Query 046013
Match_columns 215
No_of_seqs 116 out of 444
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 13:35:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046013.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046013hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kf6_C Fumarate reductase 15 k 63.2 31 0.0011 26.6 7.5 48 95-142 59-110 (130)
2 1fjk_A Cardiac phospholamban; 33.7 47 0.0016 21.1 3.4 27 73-99 22-48 (52)
3 3arc_X Photosystem II PSBX pro 13.9 1.2E+02 0.0041 18.5 2.3 16 157-172 5-20 (39)
4 3b5x_A Lipid A export ATP-bind 12.9 6.2E+02 0.021 23.1 8.0 20 67-86 120-139 (582)
5 2yl4_A ATP-binding cassette SU 11.8 6.5E+02 0.022 23.0 7.8 18 67-84 117-134 (595)
6 2h8a_A Microsomal glutathione 11.7 2.6E+02 0.0089 21.1 4.3 33 68-100 64-96 (154)
7 3bz1_X Photosystem II PSBX pro 11.2 1.2E+02 0.004 19.6 1.7 22 153-174 11-32 (50)
8 2y1b_A RCSF protein, putative 10.9 1E+02 0.0036 23.6 1.6 23 63-85 66-88 (128)
9 2hdc_A Protein (transcription 9.8 2.1E+02 0.0072 20.5 2.9 20 67-86 24-43 (97)
10 1yod_A Water-solublized phosph 9.4 3E+02 0.01 15.6 3.8 24 75-98 3-26 (30)
No 1
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=63.20 E-value=31 Score=26.60 Aligned_cols=48 Identities=13% Similarity=0.299 Sum_probs=26.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH----hhhccCCCCCeeecceecchHHHHH
Q 046013 95 AFSLLSHPFSLLVLLCLLGAWIF----LYLFRPSDQPVVLFGRTFSDRETLG 142 (215)
Q Consensus 95 ~~~ll~~P~~Ll~l~~l~~~w~~----l~~~r~~~~~~~i~gr~~~~~~~~~ 142 (215)
.+..+.||+.++.=++.+++..+ .|.+-++.-++.++|+.++++.+..
T Consensus 59 fv~fl~nPivvilniiaLaa~L~Ha~TwF~l~Pka~~I~v~~~~~~~~~i~~ 110 (130)
T 1kf6_C 59 FVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIK 110 (130)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGCCCBSSSSBCCSHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHcchhheeeeCCCcCChHHHHH
Confidence 34567799877763333333221 1222233346788888888776543
No 2
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=33.72 E-value=47 Score=21.14 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=20.1
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHH
Q 046013 73 SRIRKNLSYFKVNYVTLLGLVLAFSLL 99 (215)
Q Consensus 73 ~Ri~~NL~yF~~NY~li~~~l~~~~ll 99 (215)
...+.|+.---.|+-++.+.+++++++
T Consensus 22 ~qarqnlqelfvnfclilicllli~ii 48 (52)
T 1fjk_A 22 QQARQNLQNLFINFCLILIFLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888988887777766655
No 3
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=13.94 E-value=1.2e+02 Score=18.52 Aligned_cols=16 Identities=19% Similarity=0.248 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHHH
Q 046013 157 VGSLLISALMVGAAIV 172 (215)
Q Consensus 157 ~~~~lf~~l~~s~~vv 172 (215)
+..+++|++..+.+++
T Consensus 5 SL~nFl~Sl~aG~vvv 20 (39)
T 3arc_X 5 SLKGFFIGLLSGAVVL 20 (39)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445555555555433
No 4
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=12.94 E-value=6.2e+02 Score=23.05 Aligned_cols=20 Identities=20% Similarity=0.016 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHhHhhHHHHH
Q 046013 67 SLAEAYSRIRKNLSYFKVNY 86 (215)
Q Consensus 67 s~~ea~~Ri~~NL~yF~~NY 86 (215)
+.++..+|+.+.+...+..|
T Consensus 120 ~~g~l~~rl~~d~~~i~~~~ 139 (582)
T 3b5x_A 120 STGGLLSRITYDSEQVAGAT 139 (582)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 34789999987776555443
No 5
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=11.84 E-value=6.5e+02 Score=22.97 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHhHhhHHH
Q 046013 67 SLAEAYSRIRKNLSYFKV 84 (215)
Q Consensus 67 s~~ea~~Ri~~NL~yF~~ 84 (215)
+.++..+|+.+.+...+.
T Consensus 117 ~~g~l~~r~~~d~~~i~~ 134 (595)
T 2yl4_A 117 RTGELINRLSSDTALLGR 134 (595)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 458999999876655443
No 6
>2h8a_A Microsomal glutathione S-transferase 1; membrane protein; HET: GSH; 3.20A {Rattus norvegicus} SCOP: f.56.1.1
Probab=11.71 E-value=2.6e+02 Score=21.11 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH
Q 046013 68 LAEAYSRIRKNLSYFKVNYVTLLGLVLAFSLLS 100 (215)
Q Consensus 68 ~~ea~~Ri~~NL~yF~~NY~li~~~l~~~~ll~ 100 (215)
.++..+|..++....-.|+.+...++++..+.-
T Consensus 64 ~~~~~~Ra~rAh~N~~E~~p~F~~~~ll~~~~g 96 (154)
T 2h8a_A 64 TDEKVERVRRAHLNDLENIVPFLGIGLLYSLSG 96 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHTTTSC
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC
Confidence 456789999999888888877666666555443
No 7
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=11.20 E-value=1.2e+02 Score=19.58 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=12.7
Q ss_pred HHHhhhHHHHHHHHHHHHHHHH
Q 046013 153 FLTSVGSLLISALMVGAAIVCA 174 (215)
Q Consensus 153 ~lt~~~~~lf~~l~~s~~vvll 174 (215)
.++.+..+++|++..+.+++.+
T Consensus 11 ~mTpSL~NFl~SlvaG~vVvv~ 32 (50)
T 3bz1_X 11 TITPSLKGFFIGLLSGAVVLGL 32 (50)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666654443
No 8
>2y1b_A RCSF protein, putative outer membrane protein, signal; phosphorelay, mucoidity, colanic acid; HET: I3C; 2.00A {Escherichia coli} PDB: 2l8y_A
Probab=10.91 E-value=1e+02 Score=23.56 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHHHhHhhHHHH
Q 046013 63 SRPDSLAEAYSRIRKNLSYFKVN 85 (215)
Q Consensus 63 s~P~s~~ea~~Ri~~NL~yF~~N 85 (215)
..|.|.+++..+++++..+..+|
T Consensus 66 d~Pasis~Ar~~lr~kAa~~gAN 88 (128)
T 2y1b_A 66 DSPPSIPTARKRMQINASKMKAN 88 (128)
T ss_dssp SCCCCHHHHHHHHHHHHHHTTCS
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC
Confidence 56779999999999999999888
No 9
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=9.80 E-value=2.1e+02 Score=20.51 Aligned_cols=20 Identities=15% Similarity=0.474 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHhHhhHHHHH
Q 046013 67 SLAEAYSRIRKNLSYFKVNY 86 (215)
Q Consensus 67 s~~ea~~Ri~~NL~yF~~NY 86 (215)
+++|..+-|.+|..||+.|+
T Consensus 24 tL~eIY~~i~~~fpyyr~~~ 43 (97)
T 2hdc_A 24 TLSGICEFISNRFPYYREKF 43 (97)
T ss_dssp CHHHHHHHHHHHCHHHHHHC
T ss_pred CHHHHHHHHHHhchhhccCC
Confidence 78999999999999999875
No 10
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=9.43 E-value=3e+02 Score=15.60 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=16.6
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHH
Q 046013 75 IRKNLSYFKVNYVTLLGLVLAFSL 98 (215)
Q Consensus 75 i~~NL~yF~~NY~li~~~l~~~~l 98 (215)
.+.|+..-..|+-++.+-+.++++
T Consensus 3 ArqNlQ~LfvNfcLilICllLi~I 26 (30)
T 1yod_A 3 ARQNLQNLYINRCLREICQELKEI 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888777665555544
Done!