--~aStME~sai~akNvA~L~~~~~~~~~~ 353 (368)
T PF07156_consen 317 LYYTNAIES--AASTMETSAIAAKNVALLIYDRWNGDTD 353 (368)
T ss_pred eeEchhHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 776665221 2348999999999999999988886433
No 165
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.53 E-value=0.00047 Score=74.17 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=36.4
Q ss_pred HHHHHHHhhhccc-cccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccCh
Q 046008 1103 STVVEALGKELLI-HHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPL 1161 (1624)
Q Consensus 1103 ~sLveALAe~L~I-rLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~ 1161 (1624)
..+.+.+..++.| +...+|+.|.. .++++.|.+.+|..+.||+||+|+..
T Consensus 105 ~~~~~~~~~~i~v~~~~~~V~~i~~---------~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 105 DRLLARLPAGITVRHVRAEVVDIRR---------DDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred HHHHHhhcCCcEEEEEeeEEEEEEE---------cCCcEEEEECCCCEEEeCEEEECCCC
Confidence 3444444444433 35678999988 45668899999999999999999863
No 166
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.52 E-value=8.4e-05 Score=90.74 Aligned_cols=37 Identities=41% Similarity=0.684 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
..+|+||||||+||++|..|++.|++|+|||+++.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 5789999999999999999999999999999987543
No 167
>PRK06116 glutathione reductase; Validated
Probab=97.52 E-value=7.1e-05 Score=93.44 Aligned_cols=41 Identities=34% Similarity=0.635 Sum_probs=37.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
.++|+||||||+|++||.+|+++|++|+|+|+. .+||.|..
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~n 44 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCVN 44 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhhc
Confidence 589999999999999999999999999999985 89997743
No 168
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.51 E-value=9.2e-05 Score=93.09 Aligned_cols=42 Identities=26% Similarity=0.576 Sum_probs=38.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
..+||+|||||++|++||.+|++.|++|+|+|+. .+||.|..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 4689999999999999999999999999999985 88998754
No 169
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.50 E-value=8.5e-05 Score=92.51 Aligned_cols=42 Identities=36% Similarity=0.579 Sum_probs=38.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc-cCCCcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN-RIGGRVYT 902 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~-~~GG~~~s 902 (1624)
.+||+|||||++|++||++|+++|++|+|+|+.+ .+||.+..
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~ 45 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN 45 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence 4899999999999999999999999999999976 47998753
No 170
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.50 E-value=9.5e-05 Score=93.03 Aligned_cols=42 Identities=33% Similarity=0.631 Sum_probs=38.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~ 901 (1624)
..+||+|||||++|++||.+|++.|++|+|+|+.+.+||.|.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 358999999999999999999999999999999888999763
No 171
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.43 E-value=0.00013 Score=89.78 Aligned_cols=36 Identities=36% Similarity=0.644 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
..+|+||||||+||++|+.|+++|++|+|||+.+.+
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 478999999999999999999999999999997654
No 172
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.42 E-value=0.00012 Score=89.21 Aligned_cols=36 Identities=44% Similarity=0.743 Sum_probs=33.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
||+|||||+||+++|+.|++.|++|+|+|+++.+||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 699999999999999999999999999999887765
No 173
>PRK06370 mercuric reductase; Validated
Probab=97.42 E-value=0.00014 Score=91.24 Aligned_cols=40 Identities=35% Similarity=0.515 Sum_probs=36.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~ 901 (1624)
.+||+||||||+|++||.+|++.|++|+|+|+. .+||.|.
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 589999999999999999999999999999985 6777654
No 174
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00014 Score=86.46 Aligned_cols=45 Identities=36% Similarity=0.547 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~ 904 (1624)
..+||+||||||+||+||.|++++|.+++|++....+||.+....
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~ 46 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTT 46 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccce
Confidence 468999999999999999999999999444444577787765544
No 175
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.40 E-value=0.00013 Score=89.42 Aligned_cols=35 Identities=37% Similarity=0.738 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..+|+||||||+||++|+.|+++|++|+|||+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 47899999999999999999999999999999874
No 176
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.39 E-value=0.00015 Score=90.84 Aligned_cols=40 Identities=45% Similarity=0.732 Sum_probs=37.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~ 901 (1624)
.++|+|||||++|++||.+|++.|++|+|+|+ +.+||.+.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 47999999999999999999999999999999 78999764
No 177
>PRK14694 putative mercuric reductase; Provisional
Probab=97.38 E-value=0.00017 Score=90.58 Aligned_cols=42 Identities=36% Similarity=0.527 Sum_probs=38.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~ 901 (1624)
...++|+|||||+||++||.+|++.|.+|+|+|+. .+||.|.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 45789999999999999999999999999999985 7898865
No 178
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.37 E-value=0.00016 Score=90.72 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=35.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~ 901 (1624)
+||+||||||+|++||.+|++.|++|+|+|+.. +||.|-
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 589999999999999999999999999999865 787753
No 179
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.35 E-value=0.00017 Score=90.46 Aligned_cols=41 Identities=32% Similarity=0.562 Sum_probs=37.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
.+||+|||||++|++||.+|+++|++|+|+|+ ..+||.|..
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~-~~~GG~c~~ 44 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEK-KYWGGVCLN 44 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCceec
Confidence 48999999999999999999999999999998 478888744
No 180
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.31 E-value=0.00019 Score=88.38 Aligned_cols=36 Identities=42% Similarity=0.667 Sum_probs=33.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
||+|||+|+|||+||+.|+++|.+|+|+|+....||
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg 36 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGG 36 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccc
Confidence 699999999999999999999999999999999999
No 181
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.31 E-value=0.00019 Score=97.80 Aligned_cols=44 Identities=34% Similarity=0.638 Sum_probs=40.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~ 903 (1624)
..++|+|||||||||+||++|++.|++|+|+|+.+++||+++..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~ 205 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSE 205 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeecc
Confidence 36799999999999999999999999999999999999998653
No 182
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=97.30 E-value=0.00022 Score=86.02 Aligned_cols=36 Identities=36% Similarity=0.702 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
..+|||||||++||++|..|+++|++|+|||++..+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 578999999999999999999999999999997665
No 183
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.29 E-value=0.00028 Score=85.48 Aligned_cols=46 Identities=37% Similarity=0.546 Sum_probs=41.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTD 903 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~ 903 (1624)
+...++|+|||||++||+||.+|++.|++|+|+|+.+.+||.+...
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~ 60 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFG 60 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeec
Confidence 4456899999999999999999999999999999999999987543
No 184
>PRK13748 putative mercuric reductase; Provisional
Probab=97.28 E-value=0.00022 Score=91.52 Aligned_cols=42 Identities=36% Similarity=0.485 Sum_probs=38.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
..++|+|||||++|++||.+|++.|.+|+|+|+. .+||.|..
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n 138 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN 138 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence 3689999999999999999999999999999986 89998753
No 185
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.26 E-value=0.00027 Score=89.97 Aligned_cols=41 Identities=37% Similarity=0.605 Sum_probs=36.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~ 901 (1624)
...++|+|||||+|||+||.+|++.|++|+|+|. ++||++.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 4578999999999999999999999999999974 6899764
No 186
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.25 E-value=0.0015 Score=81.35 Aligned_cols=34 Identities=56% Similarity=0.722 Sum_probs=30.6
Q ss_pred EECCCHHHHHHHHHHHHCCCcEEEEccccc--CCCc
Q 046008 866 VIGAGPAGLTAARHLQRQGFSVTVLEARNR--IGGR 899 (1624)
Q Consensus 866 IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~--~GG~ 899 (1624)
|||+|++||+||+.+++.|.+|+||||.+. .||.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~ 36 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGN 36 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcC
Confidence 899999999999999999999999999874 4553
No 187
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.24 E-value=0.00027 Score=87.97 Aligned_cols=38 Identities=39% Similarity=0.633 Sum_probs=35.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEcccccCCCcc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQG-FSVTVLEARNRIGGRV 900 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g-~~v~vlE~~~~~GG~~ 900 (1624)
||+|||||++||+||+.++++| .+|+|||+.+..||..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence 6999999999999999999999 9999999999988853
No 188
>PRK11445 putative oxidoreductase; Provisional
Probab=97.24 E-value=0.00025 Score=85.83 Aligned_cols=35 Identities=29% Similarity=0.544 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
+++|+|||||||||++|+.|++. ++|+|+|+++.+
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 36899999999999999999999 999999998765
No 189
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.22 E-value=0.00036 Score=88.65 Aligned_cols=41 Identities=34% Similarity=0.544 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
...||+|||||++||+||+.+++.|.+|+|||+...+||..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s 100 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT 100 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence 46799999999999999999999999999999999999853
No 190
>PRK14727 putative mercuric reductase; Provisional
Probab=97.22 E-value=0.00028 Score=89.04 Aligned_cols=43 Identities=30% Similarity=0.533 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
..++|+|||||++|++||+.|++.|.+|+|+|+.+.+||.|..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 4689999999999999999999999999999998899998764
No 191
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.21 E-value=0.00033 Score=89.27 Aligned_cols=41 Identities=34% Similarity=0.624 Sum_probs=36.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~ 901 (1624)
...++|+|||||+|||+||.+|++.|++|+|++. ++||++.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 4568999999999999999999999999999975 4899875
No 192
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.19 E-value=0.00035 Score=86.03 Aligned_cols=38 Identities=39% Similarity=0.472 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
.++|+|||||++|+.||+.|+++|++|+|+|+++..+-
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s 39 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT 39 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence 46899999999999999999999999999999876543
No 193
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.18 E-value=0.00032 Score=89.01 Aligned_cols=40 Identities=28% Similarity=0.555 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc--------cCCCcc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN--------RIGGRV 900 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~--------~~GG~~ 900 (1624)
.+||+||||||+|++||.+|+++|++|+|+|+.. .+||.|
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C 52 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTC 52 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCcccccccccee
Confidence 4799999999999999999999999999999631 478876
No 194
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.16 E-value=0.00035 Score=90.70 Aligned_cols=36 Identities=36% Similarity=0.562 Sum_probs=33.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
.+..+|+||||||+||++|+.|+++|++|+|||+..
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 467899999999999999999999999999999865
No 195
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.14 E-value=0.00043 Score=86.87 Aligned_cols=40 Identities=43% Similarity=0.543 Sum_probs=36.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc--CCCc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR--IGGR 899 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~--~GG~ 899 (1624)
...||+|||||++||+||+.|++.|.+|+|+|+... .||.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGN 44 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcc
Confidence 357999999999999999999999999999999874 5664
No 196
>PTZ00058 glutathione reductase; Provisional
Probab=97.14 E-value=0.00044 Score=88.80 Aligned_cols=44 Identities=32% Similarity=0.517 Sum_probs=39.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
....+||+|||||++|++||..+++.|.+|+|+|+. .+||.|-.
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 346789999999999999999999999999999985 79998644
No 197
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.11 E-value=0.00045 Score=87.05 Aligned_cols=41 Identities=37% Similarity=0.665 Sum_probs=36.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc------cccCCCccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEA------RNRIGGRVY 901 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~------~~~~GG~~~ 901 (1624)
.+||+|||||++|++||.+|++.|.+|+|+|+ ...+||.|.
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~ 50 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL 50 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence 58999999999999999999999999999998 355666653
No 198
>PRK07121 hypothetical protein; Validated
Probab=97.11 E-value=0.00049 Score=87.11 Aligned_cols=41 Identities=34% Similarity=0.455 Sum_probs=38.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
...||+|||||+|||+||+.+++.|.+|+|||+...+||..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGAT 59 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence 36799999999999999999999999999999999988854
No 199
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.08 E-value=0.00053 Score=87.98 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
..++|+|||||+.|+++|+.|+++|++|+|||+.+..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~ 41 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIA 41 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3589999999999999999999999999999996543
No 200
>PLN02985 squalene monooxygenase
Probab=97.07 E-value=0.0006 Score=86.80 Aligned_cols=37 Identities=35% Similarity=0.509 Sum_probs=33.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
...++|+|||||++|+++|+.|+++|++|+|+|+...
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 4567999999999999999999999999999998643
No 201
>PLN02507 glutathione reductase
Probab=97.06 E-value=0.00055 Score=86.87 Aligned_cols=44 Identities=32% Similarity=0.448 Sum_probs=38.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc---------cccCCCcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEA---------RNRIGGRVYT 902 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~---------~~~~GG~~~s 902 (1624)
...+||+|||||++|++||.+|++.|.+|+|+|+ .+.+||.|-.
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 4468999999999999999999999999999996 3567877633
No 202
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.06 E-value=0.00059 Score=88.04 Aligned_cols=43 Identities=35% Similarity=0.567 Sum_probs=39.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
...||+|||||++||+||+.++++|.+|+|||+...+||....
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccce
Confidence 3679999999999999999999999999999999999987643
No 203
>PLN02463 lycopene beta cyclase
Probab=97.05 E-value=0.00062 Score=85.23 Aligned_cols=37 Identities=30% Similarity=0.593 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
....+||+|||||||||++|+.|+++|++|+|+|+++
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 3456899999999999999999999999999999865
No 204
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.01 E-value=0.00067 Score=74.50 Aligned_cols=31 Identities=45% Similarity=0.812 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
||+|||||+|||+||++|++.|++|+|+|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecc
Confidence 6999999999999999999999999999653
No 205
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.01 E-value=0.00058 Score=84.55 Aligned_cols=36 Identities=36% Similarity=0.430 Sum_probs=34.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
+|+|||||++|+.||+.|+++|++|+|||+++.+|-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 799999999999999999999999999999888765
No 206
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.01 E-value=0.00061 Score=87.30 Aligned_cols=40 Identities=33% Similarity=0.441 Sum_probs=35.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc-ccCCCc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR-NRIGGR 899 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~-~~~GG~ 899 (1624)
..+||+|||||+||+.||+.+++.|++|+|+|++ +.+|++
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 3589999999999999999999999999999987 467754
No 207
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.00 E-value=0.00097 Score=63.54 Aligned_cols=35 Identities=37% Similarity=0.593 Sum_probs=33.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
+|+|||||+.|+-+|..|++.|.+|+|+++.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999998876
No 208
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=96.96 E-value=0.00066 Score=81.08 Aligned_cols=46 Identities=33% Similarity=0.630 Sum_probs=39.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC------CCcEEEEcccccCCCcccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQ------GFSVTVLEARNRIGGRVYTDR 904 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~------g~~v~vlE~~~~~GG~~~s~~ 904 (1624)
..-.+|+|||||||||+||.+|.+. -.+|.|+|+...+||++-+..
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa 125 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA 125 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence 3468999999999999999999863 357999999999999987754
No 209
>PTZ00367 squalene epoxidase; Provisional
Probab=96.96 E-value=0.00073 Score=86.84 Aligned_cols=35 Identities=31% Similarity=0.434 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
..++|+||||||+|+++|+.|+++|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 46899999999999999999999999999999864
No 210
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.93 E-value=0.0043 Score=72.38 Aligned_cols=42 Identities=36% Similarity=0.571 Sum_probs=38.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~ 904 (1624)
.|+|||+|+|||+|+..+-..|-.|+|+|+...+||...-..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSiKAs 52 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSIKAS 52 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcceecc
Confidence 599999999999999999999988999999999999855443
No 211
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.92 E-value=0.00083 Score=86.25 Aligned_cols=42 Identities=40% Similarity=0.714 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc--cCCCccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN--RIGGRVY 901 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~--~~GG~~~ 901 (1624)
...||+|||+|+|||+||..+++.|.+|+|||+.+ .+||...
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 35799999999999999999999999999999999 7898653
No 212
>PLN02546 glutathione reductase
Probab=96.91 E-value=0.00086 Score=86.13 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=31.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEA 892 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~ 892 (1624)
...+||+|||||++|+.||..|++.|++|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3458999999999999999999999999999996
No 213
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.89 E-value=0.0009 Score=85.25 Aligned_cols=40 Identities=33% Similarity=0.655 Sum_probs=36.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
...||+||||| +||+||+.+++.|.+|+|||+...+||..
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT 45 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence 36799999999 99999999999999999999999888854
No 214
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.85 E-value=0.0011 Score=83.61 Aligned_cols=41 Identities=39% Similarity=0.624 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
+++|+|||||++|+.||..|+++|++|+|+|+. .+||.|..
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~c~~ 41 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGAAVL 41 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCcccc
Confidence 368999999999999999999999999999985 58888754
No 215
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.84 E-value=0.001 Score=84.14 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=37.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccc--------ccCCCcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQ-GFSVTVLEAR--------NRIGGRVYT 902 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~vlE~~--------~~~GG~~~s 902 (1624)
..+||+|||||++|.+||..+++. |.+|+|+|+. +.+||.|-.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln 53 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN 53 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence 358999999999999999999997 9999999974 578887644
No 216
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.84 E-value=0.001 Score=83.41 Aligned_cols=39 Identities=36% Similarity=0.701 Sum_probs=35.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
+|+|||||++|++||.+|++.|.+|+|+|+. .+||.|-.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~n 40 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCLN 40 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCCC
Confidence 7999999999999999999999999999985 57776643
No 217
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.81 E-value=0.0012 Score=84.93 Aligned_cols=41 Identities=24% Similarity=0.547 Sum_probs=37.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
...+|+|||+|++||+||+.|++.|.+|+|||+...+||.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST 45 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence 36789999999999999999999999999999998888864
No 218
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.80 E-value=0.0012 Score=85.52 Aligned_cols=40 Identities=30% Similarity=0.557 Sum_probs=37.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
...||+|||+|++||+||+.++++|.+|+|||+...+||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCch
Confidence 3579999999999999999999999999999999998884
No 219
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=96.79 E-value=0.0011 Score=86.43 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=33.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQR-QGFSVTVLEARNR 895 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~-~g~~v~vlE~~~~ 895 (1624)
....+|+||||||+||++|+.|++ .|++|+|+|+++.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 346899999999999999999999 5999999998753
No 220
>PRK12839 hypothetical protein; Provisional
Probab=96.75 E-value=0.0016 Score=84.01 Aligned_cols=44 Identities=30% Similarity=0.412 Sum_probs=40.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
....+|+|||+|++||+||+.|++.|.+|+|+|+...+||.+..
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCccccc
Confidence 34689999999999999999999999999999999999997643
No 221
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.75 E-value=0.0015 Score=81.80 Aligned_cols=43 Identities=37% Similarity=0.658 Sum_probs=39.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
..+||+|||||++|.+||.++++.|.+|.|+|+...+||-|--
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 4689999999999999999999999999999998899998754
No 222
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0084 Score=75.72 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=35.1
Q ss_pred cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChh
Q 046008 1114 LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLG 1162 (1624)
Q Consensus 1114 ~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~ 1162 (1624)
.|..|++|+.|... .++.+.|.|..| .+++.+||-++...
T Consensus 203 ~viE~cpV~~i~~~--------~~~~~gVeT~~G-~iet~~~VNaaGvW 242 (856)
T KOG2844|consen 203 LVIENCPVTGLHVE--------TDKFGGVETPHG-SIETECVVNAAGVW 242 (856)
T ss_pred EEEecCCcceEEee--------cCCccceeccCc-ceecceEEechhHH
Confidence 89999999999985 556678999999 89999999998875
No 223
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=96.74 E-value=0.0017 Score=76.73 Aligned_cols=52 Identities=29% Similarity=0.358 Sum_probs=41.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccccCCCcccccc-cCCCccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQ----GFSVTVLEARNRIGGRVYTDR-TSLSVPV 911 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~----g~~v~vlE~~~~~GG~~~s~~-~~~g~~~ 911 (1624)
..+.+-|||||+|||++|.+|-+. |.++.|||.-+..||-+-... +..|+.+
T Consensus 21 dqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~ 77 (587)
T COG4716 21 DQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVV 77 (587)
T ss_pred ccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceee
Confidence 357899999999999999999886 568999999999999876533 3335443
No 224
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.73 E-value=0.021 Score=70.65 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=35.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCCCc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIGGR 899 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~GG~ 899 (1624)
...||++|||||.|.+.++.|++. ..+|.||||.+.++.-
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~E 43 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALE 43 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhh
Confidence 468999999999999999999997 4689999999988644
No 225
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.72 E-value=0.0013 Score=87.57 Aligned_cols=34 Identities=41% Similarity=0.566 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCcEEEEccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNR 895 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~ 895 (1624)
++|+||||||+||+||+.|++. |++|+|||++..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4799999999999999999998 899999999764
No 226
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.71 E-value=0.0015 Score=77.70 Aligned_cols=48 Identities=27% Similarity=0.401 Sum_probs=42.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCCCccccccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIGGRVYTDRT 905 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~GG~~~s~~~ 905 (1624)
....++|+|||+||||+.+|+.|-++ +..|.|+|+.+.++|.++..-.
T Consensus 17 qs~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVA 66 (468)
T KOG1800|consen 17 QSSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVA 66 (468)
T ss_pred ccCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccC
Confidence 34566999999999999999999985 5789999999999999988654
No 227
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=96.70 E-value=0.0014 Score=84.42 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=34.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
||+|||||+|||+||+.+++.|.+|+|+|+....||.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~ 37 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH 37 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence 6999999999999999999999999999998877764
No 228
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=96.70 E-value=0.23 Score=60.89 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=40.5
Q ss_pred HHHHHHHhh----hccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhh
Q 046008 1103 STVVEALGK----ELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGC 1163 (1624)
Q Consensus 1103 ~sLveALAe----~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~v 1163 (1624)
..++.+|++ +++|+++++|+.|.. +++.+.|+|.+|..+.||+||+|+.+..
T Consensus 135 ~~~~~~l~~~~~~G~~i~~~~~V~~i~~---------~~~~~~v~t~~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 135 PQLCRALLAHAGIRLTLHFNTEITSLER---------DGEGWQLLDANGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHHhccCCCcEEEeCCEEEEEEE---------cCCeEEEEeCCCCEEEcCEEEEcCCccc
Confidence 344455544 457999999999987 3456889999997799999999998763
No 229
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.70 E-value=0.0017 Score=83.63 Aligned_cols=41 Identities=32% Similarity=0.564 Sum_probs=37.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~ 901 (1624)
..||+|||+|++|++||+.++++|.+|+|||+...+||.+.
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~ 47 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA 47 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence 57999999999999999999999999999999999888643
No 230
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.68 E-value=0.0017 Score=79.49 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEE-cccccCCCccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVL-EARNRIGGRVYTD 903 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vl-E~~~~~GG~~~s~ 903 (1624)
||+|||||+||..||+.+++.|.+|+|| +..+.+|.+....
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnp 42 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNP 42 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchh
Confidence 6999999999999999999999999999 6666676654443
No 231
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.65 E-value=0.0017 Score=84.70 Aligned_cols=44 Identities=27% Similarity=0.481 Sum_probs=38.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc-ccCCCcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR-NRIGGRVYT 902 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~-~~~GG~~~s 902 (1624)
...+||+|||||++|++||..+++.|.+|+|+|+. ..+||.|-.
T Consensus 114 ~~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 114 DEEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 34689999999999999999999999999999974 478987644
No 232
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.64 E-value=0.0018 Score=83.86 Aligned_cols=39 Identities=28% Similarity=0.411 Sum_probs=35.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
+.||+|||||+|||+||..+++.|.+|+|+|+....||.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 358999999999999999999999999999999887764
No 233
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.62 E-value=0.0018 Score=82.53 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=35.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
++|+|||+|++|++||++|+++|++|+|+|+....||
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~ 37 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF 37 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC
Confidence 5899999999999999999999999999999999886
No 234
>PRK07804 L-aspartate oxidase; Provisional
Probab=96.60 E-value=0.0019 Score=82.90 Aligned_cols=40 Identities=35% Similarity=0.442 Sum_probs=36.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
...||+|||||+|||+||..+++.|.+|+|+|+....||.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~ 54 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS 54 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence 4579999999999999999999999999999999887774
No 235
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=96.59 E-value=0.0015 Score=76.69 Aligned_cols=37 Identities=35% Similarity=0.468 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccccCCC
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQG-FSVTVLEARNRIGG 898 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g-~~v~vlE~~~~~GG 898 (1624)
+||||||+|.+|..+|.+|++.| .+|+|||+......
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~ 38 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPP 38 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTT
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcc
Confidence 58999999999999999999998 69999999766543
No 236
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.58 E-value=0.0021 Score=74.94 Aligned_cols=40 Identities=40% Similarity=0.673 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc--cCCCcc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN--RIGGRV 900 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~--~~GG~~ 900 (1624)
..+|||||||++||.||..|+.+|.+|+|+|+.. .+||++
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 5789999999999999999999999999999875 467764
No 237
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.58 E-value=0.0024 Score=82.69 Aligned_cols=44 Identities=36% Similarity=0.552 Sum_probs=40.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
....+|+|||+|++|++||+.++++|++|+|||+...+||.+..
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCccccc
Confidence 45689999999999999999999999999999999999987643
No 238
>PRK08401 L-aspartate oxidase; Provisional
Probab=96.58 E-value=0.0021 Score=80.98 Aligned_cols=33 Identities=39% Similarity=0.655 Sum_probs=31.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
++|+|||||+|||+||..+++.|.+|+|+|+..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 799999999999999999999999999999964
No 239
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.028 Score=67.97 Aligned_cols=43 Identities=21% Similarity=0.291 Sum_probs=39.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~ 904 (1624)
++|+|+|-|+.=...+..|+..|.+|+.+++++.-||-..+..
T Consensus 5 yDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt 47 (440)
T KOG1439|consen 5 YDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT 47 (440)
T ss_pred eeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee
Confidence 8999999999999999999999999999999999999887753
No 240
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.51 E-value=0.0026 Score=81.97 Aligned_cols=42 Identities=31% Similarity=0.589 Sum_probs=38.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~ 901 (1624)
....||+|||+| +||+||..+++.|.+|+|+|+.+.+||.+.
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~ 55 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence 447899999999 899999999999999999999999999654
No 241
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.50 E-value=0.0033 Score=82.24 Aligned_cols=39 Identities=33% Similarity=0.453 Sum_probs=35.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
...||+|||||+|||+||..+++.|.+|+|+|+...+||
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~ 72 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRR 72 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCc
Confidence 357999999999999999999999999999999877763
No 242
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.50 E-value=0.0025 Score=80.72 Aligned_cols=33 Identities=36% Similarity=0.546 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
.+||+|||||++|+.||+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 479999999999999999999999999999973
No 243
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.47 E-value=0.0027 Score=82.32 Aligned_cols=41 Identities=32% Similarity=0.493 Sum_probs=36.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
...||+|||||+|||+||..+++.|.+|+|+|+....||..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t 51 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT 51 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence 35799999999999999999999999999999987776643
No 244
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.42 E-value=0.0029 Score=82.03 Aligned_cols=39 Identities=31% Similarity=0.405 Sum_probs=36.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
..||+|||||+|||+||..+++.|.+|+|+|+....||.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 579999999999999999999999999999998877764
No 245
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=96.41 E-value=0.0029 Score=82.36 Aligned_cols=40 Identities=28% Similarity=0.351 Sum_probs=36.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
...||+|||||+|||+||+.+++.|.+|+|+|+....||.
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~ 67 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH 67 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence 3579999999999999999999999999999998877764
No 246
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.40 E-value=0.0034 Score=81.20 Aligned_cols=43 Identities=37% Similarity=0.563 Sum_probs=39.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
...+|+|||+|++||+||+.++++|++|+|+|+...+||....
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcccc
Confidence 3579999999999999999999999999999999999997653
No 247
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=96.39 E-value=0.0031 Score=82.37 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=36.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
...||+|||||+|||+||..+++.|.+|+|+|+....||.
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~ 88 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH 88 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence 3579999999999999999999999999999998877764
No 248
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.37 E-value=0.003 Score=78.89 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=34.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
..||+|||+|.|||+||..++ .|.+|+|+||....||.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN 41 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence 469999999999999999985 79999999999887774
No 249
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.37 E-value=0.0032 Score=81.79 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=36.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
...||+|||||+|||+||+.+++.|.+|+|+|+....||.
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~ 50 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH 50 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence 3579999999999999999999999999999998766664
No 250
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.36 E-value=0.0034 Score=79.58 Aligned_cols=37 Identities=43% Similarity=0.568 Sum_probs=34.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
.||+|||||+|||+||+.+++.|. |+|+|+.+..||.
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN 39 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence 589999999999999999999998 9999999877774
No 251
>PRK07395 L-aspartate oxidase; Provisional
Probab=96.35 E-value=0.0035 Score=80.69 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=35.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
....||+|||+|+|||+||+.++ .|.+|+|+|+....||.
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~ 46 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA 46 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence 34679999999999999999997 59999999999888874
No 252
>PLN02815 L-aspartate oxidase
Probab=96.33 E-value=0.0033 Score=81.44 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=35.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
...||+|||||+|||+||..+++.| +|+|+|+....||.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN 66 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence 3569999999999999999999999 99999999988874
No 253
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=96.32 E-value=0.0034 Score=55.64 Aligned_cols=51 Identities=25% Similarity=0.554 Sum_probs=43.6
Q ss_pred HHHHhhhhhcchhhHHHhcccccccccccccc-CchhHHHHHHHHHHHHHHHH
Q 046008 1471 HCVRLLVRVSTDLLAVRLSGIGKTVREKVCVH-TSRDIRAIASQLVSVWLEVF 1522 (1624)
Q Consensus 1471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 1522 (1624)
++|+.|-.++-+...++.+|||++|. ++..| .+++|+.+|++|++.|...+
T Consensus 1 ~iL~~L~~l~it~~~L~~T~IGk~V~-~l~k~~~~~~i~~~A~~Li~~Wk~~v 52 (53)
T PF08711_consen 1 EILKVLEKLPITVELLKSTGIGKAVN-KLRKHSENPEIRKLAKELIKKWKRIV 52 (53)
T ss_dssp HHHHHHHCSS-SHHHHHHHSHHHHHH-HHHHCTS-HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhhcCCCCHHHHHhCChhHHHH-HHHcCCCCHHHHHHHHHHHHHHhHhc
Confidence 35666888888999999999999998 69999 99999999999999998764
No 254
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.28 E-value=0.0037 Score=86.85 Aligned_cols=41 Identities=37% Similarity=0.592 Sum_probs=38.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
...||+|||||.|||+||..+++.|.+|+|+|+...+||..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s 448 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNS 448 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence 45799999999999999999999999999999999999864
No 255
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.26 E-value=0.0037 Score=81.30 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~G 897 (1624)
..||+|||||+|||+||+.+++. |.+|+|+|+....|
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~ 49 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR 49 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence 46999999999999999999998 99999999987643
No 256
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=96.24 E-value=0.004 Score=81.66 Aligned_cols=39 Identities=31% Similarity=0.372 Sum_probs=35.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
..||+|||||+|||.||..+++.|.+|+|+|+....||.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s~ 43 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRSH 43 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 468999999999999999999999999999998876653
No 257
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=96.23 E-value=0.0036 Score=81.36 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=32.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 864 v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
|+|||||+|||+||..+++.|.+|+|+|+...+||
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 79999999999999999999999999999886653
No 258
>PRK08275 putative oxidoreductase; Provisional
Probab=96.13 E-value=0.0049 Score=79.41 Aligned_cols=39 Identities=36% Similarity=0.476 Sum_probs=34.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCCC
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIGG 898 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~GG 898 (1624)
...||+|||||+|||+||..+++. |.+|+|+|+....+|
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~ 48 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRS 48 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence 347999999999999999999987 689999999886433
No 259
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=96.05 E-value=0.006 Score=71.74 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=30.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEA 892 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~ 892 (1624)
+++|+|||||+|||+||..|+++|.++.|+-+
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~ 33 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNR 33 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 58999999999999999999999999998875
No 260
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.05 E-value=0.0065 Score=75.65 Aligned_cols=34 Identities=38% Similarity=0.495 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
.++|+|||||++|++||+.|+++|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 5799999999999999999999999999999853
No 261
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.04 E-value=0.0054 Score=78.22 Aligned_cols=38 Identities=26% Similarity=0.531 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
..||+|||+|.|||+||..+++ |.+|+|+|+....||.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~ 40 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSN 40 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCC
Confidence 4699999999999999999986 8999999999887774
No 262
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=95.99 E-value=0.0062 Score=78.84 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=35.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCCCcc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~GG~~ 900 (1624)
..||+|||||+|||+||..+++. |.+|+|+|+....||..
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 36899999999999999999987 57999999998887743
No 263
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=95.98 E-value=0.006 Score=76.05 Aligned_cols=36 Identities=33% Similarity=0.576 Sum_probs=32.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccccCC
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNRIG 897 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~~G 897 (1624)
++|+|||||++||+||..|++.| ++|+|+|+++.++
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~ 38 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence 47999999999999999999976 5899999998765
No 264
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=95.90 E-value=0.0034 Score=72.54 Aligned_cols=42 Identities=26% Similarity=0.529 Sum_probs=37.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCC------CcEEEEcccccCCCc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQG------FSVTVLEARNRIGGR 899 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g------~~v~vlE~~~~~GG~ 899 (1624)
....++|+|||||+.|..+||||++++ +.|+|||.....||.
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 345699999999999999999999998 889999998888775
No 265
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=95.89 E-value=0.0071 Score=72.27 Aligned_cols=36 Identities=36% Similarity=0.494 Sum_probs=32.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
.....||||||||++|.+.|+.|++.|.+|+|+||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 345678999999999999999999999999999974
No 266
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.89 E-value=0.0074 Score=77.47 Aligned_cols=39 Identities=31% Similarity=0.437 Sum_probs=35.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
...||+|||+|+|||+||+.+++. .+|+|+|+....||.
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS 45 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence 357999999999999999999987 899999999888774
No 267
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=95.89 E-value=0.0076 Score=75.39 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~G 897 (1624)
+++|+|||||++|+.||..|++. +++|+|+|+.+.++
T Consensus 1 m~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~ 39 (438)
T PRK13512 1 MPKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS 39 (438)
T ss_pred CCeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence 35899999999999999999987 67899999988765
No 268
>PRK02106 choline dehydrogenase; Validated
Probab=95.88 E-value=0.0081 Score=77.49 Aligned_cols=35 Identities=40% Similarity=0.539 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQR-QGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~-~g~~v~vlE~~~ 894 (1624)
..+||||||||.+|+.+|.+|++ .|++|+|||+..
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 35899999999999999999999 899999999964
No 269
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=95.86 E-value=0.0076 Score=78.34 Aligned_cols=33 Identities=24% Similarity=0.510 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHH----HCCCcEEEEccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQ----RQGFSVTVLEARNR 895 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~----~~g~~v~vlE~~~~ 895 (1624)
+|+|||||+|||+||..++ ++|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 6999999999999999998 78999999999775
No 270
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.78 E-value=0.0091 Score=72.59 Aligned_cols=41 Identities=44% Similarity=0.818 Sum_probs=39.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVY 901 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~ 901 (1624)
.++|+|||||+.||.+|..|+++|++|+++|+.+++||++.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 68999999999999999999999999999999999998864
No 271
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=95.69 E-value=0.0092 Score=71.33 Aligned_cols=43 Identities=30% Similarity=0.581 Sum_probs=40.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
..+||+|||+||+|-.||...++.|.+...+|++..+||.|--
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn 80 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN 80 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence 5799999999999999999999999999999999999998754
No 272
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.67 E-value=0.011 Score=72.75 Aligned_cols=37 Identities=32% Similarity=0.615 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGF--SVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~--~v~vlE~~~~~G 897 (1624)
.++|+|||||+||++||..|++.|+ +|+|+++.+...
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~ 41 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP 41 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC
Confidence 4689999999999999999999987 699999876543
No 273
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.62 E-value=0.011 Score=75.88 Aligned_cols=43 Identities=30% Similarity=0.429 Sum_probs=38.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
...+|+|||||.|||.||..++.+|.+|+|+|+....||....
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 4679999999999999999999999999999999888865433
No 274
>PRK07846 mycothione reductase; Reviewed
Probab=95.58 E-value=0.011 Score=74.36 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
+||+|||||++|.+||..+ .|.+|.|+|+ +.+||.|-.
T Consensus 2 yD~vVIG~G~~g~~aa~~~--~G~~V~lie~-~~~GGtC~n 39 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF--ADKRIAIVEK-GTFGGTCLN 39 (451)
T ss_pred CCEEEECCCHHHHHHHHHH--CCCeEEEEeC-CCCCCcccC
Confidence 7999999999999998764 6999999997 567887644
No 275
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=95.57 E-value=0.0044 Score=76.26 Aligned_cols=68 Identities=10% Similarity=0.110 Sum_probs=56.5
Q ss_pred chhhhhhhhhhhhccccCCCccccccccccccc---cCCCCccccccCCCcC-Chhc---------ccccchhhhhh-hh
Q 046008 781 NEIRQKESVVDDCQQRVDSDPKASNRLVGVDVS---CDDPSCGMVDGGTVPL-TIEE---------RSESERVQSAS-CD 846 (1624)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~---~~~~~c~~v~~~r~~l-~p~~---------~~~~~~~~~~~-~~ 846 (1624)
.+.+++...++.+++.+++|++.++++.+++.+ ++++.||+|.++|+++ +|.+ ..+.+|+.|++ |+
T Consensus 288 ~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~~~i~~Ci~Cn~~C~ 367 (382)
T cd02931 288 QKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRRGRFKNIRPCISCHDGCL 367 (382)
T ss_pred CCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHcCCcccCcCChhhHHHHh
Confidence 344566667888999999999999999887765 8899999999999999 9998 24568999985 87
Q ss_pred hc
Q 046008 847 DA 848 (1624)
Q Consensus 847 ~~ 848 (1624)
..
T Consensus 368 ~~ 369 (382)
T cd02931 368 GR 369 (382)
T ss_pred hH
Confidence 54
No 276
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.56 E-value=0.011 Score=74.28 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
++||+|||||++|..||.. ..|.+|.|+|+ +.+||.|-.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~-~~~GGtC~n 40 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEK-GTFGGTCLN 40 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeC-CCCCCeeec
Confidence 5899999999999998754 46999999997 678988744
No 277
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=95.52 E-value=0.0036 Score=76.73 Aligned_cols=66 Identities=9% Similarity=0.062 Sum_probs=55.8
Q ss_pred hhhhhhhhhhccccCCCccccccccccccc---cCCCCccccccCCCcC-Chhc---------ccccchhhhhhhhhcC
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVS---CDDPSCGMVDGGTVPL-TIEE---------RSESERVQSASCDDAG 849 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~---~~~~~c~~v~~~r~~l-~p~~---------~~~~~~~~~~~~~~~~ 849 (1624)
++....++.+++.+++|+|+++++..++.+ ++++.||+|.++|++| +|.+ ..+.+|+.|++|....
T Consensus 275 ~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g~~~~i~~Ci~Cn~C~~~~ 353 (370)
T cd02929 275 GHQEPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKIREGRIDDIRECIGCNICISGD 353 (370)
T ss_pred cccHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHHHcCCccccccCCchhhhhccc
Confidence 445567788999999999999999877655 8899999999999999 9998 2356799999997654
No 278
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=95.28 E-value=0.0069 Score=67.13 Aligned_cols=68 Identities=24% Similarity=0.527 Sum_probs=49.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHH
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVC 938 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~Ll 938 (1624)
..+|+|||||-+||+|||+++++ ..+|.|+|..-.+||-.+- |++.|.. .....|..+++
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL-----------GGQLFSA-------MvvRKPAhLFL 137 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL-----------GGQLFSA-------MVVRKPAHLFL 137 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc-----------cchhhhh-------hhhcChHHHHH
Confidence 46899999999999999999976 4679999998777765433 2222211 11125777899
Q ss_pred HHhCCcee
Q 046008 939 AQLGLELT 946 (1624)
Q Consensus 939 keLGLel~ 946 (1624)
+++|++.+
T Consensus 138 ~EigvpYe 145 (328)
T KOG2960|consen 138 QEIGVPYE 145 (328)
T ss_pred HHhCCCcc
Confidence 99998754
No 279
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.20 E-value=0.16 Score=63.56 Aligned_cols=41 Identities=22% Similarity=0.419 Sum_probs=36.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
...+||+|||||..|..||.-.+-+|.+|.++|+.+..-|.
T Consensus 65 ~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 65 THEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred CCcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 34699999999999999999999999999999998876554
No 280
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.16 E-value=0.016 Score=74.08 Aligned_cols=38 Identities=34% Similarity=0.443 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc-CCCc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR-IGGR 899 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~-~GG~ 899 (1624)
...||+|||||+|||+||..++ |.+|+|+|+... .||.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~ 46 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGAS 46 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcc
Confidence 3579999999999999999997 679999999887 3443
No 281
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.14 E-value=0.017 Score=67.98 Aligned_cols=40 Identities=38% Similarity=0.509 Sum_probs=35.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
...|.|||||+||..|||.++++|+.|.|+|-++.-+--.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa 42 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA 42 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence 4569999999999999999999999999999987765333
No 282
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=95.07 E-value=0.021 Score=77.68 Aligned_cols=36 Identities=33% Similarity=0.471 Sum_probs=33.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
...||+|||||.|||+||..+++.|.+|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 357999999999999999999999999999999774
No 283
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=95.04 E-value=0.017 Score=74.17 Aligned_cols=32 Identities=44% Similarity=0.502 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCC-CcEEEEcccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQG-FSVTVLEARN 894 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g-~~v~vlE~~~ 894 (1624)
|+||||||.+|+.+|.+|++.| ++|+|||+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 6899999999999999999998 7999999965
No 284
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=94.96 E-value=0.019 Score=72.22 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=37.2
Q ss_pred cchHHHHHHHHhh--hccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChh
Q 046008 1099 KGGYSTVVEALGK--ELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLG 1162 (1624)
Q Consensus 1099 kGGm~sLveALAe--~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~ 1162 (1624)
+.-+..+....+. +++++.++ |+.|..+. ++....|++.+|++++||.||=|....
T Consensus 153 R~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~-------~g~i~~v~~~~g~~i~ad~~IDASG~~ 210 (454)
T PF04820_consen 153 RAKFDQFLRRHAEERGVEVIEGT-VVDVELDE-------DGRITAVRLDDGRTIEADFFIDASGRR 210 (454)
T ss_dssp HHHHHHHHHHHHHHTT-EEEET--EEEEEE-T-------TSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred HHHHHHHHHHHHhcCCCEEEeCE-EEEEEEcC-------CCCEEEEEECCCCEEEEeEEEECCCcc
Confidence 5556666655543 45777664 77887741 233357999999999999999998864
No 285
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=94.91 E-value=0.025 Score=70.17 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
++|+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 479999999999999999999999999999864
No 286
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.90 E-value=0.023 Score=70.89 Aligned_cols=37 Identities=32% Similarity=0.539 Sum_probs=33.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..+++|+|||||.||+.||..|.+.+++|+|+|+++.
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 4568999999999999999999877899999998775
No 287
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=94.65 E-value=0.036 Score=67.38 Aligned_cols=112 Identities=17% Similarity=0.236 Sum_probs=87.1
Q ss_pred ccccccccccceeccCcccccCchhhcchhHHHhcCCCcc---chhhhhhHHHHhhcCCCccCCcccccCCCCCCCCCCC
Q 046008 601 LTEAENTGAAAVAVGLKARAAGPIERIKFKEILKRRGGLQ---EYLECRNQILSLWSGDVGRILPLTECGVSDTPLGDEP 677 (1624)
Q Consensus 601 ~~~~~~~~~aa~~~~l~~~~~~~~e~~~~~~~~~~~~~~~---~~l~~rn~~l~~w~~~~~~~l~~~~~~~~~~~~~~~~ 677 (1624)
.+|+......-++-=...-++-.+|+..-|+...++.+.+ .|-.-||.+.+-...+|..-|+++.|- |...
T Consensus 46 ~~Q~~piiiPs~a~WFd~SKiHeIE~~snPeFF~~rs~~KTP~vYk~YR~FminsyRL~p~eYLtvTa~R-RNva----- 119 (531)
T COG5259 46 MEQTHPIIIPSYAEWFDGSKIHEIEKRSNPEFFNGRSPSKTPEVYKDYRNFMINSYRLNPNEYLTVTACR-RNVA----- 119 (531)
T ss_pred hccCCceeccchhhhccccccccccccCCchhhcCCCCCCCHHHHHHHHhhccceeecCCcceEEeeeeh-hccc-----
Confidence 4555555666666667777888899999999999986655 899999999999999999999999997 4444
Q ss_pred ChhhHHHHHHHhhcccCceeeecCCCC-ccc--CCCCcchhhHH
Q 046008 678 SRASLIREIYKFLDQSGYINVGIASTK-EKA--DHNAKHSYKLL 718 (1624)
Q Consensus 678 ~~~~l~~~~~~~l~~~g~in~g~~~~k-~~~--~~~~~~~~~~~ 718 (1624)
-+..++-+||+||++.|+||++|-+.- ++. .+..-|++.+.
T Consensus 120 gDV~aivrvHrFLekWGLINYqvdp~trPs~IgPplt~h~q~l~ 163 (531)
T COG5259 120 GDVAAIVRVHRFLEKWGLINYQVDPGTRPSTIGPPLTSHFQDLH 163 (531)
T ss_pred hhHHHHHHHHHHHHHhcceeeccCCCCCccccCCCcchhhHHHh
Confidence 667799999999999999999997543 222 34444555443
No 288
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=94.43 E-value=0.024 Score=71.24 Aligned_cols=88 Identities=22% Similarity=0.329 Sum_probs=74.6
Q ss_pred ceeccCcccccCchhhcchhHHHhcCCCc---cchhhhhhHHHHhhcCCCccCCcccccCCCCCCCCCCCChhhHHHHHH
Q 046008 611 AVAVGLKARAAGPIERIKFKEILKRRGGL---QEYLECRNQILSLWSGDVGRILPLTECGVSDTPLGDEPSRASLIREIY 687 (1624)
Q Consensus 611 a~~~~l~~~~~~~~e~~~~~~~~~~~~~~---~~~l~~rn~~l~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 687 (1624)
..++=.....+.-.|+..+|+.+-++... ..|++-||.|..-...||..-|++++|-. |...+...+.+||
T Consensus 51 s~a~WFd~~~ih~iE~rs~pEFF~gks~sktPe~Y~~yRnfii~tyrlnp~~ylt~ta~rr------nl~gDv~ai~Rvh 124 (506)
T KOG1279|consen 51 SYAAWFDKSDIHDIERRSLPEFFNGKSKSKTPEVYMKYRNFIINTYRLNPQEYLTFTACRR------NLAGDVCAIARVH 124 (506)
T ss_pred cHHhhcChhhhhhHHhccchhhhcCCCCCCCHHHHHHHHHhhhhhhccCcccchhHHHHHh------cccchHHHHHHHH
Confidence 33555667788899999999999998776 69999999999999999999999999973 2224667899999
Q ss_pred HhhcccCceeeecCCCC
Q 046008 688 KFLDQSGYINVGIASTK 704 (1624)
Q Consensus 688 ~~l~~~g~in~g~~~~k 704 (1624)
+|||+.|+|||=+....
T Consensus 125 ~FlE~WGLINy~~d~e~ 141 (506)
T KOG1279|consen 125 AFLEQWGLINYQVDAES 141 (506)
T ss_pred hhHHhhcccccccChhh
Confidence 99999999999887643
No 289
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.024 Score=67.06 Aligned_cols=43 Identities=33% Similarity=0.583 Sum_probs=36.1
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
....++|+||||||||-+||.|.+++|.+.-|+ .+|.||++--
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQvld 250 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQVLD 250 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCeecc
Confidence 356799999999999999999999999987665 3678887643
No 290
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=94.35 E-value=0.036 Score=71.40 Aligned_cols=36 Identities=36% Similarity=0.591 Sum_probs=33.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
....+|+||||+|.+|-+.|..|++.|++|+|||+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCC
Confidence 356799999999999999999999999999999984
No 291
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=94.21 E-value=0.043 Score=64.36 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=39.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccccCCCcccccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQ--GFSVTVLEARNRIGGRVYTDR 904 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~--g~~v~vlE~~~~~GG~~~s~~ 904 (1624)
....+|++|||||+.||+.|+.|.-+ +.+|.|||+...+|=.-...+
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghN 93 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHN 93 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccc
Confidence 45689999999999999999999988 789999999998875544444
No 292
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.18 E-value=0.046 Score=59.05 Aligned_cols=33 Identities=36% Similarity=0.471 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
+|+|||||..|.++|..|+++|++|+|+.+...
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~ 33 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEE 33 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 699999999999999999999999999998763
No 293
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=93.87 E-value=0.049 Score=64.41 Aligned_cols=47 Identities=26% Similarity=0.452 Sum_probs=39.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEccccc---------CCCccccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQ----GFSVTVLEARNR---------IGGRVYTDRT 905 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~----g~~v~vlE~~~~---------~GG~~~s~~~ 905 (1624)
+.+-+|+|||||..|++.|+.|.++ |.+|+|+|+.+. +||.+..+..
T Consensus 84 ~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSl 143 (509)
T KOG2853|consen 84 PYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSL 143 (509)
T ss_pred ccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeeccc
Confidence 4578999999999999999999874 799999999874 4777766654
No 294
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=93.85 E-value=0.016 Score=70.64 Aligned_cols=65 Identities=9% Similarity=-0.009 Sum_probs=55.4
Q ss_pred hhhhhhhhhhhccccCCCccccccccccccc---cCCCCccccccCCCcC-Chhcc---------cccchhhhhh-hhh
Q 046008 783 IRQKESVVDDCQQRVDSDPKASNRLVGVDVS---CDDPSCGMVDGGTVPL-TIEER---------SESERVQSAS-CDD 847 (1624)
Q Consensus 783 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~---~~~~~c~~v~~~r~~l-~p~~~---------~~~~~~~~~~-~~~ 847 (1624)
.+++.+++..++..+.+|+|+++++..++.+ +++|.||||.|+|++| +|.+. .+..||.|++ |..
T Consensus 273 ~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g~~~~~~~~~~~~~~~~~ 351 (363)
T COG1902 273 PGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEGRELEIRPCIYCNQYCLG 351 (363)
T ss_pred cchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcCCCccccccccccchhhh
Confidence 4677889999999999999999999999888 8889999999999999 99992 2577888864 443
No 295
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=93.76 E-value=0.017 Score=70.36 Aligned_cols=67 Identities=19% Similarity=0.113 Sum_probs=56.1
Q ss_pred hhhhhhhhhhhhccccCCCccccccccccccc---cCCCCccccccCCCcC-Chhc---------ccccchhhhhh-hhh
Q 046008 782 EIRQKESVVDDCQQRVDSDPKASNRLVGVDVS---CDDPSCGMVDGGTVPL-TIEE---------RSESERVQSAS-CDD 847 (1624)
Q Consensus 782 ~~~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~---~~~~~c~~v~~~r~~l-~p~~---------~~~~~~~~~~~-~~~ 847 (1624)
+.+++...+..+++.+++||++++++..++.+ ++++.||+|.++|+++ +|.+ ..+.+|+.|+. |+.
T Consensus 260 ~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~g~~~~i~~Ci~cn~~C~~ 339 (353)
T cd02930 260 PRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAAGRADEINTCIACNQACLD 339 (353)
T ss_pred CchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHhCCcccCcCchhhHHHHHH
Confidence 34555667788999999999999999877766 8889999999999999 9998 34578999998 876
Q ss_pred c
Q 046008 848 A 848 (1624)
Q Consensus 848 ~ 848 (1624)
.
T Consensus 340 ~ 340 (353)
T cd02930 340 H 340 (353)
T ss_pred H
Confidence 4
No 296
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=93.54 E-value=0.078 Score=64.95 Aligned_cols=41 Identities=15% Similarity=0.234 Sum_probs=34.2
Q ss_pred hccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccCh
Q 046008 1112 ELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPL 1161 (1624)
Q Consensus 1112 ~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~ 1161 (1624)
+++|++++.|.+|.. ++..+.|++.+|+++.||.||+++..
T Consensus 197 gV~i~~~~~v~~i~~---------~~~~~~v~~~~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 197 GVHLLLKSQLQGLEK---------TDSGIRATLDSGRSIEVDAVIAAAGL 237 (377)
T ss_pred CCEEEECCeEEEEEc---------cCCEEEEEEcCCcEEECCEEEECcCC
Confidence 458999999999986 34467788889999999999999774
No 297
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=93.50 E-value=0.079 Score=65.43 Aligned_cols=38 Identities=29% Similarity=0.541 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
.++|+|||||..|+.+|..|++.|.+|+|+|+.+++.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~ 181 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG 181 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh
Confidence 47899999999999999999999999999998776643
No 298
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.44 E-value=0.073 Score=66.95 Aligned_cols=34 Identities=38% Similarity=0.553 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
+|+|||+|++|++||++|+++|++|+++|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 6999999999999999999999999999987664
No 299
>PLN02785 Protein HOTHEAD
Probab=93.43 E-value=0.07 Score=69.35 Aligned_cols=35 Identities=40% Similarity=0.553 Sum_probs=31.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
...+|+||||||.||+.+|.+|++ +++|+|||+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 346999999999999999999999 69999999854
No 300
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.41 E-value=0.081 Score=66.99 Aligned_cols=36 Identities=33% Similarity=0.489 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..++|+|||+|.+|+.+|..|+++|++|+++|+++.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 457899999999999999999999999999997653
No 301
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=93.38 E-value=0.067 Score=64.96 Aligned_cols=33 Identities=21% Similarity=0.439 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHHHHC---CCcEEEEccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQ---GFSVTVLEARNR 895 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~---g~~v~vlE~~~~ 895 (1624)
+|+|||||+||+.+|..|.++ +++|+|+|+++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 599999999999999999754 689999998765
No 302
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.32 E-value=0.088 Score=65.52 Aligned_cols=39 Identities=28% Similarity=0.627 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccccCCCcc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQ----GFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~----g~~v~vlE~~~~~GG~~ 900 (1624)
+++|+|||||++|+..|..|.+. ++ |.|||.+..+|+-+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~-Isi~e~~~~~G~Gi 43 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGL-ISIFEPRPNFGQGI 43 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCc-eEEeccccccCCCc
Confidence 47899999999999999999986 33 99999999998543
No 303
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=93.23 E-value=0.1 Score=49.87 Aligned_cols=55 Identities=25% Similarity=0.457 Sum_probs=48.0
Q ss_pred HHHHHHHHhhhhhcchhhHHHhccccccccccccccCchhHHHHHHHHHHHHHHHH
Q 046008 1467 QLLRHCVRLLVRVSTDLLAVRLSGIGKTVREKVCVHTSRDIRAIASQLVSVWLEVF 1522 (1624)
Q Consensus 1467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1522 (1624)
.-+..+|+.|--++-+...++..+||++|. ++..|.++.|+.+|+.|++.|...+
T Consensus 21 ~~~~~~L~~L~~~~it~~~L~~T~iG~~V~-~Lrkh~~~~i~~~A~~Lv~~Wk~~v 75 (76)
T cd00183 21 SRLLDLLRLLKKLPLTVEILKETRIGKKVN-SLRKHSNEKIRKLAKALIKSWKKLV 75 (76)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHCCHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 345566777888899999999999999985 5999999999999999999999865
No 304
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=92.87 E-value=0.12 Score=64.62 Aligned_cols=38 Identities=37% Similarity=0.462 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+++.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 194 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP 194 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC
Confidence 36899999999999999999999999999999887643
No 305
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.60 E-value=0.037 Score=67.28 Aligned_cols=53 Identities=11% Similarity=-0.049 Sum_probs=45.0
Q ss_pred chhhhhhhhhhhhccccCCCccccccccccccc---cCCCCccccccCCCcC-Chhc
Q 046008 781 NEIRQKESVVDDCQQRVDSDPKASNRLVGVDVS---CDDPSCGMVDGGTVPL-TIEE 833 (1624)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~---~~~~~c~~v~~~r~~l-~p~~ 833 (1624)
....++...++.+++.+++|||.++++.+++.+ ++++.||+|.++|+++ +|.+
T Consensus 268 ~~~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l 324 (343)
T cd04734 268 MPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHL 324 (343)
T ss_pred CCcchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccH
Confidence 344555567778999999999999999886666 8889999999999999 9998
No 306
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=92.47 E-value=0.14 Score=62.62 Aligned_cols=37 Identities=30% Similarity=0.484 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||+.|+.+|..|++.|.+|+|+++.+++.
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l 177 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL 177 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc
Confidence 4789999999999999999999999999999877654
No 307
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=92.32 E-value=0.15 Score=64.24 Aligned_cols=39 Identities=33% Similarity=0.516 Sum_probs=35.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
...++++|||||+.|+-.|..+++.|.+|+|+|+.+++-
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL 209 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL 209 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 446889999999999999999999999999999987764
No 308
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.30 E-value=0.14 Score=56.67 Aligned_cols=33 Identities=33% Similarity=0.577 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
+|+|||||..|...|..++..|++|++++..+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE 33 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence 589999999999999999999999999997543
No 309
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=92.23 E-value=0.15 Score=64.52 Aligned_cols=36 Identities=42% Similarity=0.636 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i 215 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI 215 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence 369999999999999999999999999999987765
No 310
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=92.18 E-value=0.16 Score=62.97 Aligned_cols=36 Identities=39% Similarity=0.728 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~ 895 (1624)
.+++|+|||||.+||.+|..|.+.- .+|+++|++++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence 4689999999999999999999974 89999999876
No 311
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=0.17 Score=57.02 Aligned_cols=44 Identities=30% Similarity=0.453 Sum_probs=36.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc----ccCCCcccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR----NRIGGRVYTDR 904 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~----~~~GG~~~s~~ 904 (1624)
..+|+|||.|||+-+||.|++++-.+-+|||.- .-+||++.|..
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 358999999999999999999999999999953 23477776643
No 312
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=91.87 E-value=0.19 Score=63.19 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+++.
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 206 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL 206 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC
Confidence 3689999999999999999999999999999987653
No 313
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=91.86 E-value=0.17 Score=68.52 Aligned_cols=37 Identities=32% Similarity=0.508 Sum_probs=32.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQ----GFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~----g~~v~vlE~~~~~G 897 (1624)
+++|+|||||+||+.||..|.+. +++|+||++.++++
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 45899999999999999999764 57999999998875
No 314
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=91.80 E-value=4.6 Score=48.06 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=33.8
Q ss_pred hccccccceEEEEEecCCCCCCCCCCCcE-EEEeCCCcEEEcCEEEEccChhh
Q 046008 1112 ELLIHHNHVVTDISYSFKDSDLSDGQSRV-KVSTSNGSEFSGDAVLITVPLGC 1163 (1624)
Q Consensus 1112 ~L~IrLNt~VtrI~~~~~~~~~s~~~~~V-~V~TadGeti~AD~VIsAiP~~v 1163 (1624)
+.+|+.+++|+.|... ++.+ .|.|.+| ++.||.||+|+.+..
T Consensus 151 g~~~~~~~~v~~i~~~---------~~~~~~v~~~~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 151 GVEIIEHTEVQHIEIR---------GEKVTAIVTPSG-DVQADQVVLAAGAWA 193 (337)
T ss_pred CCEEEccceEEEEEee---------CCEEEEEEcCCC-EEECCEEEEcCChhh
Confidence 3489999999999873 4444 5788777 899999999999864
No 315
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=91.66 E-value=0.2 Score=63.18 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=33.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
++|+|||||..|+.+|..|++.|.+|+|+|+.+++.
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 202 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL 202 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC
Confidence 789999999999999999999999999999887664
No 316
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=91.66 E-value=0.2 Score=62.97 Aligned_cols=38 Identities=42% Similarity=0.577 Sum_probs=34.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+++..
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 47899999999999999999999999999999887653
No 317
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=91.56 E-value=0.22 Score=62.73 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+++.
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 211 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL 211 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 4799999999999999999999999999999988764
No 318
>PRK06370 mercuric reductase; Validated
Probab=91.54 E-value=0.21 Score=62.93 Aligned_cols=38 Identities=34% Similarity=0.519 Sum_probs=34.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+++..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 208 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP 208 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc
Confidence 47899999999999999999999999999999887653
No 319
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=91.52 E-value=0.22 Score=62.75 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||..|+-+|..|++.|.+|+|+|+.+++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4689999999999999999999999999999987764
No 320
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.49 E-value=0.2 Score=62.87 Aligned_cols=38 Identities=24% Similarity=0.459 Sum_probs=34.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
..+|+|||||..|+-+|..|++.|.+|+|+++.+++..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 46899999999999999999999999999999887653
No 321
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=91.49 E-value=0.23 Score=47.44 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=46.5
Q ss_pred HHHHHHhhhhhcchhhHHHhccccccccccccccCchhHHHHHHHHHHHHHHHHH
Q 046008 1469 LRHCVRLLVRVSTDLLAVRLSGIGKTVREKVCVHTSRDIRAIASQLVSVWLEVFR 1523 (1624)
Q Consensus 1469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1523 (1624)
+-.+|+-|--++-....++...||++|. ++..|.+++|+.+|+.|++.|.+.++
T Consensus 21 ~l~~L~~L~~~~~t~~~L~~T~iG~~v~-~Lrkh~~~~I~~~A~~Li~~WK~~v~ 74 (75)
T smart00509 21 CLDILKKLKKLPITVDLLEETRIGKKVN-GLRKHKNEEIRKLAKKLIKSWKKLVY 74 (75)
T ss_pred HHHHHHHHhcCCCCHHHHHHCcHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHhc
Confidence 4455666777889999999999999985 58999999999999999999998874
No 322
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.43 E-value=0.2 Score=59.73 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=40.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYT 902 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s 902 (1624)
...++..|||||-+|+++|++.+..|.+|.|+|..-++||.|--
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 45799999999999999999999999999999998899998754
No 323
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=91.37 E-value=0.13 Score=63.99 Aligned_cols=32 Identities=47% Similarity=0.638 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
+|+|||+|+|||+||..|++. ++|+|+=|...
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999998 99999987554
No 324
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.31 E-value=0.24 Score=62.45 Aligned_cols=37 Identities=38% Similarity=0.482 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+++.
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 208 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL 208 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC
Confidence 3689999999999999999999999999999987763
No 325
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=91.31 E-value=0.16 Score=63.99 Aligned_cols=33 Identities=36% Similarity=0.492 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
.++|+|||||.||..||...++.|.+++++=-.
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 489999999999999999999999999888654
No 326
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.21 E-value=0.25 Score=62.49 Aligned_cols=37 Identities=43% Similarity=0.583 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+++.
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il 210 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC 210 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence 4789999999999999999999999999999877663
No 327
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=91.11 E-value=0.26 Score=62.52 Aligned_cols=37 Identities=32% Similarity=0.506 Sum_probs=34.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+++.
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il 210 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI 210 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence 3689999999999999999999999999999988764
No 328
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=91.09 E-value=0.24 Score=62.50 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||++|+.+|..|++.|.+|+|+|+.+++.
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll 206 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL 206 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 3689999999999999999999999999999877653
No 329
>PRK07846 mycothione reductase; Reviewed
Probab=91.08 E-value=0.26 Score=62.20 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=33.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 3689999999999999999999999999999877653
No 330
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=91.06 E-value=0.17 Score=56.34 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=27.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
++|+|||.|..||..|..|+++||+|+.+|....
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE 34 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence 5899999999999999999999999999998765
No 331
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=91.06 E-value=0.24 Score=52.56 Aligned_cols=31 Identities=35% Similarity=0.565 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 864 v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
|+|||+|..|+..|++|++.|++|+++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998755
No 332
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.87 E-value=0.25 Score=61.93 Aligned_cols=35 Identities=31% Similarity=0.629 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
..++|+|||+|..|+++|..|++.|++|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35889999999999999999999999999999864
No 333
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=90.70 E-value=0.21 Score=67.22 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=30.4
Q ss_pred EEEECCCHHHHHHHHHHHHC---CCcEEEEcccccCC
Q 046008 864 IIVIGAGPAGLTAARHLQRQ---GFSVTVLEARNRIG 897 (1624)
Q Consensus 864 v~IiGaG~aGl~aA~~L~~~---g~~v~vlE~~~~~G 897 (1624)
|+|||||+||++||..|.+. +++|+|||+.++++
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~ 37 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN 37 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence 68999999999999998875 47899999999875
No 334
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=90.65 E-value=0.28 Score=61.08 Aligned_cols=36 Identities=31% Similarity=0.600 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
.++|+|||||++|+.+|..|++.|.+|+|+++.+.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 478999999999999999999999999999987765
No 335
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.52 E-value=0.27 Score=58.81 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
++|.|||+|..|...|+.|+++|++|+++++...
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 4799999999999999999999999999998653
No 336
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=90.51 E-value=0.3 Score=61.64 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+++.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll 205 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL 205 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc
Confidence 4689999999999999999999999999999877653
No 337
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=90.44 E-value=0.29 Score=61.82 Aligned_cols=37 Identities=35% Similarity=0.500 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||..|+.+|..|++.|.+|+|+|+.+++.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l 208 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL 208 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 3689999999999999999999999999999866553
No 338
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=0.25 Score=58.62 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=32.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEA 892 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~ 892 (1624)
....++.||||||-+||+||...+..|.+|.+|+.
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 45679999999999999999999999999999984
No 339
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=90.38 E-value=0.33 Score=61.63 Aligned_cols=37 Identities=41% Similarity=0.502 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||..|+.+|..|++.|.+|+|+|+.+++.
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 219 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL 219 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC
Confidence 3689999999999999999999999999999987654
No 340
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.09 E-value=2.8 Score=50.95 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=41.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDR 904 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~ 904 (1624)
...+||+|+|-|+--...+..|+..|.+|+.+++++.-|+-..+..
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~aslt 49 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLT 49 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccccee
Confidence 4479999999999999999999999999999999999999877753
No 341
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=89.73 E-value=0.4 Score=60.72 Aligned_cols=38 Identities=29% Similarity=0.498 Sum_probs=34.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGR 899 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~ 899 (1624)
++|+|||||..|+.+|..|++.|.+|+|+|+.+++...
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~ 215 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG 215 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC
Confidence 68999999999999999999999999999987776543
No 342
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=89.72 E-value=0.4 Score=52.39 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=29.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
...+|+|+|+|.+|+.||..|...|++|+++|.+.
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 45899999999999999999999999999999643
No 343
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.37 E-value=0.37 Score=57.05 Aligned_cols=32 Identities=34% Similarity=0.486 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
++|+|||+|..|...|..|+++|++|++++..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 57999999999999999999999999999864
No 344
>PRK04148 hypothetical protein; Provisional
Probab=89.33 E-value=0.69 Score=49.08 Aligned_cols=86 Identities=17% Similarity=0.314 Sum_probs=54.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC-------CCccccccc-CCCccccccceeecccccchhhhccC
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI-------GGRVYTDRT-SLSVPVDLGASIITGVEADVATERRA 931 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~-------GG~~~s~~~-~~g~~~d~Ga~~I~g~~~~v~~~~~~ 931 (1624)
...+|++||.| .|...|..|++.|++|+.+|-++.. |=.+..... ....-+--|+..+....++...+
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~--- 91 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQ--- 91 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHH---
Confidence 34789999999 9999999999999999999987662 111111110 00111234455555444443322
Q ss_pred CcHHHHHHHhCCceeeec
Q 046008 932 DPSSLVCAQLGLELTVLN 949 (1624)
Q Consensus 932 nPl~~LlkeLGLel~~l~ 949 (1624)
.|+..+.+++|.++...+
T Consensus 92 ~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 92 PFILELAKKINVPLIIKP 109 (134)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 467789999998776543
No 345
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=89.25 E-value=0.39 Score=64.80 Aligned_cols=36 Identities=39% Similarity=0.516 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
.++|+|||||+.|+-+|..|++.|.+|+|+|+.+++
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l 175 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL 175 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence 478999999999999999999999999999987765
No 346
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=89.25 E-value=0.45 Score=59.56 Aligned_cols=37 Identities=35% Similarity=0.534 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||+.|+.+|..|.+.|.+|+++++.+++.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 185 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL 185 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence 4789999999999999999999999999999877653
No 347
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.15 E-value=0.48 Score=57.29 Aligned_cols=34 Identities=21% Similarity=0.276 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
-++|+|||+|..|..-|..++.+|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 4679999999999999999999999999999754
No 348
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.11 E-value=0.41 Score=61.43 Aligned_cols=35 Identities=40% Similarity=0.461 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
.++|+|||||..|+.+|..|+..|.+|+|+|+.+.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 386 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE 386 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence 57999999999999999999999999999986543
No 349
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=89.05 E-value=0.45 Score=62.77 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=34.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGG 898 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG 898 (1624)
.++|+|||||..|+..|..|++.|.+|+|+|+.+++..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 45899999999999999999999999999999888754
No 350
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.04 E-value=0.73 Score=57.88 Aligned_cols=83 Identities=27% Similarity=0.365 Sum_probs=53.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecc--------cccchhhhccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITG--------VEADVATERRAD 932 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g--------~~~~v~~~~~~n 932 (1624)
.++|+|+|-|.+|++||.+|.+.|++|+++|.++..=+.........+..+..|-|.... ..+++ ...+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi---~~~~ 83 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGI---PPTH 83 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCC---CCCC
Confidence 789999999999999999999999999999977665222111111124455555433310 01111 1235
Q ss_pred cHHHHHHHhCCcee
Q 046008 933 PSSLVCAQLGLELT 946 (1624)
Q Consensus 933 Pl~~LlkeLGLel~ 946 (1624)
|+...++..|++..
T Consensus 84 p~v~~A~~~gi~i~ 97 (448)
T COG0771 84 PLVEAAKAAGIEII 97 (448)
T ss_pred HHHHHHHHcCCcEE
Confidence 66777788887654
No 351
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.97 E-value=0.41 Score=56.73 Aligned_cols=34 Identities=26% Similarity=0.551 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
++|+|||+|.-|...|..|+++|++|+++++.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 5799999999999999999999999999997543
No 352
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.93 E-value=0.5 Score=56.74 Aligned_cols=34 Identities=35% Similarity=0.438 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
..++|+|||+|.-|.+.|++|+++|++|+++-+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 3468999999999999999999999999999864
No 353
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=88.89 E-value=0.4 Score=52.93 Aligned_cols=35 Identities=31% Similarity=0.501 Sum_probs=29.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
..++|+|||+|.++.-+|+.|++.|.+|+++=|++
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 45999999999999999999999999999997754
No 354
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=88.73 E-value=0.48 Score=56.74 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
.++|+|||+|..|...|++|++.|++|+++.|.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 468999999999999999999999999999984
No 355
>PTZ00058 glutathione reductase; Provisional
Probab=88.56 E-value=0.5 Score=61.28 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||..|+.+|..|++.|.+|+|+|+.+++.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 5789999999999999999999999999999988764
No 356
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.55 E-value=0.41 Score=56.87 Aligned_cols=34 Identities=35% Similarity=0.521 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
.+|+|||+|.-|...|..|+.+|++|+++|..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 5899999999999999999999999999997543
No 357
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.41 E-value=0.47 Score=56.27 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
-++|+|||+|.-|...|..|+++|++|+++++..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3679999999999999999999999999999753
No 358
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.41 E-value=0.49 Score=54.38 Aligned_cols=66 Identities=27% Similarity=0.440 Sum_probs=47.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccCCCccccccceeecccccchhhhccCCcHHHHHHHh
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTSLSVPVDLGASIITGVEADVATERRADPSSLVCAQL 941 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~~g~~~d~Ga~~I~g~~~~v~~~~~~nPl~~LlkeL 941 (1624)
++++|||+|--|.+.|..|.+.||+|+++|+.+.. +..+. .-+.+.+++.+...+ ...++++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~---~~~~~-----~~~~~~~~v~gd~t~----------~~~L~~a 62 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER---VEEFL-----ADELDTHVVIGDATD----------EDVLEEA 62 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH---HHHHh-----hhhcceEEEEecCCC----------HHHHHhc
Confidence 57999999999999999999999999999986542 11111 123566666654332 2377888
Q ss_pred CCce
Q 046008 942 GLEL 945 (1624)
Q Consensus 942 GLel 945 (1624)
|+..
T Consensus 63 gi~~ 66 (225)
T COG0569 63 GIDD 66 (225)
T ss_pred CCCc
Confidence 8864
No 359
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=88.34 E-value=0.5 Score=55.89 Aligned_cols=32 Identities=31% Similarity=0.510 Sum_probs=29.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
++|+|||+|..|...|..|++.|++|+++.++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999974
No 360
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=88.21 E-value=0.53 Score=59.36 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
..++|+|||||..|+-+|..|.+.|.+|+|+++++
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 46899999999999999999999999999999764
No 361
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=88.09 E-value=74 Score=39.05 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=32.4
Q ss_pred ccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChhh
Q 046008 1113 LLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLGC 1163 (1624)
Q Consensus 1113 L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~v 1163 (1624)
+.+ +.+.|..|... .++.+.|++.+|.+++|+.||.|.+..-
T Consensus 100 v~~-~~~~v~~i~~~--------~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 100 VLW-LERKAIHAEAD--------GVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred cEE-EccEEEEEEec--------CCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 355 46678888763 3557888888888999999999999753
No 362
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=88.09 E-value=0.55 Score=59.05 Aligned_cols=36 Identities=25% Similarity=0.353 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
.++|+|||||..|+.+|..|++.|.+|+|+|+.+++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~ 201 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI 201 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 468999999999999999999999999999986654
No 363
>PRK06116 glutathione reductase; Validated
Probab=88.09 E-value=0.56 Score=58.99 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
.++|+|||||+.|+.+|..|++.|.+|+++++.+++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 478999999999999999999999999999986654
No 364
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=87.98 E-value=0.54 Score=60.35 Aligned_cols=36 Identities=42% Similarity=0.440 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..++|+|||||..|+.+|..|+..|.+|+|+++.+.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 357999999999999999999999999999986544
No 365
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=87.95 E-value=0.53 Score=63.88 Aligned_cols=37 Identities=35% Similarity=0.427 Sum_probs=33.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++++|||||+.||-+|..|++.|.+|+|+|+.+++-
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 4689999999999999999999999999999987753
No 366
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=87.89 E-value=0.57 Score=56.59 Aligned_cols=33 Identities=33% Similarity=0.462 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
.++|+|||+|.-|...|+.|+++|++|+++++.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 367999999999999999999999999999974
No 367
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=87.89 E-value=0.65 Score=58.25 Aligned_cols=37 Identities=27% Similarity=0.334 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||+.|+.+|..|++.|.+|+|+|+.+++.
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 194 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL 194 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 3589999999999999999999999999999876554
No 368
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=87.81 E-value=0.15 Score=61.86 Aligned_cols=56 Identities=0% Similarity=-0.155 Sum_probs=47.9
Q ss_pred chhhhhhhhhhhhccccCCCccccccccccccc---cCCCCccccccCCCcC-Chhcccc
Q 046008 781 NEIRQKESVVDDCQQRVDSDPKASNRLVGVDVS---CDDPSCGMVDGGTVPL-TIEERSE 836 (1624)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~---~~~~~c~~v~~~r~~l-~p~~~~~ 836 (1624)
.+.+++...+..+++.+++||++++++..++.+ ++++.||+|.++|++| ||.+.+.
T Consensus 275 ~~~~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k 334 (338)
T cd04733 275 AREAYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNK 334 (338)
T ss_pred ccchhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHH
Confidence 445666777888999999999999999977766 8999999999999999 9988554
No 369
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.79 E-value=0.56 Score=55.59 Aligned_cols=31 Identities=42% Similarity=0.490 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEA 892 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~ 892 (1624)
++|+|||+|..|...|+.|+++|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 3699999999999999999999999999986
No 370
>PRK10262 thioredoxin reductase; Provisional
Probab=87.72 E-value=0.64 Score=55.65 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
.++|+|||+|..|+.+|..|++.|.+|+++++.+.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG 180 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence 57899999999999999999999999999998653
No 371
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=87.72 E-value=0.56 Score=60.83 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
.++|+|||||..|+-+|..|++.|.+|+|+++.+++
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 679999999999999999999999999999998764
No 372
>PRK12831 putative oxidoreductase; Provisional
Probab=87.66 E-value=0.63 Score=59.02 Aligned_cols=36 Identities=33% Similarity=0.538 Sum_probs=32.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
...++|+|||||..|+-+|..|.+.|.+|+|+.+++
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 356899999999999999999999999999998754
No 373
>PLN02507 glutathione reductase
Probab=87.57 E-value=0.61 Score=59.69 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
.++|+|||||..|+-+|..|++.|.+|+|+++.+++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 368999999999999999999999999999987654
No 374
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=87.42 E-value=0.21 Score=60.80 Aligned_cols=53 Identities=6% Similarity=-0.041 Sum_probs=45.1
Q ss_pred hhhhhhhhhhccccCCCccccccccccccc---cCCCCccccccCCCcC-Chhcccc
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVS---CDDPSCGMVDGGTVPL-TIEERSE 836 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~---~~~~~c~~v~~~r~~l-~p~~~~~ 836 (1624)
+++...++.+++.+++||++++++.+++.+ +++|.||+|.++|+++ ||.+.+.
T Consensus 261 ~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k 317 (337)
T PRK13523 261 GYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRI 317 (337)
T ss_pred cccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHH
Confidence 445556778999999999999999888766 8889999999999999 9999443
No 375
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.33 E-value=0.6 Score=55.43 Aligned_cols=33 Identities=33% Similarity=0.576 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
++|+|||+|.-|...|..|+++|++|+++|+.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999644
No 376
>PLN02546 glutathione reductase
Probab=87.25 E-value=0.69 Score=60.02 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~G 897 (1624)
.++|+|||||..|+-+|..|+..|.+|+|+|+.+++.
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il 288 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL 288 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc
Confidence 4689999999999999999999999999999887764
No 377
>PLN02463 lycopene beta cyclase
Probab=86.85 E-value=46 Score=42.37 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=32.0
Q ss_pred ccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChh
Q 046008 1113 LLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLG 1162 (1624)
Q Consensus 1113 L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~ 1162 (1624)
++++ ++.|++|.. .++.+.|++.+|.+++||.||.|....
T Consensus 129 V~~~-~~~V~~I~~---------~~~~~~V~~~dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 129 VQFH-QAKVKKVVH---------EESKSLVVCDDGVKIQASLVLDATGFS 168 (447)
T ss_pred CEEE-eeEEEEEEE---------cCCeEEEEECCCCEEEcCEEEECcCCC
Confidence 3553 578999987 355688999999999999999998753
No 378
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=86.82 E-value=0.74 Score=58.78 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC---CCcEEEEcccccCC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQ---GFSVTVLEARNRIG 897 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~---g~~v~vlE~~~~~G 897 (1624)
.++|+|||||+.|+-+|..++.. |.+|+|+|+.+++.
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 47899999999999999877654 99999999988764
No 379
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=86.79 E-value=0.84 Score=51.77 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
..++|+|||||..|+..|..|.+.|.+|+|+...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4679999999999999999999999999999754
No 380
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=86.65 E-value=0.78 Score=53.55 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
.++|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 4789999999999999999999999999999754
No 381
>PRK13748 putative mercuric reductase; Provisional
Probab=86.55 E-value=0.77 Score=59.39 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
.++|+|||||..|+-+|..|++.|.+|+|+++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 468999999999999999999999999999974
No 382
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=86.43 E-value=0.84 Score=55.97 Aligned_cols=42 Identities=29% Similarity=0.496 Sum_probs=33.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEccc--ccCCCc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQ----GFSVTVLEAR--NRIGGR 899 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~----g~~v~vlE~~--~~~GG~ 899 (1624)
....++|+||||||.|++.|..|... -.+|+|||.. +.+|+.
T Consensus 33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~ 80 (481)
T KOG3855|consen 33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDF 80 (481)
T ss_pred CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCcccccc
Confidence 34579999999999999999999854 2579999986 444443
No 383
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=86.37 E-value=0.54 Score=55.44 Aligned_cols=31 Identities=42% Similarity=0.490 Sum_probs=26.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQG-------FSVTVLE 891 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g-------~~v~vlE 891 (1624)
.++|+|||||+.||+.|..+.+.+ .+|+|++
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~ 40 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVIS 40 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEec
Confidence 578999999999999999999865 3577765
No 384
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=86.32 E-value=1.1 Score=47.46 Aligned_cols=35 Identities=34% Similarity=0.452 Sum_probs=31.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFS-VTVLEAR 893 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~-v~vlE~~ 893 (1624)
-..++|+|||||-+|-.++++|+..|.+ |+|+-|.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3578999999999999999999999987 9999865
No 385
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=86.26 E-value=0.82 Score=56.46 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=43.7
Q ss_pred cCChhcccccchhhhhhhhhcCCCCccccCCCCCCcEEEEC-CCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 828 PLTIEERSESERVQSASCDDAGENHYLRCDIDVKKRIIVIG-AGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 828 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IiG-aG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
.++|.++..+-+.....|........+....+..++|+||| .|.-|-+.|..|.++|++|+++++.
T Consensus 65 ~l~~~~~~~i~~~i~~~s~~~q~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 65 GVPPDLIEDVLRRVMRESYSSENDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhcccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 34677654443333333333221112222233568899999 8999999999999999999999974
No 386
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=85.88 E-value=0.87 Score=55.43 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFS-VTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~-v~vlE~~~ 894 (1624)
.++|+|||+|..|+.+|..|.+.|.+ |+|+++++
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 57899999999999999999999997 99998753
No 387
>PRK14694 putative mercuric reductase; Provisional
Probab=85.76 E-value=0.95 Score=57.35 Aligned_cols=32 Identities=41% Similarity=0.558 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEA 892 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~ 892 (1624)
.++|+|||||+.|+.+|..|++.|.+|+|+++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~ 209 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLAR 209 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 36899999999999999999999999999986
No 388
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=85.67 E-value=0.93 Score=54.47 Aligned_cols=35 Identities=34% Similarity=0.516 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGF-SVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~-~v~vlE~~~~ 895 (1624)
+++|+|||+|..|+++|+.|+.+|+ +|+++|....
T Consensus 1 ~~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~ 36 (305)
T TIGR01763 1 RKKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG 36 (305)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence 3589999999999999999999887 8999997443
No 389
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.64 E-value=0.94 Score=54.70 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
.++|+|||+|.-|...|..|+++|++|+++.+..
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4589999999999999999999999999999854
No 390
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.57 E-value=0.85 Score=57.94 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
.++|+|+|.|.+|.+||.+|.+.|.+|++.|.++.
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 57899999999999999999999999999996544
No 391
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=85.54 E-value=0.82 Score=56.04 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
++|.|||.|-.||+.|..|++.||+|+.+|...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 589999999999999999999999999999754
No 392
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.47 E-value=0.85 Score=53.85 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
.+|+|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 579999999999999999999999999998643
No 393
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=85.40 E-value=0.59 Score=47.04 Aligned_cols=34 Identities=38% Similarity=0.616 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
..++|+|||||..|..-+..|.+.|.+|+|+-..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 5789999999999999999999999999999876
No 394
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=85.39 E-value=1.1 Score=49.47 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=31.5
Q ss_pred CCCCcEEEECCCH-HHHHHHHHHHHCCCcEEEEccc
Q 046008 859 DVKKRIIVIGAGP-AGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 859 ~~~~~v~IiGaG~-aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
-..++|+|||+|- .|..+|.+|.+.|.+|+|+.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 4679999999995 7999999999999999999875
No 395
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.35 E-value=0.9 Score=57.46 Aligned_cols=34 Identities=24% Similarity=0.520 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
.++|+|+|.|.+|+++|.+|.+.|++|++.|+.+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 5789999999999999999999999999999764
No 396
>PRK14727 putative mercuric reductase; Provisional
Probab=85.34 E-value=1 Score=57.34 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
.++|+|||||..|+.+|..|++.|.+|+|+++.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 378999999999999999999999999999863
No 397
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.30 E-value=0.91 Score=57.96 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
..++|+|+|.|.+|++||.+|...|++|++.|.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999965
No 398
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=85.13 E-value=0.93 Score=58.00 Aligned_cols=36 Identities=33% Similarity=0.449 Sum_probs=32.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
....+|+|||+|++||.|+..+...|.+|+++|.++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 357899999999999999999999999999998654
No 399
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=85.08 E-value=1 Score=57.41 Aligned_cols=31 Identities=32% Similarity=0.458 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEA 892 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~ 892 (1624)
.+|+|||||+.|+-+|..|++.|.+|+|+++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 211 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVR 211 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEe
Confidence 4799999999999999999999999999986
No 400
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=85.03 E-value=0.63 Score=55.18 Aligned_cols=48 Identities=31% Similarity=0.444 Sum_probs=40.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc--------ccCCCccccccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR--------NRIGGRVYTDRT 905 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~--------~~~GG~~~s~~~ 905 (1624)
--..-+|+|||||+.|.-||..+.-.|-+|+|+|.+ +..|||+.+...
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~s 220 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYS 220 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEc
Confidence 345678999999999999999999999999999988 346888777653
No 401
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=85.02 E-value=40 Score=44.22 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=31.1
Q ss_pred CCccCCeEEEecCCccCCCCC-------cHHHHHHHHHHHHHHHHHHHc
Q 046008 1312 GRPVENCLFFAGEATCKEHPD-------TVGGAMLSGLREAVRIIDILT 1353 (1624)
Q Consensus 1312 ~tPV~grLyFAGEaTs~~~~G-------tVEGAi~SGiRAA~~IL~~L~ 1353 (1624)
.++|+| ||-|||.++.+..| .+-+|+..|.+|+..+...+.
T Consensus 350 ~t~IpG-LyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~~~ 397 (565)
T TIGR01816 350 DQIVPG-LYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYAK 397 (565)
T ss_pred CCccCC-eeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 378999 99999987632222 366689999999998877654
No 402
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.93 E-value=0.97 Score=56.72 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
.++|+|+|+|.+|+++|.+|++.|++|++.|+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 5789999999999999999999999999999654
No 403
>PTZ00052 thioredoxin reductase; Provisional
Probab=84.80 E-value=1.1 Score=57.38 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEA 892 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~ 892 (1624)
++|+|||||+.|+.+|..|++.|.+|+|+++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~ 213 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVR 213 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEc
Confidence 5899999999999999999999999999986
No 404
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.58 E-value=1.1 Score=56.27 Aligned_cols=35 Identities=29% Similarity=0.538 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
.++|+|+|+|.+|+++|.+|+++|+.|+++|....
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 46899999999999999999999999999997654
No 405
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.52 E-value=1 Score=53.79 Aligned_cols=33 Identities=36% Similarity=0.478 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
++|+|||+|.-|...|..|++.|++|+++++..
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 579999999999999999999999999998753
No 406
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=84.45 E-value=1.3 Score=50.14 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=31.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
-..++|+|||||-.|...|..|.+.|++|+|+...
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 45789999999999999999999999999999753
No 407
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.42 E-value=1.1 Score=55.25 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
...+|+|||+|..|+.+|..|...|.+|++++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 45679999999999999999999999999999753
No 408
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.36 E-value=1.2 Score=53.38 Aligned_cols=35 Identities=34% Similarity=0.421 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
+.++|.|||+|.-|.+.|..|+++||+|+++.+..
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35689999999999999999999999999999754
No 409
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=84.35 E-value=0.9 Score=56.89 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
++|+|||.|..|+..|..|+++||+|+++++...
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 6799999999999999999999999999997554
No 410
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=84.24 E-value=1.3 Score=48.21 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=31.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLE 891 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE 891 (1624)
.-..++|+|||||-.|+.-|..|.+.|++|+|+.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 3467899999999999999999999999999994
No 411
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.20 E-value=0.99 Score=54.05 Aligned_cols=36 Identities=39% Similarity=0.420 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..++|+|||||-+|+.||..|+---..|+|||-.+.
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e 388 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE 388 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence 589999999999999999999966668999995443
No 412
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=84.12 E-value=0.7 Score=56.35 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQG-FSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g-~~v~vlE~~~~~ 896 (1624)
.+|+|+||.||++|+.|..|...+ .++..||+++..
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 368999999999999999999987 899999987653
No 413
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.01 E-value=1.2 Score=52.81 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
-++|+|||+|.-|...|..|+.+|++|+++++..
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 3579999999999999999999999999999754
No 414
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.92 E-value=1.1 Score=53.54 Aligned_cols=34 Identities=26% Similarity=0.521 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
-++|.|||+|..|...|..|++.|++|+++++..
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 3679999999999999999999999999998643
No 415
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.83 E-value=1.2 Score=53.60 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccc-CCC
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNR-IGG 898 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~-~GG 898 (1624)
++|+|||+|..|.++|+.|+.+| .+|+++++... +.|
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g 40 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEG 40 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhh
Confidence 37999999999999999999999 58999998643 444
No 416
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.80 E-value=1.1 Score=53.96 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
+|+|||||.-|.+.|..|++.|++|+++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999998743
No 417
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=83.48 E-value=0.99 Score=56.32 Aligned_cols=34 Identities=35% Similarity=0.445 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
+|.|||.|..|+..|..|+++||+|+++++....
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~ 35 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEK 35 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHH
Confidence 6999999999999999999999999999987653
No 418
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=83.42 E-value=0.31 Score=65.48 Aligned_cols=65 Identities=6% Similarity=-0.053 Sum_probs=51.6
Q ss_pred hhhhhhhhhccccCCCccccccccccccc---cCCCCccccccCCCcC-Chhc-------------ccccchhhhhhhhh
Q 046008 785 QKESVVDDCQQRVDSDPKASNRLVGVDVS---CDDPSCGMVDGGTVPL-TIEE-------------RSESERVQSASCDD 847 (1624)
Q Consensus 785 ~~~~~~~~~~~~v~v~~~~~~~~~~~d~~---~~~~~c~~v~~~r~~l-~p~~-------------~~~~~~~~~~~~~~ 847 (1624)
+....++.+|+.+++|++++++|..++.+ ++++.||+|.++|++| +|.+ ....+|..|+.|..
T Consensus 674 ~~~~~~~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 753 (765)
T PRK08255 674 YQTPFADRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWTLHEAAEIGYRDVAWPKQYLAGKRQLE 753 (765)
T ss_pred ccHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHHHHHcCCCCCCCchhhhhhhccch
Confidence 34456788999999999999999887766 8889999999999999 9976 12245666777766
Q ss_pred cC
Q 046008 848 AG 849 (1624)
Q Consensus 848 ~~ 849 (1624)
..
T Consensus 754 ~~ 755 (765)
T PRK08255 754 RN 755 (765)
T ss_pred hh
Confidence 54
No 419
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.27 E-value=1.2 Score=56.34 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=29.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
..++|+|+|.|.+|.+||.+|.+ |.+|+|+|..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 45789999999999999999994 9999999954
No 420
>PLN02411 12-oxophytodienoate reductase
Probab=83.15 E-value=0.26 Score=61.11 Aligned_cols=51 Identities=6% Similarity=0.067 Sum_probs=42.7
Q ss_pred hhhhhhhhccccCCCccccccccccccc---cCCCCccccccCCCcC-Chhccccc
Q 046008 786 KESVVDDCQQRVDSDPKASNRLVGVDVS---CDDPSCGMVDGGTVPL-TIEERSES 837 (1624)
Q Consensus 786 ~~~~~~~~~~~v~v~~~~~~~~~~~d~~---~~~~~c~~v~~~r~~l-~p~~~~~~ 837 (1624)
+...++.+++.+++|||+++++. ++.+ +++|.||+|.++|++| ||.+.+.+
T Consensus 301 ~~~~a~~ik~~v~~pvi~~G~i~-~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~ 355 (391)
T PLN02411 301 EAQLMRTLRRAYQGTFMCSGGFT-RELGMQAVQQGDADLVSYGRLFISNPDLVLRF 355 (391)
T ss_pred hhHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEECHHHHhCccHHHHH
Confidence 34567889999999999999994 4444 8899999999999999 99995544
No 421
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=83.10 E-value=1.4 Score=55.12 Aligned_cols=36 Identities=36% Similarity=0.589 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHH--------------CCCcEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQR--------------QGFSVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~--------------~g~~v~vlE~~~~~ 896 (1624)
.++|+|||||++|+..|..|+. .|.+|+|+|+.+++
T Consensus 173 ~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 173 LLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred cCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 3589999999999999999886 47889999986655
No 422
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=83.03 E-value=1.4 Score=54.78 Aligned_cols=40 Identities=33% Similarity=0.453 Sum_probs=33.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc-ccCC
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR-NRIG 897 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~-~~~G 897 (1624)
....++|||||||.||..||...++.|-+.+++-.+ +.+|
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig 65 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIG 65 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHhcCCceEEeeccccccc
Confidence 356899999999999999999999999987777654 4454
No 423
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=82.98 E-value=1.4 Score=55.74 Aligned_cols=35 Identities=46% Similarity=0.688 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGF-SVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~-~v~vlE~~~ 894 (1624)
..++|+|||||..|+-+|..|.+.|. +|+|+++++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999998 899998743
No 424
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=82.68 E-value=1.4 Score=59.20 Aligned_cols=36 Identities=31% Similarity=0.554 Sum_probs=32.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFS-VTVLEARN 894 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~-v~vlE~~~ 894 (1624)
...++|+|||||..|+-+|..|.+.|.+ |+|+++++
T Consensus 568 ~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 568 KFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3468999999999999999999999997 99998754
No 425
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=82.59 E-value=0.3 Score=59.41 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=44.4
Q ss_pred hhhhhhhhhhccccCCCccccccccccccc---cCCCCccccccCCCcC-Chhcccc
Q 046008 784 RQKESVVDDCQQRVDSDPKASNRLVGVDVS---CDDPSCGMVDGGTVPL-TIEERSE 836 (1624)
Q Consensus 784 ~~~~~~~~~~~~~v~v~~~~~~~~~~~d~~---~~~~~c~~v~~~r~~l-~p~~~~~ 836 (1624)
.++...++.+++.+++||+.++++. ++.+ ++++.||+|.++|+++ +|.+.+.
T Consensus 271 ~~~~~~~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k 326 (338)
T cd02933 271 DQPPDFLDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIANPDLVER 326 (338)
T ss_pred ccchHHHHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCcCHHHH
Confidence 4555677889999999999999997 6666 8889999999999999 9998544
No 426
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=82.43 E-value=0.2 Score=61.03 Aligned_cols=53 Identities=8% Similarity=0.067 Sum_probs=45.0
Q ss_pred hhhhhhhhhccccCCCccccccccccccc---cCCCCccccccCCCcC-Chhccccc
Q 046008 785 QKESVVDDCQQRVDSDPKASNRLVGVDVS---CDDPSCGMVDGGTVPL-TIEERSES 837 (1624)
Q Consensus 785 ~~~~~~~~~~~~v~v~~~~~~~~~~~d~~---~~~~~c~~v~~~r~~l-~p~~~~~~ 837 (1624)
+....++.+++.+++|||.++++..++.+ +++|.||+|.++|++| ||.+.+.+
T Consensus 278 ~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~ 334 (341)
T PF00724_consen 278 YNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKA 334 (341)
T ss_dssp TTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHH
T ss_pred hhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHH
Confidence 44567889999999999999999999844 8999999999999999 99995443
No 427
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=82.39 E-value=1.7 Score=49.23 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGF-SVTVLEAR 893 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~-~v~vlE~~ 893 (1624)
...+|+|||+|--|..+|..|++.|+ +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46889999999999999999999999 59999964
No 428
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=82.20 E-value=1.5 Score=54.70 Aligned_cols=36 Identities=33% Similarity=0.353 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
....+|+|+|+|+.|+.+|..|...|.+|+++|..+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 357899999999999999999999999999998754
No 429
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=82.06 E-value=1.4 Score=56.66 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
-++|.|||+|.-|...|..|+++|++|+++|+...
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 35799999999999999999999999999997654
No 430
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=82.00 E-value=1.7 Score=47.30 Aligned_cols=34 Identities=35% Similarity=0.541 Sum_probs=29.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
+++|.|||-|..|...|..|.++||+|++|++..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 3689999999999999999999999999999754
No 431
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=81.77 E-value=1.7e+02 Score=39.30 Aligned_cols=51 Identities=22% Similarity=0.339 Sum_probs=41.1
Q ss_pred HHHHHHHhhhc---cccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccChh
Q 046008 1103 STVVEALGKEL---LIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPLG 1162 (1624)
Q Consensus 1103 ~sLveALAe~L---~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~~ 1162 (1624)
..|.+.|++.+ .|+++++|+.|.. .++.|+|++.+|.++.||.||.|-...
T Consensus 194 ~~L~~~L~~alg~~~i~~g~~V~~I~~---------~~d~VtV~~~dG~ti~aDlVVGADG~~ 247 (668)
T PLN02927 194 MTLQQILARAVGEDVIRNESNVVDFED---------SGDKVTVVLENGQRYEGDLLVGADGIW 247 (668)
T ss_pred HHHHHHHHhhCCCCEEEcCCEEEEEEE---------eCCEEEEEECCCCEEEcCEEEECCCCC
Confidence 35666666665 3788999999987 456899999999999999999988864
No 432
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=81.60 E-value=1.5 Score=55.51 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHHCCCcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLT-AARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~-aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..++|.|||.|-+|++ +|.+|+++|++|++.|....
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 4568999999999999 69999999999999997543
No 433
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=81.40 E-value=1.5 Score=56.39 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=32.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
-++|.|||+|.-|...|..|+++|++|+++|+...
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46799999999999999999999999999997754
No 434
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=81.29 E-value=1.8 Score=51.78 Aligned_cols=36 Identities=33% Similarity=0.494 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..++|+|||.|..|+.+|..|...|.+|++++++..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 468999999999999999999999999999998743
No 435
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=81.09 E-value=1.4 Score=56.83 Aligned_cols=39 Identities=36% Similarity=0.500 Sum_probs=33.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccccC
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQ-GFSVTVLEARNRI 896 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~vlE~~~~~ 896 (1624)
....+|.||||||-||...|.+|++. ..+|+|||+....
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45689999999999999999999987 5789999984443
No 436
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=80.98 E-value=1.6 Score=56.04 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
++|+|||+|.-|...|..|+++|++|+|+++.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999764
No 437
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.31 E-value=2 Score=54.70 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=31.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
...++|+|+|.|.+|+++|++|.+.|+.|++.++.
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 34578999999999999999999999999999964
No 438
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=80.30 E-value=0.92 Score=55.06 Aligned_cols=41 Identities=44% Similarity=0.613 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRV 900 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~ 900 (1624)
-.++.+|||||..||..+--..+.|-+|+++|..+.+||.+
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m 250 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM 250 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc
Confidence 35789999999999999999999999999999999999874
No 439
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.04 E-value=1.8 Score=55.28 Aligned_cols=34 Identities=32% Similarity=0.580 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
.++|.|||.|.+|+++|.+|.+.|++|+++|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4689999999999999999999999999999654
No 440
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=79.89 E-value=2.4 Score=47.89 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=32.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
...++|+|+|.|-.|..+|.+|.+.|++|++++.+.
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 346889999999999999999999999999998754
No 441
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=79.81 E-value=1.8 Score=52.18 Aligned_cols=34 Identities=32% Similarity=0.578 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
++|+|+|+|.-|...|++|+++|++|+++=|..+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 4799999999999999999999988888765443
No 442
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=79.74 E-value=1.7 Score=58.21 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
.-++|+|||||..|...|+.++.+|++|+|+|..+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 346899999999999999999999999999997643
No 443
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=79.62 E-value=2 Score=54.91 Aligned_cols=36 Identities=33% Similarity=0.495 Sum_probs=32.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
+..+|+|+|+|+.|+.|+..+...|..|+++|.+..
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~ 198 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPE 198 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 357999999999999999999999999999987543
No 444
>PRK06223 malate dehydrogenase; Reviewed
Probab=79.43 E-value=2.3 Score=50.90 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGF-SVTVLEARNR 895 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~-~v~vlE~~~~ 895 (1624)
+++|+|||||..|.+.|+.|+..|+ +|+++|....
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 3689999999999999999999876 9999998554
No 445
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=79.08 E-value=1.9 Score=50.96 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
+|.|||.|.-|.+.|..|.++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999998753
No 446
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=79.04 E-value=2 Score=57.36 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=33.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..-++|+|||||..|...|+.++.+|++|+++|....
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4567899999999999999999999999999997643
No 447
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=78.96 E-value=2.3 Score=51.12 Aligned_cols=34 Identities=26% Similarity=0.541 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNR 895 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~ 895 (1624)
++|+|||+|-.|.++|+.|+..| ++|+|+++...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 37999999999999999999999 57999998543
No 448
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=78.85 E-value=1.4 Score=54.83 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=21.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGF 885 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~ 885 (1624)
....|+|||||++|...|-.|+.+-+
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~ 179 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLH 179 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHH
Confidence 34579999999999999999987643
No 449
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=78.75 E-value=0.47 Score=58.28 Aligned_cols=50 Identities=6% Similarity=-0.022 Sum_probs=42.1
Q ss_pred hhhhhhccccCCCccccccccccccc---cCCCCccccccCCCcC-Chhcccccc
Q 046008 788 SVVDDCQQRVDSDPKASNRLVGVDVS---CDDPSCGMVDGGTVPL-TIEERSESE 838 (1624)
Q Consensus 788 ~~~~~~~~~v~v~~~~~~~~~~~d~~---~~~~~c~~v~~~r~~l-~p~~~~~~~ 838 (1624)
..++.+|+.+++|+++++++ +++.+ +++|.||+|.++|++| ||.+.+.+.
T Consensus 282 ~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~ 335 (362)
T PRK10605 282 AFREKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQ 335 (362)
T ss_pred HHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHh
Confidence 45678999999999999986 56665 8899999999999999 999955443
No 450
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=78.70 E-value=1.9 Score=51.32 Aligned_cols=38 Identities=26% Similarity=0.508 Sum_probs=32.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEccccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQ-GF-SVTVLEARNR 895 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~-g~-~v~vlE~~~~ 895 (1624)
...+.+|+|||||-+|+++|..+.++ |. +|.|+|-.++
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 45789999999999999999999886 43 6999997654
No 451
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=78.13 E-value=2.3 Score=58.51 Aligned_cols=35 Identities=37% Similarity=0.540 Sum_probs=32.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
..++|+|||||..|+-||..+.+.|.+|+++.+++
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 56899999999999999999999999999998764
No 452
>PRK06175 L-aspartate oxidase; Provisional
Probab=78.07 E-value=83 Score=39.82 Aligned_cols=40 Identities=23% Similarity=0.363 Sum_probs=29.1
Q ss_pred CCccCCeEEEecCCccC-CCCC------cHHHHHHHHHHHHHHHHHHH
Q 046008 1312 GRPVENCLFFAGEATCK-EHPD------TVGGAMLSGLREAVRIIDIL 1352 (1624)
Q Consensus 1312 ~tPV~grLyFAGEaTs~-~~~G------tVEGAi~SGiRAA~~IL~~L 1352 (1624)
++|++| ||-|||.++. -|+. .+-.|+..|.+||+.+...+
T Consensus 341 ~t~i~g-LYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~ 387 (433)
T PRK06175 341 KTSMKN-LYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEI 387 (433)
T ss_pred cccCCC-eEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhh
Confidence 489999 9999998752 2221 24458889999999886544
No 453
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.07 E-value=2.4 Score=52.47 Aligned_cols=33 Identities=36% Similarity=0.543 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQG-FSVTVLEAR 893 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g-~~v~vlE~~ 893 (1624)
+++|+|||||-.|.++|+.|++.| .+|+|.+|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 478999999999999999999999 899999987
No 454
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=78.03 E-value=2.1 Score=51.52 Aligned_cols=33 Identities=30% Similarity=0.469 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
-++|+|||||.-|-.-|+.++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 468999999999999999999988999999976
No 455
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=77.93 E-value=2.2 Score=53.12 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
+|.|||.|..|+..|..|+. ||+|+++|.....
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~k 34 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSR 34 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHH
Confidence 69999999999999988885 9999999986543
No 456
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=77.89 E-value=2.8 Score=49.99 Aligned_cols=35 Identities=29% Similarity=0.507 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGF-SVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~-~v~vlE~~~ 894 (1624)
..++|+|||+|-+|-++|+.|+..|. +|+|+.|..
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 35789999999999999999999998 699998763
No 457
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=77.50 E-value=3.8 Score=39.83 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=30.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQ-GFSVTVLEA 892 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~vlE~ 892 (1624)
...++++|+|+|..|..+|.+|.+. +.+|.++++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 3467899999999999999999998 678999987
No 458
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=77.44 E-value=1e+02 Score=39.86 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=30.6
Q ss_pred hccccccceEEEEEecCCCCCCCCCCCcEEEEe---CCC--cEEEcCEEEEccChh
Q 046008 1112 ELLIHHNHVVTDISYSFKDSDLSDGQSRVKVST---SNG--SEFSGDAVLITVPLG 1162 (1624)
Q Consensus 1112 ~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~T---adG--eti~AD~VIsAiP~~ 1162 (1624)
+.+|+++++|+.|... ++..+.|++ .+| .++.|+.||.|+.+.
T Consensus 142 Ga~i~~~t~V~~i~~~--------~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~w 189 (516)
T TIGR03377 142 GARIFTYTKVTGLIRE--------GGRVTGVKVEDHKTGEEERIEAQVVINAAGIW 189 (516)
T ss_pred CCEEEcCcEEEEEEEE--------CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcc
Confidence 4589999999999873 222223443 234 378999999999875
No 459
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=77.30 E-value=2.7 Score=50.18 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=32.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..++|+|||+|-.|..+|..|+..|++|+++++...
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 468999999999999999999999999999998643
No 460
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=77.25 E-value=1.5 Score=51.07 Aligned_cols=34 Identities=26% Similarity=0.513 Sum_probs=27.0
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CcEEEEcccccC
Q 046008 863 RIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNRI 896 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~~ 896 (1624)
+.+|||||+||.+||-.|+..- .+|+|+-+.+.+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 4689999999999999999863 468887765543
No 461
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=76.89 E-value=2.6 Score=56.51 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
..-++|+|||||.-|...|+.++.+|++|+++|..+.
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~ 369 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA 369 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence 3456899999999999999999999999999997643
No 462
>PRK08071 L-aspartate oxidase; Provisional
Probab=76.81 E-value=58 Score=42.14 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=27.8
Q ss_pred CCccCCeEEEecCCccCC-CCC------cHHHHHHHHHHHHHHHHHH
Q 046008 1312 GRPVENCLFFAGEATCKE-HPD------TVGGAMLSGLREAVRIIDI 1351 (1624)
Q Consensus 1312 ~tPV~grLyFAGEaTs~~-~~G------tVEGAi~SGiRAA~~IL~~ 1351 (1624)
+++|+| ||-|||.++.+ |++ .+-.|+..|.+||+.+...
T Consensus 342 ~t~I~G-LyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~~ 387 (510)
T PRK08071 342 ETSIPG-LYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILTK 387 (510)
T ss_pred cccCCC-eEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 478999 99999987532 221 2455788888888887654
No 463
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=76.73 E-value=2.9 Score=47.62 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=29.2
Q ss_pred CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIG-AGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiG-aG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
++|.||| +|.-|.+.|..|++.|++|+++.+..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 3699997 79999999999999999999997643
No 464
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=76.56 E-value=2.6 Score=53.65 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQG--FSVTVLEARNR 895 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g--~~v~vlE~~~~ 895 (1624)
++|+|||+|..||..|..|+++| ++|+.+|....
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 57999999999999999999985 78999997544
No 465
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=76.32 E-value=3.7 Score=49.83 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccccC
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGF-SVTVLEARNRI 896 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~-~v~vlE~~~~~ 896 (1624)
.++|+|||||-.|.++|+.|+..|+ +|+|+|..+..
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 4789999999999999999999996 89999986653
No 466
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=76.30 E-value=3 Score=52.05 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
...++|+|||.|..|+.+|..|...|.+|+++|..+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 357899999999999999999999999999998655
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=76.29 E-value=3.5 Score=45.88 Aligned_cols=34 Identities=35% Similarity=0.544 Sum_probs=30.5
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccc
Q 046008 860 VKKRIIVIGA-GPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 860 ~~~~v~IiGa-G~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
..++|+|+|| |..|..+|..|++.|++|+++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999997 999999999999999999999764
No 468
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.83 E-value=2.8 Score=53.02 Aligned_cols=33 Identities=33% Similarity=0.491 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGFSVTVLEAR 893 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~ 893 (1624)
.++|.|||.|-+|+++|.+|.+.|++|++.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 468999999999999999999999999999954
No 469
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=75.63 E-value=1.2e+02 Score=40.24 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=31.7
Q ss_pred CCccCCeEEEecCCccCCCCC-------cHHHHHHHHHHHHHHHHHHHc
Q 046008 1312 GRPVENCLFFAGEATCKEHPD-------TVGGAMLSGLREAVRIIDILT 1353 (1624)
Q Consensus 1312 ~tPV~grLyFAGEaTs~~~~G-------tVEGAi~SGiRAA~~IL~~L~ 1353 (1624)
.++|+| ||-|||.++.+..| .+-+|+..|.+||..+...+.
T Consensus 382 ~t~I~G-LyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~ 429 (598)
T PRK09078 382 DAVVPG-LMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAEVIK 429 (598)
T ss_pred CCccCc-eeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHHhhh
Confidence 468999 99999987633222 466799999999999887664
No 470
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=75.45 E-value=2.5 Score=48.18 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=33.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
...+.|+|||||.-|...|...+..|+.|.|+++...
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 4567899999999999999999999999999997654
No 471
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=74.94 E-value=3.6 Score=47.45 Aligned_cols=34 Identities=32% Similarity=0.601 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc---EEEEccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFS---VTVLEAR 893 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~---v~vlE~~ 893 (1624)
...+|+|+|||-+|..+|+.|.+.|.. |.|+++.
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 457899999999999999999999974 9999986
No 472
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=74.78 E-value=2.9 Score=49.57 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 863 RIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 863 ~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48999999999999999999999999998754
No 473
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=74.75 E-value=39 Score=44.09 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=31.2
Q ss_pred CccCCeEEEecCCccCC-CCC------cHHHHHHHHHHHHHHHHHHHc
Q 046008 1313 RPVENCLFFAGEATCKE-HPD------TVGGAMLSGLREAVRIIDILT 1353 (1624)
Q Consensus 1313 tPV~grLyFAGEaTs~~-~~G------tVEGAi~SGiRAA~~IL~~L~ 1353 (1624)
++|+| ||-|||.++.+ |++ .+-+|+..|.+|+..+...+.
T Consensus 357 t~I~G-LyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~ 403 (566)
T TIGR01812 357 TIVKG-LFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAA 403 (566)
T ss_pred cccCC-eeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 89999 99999987632 221 366799999999999887764
No 474
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=74.75 E-value=3.7 Score=48.38 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
..++|+|+|+|-+|.++|+.|++.|++|+|+.|..
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45789999999999999999999999999998753
No 475
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=74.55 E-value=2.9 Score=55.81 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQ-RQGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~-~~g~~v~vlE~~~ 894 (1624)
.-++|+|||||..|...|+.++ ++|++|+|+|..+
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 4568999999999999999998 5899999999764
No 476
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.54 E-value=3.1 Score=52.50 Aligned_cols=33 Identities=39% Similarity=0.701 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
-.|+|||.|-+|+++|.+|.+.|++|++.|...
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 469999999999999999999999999999654
No 477
>TIGR01385 TFSII transcription elongation factor S-II. This model represents eukaryotic transcription elongation factor S-II. This protein allows stalled RNA transcription complexes to perform a cleavage of the nascent RNA and restart at the newly generated 3-prime end.
Probab=74.43 E-value=4.5 Score=48.60 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=47.6
Q ss_pred HHHhhhhhcchhhHHHhccccccccccccccCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 046008 1472 CVRLLVRVSTDLLAVRLSGIGKTVREKVCVHTSRDIRAIASQLVSVWLEVFRKEKASS 1529 (1624)
Q Consensus 1472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1529 (1624)
.|+-|=-+.-.+..+|...||++|.. |..|.+.+|+.+|+.|+..|...+-.++...
T Consensus 26 ~L~~L~~~~~t~~lL~~T~IG~~Vn~-lrkh~~~~I~~lAk~li~~WK~~v~~~k~~~ 82 (299)
T TIGR01385 26 ILHQLKEFPPTEELLQETKVGVKVNK-LRKHPNEDISKLAKKIIKSWKKVVDKNKSDH 82 (299)
T ss_pred HHHHHhcCCCcHHHHhhCchhHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 34445566777888999999999975 8999999999999999999999998874443
No 478
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=74.33 E-value=3.6 Score=43.17 Aligned_cols=32 Identities=38% Similarity=0.768 Sum_probs=28.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGF-SVTVLEA 892 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~-~v~vlE~ 892 (1624)
..+|+|||+|--|..+|..|++.|. +++|+|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 4689999999999999999999998 5999994
No 479
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=74.29 E-value=3 Score=53.09 Aligned_cols=35 Identities=17% Similarity=0.300 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
..++|+|||+|.+|+-.|..|+..+.+|+|+.++.
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 56899999999999999999999999999998764
No 480
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=74.27 E-value=3.8 Score=50.05 Aligned_cols=34 Identities=29% Similarity=0.591 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGF-SVTVLEAR 893 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~-~v~vlE~~ 893 (1624)
...+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46789999999999999999999998 79999963
No 481
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=73.98 E-value=3.8 Score=52.12 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=31.8
Q ss_pred CccCCeEEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHccC
Q 046008 1313 RPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTTG 1355 (1624)
Q Consensus 1313 tPV~grLyFAGEaTs~~~~GtVEGAi~SGiRAA~~IL~~L~~~ 1355 (1624)
+.++| ||.+||.+.. +..+..|+..|..||..|...|.+.
T Consensus 428 Ts~~g-Vfa~GD~~~g--~~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 428 TSNPK-VFAAGDMRRG--QSLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCCCC-EEEccccCCC--chhHHHHHHHHHHHHHHHHHHHhcC
Confidence 44567 9999997753 3467889999999999999999753
No 482
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=73.88 E-value=61 Score=42.89 Aligned_cols=41 Identities=29% Similarity=0.341 Sum_probs=31.3
Q ss_pred hccccccceEEEEEecCCCCCCCCCCCcEEEEeCCCcEEEcCEEEEccCh
Q 046008 1112 ELLIHHNHVVTDISYSFKDSDLSDGQSRVKVSTSNGSEFSGDAVLITVPL 1161 (1624)
Q Consensus 1112 ~L~IrLNt~VtrI~~~~~~~~~s~~~~~V~V~TadGeti~AD~VIsAiP~ 1161 (1624)
++.| +.+.|+.|..+ ++..+.|.+.+|..|.|+.||+|+..
T Consensus 115 nV~I-~q~~V~~Li~e--------~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 115 NLDL-FQGEVEDLIVE--------NGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CcEE-EEeEEEEEEec--------CCEEEEEEECCCCEEECCEEEEeeCc
Confidence 3455 46778888773 33445688999999999999999986
No 483
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=73.84 E-value=6.2 Score=46.83 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=27.4
Q ss_pred CeEEEecCCccCCCCC---cHHHHHHHHHHHHHHHHHHHcc
Q 046008 1317 NCLFFAGEATCKEHPD---TVGGAMLSGLREAVRIIDILTT 1354 (1624)
Q Consensus 1317 grLyFAGEaTs~~~~G---tVEGAi~SGiRAA~~IL~~L~~ 1354 (1624)
+|+++.||+.....|- .+.-||..|...|..|...+.+
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~~~~g 331 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAAALKG 331 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHHHhcC
Confidence 4699999997755332 4666999999999888877763
No 484
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=73.80 E-value=4.6 Score=48.87 Aligned_cols=35 Identities=20% Similarity=0.521 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGF--SVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~--~v~vlE~~~ 894 (1624)
.+++|+|||+|-.|-++|+.|+..|. ++.|+|...
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 45799999999999999999999998 799999744
No 485
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=73.80 E-value=3.7 Score=54.46 Aligned_cols=36 Identities=42% Similarity=0.599 Sum_probs=31.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGF-SVTVLEARN 894 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~-~v~vlE~~~ 894 (1624)
...++|+|||||..|+-+|..|.+.|. +|+|+.++.
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 357899999999999999999999997 599998654
No 486
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=73.77 E-value=3.4 Score=55.31 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=31.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEcccc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQ-RQGFSVTVLEARN 894 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~-~~g~~v~vlE~~~ 894 (1624)
..-++|+|||||..|...|+.++ ..|++|+++|...
T Consensus 307 ~~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 307 RPVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred CcccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 34578999999999999999999 8899999999754
No 487
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=73.65 E-value=4.2 Score=41.05 Aligned_cols=33 Identities=27% Similarity=0.522 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCcEEEEcccccC
Q 046008 864 IIVIGAGPAGLTAARHLQRQGFSVTVLEARNRI 896 (1624)
Q Consensus 864 v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~ 896 (1624)
|+|||.|..|...|..|.+.+.+|+++|.....
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~ 33 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPER 33 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHH
Confidence 799999999999999999987799999987643
No 488
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=73.50 E-value=3.8 Score=49.07 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=29.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccc
Q 046008 861 KKRIIVIGAGPAGLTAARHLQRQGF--SVTVLEARN 894 (1624)
Q Consensus 861 ~~~v~IiGaG~aGl~aA~~L~~~g~--~v~vlE~~~ 894 (1624)
..+|+|||+|..|.+.|..|.+.|+ +|+++++..
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 4689999999999999999999995 799998643
No 489
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.38 E-value=3.5 Score=51.61 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
++|+|||-|.+|+++|..|.++|++|+++|.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 579999999999999999999999999999643
No 490
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=72.95 E-value=5 Score=42.55 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQG-FSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g-~~v~vlE~~~ 894 (1624)
..++|+|||+|..|.+.|..|.+.| ++|+++.++.
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 3578999999999999999999996 7899998754
No 491
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=72.95 E-value=4.3 Score=51.06 Aligned_cols=35 Identities=31% Similarity=0.403 Sum_probs=32.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
..++|+|||.|..|..+|..|...|.+|+++|..+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 47899999999999999999999999999999754
No 492
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=72.83 E-value=4.4 Score=47.95 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=30.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcc
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQG-FSVTVLEA 892 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g-~~v~vlE~ 892 (1624)
-...+|+|||+|-.|..+|..|++.| .+++|+|.
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~ 62 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDM 62 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeC
Confidence 35678999999999999999999999 46999984
No 493
>PTZ00117 malate dehydrogenase; Provisional
Probab=72.75 E-value=4.5 Score=49.03 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQG-FSVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g-~~v~vlE~~~ 894 (1624)
.+++|+|||||-.|.++|+.|+..| .+++|+|...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4679999999999999999999999 6899999764
No 494
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=72.26 E-value=4.3 Score=48.20 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
++|.|||.|..|...|..|++.|++|++++++.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 579999999999999999999999999998754
No 495
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=72.18 E-value=4.8 Score=48.03 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=30.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGFS-VTVLEAR 893 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~~-v~vlE~~ 893 (1624)
..++|+|+|||=+|.++|+.|++.|.+ |+|+.|.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 457899999999999999999999997 9999875
No 496
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.13 E-value=3.7 Score=50.39 Aligned_cols=48 Identities=27% Similarity=0.279 Sum_probs=43.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccccCCCcccccccC
Q 046008 859 DVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNRIGGRVYTDRTS 906 (1624)
Q Consensus 859 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~~GG~~~s~~~~ 906 (1624)
+..+||||||.|+.-...|...++.|.+|+=++.++.-||...++...
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms 53 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMS 53 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeec
Confidence 457999999999999999999999999999999999999999888653
No 497
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=72.02 E-value=3.9 Score=51.31 Aligned_cols=34 Identities=35% Similarity=0.608 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEccccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARNR 895 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~~ 895 (1624)
++|+|||+|..|...|..|.+.|++|+++|+...
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 3799999999999999999999999999998554
No 498
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=72.01 E-value=4.3 Score=48.55 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 862 KRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 862 ~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
.+|.|||.|.-|...|..|+++|++|++++++.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999998754
No 499
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=72.00 E-value=4.5 Score=51.23 Aligned_cols=37 Identities=35% Similarity=0.411 Sum_probs=33.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccc
Q 046008 858 IDVKKRIIVIGAGPAGLTAARHLQRQGFSVTVLEARN 894 (1624)
Q Consensus 858 ~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~vlE~~~ 894 (1624)
.-..|+|+|||+|-+|...|-.|++.|.+|+++=|.+
T Consensus 172 ~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~ 208 (443)
T COG2072 172 DLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSP 208 (443)
T ss_pred ccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCC
Confidence 3468999999999999999999999999999997643
No 500
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=71.92 E-value=5 Score=48.51 Aligned_cols=35 Identities=17% Similarity=0.524 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccc
Q 046008 860 VKKRIIVIGAGPAGLTAARHLQRQGF--SVTVLEARN 894 (1624)
Q Consensus 860 ~~~~v~IiGaG~aGl~aA~~L~~~g~--~v~vlE~~~ 894 (1624)
.+.+|+|||+|-.|.++|+.|+..|. ++.|+|...
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45799999999999999999999886 699999754
Done!