RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 046012
(244 letters)
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 80.0 bits (198), Expect = 7e-18
Identities = 35/100 (35%), Positives = 44/100 (44%), Gaps = 19/100 (19%)
Query: 164 PDVPKPRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLL 204
P PR+VRVNTLK D V +Q D L+P+LL
Sbjct: 6 PASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELL 65
Query: 205 ILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244
+ P DLH+HPL G + LQ +AS + A L P PG
Sbjct: 66 VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 105
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 63.8 bits (156), Expect = 5e-12
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFL 225
+ +RVNTLK +V+ + EL + V + + VP +L + + G + +
Sbjct: 184 HEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIV 243
Query: 226 QGKASSMVAAALAPKPG 242
Q +AS++ + L PKPG
Sbjct: 244 QEEASAVASIVLDPKPG 260
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 60.3 bits (147), Expect = 5e-11
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Query: 165 DVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHDHPLIVNGCV 223
K +++RVNTLK++ + L + V++K L + + P + G
Sbjct: 6 KGEKMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYY 65
Query: 224 FLQGKASSMVAAALAPKPG 242
Q +S + L P+
Sbjct: 66 MPQSISSMIPPIVLNPRED 84
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 60.3 bits (147), Expect = 6e-11
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPD-LLILPPGCDL 212
E + + + + P PR RVNTLK+ V V L K+ F ++ + + +
Sbjct: 30 ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSI 89
Query: 213 HDHPLIVNGCVFLQGKASSMVAAALAPKPG 242
P + G +++Q +S AL PKPG
Sbjct: 90 TSTPEFLTGLIYIQEASSMYPPVALDPKPG 119
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 55.4 bits (134), Expect = 3e-09
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 9/89 (10%)
Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPD-LLILPPGCDLH 213
+ AL Q + R N LK V +Q + L G
Sbjct: 26 DFFSALEQGS---VKKGFRWNPLKPAGLDMVQTY-HSEELQPAPYSNEGFLGTVNG---- 77
Query: 214 DHPLIVNGCVFLQGKASSMVAAALAPKPG 242
L G + Q ++ +V A A KPG
Sbjct: 78 KSFLHQAGYEYSQEPSAMIVGTAAAAKPG 106
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 55.3 bits (134), Expect = 4e-09
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLH 213
E ++ + + P ++R+N DS + L + PD + L +H
Sbjct: 159 EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH 218
Query: 214 DHPLIVNGCVFLQGKASSMVAAALAPKPG 242
P +G V +Q ++ LAP+ G
Sbjct: 219 ALPGFEDGWVTVQDASAQGCMTWLAPQNG 247
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 55.0 bits (133), Expect = 5e-09
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 165 DVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVF 224
+ + +RVNTLK+ ++ + ++ + P HP G +
Sbjct: 27 EGKRTYGLRVNTLKLPPEAFQRISP--WPLRPIPWCQEGFYYPEEARPGPHPFFYAGLYY 84
Query: 225 LQGKASSMVAAALAPKPG 242
+Q ++ V L PKPG
Sbjct: 85 IQEPSAQAVGVLLDPKPG 102
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 51.2 bits (123), Expect = 8e-08
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 148 RNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLIL 206
R + S P R +RVNTLK+ V + + + + +
Sbjct: 17 REAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWI 76
Query: 207 PPGCD----LHDHPLIVNGCVFLQGKASSMVAAALA--PKPG 242
+ L ++G ++Q +S + AAL
Sbjct: 77 ERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAP 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 7e-07
Identities = 42/249 (16%), Positives = 73/249 (29%), Gaps = 82/249 (32%)
Query: 26 NAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATFALVCQTLKHLS 85
AE + L LVL + V + N F L C+ L
Sbjct: 231 QAELRRLLKSKPYENCL-LVLL-N------------VQNAKAWN---AFNLSCKIL---- 269
Query: 86 II---KQVLDSASILNSKWKRQEELVYILTYD---ILFGQ-----------E-------- 120
+ KQV D S + + LT D L + E
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 121 ISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYVR------- 173
+S++ + + G + + +K+ +I + P + + R
Sbjct: 330 LSIIAE-----SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 174 VN----TLKM--------DVDSAVLELGKQFVVQKDDL-----VPDLLI-LPPGCD---- 211
+ L + DV V +L K +V+K +P + + L +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 212 LHDHPLIVN 220
LH IV+
Sbjct: 445 LHR--SIVD 451
Score = 40.2 bits (93), Expect = 4e-04
Identities = 31/179 (17%), Positives = 50/179 (27%), Gaps = 58/179 (32%)
Query: 82 KHLS-IIKQVLDSAS---ILNSKWKRQEELVYILTYDILF--GQEI--SLVGDAEK---- 129
K + + K +L I+ SK L + L +E+ V + +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSK--DAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 130 FLM--LHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPKPRYV-R---VNTLKMDVDS 183
FLM + Q ++ IE LY V V R L+
Sbjct: 93 FLMSPIKTEQRQPSM------MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR----Q 142
Query: 184 AVLELGK-QFVVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKP 241
A+LEL + V+ + V G GK + +
Sbjct: 143 ALLELRPAKNVL-----------------IDG----VLGS----GK-TWVALDVCLSYK 175
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 9e-06
Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 35/156 (22%)
Query: 15 SAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAV--GSIKSLVYSPSVKNKKA 72
+A S +S +V+ RG + AV + Y N
Sbjct: 1768 AALASLADVMS-------IE--SLVEVVFY--RGMTMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 73 TFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLM 132
A Q ++ V++ KR LV I+ Y++ Q+ GD
Sbjct: 1817 VAASFSQ-----EALQYVVERVG------KRTGWLVEIVNYNVE-NQQYVAAGDLR---- 1860
Query: 133 LHKGAIQSALARLLVRNKVKSIEDLMALYQTPDVPK 168
A+ + +L K++ I D++ L ++ + +
Sbjct: 1861 ----ALD-TVTNVLNFIKLQKI-DIIELQKSLSLEE 1890
Score = 43.1 bits (101), Expect = 5e-05
Identities = 42/292 (14%), Positives = 86/292 (29%), Gaps = 93/292 (31%)
Query: 7 AATAPSGASAKTSRNGRLSNAERSAYF----ARR-------EAAKVLRLVLRGDARRRAV 55
P + + + AE F + + +VL L L + +
Sbjct: 38 NKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT-EFENCYL 96
Query: 56 GS--IKSLVYSPSVKNKKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEE--L---- 107
I +L +N +K +IK + + + + ++ L
Sbjct: 97 EGNDIHALAAKLLQENDTTL-------VKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 108 ------VYILTYDILF-GQEISLVGDAEKFL----MLHK-------GAIQSALARL--LV 147
+ + F GQ G+ + + L++ I+ + L L+
Sbjct: 150 GEGNAQLVAI-----FGGQ-----GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 148 RNKVKSIE------DLMALYQTPD-VPKPRYVRVNTLKMDVDSA--------VLELGKQF 192
R + + + +++ + P P Y+ S V++L +
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYL---------LSIPISCPLIGVIQLA-HY 249
Query: 193 VVQKDDLVPDLLILPPGCDLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244
VV LL PG +L + G + A A+A W+
Sbjct: 250 VV-----TAKLLGFTPG-ELRSYLKGATGHS-----QGLVTAVAIAETDSWE 290
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.049
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 13/41 (31%)
Query: 148 RNKVKSIEDLMALYQTPD-VPKPRYVRVNTLKMDVDSAVLE 187
+ +K ++ + LY D P + + A +E
Sbjct: 19 KQALKKLQASLKLY-ADDSAPA---LAIK--------ATME 47
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer,
oxidoreductase, calcium- binding, methanol utilization,
PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP:
b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Length = 599
Score = 30.3 bits (68), Expect = 0.57
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 216 PLIVNGCVFLQGKASSMVAAALAPKPG---WK 244
PL+V+G +++ + A PG W+
Sbjct: 58 PLVVDGKMYIHTSFPNNTFALGLDDPGTILWQ 89
>3oqg_A HPY188I; endonuclease-DNA complex, restriction enzyme, HPY188I,
inter GIY-YIG nuclease, catalytic mechanism; HET: DNA;
1.75A {Helicobacter pylori} PDB: 3or3_A
Length = 180
Score = 28.7 bits (63), Expect = 1.3
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 70 KKATFALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYD 114
K F L+C+ + + S+ K + ++ K + E LVY+
Sbjct: 37 YKEYFNLLCELVPNNSLEKL---EINAIDEKNMKNEGLVYVFVIQ 78
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural
genomics, riken STR genomics/proteomics initiative,
RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP:
c.26.1.4 PDB: 1ufv_A
Length = 276
Score = 28.6 bits (65), Expect = 1.7
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 7/41 (17%)
Query: 16 AKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVG 56
A +SRN LS R+ A VL L G
Sbjct: 179 ALSSRNVYLSPET-------RKKAPVLYRALLAMREVAGQG 212
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative;
structure-specific endonuclease, hydrolase; 1.78A
{Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A
1j25_A
Length = 143
Score = 27.5 bits (61), Expect = 2.3
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 125 GDAEKFLMLHKGAIQSALARLLVRNKVK 152
G +H AI+ A+A + V V
Sbjct: 84 GSLYGIRNVHPNAIRGAIAAVTVDFGVP 111
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL,
ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A*
3kyc_A* 3kyd_A*
Length = 346
Score = 28.2 bits (63), Expect = 2.9
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 17/94 (18%)
Query: 146 LVRNKVKSIEDLMA--LYQTPDVPKPR-------------YVRVNTLKMDVDSAVLELGK 190
++ ++ + ED A L +T V + R V V D++
Sbjct: 65 MLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFT 124
Query: 191 QF--VVQKDDLVPDLLILPPGCDLHDHPLIVNGC 222
QF V ++ + C +
Sbjct: 125 QFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDV 158
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: PAF;
1.58A {Yersinia pestis} PDB: 3q10_A* 3mue_A 1iho_A
3guz_A*
Length = 287
Score = 27.9 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 16 AKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVG 56
A +SRNG L+ E R+ A L ++ A + A+G
Sbjct: 188 ALSSRNGYLTEEE-------RQIAPQLSKIMWALAEKMALG 221
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase,
drug design, ATP-binding, magnesium, metal-binding;
1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB:
3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A*
3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A*
3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Length = 301
Score = 28.0 bits (63), Expect = 3.1
Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 7/41 (17%)
Query: 16 AKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVG 56
A +SRN L A+ R AA L L A G
Sbjct: 195 AMSSRNRYLDPAQ-------RAAAVALSAALTAAAHAATAG 228
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold,
beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio
vulgaris subsp} PDB: 2z1t_A*
Length = 343
Score = 27.7 bits (62), Expect = 3.4
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 182 DSAVLELGKQFVVQKDDLVPDLLILPPG 209
D+A L+L + D D + P G
Sbjct: 41 DAARLDLTGPLAMSTDSYTVDPIFFPGG 68
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S
genomics center for infectious disease, ssgcid, ligase;
HET: AMP; 2.25A {Burkholderia thailandensis}
Length = 283
Score = 27.5 bits (62), Expect = 4.3
Identities = 13/41 (31%), Positives = 14/41 (34%), Gaps = 7/41 (17%)
Query: 16 AKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVG 56
A +SRN LS AE R A L L G
Sbjct: 184 ALSSRNRYLSEAE-------RAEAPELAKTLARVRDAVLDG 217
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid,
pantoate beta alanine ligase, ATP-binding, cytoplasm,
ligase; HET: ATP; 2.10A {Brucella melitensis}
Length = 314
Score = 27.2 bits (61), Expect = 4.7
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 16 AKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVG 56
A +SRN L+ + R AA ++ L R G
Sbjct: 204 ACSSRNVYLTPEQ-------RRAAIIVPQALDEADRLYRSG 237
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding,
nucleotide-binding, pantothenate biosynthesis; HET: PAJ
PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Length = 283
Score = 27.1 bits (61), Expect = 5.4
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 16 AKTSRNGRLSNAERSA 31
AK+SRN L+ ER
Sbjct: 184 AKSSRNVYLTEQERQE 199
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant
methionine recycling, refol transferase; HET: SR1 ADP;
1.90A {Arabidopsis thaliana}
Length = 420
Score = 27.3 bits (59), Expect = 5.7
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 120 EISLVGDAEKFLMLHKGAIQSALARLLVRNKVKSIEDLMALYQ 162
+ + + ++ + + A++ A L R K KSI ++++ Q
Sbjct: 375 DFESIEEDKRRAICERSALEFAKMLLKERRKFKSIGEVVSAIQ 417
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.40A {Thermotoga maritima}
Length = 280
Score = 26.7 bits (60), Expect = 6.1
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 16 AKTSRNGRLSNAERSA----YFARREAAKVLR 43
A +SRN LS ER Y + + A +
Sbjct: 183 AMSSRNVYLSPEERQQALSLYQSLKIAENLYL 214
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural
genomics, structural of infectious diseases; HET: MSE
AMP GOL; 2.00A {Francisella tularensis subsp} PDB:
3qtt_A*
Length = 264
Score = 26.8 bits (60), Expect = 6.5
Identities = 4/16 (25%), Positives = 8/16 (50%)
Query: 16 AKTSRNGRLSNAERSA 31
+SRN L++ +
Sbjct: 186 PLSSRNKNLTSTDIEI 201
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics,
center for structural of infectious diseases, csgid,
ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp}
PDB: 3uy4_A*
Length = 285
Score = 26.7 bits (60), Expect = 6.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 16 AKTSRNGRLSNAERSA 31
AK+SRN LS ER A
Sbjct: 185 AKSSRNVYLSKEERKA 200
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.377
Gapped
Lambda K H
0.267 0.0828 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,549,789
Number of extensions: 208009
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 28
Length of query: 244
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 153
Effective length of database: 4,160,982
Effective search space: 636630246
Effective search space used: 636630246
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.2 bits)