BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046012
         (244 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2B9E|A Chain A, Human Nsun5 Protein
          Length = 309

 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 37/93 (39%), Gaps = 19/93 (20%)

Query: 169 PRYVRVNTLKMDVDSAVLELGKQ-FVVQKXXXXXXXXXXXXG------------------ 209
           PR+VRVNTLK   D  V    +Q F  Q             G                  
Sbjct: 11  PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 70

Query: 210 CDLHDHPLIVNGCVFLQGKASSMVAAALAPKPG 242
            DLH+HPL   G + LQ +AS + A  L P PG
Sbjct: 71  TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPG 103


>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
           Protein From Pyrococcus Horikoshii
          Length = 315

 Score = 34.7 bits (78), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKXX-XXXXXXXXXXGCDLHDHPLIVNGCVF 224
           P PR  RVNTLK+ V   V  L K+ F  ++                +   P  + G ++
Sbjct: 42  PLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIY 101

Query: 225 LQGKASSMVAAALAPKPG 242
           +Q  +S     AL PKPG
Sbjct: 102 IQEASSXYPPVALDPKPG 119


>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
          Length = 450

 Score = 30.4 bits (67), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 172 VRVNTLKMDVDSAVLELGKQFVVQKXXXXXXXXXXXXGCDLHDHPLIVN-GCVFLQGKAS 230
           +RVNTLK +V+  + EL +  V               G    D     N G + +Q +AS
Sbjct: 189 IRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEAS 248

Query: 231 SMVAAALAPKPG 242
           ++ +  L PKPG
Sbjct: 249 AVASIVLDPKPG 260


>pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli
           Arsenite-Translocating Atpase
 pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli
           Arsenite-Translocating Atpase In Complex With
           Mg-Adp-Alf3
 pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli
           Arsenite-Translocating Atpase
 pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli
           Arsenite-Translocating Atpase
 pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase In Complex With Amp-Pnp
 pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
           Translocating Atpase In Complex With Amp-Pnp
          Length = 589

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 20/74 (27%)

Query: 101 WKRQEELVYILTYDI-------LFGQEISLVGDAEKFLMLHKGAIQSALARLLVRNKVKS 153
           W+R++E +  L  D+       LF Q +++VG              SAL+RLL    V S
Sbjct: 253 WEREQEALANLPADLAGLPTDTLFLQPVNMVG-------------VSALSRLLSTQPVAS 299

Query: 154 IEDLMALYQTPDVP 167
                 L Q PD+P
Sbjct: 300 PSSDEYLQQRPDIP 313


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,663,622
Number of Sequences: 62578
Number of extensions: 177082
Number of successful extensions: 500
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 5
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)