Query 046009
Match_columns 398
No_of_seqs 230 out of 1559
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:49:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 1E-100 2E-105 780.6 30.3 334 59-392 31-370 (524)
2 PLN02849 beta-glucosidase 100.0 2.4E-94 5.2E-99 749.6 30.7 318 54-372 19-336 (503)
3 PLN02998 beta-glucosidase 100.0 1.9E-93 4.1E-98 742.0 30.0 327 45-373 13-341 (497)
4 PLN02814 beta-glucosidase 100.0 1.8E-92 3.8E-97 735.8 27.9 312 60-373 23-335 (504)
5 COG2723 BglB Beta-glucosidase/ 100.0 1.3E-89 2.9E-94 694.7 26.1 298 63-374 2-309 (460)
6 TIGR01233 lacG 6-phospho-beta- 100.0 3.6E-88 7.9E-93 699.4 27.9 293 63-372 2-305 (467)
7 PRK13511 6-phospho-beta-galact 100.0 3.5E-88 7.5E-93 700.5 27.7 294 63-373 3-307 (469)
8 PRK09593 arb 6-phospho-beta-gl 100.0 8.9E-88 1.9E-92 697.9 28.0 296 63-373 4-322 (478)
9 PRK09589 celA 6-phospho-beta-g 100.0 4.7E-87 1E-91 692.2 28.6 294 64-372 3-320 (476)
10 PF00232 Glyco_hydro_1: Glycos 100.0 7.3E-88 1.6E-92 696.8 21.3 298 63-375 3-307 (455)
11 PRK15014 6-phospho-beta-glucos 100.0 2.6E-86 5.6E-91 686.4 29.7 298 61-373 2-323 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 1.7E-85 3.7E-90 679.4 28.5 295 64-373 3-319 (474)
13 TIGR03356 BGL beta-galactosida 100.0 4E-84 8.8E-89 663.4 27.1 293 65-373 1-296 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.3 5.9E-12 1.3E-16 127.6 8.6 108 115-226 10-140 (374)
15 PF00150 Cellulase: Cellulase 99.3 1.6E-11 3.5E-16 117.6 9.4 109 116-227 22-134 (281)
16 smart00633 Glyco_10 Glycosyl h 98.7 3E-08 6.4E-13 95.6 8.7 82 137-226 2-85 (254)
17 COG1874 LacA Beta-galactosidas 98.5 3E-07 6.4E-12 99.1 7.5 117 115-235 30-173 (673)
18 COG2730 BglC Endoglucanase [Ca 98.1 1E-05 2.3E-10 83.3 9.1 109 118-226 76-193 (407)
19 PF01229 Glyco_hydro_39: Glyco 97.9 4E-05 8.6E-10 80.7 9.5 106 117-227 41-168 (486)
20 PF07745 Glyco_hydro_53: Glyco 97.8 0.00054 1.2E-08 68.8 15.0 102 118-226 27-137 (332)
21 PF00331 Glyco_hydro_10: Glyco 97.8 0.00011 2.4E-09 73.4 9.0 123 65-227 6-137 (320)
22 PF01301 Glyco_hydro_35: Glyco 97.5 0.00044 9.5E-09 69.1 8.6 110 115-225 24-151 (319)
23 PF01373 Glyco_hydro_14: Glyco 97.1 0.0008 1.7E-08 68.7 6.3 99 114-215 15-144 (402)
24 PLN02803 beta-amylase 97.0 0.0025 5.4E-08 66.8 8.3 106 115-225 107-251 (548)
25 PLN02161 beta-amylase 96.9 0.003 6.5E-08 65.9 8.4 110 111-225 113-261 (531)
26 PLN00197 beta-amylase; Provisi 96.9 0.0033 7.2E-08 66.2 8.5 106 115-225 127-271 (573)
27 PLN03059 beta-galactosidase; P 96.8 0.0094 2E-07 66.1 11.1 109 116-226 60-189 (840)
28 PLN02801 beta-amylase 96.7 0.0073 1.6E-07 63.1 9.5 98 115-215 37-173 (517)
29 COG3867 Arabinogalactan endo-1 96.6 0.11 2.5E-06 51.2 15.8 134 63-225 33-182 (403)
30 PF13204 DUF4038: Protein of u 96.5 0.023 5.1E-07 56.0 10.8 99 121-224 36-156 (289)
31 PLN02705 beta-amylase 96.4 0.011 2.5E-07 62.8 8.7 98 114-214 267-403 (681)
32 PLN02905 beta-amylase 96.4 0.014 3E-07 62.3 9.2 100 112-214 283-421 (702)
33 PF14587 Glyco_hydr_30_2: O-Gl 96.3 0.01 2.2E-07 60.5 7.4 80 146-226 95-185 (384)
34 COG3693 XynA Beta-1,4-xylanase 96.3 0.01 2.2E-07 59.0 6.9 86 135-226 66-153 (345)
35 PF02836 Glyco_hydro_2_C: Glyc 95.8 0.042 9.2E-07 53.9 9.0 92 114-224 35-132 (298)
36 PF14488 DUF4434: Domain of un 94.8 0.15 3.3E-06 46.2 8.5 103 115-225 20-131 (166)
37 PRK10150 beta-D-glucuronidase; 94.4 0.14 2.9E-06 55.6 8.5 93 116-225 314-419 (604)
38 KOG0496 Beta-galactosidase [Ca 94.4 0.16 3.4E-06 54.9 8.5 109 115-225 49-176 (649)
39 PF07488 Glyco_hydro_67M: Glyc 90.3 2 4.3E-05 42.8 9.4 87 114-213 56-150 (328)
40 PRK09525 lacZ beta-D-galactosi 90.1 1.2 2.6E-05 51.5 9.0 93 114-225 370-464 (1027)
41 PRK10340 ebgA cryptic beta-D-g 88.3 1.9 4.1E-05 49.9 8.9 90 114-225 354-451 (1021)
42 COG3250 LacZ Beta-galactosidas 87.1 3.6 7.8E-05 46.3 10.0 89 112-225 318-408 (808)
43 COG3664 XynB Beta-xylosidase [ 86.9 0.97 2.1E-05 46.5 5.0 100 124-228 14-118 (428)
44 smart00642 Aamy Alpha-amylase 83.9 2.8 6E-05 37.9 6.1 63 114-176 18-91 (166)
45 PF02638 DUF187: Glycosyl hydr 77.9 12 0.00026 37.3 8.8 95 116-212 20-154 (311)
46 PF03198 Glyco_hydro_72: Gluca 77.9 6.3 0.00014 39.4 6.6 48 116-177 54-101 (314)
47 TIGR00612 ispG_gcpE 1-hydroxy- 74.9 23 0.00049 35.9 9.6 89 107-209 74-162 (346)
48 PLN02361 alpha-amylase 74.2 6.1 0.00013 41.0 5.7 64 112-175 26-96 (401)
49 PF00128 Alpha-amylase: Alpha 73.7 6.4 0.00014 37.5 5.4 57 118-176 7-73 (316)
50 TIGR02402 trehalose_TreZ malto 73.5 14 0.00031 39.7 8.4 92 114-212 110-237 (542)
51 COG3934 Endo-beta-mannanase [C 71.9 1.8 4E-05 45.4 1.2 109 117-226 28-150 (587)
52 PLN00196 alpha-amylase; Provis 70.7 7.1 0.00015 40.8 5.3 62 114-175 43-112 (428)
53 TIGR01210 conserved hypothetic 70.6 15 0.00032 36.7 7.3 108 118-239 117-229 (313)
54 PF10566 Glyco_hydro_97: Glyco 69.6 18 0.0004 35.5 7.5 118 92-210 10-149 (273)
55 cd06593 GH31_xylosidase_YicI Y 69.4 29 0.00062 34.2 9.1 105 117-224 26-160 (308)
56 PF14871 GHL6: Hypothetical gl 69.4 19 0.00041 31.4 6.9 55 119-177 4-66 (132)
57 cd06592 GH31_glucosidase_KIAA1 68.0 29 0.00063 34.3 8.7 106 117-225 32-167 (303)
58 cd06601 GH31_lyase_GLase GLase 67.1 34 0.00074 34.5 9.2 80 149-230 58-140 (332)
59 PRK12313 glycogen branching en 67.1 25 0.00054 38.5 8.8 93 114-212 169-302 (633)
60 cd04733 OYE_like_2_FMN Old yel 66.9 1.4E+02 0.0031 29.8 16.3 151 139-313 63-245 (338)
61 KOG2233 Alpha-N-acetylglucosam 66.1 16 0.00036 38.6 6.6 112 114-225 77-249 (666)
62 PRK14041 oxaloacetate decarbox 65.8 23 0.0005 37.5 7.8 98 113-227 88-210 (467)
63 PRK05402 glycogen branching en 64.5 30 0.00064 38.6 8.9 96 117-212 267-397 (726)
64 cd02932 OYE_YqiM_FMN Old yello 64.2 1.6E+02 0.0035 29.4 16.0 39 140-178 62-100 (336)
65 cd06602 GH31_MGAM_SI_GAA This 64.0 38 0.00083 34.1 8.9 69 158-227 69-169 (339)
66 PRK05799 coproporphyrinogen II 63.0 19 0.00042 36.4 6.6 102 117-235 98-203 (374)
67 cd06543 GH18_PF-ChiA-like PF-C 62.6 36 0.00079 33.7 8.2 84 122-212 19-104 (294)
68 PRK14040 oxaloacetate decarbox 62.6 27 0.00058 38.2 7.8 98 113-227 90-212 (593)
69 cd07939 DRE_TIM_NifV Streptomy 62.5 24 0.00052 33.9 6.9 58 118-175 72-130 (259)
70 TIGR03581 EF_0839 conserved hy 62.1 20 0.00043 34.2 5.8 76 112-199 132-229 (236)
71 COG1523 PulA Type II secretory 61.8 16 0.00034 40.6 6.0 55 121-175 206-285 (697)
72 PF12876 Cellulase-like: Sugar 61.6 4.6 0.0001 32.3 1.4 19 207-225 1-22 (88)
73 PRK14706 glycogen branching en 61.2 29 0.00063 38.2 7.9 90 122-212 175-299 (639)
74 TIGR01515 branching_enzym alph 61.2 42 0.0009 36.7 9.1 99 114-212 155-288 (613)
75 PRK09441 cytoplasmic alpha-amy 60.8 12 0.00025 39.5 4.6 64 113-176 20-102 (479)
76 cd06591 GH31_xylosidase_XylS X 60.7 55 0.0012 32.6 9.3 79 149-228 60-164 (319)
77 COG0821 gcpE 1-hydroxy-2-methy 60.4 61 0.0013 32.9 9.2 86 110-209 79-164 (361)
78 cd03174 DRE_TIM_metallolyase D 60.3 28 0.00061 33.0 6.9 80 118-209 77-157 (265)
79 cd07945 DRE_TIM_CMS Leptospira 59.5 28 0.0006 34.2 6.7 83 116-209 75-158 (280)
80 cd02933 OYE_like_FMN Old yello 58.9 2.1E+02 0.0044 28.9 15.3 39 141-179 63-101 (338)
81 cd07937 DRE_TIM_PC_TC_5S Pyruv 58.7 53 0.0012 32.0 8.6 47 117-176 93-139 (275)
82 TIGR02403 trehalose_treC alpha 58.7 16 0.00034 39.3 5.3 62 114-176 26-96 (543)
83 cd06600 GH31_MGAM-like This fa 58.6 69 0.0015 31.9 9.5 78 149-227 58-164 (317)
84 cd06603 GH31_GANC_GANAB_alpha 58.6 57 0.0012 32.7 9.0 72 157-228 66-167 (339)
85 PLN02784 alpha-amylase 58.4 19 0.00042 40.8 5.9 64 112-175 518-588 (894)
86 cd06598 GH31_transferase_CtsZ 58.2 67 0.0014 31.9 9.3 107 119-227 28-168 (317)
87 PRK12858 tagatose 1,6-diphosph 58.1 37 0.00079 34.5 7.4 52 121-175 112-163 (340)
88 PRK14705 glycogen branching en 58.0 47 0.001 39.4 9.2 94 118-212 768-897 (1224)
89 cd07944 DRE_TIM_HOA_like 4-hyd 57.3 42 0.0009 32.6 7.5 47 118-177 85-131 (266)
90 PRK03705 glycogen debranching 57.1 23 0.00049 39.2 6.2 91 121-212 185-329 (658)
91 TIGR02090 LEU1_arch isopropylm 56.5 33 0.00072 34.9 7.0 108 116-227 72-198 (363)
92 PRK10785 maltodextrin glucosid 56.4 19 0.00042 39.1 5.5 54 117-176 181-247 (598)
93 cd02803 OYE_like_FMN_family Ol 55.9 85 0.0019 30.9 9.7 150 141-314 63-238 (327)
94 PF02065 Melibiase: Melibiase; 55.7 74 0.0016 33.0 9.4 96 117-212 60-183 (394)
95 PRK10933 trehalose-6-phosphate 55.1 33 0.00071 37.1 7.0 61 114-176 32-102 (551)
96 COG1501 Alpha-glucosidases, fa 54.7 41 0.0009 37.9 7.8 101 127-230 294-422 (772)
97 PRK00366 ispG 4-hydroxy-3-meth 54.4 82 0.0018 32.2 9.1 55 155-209 117-171 (360)
98 KOG1065 Maltase glucoamylase a 54.3 53 0.0012 37.0 8.4 103 121-229 317-454 (805)
99 PRK07379 coproporphyrinogen II 54.2 31 0.00068 35.5 6.4 105 117-237 114-221 (400)
100 TIGR00433 bioB biotin syntheta 54.0 35 0.00075 33.1 6.4 56 117-175 122-178 (296)
101 PRK05692 hydroxymethylglutaryl 54.0 50 0.0011 32.5 7.6 86 116-210 80-167 (287)
102 PRK12399 tagatose 1,6-diphosph 53.9 56 0.0012 33.0 7.8 89 121-218 111-202 (324)
103 PF12891 Glyco_hydro_44: Glyco 52.9 52 0.0011 31.8 7.2 121 154-298 23-186 (239)
104 PRK04161 tagatose 1,6-diphosph 52.5 61 0.0013 32.8 7.8 94 120-222 112-211 (329)
105 PRK09505 malS alpha-amylase; R 52.0 38 0.00081 37.7 6.9 63 117-179 232-318 (683)
106 PRK12581 oxaloacetate decarbox 51.4 58 0.0013 34.5 7.9 135 70-227 54-220 (468)
107 TIGR02629 L_rham_iso_rhiz L-rh 51.1 68 0.0015 33.4 8.1 88 118-219 73-171 (412)
108 PRK12331 oxaloacetate decarbox 50.6 62 0.0013 34.1 7.9 98 113-227 89-211 (448)
109 COG3534 AbfA Alpha-L-arabinofu 50.4 1.1E+02 0.0024 32.4 9.4 93 117-224 50-174 (501)
110 TIGR02660 nifV_homocitr homoci 50.3 46 0.00099 33.9 6.8 105 118-226 75-198 (365)
111 PRK08255 salicylyl-CoA 5-hydro 49.9 4.2E+02 0.0091 29.8 16.7 151 139-313 459-647 (765)
112 PLN02746 hydroxymethylglutaryl 49.2 53 0.0012 33.4 7.0 84 117-209 123-208 (347)
113 PRK14510 putative bifunctional 48.4 30 0.00065 41.1 5.7 63 114-176 184-268 (1221)
114 cd07948 DRE_TIM_HCS Saccharomy 48.0 30 0.00066 33.6 4.9 59 118-176 74-133 (262)
115 PF03659 Glyco_hydro_71: Glyco 47.7 85 0.0018 32.4 8.3 51 116-176 18-68 (386)
116 cd07943 DRE_TIM_HOA 4-hydroxy- 47.6 2E+02 0.0042 27.7 10.5 46 118-176 88-133 (263)
117 PF01120 Alpha_L_fucos: Alpha- 47.2 64 0.0014 32.5 7.3 59 121-179 97-162 (346)
118 TIGR02456 treS_nterm trehalose 46.9 54 0.0012 35.1 7.1 61 116-176 29-97 (539)
119 PF05089 NAGLU: Alpha-N-acetyl 46.8 33 0.00072 34.7 5.0 110 114-225 18-185 (333)
120 PRK09058 coproporphyrinogen II 46.5 77 0.0017 33.2 8.0 106 117-238 162-270 (449)
121 TIGR01108 oadA oxaloacetate de 46.1 73 0.0016 34.8 7.9 93 118-227 94-206 (582)
122 cd07941 DRE_TIM_LeuA3 Desulfob 45.0 1.7E+02 0.0036 28.5 9.6 61 118-178 81-142 (273)
123 PRK10605 N-ethylmaleimide redu 44.9 3.5E+02 0.0076 27.5 17.1 193 146-363 70-321 (362)
124 PLN02447 1,4-alpha-glucan-bran 44.7 42 0.00092 37.7 5.9 93 120-212 256-383 (758)
125 COG0366 AmyA Glycosidases [Car 44.4 28 0.00061 36.0 4.3 60 119-178 33-102 (505)
126 TIGR01232 lacD tagatose 1,6-di 44.4 79 0.0017 31.9 7.2 89 121-218 112-203 (325)
127 cd02929 TMADH_HD_FMN Trimethyl 43.8 3.7E+02 0.008 27.4 16.1 131 146-299 74-231 (370)
128 TIGR03217 4OH_2_O_val_ald 4-hy 43.8 2E+02 0.0043 29.0 10.2 94 117-226 89-201 (333)
129 cd06599 GH31_glycosidase_Aec37 43.8 1.6E+02 0.0034 29.3 9.4 77 149-226 67-171 (317)
130 cd07940 DRE_TIM_IPMS 2-isoprop 43.7 70 0.0015 30.9 6.7 77 118-209 72-154 (268)
131 PRK06294 coproporphyrinogen II 43.6 73 0.0016 32.4 7.1 93 118-227 103-199 (370)
132 cd06545 GH18_3CO4_chitinase Th 43.1 68 0.0015 30.6 6.5 74 134-212 26-99 (253)
133 PRK11858 aksA trans-homoaconit 42.7 73 0.0016 32.6 7.0 106 118-227 78-202 (378)
134 cd07938 DRE_TIM_HMGL 3-hydroxy 42.5 83 0.0018 30.7 7.0 84 117-209 75-160 (274)
135 TIGR01211 ELP3 histone acetylt 42.3 1.2E+02 0.0025 32.8 8.6 105 118-239 206-316 (522)
136 TIGR03471 HpnJ hopanoid biosyn 41.5 82 0.0018 33.0 7.3 75 118-206 287-364 (472)
137 COG3589 Uncharacterized conser 40.9 1.1E+02 0.0023 31.3 7.4 69 121-203 22-90 (360)
138 cd02874 GH18_CFLE_spore_hydrol 40.7 88 0.0019 30.7 7.0 84 121-212 16-103 (313)
139 PRK08446 coproporphyrinogen II 39.9 83 0.0018 31.7 6.8 93 118-226 98-193 (350)
140 TIGR03234 OH-pyruv-isom hydrox 39.9 66 0.0014 30.3 5.8 65 114-181 83-150 (254)
141 TIGR02100 glgX_debranch glycog 39.9 67 0.0015 35.7 6.6 56 121-176 190-266 (688)
142 PRK05628 coproporphyrinogen II 39.4 95 0.0021 31.5 7.2 105 117-237 107-214 (375)
143 PF07071 DUF1341: Protein of u 39.3 34 0.00074 32.3 3.5 52 113-172 133-206 (218)
144 TIGR01212 radical SAM protein, 38.9 96 0.0021 30.7 6.9 73 154-239 162-234 (302)
145 PRK08599 coproporphyrinogen II 38.6 1.4E+02 0.003 30.3 8.2 97 117-229 99-198 (377)
146 TIGR00539 hemN_rel putative ox 38.3 79 0.0017 31.9 6.4 94 117-226 99-195 (360)
147 TIGR02401 trehalose_TreY malto 38.3 44 0.00096 37.9 4.8 65 115-179 16-91 (825)
148 cd06604 GH31_glucosidase_II_Ma 37.8 2.3E+02 0.0049 28.4 9.5 69 157-227 66-163 (339)
149 cd06542 GH18_EndoS-like Endo-b 37.7 1E+02 0.0023 29.2 6.8 55 154-212 50-104 (255)
150 PRK10426 alpha-glucosidase; Pr 37.6 2.5E+02 0.0055 30.9 10.5 105 118-224 224-364 (635)
151 PRK12568 glycogen branching en 37.1 81 0.0018 35.4 6.6 98 114-212 268-401 (730)
152 PRK14511 maltooligosyl trehalo 36.8 69 0.0015 36.7 6.0 57 114-176 19-90 (879)
153 TIGR02630 xylose_isom_A xylose 36.1 5.4E+02 0.012 27.1 12.9 69 120-195 83-156 (434)
154 PRK05474 xylose isomerase; Pro 35.0 5.7E+02 0.012 27.0 13.0 69 120-195 84-157 (437)
155 PF01055 Glyco_hydro_31: Glyco 34.9 1.5E+02 0.0033 30.5 8.0 108 117-227 45-184 (441)
156 PRK08195 4-hyroxy-2-oxovalerat 34.6 1.4E+02 0.003 30.2 7.4 47 118-177 91-137 (337)
157 PF03511 Fanconi_A: Fanconi an 34.3 29 0.00063 26.4 1.8 39 139-179 19-57 (64)
158 PRK14507 putative bifunctional 34.2 1.2E+02 0.0027 37.2 7.8 66 114-179 757-833 (1693)
159 PRK07106 5-aminoimidazole-4-ca 33.4 58 0.0013 33.6 4.4 50 109-174 334-383 (390)
160 TIGR02635 RhaI_grampos L-rhamn 32.7 1.6E+02 0.0034 30.5 7.4 84 118-218 43-136 (378)
161 cd06525 GH25_Lyc-like Lyc mura 32.6 3E+02 0.0064 24.8 8.7 26 194-219 99-124 (184)
162 COG2100 Predicted Fe-S oxidore 32.3 1.4E+02 0.0031 30.4 6.7 82 111-208 197-284 (414)
163 PRK13523 NADPH dehydrogenase N 31.7 5.5E+02 0.012 25.8 13.1 142 146-313 72-236 (337)
164 PLN02389 biotin synthase 31.1 1.4E+02 0.0029 30.8 6.7 58 116-176 176-234 (379)
165 PF04914 DltD_C: DltD C-termin 31.0 1.5E+02 0.0032 25.9 6.0 58 154-215 35-92 (130)
166 smart00729 Elp3 Elongator prot 30.8 2.8E+02 0.0061 24.1 8.2 58 115-175 97-157 (216)
167 PLN02960 alpha-amylase 30.4 93 0.002 35.6 5.7 94 113-212 414-549 (897)
168 PRK12677 xylose isomerase; Pro 30.1 3.8E+02 0.0083 27.5 9.8 91 116-213 32-128 (384)
169 PRK12330 oxaloacetate decarbox 29.8 2E+02 0.0043 30.9 7.9 98 114-227 91-214 (499)
170 PTZ00445 p36-lilke protein; Pr 29.8 1E+02 0.0022 29.4 5.1 56 121-176 35-99 (219)
171 PRK09936 hypothetical protein; 29.4 3.4E+02 0.0074 27.1 8.8 63 116-186 39-101 (296)
172 PLN02925 4-hydroxy-3-methylbut 29.3 1.5E+02 0.0032 33.1 6.8 52 157-209 212-263 (733)
173 cd06595 GH31_xylosidase_XylS-l 29.2 1.8E+02 0.0039 28.5 7.0 77 149-227 68-163 (292)
174 cd07947 DRE_TIM_Re_CS Clostrid 28.8 1.3E+02 0.0029 29.5 6.0 60 116-175 75-135 (279)
175 PRK09282 pyruvate carboxylase 28.4 2.1E+02 0.0046 31.3 7.9 94 117-227 98-211 (592)
176 cd02930 DCR_FMN 2,4-dienoyl-Co 28.3 6.2E+02 0.013 25.4 13.6 145 146-313 68-233 (353)
177 TIGR00538 hemN oxygen-independ 28.3 57 0.0012 34.1 3.5 61 117-181 150-213 (455)
178 cd06565 GH20_GcnA-like Glycosy 27.8 2.4E+02 0.0051 27.9 7.6 61 117-184 19-86 (301)
179 cd02742 GH20_hexosaminidase Be 27.1 4E+02 0.0087 26.2 9.1 62 117-184 18-98 (303)
180 PF00682 HMGL-like: HMGL-like 27.0 1.6E+02 0.0035 27.5 6.0 79 118-210 66-149 (237)
181 PRK07094 biotin synthase; Prov 26.9 1.1E+02 0.0024 30.1 5.2 57 116-175 127-185 (323)
182 PRK05904 coproporphyrinogen II 26.6 1.8E+02 0.0039 29.5 6.6 92 118-226 103-198 (353)
183 TIGR02102 pullulan_Gpos pullul 26.2 3.5E+02 0.0076 32.0 9.5 59 154-212 554-635 (1111)
184 PRK11572 copper homeostasis pr 25.9 1.9E+02 0.0041 28.1 6.3 42 114-164 72-113 (248)
185 TIGR00355 purH phosphoribosyla 25.7 83 0.0018 33.7 4.1 55 108-178 454-509 (511)
186 PF04646 DUF604: Protein of un 25.6 29 0.00063 33.8 0.7 72 164-238 77-148 (255)
187 smart00812 Alpha_L_fucos Alpha 25.5 2.4E+02 0.0053 29.0 7.4 53 121-174 87-147 (384)
188 PLN02923 xylose isomerase 25.5 8.3E+02 0.018 25.9 12.6 73 121-201 129-206 (478)
189 cd06589 GH31 The enzymes of gl 25.4 2.5E+02 0.0054 26.9 7.2 90 118-227 27-120 (265)
190 PRK10658 putative alpha-glucos 25.3 4.3E+02 0.0092 29.4 9.7 103 121-225 289-420 (665)
191 PRK13347 coproporphyrinogen II 25.1 72 0.0016 33.4 3.6 60 117-181 151-214 (453)
192 TIGR02631 xylA_Arthro xylose i 24.8 4.5E+02 0.0098 27.0 9.3 95 113-214 30-130 (382)
193 COG0138 PurH AICAR transformyl 24.7 99 0.0021 33.0 4.3 55 108-178 458-513 (515)
194 PRK08208 coproporphyrinogen II 24.7 2.8E+02 0.006 28.8 7.8 91 117-225 140-235 (430)
195 TIGR02026 BchE magnesium-proto 24.6 2.2E+02 0.0048 30.1 7.2 61 117-181 286-348 (497)
196 PRK01060 endonuclease IV; Prov 24.3 3.3E+02 0.0071 25.9 7.8 52 115-171 12-63 (281)
197 cd06594 GH31_glucosidase_YihQ 24.2 6.7E+02 0.015 24.8 10.2 67 157-225 73-168 (317)
198 PHA02152 hypothetical protein 23.9 45 0.00098 26.8 1.3 36 80-127 42-78 (96)
199 PTZ00445 p36-lilke protein; Pr 23.9 1.1E+02 0.0023 29.3 4.0 51 155-209 29-89 (219)
200 PF13812 PPR_3: Pentatricopept 23.8 54 0.0012 20.2 1.5 15 157-171 20-34 (34)
201 COG3142 CutC Uncharacterized p 23.3 2.4E+02 0.0052 27.2 6.3 43 114-165 72-114 (241)
202 cd00019 AP2Ec AP endonuclease 23.2 3.7E+02 0.008 25.6 7.9 54 115-173 10-64 (279)
203 TIGR00674 dapA dihydrodipicoli 22.9 4.1E+02 0.0089 25.7 8.2 67 146-226 13-79 (285)
204 cd07938 DRE_TIM_HMGL 3-hydroxy 22.4 6.9E+02 0.015 24.2 9.7 91 117-226 116-206 (274)
205 PRK12465 xylose isomerase; Pro 22.4 5.9E+02 0.013 26.8 9.3 71 118-195 92-167 (445)
206 PRK09856 fructoselysine 3-epim 21.9 1E+02 0.0022 29.3 3.8 60 114-174 89-148 (275)
207 cd02871 GH18_chitinase_D-like 21.9 2.5E+02 0.0055 27.7 6.6 50 156-212 61-110 (312)
208 PRK05692 hydroxymethylglutaryl 21.8 5.7E+02 0.012 25.1 9.0 91 116-225 121-211 (287)
209 PRK06256 biotin synthase; Vali 21.4 1.5E+02 0.0033 29.3 5.0 57 116-175 150-207 (336)
210 PF04028 DUF374: Domain of unk 21.0 2.6E+02 0.0057 21.9 5.1 40 122-175 27-66 (74)
211 TIGR00542 hxl6Piso_put hexulos 21.0 1.3E+02 0.0029 28.7 4.3 61 114-176 93-154 (279)
212 PRK05660 HemN family oxidoredu 20.4 2.4E+02 0.0053 28.7 6.3 94 117-226 106-202 (378)
213 PRK09249 coproporphyrinogen II 20.2 1.2E+02 0.0025 31.8 4.0 61 117-181 150-213 (453)
214 smart00052 EAL Putative diguan 20.0 2.1E+02 0.0046 26.0 5.3 62 108-174 148-209 (241)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-100 Score=780.60 Aligned_cols=334 Identities=57% Similarity=1.039 Sum_probs=313.3
Q ss_pred cCccCCCCCCCeehhhhhhhhhcCCCCCCCCCCccccccccc-C-ccCC--CCCcCCccccCcHHHHHHHHHcCCCceee
Q 046009 59 EYSKRDFPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFTHA-G-NVHD--NGDIASDGYHKYKEDVKLMADTGLDAYRF 134 (398)
Q Consensus 59 ~~~~~~fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~-~-~~~~--~~~~a~d~y~~y~eDi~l~~~lG~~~~R~ 134 (398)
.+.+..||++|+||+||||||+|||+++|||++|+||.|+|. + ++.+ ++|+|||+||||+|||+||++||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 355889999999999999999999999999999999999987 4 4333 78999999999999999999999999999
Q ss_pred cccccccccCCC--CCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 046009 135 SISWSRLIPNGR--GPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 135 sI~Wsri~P~g~--g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fg 212 (398)
||+||||+|.|+ +.+|++|+++|+++|++|+++||+|+|||+|||+|++|+|+||||+|++++++|.+||+.||++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999997 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEccCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEEEe
Q 046009 213 DRVSYWTTVNEPNAFALLGYDIGIAPPKRCSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQDKQHGYIGMSI 292 (398)
Q Consensus 213 d~V~~w~t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~~~~gkIGi~~ 292 (398)
|+||.|+|+|||++++..||..|..|||+|+....+|+.|+|++++|.|.|||++|||+||++||+.++..|+|+||+++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999999987667999999999999999999999999999999999888999999999
Q ss_pred ecCccccCCCCHHHHHHHHHHhhccccccccceecccCCchhHHhhccCCCCCCHhHHHHhcCCCcEEEEeccccccccc
Q 046009 293 FTYGLLPLTNSTEDAIATQRYNDFLVGWIANPLVYGDYPNIMKKNVGSRLPLFTYLESKQVKGSADFLGVNNYNSGYIKD 372 (398)
Q Consensus 293 ~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~~~lp~~t~eD~e~ikgt~DFiGiNYYts~~V~~ 372 (398)
...|++|.+++++|.+||+|+.+|..+|+++|++.|+||+.|++.+++|||+||++|.+.+||+.||+|||||++.+|++
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999998
Q ss_pred CCCCCccCCCCcccccceee
Q 046009 373 NPSSLKQELRDWNADTAAEI 392 (398)
Q Consensus 373 ~~~~~~~~~~~~~~d~~~~~ 392 (398)
.+.+..++.+.+..|..+.+
T Consensus 351 ~~~~~~~~~~~~~~d~~~~~ 370 (524)
T KOG0626|consen 351 LKPPPDPSQPGWSTDSGVDW 370 (524)
T ss_pred cCCCCCCCCcccccccceee
Confidence 76543333355556655443
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=2.4e-94 Score=749.62 Aligned_cols=318 Identities=64% Similarity=1.169 Sum_probs=292.1
Q ss_pred CCCcCcCccCCCCCCCeehhhhhhhhhcCCCCCCCCCCcccccccccCccCCCCCcCCccccCcHHHHHHHHHcCCCcee
Q 046009 54 PLAADEYSKRDFPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFTHAGNVHDNGDIASDGYHKYKEDVKLMADTGLDAYR 133 (398)
Q Consensus 54 ~~~~~~~~~~~fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~R 133 (398)
+.++..+.+.+||++|+||+|||||||||++++||||+|+||.+++.+. ..++++||||||||+|||+|||+||+++||
T Consensus 19 ~~~~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~-~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYR 97 (503)
T PLN02849 19 GKCSSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN-MSNGDIACDGYHKYKEDVKLMVETGLDAFR 97 (503)
T ss_pred ccccCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC-CCCCCccccHHHhHHHHHHHHHHcCCCeEE
Confidence 3456667788899999999999999999999999999999999987531 137889999999999999999999999999
Q ss_pred ecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhCC
Q 046009 134 FSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFGD 213 (398)
Q Consensus 134 ~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fgd 213 (398)
|||+|+||+|+|.|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++|||
T Consensus 98 fSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgD 177 (503)
T PLN02849 98 FSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGN 177 (503)
T ss_pred EeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEccCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEEEee
Q 046009 214 RVSYWTTVNEPNAFALLGYDIGIAPPKRCSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQDKQHGYIGMSIF 293 (398)
Q Consensus 214 ~V~~w~t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~~~~gkIGi~~~ 293 (398)
+|++|+|||||++++..||..|.+|||.+.....+|..+++.++.++++||+++|||+||+++|++.+..++++||++++
T Consensus 178 rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~ 257 (503)
T PLN02849 178 HVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLF 257 (503)
T ss_pred cCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 99999999999999999999999999964311112333344567899999999999999999999754346789999999
Q ss_pred cCccccCCCCHHHHHHHHHHhhccccccccceecccCCchhHHhhccCCCCCCHhHHHHhcCCCcEEEEeccccccccc
Q 046009 294 TYGLLPLTNSTEDAIATQRYNDFLVGWIANPLVYGDYPNIMKKNVGSRLPLFTYLESKQVKGSADFLGVNNYNSGYIKD 372 (398)
Q Consensus 294 ~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~~~lp~~t~eD~e~ikgt~DFiGiNYYts~~V~~ 372 (398)
..++||.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.++++|+++|++++||||||||++.+|+.
T Consensus 258 ~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~ 336 (503)
T PLN02849 258 ALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTN 336 (503)
T ss_pred CceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhccc
Confidence 9999999999999999999999999999999999999999999998889999999999999999999999999999975
No 3
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.9e-93 Score=741.98 Aligned_cols=327 Identities=71% Similarity=1.239 Sum_probs=295.9
Q ss_pred HHHHhCCCCCCCcCcCccCCCCCCCeehhhhhhhhhcCCCCCCCCCCcccccccccCccC-CCCCcCCccccCcHHHHHH
Q 046009 45 LLNLAAPGLPLAADEYSKRDFPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFTHAGNVH-DNGDIASDGYHKYKEDVKL 123 (398)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~~~~~-~~~~~a~d~y~~y~eDi~l 123 (398)
|+++++.. .++..+.+.+||++|+||+||||||+||++++||||+|+||.+++.+... .++++||||||||+|||+|
T Consensus 13 ~~~~~~~~--~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~a~D~Yhry~EDi~l 90 (497)
T PLN02998 13 LLALALTA--VSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAHAGHSGVAAGNVACDQYHKYKEDVKL 90 (497)
T ss_pred HHHhcccc--cccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccccCcCCCCCCcccccHHHhhHHHHHH
Confidence 45554332 23333566789999999999999999999999999999999998754222 2778999999999999999
Q ss_pred HHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHH
Q 046009 124 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAY 203 (398)
Q Consensus 124 ~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~y 203 (398)
||+||+++|||||+||||+|+|.|.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++|
T Consensus 91 mk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~Y 170 (497)
T PLN02998 91 MADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAY 170 (497)
T ss_pred HHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHH
Confidence 99999999999999999999998999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCceeEEEccCchhhhhcccccCCCCCCCCCCCCC-CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCC
Q 046009 204 ANVCFREFGDRVSYWTTVNEPNAFALLGYDIGIAPPKRCSPPFK-NCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQD 282 (398)
Q Consensus 204 a~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~g~~~Pg~~~~~~~-~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~ 282 (398)
|++|+++|||+|++|+|||||++++..||..|.+|||.+..... +|..+++.++.+|++||+++|||+||+++|+.++.
T Consensus 171 A~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~ 250 (497)
T PLN02998 171 ADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKY 250 (497)
T ss_pred HHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999996431110 24445555678999999999999999999998654
Q ss_pred CCcceEEEEeecCccccCCCCHHHHHHHHHHhhccccccccceecccCCchhHHhhccCCCCCCHhHHHHhcCCCcEEEE
Q 046009 283 KQHGYIGMSIFTYGLLPLTNSTEDAIATQRYNDFLVGWIANPLVYGDYPNIMKKNVGSRLPLFTYLESKQVKGSADFLGV 362 (398)
Q Consensus 283 ~~~gkIGi~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~~~lp~~t~eD~e~ikgt~DFiGi 362 (398)
.|+++||++++..++||.+++|+|++||++++++.++||+||+++|+||+.|++.+++++|.++++|+++|++++|||||
T Consensus 251 ~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGi 330 (497)
T PLN02998 251 KQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGV 330 (497)
T ss_pred CCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEE
Confidence 56799999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred ecccccccccC
Q 046009 363 NNYNSGYIKDN 373 (398)
Q Consensus 363 NYYts~~V~~~ 373 (398)
|||++.+|+..
T Consensus 331 NyYts~~v~~~ 341 (497)
T PLN02998 331 INYMALYVKDN 341 (497)
T ss_pred chhcCcccccC
Confidence 99999999863
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.8e-92 Score=735.81 Aligned_cols=312 Identities=62% Similarity=1.109 Sum_probs=286.8
Q ss_pred CccCCCCCCCeehhhhhhhhhcCCCCCCCCCCcccccccccCccCCCCCcCCccccCcHHHHHHHHHcCCCceeeccccc
Q 046009 60 YSKRDFPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFTHAGNVHDNGDIASDGYHKYKEDVKLMADTGLDAYRFSISWS 139 (398)
Q Consensus 60 ~~~~~fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~R~sI~Ws 139 (398)
+.+.+||++|+||+||||||+||++++||||+|+||.+++.. ..+++++||||||||+|||+|||+||+++|||||+||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~~-~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSIsWs 101 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHCY-NGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSISWS 101 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeecc-CCCCCCccccHHHhhHHHHHHHHHcCCCEEEEeccHh
Confidence 445779999999999999999999999999999999998631 1137889999999999999999999999999999999
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEE
Q 046009 140 RLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFGDRVSYWT 219 (398)
Q Consensus 140 ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~ 219 (398)
||+|+|+|.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+.|+++|||+|++|+
T Consensus 102 RI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~Wi 181 (504)
T PLN02814 102 RLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWT 181 (504)
T ss_pred hcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEE
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCchhhhhcccccCCCCCCCCCCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeecCccc
Q 046009 220 TVNEPNAFALLGYDIGIAPPKRCSPPF-KNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQDKQHGYIGMSIFTYGLL 298 (398)
Q Consensus 220 t~NEP~~~~~~gy~~g~~~Pg~~~~~~-~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~~~~gkIGi~~~~~~~y 298 (398)
|||||++++..||..|.. ||.+.... .+|..+++.++.++++||+++|||+||+++|++++..|+++||++++..++|
T Consensus 182 T~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~~~~ 260 (504)
T PLN02814 182 TINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAFGLS 260 (504)
T ss_pred eccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCceee
Confidence 999999999999999884 87644211 1343344556789999999999999999999976555689999999999999
Q ss_pred cCCCCHHHHHHHHHHhhccccccccceecccCCchhHHhhccCCCCCCHhHHHHhcCCCcEEEEecccccccccC
Q 046009 299 PLTNSTEDAIATQRYNDFLVGWIANPLVYGDYPNIMKKNVGSRLPLFTYLESKQVKGSADFLGVNNYNSGYIKDN 373 (398)
Q Consensus 299 P~s~~p~D~~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~~~lp~~t~eD~e~ikgt~DFiGiNYYts~~V~~~ 373 (398)
|++++|+|++||++++++.++||+||++.|+||+.|++.+++++|.++++|+++|++++||||||||++.+|+..
T Consensus 261 P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~ 335 (504)
T PLN02814 261 PYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNR 335 (504)
T ss_pred cCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccC
Confidence 999999999999999999999999999999999999999998999999999999999999999999999999753
No 5
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-89 Score=694.67 Aligned_cols=298 Identities=41% Similarity=0.754 Sum_probs=278.3
Q ss_pred CCCCCCCeehhhhhhhhhcCCCCCCCCCCccccccccc---CccCC--CCCcCCccccCcHHHHHHHHHcCCCceeeccc
Q 046009 63 RDFPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFTHA---GNVHD--NGDIASDGYHKYKEDVKLMADTGLDAYRFSIS 137 (398)
Q Consensus 63 ~~fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~---~~~~~--~~~~a~d~y~~y~eDi~l~~~lG~~~~R~sI~ 137 (398)
.+||++|+||+||||+|+|||+++||||+|+||.|++. ++... .++.||||||||+|||+|||+||+++||+||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 46999999999999999999999999999999999983 33332 78999999999999999999999999999999
Q ss_pred ccccccCCCC-CCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCce
Q 046009 138 WSRLIPNGRG-PVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFGDRVS 216 (398)
Q Consensus 138 Wsri~P~g~g-~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fgd~V~ 216 (398)
||||+|+|.+ ++|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|+++++.|++||++||+||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999866 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeecCc
Q 046009 217 YWTTVNEPNAFALLGYDIGIAPPKRCSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQDKQHGYIGMSIFTYG 296 (398)
Q Consensus 217 ~w~t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~~~~gkIGi~~~~~~ 296 (398)
+|+||||||+.+..||+.|.+||+..+ .+.++||+||+++|||+|++++|++.+. .||||+++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~-----------~~~~~qa~hh~~lA~A~avk~~~~~~~~---~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD-----------PKAAYQVAHHMLLAHALAVKAIKKINPK---GKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC-----------HHHHHHHHHHHHHHHHHHHHHHHhhCCc---CceEEEeccCc
Confidence 999999999999999999999999754 3578999999999999999999998763 28999999999
Q ss_pred cccCCCCHHHHHHHHHHhhccccccccceecccCCchhHHhhccC--CCCCCHhHHHHhcC-CCcEEEEeccc-cccccc
Q 046009 297 LLPLTNSTEDAIATQRYNDFLVGWIANPLVYGDYPNIMKKNVGSR--LPLFTYLESKQVKG-SADFLGVNNYN-SGYIKD 372 (398)
Q Consensus 297 ~yP~s~~p~D~~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~~~--lp~~t~eD~e~ikg-t~DFiGiNYYt-s~~V~~ 372 (398)
.||.|++|+|+.||++++++.+++|+||+++|+||.++.+.+++. +|+++++|+++||. ++||||||||+ +.+++.
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999999876 79999999999985 79999999999 555554
Q ss_pred CC
Q 046009 373 NP 374 (398)
Q Consensus 373 ~~ 374 (398)
.+
T Consensus 308 ~~ 309 (460)
T COG2723 308 EP 309 (460)
T ss_pred cC
Confidence 44
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=3.6e-88 Score=699.38 Aligned_cols=293 Identities=33% Similarity=0.598 Sum_probs=272.0
Q ss_pred CCCCCCCeehhhhhhhhhcCCCCCCCCCCccccccccc-CccCCCCCcCCccccCcHHHHHHHHHcCCCceeeccccccc
Q 046009 63 RDFPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFTHA-GNVHDNGDIASDGYHKYKEDVKLMADTGLDAYRFSISWSRL 141 (398)
Q Consensus 63 ~~fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~-~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri 141 (398)
.+||++|+||+|||||||||+++++|||+|+||.+++. +.. ++++||||||||+|||+||++||+++|||||+||||
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~~--~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI 79 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYWY--TAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSRI 79 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCCC--CCCccCchhhhHHHHHHHHHHcCCCEEEEecchhhc
Confidence 35999999999999999999999999999999998864 222 678999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEc
Q 046009 142 IPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFGDRVSYWTTV 221 (398)
Q Consensus 142 ~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~ 221 (398)
+|+|.|.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||++|+++||| |++|+||
T Consensus 80 ~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT~ 157 (467)
T TIGR01233 80 FPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTTF 157 (467)
T ss_pred cCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEe
Confidence 9998899999999999999999999999999999999999999976 9999999999999999999999998 9999999
Q ss_pred cCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeecCccccCC
Q 046009 222 NEPNAFALLGYDIGIAPPKRCSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQDKQHGYIGMSIFTYGLLPLT 301 (398)
Q Consensus 222 NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~~~~gkIGi~~~~~~~yP~s 301 (398)
|||++++..||+.|.+|||.+.. .++.+|++||+++|||+||+++|++. ++++||++++..++||++
T Consensus 158 NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~ 224 (467)
T TIGR01233 158 NEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYD 224 (467)
T ss_pred cchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECC
Confidence 99999999999999999995321 13679999999999999999999974 468999999999999998
Q ss_pred -CCHHHHHHHHHHhhccccccccceecccCCchhHHhhcc----C--CCCCCHhHHHHh---cCCCcEEEEecccccccc
Q 046009 302 -NSTEDAIATQRYNDFLVGWIANPLVYGDYPNIMKKNVGS----R--LPLFTYLESKQV---KGSADFLGVNNYNSGYIK 371 (398)
Q Consensus 302 -~~p~D~~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~~----~--lp~~t~eD~e~i---kgt~DFiGiNYYts~~V~ 371 (398)
++|+|++||++++++.++||+||+++|+||+.|++.++. + .|.+|++|+++| ++++||||||||++.+|+
T Consensus 225 ~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~ 304 (467)
T TIGR01233 225 PENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQ 304 (467)
T ss_pred CCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeec
Confidence 899999999999999999999999999999999987753 2 378999999999 489999999999999997
Q ss_pred c
Q 046009 372 D 372 (398)
Q Consensus 372 ~ 372 (398)
.
T Consensus 305 ~ 305 (467)
T TIGR01233 305 A 305 (467)
T ss_pred c
Confidence 5
No 7
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=3.5e-88 Score=700.49 Aligned_cols=294 Identities=35% Similarity=0.630 Sum_probs=272.6
Q ss_pred CCCCCCCeehhhhhhhhhcCCCCCCCCCCccccccccc-CccCCCCCcCCccccCcHHHHHHHHHcCCCceeeccccccc
Q 046009 63 RDFPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFTHA-GNVHDNGDIASDGYHKYKEDVKLMADTGLDAYRFSISWSRL 141 (398)
Q Consensus 63 ~~fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~-~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri 141 (398)
.+||++|+||+||||||+||++++||||+|+||.+++. ++. ++++||||||||+|||+|||+||+++|||||+||||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~--~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI 80 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF--TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWSRI 80 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC--CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHhhc
Confidence 35999999999999999999999999999999999875 332 789999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEc
Q 046009 142 IPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFGDRVSYWTTV 221 (398)
Q Consensus 142 ~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~ 221 (398)
+|+|+|.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||++|+++||| |++|+||
T Consensus 81 ~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~T~ 158 (469)
T PRK13511 81 FPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWTTF 158 (469)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEEc
Confidence 9998889999999999999999999999999999999999999976 9999999999999999999999999 9999999
Q ss_pred cCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeecCccccCC
Q 046009 222 NEPNAFALLGYDIGIAPPKRCSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQDKQHGYIGMSIFTYGLLPLT 301 (398)
Q Consensus 222 NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~~~~gkIGi~~~~~~~yP~s 301 (398)
|||++++..||..|.+|||++.. .++.++++||+++|||+||+++|++. |+++||++++..++||.+
T Consensus 159 NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~ 225 (469)
T PRK13511 159 NEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPID 225 (469)
T ss_pred cchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCC
Confidence 99999999999999999996421 13679999999999999999999974 468999999999999999
Q ss_pred -CCHHHHHHHHHHhhccccccccceecccCCchhHHhhc----c-C-CCCCCHhHHHHhcC---CCcEEEEecccccccc
Q 046009 302 -NSTEDAIATQRYNDFLVGWIANPLVYGDYPNIMKKNVG----S-R-LPLFTYLESKQVKG---SADFLGVNNYNSGYIK 371 (398)
Q Consensus 302 -~~p~D~~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~----~-~-lp~~t~eD~e~ikg---t~DFiGiNYYts~~V~ 371 (398)
++|+|++||++++++.++||+||+++|+||+.|++.++ + . .|++|++|+++|++ ++||||||||++.+|+
T Consensus 226 ~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~ 305 (469)
T PRK13511 226 PDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMR 305 (469)
T ss_pred CCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceee
Confidence 89999999999999999999999999999999998774 2 1 35899999999974 6899999999999997
Q ss_pred cC
Q 046009 372 DN 373 (398)
Q Consensus 372 ~~ 373 (398)
..
T Consensus 306 ~~ 307 (469)
T PRK13511 306 AY 307 (469)
T ss_pred cC
Confidence 53
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=8.9e-88 Score=697.88 Aligned_cols=296 Identities=31% Similarity=0.503 Sum_probs=269.5
Q ss_pred CCCCCCCeehhhhhhhhhcCCCCCCCCCCccccccccc-Ccc---C----------C---CCCcCCccccCcHHHHHHHH
Q 046009 63 RDFPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFTHA-GNV---H----------D---NGDIASDGYHKYKEDVKLMA 125 (398)
Q Consensus 63 ~~fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~-~~~---~----------~---~~~~a~d~y~~y~eDi~l~~ 125 (398)
.+||++|+||+|||||||||++++||||+|+||++++. +++ . + ++++||||||||+|||+||+
T Consensus 4 ~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm~ 83 (478)
T PRK09593 4 MPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALFA 83 (478)
T ss_pred ccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHHH
Confidence 45999999999999999999999999999999998874 322 1 1 46889999999999999999
Q ss_pred HcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHH
Q 046009 126 DTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYA 204 (398)
Q Consensus 126 ~lG~~~~R~sI~Wsri~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya 204 (398)
+||+++|||||+||||+|+| .|.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||
T Consensus 84 ~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~YA 163 (478)
T PRK09593 84 EMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERLC 163 (478)
T ss_pred HcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHHH
Confidence 99999999999999999998 46799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCceeEEEccCchhhhhcccc-cCC-CCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCC
Q 046009 205 NVCFREFGDRVSYWTTVNEPNAFALLGYD-IGI-APPKRCSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQD 282 (398)
Q Consensus 205 ~~~~~~fgd~V~~w~t~NEP~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~ 282 (398)
++|+++|||+|++|+|||||++++..||. .|. +|||... ..+.++++||+++|||+||+++|+..
T Consensus 164 ~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a~h~~llAHa~A~~~~~~~~-- 230 (478)
T PRK09593 164 RTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQAAHHELVASAIATKIAHEVD-- 230 (478)
T ss_pred HHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 99999999999999999999999988886 444 3676421 24679999999999999999999864
Q ss_pred CCcceEEEEeecCccccCCCCHHHHHHHHHHhhccccccccceecccCCchhHHhhccC--CCCCCHhHHHHhc-CCCcE
Q 046009 283 KQHGYIGMSIFTYGLLPLTNSTEDAIATQRYNDFLVGWIANPLVYGDYPNIMKKNVGSR--LPLFTYLESKQVK-GSADF 359 (398)
Q Consensus 283 ~~~gkIGi~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~~~--lp~~t~eD~e~ik-gt~DF 359 (398)
|++|||++++..++||.+++|+|++||++++ +.++||+||+++|+||+.|++.++++ .|.|+++|+++|+ +++||
T Consensus 231 -~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DF 308 (478)
T PRK09593 231 -PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDF 308 (478)
T ss_pred -CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 4689999999999999999999999999987 45789999999999999999999753 6889999999996 89999
Q ss_pred EEEecccccccccC
Q 046009 360 LGVNNYNSGYIKDN 373 (398)
Q Consensus 360 iGiNYYts~~V~~~ 373 (398)
||||||++.+|+..
T Consensus 309 lGiNyYt~~~v~~~ 322 (478)
T PRK09593 309 ISFSYYSSRVASGD 322 (478)
T ss_pred EEEecccCcccccC
Confidence 99999999999854
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=4.7e-87 Score=692.17 Aligned_cols=294 Identities=33% Similarity=0.554 Sum_probs=264.6
Q ss_pred CCCCCCeehhhhhhhhhcCCCCCCCCCCccccccc---cc--CccC-----C---CCCcCCccccCcHHHHHHHHHcCCC
Q 046009 64 DFPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFT---HA--GNVH-----D---NGDIASDGYHKYKEDVKLMADTGLD 130 (398)
Q Consensus 64 ~fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~---~~--~~~~-----~---~~~~a~d~y~~y~eDi~l~~~lG~~ 130 (398)
+||++|+||+||||||+||++++||||+|+||.++ +. +++. + ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 49999999999999999999999999999999998 31 2221 1 3688999999999999999999999
Q ss_pred ceeecccccccccCCC-CCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHH
Q 046009 131 AYRFSISWSRLIPNGR-GPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFR 209 (398)
Q Consensus 131 ~~R~sI~Wsri~P~g~-g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~ 209 (398)
+|||||+||||+|+|. |.+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||++||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999984 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCceeEEEccCchhhhhc-----ccc-cCC-CCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCC
Q 046009 210 EFGDRVSYWTTVNEPNAFALL-----GYD-IGI-APPKRCSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQD 282 (398)
Q Consensus 210 ~fgd~V~~w~t~NEP~~~~~~-----gy~-~g~-~~Pg~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~ 282 (398)
+|||+|++|+|||||++++.. ||. .|. +|||... ....||++||+++|||+||+++|++.+
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~~~~~~~h~~llAha~A~~~~~~~~~- 230 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQIMYQAAHYELVASALAVKTGHEINP- 230 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hHHHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 999999999999999998766 444 343 2555311 235799999999999999999999754
Q ss_pred CCcceEEEEeecCccccCCCCHHHHHHHHHHhhccccccccceecccCCchhHHhhccC--CCCCCHhHHHHh-cCCCcE
Q 046009 283 KQHGYIGMSIFTYGLLPLTNSTEDAIATQRYNDFLVGWIANPLVYGDYPNIMKKNVGSR--LPLFTYLESKQV-KGSADF 359 (398)
Q Consensus 283 ~~~gkIGi~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~~~--lp~~t~eD~e~i-kgt~DF 359 (398)
+++||++++..++||.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|.+|++|+++| ++++||
T Consensus 231 --~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 231 --DFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred --CCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 57999999999999999999999999998854 679999999999999999999874 479999999999 589999
Q ss_pred EEEeccccccccc
Q 046009 360 LGVNNYNSGYIKD 372 (398)
Q Consensus 360 iGiNYYts~~V~~ 372 (398)
||||||++.+|+.
T Consensus 308 lGiNyYts~~v~~ 320 (476)
T PRK09589 308 IGFSYYMSFATKF 320 (476)
T ss_pred EEEecccCccccc
Confidence 9999999999975
No 10
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=7.3e-88 Score=696.76 Aligned_cols=298 Identities=52% Similarity=0.972 Sum_probs=272.3
Q ss_pred CCCCCCCeehhhhhhhhhcCCCCCCCCCCccccccccc-CccCC--CCCcCCccccCcHHHHHHHHHcCCCceeeccccc
Q 046009 63 RDFPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFTHA-GNVHD--NGDIASDGYHKYKEDVKLMADTGLDAYRFSISWS 139 (398)
Q Consensus 63 ~~fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~-~~~~~--~~~~a~d~y~~y~eDi~l~~~lG~~~~R~sI~Ws 139 (398)
.+||++|+||+|||||||||++++||||+|+||.|++. +++.+ ++++||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 56999999999999999999999999999999999987 55443 6899999999999999999999999999999999
Q ss_pred ccccCC-CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceeE
Q 046009 140 RLIPNG-RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFGDRVSYW 218 (398)
Q Consensus 140 ri~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w 218 (398)
||+|+| .|.+|++|+++|+++|++|+++||+|+|||+|||+|+||++ +|||+|+++++.|++||++|+++|||+|++|
T Consensus 83 Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 161 (455)
T PF00232_consen 83 RIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYW 161 (455)
T ss_dssp HHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEE
T ss_pred heeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 999998 89999999999999999999999999999999999999997 7999999999999999999999999999999
Q ss_pred EEccCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeecCccc
Q 046009 219 TTVNEPNAFALLGYDIGIAPPKRCSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQDKQHGYIGMSIFTYGLL 298 (398)
Q Consensus 219 ~t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~~~~gkIGi~~~~~~~y 298 (398)
+|||||++.+..||+.|.+|||..+ ..+.++++||+++|||+||+++|+++ +++|||++++..+++
T Consensus 162 ~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~ 227 (455)
T PF00232_consen 162 ITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFY 227 (455)
T ss_dssp EEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEE
T ss_pred Eeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccC
Confidence 9999999999999999999999543 35789999999999999999999986 469999999999999
Q ss_pred cCCCCHHHH-HHHHHHhhccccccccceecccCCchhHHhhccC--CCCCCHhHHHHhcCCCcEEEEecccccccccCCC
Q 046009 299 PLTNSTEDA-IATQRYNDFLVGWIANPLVYGDYPNIMKKNVGSR--LPLFTYLESKQVKGSADFLGVNNYNSGYIKDNPS 375 (398)
Q Consensus 299 P~s~~p~D~-~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~~~--lp~~t~eD~e~ikgt~DFiGiNYYts~~V~~~~~ 375 (398)
|.+++++|. +||++.+++.++||+||+++|+||..|++.++++ +|.||++|++.|++++||||||||++.+|+..+.
T Consensus 228 P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~ 307 (455)
T PF00232_consen 228 PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPN 307 (455)
T ss_dssp ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSS
T ss_pred CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcc
Confidence 999998876 8999999999999999999999999999999987 9999999999999999999999999999998763
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=2.6e-86 Score=686.43 Aligned_cols=298 Identities=30% Similarity=0.560 Sum_probs=267.3
Q ss_pred ccCCCCCCCeehhhhhhhhhcCCCCCCCCCCccccccc---cc--Ccc-----CC---CCCcCCccccCcHHHHHHHHHc
Q 046009 61 SKRDFPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFT---HA--GNV-----HD---NGDIASDGYHKYKEDVKLMADT 127 (398)
Q Consensus 61 ~~~~fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~---~~--~~~-----~~---~~~~a~d~y~~y~eDi~l~~~l 127 (398)
++.+||++|+||+||||||+||++++||||+|+||+++ +. +++ .+ ++++||||||||+|||+||++|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 35679999999999999999999999999999999998 31 222 11 4688999999999999999999
Q ss_pred CCCceeecccccccccCCC-CCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHH
Q 046009 128 GLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANV 206 (398)
Q Consensus 128 G~~~~R~sI~Wsri~P~g~-g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~ 206 (398)
|+++|||||+|+||+|+|. +.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||++
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999984 568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCceeEEEccCchhh-----hhccccc-CCC-CCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHh
Q 046009 207 CFREFGDRVSYWTTVNEPNAF-----ALLGYDI-GIA-PPKRCSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKN 279 (398)
Q Consensus 207 ~~~~fgd~V~~w~t~NEP~~~-----~~~gy~~-g~~-~Pg~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~ 279 (398)
||++|||+|++|+|||||++. +..||.. |.+ ||+.. +..+.+|++||+++|||+||+++|++
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~-----------~~~~~~~~~h~~llAHa~A~~~~~~~ 230 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN-----------PEETMYQVLHHQFVASALAVKAARRI 230 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc-----------hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987 6778874 665 44321 12458999999999999999999997
Q ss_pred cCCCCcceEEEEeecCccccCCCCHHHHHHHHHHhhccccccccceecccCCchhHHhhccCC--CCCCHhHHHHh-cCC
Q 046009 280 YQDKQHGYIGMSIFTYGLLPLTNSTEDAIATQRYNDFLVGWIANPLVYGDYPNIMKKNVGSRL--PLFTYLESKQV-KGS 356 (398)
Q Consensus 280 ~~~~~~gkIGi~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~~~l--p~~t~eD~e~i-kgt 356 (398)
.+ ++|||++++..++||.+++|+|++||++++. ...+|+||+++|+||+.|++.++++. |.++++|+++| +++
T Consensus 231 ~~---~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~ 306 (477)
T PRK15014 231 NP---EMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGT 306 (477)
T ss_pred CC---CCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Confidence 54 6899999999999999999999999998773 23359999999999999999998764 78999999999 589
Q ss_pred CcEEEEecccccccccC
Q 046009 357 ADFLGVNNYNSGYIKDN 373 (398)
Q Consensus 357 ~DFiGiNYYts~~V~~~ 373 (398)
+||||||||+|.+|+..
T Consensus 307 ~DFlGiNyYt~~~v~~~ 323 (477)
T PRK15014 307 CDYLGFSYYMTNAVKAE 323 (477)
T ss_pred CCEEEEcceeCeeeccC
Confidence 99999999999999753
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.7e-85 Score=679.42 Aligned_cols=295 Identities=31% Similarity=0.519 Sum_probs=270.6
Q ss_pred CCCCCCeehhhhhhhhhcCCCCCCCCCCccccccccc-CccC------------C----CCCcCCccccCcHHHHHHHHH
Q 046009 64 DFPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFTHA-GNVH------------D----NGDIASDGYHKYKEDVKLMAD 126 (398)
Q Consensus 64 ~fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~-~~~~------------~----~~~~a~d~y~~y~eDi~l~~~ 126 (398)
+||++|+||+||||||+||++++||||+|+||.+++. +++. + ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 4999999999999999999999999999999999874 3321 1 468899999999999999999
Q ss_pred cCCCceeecccccccccCCC-CCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHH
Q 046009 127 TGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYAN 205 (398)
Q Consensus 127 lG~~~~R~sI~Wsri~P~g~-g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~ 205 (398)
||+++|||||+|+||+|+|. +.+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999984 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCceeEEEccCchhhhhcccc-cCC-CCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 046009 206 VCFREFGDRVSYWTTVNEPNAFALLGYD-IGI-APPKRCSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQDK 283 (398)
Q Consensus 206 ~~~~~fgd~V~~w~t~NEP~~~~~~gy~-~g~-~~Pg~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~~ 283 (398)
+|+++|||+|++|+||||||+++..||. .|. +|||... ....+|++||+++|||+||+++|++.+
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~~-- 229 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEVNP-- 229 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHhCC--
Confidence 9999999999999999999999999996 564 4887421 245799999999999999999999754
Q ss_pred CcceEEEEeecCccccCCCCHHHHHHHHHHhhccccccccceecccCCchhHHhhccC--CCCCCHhHHHHhcCCCcEEE
Q 046009 284 QHGYIGMSIFTYGLLPLTNSTEDAIATQRYNDFLVGWIANPLVYGDYPNIMKKNVGSR--LPLFTYLESKQVKGSADFLG 361 (398)
Q Consensus 284 ~~gkIGi~~~~~~~yP~s~~p~D~~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~~~--lp~~t~eD~e~ikgt~DFiG 361 (398)
+++||++++..++||.+++|+|++||++++ +.+.||+||+++|+||+.|++.++++ +|.++++|+++|++++||||
T Consensus 230 -~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlG 307 (474)
T PRK09852 230 -QNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVS 307 (474)
T ss_pred -CCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEE
Confidence 689999999999999999999999999877 45889999999999999999999864 68999999999999999999
Q ss_pred EecccccccccC
Q 046009 362 VNNYNSGYIKDN 373 (398)
Q Consensus 362 iNYYts~~V~~~ 373 (398)
||||++.+|+..
T Consensus 308 iNyYt~~~v~~~ 319 (474)
T PRK09852 308 FSYYASRCASAE 319 (474)
T ss_pred EccccCeecccC
Confidence 999999999753
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=4e-84 Score=663.36 Aligned_cols=293 Identities=45% Similarity=0.859 Sum_probs=276.0
Q ss_pred CCCCCeehhhhhhhhhcCCCCCCCCCCccccccccc-CccCC--CCCcCCccccCcHHHHHHHHHcCCCceeeccccccc
Q 046009 65 FPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFTHA-GNVHD--NGDIASDGYHKYKEDVKLMADTGLDAYRFSISWSRL 141 (398)
Q Consensus 65 fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~-~~~~~--~~~~a~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri 141 (398)
||++|+||+||||+|+||+++++|||+|+||.+++. +++.+ ++++||||||+|+|||++|+++|+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 899999999999999999999999999999999875 44322 778999999999999999999999999999999999
Q ss_pred ccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEc
Q 046009 142 IPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFGDRVSYWTTV 221 (398)
Q Consensus 142 ~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~ 221 (398)
+|+|+|.+|++++++|+++|++|+++||+|+|||+|||+|+||+++ |||.++++++.|++||+.|+++|||+|++|+|+
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9998889999999999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred cCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeecCccccCC
Q 046009 222 NEPNAFALLGYDIGIAPPKRCSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQDKQHGYIGMSIFTYGLLPLT 301 (398)
Q Consensus 222 NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~~~~gkIGi~~~~~~~yP~s 301 (398)
|||++.+..||..|.+||+.++ ....++++||+++|||+||+++|++.+ ++|||++++..++||.+
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~-----------~~~~~~~~hnll~Aha~A~~~~~~~~~---~~~IGi~~~~~~~~P~~ 225 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRD-----------LRAALQAAHHLLLAHGLAVQALRANGP---GAQVGIVLNLTPVYPAS 225 (427)
T ss_pred cCcceecccchhhccCCCCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCCeeeeCC
Confidence 9999999999999999998542 135799999999999999999999764 68999999999999999
Q ss_pred CCHHHHHHHHHHhhccccccccceecccCCchhHHhhccCCCCCCHhHHHHhcCCCcEEEEecccccccccC
Q 046009 302 NSTEDAIATQRYNDFLVGWIANPLVYGDYPNIMKKNVGSRLPLFTYLESKQVKGSADFLGVNNYNSGYIKDN 373 (398)
Q Consensus 302 ~~p~D~~Aa~~~~~~~~~~flDp~~~G~YP~~~~~~l~~~lp~~t~eD~e~ikgt~DFiGiNYYts~~V~~~ 373 (398)
++|+|++||++++++.++||+||++.|+||+.|++.++. +|.+|++|++++++++||||||||++.+|+..
T Consensus 226 ~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~~-~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~ 296 (427)
T TIGR03356 226 DSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLGD-APFVQDGDLETIAQPLDFLGINYYTRSVVAAD 296 (427)
T ss_pred CCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhcc-CCCCCHHHHHHhcCCCCEEEEeccccceeccC
Confidence 999999999999999999999999999999999999974 69999999999999999999999999999864
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.29 E-value=5.9e-12 Score=127.61 Aligned_cols=108 Identities=25% Similarity=0.473 Sum_probs=88.2
Q ss_pred cCcHHHHHHHHHcCCCceee-cccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhh-----
Q 046009 115 HKYKEDVKLMADTGLDAYRF-SISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEY----- 188 (398)
Q Consensus 115 ~~y~eDi~l~~~lG~~~~R~-sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~----- 188 (398)
..+++|+++|+++|+|.+|+ .++|+++||+ +|++| +..+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~-eG~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPE-EGQYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SB-TTB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCC-CCeee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 46899999999999999997 5799999999 79999 56799999999999999999999999999998654
Q ss_pred ----------CC-----CCChhhHHHHHHHHHHHHHHhCCC--ceeEEEccCchh
Q 046009 189 ----------GG-----WINQTIVQDFTAYANVCFREFGDR--VSYWTTVNEPNA 226 (398)
Q Consensus 189 ----------gG-----w~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~~ 226 (398)
|+ ..+|...+...++++.++++|++. |..|.+.|||..
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 11 135667888899999999999985 889999999976
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.26 E-value=1.6e-11 Score=117.65 Aligned_cols=109 Identities=21% Similarity=0.329 Sum_probs=91.0
Q ss_pred CcHHHHHHHHHcCCCceeecccccccc-cCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCC-CC
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLI-PNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGW-IN 193 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~-P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw-~~ 193 (398)
..++|++.|+++|+|++|+.|.|..++ |+..+.++...++.++++|+.+.++||.+++++|+. |.|.... +++ ..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 678999999999999999999998888 454456999999999999999999999999999975 7774332 233 34
Q ss_pred hhhHHHHHHHHHHHHHHhCC--CceeEEEccCchhh
Q 046009 194 QTIVQDFTAYANVCFREFGD--RVSYWTTVNEPNAF 227 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~fgd--~V~~w~t~NEP~~~ 227 (398)
....+.|.++++.++++|++ .|..|.++|||...
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 44678899999999999954 68899999999974
No 16
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.74 E-value=3e-08 Score=95.57 Aligned_cols=82 Identities=20% Similarity=0.388 Sum_probs=71.5
Q ss_pred cccccccCCCCCCChhhhHHHHHHHHHHHHCCCe--EEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCC
Q 046009 137 SWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQ--PHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFGDR 214 (398)
Q Consensus 137 ~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~--p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fgd~ 214 (398)
.|++++|+ +|.+| ++..|.+++.++++||+ ....+.|...|.|+... + .++..+.+.+|++.+++||+++
T Consensus 2 kW~~~ep~-~G~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 2 KWDSTEPS-RGQFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred CcccccCC-CCccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhCCc
Confidence 59999999 79999 55678899999999999 45567788999999642 2 5677899999999999999999
Q ss_pred ceeEEEccCchh
Q 046009 215 VSYWTTVNEPNA 226 (398)
Q Consensus 215 V~~w~t~NEP~~ 226 (398)
|..|.++|||..
T Consensus 74 i~~wdV~NE~~~ 85 (254)
T smart00633 74 IYAWDVVNEALH 85 (254)
T ss_pred ceEEEEeeeccc
Confidence 999999999985
No 17
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=3e-07 Score=99.12 Aligned_cols=117 Identities=19% Similarity=0.338 Sum_probs=91.1
Q ss_pred cCcHHHHHHHHHcCCCceeecc-cccccccCCCCCCChhhhHHHHHH-HHHHHHCCCeEEEEe-cCCCCcHhHHhhh---
Q 046009 115 HKYKEDVKLMADTGLDAYRFSI-SWSRLIPNGRGPVNPKGLQYYNSL-INELISHGIQPHVTL-HHYDLPQALEDEY--- 188 (398)
Q Consensus 115 ~~y~eDi~l~~~lG~~~~R~sI-~Wsri~P~g~g~~n~~~~~~Y~~~-i~~l~~~GI~p~vtL-~H~d~P~~l~~~~--- 188 (398)
..+++|++.||++|+|++|.++ +|++++|+ .|++|.. +.|.. ++.+.+.||..++.. .....|.|+.++|
T Consensus 30 ~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~-eG~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 30 ETWMDDLRKMKALGLNTVRIGYFAWNLHEPE-EGKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHHhCCCeeEeeeEEeeccCcc-ccccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 3478899999999999999955 99999999 7999965 67777 999999999999999 7789999998765
Q ss_pred ------------CCCCChhhH-HHHHHHHHH----HHHH-hCCC--ceeEEEccCchh-hhhcccccC
Q 046009 189 ------------GGWINQTIV-QDFTAYANV----CFRE-FGDR--VSYWTTVNEPNA-FALLGYDIG 235 (398)
Q Consensus 189 ------------gGw~~~~~~-~~F~~ya~~----~~~~-fgd~--V~~w~t~NEP~~-~~~~gy~~g 235 (398)
|+|.+-+.. ..|..|++. +.+| ||+. |.-|.+-||-.. .++..|..+
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~ 173 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQA 173 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHH
Confidence 566433322 246666665 7888 8874 889999998766 344444333
No 18
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=1e-05 Score=83.25 Aligned_cols=109 Identities=20% Similarity=0.234 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCCceeecccccccccCC---CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhh---CCC
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEY---GGW 191 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g---~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~---gGw 191 (398)
++|+..|++.|+|++|+.+.|..+.+.+ +...+...+.+.+++|+..++.||.+++.||+..-+.--.+.- +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999866665542 2223234455999999999999999999999866222111110 122
Q ss_pred C-ChhhHHHHHHHHHHHHHHhCCC--ceeEEEccCchh
Q 046009 192 I-NQTIVQDFTAYANVCFREFGDR--VSYWTTVNEPNA 226 (398)
Q Consensus 192 ~-~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~~ 226 (398)
. ..+.++++.+-.+.++.||++. |--..++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3557799999999999999983 555789999995
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=97.92 E-value=4e-05 Score=80.72 Aligned_cols=106 Identities=25% Similarity=0.494 Sum_probs=64.4
Q ss_pred cHHHHHHHH-HcCCCceeec--c--ccccccc-CCCC--CCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhh-
Q 046009 117 YKEDVKLMA-DTGLDAYRFS--I--SWSRLIP-NGRG--PVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDE- 187 (398)
Q Consensus 117 y~eDi~l~~-~lG~~~~R~s--I--~Wsri~P-~g~g--~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~- 187 (398)
+++.+..++ ++|++.+||- + +..-..+ ++.| .+| +...|.++|.|+++||+|+|.|.. +|.++...
T Consensus 41 ~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~~ 115 (486)
T PF01229_consen 41 WQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASGY 115 (486)
T ss_dssp HHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS-
T ss_pred HHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCCC
Confidence 566666665 9999999984 1 2222222 2223 267 678999999999999999999985 78776432
Q ss_pred -----hCCCC-ChhhHHHHHHHHHHHHHHhCC-----Cce--eEEEccCchhh
Q 046009 188 -----YGGWI-NQTIVQDFTAYANVCFREFGD-----RVS--YWTTVNEPNAF 227 (398)
Q Consensus 188 -----~gGw~-~~~~~~~F~~ya~~~~~~fgd-----~V~--~w~t~NEP~~~ 227 (398)
+.|+. .|+..+.+.++++.+++|+-+ .|. +|++||||++.
T Consensus 116 ~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~ 168 (486)
T PF01229_consen 116 QTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLK 168 (486)
T ss_dssp -EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTST
T ss_pred CccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcc
Confidence 12232 356678888888777666543 455 56899999973
No 20
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=97.81 E-value=0.00054 Score=68.77 Aligned_cols=102 Identities=20% Similarity=0.356 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCC---CcHhHHhhhCCCCC-
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYD---LPQALEDEYGGWIN- 193 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d---~P~~l~~~~gGw~~- 193 (398)
++=+++||+.|+|++|+-+ | +.|...|..| ++.-.++..+.+++||+.+|++|-=| =|.-- .+-..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q-~~P~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQ-NKPAAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB--B--TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCC-CCCccCCCC
Confidence 4458999999999999988 5 4465226555 66888999999999999999998422 23211 11257887
Q ss_pred --hhhHHHHHHHHHHHHHHhCC---CceeEEEccCchh
Q 046009 194 --QTIVQDFTAYANVCFREFGD---RVSYWTTVNEPNA 226 (398)
Q Consensus 194 --~~~~~~F~~ya~~~~~~fgd---~V~~w~t~NEP~~ 226 (398)
.+..+.-.+|.+.+.+.+++ .++.+.+=||.+.
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINN 137 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccc
Confidence 56778888999988877765 5788899999885
No 21
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=97.75 E-value=0.00011 Score=73.41 Aligned_cols=123 Identities=17% Similarity=0.297 Sum_probs=86.5
Q ss_pred CCCCCeehhhhhhhhhcCCCCCCCCCCcccccccccCccCCCCCcCCccccCcHHHHHHHHHcCCCceee--cccccccc
Q 046009 65 FPPGFIFGSGTSAYQVEGAANEDGRAPSIWDTFTHAGNVHDNGDIASDGYHKYKEDVKLMADTGLDAYRF--SISWSRLI 142 (398)
Q Consensus 65 fP~~FlwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~R~--sI~Wsri~ 142 (398)
.+++|.+|+|.++.++++.. . | +.+-.-.+|.+-. ..-|..++
T Consensus 6 ~~~~f~~G~av~~~~~~~~~--------~-----------------------~----~~~~~~~Fn~~t~eN~~Kw~~~e 50 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP--------R-----------------------Y----RELFAKHFNSVTPENEMKWGSIE 50 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH--------H-----------------------H----HHHHHHH-SEEEESSTTSHHHHE
T ss_pred HhccCCEEEEechhHcCCcH--------H-----------------------H----HHHHHHhCCeeeeccccchhhhc
Confidence 45788999999999988631 0 1 1111123444444 47899999
Q ss_pred cCCCCCCChhhhHHHHHHHHHHHHCCCeEE--EEecCCCCcHhHHhhhCCCCChh---hHHHHHHHHHHHHHHhCC--Cc
Q 046009 143 PNGRGPVNPKGLQYYNSLINELISHGIQPH--VTLHHYDLPQALEDEYGGWINQT---IVQDFTAYANVCFREFGD--RV 215 (398)
Q Consensus 143 P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~--vtL~H~d~P~~l~~~~gGw~~~~---~~~~F~~ya~~~~~~fgd--~V 215 (398)
|. +|.+| ++..+++++-++++||++- .-+.|--.|.|+... .-+...+ ..+...+|.+.+++||++ +|
T Consensus 51 ~~-~g~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~~g~i 125 (320)
T PF00331_consen 51 PE-PGRFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKDKGRI 125 (320)
T ss_dssp SB-TTBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTTTTTE
T ss_pred CC-CCccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhccccce
Confidence 99 79999 4568899999999999976 344466889999753 1223222 678899999999999995 89
Q ss_pred eeEEEccCchhh
Q 046009 216 SYWTTVNEPNAF 227 (398)
Q Consensus 216 ~~w~t~NEP~~~ 227 (398)
..|-+.|||...
T Consensus 126 ~~WDVvNE~i~~ 137 (320)
T PF00331_consen 126 YAWDVVNEAIDD 137 (320)
T ss_dssp SEEEEEES-B-T
T ss_pred EEEEEeeecccC
Confidence 999999999753
No 22
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.46 E-value=0.00044 Score=69.13 Aligned_cols=110 Identities=12% Similarity=0.166 Sum_probs=75.8
Q ss_pred cCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec--------CCCCcHhHHh
Q 046009 115 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH--------HYDLPQALED 186 (398)
Q Consensus 115 ~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~--------H~d~P~~l~~ 186 (398)
..|++-++.||++|+|++-+-|.|.--||. +|++|.++..=.+.+|+.++++|+.+++-.- ...+|.||..
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~-~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPE-EGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSB-TTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCC-CCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 347888999999999999999999999999 7999999988899999999999999776643 2359999987
Q ss_pred hhCCC---CChhhHHHHHHHHHHHHHHhCC-------CceeEEEccCch
Q 046009 187 EYGGW---INQTIVQDFTAYANVCFREFGD-------RVSYWTTVNEPN 225 (398)
Q Consensus 187 ~~gGw---~~~~~~~~F~~ya~~~~~~fgd-------~V~~w~t~NEP~ 225 (398)
+.++. .++...+.-.+|.+.+++...+ -|....+=||..
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 64442 2455666666677777666554 355667777755
No 23
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.13 E-value=0.0008 Score=68.68 Aligned_cols=99 Identities=14% Similarity=0.307 Sum_probs=75.5
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec------------CCCCc
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH------------HYDLP 181 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~------------H~d~P 181 (398)
+.-.+.+++.+|++|++.+-+.+=|.-+|+.+++++|+ ..|+++++.+++.|++..+.|. +..||
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 34678899999999999999999999999998999994 5699999999999999888763 35789
Q ss_pred HhHHhh-----------hCC--------CCChhhHHHHHHHHHHHHHHhCCCc
Q 046009 182 QALEDE-----------YGG--------WINQTIVQDFTAYANVCFREFGDRV 215 (398)
Q Consensus 182 ~~l~~~-----------~gG--------w~~~~~~~~F~~ya~~~~~~fgd~V 215 (398)
.|+.++ .|. |....+++.|.+|-+-..++|.+..
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~ 144 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL 144 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH
Confidence 998753 122 3343448999999998888887654
No 24
>PLN02803 beta-amylase
Probab=96.97 E-value=0.0025 Score=66.83 Aligned_cols=106 Identities=19% Similarity=0.326 Sum_probs=80.8
Q ss_pred cCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec-C-----------CCCcH
Q 046009 115 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH-H-----------YDLPQ 182 (398)
Q Consensus 115 ~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~-H-----------~d~P~ 182 (398)
.-.+..++.+|.+|++.+-+.+=|.-+|+++++++|++ .|+++++.+++.|++..+.|. | ..||+
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 183 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWE---GYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPP 183 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 34677999999999999999999999999999999955 699999999999998777765 3 36999
Q ss_pred hHHhhh-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCCceeEEEccCch
Q 046009 183 ALEDEY-----------GGW----------------INQTIVQDFTAYANVCFREFGDRVSYWTTVNEPN 225 (398)
Q Consensus 183 ~l~~~~-----------gGw----------------~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 225 (398)
|+.+.. -|- ..+.-++.|.+|-+-..++|.+... -|+.|..
T Consensus 184 WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~ 251 (548)
T PLN02803 184 WVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQ 251 (548)
T ss_pred HHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 987530 121 2233457788888888777776543 3444443
No 25
>PLN02161 beta-amylase
Probab=96.93 E-value=0.003 Score=65.94 Aligned_cols=110 Identities=17% Similarity=0.276 Sum_probs=83.6
Q ss_pred CccccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec-C-----------C
Q 046009 111 SDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH-H-----------Y 178 (398)
Q Consensus 111 ~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~-H-----------~ 178 (398)
..+....+..++.+|.+|++.+-+.+=|.-+|+++++++|++ .|+++++.+++.|++..+.|. | .
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWS---LYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 455666788999999999999999999999999989999955 699999999999998777765 3 2
Q ss_pred CCcHhHHhh--------h---CCC----------------CChhhHHHHHHHHHHHHHHhCCCceeEEEccCch
Q 046009 179 DLPQALEDE--------Y---GGW----------------INQTIVQDFTAYANVCFREFGDRVSYWTTVNEPN 225 (398)
Q Consensus 179 d~P~~l~~~--------~---gGw----------------~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 225 (398)
.||+|+.+. | .|. ..+.-++.|.+|-+-..++|.+... -|+.|..
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~ 261 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEIS 261 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEE
Confidence 599998752 0 121 2233457888888888888777543 2444443
No 26
>PLN00197 beta-amylase; Provisional
Probab=96.90 E-value=0.0033 Score=66.15 Aligned_cols=106 Identities=20% Similarity=0.324 Sum_probs=81.2
Q ss_pred cCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec-C-----------CCCcH
Q 046009 115 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH-H-----------YDLPQ 182 (398)
Q Consensus 115 ~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~-H-----------~d~P~ 182 (398)
.-.+..++.+|.+|++.+-+.+=|.-+|+++++++|++ .|+++++.+++.|++..+.|. | ..||+
T Consensus 127 ~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWs---gY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~ 203 (573)
T PLN00197 127 KAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWG---GYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPK 203 (573)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 34788899999999999999999999999999999955 699999999999998777765 3 36999
Q ss_pred hHHhhh-----------CCCC----------------ChhhHHHHHHHHHHHHHHhCCCceeEEEccCch
Q 046009 183 ALEDEY-----------GGWI----------------NQTIVQDFTAYANVCFREFGDRVSYWTTVNEPN 225 (398)
Q Consensus 183 ~l~~~~-----------gGw~----------------~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 225 (398)
|+.+.. .|.. .+.-++.|.+|-+-.-++|.+... -|+.|..
T Consensus 204 WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~ 271 (573)
T PLN00197 204 WVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQ 271 (573)
T ss_pred HHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEE
Confidence 987530 1211 223368888888888777776543 2444443
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=96.77 E-value=0.0094 Score=66.14 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=86.5
Q ss_pred CcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec--------CCCCcHhHHhh
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH--------HYDLPQALEDE 187 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~--------H~d~P~~l~~~ 187 (398)
.|++=++.||++|+|++-.=|.|.--||. +|++|.+|..=..++|+.+.+.|+-+++-.- ..++|.||...
T Consensus 60 ~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~-~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~ 138 (840)
T PLN03059 60 MWPDLIQKAKDGGLDVIQTYVFWNGHEPS-PGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYV 138 (840)
T ss_pred HHHHHHHHHHHcCCCeEEEEecccccCCC-CCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcC
Confidence 47777999999999999999999999999 7999999998899999999999998776543 56899999754
Q ss_pred hCCC----CChhhHHHHHHHHHHHHHHhC---------CCceeEEEccCchh
Q 046009 188 YGGW----INQTIVQDFTAYANVCFREFG---------DRVSYWTTVNEPNA 226 (398)
Q Consensus 188 ~gGw----~~~~~~~~F~~ya~~~~~~fg---------d~V~~w~t~NEP~~ 226 (398)
.|- .++...++-.+|.+.+++..+ +-|....+=||-..
T Consensus 139 -~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs 189 (840)
T PLN03059 139 -PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGP 189 (840)
T ss_pred -CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccc
Confidence 442 255666777777777777663 23566677788543
No 28
>PLN02801 beta-amylase
Probab=96.74 E-value=0.0073 Score=63.13 Aligned_cols=98 Identities=19% Similarity=0.335 Sum_probs=77.9
Q ss_pred cCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec-C-----------CCCcH
Q 046009 115 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH-H-----------YDLPQ 182 (398)
Q Consensus 115 ~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~-H-----------~d~P~ 182 (398)
.-.+..++.+|.+|++.+-+.+=|.-+|+++++++|++ .|+++++.+++.|++..+.|. | ..+|+
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWs---gY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP~ 113 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWS---AYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIPQ 113 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 34678899999999999999999999999989999955 699999999999998777665 2 46999
Q ss_pred hHHhhh-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCCc
Q 046009 183 ALEDEY-----------GGW----------------INQTIVQDFTAYANVCFREFGDRV 215 (398)
Q Consensus 183 ~l~~~~-----------gGw----------------~~~~~~~~F~~ya~~~~~~fgd~V 215 (398)
|+.+.. .|- ..+.-++.|.+|-+-..++|.+..
T Consensus 114 WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 114 WVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred HHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 987530 121 223346888888888888887754
No 29
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.11 Score=51.16 Aligned_cols=134 Identities=19% Similarity=0.373 Sum_probs=79.4
Q ss_pred CCCCCCCeehhhhhh-hhhcCCCCCCCCCCcccccccccCccCC-CCCcCCccccCcHHHHHHHHHcCCCceeecccccc
Q 046009 63 RDFPPGFIFGSGTSA-YQVEGAANEDGRAPSIWDTFTHAGNVHD-NGDIASDGYHKYKEDVKLMADTGLDAYRFSISWSR 140 (398)
Q Consensus 63 ~~fP~~FlwG~AtSa-~Q~EG~~~~~gk~~s~WD~~~~~~~~~~-~~~~a~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsr 140 (398)
...|++|+.|+-.|. .|+|-. ++| ..+ ++. -++-++.+|+.|+|.+|+-| |-.
T Consensus 33 ~~~~~dFikGaDis~l~~lE~~---Gvk-------------f~d~ng~--------~qD~~~iLK~~GvNyvRlRv-wnd 87 (403)
T COG3867 33 ENSPNDFIKGADISSLIELENS---GVK-------------FFDTNGV--------RQDALQILKNHGVNYVRLRV-WND 87 (403)
T ss_pred cCChHHhhccccHHHHHHHHHc---Cce-------------EEccCCh--------HHHHHHHHHHcCcCeEEEEE-ecC
Confidence 347999999997765 466631 111 111 221 13347999999999999976 221
Q ss_pred cc-cCC----CCCCChhhhHHHHHHHHHHHHCCCeEEEEec---CCCCcHhHHhhhCCCCCh---hhHHHHHHHHHHHHH
Q 046009 141 LI-PNG----RGPVNPKGLQYYNSLINELISHGIQPHVTLH---HYDLPQALEDEYGGWINQ---TIVQDFTAYANVCFR 209 (398)
Q Consensus 141 i~-P~g----~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~---H~d~P~~l~~~~gGw~~~---~~~~~F~~ya~~~~~ 209 (398)
=- -+| -|.=| ++.--++-.+.+..||+++++.| ||.=|..- ++-..|.+- +.-.+--+|.+.+.+
T Consensus 88 P~dsngn~yggGnnD---~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPkaW~~l~fe~lk~avy~yTk~~l~ 163 (403)
T COG3867 88 PYDSNGNGYGGGNND---LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPKAWENLNFEQLKKAVYSYTKYVLT 163 (403)
T ss_pred CccCCCCccCCCcch---HHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcHHhhhcCHHHHHHHHHHHHHHHHH
Confidence 11 111 12223 45566777899999999999998 45555432 233457542 222334445555554
Q ss_pred Hh---CCCceeEEEccCch
Q 046009 210 EF---GDRVSYWTTVNEPN 225 (398)
Q Consensus 210 ~f---gd~V~~w~t~NEP~ 225 (398)
.+ |=....-.+=||-+
T Consensus 164 ~m~~eGi~pdmVQVGNEtn 182 (403)
T COG3867 164 TMKKEGILPDMVQVGNETN 182 (403)
T ss_pred HHHHcCCCccceEeccccC
Confidence 44 44566667889976
No 30
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.49 E-value=0.023 Score=56.00 Aligned_cols=99 Identities=13% Similarity=0.236 Sum_probs=62.0
Q ss_pred HHHHHHcCCCceeecc--ccccc-c----cC-----C-C-----CCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcH
Q 046009 121 VKLMADTGLDAYRFSI--SWSRL-I----PN-----G-R-----GPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQ 182 (398)
Q Consensus 121 i~l~~~lG~~~~R~sI--~Wsri-~----P~-----g-~-----g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~ 182 (398)
++..++-|+|.+|+.+ .|... . |. . + ..+|++-+++.+++|+.|.+.||++.+.+.| +.|.
T Consensus 36 L~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g~~~ 114 (289)
T PF13204_consen 36 LDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-GCPY 114 (289)
T ss_dssp HHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--HHHH
T ss_pred HHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-CCcc
Confidence 6778899999999988 44433 1 11 0 0 1379999999999999999999999877765 1121
Q ss_pred hHHhhhCCCCC---hhhHHHHHHHHHHHHHHhCCC-ceeEEEccCc
Q 046009 183 ALEDEYGGWIN---QTIVQDFTAYANVCFREFGDR-VSYWTTVNEP 224 (398)
Q Consensus 183 ~l~~~~gGw~~---~~~~~~F~~ya~~~~~~fgd~-V~~w~t~NEP 224 (398)
.+ +.|-. .-..+.-.+|.+.|++||+.. =..|++=||-
T Consensus 115 ---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 115 ---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp ---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred ---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 11 44532 334788899999999999998 4789998886
No 31
>PLN02705 beta-amylase
Probab=96.44 E-value=0.011 Score=62.81 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=76.8
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec-C-----------CCCc
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH-H-----------YDLP 181 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~-H-----------~d~P 181 (398)
-.-.+..++.+|.+|++.+-+.+=|.-+|+++++++|++ .|+++++.+++.|++..+.|. | ..||
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWs---gY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPLP 343 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWS---GYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISLP 343 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccCC
Confidence 345788899999999999999999999999989999955 699999999999999777665 3 3699
Q ss_pred HhHHhhh-----------CCC----------------CChhhHHHHHHHHHHHHHHhCCC
Q 046009 182 QALEDEY-----------GGW----------------INQTIVQDFTAYANVCFREFGDR 214 (398)
Q Consensus 182 ~~l~~~~-----------gGw----------------~~~~~~~~F~~ya~~~~~~fgd~ 214 (398)
+|+.+.- -|. ..+.-++.|.+|.+-.-++|.+.
T Consensus 344 ~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 344 QWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred HHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9987520 121 12334578888888777777664
No 32
>PLN02905 beta-amylase
Probab=96.43 E-value=0.014 Score=62.33 Aligned_cols=100 Identities=14% Similarity=0.248 Sum_probs=78.1
Q ss_pred ccccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec-C-----------CC
Q 046009 112 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH-H-----------YD 179 (398)
Q Consensus 112 d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~-H-----------~d 179 (398)
....-.+..++.+|.+|++.+-+.+=|.-+|+++++++|++ .|+++++.+++.|++..+.|. | ..
T Consensus 283 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWs---gY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IP 359 (702)
T PLN02905 283 ADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWN---GYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIP 359 (702)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcH---HHHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 44556788999999999999999999999999989999955 699999999999998777765 3 36
Q ss_pred CcHhHHhh--------h---CCC----------------CChhhHHHHHHHHHHHHHHhCCC
Q 046009 180 LPQALEDE--------Y---GGW----------------INQTIVQDFTAYANVCFREFGDR 214 (398)
Q Consensus 180 ~P~~l~~~--------~---gGw----------------~~~~~~~~F~~ya~~~~~~fgd~ 214 (398)
||+|+.+. | -|. ..+.-++.|.+|-+-..++|.+.
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99998752 0 121 12344578888887777776654
No 33
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.34 E-value=0.01 Score=60.48 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=48.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhh---CC-----CCChhhHHHHHHHHHHHHHHhCC---C
Q 046009 146 RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEY---GG-----WINQTIVQDFTAYANVCFREFGD---R 214 (398)
Q Consensus 146 ~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~---gG-----w~~~~~~~~F~~ya~~~~~~fgd---~ 214 (398)
+|.+|+.+=+-=+.++++.+++|+.-++ ++-+..|.|+.... |+ =+.++..++|++|-..|+++|.. .
T Consensus 95 dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~ 173 (384)
T PF14587_consen 95 DGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGIN 173 (384)
T ss_dssp TS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--
T ss_pred CCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCc
Confidence 5778775444455689999999999877 44567777764321 11 14677899999999999999933 5
Q ss_pred ceeEEEccCchh
Q 046009 215 VSYWTTVNEPNA 226 (398)
Q Consensus 215 V~~w~t~NEP~~ 226 (398)
+++-.++|||+.
T Consensus 174 f~~IsP~NEP~~ 185 (384)
T PF14587_consen 174 FDYISPFNEPQW 185 (384)
T ss_dssp EEEEE--S-TTS
T ss_pred cceeCCcCCCCC
Confidence 899999999994
No 34
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.31 E-value=0.01 Score=58.97 Aligned_cols=86 Identities=19% Similarity=0.337 Sum_probs=70.3
Q ss_pred cccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEE--ecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 046009 135 SISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVT--LHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 135 sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vt--L~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fg 212 (398)
-.-|.-|+|+ +|.+|.++ =|.+.+-++++||..--- +.|--.|.|+.. .-+..+...+...++...|+.||+
T Consensus 66 emKwe~i~p~-~G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rYk 139 (345)
T COG3693 66 EMKWEAIEPE-RGRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRYK 139 (345)
T ss_pred ccccccccCC-CCccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhcc
Confidence 4578999998 79999654 568889999999975421 335577999852 237778899999999999999999
Q ss_pred CCceeEEEccCchh
Q 046009 213 DRVSYWTTVNEPNA 226 (398)
Q Consensus 213 d~V~~w~t~NEP~~ 226 (398)
+.|..|-+.|||--
T Consensus 140 g~~~sWDVVNE~vd 153 (345)
T COG3693 140 GSVASWDVVNEAVD 153 (345)
T ss_pred CceeEEEecccccC
Confidence 99999999999965
No 35
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=95.84 E-value=0.042 Score=53.92 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=62.1
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhC----
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYG---- 189 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~g---- 189 (398)
...++.|+++||++|+|++|++- .|. + .++++.|-+.||-++.-+.....-.|- ..+
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~-----~-------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~~~ 95 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPP-----S-------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNCNY 95 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S-------S-------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCTSC
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccC-----c-------HHHHHHHhhcCCEEEEeccccccCccc--cCCcccc
Confidence 46789999999999999999843 122 1 245677888999998776432211111 001
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCCC--ceeEEEccCc
Q 046009 190 GWINQTIVQDFTAYANVCFREFGDR--VSYWTTVNEP 224 (398)
Q Consensus 190 Gw~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP 224 (398)
--.+++..+.+.+-++.+++++.++ |-.|.+.||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 96 DADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0136778888889999999999985 8999999999
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=94.84 E-value=0.15 Score=46.23 Aligned_cols=103 Identities=16% Similarity=0.311 Sum_probs=66.2
Q ss_pred cCcHHHHHHHHHcCCCceeecccccccc-----cCC--CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhh
Q 046009 115 HKYKEDVKLMADTGLDAYRFSISWSRLI-----PNG--RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDE 187 (398)
Q Consensus 115 ~~y~eDi~l~~~lG~~~~R~sI~Wsri~-----P~g--~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~ 187 (398)
.+|+++++.|+++|++.+=+. |+... |.. ++.+.....+.++.+++++.++||++++.|+. -|.|..+.
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~~ 95 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQG 95 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhcc
Confidence 358999999999999987543 44432 220 11222234578999999999999999999984 34555421
Q ss_pred hCCCCChhhHHHHHHHHHHHHHHhCCC--ceeEEEccCch
Q 046009 188 YGGWINQTIVQDFTAYANVCFREFGDR--VSYWTTVNEPN 225 (398)
Q Consensus 188 ~gGw~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~ 225 (398)
-..| -++.=..-++.+.++||.+ +.-|-+=.|+.
T Consensus 96 ~~~~----~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 96 DLDW----EAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred CHHH----HHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 0012 2333345677888888874 45555555544
No 37
>PRK10150 beta-D-glucuronidase; Provisional
Probab=94.45 E-value=0.14 Score=55.56 Aligned_cols=93 Identities=19% Similarity=0.194 Sum_probs=65.0
Q ss_pred CcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHh-------hh
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALED-------EY 188 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~-------~~ 188 (398)
.+..|+++||++|+|++|++- .|. ++ ++++.|=+.||-++.-+.-+....|... ..
T Consensus 314 ~~~~d~~l~K~~G~N~vR~sh-----~p~-----~~-------~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~ 376 (604)
T PRK10150 314 LNVHDHNLMKWIGANSFRTSH-----YPY-----SE-------EMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPK 376 (604)
T ss_pred HHHHHHHHHHHCCCCEEEecc-----CCC-----CH-------HHHHHHHhcCcEEEEeccccccccccccccccccccc
Confidence 478899999999999999952 232 12 5667888899988866543322222210 00
Q ss_pred CCCC----ChhhHHHHHHHHHHHHHHhCCC--ceeEEEccCch
Q 046009 189 GGWI----NQTIVQDFTAYANVCFREFGDR--VSYWTTVNEPN 225 (398)
Q Consensus 189 gGw~----~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~ 225 (398)
..|. +++..+.+.+-++.++++.+++ |-.|.+-||+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 377 ETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 1222 3567788889999999999986 78999999973
No 38
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.42 E-value=0.16 Score=54.86 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=86.1
Q ss_pred cCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEe--------cCCCCcHhHHh
Q 046009 115 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTL--------HHYDLPQALED 186 (398)
Q Consensus 115 ~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL--------~H~d~P~~l~~ 186 (398)
..|++=|+.+|++|+|++..=+-|.-.||. +|++|.+|.-=..++|..++++|+-+++-+ .|-.+|.||..
T Consensus 49 e~W~~~i~k~k~~Gln~IqtYVfWn~Hep~-~g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 49 EMWPDLIKKAKAGGLNVIQTYVFWNLHEPS-PGKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhhHHHHHHHHhcCCceeeeeeecccccCC-CCcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 347777999999999999999999999999 799999997777789999999998766543 36788988876
Q ss_pred hhCCC----CChhhHHHHHHHHHHHHHHhC-------CCceeEEEccCch
Q 046009 187 EYGGW----INQTIVQDFTAYANVCFREFG-------DRVSYWTTVNEPN 225 (398)
Q Consensus 187 ~~gGw----~~~~~~~~F~~ya~~~~~~fg-------d~V~~w~t~NEP~ 225 (398)
. .|- .|+.+-....+|.+.++...+ .=|..-.+=||-.
T Consensus 128 ~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 128 V-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred C-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 5 342 377788888999988877433 2355556777765
No 39
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=90.29 E-value=2 Score=42.75 Aligned_cols=87 Identities=20% Similarity=0.357 Sum_probs=61.8
Q ss_pred ccCcHHHHHHHHHcCCCceeecc---cccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCC
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSI---SWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGG 190 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI---~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gG 190 (398)
..||++=-+++++.|+|.+-+.= .-..|- .+-++.+.++-+.++.+||++.+++. |.-|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt--------~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLT--------PEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGS--------TTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcC--------HHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 46788888999999999886532 222222 23477788999999999999999997 7778654 56
Q ss_pred C-----CChhhHHHHHHHHHHHHHHhCC
Q 046009 191 W-----INQTIVQDFTAYANVCFREFGD 213 (398)
Q Consensus 191 w-----~~~~~~~~F~~ya~~~~~~fgd 213 (398)
. ++++++.++.+=++.+.++.-|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3 6889999999999999998765
No 40
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=90.08 E-value=1.2 Score=51.53 Aligned_cols=93 Identities=14% Similarity=0.096 Sum_probs=62.7
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCC
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWIN 193 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~ 193 (398)
...+++|+++||++|+|++|++ -.|. ++ ++.+.|=+.||-++--..-.....+-... ...+
T Consensus 370 ~e~~~~di~lmK~~g~NaVR~s-----HyP~-----~p-------~fydlcDe~GilV~dE~~~e~hg~~~~~~--~~~d 430 (1027)
T PRK09525 370 EETMVQDILLMKQHNFNAVRCS-----HYPN-----HP-------LWYELCDRYGLYVVDEANIETHGMVPMNR--LSDD 430 (1027)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCC-----CH-------HHHHHHHHcCCEEEEecCccccCCccccC--CCCC
Confidence 4567999999999999999995 2333 11 34567778999887664210101000000 1124
Q ss_pred hhhHHHHHHHHHHHHHHhCCC--ceeEEEccCch
Q 046009 194 QTIVQDFTAYANVCFREFGDR--VSYWTTVNEPN 225 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~ 225 (398)
++..+.+.+=++.+++|.+++ |..|..-||+.
T Consensus 431 p~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 431 PRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 566677777788999999986 88999999974
No 41
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=88.25 E-value=1.9 Score=49.90 Aligned_cols=90 Identities=12% Similarity=0.171 Sum_probs=62.1
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec----CCCCcHhHHhhhC
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH----HYDLPQALEDEYG 189 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~----H~d~P~~l~~~~g 189 (398)
...+++|+++||++|+|++|++. .|.. + .+.+.|=+.||-++--.. .|..... +
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~sH-----yP~~-----~-------~fydlcDe~GllV~dE~~~e~~g~~~~~~----~- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTAH-----YPND-----P-------RFYELCDIYGLFVMAETDVESHGFANVGD----I- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEecC-----CCCC-----H-------HHHHHHHHCCCEEEECCcccccCcccccc----c-
Confidence 46789999999999999999962 3441 1 456777889998776531 1111100 0
Q ss_pred CC--CChhhHHHHHHHHHHHHHHhCCC--ceeEEEccCch
Q 046009 190 GW--INQTIVQDFTAYANVCFREFGDR--VSYWTTVNEPN 225 (398)
Q Consensus 190 Gw--~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~ 225 (398)
.| ..+...+.|.+=++.+++|.+++ |-.|..-||..
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 12 23445567777788999999986 88999999973
No 42
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=87.10 E-value=3.6 Score=46.32 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=64.6
Q ss_pred ccccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCC
Q 046009 112 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGW 191 (398)
Q Consensus 112 d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw 191 (398)
-.+..+++|+++||++|+|++|.| =.|+ .+ ++.+.|=+.||-++=...+.. +++.
T Consensus 318 ~~~~~~~~dl~lmk~~n~N~vRts-----HyP~------~~------~~ydLcDelGllV~~Ea~~~~--------~~~~ 372 (808)
T COG3250 318 TDEDAMERDLKLMKEANMNSVRTS-----HYPN------SE------EFYDLCDELGLLVIDEAMIET--------HGMP 372 (808)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEec-----CCCC------CH------HHHHHHHHhCcEEEEecchhh--------cCCC
Confidence 345559999999999999999998 3344 11 455667778998886554311 2444
Q ss_pred CChhhHHHHHHHHHHHHHHhCCC--ceeEEEccCch
Q 046009 192 INQTIVQDFTAYANVCFREFGDR--VSYWTTVNEPN 225 (398)
Q Consensus 192 ~~~~~~~~F~~ya~~~~~~fgd~--V~~w~t~NEP~ 225 (398)
..++..+...+=++.+++|-+++ |..|..=||.+
T Consensus 373 ~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 373 DDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 55666666777788889998875 89999999965
No 43
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=86.93 E-value=0.97 Score=46.48 Aligned_cols=100 Identities=17% Similarity=0.262 Sum_probs=72.2
Q ss_pred HHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCC--ChhhHHHHH
Q 046009 124 MADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWI--NQTIVQDFT 201 (398)
Q Consensus 124 ~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~--~~~~~~~F~ 201 (398)
-+|+|++-+|.---|.-++.. --++ ..++++++|.+...|+.-+.+-.||+.+.-....|.+=. .....+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 458899999988888833322 2344 568999999999999655556667777655444333322 234789999
Q ss_pred HHHHHHHHHhCCC-ceeE--EEccCchhhh
Q 046009 202 AYANVCFREFGDR-VSYW--TTVNEPNAFA 228 (398)
Q Consensus 202 ~ya~~~~~~fgd~-V~~w--~t~NEP~~~~ 228 (398)
.+++-|+.++|-+ |.-| ..+||||..+
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~a 118 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLLA 118 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCccc
Confidence 9999999999953 5555 7999999874
No 44
>smart00642 Aamy Alpha-amylase domain.
Probab=83.90 E-value=2.8 Score=37.91 Aligned_cols=63 Identities=14% Similarity=0.263 Sum_probs=43.7
Q ss_pred ccCcHHHHHHHHHcCCCceeeccccccccc---------CCCCCCCh--hhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIP---------NGRGPVNP--KGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P---------~g~g~~n~--~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
+....+-++.++++|++++-++--+..... ..--.+|+ ...+-++++|++++++||++++++-
T Consensus 18 ~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 18 LQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 344566678999999999988765544421 10011222 2356789999999999999999874
No 45
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=77.93 E-value=12 Score=37.32 Aligned_cols=95 Identities=18% Similarity=0.432 Sum_probs=64.0
Q ss_pred CcHHHHHHHHHcCCCceeecc-------------cccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEe----c--
Q 046009 116 KYKEDVKLMADTGLDAYRFSI-------------SWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTL----H-- 176 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI-------------~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL----~-- 176 (398)
..++-++.++++|+|++=+.+ .|++..+...| .+ .|.+.+..+|++++++||+...-+ .
T Consensus 20 ~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~-~~-pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~ 97 (311)
T PF02638_consen 20 QIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQG-KD-PGFDPLEFMIEEAHKRGLEVHAWFRVGFNAP 97 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCC-CC-CCccHHHHHHHHHHHcCCEEEEEEEeecCCC
Confidence 356778999999999876544 34444322111 12 257789999999999999987544 1
Q ss_pred ---C--CCCcHhHHhh-------h----CC--CC---ChhhHHHHHHHHHHHHHHhC
Q 046009 177 ---H--YDLPQALEDE-------Y----GG--WI---NQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 177 ---H--~d~P~~l~~~-------~----gG--w~---~~~~~~~F~~ya~~~~~~fg 212 (398)
| -..|.|+..+ + ++ |+ +|++.+...+-++.++++|.
T Consensus 98 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 98 DVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred chhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1 1246665411 1 22 44 57899999999999999996
No 46
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=77.85 E-value=6.3 Score=39.41 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecC
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHH 177 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H 177 (398)
-.+.|+.+|++||+|++|+=- |-|+ .| .++-.+.|.++||-.+++|..
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY~----vdp~----~n------Hd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVYS----VDPS----KN------HDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT----S--------HHHHHHHHHTT-EEEEES-B
T ss_pred HHHHhHHHHHHcCCCEEEEEE----eCCC----CC------HHHHHHHHHhCCCEEEEecCC
Confidence 578999999999999999732 3344 12 567778899999999999974
No 47
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=74.91 E-value=23 Score=35.89 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=65.7
Q ss_pred CCcCCccccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHh
Q 046009 107 GDIASDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALED 186 (398)
Q Consensus 107 ~~~a~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~ 186 (398)
+-+|.=||+ |+.-+..++. |++.+|+. ||.+-. -+..+++++.++++|+-.=+..+|-.++.-+.+
T Consensus 74 PlVADIHFd-~~lAl~a~~~-g~dkiRIN----------PGNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~ 139 (346)
T TIGR00612 74 PLVADIHFD-YRLAALAMAK-GVAKVRIN----------PGNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLLE 139 (346)
T ss_pred CEEEeeCCC-cHHHHHHHHh-ccCeEEEC----------CCCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHH
Confidence 334555665 6666655554 99999852 444432 357899999999999999999999999999999
Q ss_pred hhCCCCChhhHHHHHHHHHHHHH
Q 046009 187 EYGGWINQTIVQDFTAYANVCFR 209 (398)
Q Consensus 187 ~~gGw~~~~~~~~F~~ya~~~~~ 209 (398)
+||+-+.+..++.-.++++.+-+
T Consensus 140 kyg~~t~eamveSAl~~v~~le~ 162 (346)
T TIGR00612 140 KYGDATAEAMVQSALEEAAILEK 162 (346)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHH
Confidence 98765556677777777776533
No 48
>PLN02361 alpha-amylase
Probab=74.20 E-value=6.1 Score=40.95 Aligned_cols=64 Identities=17% Similarity=0.298 Sum_probs=46.1
Q ss_pred ccccCcHHHHHHHHHcCCCceeecccccccccCCCCC-----CChh--hhHHHHHHHHHHHHCCCeEEEEe
Q 046009 112 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNPK--GLQYYNSLINELISHGIQPHVTL 175 (398)
Q Consensus 112 d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~-----~n~~--~~~~Y~~~i~~l~~~GI~p~vtL 175 (398)
.+|....+-++.+++||++++=++-.....-+.|-.. +|+. ..+-++++|++|+++||++++.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 3788889999999999999998876544333332111 2221 24468899999999999999874
No 49
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=73.71 E-value=6.4 Score=37.48 Aligned_cols=57 Identities=23% Similarity=0.492 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCceeecccccccccCC-CC-------CCCh--hhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNG-RG-------PVNP--KGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g-~g-------~~n~--~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
.+-++.+++||++++-++--+.. |.+ .| .+|+ ...+=++++|++++++||++|+++-
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~~--~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFES--PNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EES--SSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceeccccccc--ccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 45588999999999998765442 111 11 1232 2466789999999999999999974
No 50
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=73.45 E-value=14 Score=39.73 Aligned_cols=92 Identities=18% Similarity=0.318 Sum_probs=59.7
Q ss_pred ccCcHHHHHHHHHcCCCceeeccc--------cc-------ccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec--
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSIS--------WS-------RLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH-- 176 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~--------Ws-------ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~-- 176 (398)
+.-..+-++.+++||++++-+.-- |. .+.|. -| ..+-++++|++++++||++++++-
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~-~G-----~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNA-YG-----GPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccc-cC-----CHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 445566789999999999876431 21 11111 12 345688999999999999999853
Q ss_pred CCCC---------cHhHHhh-hCCC------CCh---hhHHHHHHHHHHHHHHhC
Q 046009 177 HYDL---------PQALEDE-YGGW------INQ---TIVQDFTAYANVCFREFG 212 (398)
Q Consensus 177 H~d~---------P~~l~~~-~gGw------~~~---~~~~~F~~ya~~~~~~fg 212 (398)
|... | |+... ..+| .++ ++.+.+.+-++.-+++||
T Consensus 184 H~~~~~~~~~~~~~-y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~ 237 (542)
T TIGR02402 184 HFGPEGNYLPRYAP-YFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH 237 (542)
T ss_pred CCCCccccccccCc-cccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC
Confidence 5431 2 22211 1233 245 777888888888888876
No 51
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=71.86 E-value=1.8 Score=45.44 Aligned_cols=109 Identities=16% Similarity=0.106 Sum_probs=76.8
Q ss_pred cHHHHHHHHHcCCCceeecccc-cccccCCCCCCChhh-hHHHHHHHHHHHHCCCeEEEEec----CCCCcHhHHhhhCC
Q 046009 117 YKEDVKLMADTGLDAYRFSISW-SRLIPNGRGPVNPKG-LQYYNSLINELISHGIQPHVTLH----HYDLPQALEDEYGG 190 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~W-sri~P~g~g~~n~~~-~~~Y~~~i~~l~~~GI~p~vtL~----H~d~P~~l~~~~gG 190 (398)
.+.|++.++.+|++..|++|-= ..+ -+..|..|.+. +.+.+.+++.+...+|+.++||. |+.--.|-..=.||
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc-~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~ 106 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDC-RDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE 106 (587)
T ss_pred hhcccccccCccceeEEEEEecCcch-hhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCC
Confidence 4578899999999999999521 111 12246777765 88999999999999999999986 22211111000011
Q ss_pred ------CCChhhHHHHHHHHHHHHHHhCC--CceeEEEccCchh
Q 046009 191 ------WINQTIVQDFTAYANVCFREFGD--RVSYWTTVNEPNA 226 (398)
Q Consensus 191 ------w~~~~~~~~F~~ya~~~~~~fgd--~V~~w~t~NEP~~ 226 (398)
...+.....|.+|++-+++.|+. .+--|..-|||-+
T Consensus 107 ~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 107 QSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 12455778899999999998886 4788999999765
No 52
>PLN00196 alpha-amylase; Provisional
Probab=70.72 E-value=7.1 Score=40.78 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=43.3
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCCCC-----CCCh---hhhHHHHHHHHHHHHCCCeEEEEe
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG-----PVNP---KGLQYYNSLINELISHGIQPHVTL 175 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g-----~~n~---~~~~~Y~~~i~~l~~~GI~p~vtL 175 (398)
|....+.++.+++||++++=++-.....-+.|=. .+|+ ..-+=++++|++++++||++|++.
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4456788999999999999887655433222211 1221 123458999999999999999984
No 53
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=70.55 E-value=15 Score=36.68 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCC-ceeecc-ccc-cccc-C-CCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCC
Q 046009 118 KEDVKLMADTGLD-AYRFSI-SWS-RLIP-N-GRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWI 192 (398)
Q Consensus 118 ~eDi~l~~~lG~~-~~R~sI-~Ws-ri~P-~-g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~ 192 (398)
+|.+++|+++|++ .+=+++ +-+ ++.- . ++| .+ .+-+.+.++.++++||.+.+.+. +++| +..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P--------~~s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-ST---FEDFIRAAELARKYGAGVKAYLL-FKPP--------FLS 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCC--------CCC
Confidence 7889999999987 455555 221 2221 1 122 23 45688999999999999777664 3444 122
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhhhhcccccCCCCC
Q 046009 193 NQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAFALLGYDIGIAPP 239 (398)
Q Consensus 193 ~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~g~~~P 239 (398)
-.++++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.+.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 33677888888887765 45888888777677765545566676654
No 54
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=69.56 E-value=18 Score=35.53 Aligned_cols=118 Identities=13% Similarity=0.144 Sum_probs=71.6
Q ss_pred cccccccccCccCCCCCcCCccccCcHHHHHHHHHcCCCceeecccccccccCCC-CCCChhhhHHHHHHHHHHHHCCCe
Q 046009 92 SIWDTFTHAGNVHDNGDIASDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNSLINELISHGIQ 170 (398)
Q Consensus 92 s~WD~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~-g~~n~~~~~~Y~~~i~~l~~~GI~ 170 (398)
+.|+-|..... ...+..+.-.+..+++=|+..+++|+..+=+.-.|+.-.++.. +......-....++++..+++|+.
T Consensus 10 ~~W~Ww~~~~~-~~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVg 88 (273)
T PF10566_consen 10 AAWSWWSMHNG-KGVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVG 88 (273)
T ss_dssp EEECTCCCCTT-SSBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-E
T ss_pred EEEeecccCCC-CCCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 56665543211 1122234456788999999999999999999999997332211 111111123477999999999999
Q ss_pred EEEEecCCC------CcHhHHh---hh------------CCCCChhhHHHHHHHHHHHHHH
Q 046009 171 PHVTLHHYD------LPQALED---EY------------GGWINQTIVQDFTAYANVCFRE 210 (398)
Q Consensus 171 p~vtL~H~d------~P~~l~~---~~------------gGw~~~~~~~~F~~ya~~~~~~ 210 (398)
+++-.+|-+ +=..+.+ .| -+-.+.+.++.+.+-++.++++
T Consensus 89 i~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 89 IWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp EEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 999999866 2111211 11 1224666888888888888875
No 55
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=69.43 E-value=29 Score=34.20 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=66.9
Q ss_pred cHHHHHHHHHcC--CCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCC---CCcHhHHhh----
Q 046009 117 YKEDVKLMADTG--LDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHY---DLPQALEDE---- 187 (398)
Q Consensus 117 y~eDi~l~~~lG--~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~---d~P~~l~~~---- 187 (398)
.++-++.+++.| ++++=+.+.|.+-...+.=.+|++.+--.+++|++|++.|+++++.++-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~ 105 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGY 105 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCe
Confidence 456788888999 45566777887532111234565555567899999999999988877633 223211110
Q ss_pred ---------h--------CC---CCChhhHHHHHHHHHHHHHHhCCCce-eEEEccCc
Q 046009 188 ---------Y--------GG---WINQTIVQDFTAYANVCFREFGDRVS-YWTTVNEP 224 (398)
Q Consensus 188 ---------~--------gG---w~~~~~~~~F~~ya~~~~~~fgd~V~-~w~t~NEP 224 (398)
+ ++ ++||++.+.|.+..+.+.+ .| |+ +|.=+|||
T Consensus 106 ~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 106 LVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred EEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 0 11 5788989888887776554 33 44 45668887
No 56
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=69.42 E-value=19 Score=31.38 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCceeecc------cc--cccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecC
Q 046009 119 EDVKLMADTGLDAYRFSI------SW--SRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHH 177 (398)
Q Consensus 119 eDi~l~~~lG~~~~R~sI------~W--sri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H 177 (398)
+=++.++++|+|++-+.. +| +++.+. ....+ -+.+.++|++++++||++++=+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~---hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPR---HPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcC---CCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 346889999999999833 22 333322 12223 578999999999999999987754
No 57
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.95 E-value=29 Score=34.29 Aligned_cols=106 Identities=17% Similarity=0.246 Sum_probs=71.4
Q ss_pred cHHHHHHHHHcCC--CceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCC---cHhHH------
Q 046009 117 YKEDVKLMADTGL--DAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDL---PQALE------ 185 (398)
Q Consensus 117 y~eDi~l~~~lG~--~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~---P~~l~------ 185 (398)
..+-++.+++.|+ +++=+.+.|..-. |.=.+|.+.+.-..+++++|++.|+++++.+.=+-. +..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 3555778888885 4666777785421 233556655666789999999999999887763211 11111
Q ss_pred ---hhhC----------C------CCChhhHHHHHHHHHHHHHHhCCCceeEEEccCch
Q 046009 186 ---DEYG----------G------WINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPN 225 (398)
Q Consensus 186 ---~~~g----------G------w~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 225 (398)
+..| | ++||++.+.|.+..+.+....|= --+|+=+|||.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 1 57999999999999888877753 34568899997
No 58
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=67.14 E-value=34 Score=34.48 Aligned_cols=80 Identities=13% Similarity=0.202 Sum_probs=48.1
Q ss_pred CChhhhHHHHHHHHHHHHCCCeEEEEecCC-CCcHhHHh--hhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCch
Q 046009 149 VNPKGLQYYNSLINELISHGIQPHVTLHHY-DLPQALED--EYGGWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPN 225 (398)
Q Consensus 149 ~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~-d~P~~l~~--~~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 225 (398)
+|++.+.--++++++|++.|++.++.++-+ ..-..+.. .+-.|+||++.+.|.+..+.+.+ .| -.-+|+=+|||.
T Consensus 58 ~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~ 135 (332)
T cd06601 58 TNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPA 135 (332)
T ss_pred ecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCcc
Confidence 333333334689999999999988766421 10000000 01236789988887776554433 23 234889999999
Q ss_pred hhhhc
Q 046009 226 AFALL 230 (398)
Q Consensus 226 ~~~~~ 230 (398)
++...
T Consensus 136 ~~~~~ 140 (332)
T cd06601 136 IMPSY 140 (332)
T ss_pred cccCC
Confidence 87543
No 59
>PRK12313 glycogen branching enzyme; Provisional
Probab=67.07 E-value=25 Score=38.55 Aligned_cols=93 Identities=15% Similarity=0.310 Sum_probs=60.1
Q ss_pred ccCcHHH-HHHHHHcCCCceeeccc--------cc-------ccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEe--
Q 046009 114 YHKYKED-VKLMADTGLDAYRFSIS--------WS-------RLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTL-- 175 (398)
Q Consensus 114 y~~y~eD-i~l~~~lG~~~~R~sI~--------Ws-------ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL-- 175 (398)
|.-..+. ++.+++||++++=+.=- |. .|.|. -| ..+=++++|++++++||++|+++
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~-~G-----t~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSR-YG-----TPEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCC-CC-----CHHHHHHHHHHHHHCCCEEEEEECC
Confidence 4444556 49999999999876432 21 12222 12 24458899999999999999994
Q ss_pred cCCCCcH----hHH--------h---h-hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 046009 176 HHYDLPQ----ALE--------D---E-YGGW-------INQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 176 ~H~d~P~----~l~--------~---~-~gGw-------~~~~~~~~F~~ya~~~~~~fg 212 (398)
.|..-.. ++. + . +.+| .++++.+.+.+-++.-+++||
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4653211 110 0 0 0123 368888899998888888887
No 60
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.94 E-value=1.4e+02 Score=29.80 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=82.9
Q ss_pred ccccc---CCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCC---cHhH---------Hhh--h-CCCC--------
Q 046009 139 SRLIP---NGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDL---PQAL---------EDE--Y-GGWI-------- 192 (398)
Q Consensus 139 sri~P---~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~---P~~l---------~~~--~-gGw~-------- 192 (398)
++..| ...+-+|.+-+..++++.+.++++|-+.++=|.|-+- +.+. ... . ..+.
T Consensus 63 ~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~ 142 (338)
T cd04733 63 HLEEPGIIGNVVLESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEE 142 (338)
T ss_pred cccCCCcCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHH
Confidence 45555 3356778889999999999999999999999999332 1000 000 0 0011
Q ss_pred -ChhhHHHHHHHHHHHHHHhC-CCceeEEEccCchhhhhcccccCCCC-CC--CCCCCCCCCCCCCCCChhHHHHHHHHH
Q 046009 193 -NQTIVQDFTAYANVCFREFG-DRVSYWTTVNEPNAFALLGYDIGIAP-PK--RCSPPFKNCRKGNSSTEPYMAVHHVLL 267 (398)
Q Consensus 193 -~~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEP~~~~~~gy~~g~~~-Pg--~~~~~~~~~~~~~s~~~~~~a~hnlll 267 (398)
-+++++.|++=|+.+ ++.| |-| .+.+-.||+...|. |. .+.+. .|.| +-|-..
T Consensus 143 eI~~~i~~~~~aA~ra-~~aGfDgV---------eih~a~gyLl~qFlsp~~N~R~D~-----yGGs-------lenR~r 200 (338)
T cd04733 143 EIEDVIDRFAHAARLA-QEAGFDGV---------QIHAAHGYLLSQFLSPLTNKRTDE-----YGGS-------LENRAR 200 (338)
T ss_pred HHHHHHHHHHHHHHHH-HHcCCCEE---------EEchhhhhHHHHhcCCcCCCCCcc-----CCCC-------HHHHHH
Confidence 123567777655544 4444 223 23456688877653 43 11111 1211 234444
Q ss_pred HHHHHHHHHHHhcCCCCcceEEEEeecCccccCCCCHHHH-HHHHHH
Q 046009 268 AHASVARLYRKNYQDKQHGYIGMSIFTYGLLPLTNSTEDA-IATQRY 313 (398)
Q Consensus 268 AHA~Av~~~r~~~~~~~~gkIGi~~~~~~~yP~s~~p~D~-~Aa~~~ 313 (398)
--...++.+|+..+. +-.|++-++...+.+..-++++. ..++..
T Consensus 201 f~~EiI~aIR~avG~--d~~v~vris~~~~~~~g~~~eea~~ia~~L 245 (338)
T cd04733 201 LLLEIYDAIRAAVGP--GFPVGIKLNSADFQRGGFTEEDALEVVEAL 245 (338)
T ss_pred HHHHHHHHHHHHcCC--CCeEEEEEcHHHcCCCCCCHHHHHHHHHHH
Confidence 445677777776431 34688877754444433345543 344443
No 61
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.07 E-value=16 Score=38.64 Aligned_cols=112 Identities=20% Similarity=0.437 Sum_probs=71.8
Q ss_pred ccCcHHHHHHHHHcCCCceeec----ccccccccC-----------------------C-----CCCCChh----hhHHH
Q 046009 114 YHKYKEDVKLMADTGLDAYRFS----ISWSRLIPN-----------------------G-----RGPVNPK----GLQYY 157 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~s----I~Wsri~P~-----------------------g-----~g~~n~~----~~~~Y 157 (398)
|.+|+..|+-|+-.|+|..=.- +-|.+|+-. | .|...++ .+-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6789999999999999965321 123333222 1 1333222 12233
Q ss_pred HHHHHHHHHCCCeEEEEecCCCCcHhHHhhh--------CCCC---------------ChhhHHHHHHHHHHHHHHhCCC
Q 046009 158 NSLINELISHGIQPHVTLHHYDLPQALEDEY--------GGWI---------------NQTIVQDFTAYANVCFREFGDR 214 (398)
Q Consensus 158 ~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~--------gGw~---------------~~~~~~~F~~ya~~~~~~fgd~ 214 (398)
+++|+++++-||.|++--+---.|..|..-+ +-|. .|-+.+-=..|-+...++||+-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 5899999999999999888778898887543 2232 2234455556677888999963
Q ss_pred ceeE--EEccCch
Q 046009 215 VSYW--TTVNEPN 225 (398)
Q Consensus 215 V~~w--~t~NEP~ 225 (398)
-..+ -||||..
T Consensus 237 tniy~~DpFNE~~ 249 (666)
T KOG2233|consen 237 TNIYSADPFNEIL 249 (666)
T ss_pred ccccccCcccccC
Confidence 2222 4899853
No 62
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=65.76 E-value=23 Score=37.53 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=62.3
Q ss_pred cccCcHHH-----HHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHh----
Q 046009 113 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQA---- 183 (398)
Q Consensus 113 ~y~~y~eD-----i~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~---- 183 (398)
.|..|.+| ++...+.|++.+|+.++-+.+ +-....++..++.|++...++.+-.-|..
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~ 154 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEY 154 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHH
Confidence 57778888 899999999999998865542 23556678888888877777765333411
Q ss_pred HHhh----------------hCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 184 LEDE----------------YGGWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 184 l~~~----------------~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
+.+. -.|-..|. ...+.++.+-++++ ..-...+.|-..+.
T Consensus 155 ~~~~a~~l~~~Gad~I~i~Dt~G~l~P~---~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA 210 (467)
T PRK14041 155 YLEFARELVDMGVDSICIKDMAGLLTPK---RAYELVKALKKKFG-VPVEVHSHCTTGLA 210 (467)
T ss_pred HHHHHHHHHHcCCCEEEECCccCCcCHH---HHHHHHHHHHHhcC-CceEEEecCCCCcH
Confidence 1110 03455544 44555666666775 33355688776553
No 63
>PRK05402 glycogen branching enzyme; Provisional
Probab=64.50 E-value=30 Score=38.65 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=58.1
Q ss_pred cHHHH-HHHHHcCCCceeecccccc-------cccCCCCCCCh--hhhHHHHHHHHHHHHCCCeEEEEe--cCCCCc---
Q 046009 117 YKEDV-KLMADTGLDAYRFSISWSR-------LIPNGRGPVNP--KGLQYYNSLINELISHGIQPHVTL--HHYDLP--- 181 (398)
Q Consensus 117 y~eDi-~l~~~lG~~~~R~sI~Wsr-------i~P~g~g~~n~--~~~~~Y~~~i~~l~~~GI~p~vtL--~H~d~P--- 181 (398)
..+.+ +.+++||++++=+.=-... -.|..--.+++ ...+-++++|++|+++||++|+++ .|+...
T Consensus 267 i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 346 (726)
T PRK05402 267 LADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHFPKDAHG 346 (726)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc
Confidence 34453 7889999999876442111 11110001111 134568899999999999999995 465321
Q ss_pred --------HhHH-h----hhCCC-------CChhhHHHHHHHHHHHHHHhC
Q 046009 182 --------QALE-D----EYGGW-------INQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 182 --------~~l~-~----~~gGw-------~~~~~~~~F~~ya~~~~~~fg 212 (398)
.+.. + .+..| .++++.+.+.+-++.-+++||
T Consensus 347 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 347 LARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred hhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 1100 0 01123 477888899998888888887
No 64
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=64.25 E-value=1.6e+02 Score=29.40 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=32.6
Q ss_pred ccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCC
Q 046009 140 RLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHY 178 (398)
Q Consensus 140 ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~ 178 (398)
+..|...+-++.+-+..++++.+.++++|-+.++=|+|-
T Consensus 62 ~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 62 RITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred CCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 344444456788889999999999999999999999995
No 65
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=64.03 E-value=38 Score=34.10 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=46.2
Q ss_pred HHHHHHHHHCCCeEEEEecCCCCc--------HhHHh---h----------h--------C---CCCChhhHHHHHHHHH
Q 046009 158 NSLINELISHGIQPHVTLHHYDLP--------QALED---E----------Y--------G---GWINQTIVQDFTAYAN 205 (398)
Q Consensus 158 ~~~i~~l~~~GI~p~vtL~H~d~P--------~~l~~---~----------~--------g---Gw~~~~~~~~F~~ya~ 205 (398)
+++|++|++.|++.++.++-+-.+ ..-+. . | + .++||+..+.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 789999999999988887644222 22110 0 0 1 2578898898888777
Q ss_pred HHHHHhCCCceeEEEccCchhh
Q 046009 206 VCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 206 ~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
.+....|- .-+|.=+|||..+
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~~ 169 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSNF 169 (339)
T ss_pred HHHhcCCC-cEEEecCCCCchH
Confidence 76665543 3567899999643
No 66
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=62.96 E-value=19 Score=36.43 Aligned_cols=102 Identities=17% Similarity=0.241 Sum_probs=60.3
Q ss_pred cHHHHHHHHHcCCCceeecccccccccCC---CCCCChhhhHHHHHHHHHHHHCCCeEE-EEecCCCCcHhHHhhhCCCC
Q 046009 117 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNSLINELISHGIQPH-VTLHHYDLPQALEDEYGGWI 192 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~Wsri~P~g---~g~~n~~~~~~Y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~~gGw~ 192 (398)
=+|.++.|+++|++ |+||...-.-++- -|... ..+-+.+.|+.+++.|+..+ +++. +++|. .
T Consensus 98 t~e~l~~l~~~G~~--rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dli-~GlPg---------q 163 (374)
T PRK05799 98 TEEKLKILKSMGVN--RLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDLM-FGLPN---------Q 163 (374)
T ss_pred CHHHHHHHHHcCCC--EEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEee-cCCCC---------C
Confidence 36789999999999 5555443333321 12211 24567789999999999744 5553 55552 2
Q ss_pred ChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhhhhcccccC
Q 046009 193 NQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAFALLGYDIG 235 (398)
Q Consensus 193 ~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~g 235 (398)
+.+.|.+-.+.+.+.=-++|..+...-+|+.....-+..|
T Consensus 164 ---t~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l~~~~~~g 203 (374)
T PRK05799 164 ---TLEDWKETLEKVVELNPEHISCYSLIIEEGTPFYNLYENG 203 (374)
T ss_pred ---CHHHHHHHHHHHHhcCCCEEEEeccEecCCCHHHHHHhcC
Confidence 2455666666665433366766655558876543333334
No 67
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=62.64 E-value=36 Score=33.69 Aligned_cols=84 Identities=17% Similarity=0.108 Sum_probs=51.2
Q ss_pred HHHHHcCCCceeeccc--ccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHH
Q 046009 122 KLMADTGLDAYRFSIS--WSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQD 199 (398)
Q Consensus 122 ~l~~~lG~~~~R~sI~--Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~ 199 (398)
+.+++.|++++-++.. -....|.-.|.............|..|+++|++++|.+--+.-... -.+...++.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~~ 91 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSADQ 91 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHHH
Confidence 5677889998887653 1222222111111011234567899999999999999843321100 014467888
Q ss_pred HHHHHHHHHHHhC
Q 046009 200 FTAYANVCFREFG 212 (398)
Q Consensus 200 F~~ya~~~~~~fg 212 (398)
|++....+.++||
T Consensus 92 ~~~a~~~~i~~y~ 104 (294)
T cd06543 92 LAAAYQKVIDAYG 104 (294)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888887
No 68
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=62.58 E-value=27 Score=38.16 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=58.1
Q ss_pred cccCcHHH-----HHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCc----Hh
Q 046009 113 GYHKYKED-----VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLP----QA 183 (398)
Q Consensus 113 ~y~~y~eD-----i~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P----~~ 183 (398)
.|.+|.+| ++..++.|++.+|+....+.+ +-....|+..+++|.....++.+=+-| ..
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~ 156 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQT 156 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHH
Confidence 46777666 999999999999998654433 234455666666666655444432223 11
Q ss_pred HHhh----------------hCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 184 LEDE----------------YGGWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 184 l~~~----------------~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
+.+. -.|-..|. ...+.++.+-+++ +..-...+.|-..+.
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~---~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA 212 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDMAGLLKPY---AAYELVSRIKKRV-DVPLHLHCHATTGLS 212 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhc-CCeEEEEECCCCchH
Confidence 1110 03445544 4555556666666 333456788888664
No 69
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=62.54 E-value=24 Score=33.93 Aligned_cols=58 Identities=22% Similarity=0.205 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHCCCeEEEEe
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNSLINELISHGIQPHVTL 175 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL 175 (398)
.+|++...+.|++.+|+.++.+.+.-.. -+.--++.++...++++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999887653210 222234678889999999999999887655
No 70
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=62.07 E-value=20 Score=34.17 Aligned_cols=76 Identities=16% Similarity=0.360 Sum_probs=52.7
Q ss_pred ccccCcHHHHHHHHHcCCCceee----------------------cccccccccCCCCCCChhhhHHHHHHHHHHHHCCC
Q 046009 112 DGYHKYKEDVKLMADTGLDAYRF----------------------SISWSRLIPNGRGPVNPKGLQYYNSLINELISHGI 169 (398)
Q Consensus 112 d~y~~y~eDi~l~~~lG~~~~R~----------------------sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI 169 (398)
|.--.-+.-++++++||.+++.| ++ | +||. |-+| ++.+.+++..+++.|+
T Consensus 132 ~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPT--GGId---l~Nf~~I~~i~ldaGv 203 (236)
T TIGR03581 132 EAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPT--GGID---LDNFEEIVQIALDAGV 203 (236)
T ss_pred CceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCC--CCcc---HHhHHHHHHHHHHcCC
Confidence 34456778899999999998886 55 3 6887 5677 7788999999999999
Q ss_pred eEEEEecCCCCcHhHHhhhCCCCChhhHHH
Q 046009 170 QPHVTLHHYDLPQALEDEYGGWINQTIVQD 199 (398)
Q Consensus 170 ~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~ 199 (398)
+-++ .|.-- .+-|+-.|-+.++-+..
T Consensus 204 ~kvi--PHIYs--siIDk~tG~TrpedV~~ 229 (236)
T TIGR03581 204 EKVI--PHVYS--SIIDKETGNTRVEDVKQ 229 (236)
T ss_pred Ceec--cccce--eccccccCCCCHHHHHH
Confidence 8763 23111 11234356777665443
No 71
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=61.78 E-value=16 Score=40.61 Aligned_cols=55 Identities=18% Similarity=0.386 Sum_probs=39.0
Q ss_pred HHHHHHcCCCceee----cccccccccC-CC---------------CC--CCh---hhhHHHHHHHHHHHHCCCeEEEEe
Q 046009 121 VKLMADTGLDAYRF----SISWSRLIPN-GR---------------GP--VNP---KGLQYYNSLINELISHGIQPHVTL 175 (398)
Q Consensus 121 i~l~~~lG~~~~R~----sI~Wsri~P~-g~---------------g~--~n~---~~~~~Y~~~i~~l~~~GI~p~vtL 175 (398)
|+.+|+||++++.+ ++.+.+-.++ |. |. .++ ..+.=+++||++|+++||++|++.
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999995 3333333221 10 11 133 257789999999999999999985
No 72
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=61.57 E-value=4.6 Score=32.32 Aligned_cols=19 Identities=42% Similarity=0.747 Sum_probs=14.0
Q ss_pred HHHHhCC--CceeEEEccC-ch
Q 046009 207 CFREFGD--RVSYWTTVNE-PN 225 (398)
Q Consensus 207 ~~~~fgd--~V~~w~t~NE-P~ 225 (398)
++++||+ +|.+|.++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567775 7999999999 76
No 73
>PRK14706 glycogen branching enzyme; Provisional
Probab=61.19 E-value=29 Score=38.19 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=53.8
Q ss_pred HHHHHcCCCceeecc--------cccccccCCCCCCCh--hhhHHHHHHHHHHHHCCCeEEEEec--CCCC---------
Q 046009 122 KLMADTGLDAYRFSI--------SWSRLIPNGRGPVNP--KGLQYYNSLINELISHGIQPHVTLH--HYDL--------- 180 (398)
Q Consensus 122 ~l~~~lG~~~~R~sI--------~Wsri~P~g~g~~n~--~~~~~Y~~~i~~l~~~GI~p~vtL~--H~d~--------- 180 (398)
+.+|+||++++-+.- +|.- .|.+--.++. ...+=++.+|++|+++||++++.+. |+.-
T Consensus 175 ~ylk~lG~t~velmPv~e~~~~~~wGY-~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~d 253 (639)
T PRK14706 175 EYVTYMGYTHVELLGVMEHPFDGSWGY-QVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFD 253 (639)
T ss_pred HHHHHcCCCEEEccchhcCCCCCCCCc-CcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccC
Confidence 678999999977532 1210 0000000111 1234588999999999999999854 5421
Q ss_pred --cHh-HHhhhCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 046009 181 --PQA-LEDEYGG----W-------INQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 181 --P~~-l~~~~gG----w-------~~~~~~~~F~~ya~~~~~~fg 212 (398)
|.+ ..+...| | .++++.+.+.+=++.-+++|+
T Consensus 254 g~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 254 GGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 111 0000011 2 267888888899999999887
No 74
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=61.17 E-value=42 Score=36.72 Aligned_cols=99 Identities=10% Similarity=0.124 Sum_probs=60.3
Q ss_pred ccCcHHHH-HHHHHcCCCceee-ccccccc------ccCCCCCCCh--hhhHHHHHHHHHHHHCCCeEEEEec--CCCC-
Q 046009 114 YHKYKEDV-KLMADTGLDAYRF-SISWSRL------IPNGRGPVNP--KGLQYYNSLINELISHGIQPHVTLH--HYDL- 180 (398)
Q Consensus 114 y~~y~eDi-~l~~~lG~~~~R~-sI~Wsri------~P~g~g~~n~--~~~~~Y~~~i~~l~~~GI~p~vtL~--H~d~- 180 (398)
|.-..+.+ +.+++||++++=+ .|....- .|..--.++. ...+=++++|++|+++||++|+.+- |...
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~ 234 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPKD 234 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCCc
Confidence 33344564 8899999999987 3332210 0010001111 1234588999999999999999854 5431
Q ss_pred ----------cHhHHh--h---hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 046009 181 ----------PQALED--E---YGGW-------INQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 181 ----------P~~l~~--~---~gGw-------~~~~~~~~F~~ya~~~~~~fg 212 (398)
|.+... . +..| .++++.+.+.+-++.-+++|+
T Consensus 235 ~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 235 DHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111110 0 0112 467888999999999999987
No 75
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=60.76 E-value=12 Score=39.54 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=42.7
Q ss_pred cccCcHHHHHHHHHcCCCceeeccccccc--------ccCC---------CCCCChh--hhHHHHHHHHHHHHCCCeEEE
Q 046009 113 GYHKYKEDVKLMADTGLDAYRFSISWSRL--------IPNG---------RGPVNPK--GLQYYNSLINELISHGIQPHV 173 (398)
Q Consensus 113 ~y~~y~eDi~l~~~lG~~~~R~sI~Wsri--------~P~g---------~g~~n~~--~~~~Y~~~i~~l~~~GI~p~v 173 (398)
.|....+-++.+++||++++=++-...-. .|.- .|.+|+. ..+=++++|++|+++||++|+
T Consensus 20 ~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 20 LWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 34445677899999999999876643321 1110 0122322 345689999999999999999
Q ss_pred Eec
Q 046009 174 TLH 176 (398)
Q Consensus 174 tL~ 176 (398)
++-
T Consensus 100 D~V 102 (479)
T PRK09441 100 DVV 102 (479)
T ss_pred EEC
Confidence 853
No 76
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=60.71 E-value=55 Score=32.56 Aligned_cols=79 Identities=13% Similarity=0.194 Sum_probs=48.2
Q ss_pred CChhhhHHHHHHHHHHHHCCCeEEEEecCC---CCcHhHHhh---h-----------------CC---CCChhhHHHHHH
Q 046009 149 VNPKGLQYYNSLINELISHGIQPHVTLHHY---DLPQALEDE---Y-----------------GG---WINQTIVQDFTA 202 (398)
Q Consensus 149 ~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~---d~P~~l~~~---~-----------------gG---w~~~~~~~~F~~ 202 (398)
+|.+.+.--+++|++|+++|++.++.++-+ +.+.+-+-+ | ++ ++||++.+.|.+
T Consensus 60 ~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~ 139 (319)
T cd06591 60 FDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWK 139 (319)
T ss_pred EChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHH
Confidence 344444456799999999999988876422 122111100 0 11 578888888776
Q ss_pred HHHHHHHHhCCCceeEEEccCchhhh
Q 046009 203 YANVCFREFGDRVSYWTTVNEPNAFA 228 (398)
Q Consensus 203 ya~~~~~~fgd~V~~w~t~NEP~~~~ 228 (398)
..+..+...|= --+|+=+|||....
T Consensus 140 ~~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 140 QLKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred HHHHHhhcCCC-cEEEecCCCCCccC
Confidence 55544444332 45678999998653
No 77
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=60.36 E-value=61 Score=32.89 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=62.4
Q ss_pred CCccccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhC
Q 046009 110 ASDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYG 189 (398)
Q Consensus 110 a~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~g 189 (398)
|-=||+ |+-= -...+.|+..+|+ - ||.+-.+ +...++++.++++||-.=+..+|-.+.+-+.++||
T Consensus 79 aDiHf~-~rla-~~~~~~g~~k~RI-------N---PGNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~ 144 (361)
T COG0821 79 ADIHFD-YRLA-LEAAECGVDKVRI-------N---PGNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYG 144 (361)
T ss_pred EEeecc-HHHH-HHhhhcCcceEEE-------C---CcccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhc
Confidence 333555 4332 3334667888874 3 3444332 27889999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHH
Q 046009 190 GWINQTIVQDFTAYANVCFR 209 (398)
Q Consensus 190 Gw~~~~~~~~F~~ya~~~~~ 209 (398)
+-+.+..++--.++++.+-+
T Consensus 145 ~pt~ealveSAl~~a~~~e~ 164 (361)
T COG0821 145 GPTPEALVESALEHAELLEE 164 (361)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 87777777777777776544
No 78
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=60.33 E-value=28 Score=32.96 Aligned_cols=80 Identities=14% Similarity=0.031 Sum_probs=54.5
Q ss_pred HHHHHHHHHcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhh
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTI 196 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~ 196 (398)
+++++.+++.|++.+|++++-+.+.-.- .+.=.+..++...+.++.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 8999999999999999999876321110 011122357788899999999999999999543322 123
Q ss_pred HHHHHHHHHHHHH
Q 046009 197 VQDFTAYANVCFR 209 (398)
Q Consensus 197 ~~~F~~ya~~~~~ 209 (398)
.+.+.++++.+.+
T Consensus 145 ~~~l~~~~~~~~~ 157 (265)
T cd03174 145 PEYVLEVAKALEE 157 (265)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666666543
No 79
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=59.51 E-value=28 Score=34.22 Aligned_cols=83 Identities=10% Similarity=0.038 Sum_probs=59.9
Q ss_pred CcHHHHHHHHHcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCCh
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQ 194 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~ 194 (398)
+-+.|++.+.+.|++.+++.++=|...-.. -+.--++.++...++++.+++.|+++.+++-+|+.|. +
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r 143 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------R 143 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------c
Confidence 346799999999999999998555433221 1233356789999999999999999999998776552 1
Q ss_pred hhHHHHHHHHHHHHH
Q 046009 195 TIVQDFTAYANVCFR 209 (398)
Q Consensus 195 ~~~~~F~~ya~~~~~ 209 (398)
..++.+.++++.+.+
T Consensus 144 ~~~~~~~~~~~~~~~ 158 (280)
T cd07945 144 DSPDYVFQLVDFLSD 158 (280)
T ss_pred CCHHHHHHHHHHHHH
Confidence 124566777776654
No 80
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=58.86 E-value=2.1e+02 Score=28.88 Aligned_cols=39 Identities=15% Similarity=0.235 Sum_probs=32.2
Q ss_pred cccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCC
Q 046009 141 LIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYD 179 (398)
Q Consensus 141 i~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d 179 (398)
..|...+-++.+.+..++++.+.++++|-+.++=|.|.+
T Consensus 63 ~~~~~~~l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G 101 (338)
T cd02933 63 GYPNTPGIYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVG 101 (338)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHHHhcCCeEEEEcccCc
Confidence 344334566888899999999999999999999999954
No 81
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=58.68 E-value=53 Score=32.00 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=38.5
Q ss_pred cHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 117 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
-++|++...+.|++.+|+.+..+. ++...+.++.+++.|+++.+++.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~-------------~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND-------------VRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh-------------HHHHHHHHHHHHHCCCeEEEEEE
Confidence 478899999999999999875444 45677889999999999887663
No 82
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=58.67 E-value=16 Score=39.30 Aligned_cols=62 Identities=15% Similarity=0.271 Sum_probs=41.2
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCCCC-------CCCh--hhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRG-------PVNP--KGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g-------~~n~--~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
+.-..+-++.+++||++++=++--...-.-. .| .+|+ ...+-++++|++++++||++|+++-
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~-~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQKD-NGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCCC-CCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4445677899999999998765433221000 01 1222 1345688999999999999999854
No 83
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=58.62 E-value=69 Score=31.86 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=49.6
Q ss_pred CChhhhHHHHHHHHHHHHCCCeEEEEecCCC-----CcHhHHhh------------------------hCCCCChhhHHH
Q 046009 149 VNPKGLQYYNSLINELISHGIQPHVTLHHYD-----LPQALEDE------------------------YGGWINQTIVQD 199 (398)
Q Consensus 149 ~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d-----~P~~l~~~------------------------~gGw~~~~~~~~ 199 (398)
+|++.+.-.+++|+.|++.|++.++.++-+= .|...+.. +-.|+||+..+.
T Consensus 58 ~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~w 137 (317)
T cd06600 58 WDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREW 137 (317)
T ss_pred echhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHH
Confidence 4444444456899999999999887765331 12221110 012579999999
Q ss_pred HHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 200 FTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 200 F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
|.+..+.+....|- .-+|+=+|||..+
T Consensus 138 w~~~~~~~~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 138 WAGLFSEWLNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred HHHHHHHHhhcCCC-ceEEeeCCCCccH
Confidence 98888776655442 3467899999743
No 84
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=58.59 E-value=57 Score=32.75 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=49.2
Q ss_pred HHHHHHHHHHCCCeEEEEecCCC-----CcHhHHhh-------------h--------C---CCCChhhHHHHHHHHHHH
Q 046009 157 YNSLINELISHGIQPHVTLHHYD-----LPQALEDE-------------Y--------G---GWINQTIVQDFTAYANVC 207 (398)
Q Consensus 157 Y~~~i~~l~~~GI~p~vtL~H~d-----~P~~l~~~-------------~--------g---Gw~~~~~~~~F~~ya~~~ 207 (398)
-+.+|++|++.|++.++.++-+- .|..-+.+ | + .++||++++.|.+..+.+
T Consensus 66 p~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06603 66 PEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYD 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHH
Confidence 46789999999999888876442 22221111 0 1 257999999999988877
Q ss_pred HHHhC-CCceeEEEccCchhhh
Q 046009 208 FREFG-DRVSYWTTVNEPNAFA 228 (398)
Q Consensus 208 ~~~fg-d~V~~w~t~NEP~~~~ 228 (398)
....+ +-.-.|.=+|||.++.
T Consensus 146 ~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 146 KYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hhcccCCCceEEeccCCccccC
Confidence 66433 2356789999998753
No 85
>PLN02784 alpha-amylase
Probab=58.37 E-value=19 Score=40.83 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=46.7
Q ss_pred ccccCcHHHHHHHHHcCCCceeecccccccccCCCCC-----CChh--hhHHHHHHHHHHHHCCCeEEEEe
Q 046009 112 DGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGP-----VNPK--GLQYYNSLINELISHGIQPHVTL 175 (398)
Q Consensus 112 d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~-----~n~~--~~~~Y~~~i~~l~~~GI~p~vtL 175 (398)
.+|....+.++.+++||++++=++-.-....+.|-.. +|.. ..+-++++|++++++||++++++
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 4688899999999999999998766544333333111 2221 34568899999999999999984
No 86
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=58.18 E-value=67 Score=31.95 Aligned_cols=107 Identities=15% Similarity=0.260 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCC--ceeecccccccccC----CCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCC---CCcHhHHhh--
Q 046009 119 EDVKLMADTGLD--AYRFSISWSRLIPN----GRGPVNPKGLQYYNSLINELISHGIQPHVTLHHY---DLPQALEDE-- 187 (398)
Q Consensus 119 eDi~l~~~lG~~--~~R~sI~Wsri~P~----g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~---d~P~~l~~~-- 187 (398)
+-++-+++.|+. ++=+++.|...... +.=.+|++-+.--+++|+.|+++|++.++.++-+ +.|..-+.+
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~ 107 (317)
T cd06598 28 DTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKA 107 (317)
T ss_pred HHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhC
Confidence 344555555543 45555566433221 1122344444445789999999999999887644 333321100
Q ss_pred -h-------------------C---CCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 188 -Y-------------------G---GWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 188 -~-------------------g---Gw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
| + .++||++.+.|.+..+.+ ...| ---+|.=+|||...
T Consensus 108 g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~G-vdg~w~D~~Ep~~~ 168 (317)
T cd06598 108 GALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQG-VTGWWGDLGEPEVH 168 (317)
T ss_pred CCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCC-ccEEEecCCCcccc
Confidence 0 1 246899999888877765 2232 12357899999754
No 87
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=58.06 E-value=37 Score=34.49 Aligned_cols=52 Identities=15% Similarity=0.296 Sum_probs=43.3
Q ss_pred HHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEe
Q 046009 121 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTL 175 (398)
Q Consensus 121 i~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL 175 (398)
++.++++|.+++-+-+-|. |+.+..+|..-++...++.++|+++||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5678999999999999877 553334577788899999999999999998864
No 88
>PRK14705 glycogen branching enzyme; Provisional
Probab=57.99 E-value=47 Score=39.39 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=57.6
Q ss_pred HHH-HHHHHHcCCCceeecc--------cccccccCCCCCCCh--hhhHHHHHHHHHHHHCCCeEEEEec--CCCCcHhH
Q 046009 118 KED-VKLMADTGLDAYRFSI--------SWSRLIPNGRGPVNP--KGLQYYNSLINELISHGIQPHVTLH--HYDLPQAL 184 (398)
Q Consensus 118 ~eD-i~l~~~lG~~~~R~sI--------~Wsri~P~g~g~~n~--~~~~~Y~~~i~~l~~~GI~p~vtL~--H~d~P~~l 184 (398)
.+. ++.+|+||++++-+.= +|. -.|.+--.++. ...+=++.+|++|+++||.+|+++- |+..=.|.
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~ 846 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWA 846 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCcchhh
Confidence 334 6899999999986532 341 11111001111 1244588999999999999999854 55211121
Q ss_pred Hhhh----------------CC-------CCChhhHHHHHHHHHHHHHHhC
Q 046009 185 EDEY----------------GG-------WINQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 185 ~~~~----------------gG-------w~~~~~~~~F~~ya~~~~~~fg 212 (398)
...+ .. +.++++.+.+.+=+..-+++|+
T Consensus 847 l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 847 LAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred hhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1111 11 2467788888888888899987
No 89
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=57.31 E-value=42 Score=32.64 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecC
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHH 177 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H 177 (398)
.+|++...+.|++.+|+++..+ .++...++++.++++|+++.+.+.+
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 5889999999999999987432 3667889999999999999999865
No 90
>PRK03705 glycogen debranching enzyme; Provisional
Probab=57.15 E-value=23 Score=39.18 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=56.0
Q ss_pred HHHHHHcCCCceeeccc-----------------c-------cccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 121 VKLMADTGLDAYRFSIS-----------------W-------SRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 121 i~l~~~lG~~~~R~sI~-----------------W-------sri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
++.+++||++++=+.=- | -.+.|. -|.-....++-+++||++|+++||++|+++-
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~-ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPA-YASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccc-cCCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 89999999999876321 1 122222 1111112356799999999999999999853
Q ss_pred --CCC-----CcH----------hH--Hh--hh---CC------CCChhhHHHHHHHHHHHHHHhC
Q 046009 177 --HYD-----LPQ----------AL--ED--EY---GG------WINQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 177 --H~d-----~P~----------~l--~~--~~---gG------w~~~~~~~~F~~ya~~~~~~fg 212 (398)
|-. -|. +. .+ .| .| +.++.+.+.+.+-++.-+++||
T Consensus 264 ~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 264 FNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred ccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 432 111 11 00 01 11 2367788888888888888876
No 91
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=56.52 E-value=33 Score=34.90 Aligned_cols=108 Identities=13% Similarity=-0.007 Sum_probs=70.2
Q ss_pred CcHHHHHHHHHcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCC--CcHhHHhh-----
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYD--LPQALEDE----- 187 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d--~P~~l~~~----- 187 (398)
-.++|++.+.+.|++.+|+.++-|.+.-.. -+.-.++.++...+.++.+++.|+++.+++-... -|..+.+-
T Consensus 72 ~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~ 151 (363)
T TIGR02090 72 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAE 151 (363)
T ss_pred cCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHH
Confidence 358999999999999999988776654221 1222345688899999999999999998875431 13322211
Q ss_pred -h----------CCCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 188 -Y----------GGWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 188 -~----------gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
. -|-.. ++.+.++.+.+.++++ ..--+.+.|-..+.
T Consensus 152 ~~g~~~i~l~DT~G~~~---P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA 198 (363)
T TIGR02090 152 EAGADRINIADTVGVLT---PQKMEELIKKLKENVK-LPISVHCHNDFGLA 198 (363)
T ss_pred hCCCCEEEEeCCCCccC---HHHHHHHHHHHhcccC-ceEEEEecCCCChH
Confidence 1 23333 4456666666666665 22345678877653
No 92
>PRK10785 maltodextrin glucosidase; Provisional
Probab=56.41 E-value=19 Score=39.14 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=39.0
Q ss_pred cHHHHHHHHHcCCCceeecccc-------------cccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 117 YKEDVKLMADTGLDAYRFSISW-------------SRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~W-------------sri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
..+-++.+++||++++=++--. -+|.|. -| ..+-++++|++++++||++|+++-
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~-~G-----t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQ-LG-----GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcc-cC-----CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4566899999999998775422 222222 11 345688999999999999999864
No 93
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.92 E-value=85 Score=30.91 Aligned_cols=150 Identities=19% Similarity=0.212 Sum_probs=83.0
Q ss_pred cccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCC---cHhHH---------hhhCCC-----C----ChhhHHH
Q 046009 141 LIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDL---PQALE---------DEYGGW-----I----NQTIVQD 199 (398)
Q Consensus 141 i~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~---P~~l~---------~~~gGw-----~----~~~~~~~ 199 (398)
..|...|-++++-+..++++.+.++++|-+.++=|.|-.. |.... ...... . =+++++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~ 142 (327)
T cd02803 63 GYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIED 142 (327)
T ss_pred CCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHH
Confidence 3444457788899999999999999999999999998431 10000 000000 1 1357888
Q ss_pred HHHHHHHHHHHhC-CCceeEEEccCchhhhhcccccCCC-CCCC--CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 046009 200 FTAYANVCFREFG-DRVSYWTTVNEPNAFALLGYDIGIA-PPKR--CSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARL 275 (398)
Q Consensus 200 F~~ya~~~~~~fg-d~V~~w~t~NEP~~~~~~gy~~g~~-~Pg~--~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~ 275 (398)
|++-|+.+.+. | |-| .+.+-.||+...| .|.. +.+. .|.+ +-|-..--...++.
T Consensus 143 ~~~aA~~a~~a-GfDgv---------eih~~~gyL~~qFlsp~~n~R~d~-----yGgs-------~enr~r~~~eii~a 200 (327)
T cd02803 143 FAAAARRAKEA-GFDGV---------EIHGAHGYLLSQFLSPYTNKRTDE-----YGGS-------LENRARFLLEIVAA 200 (327)
T ss_pred HHHHHHHHHHc-CCCEE---------EEcchhhhHHHHhcCccccCCCcc-----cCCC-------HHHHHHHHHHHHHH
Confidence 88888777654 4 333 2344567776543 3421 1111 1111 12333333456677
Q ss_pred HHHhcCCCCcceEEEEeecCccccCCCCHHHH-HHHHHHh
Q 046009 276 YRKNYQDKQHGYIGMSIFTYGLLPLTNSTEDA-IATQRYN 314 (398)
Q Consensus 276 ~r~~~~~~~~gkIGi~~~~~~~yP~s~~p~D~-~Aa~~~~ 314 (398)
+|+..+. +..||+-++.....+...++++. ..+++..
T Consensus 201 vr~~~g~--d~~i~vris~~~~~~~g~~~~e~~~la~~l~ 238 (327)
T cd02803 201 VREAVGP--DFPVGVRLSADDFVPGGLTLEEAIEIAKALE 238 (327)
T ss_pred HHHHcCC--CceEEEEechhccCCCCCCHHHHHHHHHHHH
Confidence 7776431 34688887765544433345553 3344433
No 94
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=55.69 E-value=74 Score=32.96 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=60.3
Q ss_pred cHHHHHHHHHcCCCceeecccccccccC---CCCC--CChhhh-HHHHHHHHHHHHCCCeEEEEec----------CCCC
Q 046009 117 YKEDVKLMADTGLDAYRFSISWSRLIPN---GRGP--VNPKGL-QYYNSLINELISHGIQPHVTLH----------HYDL 180 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~Wsri~P~---g~g~--~n~~~~-~~Y~~~i~~l~~~GI~p~vtL~----------H~d~ 180 (398)
..+.++.++++|++.+-+.--|..---+ +-|. +|++-+ +-...+++.+++.|+++=+=+- .-..
T Consensus 60 i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~h 139 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREH 139 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSS
T ss_pred HHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhC
Confidence 4556788999999999999999643111 0121 233222 1267999999999999755431 1246
Q ss_pred cHhHHhhhC-----C-------CCChhhHHHHHHHHHHHHHHhC
Q 046009 181 PQALEDEYG-----G-------WINQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 181 P~~l~~~~g-----G-------w~~~~~~~~F~~ya~~~~~~fg 212 (398)
|.|+...-+ | ..+|++.+...+-...+++.+|
T Consensus 140 Pdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 140 PDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp BGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred ccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 888753211 1 3578888888888888888887
No 95
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=55.14 E-value=33 Score=37.05 Aligned_cols=61 Identities=18% Similarity=0.373 Sum_probs=42.0
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCCC-C-------CCCh--hhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-G-------PVNP--KGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~-g-------~~n~--~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
+.-..+.++.+++||++++=++--+.. |... | .+|+ ...+-++++|++++++||++|+++-
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 444567899999999999977554321 1111 1 1222 1345689999999999999999864
No 96
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=54.74 E-value=41 Score=37.90 Aligned_cols=101 Identities=24% Similarity=0.406 Sum_probs=64.7
Q ss_pred cCCCceeeccc-ccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCC---CCcHhHHh--h-h-----------
Q 046009 127 TGLDAYRFSIS-WSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHY---DLPQALED--E-Y----------- 188 (398)
Q Consensus 127 lG~~~~R~sI~-Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~---d~P~~l~~--~-~----------- 188 (398)
+=++++++++. |.+ .-+.-.+|+.-+---+.||+.|++.||+.++.+... |.|..=+. + |
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~ 371 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQ 371 (772)
T ss_pred CcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEee
Confidence 45678999995 876 122234555555556699999999999999988742 33322111 1 0
Q ss_pred -------C---CCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhhhhc
Q 046009 189 -------G---GWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAFALL 230 (398)
Q Consensus 189 -------g---Gw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~ 230 (398)
+ .++||+.++.|.+....-...+| -.-+|.=+|||.+....
T Consensus 372 ~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 372 ADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGD 422 (772)
T ss_pred ecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCcccccc
Confidence 1 15799999999873322223332 25678999999987543
No 97
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=54.42 E-value=82 Score=32.20 Aligned_cols=55 Identities=15% Similarity=0.194 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHH
Q 046009 155 QYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFR 209 (398)
Q Consensus 155 ~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~ 209 (398)
+..+++++.++++|+-.=+..+|-.++.-+.++||+-+.+..++.-.++++.+-+
T Consensus 117 ~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~ 171 (360)
T PRK00366 117 ERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEE 171 (360)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999999999999999664555677777777776633
No 98
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=54.29 E-value=53 Score=36.96 Aligned_cols=103 Identities=17% Similarity=0.311 Sum_probs=66.2
Q ss_pred HHHHHHcCCC--ceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec---CCCCcH-----------hH
Q 046009 121 VKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH---HYDLPQ-----------AL 184 (398)
Q Consensus 121 i~l~~~lG~~--~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~---H~d~P~-----------~l 184 (398)
++.+.++|+. ..=..|+|-.-. ++-.+|........++++.|+++|++-++++. +-+... |+
T Consensus 317 v~~~~~agiPld~~~~DiDyMd~y--kDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v~I 394 (805)
T KOG1065|consen 317 VENYRAAGIPLDVIVIDIDYMDGY--KDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDVLI 394 (805)
T ss_pred HHHHHHcCCCcceeeeehhhhhcc--cceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhceee
Confidence 5666777776 555555554322 23456777777789999999999999999987 323320 11
Q ss_pred Hhhh----------CC------CCChhhHHHHHHHHHHHHHHhCCCce---eEEEccCchhhhh
Q 046009 185 EDEY----------GG------WINQTIVQDFTAYANVCFREFGDRVS---YWTTVNEPNAFAL 229 (398)
Q Consensus 185 ~~~~----------gG------w~~~~~~~~F~~ya~~~~~~fgd~V~---~w~t~NEP~~~~~ 229 (398)
.+.+ .| ++|+++++.+ ...+++|.+.|. +|+-.|||.-+..
T Consensus 395 ~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww----~~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 395 KNREGSPKMLGEVWPGSTAFPDFTNPAVVEWW----LDELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred ecccCchhhhcccCCCcccccccCCchHHHHH----HHHHHhhcccCCccceEEECCCcccCCC
Confidence 1100 12 4566555544 446668888875 8999999976653
No 99
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=54.24 E-value=31 Score=35.49 Aligned_cols=105 Identities=17% Similarity=0.220 Sum_probs=62.4
Q ss_pred cHHHHHHHHHcCCCceeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHCCCe-EEEEecCCCCcHhHHhhhCCCCC
Q 046009 117 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNSLINELISHGIQ-PHVTLHHYDLPQALEDEYGGWIN 193 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI-~Ws-ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~-p~vtL~H~d~P~~l~~~~gGw~~ 193 (398)
-++.++.|+++|++.+-+++ +-+ ++... -|+.- ..+-..+.++.+++.|++ +-++|- +++|. .
T Consensus 114 t~e~l~~l~~~GvnrislGvQS~~d~~L~~-l~R~~--~~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------q- 179 (400)
T PRK07379 114 DLEQLQGYRSLGVNRVSLGVQAFQDELLAL-CGRSH--RVKDIFAAVDLIHQAGIENFSLDLI-SGLPH---------Q- 179 (400)
T ss_pred CHHHHHHHHHCCCCEEEEEcccCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C-
Confidence 36889999999999666555 221 12211 12211 133456788999999998 556765 56663 1
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEEEccCchhhhhcccccCCC
Q 046009 194 QTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAFALLGYDIGIA 237 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~g~~ 237 (398)
+.+.+.+=.+.+.+-=-++|..+...-||...-..-+..|.+
T Consensus 180 --t~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 180 --TLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred --CHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 234444444444443336788887778888654444544543
No 100
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=54.03 E-value=35 Score=33.10 Aligned_cols=56 Identities=18% Similarity=0.154 Sum_probs=40.3
Q ss_pred cHHHHHHHHHcCCCceeeccccc-ccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEe
Q 046009 117 YKEDVKLMADTGLDAYRFSISWS-RLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTL 175 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~Ws-ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL 175 (398)
-+|.++.|+++|++.+-++++-+ ++.+.-.+.. .++.+.+.++.++++||...+.+
T Consensus 122 ~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 122 DPEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred CHHHHHHHHHcCCCEEEEcccCCHHHHhhccCCC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 38999999999999999998822 1333211222 35678889999999999865543
No 101
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=53.95 E-value=50 Score=32.51 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=60.4
Q ss_pred CcHHHHHHHHHcCCCceeecccccccccC-CCCCCChhhhHHHHHHHHHHHHCCCeEEEEecC-CCCcHhHHhhhCCCCC
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNSLINELISHGIQPHVTLHH-YDLPQALEDEYGGWIN 193 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~P~-g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H-~d~P~~l~~~~gGw~~ 193 (398)
+-.+|++...+.|++.+++.++=|...-. .-+.=-++.++...++|+..+++|+++..++.. |..| +.|..+
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~------~~~~~~ 153 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCP------YEGEVP 153 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCC------CCCCCC
Confidence 35899999999999999999865543211 123333467888999999999999999877763 4444 233333
Q ss_pred hhhHHHHHHHHHHHHHH
Q 046009 194 QTIVQDFTAYANVCFRE 210 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~ 210 (398)
.+.+.++++.+.+.
T Consensus 154 ---~~~~~~~~~~~~~~ 167 (287)
T PRK05692 154 ---PEAVADVAERLFAL 167 (287)
T ss_pred ---HHHHHHHHHHHHHc
Confidence 56777777777653
No 102
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=53.89 E-value=56 Score=32.96 Aligned_cols=89 Identities=17% Similarity=0.236 Sum_probs=63.2
Q ss_pred HHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHH
Q 046009 121 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDF 200 (398)
Q Consensus 121 i~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F 200 (398)
.+.++++|.++..+=+=|. |+++..+|..-.++.+++.++|++.||--++-+-.+|.+. .+. .+.+....-
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~--~d~----~~~~yak~k 181 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKI--ADN----GSVEYAKVK 181 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcc--ccc----ccHHHHhhC
Confidence 5789999999999988776 5766678888899999999999999999998887655432 122 122222222
Q ss_pred HHHHHHHHHHhCC---CceeE
Q 046009 201 TAYANVCFREFGD---RVSYW 218 (398)
Q Consensus 201 ~~ya~~~~~~fgd---~V~~w 218 (398)
-+.+-..++.|++ .|+.|
T Consensus 182 P~~V~~a~kefs~~~~gvDVl 202 (324)
T PRK12399 182 PHKVNEAMKVFSKPRFGVDVL 202 (324)
T ss_pred hHHHHHHHHHhccCCCCCcEE
Confidence 3334446777775 46666
No 103
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=52.93 E-value=52 Score=31.76 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHCCCeEEEEecCC--------------CCcHhHHhh----------------hCC----CCChh---h
Q 046009 154 LQYYNSLINELISHGIQPHVTLHHY--------------DLPQALEDE----------------YGG----WINQT---I 196 (398)
Q Consensus 154 ~~~Y~~~i~~l~~~GI~p~vtL~H~--------------d~P~~l~~~----------------~gG----w~~~~---~ 196 (398)
-+.++.+|+.-+++|.++|+||.=. ..|.|-..+ .+| ..+|+ .
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 3578999999999999999998621 112111000 011 11333 1
Q ss_pred HHHHHHHHHHHHHHhCCC-----ceeEEEccCchhhhhcccccCCCCCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Q 046009 197 VQDFTAYANVCFREFGDR-----VSYWTTVNEPNAFALLGYDIGIAPPKRCSPPFKNCRKGNSSTEPYMAVHHVLLAHAS 271 (398)
Q Consensus 197 ~~~F~~ya~~~~~~fgd~-----V~~w~t~NEP~~~~~~gy~~g~~~Pg~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~ 271 (398)
...-.+++..+..+||.. |++|..-|||.+..-- =...||-+ ..+.-+....++.|+
T Consensus 103 ~~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~~T--H~dVHP~~----------------~t~~El~~r~i~~Ak 164 (239)
T PF12891_consen 103 PVYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWHST--HRDVHPEP----------------VTYDELRDRSIEYAK 164 (239)
T ss_dssp EEEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHHHH--TTTT--S-------------------HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccccCCCceEEEecCchHhhccc--ccccCCCC----------------CCHHHHHHHHHHHHH
Confidence 122334466677777765 9999999999986420 00122221 224456666777777
Q ss_pred HHHHHHHhcCCCCcce-EEEEeecCccc
Q 046009 272 VARLYRKNYQDKQHGY-IGMSIFTYGLL 298 (398)
Q Consensus 272 Av~~~r~~~~~~~~gk-IGi~~~~~~~y 298 (398)
|+| +..|. ++ +|.+.-..+.|
T Consensus 165 aiK---~~DP~---a~v~GP~~wgw~~y 186 (239)
T PF12891_consen 165 AIK---AADPD---AKVFGPVEWGWCGY 186 (239)
T ss_dssp HHH---HH-TT---SEEEEEEE-SHHHH
T ss_pred HHH---hhCCC---CeEeechhhcccee
Confidence 764 45553 44 57764433333
No 104
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=52.54 E-value=61 Score=32.76 Aligned_cols=94 Identities=22% Similarity=0.302 Sum_probs=66.8
Q ss_pred HHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHH
Q 046009 120 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQD 199 (398)
Q Consensus 120 Di~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~ 199 (398)
+.+.++++|.++..+=+=|. |+++-.+|..-.++.+++.++|++.||--++-+-.+|.+. .+. .+++....
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~--~d~----~~~eyak~ 182 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERI--SDN----NSAAYAKL 182 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc--ccc----ccHHHHhh
Confidence 46889999999999988776 5666678888899999999999999999999887765432 111 23333333
Q ss_pred HHHHHHHHHHHhCC---CceeE---EEcc
Q 046009 200 FTAYANVCFREFGD---RVSYW---TTVN 222 (398)
Q Consensus 200 F~~ya~~~~~~fgd---~V~~w---~t~N 222 (398)
--+.+-..++.|++ .|+.| ++.|
T Consensus 183 kP~~V~~amkefs~~~~gvDVlKvEvPvn 211 (329)
T PRK04161 183 KPHKVNGAMKVFSDKRFGVDVLKVEVPVN 211 (329)
T ss_pred ChHHHHHHHHHhccCCCCCcEEEEecccc
Confidence 33334556677775 46666 3555
No 105
>PRK09505 malS alpha-amylase; Reviewed
Probab=52.01 E-value=38 Score=37.68 Aligned_cols=63 Identities=17% Similarity=0.333 Sum_probs=42.9
Q ss_pred cHHHHHHHHHcCCCceeecccccccc-----------cC-C-CC-------CCCh--hhhHHHHHHHHHHHHCCCeEEEE
Q 046009 117 YKEDVKLMADTGLDAYRFSISWSRLI-----------PN-G-RG-------PVNP--KGLQYYNSLINELISHGIQPHVT 174 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~Wsri~-----------P~-g-~g-------~~n~--~~~~~Y~~~i~~l~~~GI~p~vt 174 (398)
..+-++.+++||++++=++--...+. |. + .| .+|+ ...+=++++|++++++||++|++
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668899999999998875544331 10 0 01 1233 24567899999999999999998
Q ss_pred e--cCCC
Q 046009 175 L--HHYD 179 (398)
Q Consensus 175 L--~H~d 179 (398)
+ .|-.
T Consensus 312 ~V~NH~~ 318 (683)
T PRK09505 312 VVMNHTG 318 (683)
T ss_pred ECcCCCc
Confidence 5 4543
No 106
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=51.36 E-value=58 Score=34.53 Aligned_cols=135 Identities=13% Similarity=0.172 Sum_probs=76.1
Q ss_pred eehhhhhhhhhcCCCCCCCCCCccccccccc-CccCCC----CCcCC--ccccCcHHH-----HHHHHHcCCCceeeccc
Q 046009 70 IFGSGTSAYQVEGAANEDGRAPSIWDTFTHA-GNVHDN----GDIAS--DGYHKYKED-----VKLMADTGLDAYRFSIS 137 (398)
Q Consensus 70 lwG~AtSa~Q~EG~~~~~gk~~s~WD~~~~~-~~~~~~----~~~a~--d~y~~y~eD-----i~l~~~lG~~~~R~sI~ 137 (398)
.||+|| +++--.+. ..+-|+..... ..++++ --.+. =.|..|.+| +++.++.|++.+|..-.
T Consensus 54 ~wGGAt--fd~~~rfl----~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~ 127 (468)
T PRK12581 54 CWGGAT--FDACIRFL----NEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDA 127 (468)
T ss_pred ecCCcc--hhhhhccc----CCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEccc
Confidence 577666 66544432 24668776432 112110 01122 258889999 99999999999997653
Q ss_pred ccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHh----HHh------h----------hCCCCChhhH
Q 046009 138 WSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQA----LED------E----------YGGWINQTIV 197 (398)
Q Consensus 138 Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~----l~~------~----------~gGw~~~~~~ 197 (398)
... ++-....|+.+++.|.+..+++.+=+-|.. +.+ + -.|-..|..+
T Consensus 128 lnd-------------~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v 194 (468)
T PRK12581 128 LND-------------PRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAA 194 (468)
T ss_pred CCC-------------HHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHH
Confidence 221 334556777777777777777776555532 111 0 1455665533
Q ss_pred HHHHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 198 QDFTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 198 ~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
.+.++.+-+ ..+..-...+.|-..+.
T Consensus 195 ---~~Lv~alk~-~~~~pi~~H~Hnt~GlA 220 (468)
T PRK12581 195 ---KELVSGIKA-MTNLPLIVHTHATSGIS 220 (468)
T ss_pred ---HHHHHHHHh-ccCCeEEEEeCCCCccH
Confidence 334444433 33444456788887664
No 107
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=51.15 E-value=68 Score=33.41 Aligned_cols=88 Identities=14% Similarity=0.304 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCceeecc--cccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEE-EEecCCCCcHh--HHhhhCCCC
Q 046009 118 KEDVKLMADTGLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPH-VTLHHYDLPQA--LEDEYGGWI 192 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI--~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~-vtL~H~d~P~~--l~~~~gGw~ 192 (398)
.+|+..+.++.--.-|+++ .|.. +|.+.++ +.++++||+.- +...-|..|+. -.=++|...
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd~--------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLt 138 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWDK--------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLS 138 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCCc--------CCHHHHH------HHHHHcCCccceeccccccCcccccccccccccC
Confidence 5777878777766666665 7721 3655444 88999999988 77776776732 111346777
Q ss_pred Chh--hHHHHHHHHHHH---HHHhCCC-ceeEE
Q 046009 193 NQT--IVQDFTAYANVC---FREFGDR-VSYWT 219 (398)
Q Consensus 193 ~~~--~~~~F~~ya~~~---~~~fgd~-V~~w~ 219 (398)
||+ +.+...+-+..| .++.|.+ |..|+
T Consensus 139 nPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 139 HTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 765 667777776655 6667764 45553
No 108
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=50.60 E-value=62 Score=34.12 Aligned_cols=98 Identities=13% Similarity=0.111 Sum_probs=64.3
Q ss_pred cccCc-----HHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCc----Hh
Q 046009 113 GYHKY-----KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLP----QA 183 (398)
Q Consensus 113 ~y~~y-----~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P----~~ 183 (398)
.|.+| ++|++...+.|++.+|+.++-+.+. -..+.|+.+++.|+++.+++..-+-| ..
T Consensus 89 G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~ 155 (448)
T PRK12331 89 GYRNYADDVVESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSPVHTIDY 155 (448)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCCCCCHHH
Confidence 45665 5567999999999999988655541 25568899999999888777765545 22
Q ss_pred HHh---h-------------hCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 184 LED---E-------------YGGWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 184 l~~---~-------------~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
+.+ + -.|..+|. ...+.++.+-++++ ..-.+.+.|-..+.
T Consensus 156 ~~~~a~~l~~~Gad~I~i~Dt~G~l~P~---~v~~lv~alk~~~~-~pi~~H~Hnt~GlA 211 (448)
T PRK12331 156 FVKLAKEMQEMGADSICIKDMAGILTPY---VAYELVKRIKEAVT-VPLEVHTHATSGIA 211 (448)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCHH---HHHHHHHHHHHhcC-CeEEEEecCCCCcH
Confidence 111 0 14566655 44455666666775 44456788877653
No 109
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=50.40 E-value=1.1e+02 Score=32.39 Aligned_cols=93 Identities=20% Similarity=0.397 Sum_probs=59.8
Q ss_pred cHHH-HHHHHHcCCCceee-------cccccc-cccCC--CCCCC---------hhhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 117 YKED-VKLMADTGLDAYRF-------SISWSR-LIPNG--RGPVN---------PKGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 117 y~eD-i~l~~~lG~~~~R~-------sI~Wsr-i~P~g--~g~~n---------~~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
++.| ++++|+|.+...|+ ...|.. |-|.. +-..| +=| .+++++.+++.|.+|++.+.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G---t~EF~~~~e~iGaep~~avN 126 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG---THEFMDWCELIGAEPYIAVN 126 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc---HHHHHHHHHHhCCceEEEEe
Confidence 4566 68999999999996 235544 33331 11111 112 45899999999999999996
Q ss_pred CCCCcHhHHhhhCCCCChhhHHHHHHHHH--------HHHHHhCC----CceeEEEccCc
Q 046009 177 HYDLPQALEDEYGGWINQTIVQDFTAYAN--------VCFREFGD----RVSYWTTVNEP 224 (398)
Q Consensus 177 H~d~P~~l~~~~gGw~~~~~~~~F~~ya~--------~~~~~fgd----~V~~w~t~NEP 224 (398)
= |=...+....|.+||. ..=+..|- .||+|.+=||-
T Consensus 127 ~------------Gsrgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 127 L------------GSRGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred c------------CCccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 2 1133355667777763 23334443 49999999996
No 110
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=50.30 E-value=46 Score=33.86 Aligned_cols=105 Identities=16% Similarity=0.060 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCC--cHhHHhh------h
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDL--PQALEDE------Y 188 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~--P~~l~~~------~ 188 (398)
++|++.+.+.|++.+|+.++-|.+.-.- -+.--++.++...+.|+.++++|+++.++.-...- |..+.+- .
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 154 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEA 154 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHc
Confidence 8999999999999999999877542221 12223456888999999999999998887654321 2222110 1
Q ss_pred ----------CCCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchh
Q 046009 189 ----------GGWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNA 226 (398)
Q Consensus 189 ----------gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~ 226 (398)
-|-.. ++.+.++.+.+.++++ ..--+.+.|-..+
T Consensus 155 Ga~~i~l~DT~G~~~---P~~v~~lv~~l~~~~~-v~l~~H~HNd~Gl 198 (365)
T TIGR02660 155 GADRFRFADTVGILD---PFSTYELVRALRQAVD-LPLEMHAHNDLGM 198 (365)
T ss_pred CcCEEEEcccCCCCC---HHHHHHHHHHHHHhcC-CeEEEEecCCCCh
Confidence 12233 3455555566666664 2234567776654
No 111
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=49.87 E-value=4.2e+02 Score=29.77 Aligned_cols=151 Identities=19% Similarity=0.208 Sum_probs=86.9
Q ss_pred cccccCCCCCCChhhhHHHHHHHHHHHHC-CCeEEEEecCCCC-----cHhHHh----hhCCCC----------------
Q 046009 139 SRLIPNGRGPVNPKGLQYYNSLINELISH-GIQPHVTLHHYDL-----PQALED----EYGGWI---------------- 192 (398)
Q Consensus 139 sri~P~g~g~~n~~~~~~Y~~~i~~l~~~-GI~p~vtL~H~d~-----P~~l~~----~~gGw~---------------- 192 (398)
.++.|...|-++.+-++.++++.+.++++ |-+.++=|.|-+- +.|... ..+||.
T Consensus 459 g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p 538 (765)
T PRK08255 459 GRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVP 538 (765)
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCC
Confidence 45556556778999999999999999999 6999999998422 111100 002331
Q ss_pred -------ChhhHHHHHHHHHHHHHHhC-CCceeEEEccCchhhhhcccccCCC-CCCC--CCCCCCCCCCCCCCChhHHH
Q 046009 193 -------NQTIVQDFTAYANVCFREFG-DRVSYWTTVNEPNAFALLGYDIGIA-PPKR--CSPPFKNCRKGNSSTEPYMA 261 (398)
Q Consensus 193 -------~~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEP~~~~~~gy~~g~~-~Pg~--~~~~~~~~~~~~s~~~~~~a 261 (398)
-+++++.|++=|+.+.+ -| |-|. +.+-.||+...| -|-. +.+. .|.|
T Consensus 539 ~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgve---------ih~ahGyLl~qFlsp~~N~RtD~-----yGGs------- 596 (765)
T PRK08255 539 REMTRADMDRVRDDFVAAARRAAE-AGFDWLE---------LHCAHGYLLSSFISPLTNQRTDE-----YGGS------- 596 (765)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EecccchHHHHhcCCCCCCCCCC-----CCCC-------
Confidence 11367777776665544 34 3332 335668887654 3431 1111 1211
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcceEEEEeecCccccCCCCHHHH-HHHHHH
Q 046009 262 VHHVLLAHASVARLYRKNYQDKQHGYIGMSIFTYGLLPLTNSTEDA-IATQRY 313 (398)
Q Consensus 262 ~hnlllAHA~Av~~~r~~~~~~~~gkIGi~~~~~~~yP~s~~p~D~-~Aa~~~ 313 (398)
+-|-+.--.++++.+|+..+. +-.||+-++...+.+...+++|. ..++..
T Consensus 597 lenR~r~~~eiv~~ir~~~~~--~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l 647 (765)
T PRK08255 597 LENRLRYPLEVFRAVRAVWPA--EKPMSVRISAHDWVEGGNTPDDAVEIARAF 647 (765)
T ss_pred HHHHhHHHHHHHHHHHHhcCC--CCeeEEEEccccccCCCCCHHHHHHHHHHH
Confidence 334455556688888886532 34688888765544444455554 344443
No 112
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=49.16 E-value=53 Score=33.42 Aligned_cols=84 Identities=12% Similarity=0.021 Sum_probs=57.8
Q ss_pred cHHHHHHHHHcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHCCCeEEEEecC-CCCcHhHHhhhCCCCCh
Q 046009 117 YKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNSLINELISHGIQPHVTLHH-YDLPQALEDEYGGWINQ 194 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~Wsri~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H-~d~P~~l~~~~gGw~~~ 194 (398)
-++|++...+.|++.+.+.++=|...-.. -+.=-++.++.+.++|+.++++|+++.+++.. |..|. .|-.
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~-- 194 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPV-- 194 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCC--
Confidence 58999999999999999988665543221 23334578999999999999999999877753 44331 2222
Q ss_pred hhHHHHHHHHHHHHH
Q 046009 195 TIVQDFTAYANVCFR 209 (398)
Q Consensus 195 ~~~~~F~~ya~~~~~ 209 (398)
.++.+.++++.+.+
T Consensus 195 -~~~~l~~~~~~~~~ 208 (347)
T PLN02746 195 -PPSKVAYVAKELYD 208 (347)
T ss_pred -CHHHHHHHHHHHHH
Confidence 24555555655544
No 113
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=48.41 E-value=30 Score=41.05 Aligned_cols=63 Identities=17% Similarity=0.259 Sum_probs=40.2
Q ss_pred ccCcH--HHHHHHHHcCCCceeecccccccc-----cCC-----------CCCCCh--h--hhHHHHHHHHHHHHCCCeE
Q 046009 114 YHKYK--EDVKLMADTGLDAYRFSISWSRLI-----PNG-----------RGPVNP--K--GLQYYNSLINELISHGIQP 171 (398)
Q Consensus 114 y~~y~--eDi~l~~~lG~~~~R~sI~Wsri~-----P~g-----------~g~~n~--~--~~~~Y~~~i~~l~~~GI~p 171 (398)
|.... +.|+.+|+||++++=+.=-..... +.| --.+|+ . ..+=+++||++|+++||++
T Consensus 184 ~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~V 263 (1221)
T PRK14510 184 FAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAV 263 (1221)
T ss_pred HhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEE
Confidence 44444 668899999999987643221110 000 001121 1 4567899999999999999
Q ss_pred EEEec
Q 046009 172 HVTLH 176 (398)
Q Consensus 172 ~vtL~ 176 (398)
|++.-
T Consensus 264 ILDvV 268 (1221)
T PRK14510 264 ILDVV 268 (1221)
T ss_pred EEEEc
Confidence 99843
No 114
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=47.97 E-value=30 Score=33.61 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=45.3
Q ss_pred HHHHHHHHHcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
.+|++.+.+.|++.+|+.++=|...-.. .+.=-++.++...+++..+++.|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 6799999999999999988654432111 1222246688999999999999999999885
No 115
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=47.73 E-value=85 Score=32.38 Aligned_cols=51 Identities=12% Similarity=0.310 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
.|++||++++++|++.|=+.|- . ..... .+....++++..+.|.+.++.+.
T Consensus 18 dw~~di~~A~~~GIDgFaLNig------~-~d~~~---~~~l~~a~~AA~~~gFKlf~SfD 68 (386)
T PF03659_consen 18 DWEADIRLAQAAGIDGFALNIG------S-SDSWQ---PDQLADAYQAAEAVGFKLFFSFD 68 (386)
T ss_pred HHHHHHHHHHHcCCCEEEEecc------c-CCccc---HHHHHHHHHHHHhcCCEEEEEec
Confidence 5899999999999999999886 1 12333 34677888999999988888874
No 116
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=47.61 E-value=2e+02 Score=27.67 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=37.8
Q ss_pred HHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
.+|++...+.|++.+|+..+.+.+ +-..+.++.+++.|+++.+++-
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~-------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA-------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH-------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999988766643 2356788999999999988883
No 117
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=47.20 E-value=64 Score=32.54 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=36.2
Q ss_pred HHHHHHcCCCceeecccccc---cccCCCCCCCh----hhhHHHHHHHHHHHHCCCeEEEEecCCC
Q 046009 121 VKLMADTGLDAYRFSISWSR---LIPNGRGPVNP----KGLQYYNSLINELISHGIQPHVTLHHYD 179 (398)
Q Consensus 121 i~l~~~lG~~~~R~sI~Wsr---i~P~g~g~~n~----~~~~~Y~~~i~~l~~~GI~p~vtL~H~d 179 (398)
++++|++|++.+=+.-.-.. +.|+.-..+|- -.-+...++.++|+++||++.+-++++|
T Consensus 97 ~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S~~d 162 (346)
T PF01120_consen 97 AKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYSPWD 162 (346)
T ss_dssp HHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEESSS
T ss_pred HHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEecchH
Confidence 79999999998776321111 22221112221 1356888999999999999999888765
No 118
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=46.89 E-value=54 Score=35.13 Aligned_cols=61 Identities=13% Similarity=0.286 Sum_probs=39.3
Q ss_pred CcHHHHHHHHHcCCCceeecccccccc-cCC-----CCCCChh--hhHHHHHHHHHHHHCCCeEEEEec
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLI-PNG-----RGPVNPK--GLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~-P~g-----~g~~n~~--~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
-..+-++.+++||++++=++--...-. ..| --.+|+. ..+-++++|++++++||++|+++-
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 345668899999999987653221100 000 0022332 345689999999999999999843
No 119
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=46.78 E-value=33 Score=34.70 Aligned_cols=110 Identities=19% Similarity=0.465 Sum_probs=58.3
Q ss_pred ccCcHHHHHHHHHcCCCcee---------------ec---------------ccccccccC-C-CCCCCh----hhhHHH
Q 046009 114 YHKYKEDVKLMADTGLDAYR---------------FS---------------ISWSRLIPN-G-RGPVNP----KGLQYY 157 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R---------------~s---------------I~Wsri~P~-g-~g~~n~----~~~~~Y 157 (398)
|.||++.|+.|+=-|+|..= ++ ..|.|..-- | .|++.. +-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 56788888888888888321 11 245554211 1 133322 234455
Q ss_pred HHHHHHHHHCCCeEEEEecCCCCcHhHHhhh--------CCC--------CChhhHHHHHHHHH----HHHHHhCCCcee
Q 046009 158 NSLINELISHGIQPHVTLHHYDLPQALEDEY--------GGW--------INQTIVQDFTAYAN----VCFREFGDRVSY 217 (398)
Q Consensus 158 ~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~--------gGw--------~~~~~~~~F~~ya~----~~~~~fgd~V~~ 217 (398)
+++++++++-||+|++--+---+|..+.+++ |.| +.|. -+.|.+.++ .-.+.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~-dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPT-DPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS---HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCC-CchHHHHHHHHHHHHHHhcC-CCce
Confidence 7899999999999999988777899988776 223 2332 245666555 4466788 4445
Q ss_pred E--EEccCch
Q 046009 218 W--TTVNEPN 225 (398)
Q Consensus 218 w--~t~NEP~ 225 (398)
+ -+|||-.
T Consensus 176 Y~~D~FnE~~ 185 (333)
T PF05089_consen 176 YAADPFNEGG 185 (333)
T ss_dssp EE--TTTTS-
T ss_pred eCCCccCCCC
Confidence 5 3888854
No 120
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=46.52 E-value=77 Score=33.19 Aligned_cols=106 Identities=14% Similarity=0.149 Sum_probs=65.8
Q ss_pred cHHHHHHHHHcCCCceeecc-cccc-cccCCCCCCChhhhHHHHHHHHHHHHCC-CeEEEEecCCCCcHhHHhhhCCCCC
Q 046009 117 YKEDVKLMADTGLDAYRFSI-SWSR-LIPNGRGPVNPKGLQYYNSLINELISHG-IQPHVTLHHYDLPQALEDEYGGWIN 193 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI-~Wsr-i~P~g~g~~n~~~~~~Y~~~i~~l~~~G-I~p~vtL~H~d~P~~l~~~~gGw~~ 193 (398)
-+|.+++|+++|+|-+-+++ +-+. +... -|+.. ..+-..+.|+.+++.| +.+.++|. +++|. .
T Consensus 162 t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~-lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------q- 227 (449)
T PRK09058 162 DDEKADAALDAGANRFSIGVQSFNTQVRRR-AGRKD--DREEVLARLEELVARDRAAVVCDLI-FGLPG---------Q- 227 (449)
T ss_pred CHHHHHHHHHcCCCEEEecCCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------C-
Confidence 36889999999999777777 3322 2222 12222 1345668899999999 66777775 56662 1
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEEEccCchhhhhcccccCCCC
Q 046009 194 QTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAFALLGYDIGIAP 238 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~g~~~ 238 (398)
+.+.|.+=.+.+.+-=-+.|..+...-||+..-..-+..|.++
T Consensus 228 --T~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 228 --TPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 2344444455554433477888888889987544444445554
No 121
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=46.10 E-value=73 Score=34.76 Aligned_cols=93 Identities=15% Similarity=0.173 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCc----HhHHhh------
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLP----QALEDE------ 187 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P----~~l~~~------ 187 (398)
++|++.+.+.|++.+|+..+.+.+ +-....++..+++|++..+++.+-+-| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~ 160 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLE 160 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 445899999999999998766543 235677788888888888877655555 221110
Q ss_pred ----------hCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 188 ----------YGGWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 188 ----------~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
-.|...|. ...+..+.+-++++ ..-...+.|-..+.
T Consensus 161 ~Gad~I~i~Dt~G~~~P~---~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla 206 (582)
T TIGR01108 161 MGVDSICIKDMAGILTPK---AAYELVSALKKRFG-LPVHLHSHATTGMA 206 (582)
T ss_pred cCCCEEEECCCCCCcCHH---HHHHHHHHHHHhCC-CceEEEecCCCCcH
Confidence 03555554 45555666667775 33457788887664
No 122
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=45.04 E-value=1.7e+02 Score=28.47 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCCceeecccccccccC-CCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCC
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNSLINELISHGIQPHVTLHHY 178 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~-g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~ 178 (398)
+.+++.+++.|++.+|+.++=|...-. ..|.--++.++...+.++.+++.|+++.++.-+|
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~ 142 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF 142 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec
Confidence 368999999999999998765433211 1222235678899999999999999998866555
No 123
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=44.93 E-value=3.5e+02 Score=27.49 Aligned_cols=193 Identities=17% Similarity=0.151 Sum_probs=104.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcH----------hHH-----hh--------------hCCC----C
Q 046009 146 RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQ----------ALE-----DE--------------YGGW----I 192 (398)
Q Consensus 146 ~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~----------~l~-----~~--------------~gGw----~ 192 (398)
.+-+|.+-+.-++++.++++++|-+.++=|+|-+--. .+. .. ..+- .
T Consensus 70 ~~l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~m 149 (362)
T PRK10605 70 PGLHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRAL 149 (362)
T ss_pred CcccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccC
Confidence 4567888899999999999999999999999953210 000 00 0000 0
Q ss_pred ----ChhhHHHHHHHHHHHHHHhC-CCceeEEEccCchhhhhcccccCCC-CCCCCCCCCCCCCCCCCCChhHHHHHHHH
Q 046009 193 ----NQTIVQDFTAYANVCFREFG-DRVSYWTTVNEPNAFALLGYDIGIA-PPKRCSPPFKNCRKGNSSTEPYMAVHHVL 266 (398)
Q Consensus 193 ----~~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEP~~~~~~gy~~g~~-~Pg~~~~~~~~~~~~~s~~~~~~a~hnll 266 (398)
=+++++.|++=|+.+.+ -| |-|. +.+-.||+...| -|..... +...|.| +-|-+
T Consensus 150 t~~eI~~ii~~f~~AA~rA~~-AGfDGVE---------Ih~ahGyLl~qFLSp~~N~R---tDeYGGs-------lENR~ 209 (362)
T PRK10605 150 ELEEIPGIVNDFRQAIANARE-AGFDLVE---------LHSAHGYLLHQFLSPSSNQR---TDQYGGS-------VENRA 209 (362)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EcccccchHHHhcCCcCCCC---CCcCCCc-------HHHHH
Confidence 03577788876655554 33 4442 456678887755 4432110 1111222 34555
Q ss_pred HHHHHHHHHHHHhcCCCCcceEEEEeecCcc---ccCCCCHHH--HHHHHHHhhccccccccceecc------cCCchhH
Q 046009 267 LAHASVARLYRKNYQDKQHGYIGMSIFTYGL---LPLTNSTED--AIATQRYNDFLVGWIANPLVYG------DYPNIMK 335 (398)
Q Consensus 267 lAHA~Av~~~r~~~~~~~~gkIGi~~~~~~~---yP~s~~p~D--~~Aa~~~~~~~~~~flDp~~~G------~YP~~~~ 335 (398)
+=--.+++.+|+..+. + .||+-++.... .+...+++| +..++...+.-. -+++.- .| .|+..+.
T Consensus 210 Rf~~Eiv~aVr~~vg~--~-~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~gi-D~i~vs-~~~~~~~~~~~~~~~ 284 (362)
T PRK10605 210 RLVLEVVDAGIAEWGA--D-RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGI-AYLHMS-EPDWAGGEPYSDAFR 284 (362)
T ss_pred HHHHHHHHHHHHHcCC--C-eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCC-CEEEec-cccccCCccccHHHH
Confidence 5567788888887642 2 48887765421 122234444 444444332101 123322 12 2333333
Q ss_pred HhhccC--CC-----CCCHhHHHHh--cCCCcEEEEe
Q 046009 336 KNVGSR--LP-----LFTYLESKQV--KGSADFLGVN 363 (398)
Q Consensus 336 ~~l~~~--lp-----~~t~eD~e~i--kgt~DFiGiN 363 (398)
+.+++. .| .+++++.+.+ .|.+|++|+-
T Consensus 285 ~~ik~~~~~pv~~~G~~~~~~ae~~i~~G~~D~V~~g 321 (362)
T PRK10605 285 EKVRARFHGVIIGAGAYTAEKAETLIGKGLIDAVAFG 321 (362)
T ss_pred HHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCCEEEEC
Confidence 334432 12 3577776655 4779999985
No 124
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=44.71 E-value=42 Score=37.71 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=56.1
Q ss_pred HHHHHHHcCCCceeeccccccc-------ccCCCCCCCh--hhhHHHHHHHHHHHHCCCeEEEEecC--CCC--------
Q 046009 120 DVKLMADTGLDAYRFSISWSRL-------IPNGRGPVNP--KGLQYYNSLINELISHGIQPHVTLHH--YDL-------- 180 (398)
Q Consensus 120 Di~l~~~lG~~~~R~sI~Wsri-------~P~g~g~~n~--~~~~~Y~~~i~~l~~~GI~p~vtL~H--~d~-------- 180 (398)
-++.+++||++++-+.--...- .|..--.++. ...+-++++|++|+++||++++++-+ ..-
T Consensus 256 ~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~ 335 (758)
T PLN02447 256 VLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNG 335 (758)
T ss_pred HHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccccccccccc
Confidence 3899999999999875432211 0010000111 12345889999999999999999653 211
Q ss_pred -----cHhHHhhhCC----C-------CChhhHHHHHHHHHHHHHHhC
Q 046009 181 -----PQALEDEYGG----W-------INQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 181 -----P~~l~~~~gG----w-------~~~~~~~~F~~ya~~~~~~fg 212 (398)
+.|+.....| | .++++.+...+=++.-+++|+
T Consensus 336 fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 336 FDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1222211012 2 256777888888888888876
No 125
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=44.41 E-value=28 Score=35.98 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=38.7
Q ss_pred HHHHHHHHcCCCceeecc------cccccccCCCCCCC--hhhhHHHHHHHHHHHHCCCeEEEEe--cCC
Q 046009 119 EDVKLMADTGLDAYRFSI------SWSRLIPNGRGPVN--PKGLQYYNSLINELISHGIQPHVTL--HHY 178 (398)
Q Consensus 119 eDi~l~~~lG~~~~R~sI------~Wsri~P~g~g~~n--~~~~~~Y~~~i~~l~~~GI~p~vtL--~H~ 178 (398)
+-++.+++||++++=++= ++.+--..---.+| ...++-.++++++++++||+.++++ .|-
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~ 102 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHT 102 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 567889999999884432 11111111001122 2346678899999999999999998 553
No 126
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=44.39 E-value=79 Score=31.90 Aligned_cols=89 Identities=17% Similarity=0.268 Sum_probs=62.5
Q ss_pred HHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHH
Q 046009 121 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDF 200 (398)
Q Consensus 121 i~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F 200 (398)
.+.++++|.++..+=+=|. |+++..+|..-.++.+++.++|+++||--++-+-.+|.+. .+. + +.+....-
T Consensus 112 ~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~--~~~-~---~~~yak~k 182 (325)
T TIGR01232 112 AKRLKEQGANAVKFLLYYD---VDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI--PDN-G---SVEFAKVK 182 (325)
T ss_pred HHHHHHhCCCeEEEEEEeC---CCCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC--CCC-C---cHHHHHhC
Confidence 6889999999999988664 4555678888899999999999999999999988776543 122 1 22222222
Q ss_pred HHHHHHHHHHhCC---CceeE
Q 046009 201 TAYANVCFREFGD---RVSYW 218 (398)
Q Consensus 201 ~~ya~~~~~~fgd---~V~~w 218 (398)
-+.+-..++.|++ .|+.|
T Consensus 183 P~~V~~a~kefs~~~~gvDVl 203 (325)
T TIGR01232 183 PRKVNEAMKLFSEPRFNVDVL 203 (325)
T ss_pred hHHHHHHHHHhccCCCCCcEE
Confidence 3334455667766 46666
No 127
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=43.80 E-value=3.7e+02 Score=27.39 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=75.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCC-------------cHhHHhhh--CC------CC---ChhhHHHHH
Q 046009 146 RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDL-------------PQALEDEY--GG------WI---NQTIVQDFT 201 (398)
Q Consensus 146 ~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~-------------P~~l~~~~--gG------w~---~~~~~~~F~ 201 (398)
.|-++++-+.-++++.+.++++|-+.++=|+|-.- |..+.... +. -+ =+++++.|+
T Consensus 74 ~~l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 153 (370)
T cd02929 74 ARLWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYV 153 (370)
T ss_pred cCcCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHH
Confidence 46778889999999999999999999999999542 00000000 00 01 124677888
Q ss_pred HHHHHHHHHhCCCceeEEEccCchhhhhcccccCCC-CCC--CCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 046009 202 AYANVCFREFGDRVSYWTTVNEPNAFALLGYDIGIA-PPK--RCSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRK 278 (398)
Q Consensus 202 ~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~g~~-~Pg--~~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~ 278 (398)
+=|+.+.+.==|-|. +.+-.||+...| .|. .+.+. .|.| +-|-+.--..+++.+|+
T Consensus 154 ~AA~ra~~aGfDgVE---------ih~ahGyLl~QFlSp~~N~RtD~-----yGGs-------lenR~Rf~~eii~aIr~ 212 (370)
T cd02929 154 DAALRARDAGFDIVY---------VYAAHGYLPLQFLLPRYNKRTDE-----YGGS-------LENRARFWRETLEDTKD 212 (370)
T ss_pred HHHHHHHHcCCCEEE---------EcccccchHHHhhCccccCCccc-----cCCC-------hHhhhHHHHHHHHHHHH
Confidence 766655443113332 345568887654 332 11111 1222 33444445677888888
Q ss_pred hcCCCCcceEEEEeecCcccc
Q 046009 279 NYQDKQHGYIGMSIFTYGLLP 299 (398)
Q Consensus 279 ~~~~~~~gkIGi~~~~~~~yP 299 (398)
..+. +-.||+-++.....|
T Consensus 213 ~vg~--~~~v~vRls~~~~~~ 231 (370)
T cd02929 213 AVGD--DCAVATRFSVDELIG 231 (370)
T ss_pred HcCC--CceEEEEecHHHhcC
Confidence 6532 346888777655444
No 128
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=43.80 E-value=2e+02 Score=28.99 Aligned_cols=94 Identities=15% Similarity=0.148 Sum_probs=61.2
Q ss_pred cHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEe--cCCCCcHhHHhh------h
Q 046009 117 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTL--HHYDLPQALEDE------Y 188 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL--~H~d~P~~l~~~------~ 188 (398)
..+|++...+.|++.+|+....+.. +-..+.|+.+++.|++..+.+ .|...|..+.+. +
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~ 155 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESY 155 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhc
Confidence 3689999999999999988754432 135688999999999988777 344445544321 1
Q ss_pred ----------CCCCChhhHHHHHHHHHHHHHHhCCCc-eeEEEccCchh
Q 046009 189 ----------GGWINQTIVQDFTAYANVCFREFGDRV-SYWTTVNEPNA 226 (398)
Q Consensus 189 ----------gGw~~~~~~~~F~~ya~~~~~~fgd~V-~~w~t~NEP~~ 226 (398)
.|-.. ++...++.+.+-+++++.+ --+...|-..+
T Consensus 156 Ga~~i~i~DT~G~~~---P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGl 201 (333)
T TIGR03217 156 GADCVYIVDSAGAML---PDDVRDRVRALKAVLKPETQVGFHAHHNLSL 201 (333)
T ss_pred CCCEEEEccCCCCCC---HHHHHHHHHHHHHhCCCCceEEEEeCCCCch
Confidence 23334 4456666666667776433 23456665544
No 129
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.79 E-value=1.6e+02 Score=29.27 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=47.2
Q ss_pred CChhhhHHHHHHHHHHHHCCCeEEEEecCCC---CcHhHHhh---h------C----------------CCCChhhHHHH
Q 046009 149 VNPKGLQYYNSLINELISHGIQPHVTLHHYD---LPQALEDE---Y------G----------------GWINQTIVQDF 200 (398)
Q Consensus 149 ~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d---~P~~l~~~---~------g----------------Gw~~~~~~~~F 200 (398)
+|.+.+.-.++||++|++.|++.++.++-+- .|..-+.+ | | .++||+..+.|
T Consensus 67 ~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww 146 (317)
T cd06599 67 WNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWW 146 (317)
T ss_pred cCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHH
Confidence 3433334456899999999999888766432 22211100 0 0 14688888888
Q ss_pred HHHHHHHHHHhCCCceeEEEccCchh
Q 046009 201 TAYANVCFREFGDRVSYWTTVNEPNA 226 (398)
Q Consensus 201 ~~ya~~~~~~fgd~V~~w~t~NEP~~ 226 (398)
.+..+......|= .-+|+=+|||.+
T Consensus 147 ~~~~~~~~~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 147 KEGVKEALLDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred HHHHHHHHhcCCC-cEEEecCCCCcc
Confidence 8777655555442 346788999974
No 130
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=43.72 E-value=70 Score=30.89 Aligned_cols=77 Identities=13% Similarity=0.082 Sum_probs=51.9
Q ss_pred HHHHHHHHHcC----CCceeeccccccc--ccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCC
Q 046009 118 KEDVKLMADTG----LDAYRFSISWSRL--IPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGW 191 (398)
Q Consensus 118 ~eDi~l~~~lG----~~~~R~sI~Wsri--~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw 191 (398)
.+|++...+.| ++.+|+.++.+.+ +-+ -+.=-++.++...+.++.+++.|++..++..+ .+.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~-----------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYK-LKKTREEVLERAVEAVEYAKSHGLDVEFSAED-----------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCeEEEeeec-----------CCC
Confidence 78999999999 9999997765544 322 12222345788889999999999987755432 222
Q ss_pred CChhhHHHHHHHHHHHHH
Q 046009 192 INQTIVQDFTAYANVCFR 209 (398)
Q Consensus 192 ~~~~~~~~F~~ya~~~~~ 209 (398)
. ..+.+.+.++.+.+
T Consensus 140 ~---~~~~~~~~~~~~~~ 154 (268)
T cd07940 140 T---DLDFLIEVVEAAIE 154 (268)
T ss_pred C---CHHHHHHHHHHHHH
Confidence 2 25566666666643
No 131
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=43.62 E-value=73 Score=32.40 Aligned_cols=93 Identities=16% Similarity=0.224 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCceeecccccccccCC---CCCCChhhhHHHHHHHHHHHHCCCe-EEEEecCCCCcHhHHhhhCCCCC
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNSLINELISHGIQ-PHVTLHHYDLPQALEDEYGGWIN 193 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g---~g~~n~~~~~~Y~~~i~~l~~~GI~-p~vtL~H~d~P~~l~~~~gGw~~ 193 (398)
++.++.|+++|++.+-+++ .-+.++- -|... ..+-..+.++.+++.|+. .-++|- +++|.
T Consensus 103 ~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg----------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT----------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 6889999999998555554 2222221 12211 134566788999999997 445654 55552
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 194 QTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
++.+.|.+=.+.+.+.=-++|..+...-||...
T Consensus 167 -qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 -QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred -CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 235667777777665434788888888888854
No 132
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=43.10 E-value=68 Score=30.56 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=44.9
Q ss_pred ecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 046009 134 FSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 134 ~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fg 212 (398)
+.+.|..+.++|.-.... .....+.+++.++++|++.++.+..++...... -..+++..+.|++=+-..++++|
T Consensus 26 v~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 26 INLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 444566666554212211 123567889999999999999997665432111 12466667777666666666665
No 133
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=42.73 E-value=73 Score=32.59 Aligned_cols=106 Identities=14% Similarity=0.038 Sum_probs=69.0
Q ss_pred HHHHHHHHHcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCC--CcHhHHhh------h
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYD--LPQALEDE------Y 188 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d--~P~~l~~~------~ 188 (398)
++|++.+.+.|++.+|+.++-|.+.-.- -+.--++.++...+.++.+++.|+++.++.-... -|..+.+- .
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~ 157 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEA 157 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhC
Confidence 7899999999999999999776653221 2222356788899999999999999998864321 12222211 1
Q ss_pred ----------CCCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 189 ----------GGWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 189 ----------gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
.|-.. ++.+.++.+.+.+++ +..--+...|-..+.
T Consensus 158 Ga~~I~l~DT~G~~~---P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA 202 (378)
T PRK11858 158 GADRVRFCDTVGILD---PFTMYELVKELVEAV-DIPIEVHCHNDFGMA 202 (378)
T ss_pred CCCEEEEeccCCCCC---HHHHHHHHHHHHHhc-CCeEEEEecCCcCHH
Confidence 23344 345556666666666 434456778877654
No 134
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=42.53 E-value=83 Score=30.70 Aligned_cols=84 Identities=12% Similarity=0.142 Sum_probs=59.3
Q ss_pred cHHHHHHHHHcCCCceeecccccccccC-CCCCCChhhhHHHHHHHHHHHHCCCeEEEEec-CCCCcHhHHhhhCCCCCh
Q 046009 117 YKEDVKLMADTGLDAYRFSISWSRLIPN-GRGPVNPKGLQYYNSLINELISHGIQPHVTLH-HYDLPQALEDEYGGWINQ 194 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~Wsri~P~-g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~-H~d~P~~l~~~~gGw~~~ 194 (398)
-++|++...+.|++.+++.++=|...-. .-+.--++.++...+.++.++++|+++.+++. .|+.| ++|-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~------~~~~~-- 146 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP------YEGEV-- 146 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC------CCCCC--
Confidence 3789999999999999998865543211 01222356788999999999999999988876 35544 13333
Q ss_pred hhHHHHHHHHHHHHH
Q 046009 195 TIVQDFTAYANVCFR 209 (398)
Q Consensus 195 ~~~~~F~~ya~~~~~ 209 (398)
..+.+.++++.+.+
T Consensus 147 -~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 -PPERVAEVAERLLD 160 (274)
T ss_pred -CHHHHHHHHHHHHH
Confidence 35677777777654
No 135
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=42.33 E-value=1.2e+02 Score=32.75 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCceeeccc-c-cccccC-CCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCCh
Q 046009 118 KEDVKLMADTGLDAYRFSIS-W-SRLIPN-GRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQ 194 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~-W-sri~P~-g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~ 194 (398)
+|.+++|+++|++.+-++++ - .+++.. ++| . ..+-..+.++.+++.|++..+.|- +++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg-h---t~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg------------ 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRG-H---TVRDVVEATRLLRDAGLKVVYHIM-PGLPG------------ 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC-C---CHHHHHHHHHHHHHcCCeEEEEee-cCCCC------------
Confidence 68899999999987777662 1 222222 222 1 244566788899999998776664 56652
Q ss_pred hhHHHHHHHHHHHHH--HhC-CCceeEEEccCchhhhhcccccCCCCC
Q 046009 195 TIVQDFTAYANVCFR--EFG-DRVSYWTTVNEPNAFALLGYDIGIAPP 239 (398)
Q Consensus 195 ~~~~~F~~ya~~~~~--~fg-d~V~~w~t~NEP~~~~~~gy~~g~~~P 239 (398)
++.+.+.+=++.+++ .++ |.|+.+-+.=+|+.....-|..|.+.|
T Consensus 269 qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p 316 (522)
T TIGR01211 269 SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKP 316 (522)
T ss_pred CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCC
Confidence 124455555566665 354 677777766666655444455555544
No 136
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=41.47 E-value=82 Score=33.03 Aligned_cols=75 Identities=20% Similarity=0.331 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCCceeecc-cccc-cccC-CCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCCh
Q 046009 118 KEDVKLMADTGLDAYRFSI-SWSR-LIPN-GRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQ 194 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI-~Wsr-i~P~-g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~ 194 (398)
+|.+++|+++|++.+-+++ +-+. +... +++ .+ .+.+.+.++.++++||.+.+++- +++|. .++
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~-~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlPg---------et~ 352 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKG-LT---VEIARRFTRDCHKLGIKVHGTFI-LGLPG---------ETR 352 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCC-CC---HHHHHHHHHHHHHCCCeEEEEEE-EeCCC---------CCH
Confidence 6778999999999888888 3322 2211 122 23 45678999999999999887775 34442 344
Q ss_pred hhHHHHHHHHHH
Q 046009 195 TIVQDFTAYANV 206 (398)
Q Consensus 195 ~~~~~F~~ya~~ 206 (398)
+.++.-.+|+..
T Consensus 353 e~~~~ti~~~~~ 364 (472)
T TIGR03471 353 ETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHHHHHh
Confidence 444554555443
No 137
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=40.88 E-value=1.1e+02 Score=31.27 Aligned_cols=69 Identities=19% Similarity=0.265 Sum_probs=49.4
Q ss_pred HHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHH
Q 046009 121 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDF 200 (398)
Q Consensus 121 i~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F 200 (398)
|+.|++.|++-+=.|+ +.|++ -+...++.++++++.+.+.|++++|+.. |+-|.. -||. .+.++.|
T Consensus 22 i~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S-~~~l~~f 87 (360)
T COG3589 22 IDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNIS-LDNLSRF 87 (360)
T ss_pred HHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCC-hHHHHHH
Confidence 6788888988776665 34443 2335789999999999999999999995 887754 3543 3335555
Q ss_pred HHH
Q 046009 201 TAY 203 (398)
Q Consensus 201 ~~y 203 (398)
.+.
T Consensus 88 ~e~ 90 (360)
T COG3589 88 QEL 90 (360)
T ss_pred HHh
Confidence 554
No 138
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=40.68 E-value=88 Score=30.71 Aligned_cols=84 Identities=11% Similarity=0.120 Sum_probs=56.4
Q ss_pred HHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCC----cHhHHhhhCCCCChhh
Q 046009 121 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDL----PQALEDEYGGWINQTI 196 (398)
Q Consensus 121 i~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~----P~~l~~~~gGw~~~~~ 196 (398)
.+.+++-+-+.--++..|-+|.|+| .+... ...++++.++++|+++++++..++- +.-+.. --.+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g--~~~~~---~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG--TLTGL---PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC--CCCCC---CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHHH
Confidence 6777887778888899999998875 33322 2468999999999999999976541 111110 1235556
Q ss_pred HHHHHHHHHHHHHHhC
Q 046009 197 VQDFTAYANVCFREFG 212 (398)
Q Consensus 197 ~~~F~~ya~~~~~~fg 212 (398)
.+.|++=+-..++++|
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6667666666666665
No 139
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=39.94 E-value=83 Score=31.69 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCceeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHCCCeEE-EEecCCCCcHhHHhhhCCCCCh
Q 046009 118 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNSLINELISHGIQPH-VTLHHYDLPQALEDEYGGWINQ 194 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI-~Ws-ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~~gGw~~~ 194 (398)
+|.++.++++|++-+-+++ +-+ ++... -|+.. ..+-..+.++.+++.|+..+ ++|- +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~-lgR~~--~~~~~~~ai~~lr~~g~~~v~iDli-~GlPg------------ 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKF-LGRIH--SQKQIIKAIENAKKAGFENISIDLI-YDTPL------------ 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCC--CHHHHHHHHHHHHHcCCCEEEEEee-cCCCC------------
Confidence 6889999999999666666 332 22222 23321 24567789999999999865 6664 56663
Q ss_pred hhHHHHHHHHHHHHHHhCCCceeEEEccCchh
Q 046009 195 TIVQDFTAYANVCFREFGDRVSYWTTVNEPNA 226 (398)
Q Consensus 195 ~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~ 226 (398)
++.+.|.+-.+.+.+-=-++|..+...=||+.
T Consensus 162 qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT 193 (350)
T PRK08446 162 DNKKLLKEELKLAKELPINHLSAYSLTIEENT 193 (350)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEeccceecCCC
Confidence 22455555555555433355665554445554
No 140
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=39.94 E-value=66 Score=30.32 Aligned_cols=65 Identities=11% Similarity=0.119 Sum_probs=41.4
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCC--CCCCChhhhHHHHHHHHHHHHCCCeEEEEe-cCCCCc
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNG--RGPVNPKGLQYYNSLINELISHGIQPHVTL-HHYDLP 181 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g--~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL-~H~d~P 181 (398)
-+.+++=+++++++|.+.+|+-..+. |.. ..+.....++..+++.+.+.+.||...+=. ++++.|
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 34566778999999999988643321 111 011123345667888888999999887754 444444
No 141
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=39.91 E-value=67 Score=35.72 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=36.3
Q ss_pred HHHHHHcCCCceeeccccccc----------------ccCCCCCCChh-----hhHHHHHHHHHHHHCCCeEEEEec
Q 046009 121 VKLMADTGLDAYRFSISWSRL----------------IPNGRGPVNPK-----GLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 121 i~l~~~lG~~~~R~sI~Wsri----------------~P~g~g~~n~~-----~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
|+.+|+||++++=+.--=.-. .|..--.++.. .++-+++||++|+++||++|+.+-
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 789999999998764321100 01000011211 255699999999999999999954
No 142
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=39.42 E-value=95 Score=31.48 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=60.3
Q ss_pred cHHHHHHHHHcCCCceeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHCCCe-EEEEecCCCCcHhHHhhhCCCCC
Q 046009 117 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNSLINELISHGIQ-PHVTLHHYDLPQALEDEYGGWIN 193 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI-~Ws-ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~-p~vtL~H~d~P~~l~~~~gGw~~ 193 (398)
-+|.+++|+++|++.+-+++ +-+ ++... -|.. ...+-..+.++.+++.|+. +.++|- +++|. .
T Consensus 107 ~~e~l~~l~~~G~~rvslGvQS~~~~~L~~-l~R~--~s~~~~~~a~~~l~~~g~~~v~~dli-~GlPg---------q- 172 (375)
T PRK05628 107 SPEFFAALRAAGFTRVSLGMQSAAPHVLAV-LDRT--HTPGRAVAAAREARAAGFEHVNLDLI-YGTPG---------E- 172 (375)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCC--CCHHHHHHHHHHHHHcCCCcEEEEEe-ccCCC---------C-
Confidence 46889999999998666666 222 12211 1211 1244577889999999998 656654 45552 1
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEEEccCchhhhhcccccCCC
Q 046009 194 QTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAFALLGYDIGIA 237 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~g~~ 237 (398)
+.+.|.+=.+.+.+.=-+.+..+...-||+.....-+..|.+
T Consensus 173 --t~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~~~~~~g~~ 214 (375)
T PRK05628 173 --SDDDWRASLDAALEAGVDHVSAYALIVEDGTALARRVRRGEL 214 (375)
T ss_pred --CHHHHHHHHHHHHhcCCCEEEeeeeecCCCChHHHHhhcCCC
Confidence 234555545544443235666665555777654433433433
No 143
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=39.26 E-value=34 Score=32.27 Aligned_cols=52 Identities=15% Similarity=0.436 Sum_probs=31.1
Q ss_pred cccCcHHHHHHHHHcCCCceee----------------------cccccccccCCCCCCChhhhHHHHHHHHHHHHCCCe
Q 046009 113 GYHKYKEDVKLMADTGLDAYRF----------------------SISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQ 170 (398)
Q Consensus 113 ~y~~y~eDi~l~~~lG~~~~R~----------------------sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~ 170 (398)
-.-.-+.-++++++||.+++.| ++. +||. |-+| ++-+.+++..++++|++
T Consensus 133 ~~V~vetAiaml~dmG~~SiKffPm~Gl~~leE~~avAkA~a~~g~~---lEPT--GGId---l~N~~~I~~i~l~aGv~ 204 (218)
T PF07071_consen 133 AIVPVETAIAMLKDMGGSSIKFFPMGGLKHLEELKAVAKACARNGFT---LEPT--GGID---LDNFEEIVKICLDAGVE 204 (218)
T ss_dssp -EEEHHHHHHHHHHTT--EEEE---TTTTTHHHHHHHHHHHHHCT-E---EEEB--SS-----TTTHHHHHHHHHHTT-S
T ss_pred ccccHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCce---eCCc--CCcC---HHHHHHHHHHHHHcCCC
Confidence 3445678899999999999886 221 3666 4455 45667777777777776
Q ss_pred EE
Q 046009 171 PH 172 (398)
Q Consensus 171 p~ 172 (398)
-+
T Consensus 205 ~v 206 (218)
T PF07071_consen 205 KV 206 (218)
T ss_dssp -B
T ss_pred ee
Confidence 54
No 144
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=38.93 E-value=96 Score=30.65 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=50.8
Q ss_pred hHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhhhhcccc
Q 046009 154 LQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAFALLGYD 233 (398)
Q Consensus 154 ~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~ 233 (398)
.+-+.+.++.++++||++.+++. +++|. ++.+.+.+=++.+.+-=-+.|+.....-+|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 45677899999999999877664 45552 234666666666655444778888888888876665566
Q ss_pred cCCCCC
Q 046009 234 IGIAPP 239 (398)
Q Consensus 234 ~g~~~P 239 (398)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 666544
No 145
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=38.58 E-value=1.4e+02 Score=30.27 Aligned_cols=97 Identities=18% Similarity=0.263 Sum_probs=56.0
Q ss_pred cHHHHHHHHHcCCCceeeccc-c-cccccCCCCCCChhhhHHHHHHHHHHHHCCCeEE-EEecCCCCcHhHHhhhCCCCC
Q 046009 117 YKEDVKLMADTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNSLINELISHGIQPH-VTLHHYDLPQALEDEYGGWIN 193 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~-W-sri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~~gGw~~ 193 (398)
-+|.+++|+++|++.+-++++ = .++...=....+ .+-..+.++.+++.|+..+ +.+. +++|. .+
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~---~~~~~~~i~~l~~~g~~~v~~dli-~GlPg---------qt 165 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHN---EEDVYEAIANAKKAGFDNISIDLI-YALPG---------QT 165 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEeee-cCCCC---------CC
Confidence 468899999999996666662 2 223322011223 4567789999999999743 3332 55553 22
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEEEccCchhhhh
Q 046009 194 QTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAFAL 229 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~ 229 (398)
.+.+.+=.+.+.+.=-+.|..+...-||.....
T Consensus 166 ---~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~~ 198 (377)
T PRK08599 166 ---IEDFKESLAKALALDIPHYSAYSLILEPKTVFY 198 (377)
T ss_pred ---HHHHHHHHHHHHccCCCEEeeeceeecCCChhH
Confidence 344544455543322345555555567765433
No 146
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=38.35 E-value=79 Score=31.88 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=54.5
Q ss_pred cHHHHHHHHHcCCCceeeccc-cc-ccccCCCCCCChhhhHHHHHHHHHHHHCCCeEE-EEecCCCCcHhHHhhhCCCCC
Q 046009 117 YKEDVKLMADTGLDAYRFSIS-WS-RLIPNGRGPVNPKGLQYYNSLINELISHGIQPH-VTLHHYDLPQALEDEYGGWIN 193 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~-Ws-ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~~gGw~~ 193 (398)
-++.++.|+++|++.+-++++ -+ ++... -|.. ...+-+.+.|+.+++.|+.++ ++|. +++|. .+
T Consensus 99 t~e~l~~l~~~Gv~risiGvqS~~~~~l~~-lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli-~GlPg---------qt 165 (360)
T TIGR00539 99 TAEWCKGLKGAGINRLSLGVQSFRDDKLLF-LGRQ--HSAKNIAPAIETALKSGIENISLDLM-YGLPL---------QT 165 (360)
T ss_pred CHHHHHHHHHcCCCEEEEecccCChHHHHH-hCCC--CCHHHHHHHHHHHHHcCCCeEEEecc-CCCCC---------CC
Confidence 368899999999986666662 32 23222 1221 125567789999999999854 4443 55653 22
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEEEccCchh
Q 046009 194 QTIVQDFTAYANVCFREFGDRVSYWTTVNEPNA 226 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~ 226 (398)
.+.+.+-.+.+.+.=-+.+..+...=||+.
T Consensus 166 ---~~~~~~~l~~~~~l~~~~is~y~l~~~~gT 195 (360)
T TIGR00539 166 ---LNSLKEELKLAKELPINHLSAYALSVEPNT 195 (360)
T ss_pred ---HHHHHHHHHHHHccCCCEEEeecceEcCCC
Confidence 344555555554432245555554445543
No 147
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=38.33 E-value=44 Score=37.90 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=43.5
Q ss_pred cCcHHHHHHHHHcCCCceeecccccccccC--C-----CCCCChh--hhHHHHHHHHHHHHCCCeEEEEe--cCCC
Q 046009 115 HKYKEDVKLMADTGLDAYRFSISWSRLIPN--G-----RGPVNPK--GLQYYNSLINELISHGIQPHVTL--HHYD 179 (398)
Q Consensus 115 ~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~--g-----~g~~n~~--~~~~Y~~~i~~l~~~GI~p~vtL--~H~d 179 (398)
....+-++.+++||++++=+|=-+.-.-.. | ...+|++ +.+-+++++++++++||.+|+++ .|..
T Consensus 16 ~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 16 DDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred HHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 446778899999999998766544311000 0 0122332 45668899999999999999985 4543
No 148
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=37.84 E-value=2.3e+02 Score=28.38 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=42.9
Q ss_pred HHHHHHHHHHCCCeEEEEecCC---C--CcHhHHhh-------------h--------C---CCCChhhHHHHHHHHHHH
Q 046009 157 YNSLINELISHGIQPHVTLHHY---D--LPQALEDE-------------Y--------G---GWINQTIVQDFTAYANVC 207 (398)
Q Consensus 157 Y~~~i~~l~~~GI~p~vtL~H~---d--~P~~l~~~-------------~--------g---Gw~~~~~~~~F~~ya~~~ 207 (398)
-++++++|+++|++.++..+-+ + .|..-+.+ + + .|+||++.+.|.+.-+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 4688999999999887655422 1 22221110 0 1 267899999887766655
Q ss_pred HHHhCCCceeEEEccCchhh
Q 046009 208 FREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 208 ~~~fgd~V~~w~t~NEP~~~ 227 (398)
. ..| ---+|+=+|||..+
T Consensus 146 ~-~~G-vdg~w~D~~Ep~~~ 163 (339)
T cd06604 146 V-DLG-VDGIWNDMNEPAVF 163 (339)
T ss_pred h-hCC-CceEeecCCCcccc
Confidence 4 232 13466889999865
No 149
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=37.68 E-value=1e+02 Score=29.16 Aligned_cols=55 Identities=11% Similarity=0.203 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 046009 154 LQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 154 ~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fg 212 (398)
.+...+.|..|+++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4556789999999999999999754432111 012455556666666666677776
No 150
>PRK10426 alpha-glucosidase; Provisional
Probab=37.61 E-value=2.5e+02 Score=30.94 Aligned_cols=105 Identities=22% Similarity=0.300 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCCceeecc-cccccccCCCC-------CCChhhhHHHHHHHHHHHHCCCeEEEEecCC---CCcHhHHh
Q 046009 118 KEDVKLMADTGLDAYRFSI-SWSRLIPNGRG-------PVNPKGLQYYNSLINELISHGIQPHVTLHHY---DLPQALED 186 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI-~Wsri~P~g~g-------~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~---d~P~~l~~ 186 (398)
.+-++.+++.|+..==+-+ .|.......-| .+|.+-+.-.+++|++|++.|++.++.+.=+ +.|..-+.
T Consensus 224 ~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e~ 303 (635)
T PRK10426 224 QKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEEA 303 (635)
T ss_pred HHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHHH
Confidence 3446777788876444322 67644221111 3355555556799999999999988877632 33433221
Q ss_pred h---h------C------------C---CCChhhHHHHHHHHHHHHHHhCCCceeE-EEccCc
Q 046009 187 E---Y------G------------G---WINQTIVQDFTAYANVCFREFGDRVSYW-TTVNEP 224 (398)
Q Consensus 187 ~---~------g------------G---w~~~~~~~~F~~ya~~~~~~fgd~V~~w-~t~NEP 224 (398)
+ | | + ++||+..+.|.+..+.-....| |+.| .=+||+
T Consensus 304 ~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 304 AEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 1 0 1 1 5799999999887765555555 6555 788994
No 151
>PRK12568 glycogen branching enzyme; Provisional
Probab=37.08 E-value=81 Score=35.38 Aligned_cols=98 Identities=12% Similarity=0.184 Sum_probs=58.2
Q ss_pred ccCcHHH-HHHHHHcCCCceeecc--------cccccccCCCCCCCh--hhhHHHHHHHHHHHHCCCeEEEEec--CCCC
Q 046009 114 YHKYKED-VKLMADTGLDAYRFSI--------SWSRLIPNGRGPVNP--KGLQYYNSLINELISHGIQPHVTLH--HYDL 180 (398)
Q Consensus 114 y~~y~eD-i~l~~~lG~~~~R~sI--------~Wsri~P~g~g~~n~--~~~~~Y~~~i~~l~~~GI~p~vtL~--H~d~ 180 (398)
|....+. ++.+++||++++-+.- +|. -.|.+--.+++ ...+-++.+|++|+++||++|+++. |+.-
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wG-Y~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWG-YQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCC-CCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 3334444 6889999999986532 342 11111001111 1245688999999999999999854 5421
Q ss_pred c-----------HhHH-h-h---hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 046009 181 P-----------QALE-D-E---YGGW-------INQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 181 P-----------~~l~-~-~---~gGw-------~~~~~~~~F~~ya~~~~~~fg 212 (398)
- .+-. + . +..| .++++.+.+.+=++.-+++|+
T Consensus 347 d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 347 DAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 1 0100 0 0 1123 367788888888888888887
No 152
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=36.83 E-value=69 Score=36.66 Aligned_cols=57 Identities=25% Similarity=0.335 Sum_probs=42.0
Q ss_pred ccCcHHHHHHHHHcCCCceeeccc---------------ccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSIS---------------WSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~---------------Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
+....+-+..+++||++++=+|=- +.+|.|. -| +.+-+++++++++++||++|+++-
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~-lG-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPE-LG-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCC-CC-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 344678889999999998866543 3334333 12 345689999999999999999863
No 153
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=36.05 E-value=5.4e+02 Score=27.09 Aligned_cols=69 Identities=13% Similarity=0.262 Sum_probs=44.6
Q ss_pred HHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHH----HHHHHCCCeE-EEEecCCCCcHhHHhhhCCCCCh
Q 046009 120 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLI----NELISHGIQP-HVTLHHYDLPQALEDEYGGWINQ 194 (398)
Q Consensus 120 Di~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i----~~l~~~GI~p-~vtL~H~d~P~~l~~~~gGw~~~ 194 (398)
=++.|.+||+..|-|-= ..|.|+|. -..+-.+-.++++ +.+.+.||+. ++|..-|..|.... |+.+||
T Consensus 83 aFef~~kLg~~~~~FHD--~D~~peg~--~~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~TnP 155 (434)
T TIGR02630 83 AFEFFEKLGVPYYCFHD--RDIAPEGA--SLRETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAATSP 155 (434)
T ss_pred HHHHHHHhCCCeeccCc--cccCCCCC--CHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCCCC
Confidence 35679999999887632 23778852 1222222334444 4466779985 56677789998753 899988
Q ss_pred h
Q 046009 195 T 195 (398)
Q Consensus 195 ~ 195 (398)
+
T Consensus 156 d 156 (434)
T TIGR02630 156 D 156 (434)
T ss_pred C
Confidence 7
No 154
>PRK05474 xylose isomerase; Provisional
Probab=35.01 E-value=5.7e+02 Score=27.00 Aligned_cols=69 Identities=14% Similarity=0.257 Sum_probs=45.0
Q ss_pred HHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHH----HHHHHCCCe-EEEEecCCCCcHhHHhhhCCCCCh
Q 046009 120 DVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLI----NELISHGIQ-PHVTLHHYDLPQALEDEYGGWINQ 194 (398)
Q Consensus 120 Di~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i----~~l~~~GI~-p~vtL~H~d~P~~l~~~~gGw~~~ 194 (398)
=++.+.+||+..|-|-= ..|.|+|. -..+..+..++++ +.+.+-||+ +++|..-|..|.... |+.+||
T Consensus 84 afe~~~kLg~~~~~FHD--~D~~peg~--s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~Tnp 156 (437)
T PRK05474 84 AFEFFTKLGVPYYCFHD--VDVAPEGA--SLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GAATNP 156 (437)
T ss_pred HHHHHHHhCCCeeccCc--cccCCCCC--CHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---CcCCCC
Confidence 35779999999887632 23778752 2222233345554 445677888 456777789998753 899988
Q ss_pred h
Q 046009 195 T 195 (398)
Q Consensus 195 ~ 195 (398)
+
T Consensus 157 d 157 (437)
T PRK05474 157 D 157 (437)
T ss_pred C
Confidence 7
No 155
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=34.86 E-value=1.5e+02 Score=30.52 Aligned_cols=108 Identities=19% Similarity=0.337 Sum_probs=64.0
Q ss_pred cHHHHHHHHHcCCCc--eeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCC---CCc---HhHHhh-
Q 046009 117 YKEDVKLMADTGLDA--YRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHY---DLP---QALEDE- 187 (398)
Q Consensus 117 y~eDi~l~~~lG~~~--~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~---d~P---~~l~~~- 187 (398)
..+-++.+++.|+.. +=++..|..-.. .-.+|++.+.-.+++++.|+++|++.++.++-+ +-+ ..-+.+
T Consensus 45 v~~~i~~~~~~~iP~d~~~iD~~~~~~~~--~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~ 122 (441)
T PF01055_consen 45 VREVIDRYRSNGIPLDVIWIDDDYQDGYG--DFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKE 122 (441)
T ss_dssp HHHHHHHHHHTT--EEEEEE-GGGSBTTB--TT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHH
T ss_pred HHHHHHHHHHcCCCccceecccccccccc--ccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhh
Confidence 455567777776653 444445655221 235566656567899999999999988776532 222 111110
Q ss_pred --h-----CC----------------CCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 188 --Y-----GG----------------WINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 188 --~-----gG----------------w~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
+ .| +.+++..+.|.+..+.+.+.+| ---+|.=+|||..+
T Consensus 123 ~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 184 (441)
T PF01055_consen 123 KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEPSSF 184 (441)
T ss_dssp TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCcccc
Confidence 0 12 6789989999888777776654 23467899999975
No 156
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=34.62 E-value=1.4e+02 Score=30.17 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecC
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHH 177 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H 177 (398)
.+|++...+.|++.+|+...+++. +--.+.++.+++.|++..+++..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~ 137 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMM 137 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEe
Confidence 589999999999999998755543 13478899999999999888753
No 157
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=34.25 E-value=29 Score=26.45 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=31.5
Q ss_pred cccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCC
Q 046009 139 SRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYD 179 (398)
Q Consensus 139 sri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d 179 (398)
+++.|+ .+.=-+++++..-+++..|.++|| +++.|++-+
T Consensus 19 s~l~p~-~~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPK-EGADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCcc-cccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 567888 455557889999999999999999 888887543
No 158
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=34.23 E-value=1.2e+02 Score=37.23 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=44.2
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccC--C-----CCCCChh--hhHHHHHHHHHHHHCCCeEEEEe--cCCC
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPN--G-----RGPVNPK--GLQYYNSLINELISHGIQPHVTL--HHYD 179 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~--g-----~g~~n~~--~~~~Y~~~i~~l~~~GI~p~vtL--~H~d 179 (398)
+....+-++.+++||++++=+|=-+.-.--+ | ...+|++ +.+-+++++++++++||+.|+++ +|..
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 4456777899999999998766544311000 0 0122332 45568999999999999999986 4653
No 159
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=33.39 E-value=58 Score=33.61 Aligned_cols=50 Identities=18% Similarity=0.416 Sum_probs=42.9
Q ss_pred cCCccccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEE
Q 046009 109 IASDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVT 174 (398)
Q Consensus 109 ~a~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vt 174 (398)
.|+|-+-.+++-|+..++.|++++ |+|. |.+.. +++|+++-++||..+.|
T Consensus 334 lASDAFFPF~D~Id~Aa~~GV~aI--------iQPG--GSiRD------~evI~aane~giaMvfT 383 (390)
T PRK07106 334 LGSDAFFPFGDNIERAAKSGVKYI--------AQPG--GSIRD------DNVIETCNKYGMTMAFT 383 (390)
T ss_pred EEecccCCCCchHHHHHHcCCEEE--------ECCC--CCCCc------HHHHHHHHHhCCEEEEC
Confidence 589999999999999999999987 8888 44543 37899999999988876
No 160
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=32.66 E-value=1.6e+02 Score=30.46 Aligned_cols=84 Identities=18% Similarity=0.347 Sum_probs=56.6
Q ss_pred HHHHHHHHHc-CCCceeecc--cccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEE-EEecCCCCcHhHHhhhCCCCC
Q 046009 118 KEDVKLMADT-GLDAYRFSI--SWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPH-VTLHHYDLPQALEDEYGGWIN 193 (398)
Q Consensus 118 ~eDi~l~~~l-G~~~~R~sI--~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~~gGw~~ 193 (398)
.+|++.++++ |+. .++++ .|+.. . .++++.+.++++||+.. ++...|..|.+ ++|..+|
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH~~~d~~-------~------d~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~ 105 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALHIPWDRV-------E------DYEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTH 105 (378)
T ss_pred HHHHHHHHhhcCCC-CceeeccCCccc-------c------CHHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCC
Confidence 5677777776 444 55555 44111 2 36778888999999987 78877766654 3477877
Q ss_pred hh--hHHHHHHHHHHH---HHHhCC-CceeE
Q 046009 194 QT--IVQDFTAYANVC---FREFGD-RVSYW 218 (398)
Q Consensus 194 ~~--~~~~F~~ya~~~---~~~fgd-~V~~w 218 (398)
++ +.+.-.++++.| ++++|. .|..|
T Consensus 106 pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 106 PDKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 64 667777877766 577887 45555
No 161
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=32.65 E-value=3e+02 Score=24.80 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEE
Q 046009 194 QTIVQDFTAYANVCFREFGDRVSYWT 219 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~fgd~V~~w~ 219 (398)
.+..+....|++.+-++.|-++-.+.
T Consensus 99 ~~~~~~~~~f~~~v~~~~G~~~~iY~ 124 (184)
T cd06525 99 DELNDYVLRFIEEFEKLSGLKVGIYT 124 (184)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 33446666677777776666554443
No 162
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=32.30 E-value=1.4e+02 Score=30.42 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=59.7
Q ss_pred CccccCcHHHHHHHHHcCCCceeecccccccccC------CCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhH
Q 046009 111 SDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPN------GRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQAL 184 (398)
Q Consensus 111 ~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~------g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l 184 (398)
++.+-.-++=++.+.++|++-+-+||+ -+-|. |...+| +++-.++.+.+.+.||..+++ |.|+
T Consensus 197 Tng~~L~~~lv~eLeeAGLdRiNlSv~--aLDpk~Ak~L~G~~dYd---v~kvle~aE~i~~a~idvlIa------Pv~l 265 (414)
T COG2100 197 TNGVLLSKKLVDELEEAGLDRINLSVD--ALDPKLAKMLAGRKDYD---VKKVLEVAEYIANAGIDVLIA------PVWL 265 (414)
T ss_pred eCceeccHHHHHHHHHhCCceEEeecc--cCCHHHHHHhcCccccC---HHHHHHHHHHHHhCCCCEEEe------eeec
Confidence 444555677789999999997777763 34444 222455 778889999999999999875 6777
Q ss_pred HhhhCCCCChhhHHHHHHHHHHHH
Q 046009 185 EDEYGGWINQTIVQDFTAYANVCF 208 (398)
Q Consensus 185 ~~~~gGw~~~~~~~~F~~ya~~~~ 208 (398)
.| .|.+-...+..||+.+-
T Consensus 266 ----PG-~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 266 ----PG-VNDDEMPKIIEWAREIG 284 (414)
T ss_pred ----CC-cChHHHHHHHHHHHHhC
Confidence 34 56666888899988764
No 163
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=31.65 E-value=5.5e+02 Score=25.83 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=80.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHh----------HHhhhCC-----CC---ChhhHHHHHHHHHHH
Q 046009 146 RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQA----------LEDEYGG-----WI---NQTIVQDFTAYANVC 207 (398)
Q Consensus 146 ~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~----------l~~~~gG-----w~---~~~~~~~F~~ya~~~ 207 (398)
.+-++.+.+..++++.+.++++|-+.++=|.|.+.-.. ......+ .+ =+++++.|++=|+.+
T Consensus 72 ~~~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a 151 (337)
T PRK13523 72 LGIWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRA 151 (337)
T ss_pred eecCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 34568888999999999999999999999999643110 0000000 11 125777888766665
Q ss_pred HHHhC-CCceeEEEccCchhhhhcccccCCC-CCCC--CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 046009 208 FREFG-DRVSYWTTVNEPNAFALLGYDIGIA-PPKR--CSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQDK 283 (398)
Q Consensus 208 ~~~fg-d~V~~w~t~NEP~~~~~~gy~~g~~-~Pg~--~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~~ 283 (398)
.+ -| |-|. +.+-.||+...| -|.. +.+. .|.| +-|-++=-...++.+|+..
T Consensus 152 ~~-aGfDgVe---------ih~ahGyLl~qFlSp~~N~RtD~-----yGGs-------lenR~Rf~~eii~~ir~~~--- 206 (337)
T PRK13523 152 KE-AGFDVIE---------IHGAHGYLINEFLSPLSNKRTDE-----YGGS-------PENRYRFLREIIDAVKEVW--- 206 (337)
T ss_pred HH-cCCCEEE---------EccccchHHHHhcCCccCCcCCC-----CCCC-------HHHHHHHHHHHHHHHHHhc---
Confidence 54 33 3332 345668887755 3421 2111 1222 3344444456667777653
Q ss_pred CcceEEEEeecCccccCCCCHHHH-HHHHHH
Q 046009 284 QHGYIGMSIFTYGLLPLTNSTEDA-IATQRY 313 (398)
Q Consensus 284 ~~gkIGi~~~~~~~yP~s~~p~D~-~Aa~~~ 313 (398)
+..||+-++...+.+-..+++|. +.++..
T Consensus 207 -~~~v~vRis~~d~~~~G~~~~e~~~i~~~l 236 (337)
T PRK13523 207 -DGPLFVRISASDYHPGGLTVQDYVQYAKWM 236 (337)
T ss_pred -CCCeEEEecccccCCCCCCHHHHHHHHHHH
Confidence 24688877765444433355554 344443
No 164
>PLN02389 biotin synthase
Probab=31.09 E-value=1.4e+02 Score=30.82 Aligned_cols=58 Identities=21% Similarity=0.182 Sum_probs=42.3
Q ss_pred CcHHHHHHHHHcCCCceeecccccc-cccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsr-i~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
.-+|.++.|+++|++.|-.+++=++ +.|+-...- .++..-+.++.+++.||++..++-
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~---s~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTR---SYDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCC---CHHHHHHHHHHHHHcCCeEeEEEE
Confidence 5689999999999999998885222 444311111 366778999999999999876653
No 165
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=30.95 E-value=1.5e+02 Score=25.90 Aligned_cols=58 Identities=14% Similarity=0.226 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCc
Q 046009 154 LQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFGDRV 215 (398)
Q Consensus 154 ~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fgd~V 215 (398)
.+=++-+++.|++.|++|++.+.=.. +.|. .|-| .+++..+.|.+=.+..+++.|-.|
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~PvN-g~wy--dytG-~~~~~r~~~y~kI~~~~~~~gf~v 92 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPVN-GKWY--DYTG-LSKEMRQEYYKKIKYQLKSQGFNV 92 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHHH--HHTT---HHHHHHHHHHHHHHHHTTT--E
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCc-HHHH--HHhC-CCHHHHHHHHHHHHHHHHHCCCEE
Confidence 44567899999999999999984110 2343 2445 467778888888888888888543
No 166
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=30.83 E-value=2.8e+02 Score=24.14 Aligned_cols=58 Identities=12% Similarity=0.161 Sum_probs=39.2
Q ss_pred cCcHHHHHHHHHcCCCceeeccc-ccc-cccCCCCCCChhhhHHHHHHHHHHHHCC-CeEEEEe
Q 046009 115 HKYKEDVKLMADTGLDAYRFSIS-WSR-LIPNGRGPVNPKGLQYYNSLINELISHG-IQPHVTL 175 (398)
Q Consensus 115 ~~y~eDi~l~~~lG~~~~R~sI~-Wsr-i~P~g~g~~n~~~~~~Y~~~i~~l~~~G-I~p~vtL 175 (398)
..-++.++.|++.|++.+.+|++ ++. +...-....+ .+.+.+.++.++++| +.+.+.+
T Consensus 97 ~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 97 TLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred cCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 33478899999999999999885 543 2211011112 467889999999999 6555444
No 167
>PLN02960 alpha-amylase
Probab=30.44 E-value=93 Score=35.64 Aligned_cols=94 Identities=12% Similarity=0.197 Sum_probs=59.2
Q ss_pred cccCcHHH-HHHHHHcCCCceeeccc--------cc-------ccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEe-
Q 046009 113 GYHKYKED-VKLMADTGLDAYRFSIS--------WS-------RLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTL- 175 (398)
Q Consensus 113 ~y~~y~eD-i~l~~~lG~~~~R~sI~--------Ws-------ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL- 175 (398)
.|.-..+. ++.+++||++++-+.-- |. .+.|. -| ..+=++.+|++++++||++|+++
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~-yG-----tp~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSR-FG-----TPDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccc-cC-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 45555444 89999999999876421 21 11111 12 23458899999999999999997
Q ss_pred -cCCCC--cHhH--Hhh-------------hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 046009 176 -HHYDL--PQAL--EDE-------------YGGW-------INQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 176 -~H~d~--P~~l--~~~-------------~gGw-------~~~~~~~~F~~ya~~~~~~fg 212 (398)
.|+.- +..| .+. +..| .++++.+.+.+=++.-+++|+
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 45431 1111 010 0112 356788888888888888887
No 168
>PRK12677 xylose isomerase; Provisional
Probab=30.13 E-value=3.8e+02 Score=27.53 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=54.1
Q ss_pred CcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEE-EEecCCCCcHhHHhhhCCCCCh
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPH-VTLHHYDLPQALEDEYGGWINQ 194 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~~gGw~~~ 194 (398)
..+|-++.++++|++.+=+.. ..+.|-+ ....+--+..+++-+.+.++||+.. ++...|..|.+ +.|++.++
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~--~~l~p~~--~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHD--DDLVPFG--ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecc--cccCCCC--CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 367889999999999886532 2233331 1111111246788888999999966 56655555543 33788875
Q ss_pred h--hHHHHHHHHHHH---HHHhCC
Q 046009 195 T--IVQDFTAYANVC---FREFGD 213 (398)
Q Consensus 195 ~--~~~~F~~ya~~~---~~~fgd 213 (398)
+ ..+.-.++.+.+ ++.+|-
T Consensus 105 d~~~R~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 105 DRDVRRYALRKVLRNIDLAAELGA 128 (384)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4 223324444433 555664
No 169
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=29.81 E-value=2e+02 Score=30.85 Aligned_cols=98 Identities=11% Similarity=0.141 Sum_probs=56.3
Q ss_pred ccCcH-----HHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEe----cCCCCcHhH
Q 046009 114 YHKYK-----EDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTL----HHYDLPQAL 184 (398)
Q Consensus 114 y~~y~-----eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL----~H~d~P~~l 184 (398)
|.+|. +|++...+.|++.+|+....+.+ +-.+..++.+++.|.....++ .+-..|..+
T Consensus 91 y~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv-------------~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~ 157 (499)
T PRK12330 91 YRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP-------------RNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGF 157 (499)
T ss_pred ccCcchhHHHHHHHHHHHcCCCEEEEEecCChH-------------HHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHH
Confidence 55555 47899999999999998765554 123344444555554442222 112222221
Q ss_pred Hhh----------------hCCCCChhhHHHHHHHHHHHHHHhC-CCceeEEEccCchhh
Q 046009 185 EDE----------------YGGWINQTIVQDFTAYANVCFREFG-DRVSYWTTVNEPNAF 227 (398)
Q Consensus 185 ~~~----------------~gGw~~~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEP~~~ 227 (398)
.+. --|-..|. ...+.++.+-++++ +..-...+.|-..+.
T Consensus 158 ~~~a~~l~~~Gad~I~IkDtaGll~P~---~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA 214 (499)
T PRK12330 158 VEQAKRLLDMGADSICIKDMAALLKPQ---PAYDIVKGIKEACGEDTRINLHCHSTTGVT 214 (499)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCHH---HHHHHHHHHHHhCCCCCeEEEEeCCCCCcH
Confidence 110 14556654 55666777778887 444566788887654
No 170
>PTZ00445 p36-lilke protein; Provisional
Probab=29.81 E-value=1e+02 Score=29.37 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=39.8
Q ss_pred HHHHHHcCCCceeecccccccccCCCCCCChh---------hhHHHHHHHHHHHHCCCeEEEEec
Q 046009 121 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPK---------GLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 121 i~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~---------~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
++++++.|++++=+.++=+-|---..|-.++. +-.-...++.+|+++||...|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 68899999999988876554432211322222 334577899999999999988876
No 171
>PRK09936 hypothetical protein; Provisional
Probab=29.44 E-value=3.4e+02 Score=27.08 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHh
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALED 186 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~ 186 (398)
.|++=++.++.+|++.. =+.|++.--+.-|.- ++ +..+.++...+.||+.+|.|+ +| |.|.+.
T Consensus 39 qWq~~~~~~~~~G~~tL--ivQWt~yG~~~fg~~--~g--~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q~ 101 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTL--VVQWTRYGDADFGGQ--RG--WLAKRLAAAQQAGLKLVVGLY-AD-PEFFMH 101 (296)
T ss_pred HHHHHHHHHHHcCCcEE--EEEeeeccCCCcccc--hH--HHHHHHHHHHHcCCEEEEccc-CC-hHHHHH
Confidence 35667888999999875 358998721101211 33 688999999999999999997 56 666654
No 172
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=29.30 E-value=1.5e+02 Score=33.12 Aligned_cols=52 Identities=17% Similarity=0.367 Sum_probs=42.2
Q ss_pred HHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHH
Q 046009 157 YNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFR 209 (398)
Q Consensus 157 Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~ 209 (398)
...+++.++++|+..=+..+|-.++.-+.++||. +.+-.++.-.+|++.|-+
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 3349999999999999999999999999999875 545567777777776643
No 173
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.22 E-value=1.8e+02 Score=28.50 Aligned_cols=77 Identities=16% Similarity=0.261 Sum_probs=43.3
Q ss_pred CChhhhHHHHHHHHHHHHCCCeEEEEecCC-CC-cH-h----HHhhh-----------CCCCChhhHHHHHHHHHHHHHH
Q 046009 149 VNPKGLQYYNSLINELISHGIQPHVTLHHY-DL-PQ-A----LEDEY-----------GGWINQTIVQDFTAYANVCFRE 210 (398)
Q Consensus 149 ~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~-d~-P~-~----l~~~~-----------gGw~~~~~~~~F~~ya~~~~~~ 210 (398)
+|++-+.-.+++|++|++.|++.++.++-. .. |. . +.... ..++||+..+.|.+-....+..
T Consensus 68 ~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~ 147 (292)
T cd06595 68 WNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEK 147 (292)
T ss_pred EChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHh
Confidence 444444456788899999999888777532 11 10 0 11111 1256777766554433333333
Q ss_pred hCCCce-eEEEccCchhh
Q 046009 211 FGDRVS-YWTTVNEPNAF 227 (398)
Q Consensus 211 fgd~V~-~w~t~NEP~~~ 227 (398)
.| |+ +|.=+|||...
T Consensus 148 ~G--idg~W~D~~E~~~~ 163 (292)
T cd06595 148 QG--VDFWWLDWQQGNRT 163 (292)
T ss_pred cC--CcEEEecCCCCccc
Confidence 33 44 67889999754
No 174
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=28.80 E-value=1.3e+02 Score=29.51 Aligned_cols=60 Identities=27% Similarity=0.389 Sum_probs=46.8
Q ss_pred CcHHHHHHHHHcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHCCCeEEEEe
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNSLINELISHGIQPHVTL 175 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL 175 (398)
--++|++...+.|++.+-+.++=|...-.. -+.=-++.++.+.++++..+++|+++-+++
T Consensus 75 ~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 75 ANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 347999999999999988877655543221 233345689999999999999999999888
No 175
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=28.36 E-value=2.1e+02 Score=31.29 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=56.9
Q ss_pred cHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcH----hHHhh-----
Q 046009 117 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQ----ALEDE----- 187 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~----~l~~~----- 187 (398)
-++|++..++.|++.+|+..+-+.+ +-....++..+++|.....++..-+-|. .+.+.
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~ 164 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELE 164 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 3566789999999999998765543 1234556667777777666664322241 11100
Q ss_pred -----------hCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 188 -----------YGGWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 188 -----------~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
-.|-..|. ...+.++.+-++++ ..-...+.|-..+.
T Consensus 165 ~~Gad~I~i~Dt~G~~~P~---~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla 211 (592)
T PRK09282 165 EMGCDSICIKDMAGLLTPY---AAYELVKALKEEVD-LPVQLHSHCTSGLA 211 (592)
T ss_pred HcCCCEEEECCcCCCcCHH---HHHHHHHHHHHhCC-CeEEEEEcCCCCcH
Confidence 03445544 55666667777775 34466788887654
No 176
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=28.30 E-value=6.2e+02 Score=25.40 Aligned_cols=145 Identities=14% Similarity=0.127 Sum_probs=79.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCC---------cHhHHhhhCC-----CCC---hhhHHHHHHHHHHHH
Q 046009 146 RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDL---------PQALEDEYGG-----WIN---QTIVQDFTAYANVCF 208 (398)
Q Consensus 146 ~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~---------P~~l~~~~gG-----w~~---~~~~~~F~~ya~~~~ 208 (398)
.+-.+++.+..++++.+.++++|-+.++=|.|.+. |........+ .+. +++++.|++=|+.+.
T Consensus 68 ~~~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~a~ 147 (353)
T cd02930 68 PVLNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAR 147 (353)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999643 1100000000 111 346677777665554
Q ss_pred HHhCCCceeEEEccCchhhhhcccccCCC-CCCC--CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 046009 209 REFGDRVSYWTTVNEPNAFALLGYDIGIA-PPKR--CSPPFKNCRKGNSSTEPYMAVHHVLLAHASVARLYRKNYQDKQH 285 (398)
Q Consensus 209 ~~fgd~V~~w~t~NEP~~~~~~gy~~g~~-~Pg~--~~~~~~~~~~~~s~~~~~~a~hnlllAHA~Av~~~r~~~~~~~~ 285 (398)
+.==|-|. +.+-.||+...| -|.. +.+. .|.| +-|-..--...++.+|+..+. +
T Consensus 148 ~aGfDgVe---------ih~ahGyLl~qFlsp~~N~RtD~-----yGGs-------lenR~r~~~eiv~aIR~~vG~--d 204 (353)
T cd02930 148 EAGYDGVE---------IMGSEGYLINQFLAPRTNKRTDE-----WGGS-------FENRMRFPVEIVRAVRAAVGE--D 204 (353)
T ss_pred HcCCCEEE---------EecccchHHHHhcCCccCCCcCc-----cCCC-------HHHHhHHHHHHHHHHHHHcCC--C
Confidence 43213343 335568887755 3321 1111 1211 334444446677778876532 3
Q ss_pred ceEEEEeecCccccCCCCHHHH-HHHHHH
Q 046009 286 GYIGMSIFTYGLLPLTNSTEDA-IATQRY 313 (398)
Q Consensus 286 gkIGi~~~~~~~yP~s~~p~D~-~Aa~~~ 313 (398)
..|++-++...+.+-..++++. ..+++.
T Consensus 205 ~~v~iRi~~~D~~~~g~~~~e~~~i~~~L 233 (353)
T cd02930 205 FIIIYRLSMLDLVEGGSTWEEVVALAKAL 233 (353)
T ss_pred ceEEEEecccccCCCCCCHHHHHHHHHHH
Confidence 4577766654333322344443 444443
No 177
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=28.29 E-value=57 Score=34.11 Aligned_cols=61 Identities=18% Similarity=0.321 Sum_probs=37.9
Q ss_pred cHHHHHHHHHcCCCceeeccc-cc-ccccCCCCCCChhhhHHHHHHHHHHHHCCCe-EEEEecCCCCc
Q 046009 117 YKEDVKLMADTGLDAYRFSIS-WS-RLIPNGRGPVNPKGLQYYNSLINELISHGIQ-PHVTLHHYDLP 181 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~-Ws-ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~-p~vtL~H~d~P 181 (398)
-+|.+++|+++|++.+-++++ =+ ++...-....+ .+.+.+.++.+++.|++ +-++|. +++|
T Consensus 150 ~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (455)
T TIGR00538 150 TKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLP 213 (455)
T ss_pred CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCC
Confidence 378899999999986666552 21 12211011123 45678899999999997 344543 4555
No 178
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.75 E-value=2.4e+02 Score=27.89 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=43.8
Q ss_pred cHHHHHHHHHcCCCceee----cccccccccC-C--CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhH
Q 046009 117 YKEDVKLMADTGLDAYRF----SISWSRLIPN-G--RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQAL 184 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~----sI~Wsri~P~-g--~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l 184 (398)
.++-|++|+.+|+|.+-+ ++.+.. .|. + +|.+.++. ++++++.++++||+++..+. +|..+
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~~e---i~ei~~yA~~~gI~vIPeid---~pGH~ 86 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTKEE---IREIDDYAAELGIEVIPLIQ---TLGHL 86 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCHHH---HHHHHHHHHHcCCEEEecCC---CHHHH
Confidence 677899999999998876 333322 222 1 46677554 67999999999999998764 55444
No 179
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=27.09 E-value=4e+02 Score=26.19 Aligned_cols=62 Identities=16% Similarity=0.372 Sum_probs=43.6
Q ss_pred cHHHHHHHHHcCCCceeeccc----ccc---cccC------------CCCCCChhhhHHHHHHHHHHHHCCCeEEEEecC
Q 046009 117 YKEDVKLMADTGLDAYRFSIS----WSR---LIPN------------GRGPVNPKGLQYYNSLINELISHGIQPHVTLHH 177 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~----Wsr---i~P~------------g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H 177 (398)
.++-|+.|+..++|.+.+-++ |+- ..|+ +.|.+.++ =++++++.++++||+.+.-+
T Consensus 18 lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~---di~elv~yA~~rgI~viPEi-- 92 (303)
T cd02742 18 IKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYA---QLKDIIEYAAARGIEVIPEI-- 92 (303)
T ss_pred HHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHH---HHHHHHHHHHHcCCEEEEec--
Confidence 566799999999998877665 522 1222 12445544 46799999999999999876
Q ss_pred CCCcHhH
Q 046009 178 YDLPQAL 184 (398)
Q Consensus 178 ~d~P~~l 184 (398)
|+|...
T Consensus 93 -D~PGH~ 98 (303)
T cd02742 93 -DMPGHS 98 (303)
T ss_pred -cchHHH
Confidence 566544
No 180
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=27.03 E-value=1.6e+02 Score=27.49 Aligned_cols=79 Identities=15% Similarity=0.152 Sum_probs=53.3
Q ss_pred HHHHHH----HHHcCCCceeecccccccccCC-CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCC
Q 046009 118 KEDVKL----MADTGLDAYRFSISWSRLIPNG-RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWI 192 (398)
Q Consensus 118 ~eDi~l----~~~lG~~~~R~sI~Wsri~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~ 192 (398)
++|++. +++.|++.+|+.++=+...... -+.--++.++...+.++.+++.|++..+++-+.+ ..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~-----------~~ 134 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS-----------RT 134 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG-----------GS
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc-----------cc
Confidence 455555 4569999999988655532221 2322345788899999999999999988775422 12
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 046009 193 NQTIVQDFTAYANVCFRE 210 (398)
Q Consensus 193 ~~~~~~~F~~ya~~~~~~ 210 (398)
+ .+.+.++++.+.+.
T Consensus 135 ~---~~~~~~~~~~~~~~ 149 (237)
T PF00682_consen 135 D---PEELLELAEALAEA 149 (237)
T ss_dssp S---HHHHHHHHHHHHHH
T ss_pred c---HHHHHHHHHHHHHc
Confidence 2 45777777777665
No 181
>PRK07094 biotin synthase; Provisional
Probab=26.91 E-value=1.1e+02 Score=30.12 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=39.9
Q ss_pred CcHHHHHHHHHcCCCceeeccc-c-cccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEe
Q 046009 116 KYKEDVKLMADTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTL 175 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~-W-sri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL 175 (398)
.-+|+++.|+++|++.+-++++ - .++...-....+ .+-+.+.++.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecceE
Confidence 4579999999999999988884 2 233332111122 5568889999999999865544
No 182
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=26.56 E-value=1.8e+02 Score=29.47 Aligned_cols=92 Identities=15% Similarity=0.263 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCceeecc-ccc-ccccCCCCC-CChhhhHHHHHHHHHHHHCCCe-EEEEecCCCCcHhHHhhhCCCCC
Q 046009 118 KEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGP-VNPKGLQYYNSLINELISHGIQ-PHVTLHHYDLPQALEDEYGGWIN 193 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI-~Ws-ri~P~g~g~-~n~~~~~~Y~~~i~~l~~~GI~-p~vtL~H~d~P~~l~~~~gGw~~ 193 (398)
+|.+++|+++|++.+-+++ +=+ ++... -|. .+ .+-+.+.++.++++|+. +-++|- +++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~-l~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg----------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQ-LNRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI----------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC-----------
Confidence 6899999999998655555 221 22222 122 23 44577899999999997 445554 45552
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEEEccCchh
Q 046009 194 QTIVQDFTAYANVCFREFGDRVSYWTTVNEPNA 226 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~ 226 (398)
++.+.|.+=.+.+.+-=-+.|..+...=||..
T Consensus 167 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 167 -LKLKDLDEVFNFILKHKINHISFYSLEIKEGS 198 (353)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEEeeEecCCC
Confidence 23455555555554332356666655556664
No 183
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=26.15 E-value=3.5e+02 Score=32.05 Aligned_cols=59 Identities=19% Similarity=0.280 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHCCCeEEEEec--CCC--------CcHhHHh---------hhCC----CCChhhHHHHHHHHHHHHHH
Q 046009 154 LQYYNSLINELISHGIQPHVTLH--HYD--------LPQALED---------EYGG----WINQTIVQDFTAYANVCFRE 210 (398)
Q Consensus 154 ~~~Y~~~i~~l~~~GI~p~vtL~--H~d--------~P~~l~~---------~~gG----w~~~~~~~~F~~ya~~~~~~ 210 (398)
++=+++||++|+++||++|+.+- |.. .|.|..- .++| ..++.+.+.+.+-++.-+++
T Consensus 554 i~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e 633 (1111)
T TIGR02102 554 IAEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE 633 (1111)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999853 421 1332210 0111 13566777888888888888
Q ss_pred hC
Q 046009 211 FG 212 (398)
Q Consensus 211 fg 212 (398)
|+
T Consensus 634 y~ 635 (1111)
T TIGR02102 634 FK 635 (1111)
T ss_pred cC
Confidence 76
No 184
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=25.86 E-value=1.9e+02 Score=28.11 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=32.2
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHH
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINEL 164 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l 164 (398)
....++||+.++++|++.+=|++- +.+|.+|.+ ..+++++..
T Consensus 72 ~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~---~~~~Li~~a 113 (248)
T PRK11572 72 FAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMP---RMRKIMAAA 113 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHH---HHHHHHHHh
Confidence 456789999999999999999874 225889955 455666666
No 185
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=25.75 E-value=83 Score=33.71 Aligned_cols=55 Identities=25% Similarity=0.491 Sum_probs=44.8
Q ss_pred CcCCccccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEE-ecCC
Q 046009 108 DIASDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVT-LHHY 178 (398)
Q Consensus 108 ~~a~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vt-L~H~ 178 (398)
-.|+|-+-.+++=++.+++.|++++ |+|.| .+.. +++|+++.++||..+.| .-||
T Consensus 454 vlASDAFFPF~D~ve~aa~aGi~aI--------iQPGG--SiRD------~evI~aa~e~giaMvfTg~RhF 509 (511)
T TIGR00355 454 SLASDAFFPFRDGVEEAAAAGITCI--------IQPGG--SMRD------EDSIWAADEHGIVMVFTGMRHF 509 (511)
T ss_pred EEEeccccCCCccHHHHHHcCCEEE--------EcCCC--CCCc------HHHHHHHHHhCCEEEECCCCCC
Confidence 3589999999999999999999987 88884 4442 37899999999998877 4454
No 186
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=25.62 E-value=29 Score=33.76 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=42.3
Q ss_pred HHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCchhhhhcccccCCCC
Q 046009 164 LISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAFALLGYDIGIAP 238 (398)
Q Consensus 164 l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~~~~gy~~g~~~ 238 (398)
+.++.+.|+++||||+.= ..-+.+....+.++.+.+=++.--.++-.+-..|---....+.+-.||....++
T Consensus 77 ~~a~~~~pl~SlHH~~~~---~PifP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 77 LEAHPLAPLVSLHHWDSV---DPIFPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred eecCCCCceeeeeehhhc---cccCCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 444568999999999852 223455566666777776444444443333223333333344556799877764
No 187
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=25.47 E-value=2.4e+02 Score=29.02 Aligned_cols=53 Identities=13% Similarity=0.239 Sum_probs=32.7
Q ss_pred HHHHHHcCCCceeec------c-cccccccCCCCCCChh-hhHHHHHHHHHHHHCCCeEEEE
Q 046009 121 VKLMADTGLDAYRFS------I-SWSRLIPNGRGPVNPK-GLQYYNSLINELISHGIQPHVT 174 (398)
Q Consensus 121 i~l~~~lG~~~~R~s------I-~Wsri~P~g~g~~n~~-~~~~Y~~~i~~l~~~GI~p~vt 174 (398)
++++|++|++.+=+- . -|.-=..+ -...+.- .-+...++.++++++||+.-+-
T Consensus 87 a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~-~n~~~~~pkrDiv~el~~A~rk~Glk~G~Y 147 (384)
T smart00812 87 ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSN-WNAVDTGPKRDLVGELADAVRKRGLKFGLY 147 (384)
T ss_pred HHHHHHcCCCeEEeeeeecCCccccCCCCCC-CcccCCCCCcchHHHHHHHHHHcCCeEEEE
Confidence 799999999977641 1 22111000 0000000 2467889999999999998873
No 188
>PLN02923 xylose isomerase
Probab=25.45 E-value=8.3e+02 Score=25.90 Aligned_cols=73 Identities=15% Similarity=0.309 Sum_probs=45.9
Q ss_pred HHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHH----HHHCCCeEEE-EecCCCCcHhHHhhhCCCCChh
Q 046009 121 VKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINE----LISHGIQPHV-TLHHYDLPQALEDEYGGWINQT 195 (398)
Q Consensus 121 i~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~----l~~~GI~p~v-tL~H~d~P~~l~~~~gGw~~~~ 195 (398)
++.+.+||+..|-|-= ..|.|+|. -..+.-+..+++++. +.+-||+..+ |-.-|..|.... |+.+|++
T Consensus 129 FEf~~kLG~~y~cFHD--~Dl~Peg~--sl~E~~~nld~ivd~~ke~~~~TGikllwgTaNlFshPrf~~---GAaTspd 201 (478)
T PLN02923 129 FEFLKKLGVDRWCFHD--RDIAPDGK--TLEESNANLDEVVALAKELQEGTKIRPLWGTAQLFKHPRYMH---GAATSSE 201 (478)
T ss_pred HHHHHHhCCCeEccCc--cccCCCCC--CHHHHHhhHHHHHHHHHHHhHhhCceeeeeccccccCccccC---CcCCCCC
Confidence 5688999999887632 23778852 222323334455444 5567998654 555688897763 8899887
Q ss_pred hHHHHH
Q 046009 196 IVQDFT 201 (398)
Q Consensus 196 ~~~~F~ 201 (398)
.+-|+
T Consensus 202 -~dV~a 206 (478)
T PLN02923 202 -VGVYA 206 (478)
T ss_pred -HHHHH
Confidence 34443
No 189
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=25.44 E-value=2.5e+02 Score=26.95 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCC--ceeecccccccccCCCC--CCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCC
Q 046009 118 KEDVKLMADTGLD--AYRFSISWSRLIPNGRG--PVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWIN 193 (398)
Q Consensus 118 ~eDi~l~~~lG~~--~~R~sI~Wsri~P~g~g--~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~ 193 (398)
.+-++.+++.|+. ++=+++.|..- .+.- .+|.+.+.-.+++|+.|+++|++.++.++ |.
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~--~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~----------- 89 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDG--YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PY----------- 89 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccC--CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hh-----------
Confidence 3445555554443 45555555432 1223 45555555567999999999999998774 32
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEEEccCchhh
Q 046009 194 QTIVQDFTAYANVCFREFGDRVSYWTTVNEPNAF 227 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~~ 227 (398)
+.+.|.+..+......| ---+|+=+|||...
T Consensus 90 --v~~w~~~~~~~~~~~~G-vdg~w~D~~E~~~~ 120 (265)
T cd06589 90 --IREWWAEVVKKLLVSLG-VDGFWTDMGEPSPG 120 (265)
T ss_pred --HHHHHHHHHHHhhccCC-CCEEeccCCCCCcC
Confidence 14555554444322222 23466889999754
No 190
>PRK10658 putative alpha-glucosidase; Provisional
Probab=25.32 E-value=4.3e+02 Score=29.41 Aligned_cols=103 Identities=17% Similarity=0.255 Sum_probs=61.4
Q ss_pred HHHHHHcCCC--ceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCC---CCcHhHHhh---h----
Q 046009 121 VKLMADTGLD--AYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHY---DLPQALEDE---Y---- 188 (398)
Q Consensus 121 i~l~~~lG~~--~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~---d~P~~l~~~---~---- 188 (398)
++.+++.|+. ++-+.+.|.+-.--+.-.+|++.+---++||++|++.|++.++.+.-+ +.|..-+.+ |
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~ 368 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKR 368 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEEC
Confidence 4666666664 566677775421001223444444345689999999999998876532 222221111 0
Q ss_pred ------------C-----CCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCch
Q 046009 189 ------------G-----GWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPN 225 (398)
Q Consensus 189 ------------g-----Gw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 225 (398)
| .++||+..+.|.+..+.+.+ .| ---+|.=+||+.
T Consensus 369 ~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~G-vdgfw~D~gE~~ 420 (665)
T PRK10658 369 PDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MG-VDCFKTDFGERI 420 (665)
T ss_pred CCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cC-CcEEEecCCcee
Confidence 1 15799999999888887654 34 223566778863
No 191
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.10 E-value=72 Score=33.40 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=37.9
Q ss_pred cHHHHHHHHHcCCCceeecccccccccCC---CCCCChhhhHHHHHHHHHHHHCCCe-EEEEecCCCCc
Q 046009 117 YKEDVKLMADTGLDAYRFSISWSRLIPNG---RGPVNPKGLQYYNSLINELISHGIQ-PHVTLHHYDLP 181 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~Wsri~P~g---~g~~n~~~~~~Y~~~i~~l~~~GI~-p~vtL~H~d~P 181 (398)
-+|.+++|+++|++.+-+++ .-.-|+- -+.. ...+-..+.++.+++.|++ .-++|. +++|
T Consensus 151 t~e~l~~L~~~G~~rvsiGv--QS~~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli-~GlP 214 (453)
T PRK13347 151 TAEMLQALAALGFNRASFGV--QDFDPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLI-YGLP 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECC--CCCCHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE-EeCC
Confidence 47889999999999555555 2222221 1111 1245677899999999997 445553 4555
No 192
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=24.82 E-value=4.5e+02 Score=26.98 Aligned_cols=95 Identities=20% Similarity=0.210 Sum_probs=53.5
Q ss_pred cccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEE-EecCCCCcHhHHhhhCCC
Q 046009 113 GYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHV-TLHHYDLPQALEDEYGGW 191 (398)
Q Consensus 113 ~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~v-tL~H~d~P~~l~~~~gGw 191 (398)
..-...+-++.++++|++.+=+ ....+.|-+ -...+. =...+++-+.|.++||++.. +..-+..|.+ +.||.
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~--~~~dl~P~~-~~~~e~-~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~l 102 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTF--HDDDLIPFG-APPQER-DQIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGF 102 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEe--cccccCCCC-CChhHH-HHHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCC
Confidence 3345688899999999998853 333455542 111111 12366778889999999654 4432322333 22678
Q ss_pred CChh--hHHHHHHHHHH---HHHHhCCC
Q 046009 192 INQT--IVQDFTAYANV---CFREFGDR 214 (398)
Q Consensus 192 ~~~~--~~~~F~~ya~~---~~~~fgd~ 214 (398)
.+++ +.+.-.++.+. +++.+|-.
T Consensus 103 as~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 103 TSNDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 7754 33332333332 36667653
No 193
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=24.70 E-value=99 Score=32.96 Aligned_cols=55 Identities=25% Similarity=0.525 Sum_probs=45.6
Q ss_pred CcCCccccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEE-ecCC
Q 046009 108 DIASDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVT-LHHY 178 (398)
Q Consensus 108 ~~a~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vt-L~H~ 178 (398)
-.|+|-+-.+++-|+.+++.|++++ |+|. |.+.. +++|+++-++||..+.| +-||
T Consensus 458 v~ASDAFFPF~D~i~~aA~aGi~aI--------IqPG--GSirD------~eVI~aAde~giaMvfTg~RhF 513 (515)
T COG0138 458 VLASDAFFPFPDGIDAAAKAGIKAI--------IQPG--GSIRD------QEVIAAADEHGIAMVFTGVRHF 513 (515)
T ss_pred EEeecccCCCcchHHHHHHcCCeEE--------ECCC--Ccccc------HHHHHHHHhcCcEEEEcccccc
Confidence 3589999999999999999999987 8888 45543 47899999999998887 3344
No 194
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=24.66 E-value=2.8e+02 Score=28.82 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=53.3
Q ss_pred cHHHHHHHHHcCCCceeecc-ccc-ccccC-CCCCCChhhhHHHHHHHHHHHHCCCeEE-EEecCCCCcHhHHhhhCCCC
Q 046009 117 YKEDVKLMADTGLDAYRFSI-SWS-RLIPN-GRGPVNPKGLQYYNSLINELISHGIQPH-VTLHHYDLPQALEDEYGGWI 192 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI-~Ws-ri~P~-g~g~~n~~~~~~Y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~~gGw~ 192 (398)
-+|.+++|+++|++.+-+++ +=+ ++... +++. + .+-..+.|+.+++.|+..+ ++|. +++|. .
T Consensus 140 t~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~-~---~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~---------q 205 (430)
T PRK08208 140 TAEKLALLAARGVNRLSIGVQSFHDSELHALHRPQ-K---RADVHQALEWIRAAGFPILNIDLI-YGIPG---------Q 205 (430)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHhCCCC-C---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------C
Confidence 36889999999999666666 321 22222 2222 3 4567789999999999864 5553 45563 2
Q ss_pred ChhhHHHHHHHHHHHHHHhC-CCceeEEEccCch
Q 046009 193 NQTIVQDFTAYANVCFREFG-DRVSYWTTVNEPN 225 (398)
Q Consensus 193 ~~~~~~~F~~ya~~~~~~fg-d~V~~w~t~NEP~ 225 (398)
+ .+.|.+=.+.+.+ ++ +.+..+...=||+
T Consensus 206 t---~e~~~~~l~~~~~-l~~~~is~y~L~~~~~ 235 (430)
T PRK08208 206 T---HASWMESLDQALV-YRPEELFLYPLYVRPL 235 (430)
T ss_pred C---HHHHHHHHHHHHh-CCCCEEEEccccccCC
Confidence 2 3444444444443 33 4555554444444
No 195
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=24.59 E-value=2.2e+02 Score=30.13 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=39.9
Q ss_pred cHHHHHHHHHcCCCceeeccc-c-cccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCc
Q 046009 117 YKEDVKLMADTGLDAYRFSIS-W-SRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLP 181 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~-W-sri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P 181 (398)
-+|-+++|+++|++.+-++++ = .++...=....+ .+-..+.|+.++++||.+.+.+- +++|
T Consensus 286 d~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K~~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P 348 (497)
T TIGR02026 286 DADILHLYRRAGLVHISLGTEAAAQATLDHFRKGTT---TSTNKEAIRLLRQHNILSEAQFI-TGFE 348 (497)
T ss_pred CHHHHHHHHHhCCcEEEEccccCCHHHHHHhcCCCC---HHHHHHHHHHHHHCCCcEEEEEE-EECC
Confidence 356689999999998888773 1 122211011223 44577899999999999877654 3444
No 196
>PRK01060 endonuclease IV; Provisional
Probab=24.28 E-value=3.3e+02 Score=25.90 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=36.7
Q ss_pred cCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeE
Q 046009 115 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQP 171 (398)
Q Consensus 115 ~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p 171 (398)
..+++-++.++++|++.+-+.+.-++.... +.++.+. .+++-+.+.++|++.
T Consensus 12 ~~~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~~~---~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 12 GGLEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEELN---IEAFKAACEKYGISP 63 (281)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCHHH---HHHHHHHHHHcCCCC
Confidence 337888999999999999997765554322 3445443 445556677999984
No 197
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=24.23 E-value=6.7e+02 Score=24.84 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCeEEEEecCC---CCcHhHHhh--------------h--------CC---CCChhhHHHHHHHHHHHH
Q 046009 157 YNSLINELISHGIQPHVTLHHY---DLPQALEDE--------------Y--------GG---WINQTIVQDFTAYANVCF 208 (398)
Q Consensus 157 Y~~~i~~l~~~GI~p~vtL~H~---d~P~~l~~~--------------~--------gG---w~~~~~~~~F~~ya~~~~ 208 (398)
.+++|++|++.|+++++.+.-+ +.+....+. | ++ ++||+..+.|.+-.+...
T Consensus 73 p~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 152 (317)
T cd06594 73 LDELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEML 152 (317)
T ss_pred HHHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHh
Confidence 4577888888888877766533 223221110 0 11 568999999988877665
Q ss_pred HHhCCCce-eEEEccCch
Q 046009 209 REFGDRVS-YWTTVNEPN 225 (398)
Q Consensus 209 ~~fgd~V~-~w~t~NEP~ 225 (398)
...| |+ +|.=+||+.
T Consensus 153 ~~~G--vdg~w~D~~E~~ 168 (317)
T cd06594 153 LDLG--LSGWMADFGEYL 168 (317)
T ss_pred hhcC--CcEEEecCCCCC
Confidence 4443 44 468899964
No 198
>PHA02152 hypothetical protein
Probab=23.90 E-value=45 Score=26.79 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=24.4
Q ss_pred hcCC-CCCCCCCCcccccccccCccCCCCCcCCccccCcHHHHHHHHHc
Q 046009 80 VEGA-ANEDGRAPSIWDTFTHAGNVHDNGDIASDGYHKYKEDVKLMADT 127 (398)
Q Consensus 80 ~EG~-~~~~gk~~s~WD~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~l 127 (398)
|||+ |.+.|+...-|-.|...|+. -|++|.+.|+.+
T Consensus 42 v~g~~~g~~~~~~~ew~~fissgr~------------~~~~dy~km~~i 78 (96)
T PHA02152 42 VNGARFGEENKPVAEWFYFISSGRV------------YFKEDYDKMATI 78 (96)
T ss_pred hcccchhhcCCchhhhhhhhhcchh------------hHHhhHHHHHHH
Confidence 4665 44667777788887666653 367888888753
No 199
>PTZ00445 p36-lilke protein; Provisional
Probab=23.85 E-value=1.1e+02 Score=29.29 Aligned_cols=51 Identities=20% Similarity=0.362 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCcHhHHh-hhCCCCChh---------hHHHHHHHHHHHHH
Q 046009 155 QYYNSLINELISHGIQPHVTLHHYDLPQALED-EYGGWINQT---------IVQDFTAYANVCFR 209 (398)
Q Consensus 155 ~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~-~~gGw~~~~---------~~~~F~~ya~~~~~ 209 (398)
+--+.+++.|++.||+.+++= ||. -+.+ --|||.++. ..+.|..+...+-+
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D--~Dn--TlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASD--FDL--TMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEec--chh--hhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 345678899999999998763 222 2222 238999997 45556666555544
No 200
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=23.79 E-value=54 Score=20.21 Aligned_cols=15 Identities=27% Similarity=0.594 Sum_probs=11.8
Q ss_pred HHHHHHHHHHCCCeE
Q 046009 157 YNSLINELISHGIQP 171 (398)
Q Consensus 157 Y~~~i~~l~~~GI~p 171 (398)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 457778888889887
No 201
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=23.32 E-value=2.4e+02 Score=27.25 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=31.0
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHH
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELI 165 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~ 165 (398)
+.-.++||++.+++|++.+-++.. +.+|.+|.+ ..++++....
T Consensus 72 ~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~---~le~Li~aA~ 114 (241)
T COG3142 72 LEIMLEDIRLARELGVQGVVLGAL------TADGNIDMP---RLEKLIEAAG 114 (241)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHH---HHHHHHHHcc
Confidence 444789999999999999999864 235888854 4455555443
No 202
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=23.18 E-value=3.7e+02 Score=25.60 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=37.2
Q ss_pred cCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHC-CCeEEE
Q 046009 115 HKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISH-GIQPHV 173 (398)
Q Consensus 115 ~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~-GI~p~v 173 (398)
..+++-+++++++|++.+=+.+......+. ...+.+ ..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~--~~~~~~---~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLS--RPLKKE---RAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCC--CCCCHH---HHHHHHHHHHHcCCCcEEE
Confidence 678999999999999999888866554433 112333 456667777777 666544
No 203
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=22.93 E-value=4.1e+02 Score=25.73 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=47.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhCCCceeEEEccCch
Q 046009 146 RGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFGDRVSYWTTVNEPN 225 (398)
Q Consensus 146 ~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 225 (398)
+|++|.+ -++++++.+.+.|+..++.+-+- |-...-+.+...+..+.+.+.-+++++.+.-....+
T Consensus 13 ~g~iD~~---~~~~~i~~l~~~Gv~Gi~~~Gst-----------GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s 78 (285)
T TIGR00674 13 DGSVDFA---ALEKLIDFQIENGTDAIVVVGTT-----------GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNA 78 (285)
T ss_pred CCCcCHH---HHHHHHHHHHHcCCCEEEECccC-----------cccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCcc
Confidence 5899965 47799999999999999887542 211222355677777888888888888887665554
Q ss_pred h
Q 046009 226 A 226 (398)
Q Consensus 226 ~ 226 (398)
+
T Consensus 79 ~ 79 (285)
T TIGR00674 79 T 79 (285)
T ss_pred H
Confidence 4
No 204
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=22.44 E-value=6.9e+02 Score=24.23 Aligned_cols=91 Identities=16% Similarity=0.180 Sum_probs=60.9
Q ss_pred cHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhh
Q 046009 117 YKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTI 196 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~ 196 (398)
..+-++..++.|.. ++.+|+.+--.|. .+..+ .+++.++++.+.+.|..- +.|. |- .|...|.
T Consensus 116 ~~~~v~~ak~~G~~-v~~~i~~~f~~~~-~~~~~---~~~~~~~~~~~~~~Ga~~-i~l~---------DT-~G~~~P~- 178 (274)
T cd07938 116 FEPVAELAKAAGLR-VRGYVSTAFGCPY-EGEVP---PERVAEVAERLLDLGCDE-ISLG---------DT-IGVATPA- 178 (274)
T ss_pred HHHHHHHHHHCCCe-EEEEEEeEecCCC-CCCCC---HHHHHHHHHHHHHcCCCE-EEEC---------CC-CCccCHH-
Confidence 44457899999985 7777776654566 46666 668999999999999864 3442 22 5666654
Q ss_pred HHHHHHHHHHHHHHhCCCceeEEEccCchh
Q 046009 197 VQDFTAYANVCFREFGDRVSYWTTVNEPNA 226 (398)
Q Consensus 197 ~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~ 226 (398)
...++.+.+.+++++..-.+.+.|-..+
T Consensus 179 --~v~~lv~~l~~~~~~~~i~~H~Hnd~Gl 206 (274)
T cd07938 179 --QVRRLLEAVLERFPDEKLALHFHDTRGQ 206 (274)
T ss_pred --HHHHHHHHHHHHCCCCeEEEEECCCCCh
Confidence 5666677777777664445566666544
No 205
>PRK12465 xylose isomerase; Provisional
Probab=22.36 E-value=5.9e+02 Score=26.82 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHH----HHHHCCCeEE-EEecCCCCcHhHHhhhCCCC
Q 046009 118 KEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLIN----ELISHGIQPH-VTLHHYDLPQALEDEYGGWI 192 (398)
Q Consensus 118 ~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~----~l~~~GI~p~-vtL~H~d~P~~l~~~~gGw~ 192 (398)
+.-++.+.+||+..|-|-= ..|.|+|. . ..+..+..+++++ .+.+-||+.. +|..=|..|.... |+.+
T Consensus 92 daaFEf~~kLG~~~~~FHD--~D~~Peg~-s-~~E~~~nld~iv~~~k~~~~~tGikllw~TaNlFs~prf~~---GA~T 164 (445)
T PRK12465 92 DAAFEFFTKLGVPYYCFHD--IDLAPDAD-D-IGEYESNLKHMVGIAKQRQADTGIKLLWGTANLFSHPRYMN---GAST 164 (445)
T ss_pred HHHHHHHHHhCCCeeeccc--cccCCCCC-C-HHHHHHHHHHHHHHHHHHhhhhCceeeeeccccccCccccC---CcCC
Confidence 3346888999999887632 23778852 1 2222233444444 4567799865 4555678887642 8899
Q ss_pred Chh
Q 046009 193 NQT 195 (398)
Q Consensus 193 ~~~ 195 (398)
||+
T Consensus 165 nPD 167 (445)
T PRK12465 165 NPD 167 (445)
T ss_pred CCC
Confidence 887
No 206
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=21.93 E-value=1e+02 Score=29.26 Aligned_cols=60 Identities=7% Similarity=-0.001 Sum_probs=38.8
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEE
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVT 174 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vt 174 (398)
..+++.-+++.+.+|.+.+++........+. ..+.-+..++.++++.+.+.++||+..+=
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTP-PNVIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 4456667899999999999986432211111 11111234667888889999999976554
No 207
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=21.91 E-value=2.5e+02 Score=27.68 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChhhHHHHHHHHHHHHHHhC
Q 046009 156 YYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQTIVQDFTAYANVCFREFG 212 (398)
Q Consensus 156 ~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~~~~~F~~ya~~~~~~fg 212 (398)
...+.|..|+++|+++++++--++-. ....+++..+.|++....+++.+|
T Consensus 61 ~~~~~i~~~q~~G~KVllSiGG~~~~-------~~~~~~~~~~~fa~sl~~~~~~~g 110 (312)
T cd02871 61 EFKADIKALQAKGKKVLISIGGANGH-------VDLNHTAQEDNFVDSIVAIIKEYG 110 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCc-------cccCCHHHHHHHHHHHHHHHHHhC
Confidence 45677889999999999998543311 012455667777777777777776
No 208
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=21.80 E-value=5.7e+02 Score=25.10 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=59.9
Q ss_pred CcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEecCCCCcHhHHhhhCCCCChh
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTLHHYDLPQALEDEYGGWINQT 195 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~H~d~P~~l~~~~gGw~~~~ 195 (398)
+.++-++..++.|+. ++.+|+=+---|. .|..+ .+++.++++++.+.|..- +.|. |- .|..+|.
T Consensus 121 ~~~~~v~~ak~~g~~-v~~~i~~~~~~~~-~~~~~---~~~~~~~~~~~~~~G~d~-i~l~---------DT-~G~~~P~ 184 (287)
T PRK05692 121 RFEPVAEAAKQAGVR-VRGYVSCVLGCPY-EGEVP---PEAVADVAERLFALGCYE-ISLG---------DT-IGVGTPG 184 (287)
T ss_pred HHHHHHHHHHHcCCE-EEEEEEEEecCCC-CCCCC---HHHHHHHHHHHHHcCCcE-EEec---------cc-cCccCHH
Confidence 455668888999974 6666654433355 46666 568999999999999874 4543 32 5666654
Q ss_pred hHHHHHHHHHHHHHHhCCCceeEEEccCch
Q 046009 196 IVQDFTAYANVCFREFGDRVSYWTTVNEPN 225 (398)
Q Consensus 196 ~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~ 225 (398)
...++++.+.+++++.--.+...|-..
T Consensus 185 ---~v~~lv~~l~~~~~~~~i~~H~Hn~~G 211 (287)
T PRK05692 185 ---QVRAVLEAVLAEFPAERLAGHFHDTYG 211 (287)
T ss_pred ---HHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 566677777788876333445555543
No 209
>PRK06256 biotin synthase; Validated
Probab=21.43 E-value=1.5e+02 Score=29.34 Aligned_cols=57 Identities=19% Similarity=0.255 Sum_probs=38.9
Q ss_pred CcHHHHHHHHHcCCCceeecccccc-cccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEe
Q 046009 116 KYKEDVKLMADTGLDAYRFSISWSR-LIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTL 175 (398)
Q Consensus 116 ~y~eDi~l~~~lG~~~~R~sI~Wsr-i~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL 175 (398)
.-+|.++.|+++|++.+-++++=++ +.+.-... ..++.+.+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~---~t~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTT---HTYEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCC---CCHHHHHHHHHHHHHcCCeeccCe
Confidence 5578899999999998888762132 33331111 125567788999999999865543
No 210
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=21.02 E-value=2.6e+02 Score=21.88 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEEe
Q 046009 122 KLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVTL 175 (398)
Q Consensus 122 ~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL 175 (398)
+.++.+|+..+|-| . +..|.+-+.++++.|+ .|....+|.
T Consensus 27 ~~~~~~G~~~iRGS--------s-----~rgg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS--------S-----SRGGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC--------C-----CCcHHHHHHHHHHHHH-CCCeEEEeC
Confidence 67889999999999 2 2345677889999999 777777765
No 211
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.96 E-value=1.3e+02 Score=28.74 Aligned_cols=61 Identities=7% Similarity=0.054 Sum_probs=39.5
Q ss_pred ccCcHHHHHHHHHcCCCceeecccccccccCCC-CCCChhhhHHHHHHHHHHHHCCCeEEEEec
Q 046009 114 YHKYKEDVKLMADTGLDAYRFSISWSRLIPNGR-GPVNPKGLQYYNSLINELISHGIQPHVTLH 176 (398)
Q Consensus 114 y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~-g~~n~~~~~~Y~~~i~~l~~~GI~p~vtL~ 176 (398)
-.++++-+++++++|.+.+++.-. +..+... .+.-...++.++++.+.+.++||...+=.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~ 154 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIM 154 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeC
Confidence 345677799999999999998521 1111110 111123456777888999999998877543
No 212
>PRK05660 HemN family oxidoreductase; Provisional
Probab=20.44 E-value=2.4e+02 Score=28.66 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=57.9
Q ss_pred cHHHHHHHHHcCCCceeecc-ccc-ccccCCCCCCChhhhHHHHHHHHHHHHCCCeEE-EEecCCCCcHhHHhhhCCCCC
Q 046009 117 YKEDVKLMADTGLDAYRFSI-SWS-RLIPNGRGPVNPKGLQYYNSLINELISHGIQPH-VTLHHYDLPQALEDEYGGWIN 193 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI-~Ws-ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~-vtL~H~d~P~~l~~~~gGw~~ 193 (398)
-++.++.|+++|++-+-++| +=+ ++... -|... ..+-..+.++.+++.|++++ ++|. +++|.
T Consensus 106 ~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~-l~r~~--~~~~~~~ai~~~~~~G~~~v~~dli-~Glpg----------- 170 (378)
T PRK05660 106 EADRFVGYQRAGVNRISIGVQSFSEEKLKR-LGRIH--GPDEAKRAAKLAQGLGLRSFNLDLM-HGLPD----------- 170 (378)
T ss_pred CHHHHHHHHHcCCCEEEeccCcCCHHHHHH-hCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 35899999999999666666 222 12211 12211 24456678899999999875 5564 56663
Q ss_pred hhhHHHHHHHHHHHHHHhCCCceeEEEccCchh
Q 046009 194 QTIVQDFTAYANVCFREFGDRVSYWTTVNEPNA 226 (398)
Q Consensus 194 ~~~~~~F~~ya~~~~~~fgd~V~~w~t~NEP~~ 226 (398)
++.+.+.+-.+.+.+.=-+++..+...=||+.
T Consensus 171 -qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 -QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred -CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23455666666665544467777766666653
No 213
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=20.24 E-value=1.2e+02 Score=31.81 Aligned_cols=61 Identities=13% Similarity=0.321 Sum_probs=38.4
Q ss_pred cHHHHHHHHHcCCCceeeccc-cc-ccccCCCCCCChhhhHHHHHHHHHHHHCCC-eEEEEecCCCCc
Q 046009 117 YKEDVKLMADTGLDAYRFSIS-WS-RLIPNGRGPVNPKGLQYYNSLINELISHGI-QPHVTLHHYDLP 181 (398)
Q Consensus 117 y~eDi~l~~~lG~~~~R~sI~-Ws-ri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI-~p~vtL~H~d~P 181 (398)
-+|.+++|+++|++.+.++++ =+ ++... -+.. ...+-..+.++.+++.|+ .+.++|. +++|
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~-l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli-~GlP 213 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKA-VNRI--QPFEFTFALVEAARELGFTSINIDLI-YGLP 213 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHH-hCCC--CCHHHHHHHHHHHHHcCCCcEEEEEE-ccCC
Confidence 478899999999997777662 21 11111 1111 124467788999999999 4555553 4555
No 214
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=20.03 E-value=2.1e+02 Score=25.98 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=46.9
Q ss_pred CcCCccccCcHHHHHHHHHcCCCceeecccccccccCCCCCCChhhhHHHHHHHHHHHHCCCeEEEE
Q 046009 108 DIASDGYHKYKEDVKLMADTGLDAYRFSISWSRLIPNGRGPVNPKGLQYYNSLINELISHGIQPHVT 174 (398)
Q Consensus 108 ~~a~d~y~~y~eDi~l~~~lG~~~~R~sI~Wsri~P~g~g~~n~~~~~~Y~~~i~~l~~~GI~p~vt 174 (398)
.+|.|.+-.-...+..+..+.++.++++.++-+-... |.......+.+++.++..|++++++
T Consensus 148 ~ialddfg~~~~~~~~l~~l~~d~iKld~~~~~~~~~-----~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 148 RIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQT-----DPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred EEEEeCCCCcHHHHHHHHhCCCCeEEECHHHHhhhcc-----ChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 4677777666778889999999999998887653333 2333557889999999999998866
Done!