BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046015
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 258 bits (659), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 197/339 (58%), Gaps = 27/339 (7%)
Query: 29 IRGGYWHAHSELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRN 88
++ YW SE P+ +I S+LF++L CAFA +NS T + ++S ++ F FT TV+ RN
Sbjct: 5 VKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQRRN 64
Query: 89 PSVITLLSVWGG----AIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTN 144
PSV TLLS+ GG ++SM + ++R+SFI SSI +AR Y FHGLDL P T
Sbjct: 65 PSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSSATE 124
Query: 145 MTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLT 204
MT GTL EWR+ V +E+ SGK +LLL + SV YP+ ++ +LDW++++
Sbjct: 125 MTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMA 184
Query: 205 FDYYLPTRDNFT---------------------EWLKRGFQAKKLVLGLPYHGYAWTLVN 243
+D+Y P T W++ G AKK VLG PY+GYAW L N
Sbjct: 185 YDFYGPGWSRVTGPPAALFDPSNAGPSGDAGTRSWIQAGLPAKKAVLGFPYYGYAWRLTN 244
Query: 244 PDENPVGSPATGPAITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFD 303
+ + +P TG AI+ DGS+GY I+ FI D GA +VYN + V ++ A T W+ +D
Sbjct: 245 ANSHSYYAPTTGAAISPDGSIGYGQIRKFIVD--NGATTVYNSTVVGDYCYAGTNWIGYD 302
Query: 304 GVETIRSKVSFAKEKGLLGYHVFQLSNDDKWELSSAGMQ 342
++I +KV +AK++GLLGY + + DD LS A Q
Sbjct: 303 DNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAASQ 341
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 202/352 (57%), Gaps = 31/352 (8%)
Query: 29 IRGGYWHAHSELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRN 88
++GGYW S L + I S LF++L CAFA +N + I+ ++ F FT+TV+ +N
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 89 PSVITLLSVWGGAIFSS----MINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTN 144
PSV T LS+ GG S+ M Q ++R+SFI SSI +AR FHGLDL P +
Sbjct: 64 PSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLSAAD 123
Query: 145 MTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLT 204
MT LGTL +EWR + +E+R SG++ LLL + P + ++YP++S+ RNLDWI+++
Sbjct: 124 MTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMA 183
Query: 205 FDYYLPT---------------------RDNFTEWLKRGFQAKKLVLGLPYHGYAWTLVN 243
+D+Y P D W++ G KKLVLG+P++GYAW LVN
Sbjct: 184 YDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVN 243
Query: 244 PDENPVGSPATGPA---ITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWV 300
+ + + +PA G + DGS+ Y I+ +I + A +VYN + V ++ + + W+
Sbjct: 244 ANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDYCYSGSNWI 301
Query: 301 NFDGVETIRSKVSFAKEKGLLGYHVFQLSNDDKWELSSAGMQLL-ITYQSKK 351
++D +T+R+KV++ K +GLLGY + ++ D W LS Q +++Q K
Sbjct: 302 SYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQTWGVSFQEMK 353
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 243 bits (620), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 202/352 (57%), Gaps = 31/352 (8%)
Query: 29 IRGGYWHAHSELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRN 88
++GGYW S L + I S LF++L CAFA +N + I+ ++ F FT+TV+ +N
Sbjct: 4 VKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKN 63
Query: 89 PSVITLLSVWGGAIFSS----MINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTN 144
PSV T LS+ GG S+ M Q ++R+SFI SSI +AR FHGLDL P +
Sbjct: 64 PSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAAD 123
Query: 145 MTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLT 204
MT LGTL +EWR + +E+R SG++ LLL + P + ++YP++S+ RNLDWI+++
Sbjct: 124 MTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMA 183
Query: 205 FDYYLPT---------------------RDNFTEWLKRGFQAKKLVLGLPYHGYAWTLVN 243
+D+Y P D W++ G KKLVLG+P++GYAW LVN
Sbjct: 184 YDFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVN 243
Query: 244 PDENPVGSPATGPA---ITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWV 300
+ + + +PA G + DGS+ Y I+ +I + A +VYN + V ++ + + W+
Sbjct: 244 ANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVE--SRATTVYNATIVGDYCYSGSNWI 301
Query: 301 NFDGVETIRSKVSFAKEKGLLGYHVFQLSNDDKWELSSAGMQLL-ITYQSKK 351
++D +T+R+KV++ K +GLLGY + ++ D W LS Q +++Q K
Sbjct: 302 SYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSRTASQTWGVSFQEMK 353
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 161/347 (46%), Gaps = 53/347 (15%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKH 86
NW + Y + ++ +L ++L+ AFA + + + + +++ N +K
Sbjct: 9 NWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKK 64
Query: 87 RNPSVITLLSV----WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLP--- 139
NP + TLL++ +G F+ M+ ++NR++F+ S+I R Y F GLDL P
Sbjct: 65 MNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQ 124
Query: 140 -DKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALES---VSYPLDSMQR 195
+ + TL + E++ SGK +LLL S +PA ++ Y +D + +
Sbjct: 125 GSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLL---SAAVPAGQTYVDAGYEVDKIAQ 181
Query: 196 NLDWIHVLTFDYY-------------------------LPTRDNFTEWLKRGFQAKKLVL 230
NLD+++++ +D++ L +WL++G A KL+L
Sbjct: 182 NLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLIL 241
Query: 231 GLPYHGYAWTLVNPDENPVGSPAT-----GPAITIDGSVGYKFIKGFIRDYGYGAASVYN 285
G+P +G ++TL + + VG+PAT GP G + Y + + GA
Sbjct: 242 GMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-----KGATKQRI 296
Query: 286 HSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ + WV FD VE+ ++KVS+ K+KGL G V+ L DD
Sbjct: 297 QDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 161/347 (46%), Gaps = 53/347 (15%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKH 86
NW + Y + ++ +L ++L+ AFA + + + + +++ N +K
Sbjct: 9 NWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKK 64
Query: 87 RNPSVITLLSV----WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLP--- 139
NP + TLL++ +G F+ M+ ++NR++F+ S+I R Y F GLDL P
Sbjct: 65 MNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQ 124
Query: 140 -DKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALES---VSYPLDSMQR 195
+ + TL + E++ SGK +LLL S +PA ++ Y +D + +
Sbjct: 125 GSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLL---SAAVPAGQTYVDAGYEVDKIAQ 181
Query: 196 NLDWIHVLTFDYY-------------------------LPTRDNFTEWLKRGFQAKKLVL 230
NLD+++++ +D++ L +WL++G A KL+L
Sbjct: 182 NLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLIL 241
Query: 231 GLPYHGYAWTLVNPDENPVGSPAT-----GPAITIDGSVGYKFIKGFIRDYGYGAASVYN 285
G+P +G ++TL + + VG+PAT GP G + Y + + GA
Sbjct: 242 GMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-----KGATKQRI 296
Query: 286 HSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ + WV FD VE+ ++KVS+ K+KGL G V+ L DD
Sbjct: 297 QDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 161/347 (46%), Gaps = 53/347 (15%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKH 86
NW + Y + ++ +L ++L+ AFA + + + + +++ N +K
Sbjct: 9 NWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKK 64
Query: 87 RNPSVITLLSV----WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLP--- 139
NP + TLL++ +G F+ M+ ++NR++F+ S+I R Y F GLDL P
Sbjct: 65 MNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQ 124
Query: 140 -DKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALES---VSYPLDSMQR 195
+ + TL + E++ SGK +LLL S +PA ++ Y +D + +
Sbjct: 125 GSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLL---SAAVPAGQTYVDAGYEVDKIAQ 181
Query: 196 NLDWIHVLTFDYY-------------------------LPTRDNFTEWLKRGFQAKKLVL 230
NLD+++++ +D++ L +WL++G A KL+L
Sbjct: 182 NLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPASKLIL 241
Query: 231 GLPYHGYAWTLVNPDENPVGSPAT-----GPAITIDGSVGYKFIKGFIRDYGYGAASVYN 285
G+P +G ++TL + + VG+PAT GP G + Y + + GA
Sbjct: 242 GMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-----KGATKQRI 296
Query: 286 HSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ + WV FD VE+ ++KVS+ K+KGL G V+ L DD
Sbjct: 297 QDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 160/347 (46%), Gaps = 53/347 (15%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKH 86
NW + Y + ++ +L ++L+ +AF + + + +++ N +K
Sbjct: 9 NWAQ--YRQGEARFLPKDLDPSLCTHLI--YAFAGMTNHQLSTTEWNDETLYQEFNGLKK 64
Query: 87 RNPSVITLLSV----WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLP--- 139
NP + TLL++ +G F+ M+ ++NR++F+ S+I R Y F GLDL P
Sbjct: 65 MNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQ 124
Query: 140 -DKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALES---VSYPLDSMQR 195
+ + TL + E++ SGK +LLL S +PA ++ Y +D + +
Sbjct: 125 GSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLL---SAAVPAGQTYVDAGYEVDKIAQ 181
Query: 196 NLDWIHVLTFDYY-------------------------LPTRDNFTEWLKRGFQAKKLVL 230
NLD+++++ +D++ L +WL++G A KL+L
Sbjct: 182 NLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLIL 241
Query: 231 GLPYHGYAWTLVNPDENPVGSPAT-----GPAITIDGSVGYKFIKGFIRDYGYGAASVYN 285
G+P +G ++TL + + VG+PAT GP G + Y + + GA
Sbjct: 242 GMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-----KGATKQRI 296
Query: 286 HSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ + WV FD VE+ ++KVS+ K+KGL G V+ L DD
Sbjct: 297 QDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 161/347 (46%), Gaps = 53/347 (15%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKH 86
NW + Y + ++ +L ++L+ AFA + + + + +++ N +K
Sbjct: 9 NWAQ--YRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETLYQEFNGLKK 64
Query: 87 RNPSVITLLSV----WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLP--- 139
NP + TLL++ +G F+ M+ ++NR++F+ S+I R Y F GLDL P
Sbjct: 65 MNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQ 124
Query: 140 -DKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALES---VSYPLDSMQR 195
+ + TL + E++ SGK +LLL S +PA ++ Y +D + +
Sbjct: 125 GSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLL---SAAVPAGQTYVDAGYEVDKIAQ 181
Query: 196 NLDWIHVLTFDYY-------------------------LPTRDNFTEWLKRGFQAKKLVL 230
NLD+++++ +D++ L +WL++G A KL+L
Sbjct: 182 NLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPASKLIL 241
Query: 231 GLPYHGYAWTLVNPDENPVGSPAT-----GPAITIDGSVGYKFIKGFIRDYGYGAASVYN 285
G+P +G ++TL + + VG+PAT GP G + Y + + GA
Sbjct: 242 GMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-----KGATKQRI 296
Query: 286 HSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ + WV FD VE+ ++KVS+ K+KGL G V+ L DD
Sbjct: 297 QDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 149/310 (48%), Gaps = 41/310 (13%)
Query: 57 FAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSV----WGGAIFSSMINQSSN 112
++F N S +I ++ NT+K+RNP++ TLLSV +G FS + + + +
Sbjct: 35 YSFANISNDHIDTWEWNDVTLYGMLNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQS 94
Query: 113 RRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLL 172
RR+FIKS R + F GLDL + P + + TL E +AE E+ + GK QLL
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYPGR-RDKQHFTTLIKEMKAEFIKEA-QPGKKQLL 152
Query: 173 LVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYY--------------------LPTR 212
L SY + + ++LD+I ++T+D++ P R
Sbjct: 153 LSAALSAGKVTIDSSYDIAKISQHLDFISIMTYDFHGAWRGTTGHHSPLFRGQEDASPDR 212
Query: 213 DNFTEW-----LKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAI-----TIDG 262
+ T++ L+ G A KLV+G+P G ++TL + E VG+P +GP I G
Sbjct: 213 FSNTDYAVGYMLRLGAPASKLVMGIPTFGRSFTLAS-SETGVGAPISGPGIPGRFTKEAG 271
Query: 263 SVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLG 322
++ Y I F+R GA + + + WV +D E+++SKV + K++ L G
Sbjct: 272 TLAYYEICDFLR----GATVHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAG 327
Query: 323 YHVFQLSNDD 332
V+ L DD
Sbjct: 328 AMVWALDLDD 337
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 151/325 (46%), Gaps = 46/325 (14%)
Query: 45 IHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFS 104
I L S+L+ +FA I ++ + I SE N++K +NP + LLS+ GG +F
Sbjct: 26 IDPFLCSHLIYSFASIENN--KVIIKDKSEVMLYQTINSLKTKNPKLKILLSI-GGYLFG 82
Query: 105 S-----MINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEV 159
S M++ S++R FI S I R + F GLD+ + PD+ N T L E
Sbjct: 83 SKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWIYPDQKEN-THFTVLIHELAEAF 141
Query: 160 TSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYY----------- 208
+ KS K +LLL + SY ++ + ++LD+I++L+FD++
Sbjct: 142 QKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGH 201
Query: 209 -LPTRDNFTE---------------WLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSP 252
P + + W+ +G ++K+V+G+P +G+++TL + E VG+P
Sbjct: 202 NSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASA-ETTVGAP 260
Query: 253 ATGPAIT-----IDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVET 307
A+GP G + Y I F++ GA + + WV +D V++
Sbjct: 261 ASGPGAAGPITESSGFLAYYEICQFLK----GAKITRLQDQQVPYAVKGNQWVGYDDVKS 316
Query: 308 IRSKVSFAKEKGLLGYHVFQLSNDD 332
+ +KV F K L G ++ + DD
Sbjct: 317 METKVQFLKNLNLGGAMIWSIDMDD 341
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 135/284 (47%), Gaps = 40/284 (14%)
Query: 82 NTVKHRNPSVITLLSV----WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGV 137
NT+K+RNP++ TLLSV +G FS + +++ +RR+FIKS R + F GLDL +
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 138 LPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNL 197
P + + L TL E +AE E+ ++G QLLL Y + + R+L
Sbjct: 120 YPGR-RDKRHLTTLVKEMKAEFIREA-QAGTEQLLLSAAVSAGKIAIDRGYDIAQISRHL 177
Query: 198 DWIHVLTFDYYLPTRDNF------------------------TEWLKRGFQAKKLVLGLP 233
D+I +LT+D++ R + L+ G A KLV+G+P
Sbjct: 178 DFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSRFSNADYAVSYMLRLGAPANKLVMGIP 237
Query: 234 YHGYAWTLVNPDENPVGSPATGPAI-----TIDGSVGYKFIKGFIRDYGYGAASVYNHSY 288
G ++TL + + VG+P +GP I G + Y I F++ GA +
Sbjct: 238 TFGKSFTLAS-SKTDVGAPVSGPGIPGQFTKEKGILAYYEICDFLQ----GATTHRFRDQ 292
Query: 289 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ + + WV +D E++++K + K + L G V+ L DD
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 135/284 (47%), Gaps = 40/284 (14%)
Query: 82 NTVKHRNPSVITLLSV----WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGV 137
NT+K+RNP + TLLSV +G FS++ +++ +RR+FIKS R + F GLDL +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 138 LPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNL 197
P + + L TL E +AE E+ ++G QLLL Y + + R+L
Sbjct: 120 YPGR-RDKRHLTTLVKEMKAEFIREA-QAGTEQLLLSAAVSAGKIAIDRGYDIAQISRHL 177
Query: 198 DWIHVLTFDYYLPTRDNF------------------------TEWLKRGFQAKKLVLGLP 233
D+I +LT+D++ R + L+ G A KLV+G+P
Sbjct: 178 DFISLLTYDFHGAWRQTVGHHSPLFAGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIP 237
Query: 234 YHGYAWTLVNPDENPVGSPATGPAI-----TIDGSVGYKFIKGFIRDYGYGAASVYNHSY 288
G ++TL + + VG+P +GP + G + Y I F+ +GA +
Sbjct: 238 TFGRSFTLAS-SKTDVGAPVSGPGVPGRFTKEKGILAYYEICDFL----HGATTHRFRDQ 292
Query: 289 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ + + WV +D E++++K + K + L G V+ L DD
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 134/284 (47%), Gaps = 40/284 (14%)
Query: 82 NTVKHRNPSVITLLSV----WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGV 137
NT+K+RNP + TLLSV +G FS + +++ +RR+FIKS R + F GLDL +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 138 LPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNL 197
P + + L TL E +AE E+ ++G QLLL Y + + R+L
Sbjct: 120 YPGR-RDKRHLTTLVKEMKAEFIREA-QAGTEQLLLSAAVSAGKIAIDRGYDIAQISRHL 177
Query: 198 DWIHVLTFDYYLPTRDNF------------------------TEWLKRGFQAKKLVLGLP 233
D+I +LT+D++ R + L+ G A KLV+G+P
Sbjct: 178 DFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLRLGAPANKLVMGIP 237
Query: 234 YHGYAWTLVNPDENPVGSPATGPAI-----TIDGSVGYKFIKGFIRDYGYGAASVYNHSY 288
G ++TL + + VG+P +GP I G + Y I F+ +GA +
Sbjct: 238 TFGRSFTLAS-SKTDVGAPVSGPGIPGRFTKEKGILAYYEICDFL----HGATTHRFRDQ 292
Query: 289 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ + + WV +D E++++K + K + L G V+ L DD
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 149/312 (47%), Gaps = 46/312 (14%)
Query: 57 FAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSV----WGGAIFSSMINQSSN 112
++F N S I ++ + NT+K+RNP++ TLLSV +G FS + +++ +
Sbjct: 35 YSFANISNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQS 94
Query: 113 RRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLL 172
RR+FIKS R + F GLDL + P + L TL E +AE E+ ++G QLL
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYP-GWRDKRHLTTLVKEMKAEFVREA-QAGTEQLL 152
Query: 173 LVMTSHHLPALE---SVSYPLDSMQRNLDWIHVLTFDYYLPTRDNF-------------- 215
L S +PA + Y + + R+LD+I +LT+D++ R
Sbjct: 153 L---SAAVPAGKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGS 209
Query: 216 ----------TEWLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAI-----TI 260
+ L+ G A KLV+G+P G ++TL + + VG+P +GP I
Sbjct: 210 SRFSNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLAS-SKTDVGAPISGPGIPGQFTKE 268
Query: 261 DGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGL 320
G++ Y I F+ +GA + + + + WV +D E++++K + K + L
Sbjct: 269 KGTLAYYEICDFL----HGATTHRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQL 324
Query: 321 LGYHVFQLSNDD 332
G V+ L DD
Sbjct: 325 AGAMVWALDLDD 336
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 144/306 (47%), Gaps = 34/306 (11%)
Query: 57 FAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSV----WGGAIFSSMINQSSN 112
++F N S I ++ + NT+K+RNP++ TLLSV +G FS + +++ +
Sbjct: 35 YSFANISNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGGWNYGSQRFSKIASKTQS 94
Query: 113 RRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLL 172
RR+FIKS R + F GLDL + P + L TL E +AE E+ ++G QLL
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLWP-GWRDKRHLTTLVKEMKAEFVREA-QAGTEQLL 152
Query: 173 LVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNF----------------- 215
L Y + + R+LD+I +LT+D++ R
Sbjct: 153 LSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRF 212
Query: 216 -------TEWLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAITIDGSVGYKF 268
+ L+ G A KLV+G+P G ++TL + + VG+P +GP I +K
Sbjct: 213 SNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLAS-SKTDVGAPISGPGIP-GRFTKWKG 270
Query: 269 IKGF--IRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVF 326
I + I D+ +GA + + + + WV +D E++++K + K + L G V+
Sbjct: 271 ILAYYEICDFLHGATTHRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVW 330
Query: 327 QLSNDD 332
L DD
Sbjct: 331 ALDLDD 336
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 87/331 (26%), Positives = 148/331 (44%), Gaps = 49/331 (14%)
Query: 43 AEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFT--NTVKHRNPSVITLLSV--- 97
I L ++L+ AFA + ++ I T EQ ++ N +K +N + TLL++
Sbjct: 23 GNIDPCLCTHLIYAFAGMQNNE----ITYTHEQDLRDYEALNGLKDKNTELKTLLAIGGW 78
Query: 98 -WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFD--- 153
+G A FS+M++ NR+ FI+S I R Y F GL+L P + K LF
Sbjct: 79 KFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLV 138
Query: 154 -EWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTR 212
E R ES + +LLL T + + Y + + ++LD+I V+T+D + P +
Sbjct: 139 KEMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIPELSQSLDYIQVMTYDLHDP-K 197
Query: 213 DNFTE--------------------------WLKRGFQAKKLVLGLPYHGYAWTLVNPDE 246
D +T W G ++KL++G P +G+ + L +P +
Sbjct: 198 DGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPAYGHTFILSDPSK 257
Query: 247 NPVGSP--ATGPA---ITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVN 301
+G+P +TGP G + Y + F+ + GA V++ + + WV
Sbjct: 258 TGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNE---GATEVWDAPQEVPYAYQGNEWVG 314
Query: 302 FDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+D V + + K + K+ L G V+ L DD
Sbjct: 315 YDNVRSFKLKAQWLKDNNLGGAVVWPLDMDD 345
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 142/305 (46%), Gaps = 32/305 (10%)
Query: 57 FAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSV----WGGAIFSSMINQSSN 112
++F N S I ++ + NT+K+RNP++ TLLSV +G FS + +++ +
Sbjct: 35 YSFANISNNEIDTWEWNDVTLYDTLNTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQS 94
Query: 113 RRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLL 172
RR+FIKS R + F GLDL + P + L TL E +AE E+ ++G QLL
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYP-GWRDKRHLTTLVKEMKAEFVREA-QAGTEQLL 152
Query: 173 LVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNF----------------- 215
L Y + + R+LD+I +LT+D++ R
Sbjct: 153 LSAAVTAGKIAIDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRF 212
Query: 216 -------TEWLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAITIDGSVGYKF 268
+ L+ G A KLV+G+P G ++TL + VG+P +GP I +
Sbjct: 213 SNADYAVSYMLRLGAPANKLVMGIPTFGRSYTLASSSTR-VGAPISGPGIPGQFTKEKGI 271
Query: 269 IKGF-IRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQ 327
+ + I D+ +GA + + + + WV +D E++++K + K + L G V+
Sbjct: 272 LAYYEICDFLHGATTHRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWA 331
Query: 328 LSNDD 332
L DD
Sbjct: 332 LDLDD 336
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 134/284 (47%), Gaps = 40/284 (14%)
Query: 82 NTVKHRNPSVITLLSV----WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGV 137
NT+K+RNP + TLLSV +G FS + +++ +RR+FIKS R + F GLDL +
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 138 LPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNL 197
P + + L L E +AE E++ + LL S A++ Y + + R+L
Sbjct: 120 YPGR-RDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDR-GYDIAQISRHL 177
Query: 198 DWIHVLTFDYYLPTRDNF------------------------TEWLKRGFQAKKLVLGLP 233
D+I +LT+D++ R + L+ G A KLV+G+P
Sbjct: 178 DFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLRLGAPANKLVMGIP 237
Query: 234 YHGYAWTLVNPDENPVGSPATGPAI-----TIDGSVGYKFIKGFIRDYGYGAASVYNHSY 288
G ++TL + + VG+P +GP I G + Y I F+ +GA +
Sbjct: 238 TFGRSFTLAS-SKTDVGAPISGPGIPGRFTKEKGILAYYEICDFL----HGATTHRFRDQ 292
Query: 289 VMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ + + WV +D E++++K + K + L G V+ L DD
Sbjct: 293 QVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 143/309 (46%), Gaps = 40/309 (12%)
Query: 57 FAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSV----WGGAIFSSMINQSSN 112
++F N S I ++ + NT+K+RNP + TLLSV +G FS++ +++ +
Sbjct: 35 YSFANISNNEIDTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQS 94
Query: 113 RRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLL 172
RR+FIKS R + F GLDL + P + + L L E +AE E++ + LL
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYPGR-RDKRHLTALVKEMKAEFAREAQAGTERLLL 153
Query: 173 LVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNF----------------- 215
S A++ Y + + R+LD+I +LT+D++ R
Sbjct: 154 SAAVSAGKIAIDR-GYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDGSSRF 212
Query: 216 -------TEWLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAI-----TIDGS 263
+ L+ G A KLV+G+P G ++TL + + G+P +GP I G
Sbjct: 213 SNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGI 271
Query: 264 VGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGY 323
+ Y I F+ +GA + + + + WV +D E++++K + K + L G
Sbjct: 272 LAYYEICDFL----HGATTHRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGA 327
Query: 324 HVFQLSNDD 332
V+ L DD
Sbjct: 328 MVWALDLDD 336
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/309 (27%), Positives = 142/309 (45%), Gaps = 40/309 (12%)
Query: 57 FAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSV----WGGAIFSSMINQSSN 112
++F N S I ++ + NT+K+RNP + TLLSV +G FS + +++ +
Sbjct: 35 YSFANISNNEIDTWEWNDVTLYDTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQS 94
Query: 113 RRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLL 172
RR+FIKS R + F GLDL + P + + L L E +AE E++ + LL
Sbjct: 95 RRTFIKSVPPFLRTHGFDGLDLAWLYPGR-RDKRHLTALVKEMKAEFAREAQAGTERLLL 153
Query: 173 LVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNF----------------- 215
S A++ Y + + R+LD+I +LT+D++ R
Sbjct: 154 SAAVSAGKIAIDR-GYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRF 212
Query: 216 -------TEWLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAI-----TIDGS 263
+ L+ G A KLV+G+P G ++TL + + G+P +GP I G
Sbjct: 213 SNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGI 271
Query: 264 VGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGY 323
+ Y I F+ +GA + + + + WV +D E++++K + K + L G
Sbjct: 272 LAYYEICDFL----HGATTHRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGA 327
Query: 324 HVFQLSNDD 332
V+ L DD
Sbjct: 328 MVWALDLDD 336
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 142/329 (43%), Gaps = 47/329 (14%)
Query: 44 EIHSALFSNLMCAFAFI--NSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSV---- 97
+I+ L ++L+ AFA + N T + + T Q F N +K++N + TLL++
Sbjct: 24 DINPCLCTHLIYAFAGMQNNEITTIEWNDVTLYQAF----NGLKNKNSQLKTLLAIGGWN 79
Query: 98 WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLF----D 153
+G A F++M++ NR++FI S I+ R Y F GLD P + + LF
Sbjct: 80 FGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQ 139
Query: 154 EWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFD------- 206
E R E+++ K +L++ + Y + + + LD+IHV+T+D
Sbjct: 140 EMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEG 199
Query: 207 --------YYLPTRDN----------FTEWLKRGFQAKKLVLGLPYHGYAWTLVNPDENP 248
Y PT W G A+KL++G P +G+ + L NP
Sbjct: 200 YTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTG 259
Query: 249 VGSPAT-----GPAITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFD 303
+G+P + GP G Y I F+++ GA ++ + + WV +D
Sbjct: 260 IGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNVWVGYD 316
Query: 304 GVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
V++ K + K G V+ + DD
Sbjct: 317 NVKSFDIKAQWLKHNKFGGAMVWAIDLDD 345
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 142/329 (43%), Gaps = 47/329 (14%)
Query: 44 EIHSALFSNLMCAFAFI--NSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSV---- 97
+I+ L ++L+ AFA + N T + + T Q F N +K++N + TLL++
Sbjct: 28 DINPCLCTHLIYAFAGMQNNEITTIEWNDVTLYQAF----NGLKNKNSQLKTLLAIGGWN 83
Query: 98 WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLF----D 153
+G A F++M++ NR++FI S I+ R Y F GLD P + + LF
Sbjct: 84 FGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQ 143
Query: 154 EWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFD------- 206
E R E+++ K +L++ + Y + + + LD+IHV+T+D
Sbjct: 144 EMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEG 203
Query: 207 --------YYLPTRDN----------FTEWLKRGFQAKKLVLGLPYHGYAWTLVNPDENP 248
Y PT W G A+KL++G P +G+ + L NP
Sbjct: 204 YTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTG 263
Query: 249 VGSPAT-----GPAITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFD 303
+G+P + GP G Y I F+++ GA ++ + + WV +D
Sbjct: 264 IGAPTSGAGPAGPYAKESGIWAYYEICTFLKN---GATQGWDAPQEVPYAYQGNVWVGYD 320
Query: 304 GVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+++ K + K G V+ + DD
Sbjct: 321 NIKSFDIKAQWLKHNKFGGAMVWAIDLDD 349
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/301 (22%), Positives = 120/301 (39%), Gaps = 51/301 (16%)
Query: 78 VNFTNTVKHRNPSVITLLSVWG---GAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDL 134
+N N +K NP++ T++SV G FS + ++ R F S+++ R Y F G+DL
Sbjct: 110 INQLNKLKQTNPNLKTIISVGGWTWSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDL 169
Query: 135 HGVLP---------DKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALES 185
P + + L + R ++ + GK LL + + A +
Sbjct: 170 DWEYPVSGGLDGNSKRPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGAS--ATYA 227
Query: 186 VSYPLDSMQRNLDWIHVLTFDYY-----------------------LPTRDNFT------ 216
+ L + +DWI+++T+D+ +P + F
Sbjct: 228 ANTELAKIAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQ 287
Query: 217 EWLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAITIDGSVG----YKFIKGF 272
L G A KLVLG+P++G W N TG + G Y +
Sbjct: 288 GHLDAGVPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVGTWEAGSFDFYDLEANY 347
Query: 273 IRDYGYGAASVYNHSYVMNFF--SAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSN 330
I GY +N + + + ++ ++++D E++ K ++ K KGL G ++LS
Sbjct: 348 INKNGY--TRYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSG 405
Query: 331 D 331
D
Sbjct: 406 D 406
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/322 (22%), Positives = 125/322 (38%), Gaps = 77/322 (23%)
Query: 84 VKHRNPSVITLLSVWGGAIFSSMIN--QSSNRRSFIKSSIEMARFYRFH-GLDLHGVLP- 139
+K RNP + + S+ GG + + NR +F+ S + + ++F+ G+D+ P
Sbjct: 238 LKQRNPDLKIIPSIGGGTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWEFPG 297
Query: 140 ---------DKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPL 190
D + L E R + ++G++ L +E V Y
Sbjct: 298 GGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDY-A 356
Query: 191 DSMQRNLDWIHVLTFDYY-----LP----------------------------------T 211
D++Q +D+I +T+D+Y +P T
Sbjct: 357 DAVQY-MDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYT 415
Query: 212 RDNFTEWL-KRGFQAKKLVLGLPYHGYAWTLVNPD-----ENPVGSPATGP-------AI 258
DN + L +G A KLVLG +G W V PD +P+ ATG +
Sbjct: 416 ADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGV 475
Query: 259 TIDGSVGYKFIKGF--------IRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRS 310
DG + YK IK F I + YG + +V N + + + FD ++ +
Sbjct: 476 WEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGEL--ITFDDHRSVLA 533
Query: 311 KVSFAKEKGLLGYHVFQLSNDD 332
K ++AK GL G +++ D+
Sbjct: 534 KGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 125/322 (38%), Gaps = 77/322 (23%)
Query: 84 VKHRNPSVITLLSVWGGAIFSSMIN--QSSNRRSFIKSSIEMARFYRFH-GLDLHGVLP- 139
+K RNP + + S+ G + + NR +F+ S + + ++F+ G+D+ + P
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWMFPG 297
Query: 140 ---------DKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPL 190
D + L E R + ++G++ L +E V Y
Sbjct: 298 GGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDY-A 356
Query: 191 DSMQRNLDWIHVLTFDYY-----LP----------------------------------T 211
D++Q +D+I +T+D+Y +P T
Sbjct: 357 DAVQY-MDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYT 415
Query: 212 RDNFTEWL-KRGFQAKKLVLGLPYHGYAWTLVNPD-----ENPVGSPATGP-------AI 258
DN + L +G A KLVLG +G W V PD +P+ ATG +
Sbjct: 416 ADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGV 475
Query: 259 TIDGSVGYKFIKGF--------IRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRS 310
DG + YK IK F I + YG + +V N + + + FD ++ +
Sbjct: 476 WEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGEL--ITFDDHRSVLA 533
Query: 311 KVSFAKEKGLLGYHVFQLSNDD 332
K ++AK GL G +++ D+
Sbjct: 534 KGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 124/322 (38%), Gaps = 77/322 (23%)
Query: 84 VKHRNPSVITLLSVWGGAIFSSMIN--QSSNRRSFIKSSIEMARFYRFH-GLDLHGVLP- 139
+K RNP + + S+ G + + NR +F+ S + + ++F+ G+D+ P
Sbjct: 238 LKQRNPDLKIIPSIGGWTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDIDWEFPG 297
Query: 140 ---------DKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPL 190
D + L E R + ++G++ L +E V Y
Sbjct: 298 GGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDVDY-A 356
Query: 191 DSMQRNLDWIHVLTFDYY-----LP----------------------------------T 211
D++Q +D+I +T+D+Y +P T
Sbjct: 357 DAVQY-MDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYT 415
Query: 212 RDNFTEWL-KRGFQAKKLVLGLPYHGYAWTLVNPD-----ENPVGSPATGP-------AI 258
DN + L +G A KLVLG +G W V PD +P+ ATG +
Sbjct: 416 ADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGV 475
Query: 259 TIDGSVGYKFIKGF--------IRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRS 310
DG + YK IK F I + YG + +V N + + + FD ++ +
Sbjct: 476 WEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGEL--ITFDDHRSVLA 533
Query: 311 KVSFAKEKGLLGYHVFQLSNDD 332
K ++AK GL G +++ D+
Sbjct: 534 KGNYAKSLGLAGLFSWEIDADN 555
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 112/278 (40%), Gaps = 39/278 (14%)
Query: 84 VKHRNPSVITLLSVWG---GAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPD 140
+K N S+ +LS+ G F + + + R +F K+++E + + F G+D+ P
Sbjct: 98 LKKANRSLKIMLSIGGWTWSTNFPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEYPA 157
Query: 141 KCTNMTKLGTLFDEWRAEVTSESRKSGKS-QLLLVMTSHHLPALESVSYPLDSMQRNLDW 199
T+ + L R E+ S S L + + P+ +V L + LD
Sbjct: 158 SETDANNMVLLLQRVRQELDSYSATYANGYHFQLSIAAPAGPSHYNV-LKLAQLGSVLDN 216
Query: 200 IHVLTFDYY------------------------LPTRDNFTEWLKRGFQAKKLVLGLPYH 235
I+++ +DY T+ ++ G A K++LG+P +
Sbjct: 217 INLMAYDYAGSWDSVSGHQTNLYPSTSNPSSTPFSTKAAVDAYIAAGVPASKIILGMPIY 276
Query: 236 GYAWTLVNPDENPVGSPATG--PAITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFF 293
G A+ + P + G + D V K I D GA Y+
Sbjct: 277 GRAFVGTDGPGKPYSTIGEGSWESGIWDYKVLPKAGATVITDSAAGATYSYD-------- 328
Query: 294 SAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSND 331
S+ T +++D + +R+KVS+AK GL G ++ S D
Sbjct: 329 SSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 117/293 (39%), Gaps = 48/293 (16%)
Query: 83 TVKHRNPSVITLLSVWGGAIFSS---MINQSSNRRSFIKSSIEMARFYRF-HGLDLHGVL 138
+K +P + L S+ GG S + R F+ S E + ++F G+D+
Sbjct: 235 ALKQAHPDLKILPSI-GGWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEF 293
Query: 139 PDKCTNMTKLGT---------LFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYP 189
P LG+ L E RA + S ++G+ L S ++ V+Y
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYN 353
Query: 190 LDSMQRNLDWIHVLTFDYYLP---------TRDNFTEW---------------LKRGFQA 225
+ Q ++D I +++FD+Y T N W L +G +
Sbjct: 354 V--AQNSMDHIFLMSFDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKP 411
Query: 226 KKLVLGLPYHGYAWTLVNPDEN--PVGSPATGPAITI--DGSVGYKFIKG--FIRDYGYG 279
K+V+G +G WT VN +N P ATGP +G V Y+ I G ++ Y
Sbjct: 412 GKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYT 471
Query: 280 AASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ YV F + + FD ++++K + +K L G +++ D+
Sbjct: 472 YDATAEAPYV--FKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 117/292 (40%), Gaps = 48/292 (16%)
Query: 84 VKHRNPSVITLLSVWGGAIFSS---MINQSSNRRSFIKSSIEMARFYRF-HGLDLHGVLP 139
+K +P + L S+ GG S + R F+ S E + ++F G+D+ P
Sbjct: 236 LKQAHPDLKILPSI-GGWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFP 294
Query: 140 DKCTNMTKLGT---------LFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPL 190
LG+ L E RA + S ++G+ L S ++ V+Y +
Sbjct: 295 GGKGANPNLGSPQDGETYVLLMKELRAMLDQLSTETGRKYELTSAISAGKDKIDKVAYNV 354
Query: 191 DSMQRNLDWIHVLTFDYYLP---------TRDNFTEW---------------LKRGFQAK 226
Q ++D I ++++D+Y T N W L +G +
Sbjct: 355 --AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPG 412
Query: 227 KLVLGLPYHGYAWTLVNPDEN--PVGSPATGPAITI--DGSVGYKFIKG--FIRDYGYGA 280
K+V+G +G WT VN +N P ATGP +G V Y+ I G ++ Y
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTY 472
Query: 281 ASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ YV F + + FD ++++K + +K L G +++ D+
Sbjct: 473 DATAEAPYV--FKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 48/293 (16%)
Query: 83 TVKHRNPSVITLLSVWGGAIFSS---MINQSSNRRSFIKSSIEMARFYRF-HGLDLHGVL 138
+K +P + L S+ GG S + R F+ S E + ++F G+D+
Sbjct: 235 ALKQAHPDLKILPSI-GGWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWQF 293
Query: 139 PDKCTNMTKLGT---------LFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYP 189
P LG+ L E RA + S ++G+ L S ++ V+Y
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYN 353
Query: 190 LDSMQRNLDWIHVLTFDYYLP---------TRDNFTEW---------------LKRGFQA 225
+ Q ++D I ++++D+Y T N W L +G +
Sbjct: 354 V--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKP 411
Query: 226 KKLVLGLPYHGYAWTLVNPDEN--PVGSPATGPAITI--DGSVGYKFIKG--FIRDYGYG 279
K+V+G +G WT VN +N P ATGP +G V Y+ I G ++ Y
Sbjct: 412 GKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYT 471
Query: 280 AASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ YV F + + FD ++++K + +K L G +++ D+
Sbjct: 472 YDATAEAPYV--FKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 48/293 (16%)
Query: 83 TVKHRNPSVITLLSVWGGAIFSS---MINQSSNRRSFIKSSIEMARFYRF-HGLDLHGVL 138
+K +P + L S+ GG S + R F+ S E + ++F G+D+
Sbjct: 235 ALKQAHPDLKILPSI-GGWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEF 293
Query: 139 PDKCTNMTKLGT---------LFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYP 189
P LG+ L E RA + S ++G+ L S ++ V+Y
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYN 353
Query: 190 LDSMQRNLDWIHVLTFDYYLP---------TRDNFTEW---------------LKRGFQA 225
+ Q ++D I ++++D+Y T N W L +G +
Sbjct: 354 V--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKP 411
Query: 226 KKLVLGLPYHGYAWTLVNPDEN--PVGSPATGPAITI--DGSVGYKFIKG--FIRDYGYG 279
K+V+G +G WT VN +N P ATGP +G V Y+ I G ++ Y
Sbjct: 412 GKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYT 471
Query: 280 AASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ YV F + + FD ++++K + +K L G +++ D+
Sbjct: 472 YDATAEAPYV--FKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 117/293 (39%), Gaps = 48/293 (16%)
Query: 83 TVKHRNPSVITLLSVWGGAIFSS---MINQSSNRRSFIKSSIEMARFYRF-HGLDLHGVL 138
+K +P + L S+ GG S + R F+ S E + ++F G+D+
Sbjct: 235 ALKQAHPDLKILPSI-GGWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIAWEF 293
Query: 139 PDKCTNMTKLGT---------LFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYP 189
P LG+ L E RA + S ++G+ L S ++ V+Y
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAY- 352
Query: 190 LDSMQRNLDWIHVLTFDYYLP---------TRDNFTEW---------------LKRGFQA 225
+ Q ++D I ++++D+Y T N W L +G +
Sbjct: 353 -NVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKP 411
Query: 226 KKLVLGLPYHGYAWTLVNPDEN--PVGSPATGPAITI--DGSVGYKFIKG--FIRDYGYG 279
K+V+G +G WT VN +N P ATGP +G V Y+ I G ++ Y
Sbjct: 412 GKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYT 471
Query: 280 AASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ YV F + + FD ++++K + +K L G +++ D+
Sbjct: 472 YDATAEAPYV--FKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 117/293 (39%), Gaps = 48/293 (16%)
Query: 83 TVKHRNPSVITLLSVWGGAIFSS---MINQSSNRRSFIKSSIEMARFYRF-HGLDLHGVL 138
+K +P + L S+ GG S + R F+ S E + ++F G+D+ +
Sbjct: 235 ALKQAHPDLKILPSI-GGWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWLF 293
Query: 139 PDKCTNMTKLGT---------LFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYP 189
P LG+ L E RA + S ++G+ L S ++ V+Y
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYN 353
Query: 190 LDSMQRNLDWIHVLTFDYYLP---------TRDNFTEW---------------LKRGFQA 225
+ Q ++D I ++++D+Y T N W L +G +
Sbjct: 354 V--AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKP 411
Query: 226 KKLVLGLPYHGYAWTLVNPDEN--PVGSPATGPAITI--DGSVGYKFIKG--FIRDYGYG 279
K+V+G +G WT VN +N P ATGP +G V Y+ I ++ Y
Sbjct: 412 GKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYT 471
Query: 280 AASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ YV F + + FD ++++K + +K L G +++ D+
Sbjct: 472 YDATAEAPYV--FKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/379 (21%), Positives = 144/379 (37%), Gaps = 89/379 (23%)
Query: 41 PIAEIHSALFSNLMCAFAFINSSTYNIF-INSTSEQFFVNFTN--TVKHRNPSVITLLSV 97
P EI S+L+ +A + + +N + + F+ ++K + P + LLSV
Sbjct: 24 PDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQFSEVTSLKRKYPHLKVLLSV 83
Query: 98 WG---------GAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDL------------HG 136
G + + + FI+S+ E+ + Y F GLDL HG
Sbjct: 84 GGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYGFDGLDLAYQFPKNKPRKVHG 143
Query: 137 VLPDKCTNMTKLGT----------LFDEWRAEVTSESRKSGKSQ-LLLVMTSHHLPALES 185
L ++ KL T L E + + + S ++ LL +T LP + S
Sbjct: 144 DLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDSLRADGFLLSLTV--LPNVNS 201
Query: 186 VSY-PLDSMQRNLDWIHVLTFDYYLPTRD---------------------------NFTE 217
Y + ++ +D++++ TFD+ P R+
Sbjct: 202 TWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHPDGSKDRLAHLNADFQVEY 261
Query: 218 WLKRGFQAKKLVLGLPYHGYAWTLVNP---DENPVGSPATGPAI-----TIDGSVGYKFI 269
WL +GF + K+ LG+ +G AW L + PV +GPA G + Y I
Sbjct: 262 WLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEI 321
Query: 270 KG--------FIRDYGYGAASVYNHSYVMNFFSAKTT--------WVNFDGVETIRSKVS 313
G F++ V + + + + WV++D ++ +K +
Sbjct: 322 CGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPDSASNKAA 381
Query: 314 FAKEKGLLGYHVFQLSNDD 332
+A+ K L G +F LS DD
Sbjct: 382 YARVKNLGGVALFDLSYDD 400
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 124/311 (39%), Gaps = 56/311 (18%)
Query: 84 VKHRNPSVITLLSVWGGAIFSS---MINQSSNRRSFIKSSIEMARFYRF-HGLDLHGVLP 139
+K +P + L S+ GG S + R F+ S E + ++F G+D+ P
Sbjct: 236 LKQAHPDLKILPSI-GGWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFP 294
Query: 140 DKCTNMTKLGT---------LFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPL 190
LG+ L E RA + S ++G+ L S ++ V+Y +
Sbjct: 295 GGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKVAYNV 354
Query: 191 DSMQRNLDWIHVLTFDYYLP---------TRDNFTEW---------------LKRGFQAK 226
Q ++D I ++++D+Y T N W L +G +
Sbjct: 355 --AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLTQGVKPG 412
Query: 227 KLVLGLPYHGYAWTLVNPDEN--PVGSPATGPAITI--DGSVGYKFIKG--FIRDYGYGA 280
K+V+G +G WT VN +N P ATGP +G V Y+ I ++ Y
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTY 472
Query: 281 ASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDDKWEL---- 336
+ YV F + + FD ++++K + +K L G +++ D+ L
Sbjct: 473 DATAEAPYV--FKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSMN 530
Query: 337 ----SSAGMQL 343
+SAG+QL
Sbjct: 531 ASLGNSAGVQL 541
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/292 (22%), Positives = 116/292 (39%), Gaps = 48/292 (16%)
Query: 84 VKHRNPSVITLLSVWGGAIFSS---MINQSSNRRSFIKSSIEMARFYRF-HGLDLHGVLP 139
+K +P + L S+ GG S + R F+ S E + ++F G+D+ P
Sbjct: 236 LKQAHPDLKILPSI-GGWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFP 294
Query: 140 DKCTNMTKLGT---------LFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPL 190
LG+ L E RA + S ++G+ L S ++ V+Y +
Sbjct: 295 GGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKVAYNV 354
Query: 191 DSMQRNLDWIHVLTFDYYLP---------TRDNFTEW---------------LKRGFQAK 226
Q ++D I ++++D+Y T N W L +G +
Sbjct: 355 --AQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLTQGVKPG 412
Query: 227 KLVLGLPYHGYAWTLVNPDEN--PVGSPATGPAITI--DGSVGYKFIKG--FIRDYGYGA 280
K+V+G +G WT VN +N P ATGP +G V Y+ I ++ Y
Sbjct: 413 KIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTY 472
Query: 281 ASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ YV F + + FD ++++K + +K L G +++ D+
Sbjct: 473 DATAEAPYV--FKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 120/304 (39%), Gaps = 48/304 (15%)
Query: 83 TVKHRNPSVITLLSVWGGAIFSS---MINQSSNRRSFIKSSIEMARFYRF-HGLDLHGVL 138
+K +P + L S+ GG S + R F+ S E + ++F G+D+
Sbjct: 258 ALKQAHPDLKILPSI-GGWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEF 316
Query: 139 PDKCTNMTKLGT---------LFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYP 189
P LG+ L E RA + S ++G+ L S ++ V+Y
Sbjct: 317 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKVAY- 375
Query: 190 LDSMQRNLDWIHVLTFDYYLP---------TRDNFTEW---------------LKRGFQA 225
+ Q ++D I ++++D+Y T N W L +G +
Sbjct: 376 -NVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKP 434
Query: 226 KKLVLGLPYHGYAWTLVNPDEN--PVGSPATGPAITI--DGSVGYKFIKG--FIRDYGYG 279
K+V+G +G WT VN +N P ATGP +G V Y+ I ++ Y
Sbjct: 435 GKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYT 494
Query: 280 AASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDDKWELSSA 339
+ YV F + + FD ++++K + +K L G +++ D+ L+S
Sbjct: 495 YDATAEAPYV--FKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNGDILNSM 552
Query: 340 GMQL 343
L
Sbjct: 553 NASL 556
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 116/293 (39%), Gaps = 48/293 (16%)
Query: 83 TVKHRNPSVITLLSVWGGAIFSS---MINQSSNRRSFIKSSIEMARFYRF-HGLDLHGVL 138
+K +P + L S+ GG S + R F+ S E + ++F G+D+
Sbjct: 235 ALKQAHPDLKILPSI-GGWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEF 293
Query: 139 PDKCTNMTKLGT---------LFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYP 189
P LG+ L E RA + S ++G+ L S ++ V+Y
Sbjct: 294 PGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAY- 352
Query: 190 LDSMQRNLDWIHVLTFDYYLP---------TRDNFTEW---------------LKRGFQA 225
+ Q ++D I ++++ +Y T N W L +G +
Sbjct: 353 -NVAQNSMDHIFLMSYAFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKP 411
Query: 226 KKLVLGLPYHGYAWTLVNPDEN--PVGSPATGPAITI--DGSVGYKFIKG--FIRDYGYG 279
K+V+G +G WT VN +N P ATGP +G V Y+ I G ++ Y
Sbjct: 412 GKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYT 471
Query: 280 AASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332
+ YV F + + FD ++++K + +K L G +++ D+
Sbjct: 472 YDATAEAPYV--FKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 52/256 (20%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNT--- 83
NW G H +LP+ + L+ AFA + T +++ + ++
Sbjct: 51 NWAIYGRNHNPQDLPVERLTHVLY-----AFANVRPETGEVYMTDSWADIEKHYPGDSWS 105
Query: 84 ---------------VKHRNPSVITLLSVWG---GAIFSSMINQSSNRRSFIKSSIEMAR 125
+K +N ++ LLS+ G F+ + + R++F K+++++ +
Sbjct: 106 DTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKNFAKTAVKLLQ 165
Query: 126 FYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSES-RKSGKSQLLLVMTSHHLPALE 184
F GLD+ P+ L E R + S S +G LL + S P
Sbjct: 166 DLGFDGLDIDWEYPENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGPDKI 225
Query: 185 SVSYPLDSMQRNLDWIHVLTFDYY------------------------LPTRDNFTEWLK 220
V + L M + LD+ +++ +DY T+ +
Sbjct: 226 KVLH-LKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRA 284
Query: 221 RGFQAKKLVLGLPYHG 236
G A K+VLG+P +G
Sbjct: 285 GGVPANKIVLGMPLYG 300
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/320 (20%), Positives = 120/320 (37%), Gaps = 75/320 (23%)
Query: 83 TVKHRNPSVITLLSV--WGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLH----- 135
++ +NP + LLSV WG FS + +R FI+S+ ++ + Y G+DL
Sbjct: 100 ALRKQNPDLKVLLSVGGWGARGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFPV 159
Query: 136 ----GVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLD 191
G++ + + L R V G+ +L+ + + + +S +
Sbjct: 160 NGAWGLVASQPADRDNFTALLKSLREAV-------GEQKLVTIAVGANAESPKSW-VDVK 211
Query: 192 SMQRNLDWIHVLTFDYYLPTR------------------DNFT------EWLKRGFQAKK 227
++ L++I++ T+D T+ D ++ +L G + +
Sbjct: 212 AVAPVLNYINLXTYDXAYGTQYFNSNLYDSSHWPTVAAADKYSADFVVNNYLAAGLKPSQ 271
Query: 228 LVLGLPYHGYA----------WTLVNPDENPVGSPATGP-AITIDGSVGYKFIKGFIRDY 276
LG+ ++G WT + NPV P GP I + S+GY K Y
Sbjct: 272 XNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTYVKY 331
Query: 277 GYGAASVYNHSYVMNFFS------AKTTWVNFDGVE-------------TIRSKVSFAKE 317
+ N F+ AK W++ E ++ K + K
Sbjct: 332 NDIVGKLLNDP--QKRFTEHWDDEAKVPWLSVQSAEGKPLFALSYENPRSVAIKADYIKA 389
Query: 318 KGLLGYHVFQLSNDDKWELS 337
KGL G ++ DD+ +L+
Sbjct: 390 KGLAGAXFWEYGADDQNQLA 409
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/256 (20%), Positives = 96/256 (37%), Gaps = 52/256 (20%)
Query: 27 NWIRGGYWHAHSELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNT--- 83
NW G H +LP+ + L+ AFA + T +++ + ++
Sbjct: 13 NWAIYGRNHNPQDLPVERLTHVLY-----AFANVRPETGEVYMTDSWADIEKHYPGDSWS 67
Query: 84 ---------------VKHRNPSVITLLSVWG---GAIFSSMINQSSNRRSFIKSSIEMAR 125
+K +N ++ LLS+ G F+ + + R++F K+++++ +
Sbjct: 68 DTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKNFAKTAVKLLQ 127
Query: 126 FYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSES-RKSGKSQLLLVMTSHHLPALE 184
F GLD+ P+ L E R + S S +G LL + S P
Sbjct: 128 DLGFDGLDIDWEYPENDQQANDFVLLLREVRTALDSYSAANAGGQHFLLTVASPAGPDKI 187
Query: 185 SVSYPLDSMQRNLDWIHVLTFDYY------------------------LPTRDNFTEWLK 220
V + L M + LD+ +++ +DY T+ +
Sbjct: 188 KVLH-LKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRA 246
Query: 221 RGFQAKKLVLGLPYHG 236
G A K+VLG+P +G
Sbjct: 247 GGVPANKIVLGMPLYG 262
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 36/180 (20%)
Query: 51 SNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWG----------G 100
SNL CA ++ N + VN +K NPS+ + S+ G
Sbjct: 56 SNLECA--------WDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSH 107
Query: 101 AIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVT 160
A + + + ++R F +S + + + Y F G+D++ P + + E R +
Sbjct: 108 ANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYP-QAAEVDGFIAALQEIRTLLN 166
Query: 161 SESRKSGKSQLLLVMT----------SHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLP 210
++ G+ L +T S + L + P LD+I+++T+D P
Sbjct: 167 QQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAP-------LDYINLMTYDLAGP 219
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 36/180 (20%)
Query: 51 SNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWG----------G 100
SNL CA ++ N + VN +K NPS+ + S+ G
Sbjct: 56 SNLECA--------WDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSH 107
Query: 101 AIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVT 160
A + + + ++R F +S + + + Y F G+D++ P + + E R +
Sbjct: 108 ANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYP-QAAEVDGFIAALQEIRTLLN 166
Query: 161 SESRKSGKSQLLLVMT----------SHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLP 210
++ G+ L +T S + L + P LD+I+++T+D P
Sbjct: 167 QQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAP-------LDYINLMTYDLAGP 219
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 217 EWLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSPAT--GPAITIDGSVGYKFIKGFIR 274
++L G K+L LGL +G WT + +P G PAT P + Y +K
Sbjct: 301 KYLAAGIDPKQLGLGLAAYGRGWTGAK-NVSPWG-PATDGAPGTYETANEDYDKLKTLGT 358
Query: 275 DYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDDKW 334
D+ Y AA+ Y T W ++D + T + K + KGL G ++LS D
Sbjct: 359 DH-YDAATGSAWRY------DGTQWWSYDNIATTKQKTDYIVSKGLGGGMWWELSGDRNG 411
Query: 335 ELSSA 339
EL A
Sbjct: 412 ELVGA 416
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 36/180 (20%)
Query: 51 SNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWG----------G 100
SNL CA ++ N + VN +K NPS+ + S+ G
Sbjct: 55 SNLECA--------WDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSH 106
Query: 101 AIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVT 160
A + + + ++R F +S + + + Y F G+D+ P + + E R +
Sbjct: 107 ANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYP-QAAEVDGFIAALQEIRTLLN 165
Query: 161 SESRKSGKSQLLLVMT----------SHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLP 210
++ G+ L +T S + L + P LD+I+++T+D P
Sbjct: 166 QQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAP-------LDYINLMTYDLAGP 218
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 36/180 (20%)
Query: 51 SNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWG----------G 100
SNL CA ++ N + VN +K NPS+ + S+ G
Sbjct: 56 SNLECA--------WDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSH 107
Query: 101 AIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVT 160
A + + + ++R F +S + + + Y F G+D+ P + + E R +
Sbjct: 108 ANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYP-QAAEVDGFIAALQEIRTLLN 166
Query: 161 SESRKSGKSQLLLVMT----------SHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLP 210
++ G+ L +T S + L + P LD+I+++T+D P
Sbjct: 167 QQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAP-------LDYINLMTYDLAGP 219
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 36/180 (20%)
Query: 51 SNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWG----------G 100
SNL CA ++ N + VN +K NPS+ + S+ G
Sbjct: 56 SNLECA--------WDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSH 107
Query: 101 AIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVT 160
A + + + ++R F +S + + + Y F G+D+ P + + E R +
Sbjct: 108 ANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYP-QAAEVDGFIAALQEIRTLLN 166
Query: 161 SESRKSGKSQLLLVMT----------SHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLP 210
++ G+ L +T S + L + P LD+I+++T+D P
Sbjct: 167 QQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAP-------LDYINLMTYDLAGP 219
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 69/180 (38%), Gaps = 36/180 (20%)
Query: 51 SNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWG----------G 100
SNL CA ++ N + VN +K NPS+ + S+ G
Sbjct: 56 SNLECA--------WDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSH 107
Query: 101 AIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVT 160
A + + + ++R F +S + + + Y F G+D+ P + + E R +
Sbjct: 108 ANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYP-QAAEVDGFIAALQEIRTLLN 166
Query: 161 SESRKSGKSQLLLVMT----------SHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLP 210
++ G+ L +T S + L + P LD+I+++T+D P
Sbjct: 167 QQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAP-------LDYINLMTYDLAGP 219
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 36/180 (20%)
Query: 51 SNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWG----------G 100
SNL CA ++ N + VN +K NPS+ + S+ G
Sbjct: 56 SNLECA--------WDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSH 107
Query: 101 AIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVT 160
A + + + ++R F +S + + + Y F G+++ P + + E R +
Sbjct: 108 ANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYP-QAAEVDGFIAALQEIRTLLN 166
Query: 161 SESRKSGKSQLLLVMT----------SHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLP 210
++ G+ L +T S + L + P LD+I+++T+D P
Sbjct: 167 QQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAP-------LDYINLMTYDLAGP 219
>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant
Length = 360
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLE--------KMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPRDQSFESRDLLIDEWKS 339
>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant
Length = 360
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLE--------KMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPQDQSFESRDLLIDEWKS 339
>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l)
Activating Mutant
Length = 367
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 257 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLE--------KMLVLDSDKRITAAQ 308
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V ++ L DEW++
Sbjct: 309 ALAHAYFAQYHDPDDEPVADPYDQSLESRDLLIDEWKS 346
>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580
pdb|3GCQ|A Chain A, Human P38 Map Kinase In Complex With Rl45
pdb|3GCS|A Chain A, Human P38 Map Kinase In Complex With Sorafenib
pdb|3GCV|A Chain A, Human P38 Map Kinase In Complex With Rl62
pdb|3HV3|A Chain A, Human P38 Map Kinase In Complex With Rl49
pdb|3IW5|A Chain A, Human P38 Map Kinase In Complex With An Indole Derivative
pdb|3IW6|A Chain A, Human P38 Map Kinase In Complex With A Benzylpiperazin-
Pyrrol
pdb|3IW7|A Chain A, Human P38 Map Kinase In Complex With An Imidazo-Pyridine
pdb|3IW8|A Chain A, Structure Of Inactive Human P38 Map Kinase In Complex With
A Thiazole-Urea
pdb|3HUB|A Chain A, Human P38 Map Kinase In Complex With Scios-469
pdb|3L8S|A Chain A, Human P38 Map Kinase In Complex With Cp-547632
pdb|3LFB|A Chain A, Human P38 Map Kinase In Complex With Rl98
pdb|3LFC|A Chain A, Human P38 Map Kinase In Complex With Rl99
pdb|3LFD|A Chain A, Human P38 Map Kinase In Complex With Rl113
pdb|3LFE|A Chain A, Human P38 Map Kinase In Complex With Rl116
pdb|3LFF|A Chain A, Human P38 Map Kinase In Complex With Rl166
pdb|3PG3|A Chain A, Human P38 Map Kinase In Complex With Rl182
Length = 360
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLE--------KMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V ++ L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSLESRDLLIDEWKS 339
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 225 AKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAITIDGSVGYKFIKGFIRDYGYGAASVY 284
++K+++G+P +GY W + P AI+ ++ R Y A Y
Sbjct: 214 SRKIIIGVPLYGYDWII------PYQPGTVASAISNQNAIE--------RAMRYQAPIQY 259
Query: 285 NHSYVMNFF-----SAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLS 329
+ Y FF +T V F+GV ++ K+ +E L +QL+
Sbjct: 260 SAEYQSPFFRYSDQQGRTHEVWFEGVRSMSRKMQIVREYRLQAIGAWQLT 309
>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant
Length = 360
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLE--------KMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPTDQSFESRDLLIDEWKS 339
>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P-
Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl-
Pyridin-3-Yl)naphthalen-1-Yl]urea
pdb|3CTQ|A Chain A, Structure Of Map Kinase P38 In Complex With A
1-O-Tolyl-1,2, 3-Triazole-4-Carboxamide
Length = 348
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 246 ISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 297
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 298 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 335
>pdb|1A7K|A Chain A, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|B Chain B, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|C Chain C, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1A7K|D Chain D, Glycosomal Glyceraldehyde-3-Phosphate Dehydrogenase In A
Monoclinic Crystal Form
pdb|1I32|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I32|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|A Chain A, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|B Chain B, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|C Chain C, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|D Chain D, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|E Chain E, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
pdb|1I33|F Chain F, Leishmania Mexicana Glyceraldehyde-3-Phosphate
Dehydrogenase In Complex With Inhibitors
Length = 360
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 156 RAEVTSESRKSGKS---QLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTR 212
R + T E+ KS S +LV+ H + +++ P D L W L DY + +
Sbjct: 58 RPKYTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPAD-----LPWGK-LGVDYVIEST 111
Query: 213 DNFTEWLKRGFQ----AKKLVLGLPYHGYAWTLV 242
FT+ LK AKK+V+ P G A T+V
Sbjct: 112 GLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIV 145
>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655
pdb|1P38|A Chain A, The Structure Of The Map Kinase P38 At 2.1 Angstoms
Resolution
Length = 379
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 269 ISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 320
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 321 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 358
>pdb|1GYP|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYP|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde-3-Phosphate
Dehydrogenase From Leishmania Mexicana: Implications For
Structure-Based Drug Design And A New Position For The
Inorganic Phosphate Binding Site
pdb|1GYQ|A Chain A, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|B Chain B, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|C Chain C, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
pdb|1GYQ|D Chain D, Crystal Structure Of Glycosomal Glyceraldehyde From
Leishmania Mexicana In Complex With N6-Benzyl-Nad
Length = 358
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 156 RAEVTSESRKSGKS---QLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTR 212
R + T E+ KS S +LV+ H + +++ P D L W L DY + +
Sbjct: 58 RPKYTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPAD-----LPWGK-LGVDYVIEST 111
Query: 213 DNFTEWLKRGFQ----AKKLVLGLPYHGYAWTLV 242
FT+ LK AKK+V+ P G A T+V
Sbjct: 112 GLFTDKLKAEGHIKGGAKKVVISAPASGGAKTIV 145
>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk
Docking Partner
Length = 380
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 270 ISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 321
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 322 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 359
>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase
Length = 380
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 270 ISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 321
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 322 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 359
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 25/105 (23%)
Query: 227 KLVLGLPYHGYAWTLVNPDENPVGSPATGPAITIDGSVGYKFIKGFIRDYGYGAASVYNH 286
K+V GLP++GY+W +E+ G+ +D G ++ G ++ G AA N
Sbjct: 205 KIVGGLPFYGYSW-----EESLQGA--------VDDVRGIRY-SGILKHLGNEAADKDN- 249
Query: 287 SYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSND 331
KT ++G TI +K F KE G ++QL D
Sbjct: 250 -------IGKTY---YNGRPTIANKCKFIKENDYAGVXIWQLFQD 284
>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In
Phosphorylated P38a And In Solution
Length = 370
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 260 ISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 311
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 312 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 349
>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
pdb|2EWA|A Chain A, Dual Binding Mode Of Pyridinylimidazole To Map Kinase P38
pdb|1A9U|A Chain A, The Complex Structure Of The Map Kinase P38SB203580
pdb|3HA8|A Chain A, The Complex Structure Of The Map Kinase P38COMPOUND 14B
Length = 379
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 269 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 320
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 321 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 358
>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715
pdb|3ZSH|A Chain A, X-Ray Structure Of P38alpha Bound To Scio-469
pdb|3ZSI|A Chain A, X-Ray Structure Of P38alpha Bound To Vx-745
pdb|3ZS5|A Chain A, Structural Basis For Kinase Selectivity Of Three Clinical
P38alpha Inhibitors
Length = 362
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 252 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 303
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 304 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 341
>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With
Inhibitor Pg-892579
pdb|2GTN|A Chain A, Mutated Map Kinase P38 (mus Musculus) In Complex With
Inhbitor Pg-951717
Length = 348
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 246 ISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 297
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 298 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 335
>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499
pdb|3FKO|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3668
pdb|3FLN|C Chain C, P38 Kinase Crystal Structure In Complex With R1487
Length = 372
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 262 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 313
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 314 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 351
>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
pdb|3E93|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl
Amide Inhibitor
Length = 371
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 261 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 312
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 313 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 350
>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With
Inhibitor Pg-874743
pdb|2GHM|A Chain A, Mutated Map Kinase P38 (Mus Musculus) In Complex With
Inhbitor Pg-895449
Length = 348
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 246 ISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 297
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 298 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 335
>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine
pdb|4AA5|A Chain A, P38alpha Map Kinase Bound To Cmpd 33
Length = 365
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 255 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 306
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 307 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 344
>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38)
Length = 360
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1-
Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3-
Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide
Length = 380
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 270 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 321
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 322 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 359
>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955
Length = 350
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 248 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 299
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 300 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 337
>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor
Length = 383
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 273 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 324
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 325 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 362
>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase
Length = 362
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 252 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 303
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 304 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 341
>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBG|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
pdb|3OC1|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|2OZA|B Chain B, Structure Of P38alpha Complex
pdb|3P78|A Chain A, P38 Inhibitor-Bound
pdb|3P79|A Chain A, P38 Inhibitor-Bound
pdb|3P7A|A Chain A, P38 Inhibitor-Bound
pdb|3P7B|A Chain A, P38 Inhibitor-Bound
pdb|3P7C|A Chain A, P38 Inhibitor-Bound
pdb|3P5K|A Chain A, P38 Inhibitor-Bound
Length = 366
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 256 ISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 307
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 308 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 345
>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195
Length = 365
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 255 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 306
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 307 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 344
>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Nuclear Substrate Mef2a
pdb|1LEZ|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The
Docking Site On Its Activator Mkk3b
Length = 360
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLAQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk
Docking Peptide
Length = 362
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 252 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 303
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 304 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 341
>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole
Inhibitor
Length = 372
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 262 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 313
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 314 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 351
>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8U|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195
pdb|3FKL|A Chain A, P38 Kinase Crystal Structure In Complex With Ro9552
pdb|3FKN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro7125
pdb|3FL4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro5634
pdb|3FLQ|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((S)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin
pdb|3FLS|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-((R)-2-Methanesulfonyl-1-Methyl-
Ethylamino)-8-Methyl-8h-Pyrido[2,3-D]pyrimidin-7-One
pdb|3FLW|A Chain A, P38 Kinase Crystal Structure In Complex With Pamapimod
pdb|3FLY|A Chain A, P38 Kinase Crystal Structure In Complex With 6-(2,4-
Difluoro-Phenoxy)-2-Isopropylamino-8-Methyl-8h-Pyrido[2,
3- D]pyrimidin-7-One
pdb|3FLZ|A Chain A, P38 Kinase Crystal Structure In Complex With
8-Methyl-6-Phenoxy-2-
(Tetrahydro-Pyran-4-Ylamino)-8h-Pyrido[2,
3-D]pyrimidin-7-One
pdb|3FMH|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((R)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FMJ|A Chain A, P38 Kinase Crystal Structure In Complex With
4-(5-Methyl-3-Phenyl- Isoxazol-4-Yl)-Pyrimidin-2-Ylamine
pdb|3FMK|A Chain A, P38 Kinase Crystal Structure In Complex With
6-(2,4-Difluoro-Phenoxy)-
8-Methyl-2-((S)-1-Methyl-2-Tetrazol-2-Yl-Ethylamino)-8h-
Pyrido[2,3- D]pyrimidin-7-One
pdb|3FML|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6224
pdb|3FMM|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6226
pdb|3FMN|A Chain A, P38 Kinase Crystal Structure In Complex With Ro2530
pdb|3FSF|A Chain A, P38 Kinase Crystal Structure In Complex With 3-(2,6-
Dichloro-Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-
Phenylamino]-
1-Methyl-3,4-Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3FSK|A Chain A, P38 Kinase Crystal Structure In Complex With Ro6257
Length = 372
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 262 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 313
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 314 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 351
>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376
pdb|3NNV|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp437
pdb|3NNW|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp802
Length = 354
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A
Pyrrole-2- Carboxamide Inhibitor
Length = 371
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 261 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 312
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 313 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 350
>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3O8T|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg-Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121
Length = 362
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 252 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 303
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 304 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 341
>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In
Complex With P38 Map Kinase
Length = 360
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
Length = 360
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex
pdb|2QD9|A Chain A, P38 Alpha Map Kinase Inhibitor Based On Heterobicyclic
Scaffolds
pdb|2RG5|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11b
pdb|2RG6|A Chain A, Phenylalanine Pyrrolotriazine P38 Alpha Map Kinase
Inhibitor Compound 11j
pdb|3C5U|A Chain A, P38 Alpha Map Kinase Complexed With A Benzothiazole Based
Inhibitor
pdb|3BV2|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 30
pdb|3BV3|A Chain A, Morpholino Pyrrolotriazine P38 Alpha Map Kinase Inhibitor
Compound 2
pdb|3BX5|A Chain A, P38 Alpha Map Kinase Complexed With Bms-640994
pdb|3L8X|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Pyrimidine
Based Inhibitor
pdb|3NWW|A Chain A, P38 Alpha Kinase Complexed With A
2-Aminothiazol-5-Yl-Pyrimidine Based Inhibitor
pdb|3MVL|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVL|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7k
pdb|3MVM|A Chain A, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3MVM|B Chain B, P38 Alpha Map Kinase Complexed With Pyrrolotriazine
Inhibitor 7v
pdb|3OCG|A Chain A, P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based
Inhibitor
pdb|3S4Q|A Chain A, P38 Alpha Kinase Complexed With A Pyrazolo-Triazine Based
Inhibitor
Length = 366
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 256 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 307
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 308 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 345
>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
pdb|3MPA|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif
Mutants In Response To Inhibitor Binding
Length = 360
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydroquinolinone
pdb|1R3C|A Chain A, The Structure Of P38alpha C162s Mutant
pdb|2I0H|A Chain A, The Structure Of P38alpha In Complex With An
Arylpyridazinone
pdb|3GC7|A Chain A, The Structure Of P38alpha In Complex With A
Dihydroquinazolinone
pdb|3NEW|A Chain A, P38-Alpha Complexed With Compound 10
Length = 366
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 256 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 307
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 308 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 345
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
pdb|1WBO|A Chain A, Fragment Based P38 Inhibitors
pdb|1W7H|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W82|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W83|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1W84|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|1ZZ2|A Chain A, Two Classes Of P38alpha Map Kinase Inhibitors Having A
Common Diphenylether Core But Exhibiting Divergent
Binding Modes
pdb|1WBN|A Chain A, Fragment Based P38 Inhibitors
pdb|1WBS|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBT|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-based Lead Generation.
pdb|1WBV|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1WBW|A Chain A, Identification Of Novel P38 Alpha Map Kinase Inhibitors
Using Fragment-Based Lead Generation.
pdb|1ZYJ|A Chain A, Human P38 Map Kinase In Complex With Inhibitor 1a
pdb|2ZAZ|A Chain A, Crystal Structure Of P38 In Complex With 4-Anilino
Quinoline Inhibitor
pdb|2ZB0|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|2ZB1|A Chain A, Crystal Structure Of P38 In Complex With Biphenyl Amide
Inhibitor
pdb|3HL7|A Chain A, Crystal Structure Of Human P38alpha Complexed With Sd-0006
pdb|3HLL|A Chain A, Crystal Structure Of Human P38alpha Complexed With
Ph-797804
pdb|3HP2|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyridinone Compound
pdb|3HP5|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Pyrimidopyridazinone Compound
pdb|3KF7|A Chain A, Crystal Structure Of Human P38alpha Complexed With A
Triazolopyrimidine Compound
pdb|3MGY|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3ROC|A Chain A, Crystal Structure Of Human P38 Alpha Complexed With A
Pyrimidinone Compound
pdb|3RIN|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|4E5B|A Chain A, Structure Of P38a Map Kinase Without Bog
pdb|4E6A|A Chain A, P38a-Pia23 Complex
pdb|4E6C|A Chain A, P38a-perifosine Complex
pdb|4E8A|A Chain A, The Crystal Structure Of P38a Map Kinase In Complex With
Pia24
Length = 360
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain
In Complex With A Monocyclic Pyrazolone Inhibitor
Length = 360
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex
With Dp802
Length = 354
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48
pdb|3GCU|B Chain B, Human P38 Map Kinase In Complex With Rl48
pdb|3HV4|A Chain A, Human P38 Map Kinase In Complex With Rl51
pdb|3HV4|B Chain B, Human P38 Map Kinase In Complex With Rl51
pdb|3HV5|A Chain A, Human P38 Map Kinase In Complex With Rl24
pdb|3HV5|B Chain B, Human P38 Map Kinase In Complex With Rl24
pdb|3HV6|A Chain A, Human P38 Map Kinase In Complex With Rl39
pdb|3HV7|A Chain A, Human P38 Map Kinase In Complex With Rl38
pdb|3HUC|A Chain A, Human P38 Map Kinase In Complex With Rl40
pdb|3LFA|A Chain A, Human P38 Map Kinase In Complex With Dasatinib
pdb|3QUE|A Chain A, Human P38 Map Kinase In Complex With Skepinone-L
pdb|3QUD|A Chain A, Human P38 Map Kinase In Complex With
2-Amino-Phenylamino-Benzophenone
pdb|3UVP|A Chain A, Human P38 Map Kinase In Complex With A Benzamide
Substituted Benzosuberone
pdb|3UVQ|A Chain A, Human P38 Map Kinase In Complex With A Dibenzosuberone
Derivative
pdb|4EH2|A Chain A, Human P38 Map Kinase In Complex With Np-F1 And Rl87
pdb|4EH3|A Chain A, Human P38 Map Kinase In Complex With Np-F2 And Rl87
pdb|4EH4|A Chain A, Human P38 Map Kinase In Complex With Np-F3 And Rl87
pdb|4EH5|A Chain A, Human P38 Map Kinase In Complex With Np-F4 And Rl87
pdb|4EH6|A Chain A, Human P38 Map Kinase In Complex With Np-F5 And Rl87
pdb|4EH7|A Chain A, Human P38 Map Kinase In Complex With Np-F6 And Rl87
pdb|4EH8|A Chain A, Human P38 Map Kinase In Complex With Np-F7 And Rl87
pdb|4EH9|A Chain A, Human P38 Map Kinase In Complex With Np-F11 And Rl87
pdb|4EHV|A Chain A, Human P38 Map Kinase In Complex With Np-F10 And Rl87
pdb|3UVR|A Chain A, Human P38 Map Kinase In Complex With Km064
pdb|4DLI|A Chain A, Human P38 Map Kinase In Complex With Rl87
pdb|4DLJ|A Chain A, Human P38 Map Kinase In Complex With Rl163
Length = 360
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a)
Activating Mutant
Length = 367
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 257 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 308
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 309 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 346
>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea
pdb|2BAK|A Chain A, P38alpha Map Kinase Bound To Mpaq
pdb|4A9Y|A Chain A, P38alpha Map Kinase Bound To Cmpd 8
pdb|4AA0|A Chain A, P38alpha Map Kinase Bound To Cmpd 2
pdb|4AA4|A Chain A, P38alpha Map Kinase Bound To Cmpd 22
pdb|4AAC|A Chain A, P38alpha Map Kinase Bound To Cmpd 29
Length = 365
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 255 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 306
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 307 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 344
>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A
Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE
COMPLEX IN Solution
Length = 359
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 255 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 306
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 307 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 344
>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
Length = 349
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 247 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 298
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 299 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 336
>pdb|3HEC|A Chain A, P38 In Complex With Imatinib
pdb|3HEG|A Chain A, P38 In Complex With Sorafenib
Length = 348
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 246 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 297
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 298 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 335
>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|3MW1|A Chain A, P38 Kinase Crystal Structure In Complex With Small
Molecule Inhibitor
pdb|2YIS|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase.
pdb|2YIW|A Chain A, Triazolopyridine Inhibitors Of P38 Kinase
Length = 359
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 249 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 300
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 301 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 338
>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase
Length = 367
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 257 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 308
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 309 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 346
>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine
pdb|2YIX|A Chain A, Triazolopyridine Inhibitors Of P38
Length = 351
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 247 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 298
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 299 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 336
>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl
Amide Inhibitor
pdb|3IPH|A Chain A, Crystal Structure Of P38 In Complex With A Biphenylamide
Inhibitor
Length = 360
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based
Inhibitor
Length = 383
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 273 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 324
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 325 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 362
>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of
Phe169 In Function And Structural Dynamics And Reveals A
Novel Dfg-Out State
pdb|3OBJ|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Mutants In
Response To Inhibitor Binding
Length = 360
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A
Dihydroquinazolinone Inhibitor
pdb|1OUK|A Chain A, The Structure Of P38 Alpha In Complex With A
Pyridinylimidazole Inhibitor
pdb|1OUY|A Chain A, The Structure Of P38 Alpha In Complex With A
Dihydropyrido- Pyrimidine Inhibitor
pdb|1R39|A Chain A, The Structure Of P38alpha
pdb|1YQJ|A Chain A, Crystal Structure Of P38 Alpha In Complex With A Selective
Pyridazine Inhibitor
pdb|2OKR|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2OKR|D Chain D, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|A Chain A, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|2ONL|B Chain B, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer
pdb|1WFC|A Chain A, Structure Of Apo, Unphosphorylated, P38 Mitogen Activated
Protein Kinase P38 (P38 Map Kinase) The Mammalian
Homologue Of The Yeast Hog1 Protein
pdb|3DS6|A Chain A, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|B Chain B, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|C Chain C, P38 Complex With A Phthalazine Inhibitor
pdb|3DS6|D Chain D, P38 Complex With A Phthalazine Inhibitor
pdb|3FC1|X Chain X, Crystal Structure Of P38 Kinase Bound To
Pyrimido-Pyridazinone Inhibitor
pdb|3GFE|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor
pdb|3ITZ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridazine Inhibitor
pdb|3LHJ|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Pyrazolopyridinone Inhibitor.
pdb|3ZYA|A Chain A, Human P38 Map Kinase In Complex With 2-Amino-Phenylamino-
Dibenzosuberone
pdb|3U8W|A Chain A, Crystal Structure Of P38a Mitogen-Activated Protein Kinase
In Complex With A Triazolopyridazinone Inhibitor
Length = 366
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 256 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 307
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 308 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 345
>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase
Length = 360
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPYDQSFESRDLLIDEWKS 339
>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-A
pdb|2FSM|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s)
Activating Mutant Form-B
Length = 367
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 257 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 308
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 309 ALAHAYFAQYHDPDDEPVADPYDQSSESRDLLIDEWKS 346
>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map
Kinase
Length = 360
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 60 INSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKS 119
I+S + +I S ++ +NF N NP + LL M+ S++R
Sbjct: 250 ISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLL--------EKMLVLDSDKRITAAQ 301
Query: 120 SIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRA 157
++ A F ++H D V + L DEW++
Sbjct: 302 ALAHAYFAQYHDPDDEPVADPFDQSFESRDLLIDEWKS 339
>pdb|3AWI|A Chain A, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|B Chain B, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|C Chain C, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|D Chain D, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|E Chain E, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
pdb|3AWI|F Chain F, Bifunctional Trna Modification Enzyme Mnmc From
Escherichia Coli
Length = 688
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 305 VETIRSKVSFAKEKGLLGYHVFQLSN----DDKWELSSAGMQ 342
E R+ + A+++GL Y+ +QL N DD W L+ AG Q
Sbjct: 429 AELTRNVLELAQQQGLQIYYQYQLQNLSRKDDCWLLNFAGDQ 470
>pdb|3PS9|A Chain A, Crystal Structure Of Mnmc From E. Coli
Length = 676
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 305 VETIRSKVSFAKEKGLLGYHVFQLSN----DDKWELSSAGMQ 342
E R+ + A+++GL Y+ +QL N DD W L+ AG Q
Sbjct: 417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQ 458
>pdb|3KX6|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase
From Babesia Bovis At 2.1a Resolution
pdb|3KX6|B Chain B, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase
From Babesia Bovis At 2.1a Resolution
pdb|3KX6|C Chain C, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase
From Babesia Bovis At 2.1a Resolution
pdb|3KX6|D Chain D, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase
From Babesia Bovis At 2.1a Resolution
Length = 379
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 131 GLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHL 180
GLD L ++C G F +WRA ++ + +K+ S L ++ T+H L
Sbjct: 144 GLD---GLAERCQKYYNAGARFAKWRAVLSIDVKKNKPSNLSILETAHTL 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,541,254
Number of Sequences: 62578
Number of extensions: 428222
Number of successful extensions: 1225
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 141
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)