BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046012
(244 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2
Length = 429
Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 110/211 (52%), Gaps = 26/211 (12%)
Query: 56 GSIKSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GSIK LVYS + +N K +ALVC+T ++ +++ V+ SA +L ++ K + L +L Y++
Sbjct: 19 GSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVLVYEL 78
Query: 116 LFGQEISLVGDAEKFLM-LHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPK--PRYV 172
L G+ G K L+ H+ +++ LARL V V EDL+ + P PR+V
Sbjct: 79 LLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV 138
Query: 173 RVNTLKMDVDSAVLEL---------------------GKQFVVQKDDLVPDLLILPPGCD 211
RVNTLK D V GK F++ D L+P+LL+ P D
Sbjct: 139 RVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLL--DPLMPELLVFPAQTD 196
Query: 212 LHDHPLIVNGCVFLQGKASSMVAAALAPKPG 242
LH+HPL G + LQ +AS + A L P PG
Sbjct: 197 LHEHPLYRAGHLILQDRASCLPAMLLDPPPG 227
>sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2
Length = 465
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 108/209 (51%), Gaps = 22/209 (10%)
Query: 56 GSIKSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GS+K LVYS + +N K +ALVC+T ++ +++ V+ SA +L ++ K + L +L Y++
Sbjct: 19 GSLKGLVYSSNFQNLKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVLVYEL 78
Query: 116 LFGQEISLVGDAEKFLM-LHKGAIQSALARLLVRNKVKSIEDLMALYQTPD--VPKPRYV 172
L G+ G K L+ H+ +++ LARL V V EDL+ P PR+V
Sbjct: 79 LLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGQAYQVPRFV 138
Query: 173 RVNTLKMDVDSAVLELGKQ-FVVQ-KDDLVPDL-----------------LILPPGCDLH 213
RVNTLK + A+ +Q F Q + + DL L+ P DLH
Sbjct: 139 RVNTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLH 198
Query: 214 DHPLIVNGCVFLQGKASSMVAAALAPKPG 242
+HPL G + LQ KAS + A L+P PG
Sbjct: 199 EHPLYRAGHLILQDKASCLPAMLLSPPPG 227
>sp|O14039|YEY6_SCHPO Putative methyltransferase C2C4.06c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC2C4.06c PE=3 SV=3
Length = 460
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 108/198 (54%), Gaps = 21/198 (10%)
Query: 56 GSIKSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
GSIK L ++ + K T+ALVC+TLK+ ++ +++ + +L + K +E L +L +D+
Sbjct: 19 GSIKQLAFNSKKHDPKRTYALVCETLKYKPVLDEIIARSELLVLEKKLKENLARVLVHDL 78
Query: 116 LF---GQEISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYV 172
L G IS G ++ ++ HK + + +L V+ VKS E+L + P V PR++
Sbjct: 79 LMSKRGLSIS-NGPIKECILRHKTRLNAEFVKLKVKKGVKSHEELA--LKNP-VSLPRWL 134
Query: 173 RVNTLK-----------MDVDSAVLELG-KQFVVQKDDLVPDLLILPPGCDLHDHPLIVN 220
R+NT+K +D S++ ELG +F + DD V +L+ + P + ++ L
Sbjct: 135 RINTIKSTKDEVLQGLGLDKVSSIEELGPDKFYI--DDCVENLIAIDPSFPIVENSLYKE 192
Query: 221 GCVFLQGKASSMVAAALA 238
G V +Q KAS AA LA
Sbjct: 193 GKVIIQDKASCFPAAVLA 210
>sp|P53972|YNC2_YEAST Uncharacterized protein YNL022C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YNL022C PE=1 SV=1
Length = 490
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 112/239 (46%), Gaps = 32/239 (13%)
Query: 36 REAAKVLRLVLRGDARRRAVGSIKSLVYSPSVK-----NKKATFALVCQTLKHLSIIKQV 90
R+A VL + + A+ R GS+++LV + N K +A++ K+ +++V
Sbjct: 5 RDATWVLEDIEKEAAKERISGSMQTLVLKSCKRYKLKSNPKHIYAVLDSCWKYKPYLEKV 64
Query: 91 LDSASILNSKWKRQEELVY-------ILTYDILFGQEISLVGDA--EKFLMLHKGAIQSA 141
+ A IL K++ + ++ + +L Q+ +G + +++ K + S
Sbjct: 65 MKKAHILEDIPKKKGKPLFSRLTLLLLCHDLLLSKQKRIQMGKHPIKDYVLKFKSPLHSE 124
Query: 142 LARLLVRNKVKSIEDL-MALYQTPDVPKPRYVRVNTLKM----DVDSAVLELGKQFVVQ- 195
+ +L ++ KV+ + +L ++ + D+P R++R+N LK + + + EL K+F ++
Sbjct: 125 MVKLKLKLKVRELSELVLSEDISNDLPPVRWIRINPLKCHPNGETEPVLAELRKKFTLKV 184
Query: 196 ------------KDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKPG 242
D+ +P+L + P + H L +G + +Q +AS A L P P
Sbjct: 185 DKWSELVPGSIYYDEFIPNLFGIHPSDKITAHELYKHGKIIIQDRASCFPAHILNPGPS 243
>sp|Q63ZY6|NSN5C_HUMAN Putative methyltransferase NSUN5C OS=Homo sapiens GN=NSUN5P2 PE=5
SV=2
Length = 315
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 200 VPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPK 240
+P+LL+ P DLH+HPL G + LQ +AS + A L P+
Sbjct: 1 MPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPR 41
>sp|P20021|CADA1_STAAU Probable cadmium-transporting ATPase OS=Staphylococcus aureus
GN=cadA PE=3 SV=1
Length = 727
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 19/86 (22%)
Query: 137 AIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQK 196
AI AL R + +SI LM + PK VR N G++ ++
Sbjct: 190 AISEALERFSMDRSRQSIRSLMDI-----APKEALVRRN-------------GQEIIIHV 231
Query: 197 DDL-VPDLLILPPGCDLHDHPLIVNG 221
DD+ V D++I+ PG + +IVNG
Sbjct: 232 DDIAVGDIMIVKPGEKIAMDGIIVNG 257
>sp|Q27533|YH2M_CAEEL Probable cation-transporting ATPase W08D2.5 OS=Caenorhabditis
elegans GN=W08D2.5 PE=2 SV=2
Length = 1256
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 143 ARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSA-VLELGKQFVVQKDDLVP 201
A L+V + SI +M +YQ + + +R+ ++ +S V+ G + + D LVP
Sbjct: 211 ASLIVILSLGSI--VMDVYQI----RTQEIRLRSMVHSTESVEVIREGTEMTIGSDQLVP 264
Query: 202 -DLLILPP-GCDLHDHPLIVNGCVF-----LQGKASSMVAAALA 238
D+L++PP GC + +++NG V L G++ + AL
Sbjct: 265 GDILLIPPHGCLMQCDSVLMNGTVIVNESVLTGESVPITKVALT 308
>sp|P37386|CADA2_STAAU Probable cadmium-transporting ATPase OS=Staphylococcus aureus
GN=cadA PE=3 SV=1
Length = 804
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 20/103 (19%)
Query: 122 SLVGD-AEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD 180
+++G+ AE +++ AI AL R + +SI LM + PK VR N
Sbjct: 251 AIIGEWAEASIVVILFAISEALERFSMDRARQSIRSLMDI-----APKEALVRRN----- 300
Query: 181 VDSAVLELGKQFVVQKDDL-VPDLLILPPGCDLHDHPLIVNGC 222
G++ ++ DD+ V D++I+ PG + +I+NG
Sbjct: 301 --------GQEIMIHVDDIAVGDIMIVKPGEKIAMDGIIINGV 335
>sp|Q4AAU6|MNMG_MYCHJ tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 /
NCTC 10110) GN=mnmG PE=3 SV=2
Length = 619
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 125 GDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALY--QTPDVPKPRYVRVNTLKMDVD 182
G E + ML A RL++RN I MA Y ++ + K Y+++ +D
Sbjct: 425 GTKEPYRML----TSRAEYRLILRNDNADIR--MAKYALKSGLISKKEYLKIKAKYAKID 478
Query: 183 SAVLELGKQFVVQKDDL 199
+LEL K+FV KD+L
Sbjct: 479 RKILELSKEFVSPKDEL 495
>sp|Q602E7|MNMG_MYCH2 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Mycoplasma hyopneumoniae (strain 232) GN=mnmG PE=3
SV=1
Length = 619
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 125 GDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALY--QTPDVPKPRYVRVNTLKMDVD 182
G E + ML A RL++RN I MA Y ++ + K Y+++ +D
Sbjct: 425 GTKEPYRML----TSRAEYRLILRNDNADIR--MAKYALKSGLISKKEYLKIKAKYAKID 478
Query: 183 SAVLELGKQFVVQKDDL 199
+LEL K+FV KD+L
Sbjct: 479 RKILELSKEFVSPKDEL 495
>sp|Q4A909|MNMG_MYCH7 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Mycoplasma hyopneumoniae (strain 7448) GN=mnmG PE=3
SV=2
Length = 619
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 125 GDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALY--QTPDVPKPRYVRVNTLKMDVD 182
G E + ML A RL++RN I MA Y ++ + K Y+++ +D
Sbjct: 425 GTKEPYRML----TSRAEYRLILRNDNADIR--MAKYALKSGLISKKEYLKIKAKYAKID 478
Query: 183 SAVLELGKQFVVQKDDL 199
+LEL K+FV KD+L
Sbjct: 479 RKILELSKEFVSPKDEL 495
>sp|Q8TXT2|RIBL_METKA FAD synthase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM
9639 / NBRC 100938) GN=ribL PE=3 SV=1
Length = 150
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 112 TYDILFGQEISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRY 171
+DIL ++ + +A K L ++ R+ E + L +TP VP+ +
Sbjct: 10 VFDILHPGHVAFLEEARKI-----AGKNGELVVVVARD-----ETVRRLKRTPIVPEEQR 59
Query: 172 VRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHD 214
VR+ + VD A+L + F + + PD+++L P D+ +
Sbjct: 60 VRMVSALKPVDRAILGHPRDFSITLKTVKPDVVVLGPDQDIDE 102
>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana
GN=At5g53840 PE=2 SV=1
Length = 444
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 76 LVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDIL----FGQEISLVGDAEKFL 131
L+C L HLS V SIL+++W+ +LV +L +D F + +S G F
Sbjct: 27 LICVILSHLSTKDAV--RTSILSTRWRNLWQLVPVLDFDSRELRSFSEFVSFAG---SFF 81
Query: 132 MLHKGA 137
LHK +
Sbjct: 82 YLHKDS 87
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,758,581
Number of Sequences: 539616
Number of extensions: 2934848
Number of successful extensions: 8194
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 8174
Number of HSP's gapped (non-prelim): 18
length of query: 244
length of database: 191,569,459
effective HSP length: 114
effective length of query: 130
effective length of database: 130,053,235
effective search space: 16906920550
effective search space used: 16906920550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)