RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 046012
         (244 letters)



>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 293

 Score = 57.0 bits (136), Expect = 3e-10
 Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 19/95 (20%)

Query: 169 PRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLLILPPG 209
           PR+VRVNTLK   D  V    +Q                        D L+P+LL+ P  
Sbjct: 3   PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62

Query: 210 CDLHDHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244
            DLH+HPL   G + LQ +AS + A  L P PG  
Sbjct: 63  TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSH 97


>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
           {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 313

 Score = 48.1 bits (113), Expect = 3e-07
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)

Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPG-CDL 212
           E  + + +  + P PR  RVNTLK+ V   V  L K+ F  ++     +   L      +
Sbjct: 28  ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSI 87

Query: 213 HDHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244
              P  + G +++Q  +S     AL PKPG  
Sbjct: 88  TSTPEFLTGLIYIQEASSMYPPVALDPKPGEI 119


>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
           methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 284

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 1/91 (1%)

Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLH 213
           E   ++ +  +   P ++R+N      DS +  L +  +        PD + L     +H
Sbjct: 15  EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH 74

Query: 214 DHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244
             P   +G V +Q  ++      LAP+ G  
Sbjct: 75  ALPGFEDGWVTVQDASAQGCMTWLAPQNGEH 105


>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
           {Methylobacterium extorquens [TaxId: 408]}
          Length = 596

 Score = 29.5 bits (65), Expect = 0.43
 Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 3/32 (9%)

Query: 216 PLIVNGCVFLQGKASSMVAAALAPKPG---WK 244
           PL+V+G +++     +   A     PG   W+
Sbjct: 58  PLVVDGKMYIHTSFPNNTFALGLDDPGTILWQ 89


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 27.1 bits (59), Expect = 2.4
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 82  KHLSIIKQVLDSASILNSKWKRQE--ELVYI--LTYDILFGQ 119
           K L+ I+        L+   K++   +L++I  L +DI FG 
Sbjct: 27  KELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGH 68


>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain
           {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
          Length = 571

 Score = 26.8 bits (58), Expect = 3.0
 Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 3/32 (9%)

Query: 216 PLIVNGCVFLQGKASSMVAAALAPKPG---WK 244
           PL++   +++     +   A     PG   W+
Sbjct: 58  PLVIGDMMYVHSAFPNNTYALNLNDPGKIVWQ 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 815,177
Number of extensions: 35359
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 8
Length of query: 244
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,268,006
Effective search space: 204148966
Effective search space used: 204148966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)