Query 046013
Match_columns 215
No_of_seqs 116 out of 444
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 07:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3142 Prenylated rab accepto 100.0 1.3E-49 2.9E-54 332.6 17.5 177 23-201 10-186 (187)
2 PF03208 PRA1: PRA1 family pro 100.0 1.8E-37 4E-42 251.2 16.7 150 44-193 2-151 (153)
3 KOG4050 Glutamate transporter 99.9 2.4E-22 5.2E-27 163.9 12.0 133 46-182 15-154 (188)
4 COG5130 YIP3 Prenylated rab ac 99.9 2.2E-22 4.9E-27 161.2 10.7 145 38-184 17-161 (169)
5 COG1955 FlaJ Archaeal flagella 75.4 32 0.00069 33.7 10.3 57 32-92 121-177 (527)
6 COG1575 MenA 1,4-dihydroxy-2-n 72.2 19 0.00041 32.9 7.7 107 69-183 90-197 (303)
7 PRK13591 ubiA prenyltransferas 64.8 76 0.0017 29.0 10.0 57 54-118 78-136 (307)
8 PF02300 Fumarate_red_C: Fumar 64.6 34 0.00073 27.5 6.8 49 97-145 61-113 (129)
9 KOG0054 Multidrug resistance-a 52.9 87 0.0019 34.4 9.4 66 50-118 902-974 (1381)
10 PRK04987 fumarate reductase su 51.3 68 0.0015 25.8 6.5 50 96-145 61-114 (130)
11 PF10724 DUF2516: Protein of u 48.3 92 0.002 23.8 6.5 50 112-163 22-71 (100)
12 PRK13603 fumarate reductase su 47.7 56 0.0012 26.1 5.4 52 96-147 57-112 (126)
13 cd00546 QFR_TypeD_subunitC Qui 47.7 60 0.0013 25.9 5.6 49 96-144 57-109 (124)
14 PF06645 SPC12: Microsomal sig 38.4 96 0.0021 22.3 5.1 28 147-174 23-50 (76)
15 PF02411 MerT: MerT mercuric t 38.3 1.4E+02 0.0031 23.3 6.4 19 101-119 51-70 (116)
16 PF05879 RHD3: Root hair defec 36.7 58 0.0013 33.2 5.0 34 86-119 652-689 (742)
17 PRK06041 flagellar assembly pr 36.2 4.3E+02 0.0093 26.0 11.7 60 30-93 141-200 (553)
18 PRK11715 inner membrane protei 32.6 4.2E+02 0.0091 25.4 9.7 30 62-99 290-319 (436)
19 cd01785 PDZ_GEF_RA Ubiquitin-l 31.6 10 0.00023 28.1 -0.9 24 62-85 61-84 (85)
20 TIGR01294 P_lamban phospholamb 30.3 86 0.0019 20.8 3.3 29 71-99 20-48 (52)
21 PF15187 Augurin: Oesophageal 29.7 30 0.00066 26.8 1.3 57 30-86 26-89 (114)
22 PF06123 CreD: Inner membrane 29.1 5.2E+02 0.011 24.8 9.9 30 62-99 284-313 (430)
23 TIGR03750 conj_TIGR03750 conju 28.5 2.9E+02 0.0062 21.6 6.7 50 124-173 9-63 (111)
24 PF11368 DUF3169: Protein of u 28.4 1.1E+02 0.0025 26.4 4.8 45 75-119 189-237 (248)
25 PLN02922 prenyltransferase 27.9 4.6E+02 0.01 23.8 8.9 30 104-139 126-155 (315)
26 COG0382 UbiA 4-hydroxybenzoate 27.0 4.3E+02 0.0094 23.2 10.8 24 161-184 169-192 (289)
27 PRK13592 ubiA prenyltransferas 26.6 4.4E+02 0.0095 24.1 8.4 17 50-66 62-80 (299)
28 COG4605 CeuC ABC-type enteroch 26.1 2.1E+02 0.0046 26.3 6.1 46 50-97 144-189 (316)
29 PRK07419 1,4-dihydroxy-2-napht 24.8 4E+02 0.0087 24.0 7.9 16 126-141 138-153 (304)
30 COG3671 Predicted membrane pro 24.5 3.7E+02 0.008 21.5 7.8 88 85-180 22-111 (125)
31 PF04791 LMBR1: LMBR1-like mem 24.5 3.7E+02 0.008 25.1 7.9 34 50-86 95-130 (471)
32 PF04272 Phospholamban: Phosph 24.3 94 0.002 20.7 2.7 26 74-99 23-48 (52)
33 CHL00114 psbX photosystem II p 23.7 86 0.0019 20.1 2.3 21 155-175 2-22 (39)
34 PRK05305 phosphatidylserine de 23.4 1.9E+02 0.0042 24.4 5.2 19 83-101 6-24 (206)
35 PRK10263 DNA translocase FtsK; 23.3 1.1E+03 0.023 26.4 11.5 10 180-189 206-215 (1355)
36 PF00664 ABC_membrane: ABC tra 22.8 3.9E+02 0.0085 21.2 7.5 43 67-109 96-148 (275)
37 PF04140 ICMT: Isoprenylcystei 22.7 1.2E+02 0.0026 22.4 3.5 21 84-104 47-68 (94)
38 COG4452 CreD Inner membrane pr 22.3 7E+02 0.015 23.9 9.5 24 84-107 298-330 (443)
39 PF04530 Viral_Beta_CD: Viral 22.2 1.2E+02 0.0025 24.2 3.3 26 71-96 35-61 (122)
40 PF11241 DUF3043: Protein of u 21.9 2.6E+02 0.0057 23.4 5.6 40 61-100 53-94 (170)
41 PF05777 Acp26Ab: Drosophila a 21.7 66 0.0014 23.9 1.7 15 85-99 2-16 (90)
42 PRK12324 phosphoribose diphosp 21.5 5E+02 0.011 23.4 7.8 33 75-107 199-243 (295)
43 PF09946 DUF2178: Predicted me 21.2 1.4E+02 0.0031 22.9 3.7 24 165-190 34-57 (111)
44 PF03522 KCl_Cotrans_1: K-Cl C 20.9 45 0.00098 20.1 0.6 17 175-192 5-21 (30)
45 COG4129 Predicted membrane pro 20.7 6.7E+02 0.015 23.1 10.7 50 62-118 48-98 (332)
46 PRK04949 putative sulfate tran 20.5 5.9E+02 0.013 22.3 12.3 49 33-89 99-151 (251)
47 KOG2564 Predicted acetyltransf 20.1 91 0.002 28.8 2.6 20 48-67 38-58 (343)
48 TIGR00751 menA 1,4-dihydroxy-2 20.0 5.6E+02 0.012 22.7 7.8 15 103-117 111-125 (284)
No 1
>KOG3142 consensus Prenylated rab acceptor 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-49 Score=332.61 Aligned_cols=177 Identities=53% Similarity=0.882 Sum_probs=169.5
Q ss_pred CCCCCCChHHHHHHHHHHHHHhhcCCCCCChhHhhcCCCCCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhh
Q 046013 23 TQAPIATPAFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHP 102 (215)
Q Consensus 23 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~RPW~EF~d~~~fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll~~P 102 (215)
++.++++++.+.+.++.+++.|+.++++|||+||+|+++|++|+|++|+.+|+++|+.|||.||.+++.++.++++++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~lst~RpW~ef~d~~~fs~P~s~s~a~sRi~~Nl~yF~~NY~~iv~~~~~~sLi~~P 89 (187)
T KOG3142|consen 10 SSSPSQALSVESISSRAKQTIQSGLSTRRPWSEFFDRSAFSRPRSLSDATSRIKRNLSYFRVNYVIIVAILLFLSLITHP 89 (187)
T ss_pred CCCcccccchhhHHHHHHHHHHHHHhccCCHHHHHcccccCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhH
Confidence 44455677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCeeecceecchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCC
Q 046013 103 FSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPE 182 (215)
Q Consensus 103 ~~Ll~l~~l~~~w~~l~~~r~~~~~~~i~gr~~~~~~~~~~l~~vsi~ll~lt~~~~~lf~~l~~s~~vvllHAa~R~~~ 182 (215)
++|+++++++++|+|+|+.| |+|++++||+++|+++++++.+++++++|+++++.+++|++++|+++|+.||+||++|
T Consensus 90 ~~Livl~~lv~~w~~LY~~r--d~pLvlfgr~i~d~~~l~~L~~~ti~~lflt~~~~~l~~~l~~g~~vv~~Haafr~~d 167 (187)
T KOG3142|consen 90 LSLIVLLALVAAWLFLYFLR--DEPLVLFGRQISDREVLIGLVLITIPVLFLTSAGSNLLWALGAGLVVVLIHAAFRNTD 167 (187)
T ss_pred HHHHHHHHHHHHHHheeeec--CCCeEEeeEEecCcchhhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHhHHHHhChH
Confidence 99999999999999999987 6899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCceeecc
Q 046013 183 DLFLDEQEPINSGFLSFLG 201 (215)
Q Consensus 183 ~l~~de~~~~~~~~~~~~~ 201 (215)
|+|+||||+..+|++|+.+
T Consensus 168 dLF~dee~~~~~gl~s~~~ 186 (187)
T KOG3142|consen 168 DLFLDEEEAAASGLLSFSS 186 (187)
T ss_pred hhhhhhhhcccccccccCC
Confidence 9999999988889999854
No 2
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=100.00 E-value=1.8e-37 Score=251.24 Aligned_cols=150 Identities=38% Similarity=0.637 Sum_probs=140.9
Q ss_pred hhcCCCCCChhHhhcCCCCCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccC
Q 046013 44 RYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRP 123 (215)
Q Consensus 44 ~~~l~~~RPW~EF~d~~~fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll~~P~~Ll~l~~l~~~w~~l~~~r~ 123 (215)
+++++++|||+||+|.++|+.|+|.+|+.+|+++|+.|||+||++++++++++++++||..++++++++++|.+++..+.
T Consensus 2 ~~~~~~~Rpw~eF~~~~~fs~P~~~~~~~~Ri~~Nl~~F~~NY~~i~~~~~~~~ll~~P~~l~~~~~~~~~~~~~~~~~~ 81 (153)
T PF03208_consen 2 QSRLSPLRPWREFFDTSRFSVPSSFSEAKSRIKRNLSYFQTNYLLIFLLLFLIFLLTNPFFLLVLLLVVALWAFIYKSRK 81 (153)
T ss_pred ccccCCCCCHHHHhCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCeeecceecchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCccC
Q 046013 124 SDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 193 (215)
Q Consensus 124 ~~~~~~i~gr~~~~~~~~~~l~~vsi~ll~lt~~~~~lf~~l~~s~~vvllHAa~R~~~~l~~de~~~~~ 193 (215)
+++++.+.|+++++++++.++.+++++++++++++.+++|++++++++|++||+||+||+++.+|+|..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~lvl~HA~~r~~~~~~~~e~~~~~ 151 (153)
T PF03208_consen 82 ENDPIVIGGRKISPRQVLLALLIVSILLLFFTSAGLTLFWSLGASVLLVLLHASFREPDLKNKEENEIES 151 (153)
T ss_pred cCcchhccCcccCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhHHhc
Confidence 4678999999999999999999999999999999999999999999999999999999998888877554
No 3
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.88 E-value=2.4e-22 Score=163.94 Aligned_cols=133 Identities=15% Similarity=0.262 Sum_probs=107.5
Q ss_pred cCCCCCChhHhh-cCCCCCCCC--CHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHh
Q 046013 46 GFSQRRHWSELV-DRTAMSRPD--SLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGA----WIFL 118 (215)
Q Consensus 46 ~l~~~RPW~EF~-d~~~fs~P~--s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll~~P~~Ll~l~~l~~~----w~~l 118 (215)
+++++|.|+||+ +.+||..|+ |+++|.+|+.+|+.|||+||+++++.++.+..+.+|..+++.++..++ ..|-
T Consensus 15 ~lpPlRa~ddF~lgS~Rfa~Pd~~D~~kW~nRVisNLLYyQTNYfv~~it~~~l~~f~sp~~iilglivvvlvi~~liwa 94 (188)
T KOG4050|consen 15 ELPPLRALDDFLLGSDRFARPDFNDFKKWNNRVISNLLYYQTNYFVTFITLFLLHGFISPQDIILGLIVVVLVIGTLIWA 94 (188)
T ss_pred CCCcchhHHHhccCcccccCCCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999 899999998 999999999999999999999999999999999999977753333222 2222
Q ss_pred hhccCCCCCeeecceecchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCC
Q 046013 119 YLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPE 182 (215)
Q Consensus 119 ~~~r~~~~~~~i~gr~~~~~~~~~~l~~vsi~ll~lt~~~~~lf~~l~~s~~vvllHAa~R~~~ 182 (215)
.. .++.++.+.++ .+...+++...++.++++++++..++.+++..+++++++||++|.++
T Consensus 95 ~~---~~a~~krmr~~-hp~~~l~gvllv~yfli~v~~~vlv~~F~il~Pv~L~lvHASLRLRn 154 (188)
T KOG4050|consen 95 AS---ADANIKRMRTD-HPLVTLAGVLLVGYFLISVFGGVLVFAFAILFPVLLVLVHASLRLRN 154 (188)
T ss_pred Hh---ccHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 21 22333333333 34556677788889999999999999999999999999999999773
No 4
>COG5130 YIP3 Prenylated rab acceptor 1 and related proteins [Intracellular trafficking and secretion / Signal transduction mechanisms]
Probab=99.88 E-value=2.2e-22 Score=161.17 Aligned_cols=145 Identities=21% Similarity=0.234 Sum_probs=128.9
Q ss_pred HHHHHHhhcCCCCCChhHhhcCCCCCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 046013 38 RLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIF 117 (215)
Q Consensus 38 ~~~~~~~~~l~~~RPW~EF~d~~~fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll~~P~~Ll~l~~l~~~w~~ 117 (215)
..-.+.++.++..+.-+||||..|.|+|++++|+.+|+-.|++||..||..++..+.+|.+++||.+++++.+.+++.+.
T Consensus 17 e~~~s~~q~L~~~~~~~eFfni~rIs~PqNf~eaqsRv~~Nl~rFssnYlaiia~l~iy~ll~nllLlivIgivvaGvyg 96 (169)
T COG5130 17 EIYRSIKQALGDKDVTREFFNIGRISVPQNFNEAQSRVFANLDRFSSNYLAIIAILTIYYLLYNLLLLIVIGIVVAGVYG 96 (169)
T ss_pred HHHHHHHHHhcCcccHHHHhccccccCCcchHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHhhhhheeee
Confidence 44456667788899999999999999999999999999999999999999999999999999999999998888888777
Q ss_pred hhhccCCCCCeeecceecchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCC
Q 046013 118 LYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPEDL 184 (215)
Q Consensus 118 l~~~r~~~~~~~i~gr~~~~~~~~~~l~~vsi~ll~lt~~~~~lf~~l~~s~~vvllHAa~R~~~~l 184 (215)
+.+.| +++++..-+..+..++|..+.++.+++-++.+...+++|..++|.+++..||++..++-.
T Consensus 97 i~kl~--g~~lv~~~~~~~~~~ly~glvcvlip~gffaspI~tllwl~gas~v~vfgHAal~e~p~e 161 (169)
T COG5130 97 IRKLR--GRPLVCNIELEPRSVLYAGLVCVLIPFGFFASPIVTLLWLSGASGVVVFGHAALLEEPLE 161 (169)
T ss_pred hhhcc--cCccccccceeecchhhhhHHHHHHHHHHHHhHHHHHHHHHhcceeEeechHHHcCCccc
Confidence 77766 456776666667778899999999999999999999999999999999999999987655
No 5
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=75.37 E-value=32 Score=33.70 Aligned_cols=57 Identities=26% Similarity=0.412 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhHhhcCCCCCCCCCHHHHHHHHHHhHhhHHHHHHHHHHH
Q 046013 32 FRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGL 92 (215)
Q Consensus 32 ~~~~~s~~~~~~~~~l~~~RPW~EF~d~~~fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~ 92 (215)
.++|+.|.... +..--+..||+.++....=++++...+|.-++++-|+.=|.-+..-
T Consensus 121 l~dfL~Rla~a----i~sGe~~~eFl~~E~~~~~~~y~~~Yer~LeSl~~~~diY~sll~S 177 (527)
T COG1955 121 LADFLDRLAYA----LDSGEDLKEFLEREQDTTMDEYETEYERALESLDVWKDIYVSLLVS 177 (527)
T ss_pred HHHHHHHHHHh----hhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566655544 4566788999988877777889999999999999999999765544
No 6
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=72.19 E-value=19 Score=32.88 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=50.2
Q ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhhhccCCCCCeeecceecchHHHHHHHHHH
Q 046013 69 AEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPF-SLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVL 147 (215)
Q Consensus 69 ~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll~~P~-~Ll~l~~l~~~w~~l~~~r~~~~~~~i~gr~~~~~~~~~~l~~v 147 (215)
++.+.|+.-++.-+ -|....++...++..+++. ..+.+++++++|.|-. .|.-++...+.+--...+...+
T Consensus 90 ~~~k~~~~l~l~l~--~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTg------Gp~PlgY~gLGEi~~~vffG~l 161 (303)
T COG1575 90 QSMKPALILSLALF--LLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTG------GPFPLGYMGLGEIFVGVFFGPL 161 (303)
T ss_pred ccCCHHHHHHHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeecc------CCcCcccCCHHHHHHHHHHHHH
Confidence 34555555555433 2344444444555566676 3444555555554442 3444444555555444444444
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCC
Q 046013 148 TIVVVFLTSVGSLLISALMVGAAIVCAHGAFRVPED 183 (215)
Q Consensus 148 si~ll~lt~~~~~lf~~l~~s~~vvllHAa~R~~~~ 183 (215)
.+..-++...+..-...+..|+.+.++-+..-.-++
T Consensus 162 ~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNN 197 (303)
T COG1575 162 IVLGAYYIQTGRLSWAILLPSLPVGILIANILLANN 197 (303)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 444445555433222234444444444444443333
No 7
>PRK13591 ubiA prenyltransferase; Provisional
Probab=64.83 E-value=76 Score=29.00 Aligned_cols=57 Identities=16% Similarity=0.150 Sum_probs=28.0
Q ss_pred hHhhcC--CCCCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 046013 54 SELVDR--TAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFL 118 (215)
Q Consensus 54 ~EF~d~--~~fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll~~P~~Ll~l~~l~~~w~~l 118 (215)
+|++|. ++.+.|+ |-..|..-...-+.+.+++-+.++...++ .+++++..+.++.|-
T Consensus 78 Nd~~D~eiD~IN~P~-------r~~~s~~~a~~ls~la~llGl~La~~~g~-~ll~ll~~l~g~lYS 136 (307)
T PRK13591 78 DRALDSEEDAVNRSE-------LIGSNKKIGLLVSLLAFLLGTYILAMDGM-LLLAFLPFITGYLYS 136 (307)
T ss_pred hhhccchhhhccCcc-------ccccCHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhc
Confidence 577765 5788885 11123333333344444444444444454 345555555555554
No 8
>PF02300 Fumarate_red_C: Fumarate reductase subunit C; InterPro: IPR003510 Fumarate reductase is a membrane-bound flavoenzyme consisting of four subunits, A-B. A and B comprise the membrane-extrinsic catalytic domain and C and D link the catalytic centres to the electron-transport chain. This family consists of the 15kDa hydrophobic subunit C.; GO: 0016020 membrane; PDB: 1KFY_O 1L0V_O 3P4S_O 2B76_O 3CIR_O 3P4R_C 1KF6_O 3P4P_C 3P4Q_C.
Probab=64.65 E-value=34 Score=27.51 Aligned_cols=49 Identities=20% Similarity=0.422 Sum_probs=23.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHH----hhhccCCCCCeeecceecchHHHHHHHH
Q 046013 97 SLLSHPFSLLVLLCLLGAWIF----LYLFRPSDQPVVLFGRTFSDRETLGALV 145 (215)
Q Consensus 97 ~ll~~P~~Ll~l~~l~~~w~~----l~~~r~~~~~~~i~gr~~~~~~~~~~l~ 145 (215)
..+.||+.++.=++.+++..+ .|.+-++.-++.++|+.++++.+..+.-
T Consensus 61 ~fl~nP~vv~lnliaLaa~L~Ha~TwF~l~Pkam~i~v~~~~v~~~~i~~~~w 113 (129)
T PF02300_consen 61 AFLQNPIVVILNLIALAAALLHAKTWFELAPKAMPIIVGGERVPPRPIVKGLW 113 (129)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHGGGG---EETTEE--SHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHchhhhhhhcCCeeCCHHHHHHHHH
Confidence 456788877753333332211 1222233347888999999887654433
No 9
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=52.90 E-value=87 Score=34.38 Aligned_cols=66 Identities=17% Similarity=0.317 Sum_probs=47.5
Q ss_pred CCChhHhhcC-------CCCCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 046013 50 RRHWSELVDR-------TAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFL 118 (215)
Q Consensus 50 ~RPW~EF~d~-------~~fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll~~P~~Ll~l~~l~~~w~~l 118 (215)
.|....|||+ +|||. |.+.+-.++-..+..|-.|.+-+..++..+ .+.+|++++..+.+..+++++
T Consensus 902 lrapm~FFdtTP~GRILNRFSk--D~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi-~~~~P~fli~~~pl~v~~~~~ 974 (1381)
T KOG0054|consen 902 LRAPMSFFDTTPTGRILNRFSK--DIDTVDVLLPFTLEFFLQSLLNVLGILVVI-SYVTPWFLIAIIPLGVIYYFV 974 (1381)
T ss_pred HhCcchhcCCCCccchhhhccc--chHHHHHhhHHHHHHHHHHHHHHHHHHHHh-hHHhHHHHHHHHHHHHHHHHH
Confidence 6888899987 46663 667777888888888887777666555544 456888888777776665554
No 10
>PRK04987 fumarate reductase subunit C; Provisional
Probab=51.28 E-value=68 Score=25.81 Aligned_cols=50 Identities=16% Similarity=0.331 Sum_probs=27.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH----hhhccCCCCCeeecceecchHHHHHHHH
Q 046013 96 FSLLSHPFSLLVLLCLLGAWIF----LYLFRPSDQPVVLFGRTFSDRETLGALV 145 (215)
Q Consensus 96 ~~ll~~P~~Ll~l~~l~~~w~~----l~~~r~~~~~~~i~gr~~~~~~~~~~l~ 145 (215)
+..+.||+.++.=++.+++..+ .|.+-++.-++.+.|+.++++.+..++-
T Consensus 61 ~~flqnPiv~~lniiaL~a~LlHa~TwF~~~Pka~~i~v~~~~l~~~~ii~~~w 114 (130)
T PRK04987 61 VSFLQNPIVVILNIITLAAALLHTKTWFEMAPKAANIIVKDEKMGPEPIIKALW 114 (130)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHcchhheeeecCccCChHHHHHHHH
Confidence 3557789877763333333221 1222233346788899888877554433
No 11
>PF10724 DUF2516: Protein of unknown function (DUF2516); InterPro: IPR019662 This entry represents a conserved protein in Actinobacteria. The function is not known.
Probab=48.33 E-value=92 Score=23.84 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=22.2
Q ss_pred HHHHHHhhhccCCCCCeeecceecchHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 046013 112 LGAWIFLYLFRPSDQPVVLFGRTFSDRETLGALVVLTIVVVFLTSVGSLLIS 163 (215)
Q Consensus 112 ~~~w~~l~~~r~~~~~~~i~gr~~~~~~~~~~l~~vsi~ll~lt~~~~~lf~ 163 (215)
+..|.++...|..++-..-.||. +| ....++..++..+.+++..+..+++
T Consensus 22 ~~v~Alv~aa~~r~dAF~AadK~-tK-~~Wl~Ilg~a~l~~~l~~~~~~~l~ 71 (100)
T PF10724_consen 22 LAVWALVDAARRRADAFTAADKR-TK-PFWLAILGVAALVGLLFLGPLGFLG 71 (100)
T ss_pred HHHHHHHHHHhCCHhhhHhcccc-cc-hHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34455554444333333333443 33 3344555555555444433444554
No 12
>PRK13603 fumarate reductase subunit C; Provisional
Probab=47.70 E-value=56 Score=26.14 Aligned_cols=52 Identities=13% Similarity=0.249 Sum_probs=28.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH----hhhccCCCCCeeecceecchHHHHHHHHHH
Q 046013 96 FSLLSHPFSLLVLLCLLGAWIF----LYLFRPSDQPVVLFGRTFSDRETLGALVVL 147 (215)
Q Consensus 96 ~~ll~~P~~Ll~l~~l~~~w~~----l~~~r~~~~~~~i~gr~~~~~~~~~~l~~v 147 (215)
+..+.||+.++.=++.+++..+ .|.+-++.-++.+.|+.++++.+..+.-++
T Consensus 57 ~~flqnPivv~lniiaL~a~L~Ha~TwF~~~Pkam~I~v~~~~l~~~~iv~~~wa~ 112 (126)
T PRK13603 57 LDFSANPVVVVLNVVALSFLLLHAVTWFGSAPRAMVIQVRGRRVPARAVLAGHYAA 112 (126)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcCChHHHHHHHHHH
Confidence 3567789877764333333221 122223334677788888887765444333
No 13
>cd00546 QFR_TypeD_subunitC Quinol:fumarate reductase (QFR) Type D subfamily, 15kD hydrophobic subunit C; QFR couples the reduction of fumarate to succinate to the oxidation of quinol to quinone, the opposite reaction to that catalyzed by the related protein, succinate:quinine oxidoreductase (SQR). QFRs oxidize low potential quinols such as menaquinol and are involved in anaerobic respiration with fumarate as the terminal electron acceptor. SQR and QFR share a common subunit arrangement, composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are classified as Type D as they contain two transmembrane subunits (C and D) and no heme groups. The structural arrangement allows efficient electron transfer between the catalytic subunit, through iron-sulfur centers, and the transmembrane subunit containing the electron donor (quinol). The quinone binding site resides in the transmembrane subunits.
Probab=47.67 E-value=60 Score=25.91 Aligned_cols=49 Identities=20% Similarity=0.349 Sum_probs=26.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH----hhhccCCCCCeeecceecchHHHHHHH
Q 046013 96 FSLLSHPFSLLVLLCLLGAWIF----LYLFRPSDQPVVLFGRTFSDRETLGAL 144 (215)
Q Consensus 96 ~~ll~~P~~Ll~l~~l~~~w~~----l~~~r~~~~~~~i~gr~~~~~~~~~~l 144 (215)
+..+.||+.++.=++.+++..+ .|.+-++.-++.+.|+.++++.+..++
T Consensus 57 ~~flqnPiv~~lniiaL~a~L~Ha~TwF~~~Pkam~i~v~~~~l~~~~iv~~~ 109 (124)
T cd00546 57 VSFLQNPIVVLLNIIALAAALLHAKTWFEMAPKVMNIIVKGERVPPEAITKAL 109 (124)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccCChHHHHHHH
Confidence 3456788877763333333221 122223334677788888887655443
No 14
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=38.39 E-value=96 Score=22.34 Aligned_cols=28 Identities=14% Similarity=0.187 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 046013 147 LTIVVVFLTSVGSLLISALMVGAAIVCA 174 (215)
Q Consensus 147 vsi~ll~lt~~~~~lf~~l~~s~~vvll 174 (215)
++.+.=|+++.....+++.+++++++++
T Consensus 23 isfi~Gy~~q~~~~~~~~~~~g~~~~~l 50 (76)
T PF06645_consen 23 ISFIVGYITQSFSYTFYIYGAGVVLTLL 50 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444447777777777777777765554
No 15
>PF02411 MerT: MerT mercuric transport protein; InterPro: IPR003457 MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerA).; GO: 0015097 mercury ion transmembrane transporter activity, 0015694 mercury ion transport, 0016020 membrane
Probab=38.31 E-value=1.4e+02 Score=23.28 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=8.6
Q ss_pred hhHHHHH-HHHHHHHHHHhh
Q 046013 101 HPFSLLV-LLCLLGAWIFLY 119 (215)
Q Consensus 101 ~P~~Ll~-l~~l~~~w~~l~ 119 (215)
+|.++.+ ++++..+|+-+|
T Consensus 51 Rp~fi~~tl~~lg~a~~~~y 70 (116)
T PF02411_consen 51 RPYFIALTLLFLGYAFWRLY 70 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 4544433 344444454455
No 16
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=36.74 E-value=58 Score=33.18 Aligned_cols=34 Identities=38% Similarity=0.634 Sum_probs=22.2
Q ss_pred HHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHhh
Q 046013 86 YVTLLGLVL----AFSLLSHPFSLLVLLCLLGAWIFLY 119 (215)
Q Consensus 86 Y~li~~~l~----~~~ll~~P~~Ll~l~~l~~~w~~l~ 119 (215)
|+.++++++ +..++.||+++.++++++++.+.+|
T Consensus 652 w~~~ll~vLGwNE~m~vLrnPl~~~l~li~~~~~~~~~ 689 (742)
T PF05879_consen 652 WMYLLLLVLGWNEFMAVLRNPLYFTLLLILGGGFYVLY 689 (742)
T ss_pred HHHHHHHHHhHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 444444444 3467889998888777776666565
No 17
>PRK06041 flagellar assembly protein J; Reviewed
Probab=36.24 E-value=4.3e+02 Score=25.99 Aligned_cols=60 Identities=28% Similarity=0.332 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCChhHhhcCCCCCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHH
Q 046013 30 PAFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLV 93 (215)
Q Consensus 30 ~~~~~~~s~~~~~~~~~l~~~RPW~EF~d~~~fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l 93 (215)
+..++|+.+..+.++. --+..||+..+.-..=++.++..+|.-++|.-+..=|+.+++..
T Consensus 141 ~~l~~fl~~l~~~i~s----G~~l~~fL~~e~~~~~~~~~~~~~~~le~L~~~~E~Yvt~lvs~ 200 (553)
T PRK06041 141 ELFADFLDRLAYSIDS----GEPLKEFLKQEQDTVMEDYKTFYERALYSLDVWKDLYVSLLLSV 200 (553)
T ss_pred HHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788887777644 34778888543333445667788999999999999998776653
No 18
>PRK11715 inner membrane protein; Provisional
Probab=32.59 E-value=4.2e+02 Score=25.45 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=16.9
Q ss_pred CCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 046013 62 MSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLL 99 (215)
Q Consensus 62 fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll 99 (215)
|--|-|.-.-.+|- ..|.++++++.+.+++
T Consensus 290 ~~~PVd~Y~~~~RA--------~KYgiLFI~LTF~~fF 319 (436)
T PRK11715 290 LIDPVDQYQKTERA--------VKYAILFIALTFAAFF 319 (436)
T ss_pred EeccccHHHHHHHH--------HhHHHHHHHHHHHHHH
Confidence 34455544555554 4577777776655543
No 19
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=31.65 E-value=10 Score=28.07 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.7
Q ss_pred CCCCCCHHHHHHHHHHhHhhHHHH
Q 046013 62 MSRPDSLAEAYSRIRKNLSYFKVN 85 (215)
Q Consensus 62 fs~P~s~~ea~~Ri~~NL~yF~~N 85 (215)
=.+|+.++++..||.-|=+||--|
T Consensus 61 rRLPdql~~La~RI~Ln~RYYLKn 84 (85)
T cd01785 61 RRLPDQLQNLAERIQLSSRYYLKN 84 (85)
T ss_pred ccCCHHHHHHHHhhcccceEEecc
Confidence 358999999999999999998544
No 20
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=30.33 E-value=86 Score=20.84 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=20.2
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 046013 71 AYSRIRKNLSYFKVNYVTLLGLVLAFSLL 99 (215)
Q Consensus 71 a~~Ri~~NL~yF~~NY~li~~~l~~~~ll 99 (215)
.....+.|+..--.|+.++.+-+++++++
T Consensus 20 ~~~qar~~lq~lfvnf~lilicllli~ii 48 (52)
T TIGR01294 20 MPQQARQNLQNLFINFCLILICLLLICII 48 (52)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456778888888888877766666654
No 21
>PF15187 Augurin: Oesophageal cancer-related gene 4
Probab=29.66 E-value=30 Score=26.84 Aligned_cols=57 Identities=21% Similarity=0.374 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCC----hh-Hhh--cCCCCCCCCCHHHHHHHHHHhHhhHHHHH
Q 046013 30 PAFRAFLSRLSSSIRYGFSQRRH----WS-ELV--DRTAMSRPDSLAEAYSRIRKNLSYFKVNY 86 (215)
Q Consensus 30 ~~~~~~~s~~~~~~~~~l~~~RP----W~-EF~--d~~~fs~P~s~~ea~~Ri~~NL~yF~~NY 86 (215)
..+++|++.++..-++.|..-|| |- .|+ +++.-.+-.+++=|.+|-+.+-.|||..|
T Consensus 26 skAkeFL~~l~R~kR~lWDRsrPdVQQW~qQFlYmGFDEak~E~DlsYWm~~~R~~~~~~QhHY 89 (114)
T PF15187_consen 26 SKAKEFLASLKRQKRQLWDRSRPDVQQWYQQFLYMGFDEAKFEDDLSYWMNRARSGDQYYQHHY 89 (114)
T ss_pred HHHHHHHHHhhhHHHhhhccCCHHHHHHHHHHHHhcchHHHhhhhHHHHHhcCcCccchhhhcc
Confidence 36789999999998889988888 74 666 45544566788899999999999988877
No 22
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=29.07 E-value=5.2e+02 Score=24.76 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=17.1
Q ss_pred CCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 046013 62 MSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLL 99 (215)
Q Consensus 62 fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll 99 (215)
|--|-|.-.-.+|- ..|.++++++.+.+++
T Consensus 284 l~~Pvd~Y~~~~Ra--------~KYgiLFI~LTF~~ff 313 (430)
T PF06123_consen 284 LIEPVDHYQKSERA--------VKYGILFIGLTFLAFF 313 (430)
T ss_pred EeccccHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 44555544555554 3477777776665543
No 23
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.45 E-value=2.9e+02 Score=21.57 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=25.7
Q ss_pred CCCCeeecceecchHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 046013 124 SDQPVVLFGRTFSDRETLGALVV-----LTIVVVFLTSVGSLLISALMVGAAIVC 173 (215)
Q Consensus 124 ~~~~~~i~gr~~~~~~~~~~l~~-----vsi~ll~lt~~~~~lf~~l~~s~~vvl 173 (215)
+.+|.++.|-+.++--..+++.+ +++++.++++.+..+..+.+++.++++
T Consensus 9 N~ePvV~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v 63 (111)
T TIGR03750 9 NREPVVFRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVV 63 (111)
T ss_pred cCCCceecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888887666544433222 334434555544444444444444433
No 24
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=28.36 E-value=1.1e+02 Score=26.40 Aligned_cols=45 Identities=29% Similarity=0.512 Sum_probs=25.0
Q ss_pred HHHhHhhH-HHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q 046013 75 IRKNLSYF-KVNYVT---LLGLVLAFSLLSHPFSLLVLLCLLGAWIFLY 119 (215)
Q Consensus 75 i~~NL~yF-~~NY~l---i~~~l~~~~ll~~P~~Ll~l~~l~~~w~~l~ 119 (215)
.+.+.+-| +.|..+ +.+++.++++.++-.-++.++++.+.|.|..
T Consensus 189 y~~~yk~~~~ln~~ll~~~~~~l~i~s~~t~~~q~la~lvl~~I~iyi~ 237 (248)
T PF11368_consen 189 YEASYKIYFKLNQYLLPILYILLFIYSLLTGENQLLAILVLIIIWIYIN 237 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 34555444 437444 3334455566665555666666667777653
No 25
>PLN02922 prenyltransferase
Probab=27.94 E-value=4.6e+02 Score=23.76 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCeeecceecchHH
Q 046013 104 SLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRE 139 (215)
Q Consensus 104 ~Ll~l~~l~~~w~~l~~~r~~~~~~~i~gr~~~~~~ 139 (215)
.++++++++.+|.|- ..|..+..+.+.+--
T Consensus 126 l~iG~~g~~~~~~Yt------~gP~pl~y~gLGE~~ 155 (315)
T PLN02922 126 ILLLAAAILCGYVYQ------CPPFRLSYKGLGEPL 155 (315)
T ss_pred HHHHHHHHHHHHHHh------cCCcccccCcchHHH
Confidence 333444444444443 245555555554433
No 26
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=27.04 E-value=4.3e+02 Score=23.16 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCC
Q 046013 161 LISALMVGAAIVCAHGAFRVPEDL 184 (215)
Q Consensus 161 lf~~l~~s~~vvllHAa~R~~~~l 184 (215)
..+......+-++.+..+..-+|.
T Consensus 169 ~~~l~~~~~l~~~~~~~i~~~~D~ 192 (289)
T COG0382 169 AWLLLLAAILWTLGYDIIYAIQDI 192 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCc
Confidence 333345555667777777766664
No 27
>PRK13592 ubiA prenyltransferase; Provisional
Probab=26.63 E-value=4.4e+02 Score=24.09 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=11.4
Q ss_pred CCChhHhhcC--CCCCCCC
Q 046013 50 RRHWSELVDR--TAMSRPD 66 (215)
Q Consensus 50 ~RPW~EF~d~--~~fs~P~ 66 (215)
.|--+|++|. ++.++|+
T Consensus 62 gniiNDy~D~EIDrIN~P~ 80 (299)
T PRK13592 62 LRIADDFKDYETDRRLFPH 80 (299)
T ss_pred hHHHHHHhhHHHhhhcCCC
Confidence 3556788865 5677766
No 28
>COG4605 CeuC ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=26.07 E-value=2.1e+02 Score=26.29 Aligned_cols=46 Identities=13% Similarity=0.266 Sum_probs=36.4
Q ss_pred CCChhHhhcCCCCCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Q 046013 50 RRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFS 97 (215)
Q Consensus 50 ~RPW~EF~d~~~fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ 97 (215)
.|+.+.|+ ++.==|+.+..+..|+-.+.+.=.++++.+...++...
T Consensus 144 FrSiSsfm--q~liDPneF~~lQ~~mFAsFn~int~ll~i~a~i~~~~ 189 (316)
T COG4605 144 FRSISSFM--QRLIDPNEFAILQARMFASFNNINTELLAIAAIILLVV 189 (316)
T ss_pred HHHHHHHH--HHHcChHHHHHHHHHHHhhhhccCccHHHHHHHHHHHH
Confidence 36677777 56677999999999999999999999888776655443
No 29
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=24.77 E-value=4e+02 Score=24.04 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=7.8
Q ss_pred CCeeecceecchHHHH
Q 046013 126 QPVVLFGRTFSDRETL 141 (215)
Q Consensus 126 ~~~~i~gr~~~~~~~~ 141 (215)
.|..+..+-+.+-.+.
T Consensus 138 gP~~l~y~gLGE~~v~ 153 (304)
T PRK07419 138 PPFRLGYQGLGEPLCF 153 (304)
T ss_pred CCcccCCCCchHHHHH
Confidence 4555555555544433
No 30
>COG3671 Predicted membrane protein [Function unknown]
Probab=24.46 E-value=3.7e+02 Score=21.47 Aligned_cols=88 Identities=16% Similarity=0.150 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccCCCCCeeecceecchHHHHHH-H-HHHHHHHHHHHhhhHHHH
Q 046013 85 NYVTLLGLVLAFSLLSHPFSLLVLLCLLGAWIFLYLFRPSDQPVVLFGRTFSDRETLGA-L-VVLTIVVVFLTSVGSLLI 162 (215)
Q Consensus 85 NY~li~~~l~~~~ll~~P~~Ll~l~~l~~~w~~l~~~r~~~~~~~i~gr~~~~~~~~~~-l-~~vsi~ll~lt~~~~~lf 162 (215)
||.+++-++.++..++--..+++ ..+.|..|+..+++..-..++--|.-..+ + .++++ ++-+.+.|..+.
T Consensus 22 ~l~~vvY~Ly~~G~v~git~lvg-------vi~AYv~rd~~~~~~~SHy~f~iRTFw~~vl~~iIg~-Llt~lgiGv~i~ 93 (125)
T COG3671 22 KLPIVVYILYLLGAVTGITPLVG-------VIFAYVNRDKADSIAASHYEFLIRTFWLAVLWWIIGL-LLTFLGIGVVIL 93 (125)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH-------HHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45556555555544433111221 12334445444455443333333332221 1 12222 223445677777
Q ss_pred HHHHHHHHHHHHhhccCC
Q 046013 163 SALMVGAAIVCAHGAFRV 180 (215)
Q Consensus 163 ~~l~~s~~vvllHAa~R~ 180 (215)
+++++=.++-++-+-.+.
T Consensus 94 ~AlgvW~i~Riv~G~~yl 111 (125)
T COG3671 94 VALGVWYIYRIVIGFKYL 111 (125)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777776666665555554
No 31
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=24.45 E-value=3.7e+02 Score=25.15 Aligned_cols=34 Identities=12% Similarity=0.257 Sum_probs=23.3
Q ss_pred CCChhHhh-cCCCCCCCCCHHH-HHHHHHHhHhhHHHHH
Q 046013 50 RRHWSELV-DRTAMSRPDSLAE-AYSRIRKNLSYFKVNY 86 (215)
Q Consensus 50 ~RPW~EF~-d~~~fs~P~s~~e-a~~Ri~~NL~yF~~NY 86 (215)
.-|+.-|+ +.+.|+.- ++ +++|+++|+.||..=.
T Consensus 95 ilPf~~~y~es~~~~~~---~k~l~~~l~~n~~~~~~~~ 130 (471)
T PF04791_consen 95 ILPFAQFYYESGDFTPK---GKGLKSSLKENLIYYLIFA 130 (471)
T ss_pred HHHHHHHHHHcCCcccc---cccHHHHHHHHHHHHHHHH
Confidence 47877444 66665532 24 9999999999876443
No 32
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=24.26 E-value=94 Score=20.67 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=18.1
Q ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHH
Q 046013 74 RIRKNLSYFKVNYVTLLGLVLAFSLL 99 (215)
Q Consensus 74 Ri~~NL~yF~~NY~li~~~l~~~~ll 99 (215)
..+.|+..--.|+.++.+-+++++++
T Consensus 23 qa~qnlqelfvnfclilicllli~ii 48 (52)
T PF04272_consen 23 QARQNLQELFVNFCLILICLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678877788888777666665554
No 33
>CHL00114 psbX photosystem II protein X; Reviewed
Probab=23.68 E-value=86 Score=20.10 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=15.5
Q ss_pred HhhhHHHHHHHHHHHHHHHHh
Q 046013 155 TSVGSLLISALMVGAAIVCAH 175 (215)
Q Consensus 155 t~~~~~lf~~l~~s~~vvllH 175 (215)
|.+..+++|++..+.+++++-
T Consensus 2 TpSLsnF~~SL~~Ga~ivvip 22 (39)
T CHL00114 2 TPSLSAFINSLLLGAIIVVIP 22 (39)
T ss_pred ChhHHHHHHHHHHHHHHhHHH
Confidence 456678888888888776644
No 34
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=23.36 E-value=1.9e+02 Score=24.43 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 046013 83 KVNYVTLLGLVLAFSLLSH 101 (215)
Q Consensus 83 ~~NY~li~~~l~~~~ll~~ 101 (215)
...|+++.++++++.....
T Consensus 6 g~~~i~~~~~~~~~~~~~~ 24 (206)
T PRK05305 6 GYPFIAAAALVLLILGLLW 24 (206)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4567777776665543333
No 35
>PRK10263 DNA translocase FtsK; Provisional
Probab=23.33 E-value=1.1e+03 Score=26.38 Aligned_cols=10 Identities=30% Similarity=0.594 Sum_probs=4.8
Q ss_pred CCCCCCCCCC
Q 046013 180 VPEDLFLDEQ 189 (215)
Q Consensus 180 ~~~~l~~de~ 189 (215)
++++-+.|||
T Consensus 206 r~~~~~~~~~ 215 (1355)
T PRK10263 206 RRDDTWVDED 215 (1355)
T ss_pred hcCccccccc
Confidence 3444455554
No 36
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=22.81 E-value=3.9e+02 Score=21.18 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHhHhhHHHHHHH----------HHHHHHHHHHHHhhHHHHHHH
Q 046013 67 SLAEAYSRIRKNLSYFKVNYVT----------LLGLVLAFSLLSHPFSLLVLL 109 (215)
Q Consensus 67 s~~ea~~Ri~~NL~yF~~NY~l----------i~~~l~~~~ll~~P~~Ll~l~ 109 (215)
+.+|..+|+.++.+..+..|.- .+++.+.+.+..+|...+.++
T Consensus 96 ~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l 148 (275)
T PF00664_consen 96 SSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILL 148 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhcccccccccccccc
Confidence 4689999999777665444421 122233334456787655544
No 37
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=22.66 E-value=1.2e+02 Score=22.41 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=12.6
Q ss_pred HHHHH-HHHHHHHHHHHHhhHH
Q 046013 84 VNYVT-LLGLVLAFSLLSHPFS 104 (215)
Q Consensus 84 ~NY~l-i~~~l~~~~ll~~P~~ 104 (215)
=||.. +...+....++.|+..
T Consensus 47 P~Y~g~~~~~~~~~~ll~~~~~ 68 (94)
T PF04140_consen 47 PSYLGNIIWELGGQLLLFNAWL 68 (94)
T ss_dssp HHHHH-HHHHHHHHHHHHT-HH
T ss_pred chHHHHHHHHHHHHHHHHhHHH
Confidence 46777 4555666677788843
No 38
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=22.33 E-value=7e+02 Score=23.93 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH---------HhhHHHHH
Q 046013 84 VNYVTLLGLVLAFSLL---------SHPFSLLV 107 (215)
Q Consensus 84 ~NY~li~~~l~~~~ll---------~~P~~Ll~ 107 (215)
.-|.++++.+.+.+.+ .||+--++
T Consensus 298 ~kYaIlfI~Ltf~afFifE~lt~~~~Hp~QY~L 330 (443)
T COG4452 298 TKYAILFIGLTFMAFFIFEVLTGQRLHPMQYLL 330 (443)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccchHHHHH
Confidence 3467776665555432 38884443
No 39
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=22.16 E-value=1.2e+02 Score=24.25 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=18.6
Q ss_pred HHHHHHHh-HhhHHHHHHHHHHHHHHH
Q 046013 71 AYSRIRKN-LSYFKVNYVTLLGLVLAF 96 (215)
Q Consensus 71 a~~Ri~~N-L~yF~~NY~li~~~l~~~ 96 (215)
.+.|-+.+ +.-|..||.++++.+..+
T Consensus 35 ~t~~~~~~~~sv~~~~y~l~~~~v~~L 61 (122)
T PF04530_consen 35 MTARRETTFLSVLNDNYVLFVCAVCML 61 (122)
T ss_pred HhhhhhcchhhhhhhhHHHHHHHHHHH
Confidence 33444444 889999999988877665
No 40
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=21.95 E-value=2.6e+02 Score=23.44 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=20.1
Q ss_pred CCCCCCCHHHHHHHHHHhH--hhHHHHHHHHHHHHHHHHHHH
Q 046013 61 AMSRPDSLAEAYSRIRKNL--SYFKVNYVTLLGLVLAFSLLS 100 (215)
Q Consensus 61 ~fs~P~s~~ea~~Ri~~NL--~yF~~NY~li~~~l~~~~ll~ 100 (215)
+|-.|++-.....=++.-+ .+.-++|++-+++++++..+.
T Consensus 53 ryLp~RDrGP~Rr~vRD~VDsR~~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 53 RYLPPRDRGPVRRYVRDYVDSRRNIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred hcCCcccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHH
Confidence 4555554444333333322 344567777666655555444
No 41
>PF05777 Acp26Ab: Drosophila accessory gland-specific peptide 26Ab (Acp26Ab); InterPro: IPR008392 This family consists of accessory gland-specific 26Ab peptides or male accessory gland secretory protein 355B from different Drosophila species. Drosophila males, like males of most other insects, transfer a group of specific proteins (Acp26Ab and Acp26Aa in Drosophila) to the females during mating. These proteins are produced primarily in the accessory gland and are likely to influence the female's reproduction [].; GO: 0007617 mating behavior, 0005576 extracellular region
Probab=21.70 E-value=66 Score=23.95 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 046013 85 NYVTLLGLVLAFSLL 99 (215)
Q Consensus 85 NY~li~~~l~~~~ll 99 (215)
||+.+..++.++||.
T Consensus 2 nyf~~l~if~cicl~ 16 (90)
T PF05777_consen 2 NYFVVLCIFSCICLW 16 (90)
T ss_pred cchhhHHHHHHHHHH
Confidence 788777777776654
No 42
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=21.51 E-value=5e+02 Score=23.36 Aligned_cols=33 Identities=18% Similarity=0.469 Sum_probs=17.7
Q ss_pred HHHhHhhHHHHHHH------HHHHHHHHHHHH------hhHHHHH
Q 046013 75 IRKNLSYFKVNYVT------LLGLVLAFSLLS------HPFSLLV 107 (215)
Q Consensus 75 i~~NL~yF~~NY~l------i~~~l~~~~ll~------~P~~Ll~ 107 (215)
-+++++.|+.++.= -...+.+|++++ +|..+..
T Consensus 199 ~r~~~~~Y~~~~l~~~~~~~~~~~v~~y~ly~~~~~~~~~~l~~t 243 (295)
T PRK12324 199 HRKVLEEYSPGFLDFMWTIVATAVLVTYSLYAFESGASSPWMIVT 243 (295)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhHH
Confidence 45566777666543 233345555554 3665544
No 43
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=21.25 E-value=1.4e+02 Score=22.94 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCC
Q 046013 165 LMVGAAIVCAHGAFRVPEDLFLDEQE 190 (215)
Q Consensus 165 l~~s~~vvllHAa~R~~~~l~~de~~ 190 (215)
..++.+++..+ -++-|+...||++
T Consensus 34 ~~~g~~~~~~~--~~~v~~v~eDER~ 57 (111)
T PF09946_consen 34 FLAGILLVYLY--RRRVEDVVEDERT 57 (111)
T ss_pred HHHHHHHHHHH--HHhcCcchhhHHH
Confidence 33444444333 3333555567654
No 44
>PF03522 KCl_Cotrans_1: K-Cl Co-transporter type 1 (KCC1); InterPro: IPR018491 The K-Cl co-transporter (KCC) mediates the coupled movement of K+ and Cl- ions across the plasma membrane of many animal cells. This transport is involved in the regulatory volume decrease in response to cell swelling in red blood cells, and has been proposed to play a role in the vectorial movement of Cl- across kidney epithelia. The transport process involves one for one electroneutral movement of K+ together with Cl-, and, in all known mammalian cells, the net movement is outward []. In neurones, it appears to play a unique role in maintaining low intracellular Cl-concentration, which is required for the functioning of Cl- dependent fast synaptic inhibition, mediated by certain neurotransmitters, such as gamma-aminobutyric acid (GABA) and glycine. Three isoforms of the K-Cl co-transporter have been described, termed KCC1 KCC2, and KCC3, containing 1085, 1116 and 1150 amino acids, respectively. They are predicted to have 12 transmembrane (TM) regions in a central hydrophobic domain, together with hydrophilic N- and C-termini that are likely cytoplasmic. Comparison of their sequences with those of other ion-tranporting membrane proteins reveals that they are part of a new superfamily of cation-chloride co-transporters, which includes the Na-Cl and Na-K-2Cl co-transporters. KCC1 and KCC3 are widely expressed in human tissues, while KCC2 is are expressed only in brain neurones, making it likely that this is the isoform responsible for maintaining low Cl- concentration in neurones [, , ]. KCC1 is widely expressed in human tissues, and when heterologously expressed, possesses the functional characteristics of the well-studied red blood cell K-Cl co-transporter, including stimulation by both swelling and N-ethylmaleimide. Several splice variants have also been identified. KCC3 is widely expressed in human tissues and, like KCC1, is stimulated by both swelling and N-ethylmaleimide. The induction of KCC3 is up-regulated by vascular endothelial growth factor and down-regulated by tumour necrosis factor. Defects in KCC3 are linked to agenesis of the corpus callosum with peripheral neuropathy []. This disorder is characterised by severe progressive sensorimotor neuropathy, mental retardation, dysmorphic features and complete or partial agenesis of the corpus callosum.; GO: 0005215 transporter activity, 0006811 ion transport, 0016020 membrane
Probab=20.94 E-value=45 Score=20.09 Aligned_cols=17 Identities=41% Similarity=0.739 Sum_probs=11.4
Q ss_pred hhccCCCCCCCCCCCCcc
Q 046013 175 HGAFRVPEDLFLDEQEPI 192 (215)
Q Consensus 175 HAa~R~~~~l~~de~~~~ 192 (215)
|..+|. ++++.||+|..
T Consensus 5 ~S~lrl-~SlySDeeeE~ 21 (30)
T PF03522_consen 5 HSILRL-ESLYSDEEEET 21 (30)
T ss_pred cceeee-eccccCccccc
Confidence 555554 57788888754
No 45
>COG4129 Predicted membrane protein [Function unknown]
Probab=20.73 E-value=6.7e+02 Score=23.10 Aligned_cols=50 Identities=26% Similarity=0.315 Sum_probs=28.3
Q ss_pred CCCCCCHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHh
Q 046013 62 MSRPDSLAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLL-SHPFSLLVLLCLLGAWIFL 118 (215)
Q Consensus 62 fs~P~s~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll-~~P~~Ll~l~~l~~~w~~l 118 (215)
-+.++|+..+.+|+-. |-+-+++.+++..++ .+|+.+-+.++++...+..
T Consensus 48 ~t~~~s~~~~~~r~~g-------~~iG~~~a~l~~~l~g~~~~~~~v~~~i~i~~~~~ 98 (332)
T COG4129 48 PTIKRSLKRALQRLLG-------NALGAILAVLFFLLFGQNPIAFGVVLLIIIPLLVL 98 (332)
T ss_pred CcchHHHHHHHHHHHH-------HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 3555566666666655 445555555555444 6888776655554444433
No 46
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=20.52 E-value=5.9e+02 Score=22.35 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhcCCCC----CChhHhhcCCCCCCCCCHHHHHHHHHHhHhhHHHHHHHH
Q 046013 33 RAFLSRLSSSIRYGFSQR----RHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTL 89 (215)
Q Consensus 33 ~~~~s~~~~~~~~~l~~~----RPW~EF~d~~~fs~P~s~~ea~~Ri~~NL~yF~~NY~li 89 (215)
.=|.+.+.|++++++... -+|.+++ ++.-+...|--+++.||-.|-+.+
T Consensus 99 aPF~~~lAE~VE~~l~g~~~~~~~~~~~~--------~~~~r~l~~el~kl~y~l~~~i~l 151 (251)
T PRK04949 99 APFNGLLAEKVEARLTGETLPDTGIAGLV--------KDVPRILKREWQKLAYYLPRAIVL 151 (251)
T ss_pred HHHhHHHHHHHHHHcCCCCCCCCchHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888776542 1233433 233455667778888998886544
No 47
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=20.05 E-value=91 Score=28.77 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=13.9
Q ss_pred CCCCChhHhhc-CCCCCCCCC
Q 046013 48 SQRRHWSELVD-RTAMSRPDS 67 (215)
Q Consensus 48 ~~~RPW~EF~d-~~~fs~P~s 67 (215)
....||+|||| -...+.+.+
T Consensus 38 ~S~~pWs~yFdekedv~i~~~ 58 (343)
T KOG2564|consen 38 YSPVPWSDYFDEKEDVSIDGS 58 (343)
T ss_pred cCCCchHHhhccccccccCCC
Confidence 34578999996 456666663
No 48
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=20.03 E-value=5.6e+02 Score=22.75 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 046013 103 FSLLVLLCLLGAWIF 117 (215)
Q Consensus 103 ~~Ll~l~~l~~~w~~ 117 (215)
+..+++++++.+|.|
T Consensus 111 ~l~lg~~~~~~~~~Y 125 (284)
T TIGR00751 111 FIALGALCIAAAITY 125 (284)
T ss_pred HHHHHHHHHHHhHhh
Confidence 344445545555444
Done!