Query 046012
Match_columns 244
No_of_seqs 212 out of 1421
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 13:34:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046012.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046012hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yxl_A PH0851 protein, 450AA l 100.0 3.3E-31 1.1E-35 245.0 16.7 204 31-243 10-261 (450)
2 1sqg_A SUN protein, FMU protei 100.0 3.8E-30 1.3E-34 236.4 18.4 204 32-244 5-249 (429)
3 3d3b_A Protein NUSB, N utiliza 99.6 5.4E-15 1.9E-19 115.9 13.1 111 32-146 9-132 (141)
4 1ixk_A Methyltransferase; open 99.6 1E-15 3.5E-20 135.0 8.8 103 138-244 12-121 (315)
5 1tzv_A NUSB protein, N utiliza 99.6 5E-15 1.7E-19 116.2 11.8 112 32-147 6-131 (142)
6 3r2d_A Protein NUSB, N utiliza 99.6 4.8E-15 1.6E-19 117.2 11.1 113 32-148 6-133 (149)
7 2b9e_A NOL1/NOP2/SUN domain fa 99.5 1.7E-14 5.7E-19 127.0 8.8 79 166-244 8-105 (309)
8 3m6w_A RRNA methylase; rRNA me 99.5 1.1E-14 3.9E-19 134.5 7.9 97 142-244 7-104 (464)
9 2frx_A Hypothetical protein YE 99.5 8.5E-15 2.9E-19 136.1 6.0 100 141-243 7-119 (479)
10 1eyv_A NUSB protein, N-utilizi 99.5 9E-14 3.1E-18 110.7 8.6 114 32-147 11-139 (156)
11 3ajd_A Putative methyltransfer 99.4 7.5E-13 2.6E-17 114.2 8.3 78 166-244 7-86 (274)
12 3m4x_A NOL1/NOP2/SUN family pr 99.3 7.1E-13 2.4E-17 122.3 5.5 91 143-244 14-108 (456)
13 4fzv_A Putative methyltransfer 98.5 9.7E-08 3.3E-12 85.4 5.3 92 148-244 30-151 (359)
14 1yb2_A Hypothetical protein TA 75.9 0.053 1.8E-06 45.6 -6.4 81 162-243 30-112 (275)
No 1
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}
Probab=99.97 E-value=3.3e-31 Score=245.00 Aligned_cols=204 Identities=16% Similarity=0.125 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHHHHHHccchhhhhhhcc-cccc-cCCCc-cCHHHHHHHHHHHHhcHHHHHHHHhhcccccchhh----h
Q 046012 31 AYFARREAAKVLRLVLRGDARRRAVGSI-KSLV-YSPSV-KNKKATFALVCQTLKHLSIIKQVLDSASILNSKWK----R 103 (244)
Q Consensus 31 ~~~~R~~A~~iL~~v~~~~~~~~~l~~l-~~l~-~~l~~-~dr~~~~~LvygvlR~~~~Ld~il~~~~~~~~~~~----~ 103 (244)
.+++|+.|+++|.+|..++.+++. .+ ..+. ..+++ +||+++++|||||+||+..||++|+++ ++++.. .
T Consensus 10 ~~~~R~~A~~~L~~v~~~~~~~~~--~l~~~~~~~~l~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~--~~~~~~~~~~~ 85 (450)
T 2yxl_A 10 IPPKGIRAIIEAIRLGEIIKPSQY--AKREAFKKHDVEEAWLNRVLTMIFYDIMKKQGLIDKVIKEI--VGVTPLILDPW 85 (450)
T ss_dssp CCHHHHHHHHHHHHHTTTSSSTHH--HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSSCGGGSCHH
T ss_pred cchHHHHHHHHHHHHHhcCCcHHH--HHHHHHHhccCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHh--ccCChhhcCHH
Confidence 457999999999999988877654 22 3343 45788 999999999999999999999999995 554422 4
Q ss_pred hHHHHHHHHHHHHhcCccccch-------hHHHHHHHhh----------------------------HHHHHHHHHHHH-
Q 046012 104 QEELVYILTYDILFGQEISLVG-------DAEKFLMLHK----------------------------GAIQSALARLLV- 147 (244)
Q Consensus 104 ~~~lLrv~~yqll~~~~~p~~a-------e~v~~v~r~~----------------------------~~l~~s~p~w~~- 147 (244)
++.+||+++|||+| ++|+++ |+|++++++. ..+++++|.|+.
T Consensus 86 ~~~iLrla~yell~--~ip~~~ain~~~~eaVelak~~~~~~~~~fvNgvL~~~~r~~~~~~~~~~~~~~~~~~P~w~~~ 163 (450)
T 2yxl_A 86 LRAALRVAVDIALF--HDPSSQTIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEYKPNPKNELEELEWKYLAPSWLIE 163 (450)
T ss_dssp HHHHHHHHHHHHHH--SCBCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCCCCCCSHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCchHHhccccHHHHHHHHhccccccccchHHHHHHHhhccccccchhhhhhhHhcCcHHHHH
Confidence 58899999999999 489875 6777776531 012456777766
Q ss_pred ----HcCCCCHHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cCceeecCCCCCeEEeCCCCCCCCchhhhcce
Q 046012 148 ----RNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHDHPLIVNGC 222 (244)
Q Consensus 148 ----~~g~~~~~~~~~~~~~~~~~~p~~lRVNtlk~s~e~~~~~L~~-g~~~~~~~~~p~~l~l~~~~~l~~~~~f~~G~ 222 (244)
.|| ++++++++ +.+..+||+++|||++|++++++.+.|++ |+.+.+++++|+++.+.++.++..++.|.+|+
T Consensus 164 ~~~~~~g-~~~~~~~~--a~~~~~~~~~~Rvn~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 240 (450)
T 2yxl_A 164 RVKGILG-DETEDFFR--SVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGK 240 (450)
T ss_dssp HHHHHHG-GGHHHHHH--HHHCCCCEEEEEECTTTCCHHHHHHHHHHTTCCEEECSSCTTEEEEESCCCTTSCHHHHTTS
T ss_pred HHHHHhh-HHHHHHHH--hcCCCCCCEEEEEcCCCCCHHHHHHHHHhCCccceecCccCceEEeCCCCCcccCchhhCce
Confidence 568 77888887 54305899999999999999999999988 99999999999999996556899999999999
Q ss_pred EEeechhhHHhHHhhCCCCCC
Q 046012 223 VFLQGKASSMVAAALAPKPGW 243 (244)
Q Consensus 223 ~~vQD~aSql~a~~L~p~pG~ 243 (244)
+++||.+||+++.+++++||+
T Consensus 241 ~~~qd~~s~l~~~~l~~~~g~ 261 (450)
T 2yxl_A 241 IIVQEEASAVASIVLDPKPGE 261 (450)
T ss_dssp EEECCHHHHHHHHHHCCCTTC
T ss_pred EEecCchhHHHHHhcCCCCcC
Confidence 999999999999999999986
No 2
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Probab=99.97 E-value=3.8e-30 Score=236.44 Aligned_cols=204 Identities=18% Similarity=0.181 Sum_probs=167.6
Q ss_pred hHHHHHHHHHHHHHHccchhhhhhhcccccccCCCccCHHHHHHHHHHHHhcHHHHHHHHhhcccccchhh----hhHHH
Q 046012 32 YFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWK----RQEEL 107 (244)
Q Consensus 32 ~~~R~~A~~iL~~v~~~~~~~~~l~~l~~l~~~l~~~dr~~~~~LvygvlR~~~~Ld~il~~~~~~~~~~~----~~~~l 107 (244)
|++|+.|+++|.++..++.+.+. .+......++++|++++++|||||+||+..||++|+++ ++++.. .++.+
T Consensus 5 ~~aR~~A~~~L~~~~~~~~~~~~--~l~~~~~~~~~~dr~~~~~lv~gvlr~~~~ld~~i~~~--~~~~~~~~~~~~~~i 80 (429)
T 1sqg_A 5 RNLRSMAAQAVEQVVEQGQSLSN--ILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKL--MARPMTGKQRTVHYL 80 (429)
T ss_dssp CCHHHHHHHHHHHHHHHCCCHHH--HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CSSCCCGGGHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCHHH--HHHHHHhhCCHHHHHHHHHHHHHHHHhHHHHHHHHHHh--cCCChhhcCHHHHHH
Confidence 57999999999999887755432 12222235788999999999999999999999999995 554322 46899
Q ss_pred HHHHHHHHHhcCccccch---hHHHHHHHhh-------------------HHH---------HHHHHHHHH-----HcCC
Q 046012 108 VYILTYDILFGQEISLVG---DAEKFLMLHK-------------------GAI---------QSALARLLV-----RNKV 151 (244)
Q Consensus 108 Lrv~~yqll~~~~~p~~a---e~v~~v~r~~-------------------~~l---------~~s~p~w~~-----~~g~ 151 (244)
||+++|||+|+ ++|+++ |+|++++++. ..+ ++++|.|+. .||
T Consensus 81 Lrl~~yel~~~-~~p~~~~ineaVelak~~~~~~~~~fvN~vL~~~~r~~~~~~~~~~~~~~~~~~p~w~~~~~~~~~g- 158 (429)
T 1sqg_A 81 IMVGLYQLLYT-RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP- 158 (429)
T ss_dssp HHHHHHHHHHC-CSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHTTSGGGGCSCHHHHHHHHHHCT-
T ss_pred HHHHHHHHhhC-CCCchHhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhcccccchhhhhhhcCcHHHHHHHHHHhh-
Confidence 99999999999 599986 8888876531 001 134677766 578
Q ss_pred CCHHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cCceeecCCCCCeEEeCCCCCCCCchhhhcceEEeechhh
Q 046012 152 KSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKAS 230 (244)
Q Consensus 152 ~~~~~~~~~~~~~~~~~p~~lRVNtlk~s~e~~~~~L~~-g~~~~~~~~~p~~l~l~~~~~l~~~~~f~~G~~~vQD~aS 230 (244)
++.+++++ +.+ .+||+++|||++|++++++.+.|.+ |+.+.+++++|+++++.++.++..++.|.+|.+++||++|
T Consensus 159 ~~~~~~~~--~~~-~~~~~~~Rvn~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s 235 (429)
T 1sqg_A 159 EQWQSIVE--ANN-QRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASA 235 (429)
T ss_dssp TTHHHHHH--HHT-SCCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTTCTTEEEESSCCCGGGSTTGGGTSEEECCHHH
T ss_pred HHHHHHHH--hCC-CCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCEEEECCCCCcccChHHhCCCeEeeCHHH
Confidence 66778887 656 6999999999999999999999988 9999999999999999877789999999999999999999
Q ss_pred HHhHHhhCCCCCCC
Q 046012 231 SMVAAALAPKPGWK 244 (244)
Q Consensus 231 ql~a~~L~p~pG~~ 244 (244)
|+++.+++|+||++
T Consensus 236 ~~~~~~l~~~~g~~ 249 (429)
T 1sqg_A 236 QGCMTWLAPQNGEH 249 (429)
T ss_dssp HTHHHHHCCCTTCE
T ss_pred HHHHHHcCCCCcCe
Confidence 99999999999863
No 3
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=99.62 E-value=5.4e-15 Score=115.86 Aligned_cols=111 Identities=9% Similarity=-0.007 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHHccch-hhhhhhcccccc-cCCCccCHHHHHHHHHHHHhcHHHHHHHHhhcccccchhh----hhH
Q 046012 32 YFARREAAKVLRLVLRGDA-RRRAVGSIKSLV-YSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWK----RQE 105 (244)
Q Consensus 32 ~~~R~~A~~iL~~v~~~~~-~~~~l~~l~~l~-~~l~~~dr~~~~~LvygvlR~~~~Ld~il~~~~~~~~~~~----~~~ 105 (244)
..+|+.|+++|.++..++. +.+.+. ..+. ..++..|++|+++|||||+||+..||++|+++ ++.+.. .++
T Consensus 9 ~~aR~~A~~~L~~~~~~~~~~~~~~~--~~~~~~~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~--l~~~l~rl~~~~r 84 (141)
T 3d3b_A 9 RRARECAVQALYSWQLSQNDIADVEY--QFLAEQDVKDVDVLYFRELLAGVATNTAYLDGLMKPY--LSRLLEELGQVEK 84 (141)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHHHHH--HHHHHSCCTTSCHHHHHHHHHHHHHTHHHHHHHHGGG--GTTCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHH--HHHHhccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHH--cCCCHHHcCHHHH
Confidence 4689999999999977664 334322 2233 45778999999999999999999999999995 654322 469
Q ss_pred HHHHHHHHHHHhcCccccch---hHHHHHHHhh----HHHHHHHHHHH
Q 046012 106 ELVYILTYDILFGQEISLVG---DAEKFLMLHK----GAIQSALARLL 146 (244)
Q Consensus 106 ~lLrv~~yqll~~~~~p~~a---e~v~~v~r~~----~~l~~s~p~w~ 146 (244)
++||+|+|||+|++++|+++ |+|++++++. .++.+++.+-+
T Consensus 85 ~iLrla~yEll~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~i 132 (141)
T 3d3b_A 85 AVLRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDKA 132 (141)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHCCCCchHHHHHHHHHH
Confidence 99999999999998899997 9999998862 34556665533
No 4
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38
Probab=99.61 E-value=1e-15 Score=135.01 Aligned_cols=103 Identities=25% Similarity=0.368 Sum_probs=88.5
Q ss_pred HHHHHHHHH-----HHcCCCCHHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cCceeecCCCCCeEEeCC-CC
Q 046012 138 IQSALARLL-----VRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GC 210 (244)
Q Consensus 138 l~~s~p~w~-----~~~g~~~~~~~~~~~~~~~~~~p~~lRVNtlk~s~e~~~~~L~~-g~~~~~~~~~p~~l~l~~-~~ 210 (244)
+++++|.|+ ..|| ++++++++ +.+ .++|+++|||++|++++++.+.|++ |+.+++++++|+++.+.. +.
T Consensus 12 ~~~~~P~w~~~~~~~~~g-~~~~~~~~--~~~-~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 87 (315)
T 1ixk_A 12 LRLGYSKLFADRYFQLWG-ERAIRIAE--AME-KPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPF 87 (315)
T ss_dssp HHTTCCHHHHHHHHHHHT-THHHHHHH--HTT-SCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEECSS
T ss_pred HHhCCcHHHHHHHHHHcc-HHHHHHHH--HcC-CCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeECCCCCceEEEeCCCC
Confidence 345566655 4578 67888888 666 7999999999999999999999988 999999999999998854 34
Q ss_pred CCCCchhhhcceEEeechhhHHhHHhhCCCCCCC
Q 046012 211 DLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244 (244)
Q Consensus 211 ~l~~~~~f~~G~~~vQD~aSql~a~~L~p~pG~~ 244 (244)
++..++.|.+|++++||++||+++.+++++||++
T Consensus 88 ~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~~ 121 (315)
T 1ixk_A 88 SITSTPEFLTGLIYIQEASSMYPPVALDPKPGEI 121 (315)
T ss_dssp CGGGSHHHHTTSEEECCHHHHHHHHHHCCCTTCE
T ss_pred CcccChhHhcceEEEeCHHHHHHHHHhCCCCCCE
Confidence 6899999999999999999999999999999863
No 5
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=99.61 E-value=5e-15 Score=116.19 Aligned_cols=112 Identities=15% Similarity=0.145 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHHHHHccch-hhhhhhccc-ccccCCCccCHHHHHHHHHHHHhcHHHHHHHHhhcccccc-hhh----hh
Q 046012 32 YFARREAAKVLRLVLRGDA-RRRAVGSIK-SLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNS-KWK----RQ 104 (244)
Q Consensus 32 ~~~R~~A~~iL~~v~~~~~-~~~~l~~l~-~l~~~l~~~dr~~~~~LvygvlR~~~~Ld~il~~~~~~~~-~~~----~~ 104 (244)
..+|+.|+++|.++..+|. +++. .+. .+...++.+|++|+++|||||+|++..||++|+++ +++ +.. .+
T Consensus 6 ~~aR~~A~~~L~~~~~~~~~~~~~--~l~~~~~~~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~~--l~~w~l~rl~~~~ 81 (142)
T 1tzv_A 6 RRMRLAVFKALFQHEFRRDEDLEQ--ILEEILDETYDKKAKEDARRYIRGIKENLSMIDDLISRY--LEKWSLNRLSVVD 81 (142)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCHHH--HHHHHCCTTSCHHHHHHHHHHHHHHHHTHHHHHHHHHTT--CSSSCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHH--HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCChHHCCHHH
Confidence 3689999999999988887 6643 222 22234678999999999999999999999999995 655 332 45
Q ss_pred HHHHHHHHHHHHhcCccccch---hHHHHHHHhh----HHHHHHHHHHHH
Q 046012 105 EELVYILTYDILFGQEISLVG---DAEKFLMLHK----GAIQSALARLLV 147 (244)
Q Consensus 105 ~~lLrv~~yqll~~~~~p~~a---e~v~~v~r~~----~~l~~s~p~w~~ 147 (244)
+++||+|+|||+|++++|+++ |+|++++++. .++.+++.+-+.
T Consensus 82 r~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVL~~i~ 131 (142)
T 1tzv_A 82 RNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIA 131 (142)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHCCCcchhhHHHHHHHHH
Confidence 999999999999998899997 9999998862 345566655444
No 6
>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A
Probab=99.60 E-value=4.8e-15 Score=117.23 Aligned_cols=113 Identities=12% Similarity=0.070 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHHccchhhhhhhcc-cccc-cC-CCccCHHHHHHHHHHHHhcHHHHHHHHhhcccccc-hhh----h
Q 046012 32 YFARREAAKVLRLVLRGDARRRAVGSI-KSLV-YS-PSVKNKKATFALVCQTLKHLSIIKQVLDSASILNS-KWK----R 103 (244)
Q Consensus 32 ~~~R~~A~~iL~~v~~~~~~~~~l~~l-~~l~-~~-l~~~dr~~~~~LvygvlR~~~~Ld~il~~~~~~~~-~~~----~ 103 (244)
.++|+.|+++|.++..+|.+.+. .+ ..+. .. ++.+|++|+++|||||+|++..||++|+++ +++ ++. .
T Consensus 6 ~~aR~~A~q~L~~~~~~~~~~~~--~l~~~~~~~~~~~~~dr~~~~~lv~gvl~~~~~lD~~i~~~--l~~w~~~rl~~~ 81 (149)
T 3r2d_A 6 KGARDTAFLVLYRWDLRGENPGE--LFKEVVEEKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEKH--LKGWSIDRLGYV 81 (149)
T ss_dssp HHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHTCCCHHHHHHHHHHHHHHHHTHHHHHHHHHTT--C---CGGGSCHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHH--HHHHHHHhcccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHH--hcCCCccccCHH
Confidence 47999999999999888776643 22 2332 33 778999999999999999999999999995 654 332 4
Q ss_pred hHHHHHHHHHHHHhcCccccch---hHHHHHHHhh----HHHHHHHHHHHHH
Q 046012 104 QEELVYILTYDILFGQEISLVG---DAEKFLMLHK----GAIQSALARLLVR 148 (244)
Q Consensus 104 ~~~lLrv~~yqll~~~~~p~~a---e~v~~v~r~~----~~l~~s~p~w~~~ 148 (244)
++++||+|+|||+|++++|+++ |+|++++++. .++.+++.+-+.+
T Consensus 82 ~r~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~i~r 133 (149)
T 3r2d_A 82 ERNALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSAIYK 133 (149)
T ss_dssp HHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeehHHHHHHHHHHhCCCCccccchHHhhHHHH
Confidence 5999999999999998899997 9999998872 3456676654443
No 7
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Probab=99.53 E-value=1.7e-14 Score=127.05 Aligned_cols=79 Identities=43% Similarity=0.666 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCCCHHHHHHHHcc-cCceeec------------------CCCCCeEEeCCCCCCCCchhhhcceEEee
Q 046012 166 VPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKD------------------DLVPDLLILPPGCDLHDHPLIVNGCVFLQ 226 (244)
Q Consensus 166 ~~~p~~lRVNtlk~s~e~~~~~L~~-g~~~~~~------------------~~~p~~l~l~~~~~l~~~~~f~~G~~~vQ 226 (244)
.++|+|+||||+|++++++++.|++ |+.++++ .++|+++.++++.++..+++|++|+|++|
T Consensus 8 ~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~Q 87 (309)
T 2b9e_A 8 SQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 87 (309)
T ss_dssp -CCCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEEC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeeccccccccccccccccccccCCCceEEeCCCCCcccChHHHCCeEEEE
Confidence 6899999999999999999999988 8877664 56788999987678999999999999999
Q ss_pred chhhHHhHHhhCCCCCCC
Q 046012 227 GKASSMVAAALAPKPGWK 244 (244)
Q Consensus 227 D~aSql~a~~L~p~pG~~ 244 (244)
|++||+++.+|+|+||++
T Consensus 88 d~~s~l~~~~l~~~~g~~ 105 (309)
T 2b9e_A 88 DRASCLPAMLLDPPPGSH 105 (309)
T ss_dssp CTGGGHHHHHHCCCTTCE
T ss_pred CHHHHHHHHHhCCCCCCE
Confidence 999999999999999973
No 8
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=99.53 E-value=1.1e-14 Score=134.48 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=84.7
Q ss_pred HHHHHHHcCCCCHHHHHHhhcCCCCC-CCceEEEcCCCCCHHHHHHHHcccCceeecCCCCCeEEeCCCCCCCCchhhhc
Q 046012 142 LARLLVRNKVKSIEDLMALYQTPDVP-KPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHDHPLIVN 220 (244)
Q Consensus 142 ~p~w~~~~g~~~~~~~~~~~~~~~~~-~p~~lRVNtlk~s~e~~~~~L~~g~~~~~~~~~p~~l~l~~~~~l~~~~~f~~ 220 (244)
+.+|...||+ +++++++ +.+ .+ ||++|||||+|++++++.+.| |+.+++.+++|+++++.....+..++.|.+
T Consensus 7 ~~~~~~~~g~-e~~~~l~--a~~-~~~~~~~lRvN~lk~~~~~~~~~l--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~ 80 (464)
T 3m6w_A 7 LSRMAELLGE-EFPAFLK--ALT-EGKRTYGLRVNTLKLPPEAFQRIS--PWPLRPIPWCQEGFYYPEEARPGPHPFFYA 80 (464)
T ss_dssp HHHHHHHHGG-GHHHHHH--HHH-TSCCCCEEEECTTTCCHHHHHHHC--SSCCEEETTEEEEEECCTTCCCSSSHHHHT
T ss_pred HHHHHHHHHH-HHHHHHH--HcC-CCCCCeEEEEcCCCCCHHHHHHHc--CCCceecCCCCceEEECCCCCcccChHHhC
Confidence 3556667894 5888888 666 68 999999999999999998877 777888999999999987667899999999
Q ss_pred ceEEeechhhHHhHHhhCCCCCCC
Q 046012 221 GCVFLQGKASSMVAAALAPKPGWK 244 (244)
Q Consensus 221 G~~~vQD~aSql~a~~L~p~pG~~ 244 (244)
|.++|||++||+++.+|+++||++
T Consensus 81 G~~~vQd~ss~l~a~~L~~~~g~~ 104 (464)
T 3m6w_A 81 GLYYIQEPSAQAVGVLLDPKPGER 104 (464)
T ss_dssp TSEEECCTTTHHHHHHHCCCTTCE
T ss_pred CeEEEECHHHHHHHHhcCcCCCCE
Confidence 999999999999999999999873
No 9
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=99.51 E-value=8.5e-15 Score=136.07 Aligned_cols=100 Identities=19% Similarity=0.211 Sum_probs=81.7
Q ss_pred HHHHHHH-----HcCCC-CHHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cCceeecCCCCCeEEeCCCC---
Q 046012 141 ALARLLV-----RNKVK-SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGC--- 210 (244)
Q Consensus 141 s~p~w~~-----~~g~~-~~~~~~~~~~~~~~~~p~~lRVNtlk~s~e~~~~~L~~-g~~~~~~~~~p~~l~l~~~~--- 210 (244)
++|.|+. .||.+ +++++++ +.+ .++|+++||||+|++++++.+.|++ |+.+++.+++|+++.+....
T Consensus 7 ~~P~~~~~~~~~~~g~~~~~~~~~~--a~~-~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (479)
T 2frx_A 7 YFPDAFLTQMREAMPSTLSFDDFLA--ACQ-RPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDA 83 (479)
T ss_dssp CCCHHHHHHHGGGCC----CHHHHH--HHT-SCCCCCEEECTTTCCHHHHHHHHGGGCCCCCEETTEEEEEC--------
T ss_pred cCcHHHHHHHHHHcCccHHHHHHHH--hcC-CCCCEEEEEeCCCCCHHHHHHHHHHcCCceeecCCCCceEEEecCcccc
Confidence 4566655 46766 5688888 666 7999999999999999999999988 99999999999999886432
Q ss_pred -CCCCchhhhcceEEeechhhHHhHHhhCCC--CCC
Q 046012 211 -DLHDHPLIVNGCVFLQGKASSMVAAALAPK--PGW 243 (244)
Q Consensus 211 -~l~~~~~f~~G~~~vQD~aSql~a~~L~p~--pG~ 243 (244)
.+..+++|++|.+++||++||+++.+|+|+ ||+
T Consensus 84 ~~~~~~~~~~~G~~~~Qd~~s~l~~~~L~~~~~~g~ 119 (479)
T 2frx_A 84 LPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQ 119 (479)
T ss_dssp -CGGGSHHHHTTSEEECCHHHHHHHHHHTTTTCCCS
T ss_pred cCcccChHHhCcEEEEECHHHHHHHHHhCcccCCCC
Confidence 688999999999999999999999999998 886
No 10
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=99.48 E-value=9e-14 Score=110.69 Aligned_cols=114 Identities=11% Similarity=0.107 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHccchhh-hhhhcccccc-cC-CCccCHHHHHHHHHHHHhcHHHHHHHHhhcccccc-hhh----h
Q 046012 32 YFARREAAKVLRLVLRGDARR-RAVGSIKSLV-YS-PSVKNKKATFALVCQTLKHLSIIKQVLDSASILNS-KWK----R 103 (244)
Q Consensus 32 ~~~R~~A~~iL~~v~~~~~~~-~~l~~l~~l~-~~-l~~~dr~~~~~LvygvlR~~~~Ld~il~~~~~~~~-~~~----~ 103 (244)
..+|+.|+++|.++..+|.+. ..+.....+. .+ ....|++|+++|||||+|++..||++|+++ +++ +.. .
T Consensus 11 ~~aR~~Alq~L~~~~~~~~~~~~~l~~~~~l~~~d~~~~~~~~~~~~lv~gvl~~~~~lD~~i~~~--l~~w~l~rl~~~ 88 (156)
T 1eyv_A 11 HQARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITAH--LRGWTLDRLPAV 88 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHTT--STTCCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhHHHHHHHHHHH--hcCCChhhCCHH
Confidence 358999999999998877543 3221101111 11 234569999999999999999999999995 654 322 4
Q ss_pred hHHHHHHHHHHHHhcCccccch---hHHHHHHHhh----HHHHHHHHHHHH
Q 046012 104 QEELVYILTYDILFGQEISLVG---DAEKFLMLHK----GAIQSALARLLV 147 (244)
Q Consensus 104 ~~~lLrv~~yqll~~~~~p~~a---e~v~~v~r~~----~~l~~s~p~w~~ 147 (244)
++++||+|+|||+|++++|+++ |+|++++++. .++.+++.+-+.
T Consensus 89 ~r~iLrla~yel~~~~~iP~~v~InEaVelak~~~~~~~~~fVNgVLr~i~ 139 (156)
T 1eyv_A 89 DRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVM 139 (156)
T ss_dssp HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhCCCccccchHHHHHHHH
Confidence 6999999999999998899997 9999998862 345666655443
No 11
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=99.38 E-value=7.5e-13 Score=114.17 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=70.0
Q ss_pred CCCCceEEEcCCCCCHHHHHHHHcc-cCceeecCCCCCeEEe-CCCCCCCCchhhhcceEEeechhhHHhHHhhCCCCCC
Q 046012 166 VPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLIL-PPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKPGW 243 (244)
Q Consensus 166 ~~~p~~lRVNtlk~s~e~~~~~L~~-g~~~~~~~~~p~~l~l-~~~~~l~~~~~f~~G~~~vQD~aSql~a~~L~p~pG~ 243 (244)
.++|+++|||++|++++++.+.|++ |+.+.+ ++.|+++.+ ..+.++..++.|.+|++++||++||+++.++++++|+
T Consensus 7 ~~~~~~~rvn~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g~ 85 (274)
T 3ajd_A 7 GEKMQFIRVNTLKINPEVLKKRLENKGVVLEK-TFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPREDD 85 (274)
T ss_dssp --CCEEEEECTTTCCHHHHHHHHHTTTCEEEE-CSSTTEEEEEECSSCTTSSHHHHTTSEEECCSGGGHHHHHHCCCTTC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHCCCeecC-CCCCceEEEecCCCCcccChhhhCCeEEEeCHHHHHHHHHhCCCCcC
Confidence 6899999999999999999999988 999888 899999988 3445789999999999999999999999999999986
Q ss_pred C
Q 046012 244 K 244 (244)
Q Consensus 244 ~ 244 (244)
+
T Consensus 86 ~ 86 (274)
T 3ajd_A 86 F 86 (274)
T ss_dssp E
T ss_pred E
Confidence 3
No 12
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=99.33 E-value=7.1e-13 Score=122.27 Aligned_cols=91 Identities=16% Similarity=0.104 Sum_probs=74.6
Q ss_pred HHHHHHcCCCCHHHHHHhhcCCCCCCC-ceEEEcCCCCCHHHHHHHHcccCcee---ecCCCCCeEEeCCCCCCCCchhh
Q 046012 143 ARLLVRNKVKSIEDLMALYQTPDVPKP-RYVRVNTLKMDVDSAVLELGKQFVVQ---KDDLVPDLLILPPGCDLHDHPLI 218 (244)
Q Consensus 143 p~w~~~~g~~~~~~~~~~~~~~~~~~p-~~lRVNtlk~s~e~~~~~L~~g~~~~---~~~~~p~~l~l~~~~~l~~~~~f 218 (244)
.+|...||+ +++++++ +++ .+|| +++||||+|+ +++.+.+ |+.++ +.+++|++++ . ..+..++.|
T Consensus 14 ~~~~~~~g~-e~~~~~~--a~~-~~~~~~~lRvN~lk~--~~~~~~~--~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~ 82 (456)
T 3m4x_A 14 KKYRLLLGE-EASDFFS--ALE-QGSVKKGFRWNPLKP--AGLDMVQ--TYHSEELQPAPYSNEGFL-G--TVNGKSFLH 82 (456)
T ss_dssp HHHHHHHGG-GHHHHHH--HHH-HCCCCCEEECCTTST--THHHHHH--HHTCSSCCBCTTCTTEEE-S--CCCTTSHHH
T ss_pred HHHHHHhCH-HHHHHHH--HcC-CCCCCcEEEEcCccH--HHHHHhc--CCcccccCCCCCCcceEE-c--CCCCCChHH
Confidence 455567885 4888888 666 6888 9999999999 6665543 55566 8899999998 3 346899999
Q ss_pred hcceEEeechhhHHhHHhhCCCCCCC
Q 046012 219 VNGCVFLQGKASSMVAAALAPKPGWK 244 (244)
Q Consensus 219 ~~G~~~vQD~aSql~a~~L~p~pG~~ 244 (244)
++|+|+|||++||+++.+|+|+||++
T Consensus 83 ~~G~~~vQd~ss~l~~~~L~~~~g~~ 108 (456)
T 3m4x_A 83 QAGYEYSQEPSAMIVGTAAAAKPGEK 108 (456)
T ss_dssp HTTSCEECCTTTHHHHHHHCCCTTCE
T ss_pred hCCcEEEECHHHHHHHHHcCCCCCCE
Confidence 99999999999999999999999873
No 13
>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*
Probab=98.49 E-value=9.7e-08 Score=85.38 Aligned_cols=92 Identities=15% Similarity=0.047 Sum_probs=59.9
Q ss_pred HcCCCCHHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cCce-------------e------ecC---CCCCe-
Q 046012 148 RNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVV-------------Q------KDD---LVPDL- 203 (244)
Q Consensus 148 ~~g~~~~~~~~~~~~~~~~~~p~~lRVNtlk~s~e~~~~~L~~-g~~~-------------~------~~~---~~p~~- 203 (244)
.||++ ...+.. +.+ .+++..+|||++. +.+++.+.|+. |..- + +.+ ..+..
T Consensus 30 ~~G~~-W~~~r~--aL~-~~~~~~a~vN~f~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l 104 (359)
T 4fzv_A 30 QFGDL-WPSIRV--SLL-SEQKYGALVNNFA-AWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNL 104 (359)
T ss_dssp HHGGG-HHHHHH--HHT-SCCCCEEEECTTS-CHHHHHHHHHHTTCEEHHHHHHHTTTCCC-----CCSSCHHHHSCSSC
T ss_pred Hhhhh-hHHHHH--HHc-CcchhEEEeccCC-ChHHHHHHHHhccCccchhhhhcccccccccccccCCCcccccCCccc
Confidence 35643 334444 344 5788899999985 56788888776 4210 0 000 01111
Q ss_pred -EEeCCCCCCCCchhhhcce-----EEeechhhHHhHHhhCCCCCCC
Q 046012 204 -LILPPGCDLHDHPLIVNGC-----VFLQGKASSMVAAALAPKPGWK 244 (244)
Q Consensus 204 -l~l~~~~~l~~~~~f~~G~-----~~vQD~aSql~a~~L~p~pG~~ 244 (244)
+.+.+.+++..+|.|++|. |++||+|||+++++|+|+||++
T Consensus 105 ~~~~~~~g~~~~~p~~~~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~ 151 (359)
T 4fzv_A 105 RCFTFDRGDISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDI 151 (359)
T ss_dssp CEEECCTTCCCCCCCCCBCTTSSBSEEEECGGGHHHHHHHCCCTTEE
T ss_pred eEEecCCCChhcCCCcccCceeccchhhhCHHHHHHHHHhCCCCCCE
Confidence 2333445788899998886 6667799999999999999973
No 14
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13
Probab=75.85 E-value=0.053 Score=45.62 Aligned_cols=81 Identities=9% Similarity=-0.083 Sum_probs=32.8
Q ss_pred cCCCCCCCceEEEcCCCCCHHHHH-HHHcc-cCceeecCCCCCeEEeCCCCCCCCchhhhcceEEeechhhHHhHHhhCC
Q 046012 162 QTPDVPKPRYVRVNTLKMDVDSAV-LELGK-QFVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAP 239 (244)
Q Consensus 162 ~~~~~~~p~~lRVNtlk~s~e~~~-~~L~~-g~~~~~~~~~p~~l~l~~~~~l~~~~~f~~G~~~vQD~aSql~a~~L~p 239 (244)
..++..+++++|||+.+.+.+++. +.|.. ++..... .....+....+......+.|..+...+|+..++++...+++
T Consensus 30 ~~~~~~~~~~~r~~~~~~~~~~~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (275)
T 1yb2_A 30 VSEDEYGKFDESTNSILVKGKMHHLGISRVIEPGDELI-VSGKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMRCGL 108 (275)
T ss_dssp ECSSCCEEEETTTTEEEC-CCEEECC-CCCCCTTCEEE-ETTEEEEEECCCGGGHHHHC------------------CCC
T ss_pred EecCCCCceeccccceeccCCccchhheeCCCCCcEEE-ECCeEEEEeCCCHHHHHhhccccccccChhhHHHHHHHcCC
Confidence 344578999999997776554321 22322 3211111 23333333233334445678888999999999999999999
Q ss_pred CCCC
Q 046012 240 KPGW 243 (244)
Q Consensus 240 ~pG~ 243 (244)
++|+
T Consensus 109 ~~~~ 112 (275)
T 1yb2_A 109 RPGM 112 (275)
T ss_dssp CTTC
T ss_pred CCcC
Confidence 8886
Done!