Query 046015
Match_columns 352
No_of_seqs 163 out of 1550
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02872 GH18_chitolectin_chito 100.0 3.2E-64 6.9E-69 474.1 29.6 313 30-351 1-361 (362)
2 cd02879 GH18_plant_chitinase_c 100.0 1.1E-62 2.4E-67 449.6 29.2 267 28-336 3-298 (299)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 5.6E-62 1.2E-66 462.5 30.2 315 29-352 1-413 (413)
4 cd02878 GH18_zymocin_alpha Zym 100.0 2.7E-59 5.8E-64 435.6 28.8 284 29-331 1-345 (345)
5 KOG2806 Chitinase [Carbohydrat 100.0 6E-59 1.3E-63 442.9 29.1 317 26-346 56-414 (432)
6 smart00636 Glyco_18 Glycosyl h 100.0 1.3E-58 2.8E-63 431.8 30.4 294 29-331 1-334 (334)
7 COG3325 ChiA Chitinase [Carboh 100.0 8.1E-59 1.8E-63 420.4 24.5 316 24-344 34-436 (441)
8 cd06548 GH18_chitinase The GH1 100.0 3.3E-57 7.1E-62 418.9 27.8 261 30-331 1-322 (322)
9 PF00704 Glyco_hydro_18: Glyco 100.0 5.5E-53 1.2E-57 395.6 28.9 298 28-331 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 1.5E-52 3.3E-57 387.3 24.5 276 29-332 4-311 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 3.2E-51 6.9E-56 382.0 30.1 285 25-340 33-348 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 1.3E-49 2.9E-54 367.4 25.7 274 29-332 3-306 (313)
13 cd06549 GH18_trifunctional GH1 100.0 4.6E-46 9.9E-51 340.3 23.6 273 29-333 1-295 (298)
14 cd06545 GH18_3CO4_chitinase Th 100.0 1E-44 2.2E-49 324.5 24.4 231 30-339 1-252 (253)
15 cd00598 GH18_chitinase-like Th 100.0 2.6E-37 5.6E-42 269.7 22.1 203 30-331 1-210 (210)
16 COG3858 Predicted glycosyl hyd 100.0 9.9E-34 2.2E-38 256.6 21.7 223 90-333 160-412 (423)
17 cd06546 GH18_CTS3_chitinase GH 100.0 9.8E-33 2.1E-37 245.9 24.6 191 29-234 1-217 (256)
18 cd06544 GH18_narbonin Narbonin 100.0 5.2E-32 1.1E-36 239.7 20.4 191 38-239 11-221 (253)
19 cd02871 GH18_chitinase_D-like 100.0 9.7E-30 2.1E-34 234.0 24.8 197 28-235 1-248 (312)
20 KOG2091 Predicted member of gl 99.9 3.3E-26 7.1E-31 198.7 15.8 277 28-331 79-384 (392)
21 cd06542 GH18_EndoS-like Endo-b 99.9 5.1E-25 1.1E-29 197.7 19.7 193 28-237 1-208 (255)
22 cd02877 GH18_hevamine_XipI_cla 99.9 6.9E-23 1.5E-27 184.0 20.5 190 30-235 3-229 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 99.9 4.4E-21 9.6E-26 173.6 20.2 150 47-210 23-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.8 3.4E-18 7.3E-23 144.8 15.7 201 23-234 21-266 (332)
25 KOG4701 Chitinase [Cell wall/m 99.5 2.7E-12 5.9E-17 115.0 18.8 196 24-235 23-257 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.4 1.3E-06 2.8E-11 81.0 9.1 147 80-239 51-215 (339)
27 PF02638 DUF187: Glycosyl hydr 98.0 4.8E-05 1E-09 70.1 11.0 124 109-237 135-299 (311)
28 PF11340 DUF3142: Protein of u 97.9 0.00014 3E-09 60.3 9.8 112 110-236 23-138 (181)
29 PF03644 Glyco_hydro_85: Glyco 97.7 0.00015 3.2E-09 66.7 8.5 146 80-238 47-209 (311)
30 PF13200 DUF4015: Putative gly 97.4 0.032 7E-07 51.2 19.4 87 115-208 124-229 (316)
31 KOG2331 Predicted glycosylhydr 95.4 0.23 5.1E-06 46.5 11.3 146 82-238 118-274 (526)
32 PF14871 GHL6: Hypothetical gl 93.3 0.33 7.2E-06 38.7 6.5 61 74-136 43-132 (132)
33 PF14883 GHL13: Hypothetical g 91.6 9.5 0.00021 34.4 14.1 182 49-240 30-266 (294)
34 COG3867 Arabinogalactan endo-1 90.4 13 0.00029 33.6 15.9 135 73-216 102-261 (403)
35 PRK12568 glycogen branching en 89.7 4.1 8.9E-05 42.0 11.4 88 73-162 317-452 (730)
36 COG1649 Uncharacterized protei 89.6 0.94 2E-05 43.2 6.4 121 110-237 181-344 (418)
37 COG1306 Uncharacterized conser 88.9 1.3 2.9E-05 39.8 6.4 84 115-208 196-299 (400)
38 cd02810 DHOD_DHPD_FMN Dihydroo 88.7 6 0.00013 35.9 11.0 75 73-159 81-161 (289)
39 cd02930 DCR_FMN 2,4-dienoyl-Co 88.0 17 0.00036 34.2 13.8 118 74-203 76-244 (353)
40 PRK12313 glycogen branching en 87.9 5.9 0.00013 40.5 11.3 87 73-162 218-352 (633)
41 TIGR02104 pulA_typeI pullulana 87.7 5.9 0.00013 40.2 11.2 79 75-162 229-339 (605)
42 cd04734 OYE_like_3_FMN Old yel 86.5 23 0.00051 33.1 13.7 118 74-203 76-249 (343)
43 PRK14706 glycogen branching en 86.4 9.5 0.00021 38.9 11.7 88 73-162 215-348 (639)
44 PRK05402 glycogen branching en 86.3 8.6 0.00019 40.0 11.6 88 73-162 313-448 (726)
45 cd04735 OYE_like_4_FMN Old yel 85.8 30 0.00066 32.5 14.1 129 70-206 73-258 (353)
46 TIGR01370 cysRS possible cyste 85.7 6.9 0.00015 36.1 9.4 52 110-162 143-203 (315)
47 TIGR02402 trehalose_TreZ malto 85.0 8.7 0.00019 38.4 10.5 85 73-162 158-268 (542)
48 TIGR01515 branching_enzym alph 84.0 15 0.00033 37.3 12.0 88 73-162 204-339 (613)
49 PLN02960 alpha-amylase 83.5 15 0.00032 38.6 11.5 87 73-162 464-601 (897)
50 COG4724 Endo-beta-N-acetylgluc 83.4 3.1 6.8E-05 38.9 6.0 79 80-160 132-220 (553)
51 PRK14705 glycogen branching en 83.2 17 0.00037 39.9 12.3 88 73-162 813-948 (1224)
52 PF13199 Glyco_hydro_66: Glyco 79.5 6.1 0.00013 39.4 7.0 54 108-161 238-301 (559)
53 cd02803 OYE_like_FMN_family Ol 78.8 13 0.00029 34.3 8.8 46 50-97 47-97 (327)
54 cd04733 OYE_like_2_FMN Old yel 77.9 11 0.00024 35.1 8.1 120 73-204 80-257 (338)
55 cd02932 OYE_YqiM_FMN Old yello 77.8 15 0.00033 34.2 8.9 47 49-97 46-97 (336)
56 PLN02411 12-oxophytodienoate r 77.0 7.9 0.00017 37.0 6.8 23 73-97 85-107 (391)
57 cd02929 TMADH_HD_FMN Trimethyl 76.8 13 0.00028 35.2 8.2 143 50-203 52-258 (370)
58 PRK10785 maltodextrin glucosid 76.6 30 0.00065 35.1 11.2 88 73-162 224-363 (598)
59 COG1902 NemA NADH:flavin oxido 76.2 7.7 0.00017 36.6 6.4 122 74-206 82-261 (363)
60 PF07172 GRP: Glycine rich pro 75.7 1.6 3.4E-05 32.6 1.3 12 1-12 1-12 (95)
61 cd02931 ER_like_FMN Enoate red 75.4 18 0.00038 34.5 8.7 60 74-136 82-171 (382)
62 TIGR02102 pullulan_Gpos pullul 74.9 29 0.00062 37.8 10.9 61 75-137 555-644 (1111)
63 cd02801 DUS_like_FMN Dihydrour 74.8 20 0.00043 31.1 8.4 64 85-160 49-123 (231)
64 PRK07259 dihydroorotate dehydr 73.6 39 0.00085 30.8 10.3 58 90-159 91-156 (301)
65 cd04747 OYE_like_5_FMN Old yel 73.4 22 0.00048 33.6 8.7 63 73-138 76-167 (361)
66 PRK10550 tRNA-dihydrouridine s 73.0 18 0.0004 33.4 7.9 94 90-203 62-168 (312)
67 PLN03244 alpha-amylase; Provis 72.5 50 0.0011 34.5 11.3 61 73-135 439-531 (872)
68 PRK10605 N-ethylmaleimide redu 71.0 28 0.0006 32.9 8.8 22 74-97 78-99 (362)
69 cd04740 DHOD_1B_like Dihydroor 70.8 55 0.0012 29.8 10.6 59 89-159 88-153 (296)
70 PF00724 Oxidored_FMN: NADH:fl 69.3 20 0.00043 33.5 7.5 122 49-181 49-227 (341)
71 TIGR02103 pullul_strch alpha-1 68.5 17 0.00036 38.6 7.3 79 75-162 404-516 (898)
72 PRK03705 glycogen debranching 68.1 19 0.00042 36.9 7.6 61 75-137 242-338 (658)
73 PF07364 DUF1485: Protein of u 67.9 62 0.0013 29.6 10.1 142 76-236 46-198 (292)
74 PLN02877 alpha-amylase/limit d 67.7 40 0.00088 36.1 9.8 63 76-140 467-564 (970)
75 cd06589 GH31 The enzymes of gl 67.6 25 0.00054 31.5 7.5 53 75-140 66-118 (265)
76 PF10566 Glyco_hydro_97: Glyco 67.5 43 0.00093 30.3 8.8 75 74-161 72-148 (273)
77 TIGR02100 glgX_debranch glycog 67.3 22 0.00047 36.8 7.8 82 74-157 244-365 (688)
78 PRK14582 pgaB outer membrane N 67.0 30 0.00065 35.5 8.6 86 147-240 513-614 (671)
79 TIGR00737 nifR3_yhdG putative 67.0 53 0.0011 30.3 9.7 44 85-140 57-100 (319)
80 TIGR03849 arch_ComA phosphosul 66.6 27 0.00059 30.8 7.1 136 75-234 41-194 (237)
81 PLN02495 oxidoreductase, actin 66.0 51 0.0011 31.4 9.4 56 74-141 97-153 (385)
82 PRK13523 NADPH dehydrogenase N 65.8 37 0.00079 31.8 8.4 86 49-137 50-164 (337)
83 PF14587 Glyco_hydr_30_2: O-Gl 64.3 41 0.00088 31.9 8.3 86 75-163 104-217 (384)
84 cd02940 DHPD_FMN Dihydropyrimi 64.3 73 0.0016 29.1 10.0 72 77-159 86-167 (299)
85 PF14885 GHL15: Hypothetical g 64.2 11 0.00023 27.1 3.5 36 102-137 40-76 (79)
86 PF02057 Glyco_hydro_59: Glyco 63.9 25 0.00054 35.8 7.1 77 79-163 116-201 (669)
87 cd04741 DHOD_1A_like Dihydroor 63.1 1E+02 0.0022 28.1 10.7 79 69-159 68-156 (294)
88 PRK08318 dihydropyrimidine deh 62.3 82 0.0018 30.3 10.4 67 82-159 91-167 (420)
89 PRK14581 hmsF outer membrane N 62.2 1.7E+02 0.0037 30.2 12.8 184 48-240 346-614 (672)
90 PRK07565 dihydroorotate dehydr 62.1 62 0.0013 30.1 9.3 77 70-159 82-164 (334)
91 PRK02506 dihydroorotate dehydr 61.9 73 0.0016 29.3 9.6 80 69-160 71-157 (310)
92 cd06591 GH31_xylosidase_XylS X 60.4 51 0.0011 30.5 8.3 71 66-139 57-160 (319)
93 COG1891 Uncharacterized protei 60.3 32 0.00068 28.7 5.9 180 109-332 6-193 (235)
94 PF04914 DltD_C: DltD C-termin 57.4 54 0.0012 26.0 6.8 58 75-134 36-95 (130)
95 PF02065 Melibiase: Melibiase; 56.9 31 0.00066 33.0 6.3 110 74-200 103-251 (394)
96 PF02684 LpxB: Lipid-A-disacch 53.1 1.2E+02 0.0026 28.8 9.5 112 74-203 11-140 (373)
97 PF01120 Alpha_L_fucos: Alpha- 52.8 1.6E+02 0.0035 27.5 10.4 85 73-160 136-237 (346)
98 PRK08255 salicylyl-CoA 5-hydro 52.2 77 0.0017 33.3 8.9 24 113-137 550-573 (765)
99 TIGR01037 pyrD_sub1_fam dihydr 52.1 1.9E+02 0.004 26.3 10.9 89 90-203 90-189 (300)
100 TIGR00742 yjbN tRNA dihydrouri 51.8 78 0.0017 29.3 7.9 64 85-160 49-123 (318)
101 cd02933 OYE_like_FMN Old yello 51.6 1.2E+02 0.0025 28.4 9.1 22 74-97 76-97 (338)
102 COG3623 SgaU Putative L-xylulo 51.3 1.3E+02 0.0029 26.5 8.5 87 70-162 49-144 (287)
103 cd04739 DHOD_like Dihydroorota 51.2 1.3E+02 0.0029 27.8 9.5 58 90-159 99-162 (325)
104 PRK11815 tRNA-dihydrouridine s 50.8 55 0.0012 30.5 6.8 63 85-159 59-132 (333)
105 PF05984 Cytomega_UL20A: Cytom 50.0 16 0.00035 26.1 2.3 27 1-28 1-27 (100)
106 COG0296 GlgB 1,4-alpha-glucan 49.3 64 0.0014 32.8 7.3 62 73-136 212-304 (628)
107 PRK03995 hypothetical protein; 48.8 48 0.001 29.8 5.8 66 89-155 179-260 (267)
108 PRK01060 endonuclease IV; Prov 47.9 42 0.00091 30.1 5.5 46 117-162 14-59 (281)
109 PF02055 Glyco_hydro_30: O-Gly 46.8 1E+02 0.0022 30.6 8.2 128 77-206 155-312 (496)
110 PF06415 iPGM_N: BPG-independe 46.1 1.6E+02 0.0034 25.8 8.4 78 75-162 14-93 (223)
111 PLN02447 1,4-alpha-glucan-bran 45.7 73 0.0016 33.3 7.3 61 73-135 298-390 (758)
112 cd06602 GH31_MGAM_SI_GAA This 45.6 1.1E+02 0.0024 28.6 8.0 34 107-140 134-167 (339)
113 PF08885 GSCFA: GSCFA family; 43.1 72 0.0016 28.4 6.0 52 75-126 152-209 (251)
114 smart00812 Alpha_L_fucos Alpha 43.0 1.4E+02 0.0029 28.6 8.3 82 73-157 126-221 (384)
115 PRK09936 hypothetical protein; 42.1 2.7E+02 0.0059 25.4 13.4 121 33-160 25-170 (296)
116 PRK05286 dihydroorotate dehydr 41.6 2.3E+02 0.005 26.5 9.5 66 89-160 136-206 (344)
117 PRK14866 hypothetical protein; 41.0 58 0.0013 31.7 5.4 65 89-155 183-263 (451)
118 cd06600 GH31_MGAM-like This fa 40.4 1.4E+02 0.003 27.6 7.8 33 108-140 130-162 (317)
119 PF00834 Ribul_P_3_epim: Ribul 40.3 1.4E+02 0.003 25.6 7.2 64 123-207 75-138 (201)
120 cd04738 DHOD_2_like Dihydrooro 37.9 2E+02 0.0044 26.6 8.5 66 89-160 127-197 (327)
121 COG1908 FrhD Coenzyme F420-red 36.8 79 0.0017 24.6 4.5 46 117-163 80-125 (132)
122 COG1453 Predicted oxidoreducta 36.7 1.4E+02 0.0031 28.2 7.0 28 113-140 32-59 (391)
123 COG3410 Uncharacterized conser 36.6 80 0.0017 26.1 4.7 43 109-154 146-188 (191)
124 COG0763 LpxB Lipid A disacchar 36.5 1.9E+02 0.0042 27.4 7.9 110 76-203 16-143 (381)
125 PF14488 DUF4434: Domain of un 35.4 2.6E+02 0.0055 23.1 12.3 108 48-162 32-151 (166)
126 PF08869 XisI: XisI protein; 34.9 22 0.00048 27.3 1.3 16 217-232 82-97 (111)
127 cd00019 AP2Ec AP endonuclease 34.9 93 0.002 27.8 5.7 45 118-162 13-57 (279)
128 PF01207 Dus: Dihydrouridine s 34.4 1.6E+02 0.0034 27.1 7.1 65 84-160 47-122 (309)
129 PF07582 AP_endonuc_2_N: AP en 34.3 95 0.0021 20.5 4.0 41 118-159 3-44 (55)
130 COG1080 PtsA Phosphoenolpyruva 34.1 3.6E+02 0.0079 27.1 9.7 91 111-207 366-457 (574)
131 KOG0134 NADH:flavin oxidoreduc 32.5 1.3E+02 0.0028 28.7 6.1 21 116-136 175-195 (400)
132 PF08194 DIM: DIM protein; In 32.5 58 0.0013 19.5 2.5 6 26-31 23-28 (36)
133 KOG1643 Triosephosphate isomer 32.5 2.3E+02 0.005 24.4 7.0 46 89-137 118-164 (247)
134 PF04468 PSP1: PSP1 C-terminal 31.7 1.5E+02 0.0032 21.6 5.2 50 111-160 22-80 (88)
135 PF07745 Glyco_hydro_53: Glyco 31.4 3.3E+02 0.0072 25.4 8.6 85 73-162 56-166 (332)
136 PF10731 Anophelin: Thrombin i 30.9 45 0.00097 22.3 2.0 17 1-17 1-17 (65)
137 PRK09441 cytoplasmic alpha-amy 30.8 1.2E+02 0.0027 29.7 6.2 29 109-137 207-235 (479)
138 TIGR01769 GGGP geranylgeranylg 30.8 2.2E+02 0.0049 24.5 6.9 72 109-205 6-78 (205)
139 PRK14510 putative bifunctional 30.8 3.1E+02 0.0066 30.7 9.5 83 73-162 245-365 (1221)
140 COG3317 NlpB Uncharacterized l 30.3 2.6E+02 0.0056 26.1 7.4 55 66-133 74-128 (342)
141 COG0050 TufB GTPases - transla 30.2 2E+02 0.0044 26.5 6.6 58 104-161 138-198 (394)
142 COG4333 Uncharacterized protei 29.9 47 0.001 26.6 2.4 47 280-326 28-76 (167)
143 TIGR02456 treS_nterm trehalose 29.5 2E+02 0.0043 28.8 7.4 53 109-162 172-230 (539)
144 TIGR01036 pyrD_sub2 dihydrooro 29.0 4.8E+02 0.01 24.3 9.6 79 77-161 121-204 (335)
145 cd06599 GH31_glycosidase_Aec37 29.0 2.3E+02 0.005 26.1 7.3 61 76-139 74-169 (317)
146 cd06595 GH31_xylosidase_XylS-l 29.0 2.8E+02 0.006 25.2 7.7 71 67-139 66-160 (292)
147 PRK09505 malS alpha-amylase; R 28.9 70 0.0015 33.1 4.1 29 109-137 435-463 (683)
148 PLN02711 Probable galactinol-- 28.8 2.7E+02 0.0059 29.0 8.0 55 108-162 378-434 (777)
149 PF05691 Raffinose_syn: Raffin 28.7 2.2E+02 0.0047 29.7 7.4 88 74-161 287-416 (747)
150 COG1523 PulA Type II secretory 28.2 2.1E+02 0.0045 29.7 7.2 63 75-139 265-363 (697)
151 COG2342 Predicted extracellula 28.1 3.7E+02 0.008 24.4 7.9 48 115-162 126-183 (300)
152 KOG3035 Isoamyl acetate-hydrol 28.0 3.9E+02 0.0084 23.4 7.7 61 74-134 99-171 (245)
153 TIGR01839 PHA_synth_II poly(R) 28.0 1.2E+02 0.0027 30.4 5.4 46 118-163 237-282 (560)
154 PF07476 MAAL_C: Methylasparta 27.9 3E+02 0.0066 24.1 7.0 106 89-209 66-174 (248)
155 PRK14582 pgaB outer membrane N 27.6 5.7E+02 0.012 26.5 10.2 44 300-343 324-371 (671)
156 smart00633 Glyco_10 Glycosyl h 27.5 4.3E+02 0.0093 23.3 9.5 75 76-156 104-179 (254)
157 cd06598 GH31_transferase_CtsZ 27.2 2.5E+02 0.0054 25.8 7.2 30 109-139 136-165 (317)
158 PF01702 TGT: Queuine tRNA-rib 27.1 2.4E+02 0.0053 24.6 6.8 62 88-162 52-113 (238)
159 PF14307 Glyco_tran_WbsX: Glyc 26.9 1.6E+02 0.0035 27.5 5.9 42 303-345 55-96 (345)
160 TIGR03234 OH-pyruv-isom hydrox 26.5 1.1E+02 0.0025 26.8 4.7 20 117-136 16-35 (254)
161 COG0162 TyrS Tyrosyl-tRNA synt 26.1 3.5E+02 0.0076 26.0 7.9 96 57-159 36-140 (401)
162 cd07321 Extradiol_Dioxygenase_ 25.9 76 0.0016 22.6 2.7 28 103-130 9-36 (77)
163 PRK01021 lpxB lipid-A-disaccha 25.9 5.1E+02 0.011 26.4 9.3 109 77-203 242-368 (608)
164 PF00128 Alpha-amylase: Alpha 25.6 1.2E+02 0.0027 27.0 4.8 46 109-162 143-188 (316)
165 PF04414 tRNA_deacylase: D-ami 25.3 2.8E+02 0.0062 24.0 6.6 63 92-155 131-207 (213)
166 COG1127 Ttg2A ABC-type transpo 25.3 4.2E+02 0.0092 23.7 7.6 43 142-204 178-220 (263)
167 PF01630 Glyco_hydro_56: Hyalu 24.5 3.9E+02 0.0085 25.0 7.7 50 297-346 273-323 (337)
168 PF14606 Lipase_GDSL_3: GDSL-l 24.3 3.9E+02 0.0085 22.4 7.1 62 73-134 76-141 (178)
169 COG3693 XynA Beta-1,4-xylanase 23.9 6E+02 0.013 23.7 8.9 72 82-160 178-252 (345)
170 COG2874 FlaH Predicted ATPases 23.6 3.8E+02 0.0083 23.5 6.9 69 104-180 99-168 (235)
171 PF05219 DREV: DREV methyltran 23.4 4.6E+02 0.01 23.6 7.7 99 74-183 75-196 (265)
172 smart00518 AP2Ec AP endonuclea 23.4 1.9E+02 0.0042 25.6 5.6 44 119-162 14-57 (273)
173 smart00733 Mterf Mitochondrial 23.1 78 0.0017 16.8 2.0 20 300-320 11-30 (31)
174 PF02896 PEP-utilizers_C: PEP- 22.8 2.2E+02 0.0049 26.0 5.8 87 113-207 119-208 (293)
175 PRK00865 glutamate racemase; P 22.7 4.6E+02 0.0099 23.3 7.8 55 82-137 22-76 (261)
176 PRK09989 hypothetical protein; 22.7 1.9E+02 0.004 25.5 5.3 35 118-162 18-52 (258)
177 KOG3111 D-ribulose-5-phosphate 22.6 4.3E+02 0.0094 22.6 6.9 63 123-206 82-144 (224)
178 cd01841 NnaC_like NnaC (CMP-Ne 22.6 4.1E+02 0.0089 21.3 7.2 62 74-135 74-137 (174)
179 cd01827 sialate_O-acetylestera 22.5 4.3E+02 0.0093 21.5 7.3 60 75-134 93-154 (188)
180 PRK13840 sucrose phosphorylase 22.3 2.7E+02 0.0058 27.6 6.6 54 108-162 167-226 (495)
181 COG5185 HEC1 Protein involved 21.5 85 0.0018 30.4 2.8 55 104-160 97-151 (622)
182 COG1646 Predicted phosphate-bi 21.1 2.8E+02 0.0061 24.4 5.7 72 109-205 23-95 (240)
183 cd00405 PRAI Phosphoribosylant 21.1 2.8E+02 0.006 23.5 5.9 35 117-160 62-96 (203)
184 PF12891 Glyco_hydro_44: Glyco 21.0 3.1E+02 0.0067 24.3 6.0 60 78-137 160-235 (239)
185 TIGR00736 nifR3_rel_arch TIM-b 21.0 5.7E+02 0.012 22.4 8.2 88 90-202 67-167 (231)
186 PF12876 Cellulase-like: Sugar 20.8 2E+02 0.0043 20.7 4.2 72 124-205 2-88 (88)
187 COG0429 Predicted hydrolase of 20.8 2E+02 0.0044 26.8 5.0 50 111-160 87-146 (345)
188 cd06568 GH20_SpHex_like A subg 20.7 6.8E+02 0.015 23.2 9.7 87 73-164 73-189 (329)
189 PRK05434 phosphoglyceromutase; 20.6 6.8E+02 0.015 24.9 9.0 79 74-162 95-175 (507)
190 PF05763 DUF835: Protein of un 20.5 2.5E+02 0.0055 22.3 5.1 53 109-161 56-109 (136)
191 cd02190 epsilon_tubulin The tu 20.3 7.2E+02 0.016 23.6 9.0 88 110-206 79-173 (379)
192 PRK12677 xylose isomerase; Pro 20.2 3.4E+02 0.0073 25.9 6.7 46 117-162 33-79 (384)
No 1
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=3.2e-64 Score=474.08 Aligned_cols=313 Identities=29% Similarity=0.466 Sum_probs=272.5
Q ss_pred EEEEecCC-------CCCCCCCCCCCCccEEEEeeEEEeCCCceEeeCCC---ChHHHHHHHHHHHhcCCCcEEEEEEeC
Q 046015 30 RGGYWHAH-------SELPIAEIHSALFSNLMCAFAFINSSTYNIFINST---SEQFFVNFTNTVKHRNPSVITLLSVWG 99 (352)
Q Consensus 30 v~~y~~~~-------~~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~lk~~~~~~kvllsiGg 99 (352)
|+|||+.+ ..+.++++|.++||||+|+|+.++++|........ ....+..+. .+|+++|++||++||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~~~~d~~~~~~~~~~-~lk~~~p~lkvlisiGG 79 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDEWNDIDLGLYERFN-ALKEKNPNLKTLLAIGG 79 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecCchhhhhhhHHHHHH-HHHhhCCCceEEEEEcC
Confidence 57899883 25789999999999999999999998644433322 345566675 68999999999999999
Q ss_pred Cc----cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC----CcchhHHHHHHHHHHHHHhhhhhhcCCcee
Q 046015 100 GA----IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK----CTNMTKLGTLFDEWRAEVTSESRKSGKSQL 171 (352)
Q Consensus 100 ~~----~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~----~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~ 171 (352)
|. .|+.+++|++.|++|++++++++++|+|||||||||+|.. ++++++|+.||++||++|++.+ +++
T Consensus 80 ~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr~~l~~~~-----~~~ 154 (362)
T cd02872 80 WNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELREAFEPEA-----PRL 154 (362)
T ss_pred CCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHHHHHHhhC-----cCe
Confidence 86 6999999999999999999999999999999999999974 4789999999999999998763 358
Q ss_pred EEEEEecCCccccccCCChhhhhccCcEEEeeccccCCCCCCchh-------------------------HHhHcCCCCc
Q 046015 172 LLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNFT-------------------------EWLKRGFQAK 226 (352)
Q Consensus 172 ~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~-------------------------~~~~~g~p~~ 226 (352)
+||+++|+.+......||+++|.+++|+|+||+||++++|....+ .|++.|+|++
T Consensus 155 ~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~ 234 (362)
T cd02872 155 LLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPPE 234 (362)
T ss_pred EEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCHH
Confidence 999999987766555699999999999999999999998742111 5677899999
Q ss_pred ceeeecccceeeeeecCCCCCCCCCCCCCCC-----CCCCccccHHHHHhhhhcCCCceeEEEeccceeEEEEeCCEEEE
Q 046015 227 KLVLGLPYHGYAWTLVNPDENPVGSPATGPA-----ITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVN 301 (352)
Q Consensus 227 Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ 301 (352)
||+||+|+||+.|++.+..++++|+|..|++ ....|.++|.|||+.+ ..+ ++..||+.+.++|.+.+++||+
T Consensus 235 KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~--~~~~~D~~~~~~y~~~~~~~v~ 311 (362)
T cd02872 235 KLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSG--WTVVWDDEQKVPYAYKGNQWVG 311 (362)
T ss_pred HeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCC--cEEEEeCCcceeEEEECCEEEE
Confidence 9999999999999998877788888877654 2367899999999988 667 8999999999999999999999
Q ss_pred eCcHHHHHHHHHHHHhcCCceEEEEeccCCCChhhHHHHHHHhhhhhccC
Q 046015 302 FDGVETIRSKVSFAKEKGLLGYHVFQLSNDDKWELSSAGMQLLITYQSKK 351 (352)
Q Consensus 302 ydd~~S~~~K~~~~~~~~l~Gi~~W~l~~Dd~~~l~~a~~~~l~~~~~~~ 351 (352)
|||++|++.|++|++++||||+++|+|++||+.+.|+.+++||+++..+.
T Consensus 312 ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~cg~~~~pLl~~i~~~ 361 (362)
T cd02872 312 YDDEESIALKVQYLKSKGLGGAMVWSIDLDDFRGTCGQGKYPLLNAINRA 361 (362)
T ss_pred eCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCccCCCCCcHHHHHHHh
Confidence 99999999999999999999999999999999999998899999887653
No 2
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=1.1e-62 Score=449.61 Aligned_cols=267 Identities=47% Similarity=0.841 Sum_probs=241.0
Q ss_pred cEEEEEecCCC-CCCCCCCCCCCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCc----c
Q 046015 28 WIRGGYWHAHS-ELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGA----I 102 (352)
Q Consensus 28 ~~v~~y~~~~~-~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~----~ 102 (352)
-+++|||+.+. .+.++++++++||||+|+|+.++++++.+...+.++..+..+.+.+|+++|++|+|+|||||. .
T Consensus 3 ~~~~~Y~~~w~~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~~s~~ 82 (299)
T cd02879 3 IVKGGYWPAWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGSDSSA 82 (299)
T ss_pred eEEEEEECCCCCCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCch
Confidence 47899999966 899999999999999999999999887888777667778888888999999999999999986 6
Q ss_pred chhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCcc
Q 046015 103 FSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPA 182 (352)
Q Consensus 103 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~ 182 (352)
|+.++++++.|++|++++++++++|+|||||||||+|..++++++|+.||++||++|++..+++++.+++||+++|+.+.
T Consensus 83 fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~~~~~~~~~ls~av~~~~~ 162 (299)
T cd02879 83 FAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAAVYFSPI 162 (299)
T ss_pred hhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhhccCCCcEEEEeecccchh
Confidence 99999999999999999999999999999999999998778999999999999999998777777778999999987665
Q ss_pred c----cccCCChhhhhccCcEEEeeccccCCCCCCchh--------------------HHhHcCCCCcceeeecccceee
Q 046015 183 L----ESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNFT--------------------EWLKRGFQAKKLVLGLPYHGYA 238 (352)
Q Consensus 183 ~----~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~--------------------~~~~~g~p~~Kivlglp~yG~~ 238 (352)
. ....||+++|.++||||+||+||++|+|....+ .|++.|+|++||+||+|+|||.
T Consensus 163 ~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~~~~~~~~~v~~~~~~g~p~~KlvlGvp~YGr~ 242 (299)
T cd02879 163 LFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSNVSTDYGIKSWIKAGVPAKKLVLGLPLYGRA 242 (299)
T ss_pred hccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCCCCCCHHHHHHHHHHcCCCHHHEEEEecccccc
Confidence 4 344589999999999999999999998874211 6788999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCCCCCCccccHHHHHhhhhcCCCceeEEEeccceeEEEEeCCEEEEeCcHHHHHHHHHHHHhc
Q 046015 239 WTLVNPDENPVGSPATGPAITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEK 318 (352)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~~~ 318 (352)
|++ ||+.+.++|.+.+++||+|||++|++.|++||+++
T Consensus 243 ~~~------------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~~a~~~ 280 (299)
T cd02879 243 WTL------------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVKYAKQK 280 (299)
T ss_pred ccc------------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHHHHHhC
Confidence 952 67777889999899999999999999999999999
Q ss_pred CCceEEEEeccCCCChhh
Q 046015 319 GLLGYHVFQLSNDDKWEL 336 (352)
Q Consensus 319 ~l~Gi~~W~l~~Dd~~~l 336 (352)
||||+|+|++++||++.|
T Consensus 281 ~lgGv~~W~l~~Dd~~~~ 298 (299)
T cd02879 281 GLLGYFAWAVGYDDNNWL 298 (299)
T ss_pred CCCeEEEEEeecCCcccc
Confidence 999999999999997765
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=5.6e-62 Score=462.50 Aligned_cols=315 Identities=23% Similarity=0.395 Sum_probs=256.6
Q ss_pred EEEEEecCC-------CCCCCCCCCCCC--ccEEEEeeEEEeCCCceEeeCCCC----hHHHHHHHHHHHhcCCCcEEEE
Q 046015 29 IRGGYWHAH-------SELPIAEIHSAL--FSNLMCAFAFINSSTYNIFINSTS----EQFFVNFTNTVKHRNPSVITLL 95 (352)
Q Consensus 29 ~v~~y~~~~-------~~~~~~~~~~~~--~Thi~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~lk~~~~~~kvll 95 (352)
+|+|||..+ ..+.+++|+..+ ||||+|+|+.++++++.+...++. ...+.++. .+|++||++|||+
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~lk~~~p~lKvll 79 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAIT-SLKRKYPHLKVLL 79 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHH-HHHhhCCCCeEEE
Confidence 368898882 357899999865 999999999999987777665442 24566765 6999999999999
Q ss_pred EEeCCc---------cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC-------------------------
Q 046015 96 SVWGGA---------IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK------------------------- 141 (352)
Q Consensus 96 siGg~~---------~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~------------------------- 141 (352)
|||||. .|+.++++++.|++||+++++++++|+|||||||||+|..
T Consensus 80 SiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~ 159 (413)
T cd02873 80 SVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSV 159 (413)
T ss_pred eecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhcccccccc
Confidence 999996 3899999999999999999999999999999999999852
Q ss_pred -----CcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCChhhhhccCcEEEeeccccCCCCCCch-
Q 046015 142 -----CTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNF- 215 (352)
Q Consensus 142 -----~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~- 215 (352)
++++++|+.||++||++|++. +++|++++++.... ...||+++|.++|||||||+||+|++|..+.
T Consensus 160 ~~~~~~~d~~nf~~Ll~elr~~l~~~-------~~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~~ 231 (413)
T cd02873 160 VDEKAAEHKEQFTALVRELKNALRPD-------GLLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTPERNPEE 231 (413)
T ss_pred cCCCChhHHHHHHHHHHHHHHHhccc-------CcEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCCCCCCCc
Confidence 357899999999999999865 47889988654222 2248999999999999999999998874321
Q ss_pred -h----------------------HHhHcCCCCcceeeecccceeeeeecCCCC-CC--CCCCCC-----CCCCCCCccc
Q 046015 216 -T----------------------EWLKRGFQAKKLVLGLPYHGYAWTLVNPDE-NP--VGSPAT-----GPAITIDGSV 264 (352)
Q Consensus 216 -~----------------------~~~~~g~p~~Kivlglp~yG~~~~~~~~~~-~~--~~~~~~-----~~~~~~~g~~ 264 (352)
. .|++.|+|++||+||+|+|||.|++..+.. .+ ..++.. |+.+.++|.+
T Consensus 232 ~~~~apL~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~l 311 (413)
T cd02873 232 ADYTAPIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGLL 311 (413)
T ss_pred cCcCCccCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCccc
Confidence 0 578889999999999999999999876532 11 112333 3344578899
Q ss_pred cHHHHHhhhhcCC------CceeEEEeccce-eEEEEe-------CCEEEEeCcHHHHHHHHHHHHhcCCceEEEEeccC
Q 046015 265 GYKFIKGFIRDYG------YGAASVYNHSYV-MNFFSA-------KTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSN 330 (352)
Q Consensus 265 ~y~~i~~~~~~~~------~~~~~~~d~~~~-~~y~~~-------~~~~i~ydd~~S~~~K~~~~~~~~l~Gi~~W~l~~ 330 (352)
+|.|||+.+...+ ..++..||++.. ++|.|. .++||+|||++|++.|++|++++||||+|+|++++
T Consensus 312 ~y~ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~~ 391 (413)
T cd02873 312 SWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSL 391 (413)
T ss_pred cHHHHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeeec
Confidence 9999999876421 015677898775 588882 25799999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHhhhhhccCC
Q 046015 331 DDKWELSSAGMQLLITYQSKKF 352 (352)
Q Consensus 331 Dd~~~l~~a~~~~l~~~~~~~~ 352 (352)
||+.+.|+...+||++....+|
T Consensus 392 DD~~g~c~~~~~pll~~i~~~~ 413 (413)
T cd02873 392 DDFRGQCTGDKFPILRSAKYRL 413 (413)
T ss_pred CcCCCCcCCCCChHHHHHHhhC
Confidence 9999999888899998876543
No 4
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=2.7e-59 Score=435.61 Aligned_cols=284 Identities=18% Similarity=0.281 Sum_probs=239.1
Q ss_pred EEEEEecCC------CCCCCCCCCCCCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCc-
Q 046015 29 IRGGYWHAH------SELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGA- 101 (352)
Q Consensus 29 ~v~~y~~~~------~~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~- 101 (352)
++||||+.+ ..+.+++++.++||||+|+|+.+++++ .+...+ ....+..+. .+ + ++|||+|||||.
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~-~~~~~~~~~-~~--k--~lkvllsiGG~~~ 73 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS-VQEQFSDFK-KL--K--GVKKILSFGGWDF 73 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCC-eEeecc-cHHHHHHHH-hh--c--CcEEEEEEeCCCC
Confidence 478999995 257899999999999999999999875 666653 334444443 22 2 499999999997
Q ss_pred --c------chhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC----------CcchhHHHHHHHHHHHHHhhhh
Q 046015 102 --I------FSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK----------CTNMTKLGTLFDEWRAEVTSES 163 (352)
Q Consensus 102 --~------~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~----------~~~~~~~~~~l~~lr~~l~~~~ 163 (352)
. |+.++ ++++|++|++++++++++|+|||||||||+|.. ++++++|+.||++||++|++
T Consensus 74 s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~-- 150 (345)
T cd02878 74 STSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS-- 150 (345)
T ss_pred CCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc--
Confidence 1 77777 999999999999999999999999999999853 35789999999999999975
Q ss_pred hhcCCceeEEEEEecCCccccccCCChhhhhccCcEEEeeccccCCCCCCch---------------------h-----H
Q 046015 164 RKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNF---------------------T-----E 217 (352)
Q Consensus 164 ~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~---------------------~-----~ 217 (352)
+++||+++|+.+... ..||++++.+++|||+||+||+||+|+... . .
T Consensus 151 ------~~~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~ 223 (345)
T cd02878 151 ------GKSLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTETLDALSM 223 (345)
T ss_pred ------CcEEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCchhHHHHHHH
Confidence 368999998765543 359999999999999999999999886321 0 5
Q ss_pred HhHcCCCCcceeeecccceeeeeecCCCCCCCCCCCCCCCC--------CCCccccHHHHHhhh-hcCCCceeEEEeccc
Q 046015 218 WLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAI--------TIDGSVGYKFIKGFI-RDYGYGAASVYNHSY 288 (352)
Q Consensus 218 ~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~--------~~~g~~~y~~i~~~~-~~~~~~~~~~~d~~~ 288 (352)
|++.|+|++||+||+|+|||.|++.++.++++++|+.|++. +..|.+.+.|+|..+ ...+ ++..||+.+
T Consensus 224 ~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~--~~~~~d~~~ 301 (345)
T cd02878 224 ITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSK--NKRWYDTDS 301 (345)
T ss_pred HHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCC--CcEEEecCC
Confidence 78899999999999999999999999999999999887642 244556679999854 4456 899999999
Q ss_pred eeEEE-EeCCEEEEeCcHHHHHHHHHHHHhcCCceEEEEeccCC
Q 046015 289 VMNFF-SAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSND 331 (352)
Q Consensus 289 ~~~y~-~~~~~~i~ydd~~S~~~K~~~~~~~~l~Gi~~W~l~~D 331 (352)
.++|. +.+++||+|||++|++.|++||+++||||+|+|+|++|
T Consensus 302 ~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 302 DSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 99987 56779999999999999999999999999999999987
No 5
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6e-59 Score=442.85 Aligned_cols=317 Identities=23% Similarity=0.405 Sum_probs=272.0
Q ss_pred CCcEEEEEecCCC-CCCCCCCCCCCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCC-c--
Q 046015 26 PNWIRGGYWHAHS-ELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGG-A-- 101 (352)
Q Consensus 26 ~~~~v~~y~~~~~-~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~-~-- 101 (352)
.....+||+.+.. ...+++++..+|||++|+|+.++.++..+...+.....+..+.+.+|.++|++|+|+||||| .
T Consensus 56 c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~ns 135 (432)
T KOG2806|consen 56 CEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHGNS 135 (432)
T ss_pred ccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCCCc
Confidence 3456799998877 89999999999999999999999998666666655667888888999999999999999999 4
Q ss_pred -cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCC-CCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecC
Q 046015 102 -IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPD-KCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHH 179 (352)
Q Consensus 102 -~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~-~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~ 179 (352)
.|+.+++|++.|+.||+++++++++|+|||||||||+|. .+.++.+|..|++|||++|.++.++..++..+|+.++..
T Consensus 136 ~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~~~~~~~~~~~l~~~v~~ 215 (432)
T KOG2806|consen 136 GLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARETLKSPDTAKVLEAVVAD 215 (432)
T ss_pred cchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHHhhccCCccceeeecccc
Confidence 999999999999999999999999999999999999995 468999999999999999999988877776556665554
Q ss_pred Ccc-ccccCCChhhhhccCcEEEeeccccCCCCCCc--hh-----------------------HHhHcCCCCcceeeecc
Q 046015 180 LPA-LESVSYPLDSMQRNLDWIHVLTFDYYLPTRDN--FT-----------------------EWLKRGFQAKKLVLGLP 233 (352)
Q Consensus 180 ~~~-~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~--~~-----------------------~~~~~g~p~~Kivlglp 233 (352)
++. .....||+.+|.+++||||||+||++|+|..+ ++ +|++.|.||+|++||+|
T Consensus 216 ~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~~~~~~~~~Kl~~gip 295 (432)
T KOG2806|consen 216 SKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYWTEKGLPPSKLVLALP 295 (432)
T ss_pred CccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHHhhcCCCchheEEEEe
Confidence 433 66767999999999999999999999998872 11 78888999999999999
Q ss_pred cceeeeeecCCCCCCCCCCCCCCC------CCCCccccHHHHHhhhhcCCCceeEEEeccceeEEEEe--CCEEEEeCcH
Q 046015 234 YHGYAWTLVNPDENPVGSPATGPA------ITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSA--KTTWVNFDGV 305 (352)
Q Consensus 234 ~yG~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~--~~~~i~ydd~ 305 (352)
+||+.|++.+.+.+ ++.+..+++ ...+|.++|.|||+...+.+ ...||+.++++|+|+ .++||+|||+
T Consensus 296 ~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~---~~~~d~~~~~~Y~~~~~~~~wvtyen~ 371 (432)
T KOG2806|consen 296 FYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG---VTHWDEETQTPYLYNIPYDQWVTYENE 371 (432)
T ss_pred cceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC---CceecCCceeeeEEecCCCeEEecCCH
Confidence 99999999986655 444433332 23678999999999655543 689999999999998 9999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEEeccCCCChh-hHHH-HHHHhhh
Q 046015 306 ETIRSKVSFAKEKGLLGYHVFQLSNDDKWE-LSSA-GMQLLIT 346 (352)
Q Consensus 306 ~S~~~K~~~~~~~~l~Gi~~W~l~~Dd~~~-l~~a-~~~~l~~ 346 (352)
+|++.|++||++++|||+++|++++||+.+ +|++ ..+|++.
T Consensus 372 ~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~~~~~~~~~ 414 (432)
T KOG2806|consen 372 RSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNAALSRPQTC 414 (432)
T ss_pred HHHHHHHHHHHhcCCceEEEEeccCCCCCCcccccccccccee
Confidence 999999999999999999999999999555 5764 5665543
No 6
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=1.3e-58 Score=431.76 Aligned_cols=294 Identities=28% Similarity=0.510 Sum_probs=253.2
Q ss_pred EEEEEecCCC----CCCCCCCCCCCccEEEEeeEEEeCCCceEeeCCCCh--HHHHHHHHHHHhcCCCcEEEEEEeCCc-
Q 046015 29 IRGGYWHAHS----ELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSE--QFFVNFTNTVKHRNPSVITLLSVWGGA- 101 (352)
Q Consensus 29 ~v~~y~~~~~----~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lk~~~~~~kvllsiGg~~- 101 (352)
+++|||+++. .+.+++++.++||||+|+|+.++++| ++.+.++.. ..+..+. .+|+++|++|||++||||.
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~-~l~~~~~~~kvl~svgg~~~ 78 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADIGNFGQLK-ALKKKNPGLKVLLSIGGWTE 78 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhhhhHHHHH-HHHHhCCCCEEEEEEeCCCC
Confidence 3799999965 38899999999999999999999965 666654433 3556665 6889999999999999987
Q ss_pred --cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCC-cchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEec
Q 046015 102 --IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKC-TNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSH 178 (352)
Q Consensus 102 --~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~-~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~ 178 (352)
.|..++.|++.|++|++++++++++|+|||||||||+|... +++++|+.|+++||++|++..+ . +++++||+++|
T Consensus 79 s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~~~~-~-~~~~~lsi~v~ 156 (334)
T smart00636 79 SDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDKEGA-E-GKGYLLTIAVP 156 (334)
T ss_pred CcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHHhcc-c-CCceEEEEEec
Confidence 79999999999999999999999999999999999999753 6788999999999999987622 1 34689999999
Q ss_pred CCccccccCCC-hhhhhccCcEEEeeccccCCCCCCchh----------------------HHhHcCCCCcceeeecccc
Q 046015 179 HLPALESVSYP-LDSMQRNLDWIHVLTFDYYLPTRDNFT----------------------EWLKRGFQAKKLVLGLPYH 235 (352)
Q Consensus 179 ~~~~~~~~~~d-~~~l~~~vD~i~~m~yd~~~~~~~~~~----------------------~~~~~g~p~~Kivlglp~y 235 (352)
+.+......|+ +.++.+++|+|++|+||++++|+...+ .|++.|+|++||+||+|+|
T Consensus 157 ~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Y 236 (334)
T smart00636 157 AGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDPEKYNVDYAVKYYLCKGVPPSKLVLGIPFY 236 (334)
T ss_pred CChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCCCCccHHHHHHHHHHcCCCHHHeEEeeccc
Confidence 87665544578 599999999999999999987754211 5667899999999999999
Q ss_pred eeeeeecCCCCCCCCCCCCCCCC-----CCCccccHHHHHhhhhcCCCceeEEEeccceeEEEEe-C-CEEEEeCcHHHH
Q 046015 236 GYAWTLVNPDENPVGSPATGPAI-----TIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSA-K-TTWVNFDGVETI 308 (352)
Q Consensus 236 G~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~-~-~~~i~ydd~~S~ 308 (352)
|++|++.++...++++|..|++. ..+|.++|.|||+.+ + +...||+.+.++|.|. + ++||+|||++|+
T Consensus 237 G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~--~~~~~d~~~~~~y~~~~~~~~~v~ydd~~Si 311 (334)
T smart00636 237 GRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---G--ATVVWDDTAKAPYAYNPGTGQWVSYDDPRSI 311 (334)
T ss_pred cCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---C--cEEEEcCCCceeEEEECCCCEEEEcCCHHHH
Confidence 99999998888888888877643 367899999999965 5 8899999999999995 4 599999999999
Q ss_pred HHHHHHHHhcCCceEEEEeccCC
Q 046015 309 RSKVSFAKEKGLLGYHVFQLSND 331 (352)
Q Consensus 309 ~~K~~~~~~~~l~Gi~~W~l~~D 331 (352)
+.|++|++++||||+++|+|++|
T Consensus 312 ~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 312 KAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHhCCCCeEEEEeecCC
Confidence 99999999999999999999997
No 7
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.1e-59 Score=420.39 Aligned_cols=316 Identities=21% Similarity=0.341 Sum_probs=257.0
Q ss_pred CCCCcEEEEEecCCC-----CCCCCCCCCCCccEEEEeeEEEeCCCceEe-------------------eCCC---ChHH
Q 046015 24 SSPNWIRGGYWHAHS-----ELPIAEIHSALFSNLMCAFAFINSSTYNIF-------------------INST---SEQF 76 (352)
Q Consensus 24 ~~~~~~v~~y~~~~~-----~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~-------------------~~~~---~~~~ 76 (352)
+.+..+|+|||++|+ .|.+.+||++++|||.|+|+.|+.++.... ...+ -...
T Consensus 34 ~d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~ 113 (441)
T COG3325 34 SDDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGH 113 (441)
T ss_pred CCCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccch
Confidence 446688999999943 688899999999999999999999873210 0001 1233
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCc---cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC---------Ccc
Q 046015 77 FVNFTNTVKHRNPSVITLLSVWGGA---IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK---------CTN 144 (352)
Q Consensus 77 ~~~~~~~lk~~~~~~kvllsiGg~~---~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~---------~~~ 144 (352)
+..+ +.+|+++|++|+++|||||+ .|+.++.+.+.|++|++++++++++|+|||||||||||++ +++
T Consensus 114 ~~~L-~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~d 192 (441)
T COG3325 114 FGAL-FDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKD 192 (441)
T ss_pred HHHH-HHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCccc
Confidence 4455 47999999999999999999 9999999999999999999999999999999999999974 568
Q ss_pred hhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCChhhhhccCcEEEeeccccCCCCCCchh--------
Q 046015 145 MTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNFT-------- 216 (352)
Q Consensus 145 ~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~-------- 216 (352)
.++|+.||++||++|...+.++||. ++||+|.|+.+.... ..+..++.++|||||+||||+||+|.+..+
T Consensus 193 ~~ny~~Ll~eLR~~LD~a~~edgr~-Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~Ly~~ 270 (441)
T COG3325 193 KANYVLLLQELRKKLDKAGVEDGRH-YQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAWNETLGHHAALYGT 270 (441)
T ss_pred HHHHHHHHHHHHHHHhhcccccCce-EEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeecccccccccccccccccC
Confidence 8999999999999999998888777 899999999988877 688999999999999999999999998765
Q ss_pred --------------------HHhH----cCCCCcceeeecccceeeeeecCCCCCC----CCCCCC--CCC--CCCCccc
Q 046015 217 --------------------EWLK----RGFQAKKLVLGLPYHGYAWTLVNPDENP----VGSPAT--GPA--ITIDGSV 264 (352)
Q Consensus 217 --------------------~~~~----~g~p~~Kivlglp~yG~~~~~~~~~~~~----~~~~~~--~~~--~~~~g~~ 264 (352)
.|+. .++||+|||||+|+|||.|..++....+ ...... |+. +...+.+
T Consensus 271 ~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a~n~ 350 (441)
T COG3325 271 PKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEAGNG 350 (441)
T ss_pred CCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCccccccc
Confidence 2544 4688999999999999999887754432 111111 111 1111112
Q ss_pred cHHH-----HH-hhhhcCCCceeEEEeccceeEEEE--eCCEEEEeCcHHHHHHHHHHHHhcCCceEEEEeccCCCChhh
Q 046015 265 GYKF-----IK-GFIRDYGYGAASVYNHSYVMNFFS--AKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDDKWEL 336 (352)
Q Consensus 265 ~y~~-----i~-~~~~~~~~~~~~~~d~~~~~~y~~--~~~~~i~ydd~~S~~~K~~~~~~~~l~Gi~~W~l~~Dd~~~l 336 (352)
.+.- +- +..+.++ +.+.||+++++||+| ..+.+|+|||++|++.|.+||++++|||+|+|++++|-...+
T Consensus 351 ~~~~~~~~~l~~n~~~~~g--~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD~n~~l 428 (441)
T COG3325 351 DKDYGKAYDLDANNAGKNG--YERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGDENGVL 428 (441)
T ss_pred CccchhhccccccccCCCC--eeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCCcchhH
Confidence 2211 11 1223344 999999999999999 567899999999999999999999999999999999988999
Q ss_pred HHHHHHHh
Q 046015 337 SSAGMQLL 344 (352)
Q Consensus 337 ~~a~~~~l 344 (352)
+++++++|
T Consensus 429 lna~~~~l 436 (441)
T COG3325 429 LNAVNEGL 436 (441)
T ss_pred HHHhhccc
Confidence 99998876
No 8
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=3.3e-57 Score=418.86 Aligned_cols=261 Identities=23% Similarity=0.420 Sum_probs=225.1
Q ss_pred EEEEecCCCCC----CCC-CCCCCCccEEEEeeEEEeCCCceEeeC-------------------CCChHHHHHHHHHHH
Q 046015 30 RGGYWHAHSEL----PIA-EIHSALFSNLMCAFAFINSSTYNIFIN-------------------STSEQFFVNFTNTVK 85 (352)
Q Consensus 30 v~~y~~~~~~~----~~~-~~~~~~~Thi~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~lk 85 (352)
|+|||++|..+ .+. ++|.++||||+|+|+.+++++..+... +.....+..+. .+|
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lk 79 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLR-KLK 79 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHH-HHH
Confidence 58999996443 334 589999999999999999987655432 11345567775 689
Q ss_pred hcCCCcEEEEEEeCCc---cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC---------CcchhHHHHHHH
Q 046015 86 HRNPSVITLLSVWGGA---IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK---------CTNMTKLGTLFD 153 (352)
Q Consensus 86 ~~~~~~kvllsiGg~~---~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~---------~~~~~~~~~~l~ 153 (352)
+++|++|||+|||||. .|+.++++++.|++|++++++++++|+|||||||||+|.. ++++++|+.||+
T Consensus 80 ~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~~ll~ 159 (322)
T cd06548 80 QKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLK 159 (322)
T ss_pred HhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHHHHHH
Confidence 9999999999999987 8999999999999999999999999999999999999975 478999999999
Q ss_pred HHHHHHhhhhhhcCCceeEEEEEecCCccccccCCChhhhhccCcEEEeeccccCCCCCCchh-----------------
Q 046015 154 EWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNFT----------------- 216 (352)
Q Consensus 154 ~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~----------------- 216 (352)
+||++|++.++++++ +++||+++|+.+.... .+++++|.++||+|++|+||++++|+...+
T Consensus 160 ~Lr~~l~~~~~~~~~-~~~Ls~av~~~~~~~~-~~~~~~l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~~~~~~~~~ 237 (322)
T cd06548 160 ELREALDALGAETGR-KYLLTIAAPAGPDKLD-KLEVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADPPGGYS 237 (322)
T ss_pred HHHHHHHHhhhccCC-ceEEEEEccCCHHHHh-cCCHHHHhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCcc
Confidence 999999987655444 4899999998766544 478999999999999999999998763211
Q ss_pred ------HHhHcCCCCcceeeecccceeeeeecCCCCCCCCCCCCCCCCCCCccccHHHHHhhhhcCCCceeEEEecccee
Q 046015 217 ------EWLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVM 290 (352)
Q Consensus 217 ------~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~ 290 (352)
.|++.|+|++||+||+|+|||.|++ ++..||+.+.+
T Consensus 238 v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~--------------------------------------~~~~~D~~~~~ 279 (322)
T cd06548 238 VDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG--------------------------------------YTRYWDEVAKA 279 (322)
T ss_pred HHHHHHHHHHcCCCHHHeEEEecccccccCC--------------------------------------cEEEEcCCcce
Confidence 6788899999999999999999953 35789999999
Q ss_pred EEEEeC--CEEEEeCcHHHHHHHHHHHHhcCCceEEEEeccCC
Q 046015 291 NFFSAK--TTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSND 331 (352)
Q Consensus 291 ~y~~~~--~~~i~ydd~~S~~~K~~~~~~~~l~Gi~~W~l~~D 331 (352)
+|.+++ ++||+|||++|++.|++||+++||||+|+|++++|
T Consensus 280 ~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 280 PYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred eEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 999966 89999999999999999999999999999999998
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=5.5e-53 Score=395.60 Aligned_cols=298 Identities=25% Similarity=0.469 Sum_probs=247.7
Q ss_pred cEEEEEecCCCC-----CCCCCCCCCCccEEEEeeEEEeCCCceEe-----eCCC-ChHHHHHHHHHHHhcCCCcEEEEE
Q 046015 28 WIRGGYWHAHSE-----LPIAEIHSALFSNLMCAFAFINSSTYNIF-----INST-SEQFFVNFTNTVKHRNPSVITLLS 96 (352)
Q Consensus 28 ~~v~~y~~~~~~-----~~~~~~~~~~~Thi~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~lk~~~~~~kvlls 96 (352)
++|+|||+.+.. +.+++++.+.||||+++|+.+++++.... .... ....+..+ +.+|+++|++||++|
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~kvlls 79 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNL-KELKAKNPGVKVLLS 79 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHH-HHHHHHHTT-EEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHH-HHHHhhccCceEEEE
Confidence 479999999533 66889999999999999999999985532 2233 33444444 578899999999999
Q ss_pred EeCCc----cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCC---cchhHHHHHHHHHHHHHhhhhhhcCCc
Q 046015 97 VWGGA----IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKC---TNMTKLGTLFDEWRAEVTSESRKSGKS 169 (352)
Q Consensus 97 iGg~~----~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~---~~~~~~~~~l~~lr~~l~~~~~~~~~~ 169 (352)
|||+. .|..++.+++.|++|+++|++++++|+|||||||||++... +++.+|..|+++||++|++..+.. .
T Consensus 80 igg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~~--~ 157 (343)
T PF00704_consen 80 IGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALKRANRSG--K 157 (343)
T ss_dssp EEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHHHHHHHH--S
T ss_pred eccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhccccccc--c
Confidence 99993 78999999999999999999999999999999999999753 589999999999999999875433 2
Q ss_pred eeEEEEEecCCccccccCCChhhhhccCcEEEeeccccCCCCCCch----------------------hHHhHcCCCCcc
Q 046015 170 QLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNF----------------------TEWLKRGFQAKK 227 (352)
Q Consensus 170 ~~~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~----------------------~~~~~~g~p~~K 227 (352)
+++||+++|+.+.... .++++++.++||+|++|+||++++|+... ..|+..|+|++|
T Consensus 158 ~~~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~g~p~~K 236 (343)
T PF00704_consen 158 GYILSVAVPPSPDYYD-KYDYKELAQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWDSNYYSVDSAVQYWIKAGVPPSK 236 (343)
T ss_dssp TSEEEEEEECSHHHHT-THHHHHHHTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTSGTSSSHHHHHHHHHHTTSTGGG
T ss_pred eeEEeecccccccccc-ccccccccccccccccccccCCCCcccccccccccccCCccCCCceeeeehhhhccccCChhh
Confidence 4899999998776554 35899999999999999999998654411 166778999999
Q ss_pred eeeecccceeeeeecCCCCCCCCCCC---CCCCCCCCccccHHHHHhhhhcCCCceeEEEeccceeEEEEeC--CEEEEe
Q 046015 228 LVLGLPYHGYAWTLVNPDENPVGSPA---TGPAITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAK--TTWVNF 302 (352)
Q Consensus 228 ivlglp~yG~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~--~~~i~y 302 (352)
|+||+|+||+.|++.+.......++. .+..+..++.++|.++|..+...+ +...||+.+.++|.+.. ++||+|
T Consensus 237 l~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~y~~~~~~~~~i~~ 314 (343)
T PF00704_consen 237 LVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNG--YTVQWDDTAQAPYAYNDDKKHWISY 314 (343)
T ss_dssp EEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTT--EEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCC--cceEEeecccceEEEecCCCeEEEe
Confidence 99999999999998887766655443 344556788999999999987777 89999999999999966 799999
Q ss_pred CcHHHHHHHHHHHHhcCCceEEEEeccCC
Q 046015 303 DGVETIRSKVSFAKEKGLLGYHVFQLSND 331 (352)
Q Consensus 303 dd~~S~~~K~~~~~~~~l~Gi~~W~l~~D 331 (352)
||++|++.|++|++++||||+++|+|++|
T Consensus 315 e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 315 EDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 99999999999999999999999999998
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=1.5e-52 Score=387.28 Aligned_cols=276 Identities=18% Similarity=0.224 Sum_probs=223.0
Q ss_pred EEEEEecCCC--CCCCCCCCCCCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEE--EEEeCCc--c
Q 046015 29 IRGGYWHAHS--ELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITL--LSVWGGA--I 102 (352)
Q Consensus 29 ~v~~y~~~~~--~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvl--lsiGg~~--~ 102 (352)
.++|||+++. ++.+.+++.++||||+++|+.++++|+.+...+..+. -..++..+|+++|++||+ +++|||. .
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~-~~~~~~~lk~~~~~lkvlp~i~~gg~~~~~ 82 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDI-DKGWIEEVRKANKNIKILPRVLFEGWSYQD 82 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCeeeeecCcch-hhHHHHHHHhhCCCcEEEeEEEECCCCHHH
Confidence 4789999954 5778899999999999999999998765555432111 123445788999999999 6679998 7
Q ss_pred chhhhcChhhHHHHHHHHHHHHHHcCCCeEEEe-ecCCCC---CcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEec
Q 046015 103 FSSMINQSSNRRSFIKSSIEMARFYRFHGLDLH-GVLPDK---CTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSH 178 (352)
Q Consensus 103 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD-~e~~~~---~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~ 178 (352)
|+.+++|++.|++||+++++++++||||||||| ||+|.. ++++++|+.|+++||++|++. ++.+++++|
T Consensus 83 f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~~~-------~~~l~~~v~ 155 (318)
T cd02876 83 LQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLHSA-------NLKLILVIP 155 (318)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHhhc-------CCEEEEEEc
Confidence 999999999999999999999999999999999 999964 358899999999999999875 356777777
Q ss_pred CCccc-----cccCCChhhhhccCcEEEeeccccCCCCCCchh------------HHhHcC-CCCcceeeecccceeeee
Q 046015 179 HLPAL-----ESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNFT------------EWLKRG-FQAKKLVLGLPYHGYAWT 240 (352)
Q Consensus 179 ~~~~~-----~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~------------~~~~~g-~p~~Kivlglp~yG~~~~ 240 (352)
+.... ....||+++|.+++|+|+||+||+|++ ..+.. +++..| +|++||+||+|+|||+|+
T Consensus 156 ~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~-~~~g~~apl~~v~~~v~~~~~~~~vp~~KlvlGip~YG~~w~ 234 (318)
T cd02876 156 PPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP-QRPGPNAPLSWVRSCLELLLPESGKKRAKILLGLNFYGNDYT 234 (318)
T ss_pred CccccccccccccccCHHHHHhhccEEEEEeeccCCC-CCCCCCCCcHHHHHHHHHHHhcCCCCHHHeEEeccccccccc
Confidence 54321 223489999999999999999999985 22111 566666 999999999999999997
Q ss_pred ecCCCCCCCCCCCCCCCCCCCccccHHHHHhhhhcCCCceeEEEeccc-eeEEEEeC---CEEEEeCcHHHHHHHHHHHH
Q 046015 241 LVNPDENPVGSPATGPAITIDGSVGYKFIKGFIRDYGYGAASVYNHSY-VMNFFSAK---TTWVNFDGVETIRSKVSFAK 316 (352)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~-~~~y~~~~---~~~i~ydd~~S~~~K~~~~~ 316 (352)
+.+ .+ +.+++.+.++++++.+ ++..||+.+ ..+|.|.+ ++||+|||++|++.|+++++
T Consensus 235 ~~~-----~~-----------~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~~~~~v~ydd~~Si~~K~~~a~ 296 (318)
T cd02876 235 LPG-----GG-----------GAITGSEYLKLLKSNK--PKLQWDEKSAEHFFEYKNKGGKHAVFYPTLKSIQLRLDLAK 296 (318)
T ss_pred cCC-----CC-----------ceeehHHHHHHHHhcC--CCceeccCCCcceEEEecCCCcEEEEeCCHHHHHHHHHHHH
Confidence 543 11 1234455666666666 789999996 55577744 79999999999999999999
Q ss_pred hcCCceEEEEeccCCC
Q 046015 317 EKGLLGYHVFQLSNDD 332 (352)
Q Consensus 317 ~~~l~Gi~~W~l~~Dd 332 (352)
++|+ |+|+|+|++++
T Consensus 297 ~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 297 ELGT-GISIWELGQGL 311 (318)
T ss_pred HcCC-cEEEEcccCCc
Confidence 9999 99999999997
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=3.2e-51 Score=382.02 Aligned_cols=285 Identities=17% Similarity=0.211 Sum_probs=225.5
Q ss_pred CCCcEEEEEecCCCCCCCCCCCCCCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCccch
Q 046015 25 SPNWIRGGYWHAHSELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFS 104 (352)
Q Consensus 25 ~~~~~v~~y~~~~~~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~~~~ 104 (352)
++.+.|+||.... ..-...+++.+|||.+. + +.+ .+++..+|++ ++||+++. ++ . .
T Consensus 33 ~~~~~~~~~~~~~--~~~~~~~~~~~tti~~~-------~------~~~----~~~~~~A~~~--~v~v~~~~-~~-~-~ 88 (358)
T cd02875 33 GPRFEFLVFSVNS--TNYPNYDWSKVTTIAIF-------G------DID----DELLCYAHSK--GVRLVLKG-DV-P-L 88 (358)
T ss_pred CCceEEEEEEeCC--CcCcccccccceEEEec-------C------CCC----HHHHHHHHHc--CCEEEEEC-cc-C-H
Confidence 3567899999764 55578889999999975 1 111 1354445554 89999873 22 2 2
Q ss_pred hhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC--CcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCcc
Q 046015 105 SMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK--CTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPA 182 (352)
Q Consensus 105 ~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~ 182 (352)
..+.|++.|++||+++++++++|||||||||||+|.. ++++++|+.|+++||++|++.+ ++++||+++|..+.
T Consensus 89 ~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~~l~~~~-----~~~~Lsvav~~~p~ 163 (358)
T cd02875 89 EQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTKAFKKEN-----PGYQISFDVAWSPS 163 (358)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHHHHhhcC-----CCcEEEEEEecCcc
Confidence 3567999999999999999999999999999999963 4688999999999999999763 35889999987665
Q ss_pred ccccC-CChhhhhccCcEEEeeccccCCC-CCC---c---hh---------HHhHcCCCCcceeeecccceeeeeecCCC
Q 046015 183 LESVS-YPLDSMQRNLDWIHVLTFDYYLP-TRD---N---FT---------EWLKRGFQAKKLVLGLPYHGYAWTLVNPD 245 (352)
Q Consensus 183 ~~~~~-~d~~~l~~~vD~i~~m~yd~~~~-~~~---~---~~---------~~~~~g~p~~Kivlglp~yG~~~~~~~~~ 245 (352)
....+ ||+++|.++||+|+||+||+|++ |.. . .+ .|+..|+|++||+||+|+|||+|++.+++
T Consensus 164 ~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~~v~~~v~~~~~~gvp~~KLvLGip~YGr~w~~~~~~ 243 (358)
T cd02875 164 CIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYSQTLSGYNNFTKLGIDPKKLVMGLPWYGYDYPCLNGN 243 (358)
T ss_pred cccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCchhHHHHHHHHHHcCCCHHHeEEEeCCCCCceeCCCCc
Confidence 54433 99999999999999999999974 541 1 11 67888999999999999999999876544
Q ss_pred CC-----CCCCCCCCCCC--CCCccccHHHHHhhhhcCCCceeEEEeccceeEEEE-e---C-CEEEEeCcHHHHHHHHH
Q 046015 246 EN-----PVGSPATGPAI--TIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFS-A---K-TTWVNFDGVETIRSKVS 313 (352)
Q Consensus 246 ~~-----~~~~~~~~~~~--~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~---~-~~~i~ydd~~S~~~K~~ 313 (352)
.. ..+.|..|... ..++.++|.|+|+.+++.+ +.+.||+.++++|.+ . + .+||||||++|++.|++
T Consensus 244 ~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~--~~~~wD~~~~~py~~y~d~~g~~~~V~ydD~~Si~~K~~ 321 (358)
T cd02875 244 LEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSI--GGRLWDSEQKSPFYNYKDKQGNLHQVWYDNPQSLSIKVA 321 (358)
T ss_pred ccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCC--CceeeccccccceEEEecCCCcEEEEEeCCHHHHHHHHH
Confidence 11 12233333221 1335799999999888776 789999999999974 2 2 27999999999999999
Q ss_pred HHHhcCCceEEEEeccCCCChhhHHHH
Q 046015 314 FAKEKGLLGYHVFQLSNDDKWELSSAG 340 (352)
Q Consensus 314 ~~~~~~l~Gi~~W~l~~Dd~~~l~~a~ 340 (352)
||+++||||+++|+|++||+.+.+.|.
T Consensus 322 ~a~~~gL~Gv~iW~ld~dD~~g~~~~~ 348 (358)
T cd02875 322 YAKNLGLKGIGMWNGDLLDYSGLPIAE 348 (358)
T ss_pred HHHhCCCCeEEEEeccccccCCCchhh
Confidence 999999999999999999999998775
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=1.3e-49 Score=367.37 Aligned_cols=274 Identities=16% Similarity=0.263 Sum_probs=226.4
Q ss_pred EEEEEecCCCC--CCCCCCCCCCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCc-----
Q 046015 29 IRGGYWHAHSE--LPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGA----- 101 (352)
Q Consensus 29 ~v~~y~~~~~~--~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~----- 101 (352)
.++||+.++.. +...+-..+++|||++.++.+.++|. +... . ..++++.+|++ ++||+++|||+.
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~lt~v~p~w~~~~~~g~-~~~~--~---~~~~~~~a~~~--~~kv~~~i~~~~~~~~~ 74 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAPYLTYIAPFWYGVDADGT-LTGL--P---DERLIEAAKRR--GVKPLLVITNLTNGNFD 74 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcCCCCEEEEEEEEEcCCCC-CCCC--C---CHHHHHHHHHC--CCeEEEEEecCCCCCCC
Confidence 58999998544 45556677899999999999999873 3222 1 23566656665 899999999873
Q ss_pred --cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecC
Q 046015 102 --IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHH 179 (352)
Q Consensus 102 --~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~ 179 (352)
.++.++.|++.|++|++++++++++|+|||||||||++. ++++++|+.|+++||.+|++. +++|++++++
T Consensus 75 ~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~-~~d~~~~~~fl~~lr~~l~~~-------~~~lsv~~~p 146 (313)
T cd02874 75 SELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVP-PEDREAYTQFLRELSDRLHPA-------GYTLSTAVVP 146 (313)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCC-HHHHHHHHHHHHHHHHHhhhc-------CcEEEEEecC
Confidence 678999999999999999999999999999999999986 588999999999999999864 3678887765
Q ss_pred Ccc-----ccccCCChhhhhccCcEEEeeccccCCCCCCchh-----------HHhHcCCCCcceeeecccceeeeeecC
Q 046015 180 LPA-----LESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNFT-----------EWLKRGFQAKKLVLGLPYHGYAWTLVN 243 (352)
Q Consensus 180 ~~~-----~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~-----------~~~~~g~p~~Kivlglp~yG~~~~~~~ 243 (352)
... .+...||++++.+++|+|++|+||++++|..+.+ .+...|+|++||+||+|+||+.|++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~~~~gp~a~~~~~~~~~~~~~~gvp~~KlvlGip~YG~~w~~~~ 226 (313)
T cd02874 147 KTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRGGPPGPVAPIGWVERVLQYAVTQIPREKILLGIPLYGYDWTLPY 226 (313)
T ss_pred ccccccccccccccCHHHHHhhCCEEEEEEeccCCCCCCCCccCChHHHHHHHHHHHhcCCHHHEEEeecccccccccCC
Confidence 432 2234589999999999999999999987654433 445579999999999999999998654
Q ss_pred CCCCCCCCCCCCCCCCCCccccHHHHHhhhhcCCCceeEEEeccceeEEEE-e----CCEEEEeCcHHHHHHHHHHHHhc
Q 046015 244 PDENPVGSPATGPAITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFS-A----KTTWVNFDGVETIRSKVSFAKEK 318 (352)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~----~~~~i~ydd~~S~~~K~~~~~~~ 318 (352)
+. ....+.++|.++|+++.+.+ +.+.||+.++++|.. . ..+||+|||++|++.|+++++++
T Consensus 227 ~~------------~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~~Si~~K~~~~~~~ 292 (313)
T cd02874 227 KK------------GGKASTISPQQAINLAKRYG--AEIQYDEEAQSPFFRYVDEQGRRHEVWFEDARSLQAKFELAKEY 292 (313)
T ss_pred CC------------CcCccccCHHHHHHHHHHcC--CCeEECcccCCCcEEEEeCCCCEEEEEeCcHHHHHHHHHHHHHc
Confidence 11 12236788999999998888 899999999988764 2 35899999999999999999999
Q ss_pred CCceEEEEeccCCC
Q 046015 319 GLLGYHVFQLSNDD 332 (352)
Q Consensus 319 ~l~Gi~~W~l~~Dd 332 (352)
||||+++|+|++||
T Consensus 293 ~lgGv~iW~lg~dD 306 (313)
T cd02874 293 GLRGVSYWRLGLED 306 (313)
T ss_pred CCCeEEEEECCCCC
Confidence 99999999999999
No 13
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=4.6e-46 Score=340.25 Aligned_cols=273 Identities=15% Similarity=0.175 Sum_probs=214.5
Q ss_pred EEEEEecCCCC--CCCCCCCCCCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCc----c
Q 046015 29 IRGGYWHAHSE--LPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGA----I 102 (352)
Q Consensus 29 ~v~~y~~~~~~--~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~----~ 102 (352)
+++|||.++.. +.........+|||++.|+.+...++.+..... . ....+++.+|.++|-++++.+++|+. .
T Consensus 1 ~~l~~~~~w~~~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~d-~-~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~ 78 (298)
T cd06549 1 IALAFYTPWDDASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFVD-P-QGVAIIAAAKAHPKVLPLVQNISGGAWDGKN 78 (298)
T ss_pred CeeEEEecCChhhHHHHHHhhccCCEEeceeEEEecCCCceeccCC-h-HHHHHHHHHHcCCceeEEEEecCCCCCCHHH
Confidence 36899998544 334444557899999999999855456654322 2 22334456777777788888887754 6
Q ss_pred chhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCcc
Q 046015 103 FSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPA 182 (352)
Q Consensus 103 ~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~ 182 (352)
|+.+++|++.|++|++++++++++|+|||||||||++. ++++++|+.|+++||++|++. +++|++++|+.+.
T Consensus 79 ~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~-~~d~~~~~~fl~eL~~~l~~~-------~~~lsv~v~~~~~ 150 (298)
T cd06549 79 IARLLADPSARAKFIANIAAYLERNQADGIVLDFEELP-ADDLPKYVAFLSELRRRLPAQ-------GKQLTVTVPADEA 150 (298)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC-hhHHHHHHHHHHHHHHHhhhc-------CcEEEEEecCCCC
Confidence 89999999999999999999999999999999999986 589999999999999999875 4689999986532
Q ss_pred ccccCCChhhhhccCcEEEeeccccCCCCCCchh-----------HHhHcCCCCcceeeecccceeeeeecCCCCCCCCC
Q 046015 183 LESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNFT-----------EWLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGS 251 (352)
Q Consensus 183 ~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~-----------~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~ 251 (352)
.||++++.+++|+|+||+||+|+++..+.+ .+...++|++||+||+|+||++|++....
T Consensus 151 ----~~d~~~l~~~~D~v~lMtYD~~~~~~~~gp~a~~~~~~~~~~~~~~~vp~~KlvlGip~YG~~w~~~~~~------ 220 (298)
T cd06549 151 ----DWNLKALARNADKLILMAYDEHYQGGAPGPIASQDWFESNLAQAVKKLPPEKLIVALGSYGYDWTKGGNT------ 220 (298)
T ss_pred ----CCCHHHHHHhCCEEEEEEeccCCCCCCCCCCCChhhHHHHHHHHHhCCCHHHEEEEecccCccccCCCCC------
Confidence 489999999999999999999987655433 23346999999999999999999753210
Q ss_pred CCCCCCCCCCccccHHHHHhhhhcCCCceeEEEeccceeE-EEE-e---CCEEEEeCcHHHHHHHHHHHHhcCCceEEEE
Q 046015 252 PATGPAITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMN-FFS-A---KTTWVNFDGVETIRSKVSFAKEKGLLGYHVF 326 (352)
Q Consensus 252 ~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~-y~~-~---~~~~i~ydd~~S~~~K~~~~~~~~l~Gi~~W 326 (352)
..++..+...++.+.+ ..+.||+....+ |.| + ..|+|||+|++|++.|+++++++||+|+++|
T Consensus 221 ----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~~a~~~~l~Gva~W 288 (298)
T cd06549 221 ----------KAISSEAAWLLAAHAS--AAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLKAVQRLGPAGVALW 288 (298)
T ss_pred ----------cccCHHHHHHHHHHcC--CcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHHHHHHcCCCcEEEE
Confidence 1234455555565556 678887766444 555 2 2479999999999999999999999999999
Q ss_pred eccCCCC
Q 046015 327 QLSNDDK 333 (352)
Q Consensus 327 ~l~~Dd~ 333 (352)
+|++||+
T Consensus 289 ~lg~ed~ 295 (298)
T cd06549 289 RLGSEDP 295 (298)
T ss_pred eccCCCC
Confidence 9999984
No 14
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=1e-44 Score=324.50 Aligned_cols=231 Identities=26% Similarity=0.412 Sum_probs=190.8
Q ss_pred EEEEecCCCCCC--CCCCCCCCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCc--cchh
Q 046015 30 RGGYWHAHSELP--IAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGA--IFSS 105 (352)
Q Consensus 30 v~~y~~~~~~~~--~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~--~~~~ 105 (352)
|+|||++++... +++++.++||||+++|+.++++| .+...+. ...+..+++.+|+ +++||++|||||. .+..
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G-~l~~~~~-~~~~~~~~~~~~~--~~~kvl~sigg~~~~~~~~ 76 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANG-TLNANPV-RSELNSVVNAAHA--HNVKILISLAGGSPPEFTA 76 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCC-eEEecCc-HHHHHHHHHHHHh--CCCEEEEEEcCCCCCcchh
Confidence 589999976544 89999999999999999999987 5665543 2345566655655 4899999999987 6777
Q ss_pred hhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccc
Q 046015 106 MINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALES 185 (352)
Q Consensus 106 ~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~ 185 (352)
++.+++.|++|++++++++++|+|||||||||+|... +++|..|+++||+++++. +++|++++++....
T Consensus 77 ~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~--~~~~~~fv~~Lr~~l~~~-------~~~lt~av~~~~~~-- 145 (253)
T cd06545 77 ALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVT--FGDYLVFIRALYAALKKE-------GKLLTAAVSSWNGG-- 145 (253)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCcc--HhHHHHHHHHHHHHHhhc-------CcEEEEEccCcccc--
Confidence 8899999999999999999999999999999999742 789999999999999865 36899998764321
Q ss_pred cCCChhhhhccCcEEEeeccccCCCCCCchh--------------HHhHcCC-CCcceeeecccceeeeeecCCCCCCCC
Q 046015 186 VSYPLDSMQRNLDWIHVLTFDYYLPTRDNFT--------------EWLKRGF-QAKKLVLGLPYHGYAWTLVNPDENPVG 250 (352)
Q Consensus 186 ~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~--------------~~~~~g~-p~~Kivlglp~yG~~~~~~~~~~~~~~ 250 (352)
.+ ..++.+++|+|+||+||++|+|....+ +|...|+ |++||+||+|+||++|
T Consensus 146 -~~-~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w----------- 212 (253)
T cd06545 146 -AV-SDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYDDAVNDLNYWNERGLASKDKLVLGLPFYGYGF----------- 212 (253)
T ss_pred -cc-cHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchHhHHHHHHHHHHcCCCCHHHEEEEeCCccccc-----------
Confidence 13 357789999999999999998843211 6778887 9999999999999977
Q ss_pred CCCCCCCCCCCccccHHHHHhhhhcCCCceeEEEeccceeEEEEeCCEEEEeCcHHHHHHHHHHHHhcCCceEEEEeccC
Q 046015 251 SPATGPAITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSN 330 (352)
Q Consensus 251 ~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~~~~l~Gi~~W~l~~ 330 (352)
+|+++.+++.|+++++++ +||+|+|++++
T Consensus 213 --------------------------------------------------~~~~~~~~~~~~~~~~~~-~gG~~~w~~~~ 241 (253)
T cd06545 213 --------------------------------------------------YYNGIPTIRNKVAFAKQN-YGGVMIWELSQ 241 (253)
T ss_pred --------------------------------------------------cCCCHHHHHHHHHHHHHh-cCeEEEEeccC
Confidence 266678899999999999 99999999999
Q ss_pred CC--ChhhHHH
Q 046015 331 DD--KWELSSA 339 (352)
Q Consensus 331 Dd--~~~l~~a 339 (352)
|. ..+|+++
T Consensus 242 d~~~~~~l~~~ 252 (253)
T cd06545 242 DASGENSLLNA 252 (253)
T ss_pred CCCCCcchhhc
Confidence 97 4566554
No 15
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=2.6e-37 Score=269.72 Aligned_cols=203 Identities=24% Similarity=0.387 Sum_probs=170.0
Q ss_pred EEEEecCCCCCC---CCCCCCCCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCc--cch
Q 046015 30 RGGYWHAHSELP---IAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGA--IFS 104 (352)
Q Consensus 30 v~~y~~~~~~~~---~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~--~~~ 104 (352)
++|||..+.... +..++.++||||+++|+.+++++......+.........++.+++++|++||++||||+. ...
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~ 80 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTDSSPF 80 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCc
Confidence 589999955444 488999999999999999999875543222222333344456888789999999999988 222
Q ss_pred hhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCc--chhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCcc
Q 046015 105 SMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCT--NMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPA 182 (352)
Q Consensus 105 ~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~--~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~ 182 (352)
.++.+++.|++|++++++++++|+|||||||||+|.... ++++|..|+++||+++++. +++||+++|+.+.
T Consensus 81 ~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~-------~~~ls~a~~~~~~ 153 (210)
T cd00598 81 TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAA-------NYLLTIAVPASYF 153 (210)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhccc-------CcEEEEEecCChH
Confidence 788899999999999999999999999999999998533 5899999999999999864 4799999998766
Q ss_pred ccccCCChhhhhccCcEEEeeccccCCCCCCchhHHhHcCCCCcceeeecccceeeeeecCCCCCCCCCCCCCCCCCCCc
Q 046015 183 LESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNFTEWLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAITIDG 262 (352)
Q Consensus 183 ~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g 262 (352)
.....+++.++.+++|++++|+|| |++|+|+|
T Consensus 154 ~~~~~~~~~~l~~~vD~v~vm~Yd---------------------l~~g~~~~--------------------------- 185 (210)
T cd00598 154 DLGYAYDVPAIGDYVDFVNVMTYD---------------------LVLGVPFY--------------------------- 185 (210)
T ss_pred HhhccCCHHHHHhhCCEEEEeeec---------------------ccccchhh---------------------------
Confidence 554348999999999999999999 88888886
Q ss_pred cccHHHHHhhhhcCCCceeEEEeccceeEEEEeCCEEEEeCcHHHHHHHHHHHHhcCCceEEEEeccCC
Q 046015 263 SVGYKFIKGFIRDYGYGAASVYNHSYVMNFFSAKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSND 331 (352)
Q Consensus 263 ~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~S~~~K~~~~~~~~l~Gi~~W~l~~D 331 (352)
|++.|+++++++++||+++|++++|
T Consensus 186 --------------------------------------------s~~~k~~~~~~~~~gGv~~w~~~~d 210 (210)
T cd00598 186 --------------------------------------------SLGAKAKYAKQKGLGGVMIWELDQD 210 (210)
T ss_pred --------------------------------------------hHHHHHHHHHHcCCceEEEEeccCC
Confidence 7899999999999999999999987
No 16
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=9.9e-34 Score=256.59 Aligned_cols=223 Identities=17% Similarity=0.257 Sum_probs=183.2
Q ss_pred CcEEEEEEeCCc----c-----chhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHh
Q 046015 90 SVITLLSVWGGA----I-----FSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVT 160 (352)
Q Consensus 90 ~~kvllsiGg~~----~-----~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~ 160 (352)
+++.++.+.... . .+.++.|+..++++++++++.++++|+.|+.||+|... +.|++.|..|+|++|..++
T Consensus 160 ~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~-~~DR~~yt~flR~~r~~l~ 238 (423)
T COG3858 160 KIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVG-PGDRELYTDFLRQVRDALH 238 (423)
T ss_pred ccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCC-HHHHHHHHHHHHHHHHHhc
Confidence 567776664322 3 48889999999999999999999999999999999877 6999999999999999999
Q ss_pred hhhhhcCCceeEEEEEecCCccc-----cccCCChhhhhccCcEEEeeccccCCCCCCchh-----------HHhHcCCC
Q 046015 161 SESRKSGKSQLLLVMTSHHLPAL-----ESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNFT-----------EWLKRGFQ 224 (352)
Q Consensus 161 ~~~~~~~~~~~~ls~~~~~~~~~-----~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~-----------~~~~~g~p 224 (352)
+. ++.+++++++.... |...||+..+.+.+|+|.+|+||.|..|.++.. .+....+|
T Consensus 239 ~~-------G~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~gG~PG~vA~i~~vr~~ieya~T~iP 311 (423)
T COG3858 239 SG-------GYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSGGPPGPVASIGWVRKVIEYALTVIP 311 (423)
T ss_pred cC-------CeEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCCCCCCcccCchhHhhhhhhhheecc
Confidence 76 58999999965432 444599999999999999999999988866655 34445799
Q ss_pred CcceeeecccceeeeeecCCCCCCCCCCCCCCCCCCCccccHHHHHhhhhcCCCceeEEEeccceeEEEE----eC-CEE
Q 046015 225 AKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFS----AK-TTW 299 (352)
Q Consensus 225 ~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~----~~-~~~ 299 (352)
++||+||+|+||++|.+..+.. |. .... +++.+...+....+ .++.||..++.+|++ .+ .|+
T Consensus 312 ~~Kv~mGip~YGYDW~~~y~~~---g~-------~~~a-~~~~~~i~ia~~y~--A~Iq~D~~~qsp~F~y~D~eg~~h~ 378 (423)
T COG3858 312 AEKVMMGIPLYGYDWTLPYDPL---GY-------LARA-ISPDEAIDIANRYN--ATIQYDATSQSPFFYYVDKEGRYHE 378 (423)
T ss_pred hHHeEEccccccccccCCCCCC---cc-------eeee-cCcchhhhhhcccC--CccCcCccccCceEEEEcCCCceEE
Confidence 9999999999999997644321 11 1112 45555455555556 889999999999998 33 689
Q ss_pred EEeCcHHHHHHHHHHHHhcCCceEEEEeccCCCC
Q 046015 300 VNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDDK 333 (352)
Q Consensus 300 i~ydd~~S~~~K~~~~~~~~l~Gi~~W~l~~Dd~ 333 (352)
|||||.+|+..|++++|++||.||+.|.|+++|.
T Consensus 379 VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p 412 (423)
T COG3858 379 VWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDP 412 (423)
T ss_pred EEcCchHHHHHHHHHHHHcCCceEEEEEecCcch
Confidence 9999999999999999999999999999999993
No 17
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=9.8e-33 Score=245.92 Aligned_cols=191 Identities=15% Similarity=0.272 Sum_probs=143.8
Q ss_pred EEEEEecCCCC--------CCCCCCCCCCccEEEEeeEEEeCCCceEeeCCCC--h----HHHHHHHHHHHhcCCCcEEE
Q 046015 29 IRGGYWHAHSE--------LPIAEIHSALFSNLMCAFAFINSSTYNIFINSTS--E----QFFVNFTNTVKHRNPSVITL 94 (352)
Q Consensus 29 ~v~~y~~~~~~--------~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~lk~~~~~~kvl 94 (352)
++||||+.++. +.+..++..+||||+|+|+.++++| ++.+.++. . ..+.++ +.+ +++++|||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G-~l~~~d~~~~~~~~~~~~~~i-~~~--~~~g~KVl 76 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDG-NIHLNDHPPDHPRFTTLWTEL-AIL--QSSGVKVM 76 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCC-eEEECCCCCCcchhhHHHHHH-HHH--HhCCCEEE
Confidence 47899988321 1122456789999999999999976 67666542 1 222233 234 45799999
Q ss_pred EEEeCCc--cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeE
Q 046015 95 LSVWGGA--IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLL 172 (352)
Q Consensus 95 lsiGg~~--~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ 172 (352)
+|||||. .|+.++++++.|++|++++++++++|+|||||||||+|. +..+|..|+++||++++. +++
T Consensus 77 lSiGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~---~~~~~~~ll~~Lr~~~~~--------~~~ 145 (256)
T cd06546 77 GMLGGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM---SLDGIIRLIDRLRSDFGP--------DFI 145 (256)
T ss_pred EEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC---CHhHHHHHHHHHHHHhCC--------CcE
Confidence 9999997 788888889999999999999999999999999999985 356999999999999863 378
Q ss_pred EEEEecCCcc----ccccCCChhhhh----ccCcEEEeeccccCCCCCCchh--HHhHcCCCCcceeeeccc
Q 046015 173 LVMTSHHLPA----LESVSYPLDSMQ----RNLDWIHVLTFDYYLPTRDNFT--EWLKRGFQAKKLVLGLPY 234 (352)
Q Consensus 173 ls~~~~~~~~----~~~~~~d~~~l~----~~vD~i~~m~yd~~~~~~~~~~--~~~~~g~p~~Kivlglp~ 234 (352)
||+++++..- .....+++.++. +++||+|+|.||.+|....... .|+..++|++||++|+|.
T Consensus 146 lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~~~~~~~~~~~~~~~~~Kv~iGlpa 217 (256)
T cd06546 146 ITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMSSPSDYDAIVAQGWDPERIVIGLLT 217 (256)
T ss_pred EEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCccCHHHHHHHHHcCCCcccEEEEEec
Confidence 9988654311 111236777665 4999999999998765432222 566779999999999986
No 18
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=5.2e-32 Score=239.74 Aligned_cols=191 Identities=12% Similarity=0.115 Sum_probs=138.5
Q ss_pred CCCCCCCCCCCC--ccEEEEeeE-EEeCC----CceEeeCCC-ChHHHHHHHHHHHhcCCCcEEEEEEeCCc-cchhhhc
Q 046015 38 SELPIAEIHSAL--FSNLMCAFA-FINSS----TYNIFINST-SEQFFVNFTNTVKHRNPSVITLLSVWGGA-IFSSMIN 108 (352)
Q Consensus 38 ~~~~~~~~~~~~--~Thi~~~~~-~~~~~----~~~~~~~~~-~~~~~~~~~~~lk~~~~~~kvllsiGg~~-~~~~~~~ 108 (352)
....++++|.+. ||||+++|+ ..+.. ++....... +...+..+. .+|+++|++|||+|||||. ..+.+..
T Consensus 11 ~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~lK~~~p~lKvllSiGG~~~~~~~~~~ 89 (253)
T cd06544 11 NGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVK-SIKAQHPNVKVVISIGGRGVQNNPTPF 89 (253)
T ss_pred CCccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHH-HHHHhCCCcEEEEEeCCCCCCCCcccc
Confidence 345789999988 999999999 33331 223333222 223445564 7999999999999999998 3222333
Q ss_pred Ch----hhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCcccc
Q 046015 109 QS----SNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALE 184 (352)
Q Consensus 109 ~~----~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~ 184 (352)
++ ..|++|++++++++++|||||||||||+|. .++.+|+.|+++||++|++. ++++.+++.+.....
T Consensus 90 ~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~--~d~~~f~~ll~~l~~~l~~~-------~~lt~a~vap~~~~~ 160 (253)
T cd06544 90 DPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP--ADPDTFVECIGQLITELKNN-------GVIKVASIAPSEDAE 160 (253)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC--cCHHHHHHHHHHHHHHhhhc-------CCeEEEEecCCcccc
Confidence 33 445667999999999999999999999985 67999999999999999865 233333333333221
Q ss_pred ccCCChhhhhccCcEEEeeccccCCCCCCchh-----HH--hHcCCCCcceeeecccceeee
Q 046015 185 SVSYPLDSMQRNLDWIHVLTFDYYLPTRDNFT-----EW--LKRGFQAKKLVLGLPYHGYAW 239 (352)
Q Consensus 185 ~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~-----~~--~~~g~p~~Kivlglp~yG~~~ 239 (352)
..+.++.+.+++|+|++|+|++++.+.+... .| ...++|++||++|+|.+++.|
T Consensus 161 -~~~y~~~~~~~~d~id~~~~qfy~~~~~~~~~~~~~~~~~~~~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 161 -QSHYLALYNAYGDYIDYVNYQFYNYGVPTTVAKYVEFYDEVANNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred -ccccHHHHHHhhCceeEEEhhhhCCCCCCCHHHHHHHHHHHHhCCCcccEEEEEecCCCcc
Confidence 2345788899999999999999887654322 22 134799999999999999766
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.97 E-value=9.7e-30 Score=233.96 Aligned_cols=197 Identities=19% Similarity=0.279 Sum_probs=140.9
Q ss_pred cEEEEEecCCCCCC-----CCCCCCCCccEEEEeeEEEeCCCc-eEee------CCCChHHHHHHHHHHHhcCCCcEEEE
Q 046015 28 WIRGGYWHAHSELP-----IAEIHSALFSNLMCAFAFINSSTY-NIFI------NSTSEQFFVNFTNTVKHRNPSVITLL 95 (352)
Q Consensus 28 ~~v~~y~~~~~~~~-----~~~~~~~~~Thi~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~lk~~~~~~kvll 95 (352)
++++|||+.+.... +.+...+.||||+++|+.+++++. .+.+ .......+.+.++.+|++ ++|||+
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVll 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKVLI 78 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccCCCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEEEE
Confidence 57899999853322 122334889999999999987653 2221 122334455555567765 899999
Q ss_pred EEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCC----cchhHHHHHHHHHHHHHhhhhhhcCCcee
Q 046015 96 SVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKC----TNMTKLGTLFDEWRAEVTSESRKSGKSQL 171 (352)
Q Consensus 96 siGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~----~~~~~~~~~l~~lr~~l~~~~~~~~~~~~ 171 (352)
|||||... ..+.+++.|++|++++++++++|+|||||||||+|... +++.+++.++|+||++++. ++
T Consensus 79 SiGG~~~~-~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~~--------~~ 149 (312)
T cd02871 79 SIGGANGH-VDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHYGP--------NF 149 (312)
T ss_pred EEeCCCCc-cccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcCC--------Ce
Confidence 99999721 23667899999999999999999999999999998643 4678999999999999863 48
Q ss_pred EEEEEecCCccc--------cccCC--ChhhhhccCcEEEeeccccCCCCC--Cc-----hh-------HHhHcC-----
Q 046015 172 LLVMTSHHLPAL--------ESVSY--PLDSMQRNLDWIHVLTFDYYLPTR--DN-----FT-------EWLKRG----- 222 (352)
Q Consensus 172 ~ls~~~~~~~~~--------~~~~~--d~~~l~~~vD~i~~m~yd~~~~~~--~~-----~~-------~~~~~g----- 222 (352)
+||+++.+.... ....| .+.++.+++|||++|.||.++.+. +. .. ..+..+
T Consensus 150 ~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (312)
T cd02871 150 ILTMAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGGCDGQSYSQGTADFLVALADMLLTGFPIAG 229 (312)
T ss_pred EEEECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCcccccccCCccchhHHHHHHHHHHHcCCCccC
Confidence 999995533111 11123 356788899999999999876431 10 11 123344
Q ss_pred ------CCCcceeeecccc
Q 046015 223 ------FQAKKLVLGLPYH 235 (352)
Q Consensus 223 ------~p~~Kivlglp~y 235 (352)
+|++||++|+|..
T Consensus 230 ~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 230 NDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred CcccccCChhhEEEeccCC
Confidence 8999999999973
No 20
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.3e-26 Score=198.69 Aligned_cols=277 Identities=12% Similarity=0.196 Sum_probs=206.1
Q ss_pred cEEEEEecCC--CCCCCCCCCCCCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEe--CCc--
Q 046015 28 WIRGGYWHAH--SELPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVW--GGA-- 101 (352)
Q Consensus 28 ~~v~~y~~~~--~~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiG--g~~-- 101 (352)
..+.||.++| .+|.+..+-.+++|||.+.|+.+...|-.+..... .+.-..+++.+|++++++++++-+= .|.
T Consensus 79 ~~vLayVTPWNs~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~-hdid~gwiralRk~~~~l~ivPR~~fd~~~~~ 157 (392)
T KOG2091|consen 79 GTVLAYVTPWNSHGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGK-HDIDPGWIRALRKSGKDLHIVPRFYFDEFTSA 157 (392)
T ss_pred CceEEEecCcCccchhHHHHHhcccceecchheeehhcCcceEEeec-ccCChHHHHHHHHhCCCceeeceehhhhccch
Confidence 3579999994 57999999999999999999999877644333322 1223456778999999999986663 344
Q ss_pred cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEe-ecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCC
Q 046015 102 IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLH-GVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHL 180 (352)
Q Consensus 102 ~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD-~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~ 180 (352)
.+..++.+++.|++..+.++++++++||||+.++ |....+.-.......+++.|-+++++. .++..+++|+.
T Consensus 158 d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~i~d~~al~~v~hl~k~Lhkq-------~l~~iLvvPp~ 230 (392)
T KOG2091|consen 158 DLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADVIADKDALELVEHLGKALHKQ-------ELQAILVVPPV 230 (392)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-------heEEEEEeCCC
Confidence 7888999999999999999999999999999997 332211111123445566666666644 46666677763
Q ss_pred cc--ccccC----CChhhhhccCcEEEeeccccCCCCCCchh---HHhHcC--------CCCcceeeecccceeeeeecC
Q 046015 181 PA--LESVS----YPLDSMQRNLDWIHVLTFDYYLPTRDNFT---EWLKRG--------FQAKKLVLGLPYHGYAWTLVN 243 (352)
Q Consensus 181 ~~--~~~~~----~d~~~l~~~vD~i~~m~yd~~~~~~~~~~---~~~~~g--------~p~~Kivlglp~yG~~~~~~~ 243 (352)
.. ..+.. -+++.|...+|.+.+||||+.+...+... .|+... --+.||.+|+.|||++|.+.+
T Consensus 231 ~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~~~pg~nap~~wi~~~l~~l~~~s~~r~KiLlGlNFYG~d~~~gd 310 (392)
T KOG2091|consen 231 IEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLVQGPGPNAPLEWIRHCLHHLGGSSAKRPKILLGLNFYGNDFNLGD 310 (392)
T ss_pred CcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccccCCCCCCCHHHHHHHHHHhCCccccccceeEeeeccccccccCC
Confidence 22 22211 25778899999999999999875443322 565432 124799999999999996421
Q ss_pred CCCCCCCCCCCCCCCCCCccccHHHHHhhhhcCCCceeEEEeccceeEEEE-----eCCEEEEeCcHHHHHHHHHHHHhc
Q 046015 244 PDENPVGSPATGPAITIDGSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFS-----AKTTWVNFDGVETIRSKVSFAKEK 318 (352)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-----~~~~~i~ydd~~S~~~K~~~~~~~ 318 (352)
..+.|+-.+-..+++... ...+||+++...+.- ++++.|.|++..|+..++++|++.
T Consensus 311 ----------------g~~~IT~~rYL~lLk~~k--~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl~~Ri~lA~~~ 372 (392)
T KOG2091|consen 311 ----------------GGEAITAKRYLQLLKGEK--SVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTSLELRIELAREL 372 (392)
T ss_pred ----------------CCCceeHHHHHHHHhccC--cceeeccccchhheeeeccCCCceEEEecchHhHHHHHHHHHHh
Confidence 124677788888888877 789999999776665 358999999999999999999999
Q ss_pred CCceEEEEeccCC
Q 046015 319 GLLGYHVFQLSND 331 (352)
Q Consensus 319 ~l~Gi~~W~l~~D 331 (352)
|. ||++|++||-
T Consensus 373 gv-gISIWe~GqG 384 (392)
T KOG2091|consen 373 GV-GISIWEYGQG 384 (392)
T ss_pred CC-ceEeeeccCc
Confidence 99 9999999986
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.93 E-value=5.1e-25 Score=197.71 Aligned_cols=193 Identities=12% Similarity=0.107 Sum_probs=137.4
Q ss_pred cEEEEEecCCCC------CCCCCCCCCCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCc
Q 046015 28 WIRGGYWHAHSE------LPIAEIHSALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGA 101 (352)
Q Consensus 28 ~~v~~y~~~~~~------~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~ 101 (352)
++.+|||..+.. ..+.++| ..++.|++....++.++... .........+.++.++++ |+||++||||+.
T Consensus 1 ~~~~~y~~~~~~~~~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~--~~~~~~~~~~~i~~l~~k--G~KVl~sigg~~ 75 (255)
T cd06542 1 PISFGYFEVWDDKGASLQESLLNLP-DSVDMVSLFAANINLDAATA--VQFLLTNKETYIRPLQAK--GTKVLLSILGNH 75 (255)
T ss_pred CeEEEEEEecCCcCcccccccccCC-CcceEEEEcccccCcccccc--hhhhhHHHHHHHHHHhhC--CCEEEEEECCCC
Confidence 367899988654 4566666 56788887433333321100 011123344455556555 999999999987
Q ss_pred ---cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC------CcchhHHHHHHHHHHHHHhhhhhhcCCceeE
Q 046015 102 ---IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK------CTNMTKLGTLFDEWRAEVTSESRKSGKSQLL 172 (352)
Q Consensus 102 ---~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~------~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ 172 (352)
.+ ....+++.|++|++++++++++|||||||||||++.. +.+.++|..|+++||+.++.. +++
T Consensus 76 ~~~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~~~~~-------~kl 147 (255)
T cd06542 76 LGAGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKYMGPT-------DKL 147 (255)
T ss_pred CCCCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHHhCcC-------CcE
Confidence 33 2456778899999999999999999999999998864 237789999999999999752 468
Q ss_pred EEEEecCCccccccCCChhhhhccCcEEEeeccccCCCCCCchhHHhHcCCCCcceeeeccccee
Q 046015 173 LVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNFTEWLKRGFQAKKLVLGLPYHGY 237 (352)
Q Consensus 173 ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~~~~~~g~p~~Kivlglp~yG~ 237 (352)
|++++++..... +.+++.+++||+++|+|+..+........-...|+|++|+++|+++++.
T Consensus 148 lt~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~~~~~~~~~~~~~g~~~~k~i~~~~~~~~ 208 (255)
T cd06542 148 LTIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSSSSTQRNWNTNSPKIPPEKMVYTESFEEE 208 (255)
T ss_pred EEEEecCCchhc----CHHHHHHhCCEEEeeccCCCCccCCcccccccCCCCHHHceeeeeeecc
Confidence 999877543221 6789999999999999986543322111122458999999999998763
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.91 E-value=6.9e-23 Score=184.04 Aligned_cols=190 Identities=15% Similarity=0.151 Sum_probs=128.3
Q ss_pred EEEEecCCC--CCCCCCCCCCCccEEEEeeEEEeCCCce--EeeCCCC-------hHHHHHHHHHHHhcCCCcEEEEEEe
Q 046015 30 RGGYWHAHS--ELPIAEIHSALFSNLMCAFAFINSSTYN--IFINSTS-------EQFFVNFTNTVKHRNPSVITLLSVW 98 (352)
Q Consensus 30 v~~y~~~~~--~~~~~~~~~~~~Thi~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~lk~~~~~~kvllsiG 98 (352)
|+.||.... ...-+-.+...++-|+++|+..-++++. +.+.... -..+...++.++++ ++|||||||
T Consensus 3 v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~--G~KVlLSIG 80 (280)
T cd02877 3 IAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSK--GKKVLLSIG 80 (280)
T ss_pred eEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHC--CCEEEEEcc
Confidence 677886632 2222333445689999999987765332 3333221 12444555555554 999999999
Q ss_pred CCc-cchhhhcChhhHHHHHHHHHHHH------------HHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhh
Q 046015 99 GGA-IFSSMINQSSNRRSFIKSSIEMA------------RFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRK 165 (352)
Q Consensus 99 g~~-~~~~~~~~~~~r~~f~~~i~~~l------------~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~ 165 (352)
||. .+.. .+++.|++|++++.++. .+++|||||||||+|.. .+|..|+++||+.++...
T Consensus 81 G~~~~~~~--~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~----~~~~~l~~~LR~~~~~~~-- 152 (280)
T cd02877 81 GAGGSYSL--SSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP----ENYDALAKRLRSLFASDP-- 152 (280)
T ss_pred CCCCCcCC--CCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc----cCHHHHHHHHHHHhhccc--
Confidence 998 3332 57889999999998765 25779999999998863 689999999999997642
Q ss_pred cCCceeEEEEEecCCccccccCCChhhhh-ccCcEEEeeccccCCCCC-----Cchh----HHhHcCCCC---cceeeec
Q 046015 166 SGKSQLLLVMTSHHLPALESVSYPLDSMQ-RNLDWIHVLTFDYYLPTR-----DNFT----EWLKRGFQA---KKLVLGL 232 (352)
Q Consensus 166 ~~~~~~~ls~~~~~~~~~~~~~~d~~~l~-~~vD~i~~m~yd~~~~~~-----~~~~----~~~~~g~p~---~Kivlgl 232 (352)
..+++||+++++. . ...+....+. .++|+|++|.||..+-.. .... .|.. .++. .||++|+
T Consensus 153 --~~~~~LTaAPq~~-~--~d~~~~~~i~~~~~D~i~vqfYn~~~c~~~~~~~~~~~~~~~~w~~-~~~~~~~~kv~lGl 226 (280)
T cd02877 153 --SKKYYLTAAPQCP-Y--PDASLGDAIATGLFDFIFVQFYNNPCCSYASGNASGFNFNWDTWTS-WAKATSNAKVFLGL 226 (280)
T ss_pred --CCceEEEeccccC-C--cchhHHHHHccCccCEEEEEEecCccccccccccchhhhHHHHHHH-hcccCCCceEEEec
Confidence 1358999996653 1 1123344555 489999999999754210 0011 5654 3555 8999999
Q ss_pred ccc
Q 046015 233 PYH 235 (352)
Q Consensus 233 p~y 235 (352)
|..
T Consensus 227 pas 229 (280)
T cd02877 227 PAS 229 (280)
T ss_pred ccC
Confidence 873
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.88 E-value=4.4e-21 Score=173.56 Aligned_cols=150 Identities=12% Similarity=0.109 Sum_probs=114.7
Q ss_pred CCCccEEEEeeEEEeCCCceEeeCCC---C-hHHHHHHHHHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHH
Q 046015 47 SALFSNLMCAFAFINSSTYNIFINST---S-EQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIE 122 (352)
Q Consensus 47 ~~~~Thi~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~ 122 (352)
...|+|++++|+....++ +..+... + .......++.+|++ |.||++|+|||.. ..+..+...|++|++++.+
T Consensus 23 ~~g~~~v~lAFi~~~~~~-~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g-~~~~~~~~~~~~~~~a~~~ 98 (294)
T cd06543 23 ATGVKAFTLAFIVASGGC-KPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASG-TPLATSCTSADQLAAAYQK 98 (294)
T ss_pred HcCCCEEEEEEEEcCCCC-cccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCC-CccccCcccHHHHHHHHHH
Confidence 468999999999887543 5554432 1 23344444578877 7999999999982 1133367899999999999
Q ss_pred HHHHcCCCeEEEeecCCCCCcch---hHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccc-cCCChhhhhc---
Q 046015 123 MARFYRFHGLDLHGVLPDKCTNM---TKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALES-VSYPLDSMQR--- 195 (352)
Q Consensus 123 ~l~~~~~DGidiD~e~~~~~~~~---~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~-~~~d~~~l~~--- 195 (352)
++++|+|||||||||++.. +++ .++...|++|+++++ ++.|++++|..+.... .++++-+.++
T Consensus 99 ~i~~y~~dgiDfDiE~~~~-~d~~~~~~~~~al~~Lq~~~p---------~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~G 168 (294)
T cd06543 99 VIDAYGLTHLDFDIEGGAL-TDTAAIDRRAQALALLQKEYP---------DLKISFTLPVLPTGLTPDGLNVLEAAAANG 168 (294)
T ss_pred HHHHhCCCeEEEeccCCcc-ccchhHHHHHHHHHHHHHHCC---------CcEEEEecCCCCCCCChhHHHHHHHHHHcC
Confidence 9999999999999999873 454 788888888888774 4789999987665444 3456777777
Q ss_pred -cCcEEEeeccccCCC
Q 046015 196 -NLDWIHVLTFDYYLP 210 (352)
Q Consensus 196 -~vD~i~~m~yd~~~~ 210 (352)
.+|+||||+||+++.
T Consensus 169 v~~d~VNiMtmDyg~~ 184 (294)
T cd06543 169 VDLDTVNIMTMDYGSS 184 (294)
T ss_pred CCcceeeeeeecCCCC
Confidence 899999999999875
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.79 E-value=3.4e-18 Score=144.82 Aligned_cols=201 Identities=16% Similarity=0.239 Sum_probs=128.8
Q ss_pred cCCCCcEEEEEecCCCC--------CCCCCCCC----CCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCC
Q 046015 23 TSSPNWIRGGYWHAHSE--------LPIAEIHS----ALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPS 90 (352)
Q Consensus 23 ~~~~~~~v~~y~~~~~~--------~~~~~~~~----~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~ 90 (352)
...++++.+|||+.+.+ -+..++.. +.++.+-+.|..-..+=.+...-...+..++.-+..|.++ |
T Consensus 21 ~~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~g~iptf~P~~~~daeFr~~v~aLnae--G 98 (332)
T COG3469 21 PDISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGAGDIPTFKPYNDPDAEFRAQVGALNAE--G 98 (332)
T ss_pred cccccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecCCCCcccCcCCCCHHHHHHHHHHhhcc--C
Confidence 34566799999998422 11111111 2344444444433221111222223445666666666666 8
Q ss_pred cEEEEEEeCCc-cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC--CcchhHHHHHHHHHHHHHhhhhhhcC
Q 046015 91 VITLLSVWGGA-IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK--CTNMTKLGTLFDEWRAEVTSESRKSG 167 (352)
Q Consensus 91 ~kvllsiGg~~-~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~~l~~lr~~l~~~~~~~~ 167 (352)
.-|++|+||.. ...--. ..-+.|+++|++++++|||||+|||.|.... .+++.-..+.+|.+|+..+..++
T Consensus 99 kavllsLGGAdghIeL~~---~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~Gk--- 172 (332)
T COG3469 99 KAVLLSLGGADGHIELKA---GQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQGK--- 172 (332)
T ss_pred cEEEEEccCccceEEecc---chHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcCC---
Confidence 89999999987 333222 2357899999999999999999999996532 24455678999999999988765
Q ss_pred CceeEEEEEecCCcccccc-CC--ChhhhhccCcEEEeeccccCCC--CCCchh---------------HH----hHc--
Q 046015 168 KSQLLLVMTSHHLPALESV-SY--PLDSMQRNLDWIHVLTFDYYLP--TRDNFT---------------EW----LKR-- 221 (352)
Q Consensus 168 ~~~~~ls~~~~~~~~~~~~-~~--d~~~l~~~vD~i~~m~yd~~~~--~~~~~~---------------~~----~~~-- 221 (352)
++.|||++..+ ..... .| -+.++.++.|+|+.+-|+..|. |..+.. ++ +..
T Consensus 173 --~f~itMAPEfP-Yl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q~nd~~kesfly~~~~slanGt 249 (332)
T COG3469 173 --NFFITMAPEFP-YLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQNNDMVKESFLYYLTFSLANGT 249 (332)
T ss_pred --ceEEEecCCCc-eecCCcccchHHHHHhhHHhhhhHHHhcCCCCCCCcCccccccccccHHHHHhHHHHhhhhhhcCc
Confidence 69999995432 22221 12 2678899999999999997653 443332 11 111
Q ss_pred ----CCCCcceeeeccc
Q 046015 222 ----GFQAKKLVLGLPY 234 (352)
Q Consensus 222 ----g~p~~Kivlglp~ 234 (352)
.+|.+|+++|+|.
T Consensus 250 r~f~~ipa~k~aiGLPs 266 (332)
T COG3469 250 RGFEKIPADKFAIGLPS 266 (332)
T ss_pred ccceecccceeEEecCC
Confidence 2789999999987
No 25
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=99.49 E-value=2.7e-12 Score=115.01 Aligned_cols=196 Identities=15% Similarity=0.194 Sum_probs=122.3
Q ss_pred CCCCcEEEEEecCC----CCCCCCCCCCCCccEEEEeeEEEeCCCceEeeC--CC----------ChHHHHHHHHHHHhc
Q 046015 24 SSPNWIRGGYWHAH----SELPIAEIHSALFSNLMCAFAFINSSTYNIFIN--ST----------SEQFFVNFTNTVKHR 87 (352)
Q Consensus 24 ~~~~~~v~~y~~~~----~~~~~~~~~~~~~Thi~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~~lk~~ 87 (352)
.+...-+.+||..+ +.....-.....+..++++|+.--+.+++..++ +. .-..+..-++.++.+
T Consensus 23 ~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~CTqi~~di~~CQS~ 102 (568)
T KOG4701|consen 23 LTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKKCTQIETDIQVCQSN 102 (568)
T ss_pred cccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCccccccccccchhhhHHHHHHhc
Confidence 34445678999773 222233344456788888887655544443332 11 112334444445544
Q ss_pred CCCcEEEEEEeCCc-cchhhhcChhhHHHHHHHHHHHHHH----------cCCCeEEEeecCCCCCcchhHHHHHHHHHH
Q 046015 88 NPSVITLLSVWGGA-IFSSMINQSSNRRSFIKSSIEMARF----------YRFHGLDLHGVLPDKCTNMTKLGTLFDEWR 156 (352)
Q Consensus 88 ~~~~kvllsiGg~~-~~~~~~~~~~~r~~f~~~i~~~l~~----------~~~DGidiD~e~~~~~~~~~~~~~~l~~lr 156 (352)
|+||||++||.. .+. +.|.+..+.|++.+-+..-. --+||+|+|+|. .....|.+|.++||
T Consensus 103 --GiKVlLSLGG~~GnYs--~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~----g~~~~ysaLA~~L~ 174 (568)
T KOG4701|consen 103 --GIKVLLSLGGYNGNYS--LNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEK----GTNTAYSALAKRLL 174 (568)
T ss_pred --CeEEEEeccCccccee--eccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeec----CCcchHHHHHHHHH
Confidence 999999999976 332 34566778888888765532 237999999994 34578899999999
Q ss_pred HHHhhhhhhcCCceeEEEEEecCCccccccCCChhhh-hccCcEEEeeccccC------CCCCCchhHHhH--cCCCCcc
Q 046015 157 AEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSM-QRNLDWIHVLTFDYY------LPTRDNFTEWLK--RGFQAKK 227 (352)
Q Consensus 157 ~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l-~~~vD~i~~m~yd~~------~~~~~~~~~~~~--~g~p~~K 227 (352)
+.|...++ ++.|+.++.++.-. +.--..| .+..||+.|+.|+.. |........|+. ..+.++|
T Consensus 175 ~~Fa~~~r-----~yYLsaAPQCP~PD---~~~G~aL~~~~fDf~~IQFYNN~~CS~SsG~~Q~~fDsW~~ya~~~a~nK 246 (568)
T KOG4701|consen 175 EIFASDPR-----RYYLSAAPQCPVPD---HTLGKALSENSFDFLSIQFYNNSTCSGSSGSRQSTFDAWVEYAEDSAYNK 246 (568)
T ss_pred HHHccCCc-----eEEeccCCCCCCCc---hhhhhhhhccccceEEEEeecCCCcccccCcccccHHHHHHHHhhhcccc
Confidence 99997754 58899886654111 1111222 246899999999862 111111114543 3567777
Q ss_pred ---eeeecccc
Q 046015 228 ---LVLGLPYH 235 (352)
Q Consensus 228 ---ivlglp~y 235 (352)
+.||+|..
T Consensus 247 n~~lFLGLPg~ 257 (568)
T KOG4701|consen 247 NTSLFLGLPGH 257 (568)
T ss_pred cceEEeeccCC
Confidence 99999873
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.40 E-value=1.3e-06 Score=80.98 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=99.2
Q ss_pred HHHHHHhcCCCcEEEEEEeC-C---c-cchhhhcC-hhhHHHHHHHHHHHHHHcCCCeEEEeecCCC-CCcchhHHHHHH
Q 046015 80 FTNTVKHRNPSVITLLSVWG-G---A-IFSSMINQ-SSNRRSFIKSSIEMARFYRFHGLDLHGVLPD-KCTNMTKLGTLF 152 (352)
Q Consensus 80 ~~~~lk~~~~~~kvllsiGg-~---~-~~~~~~~~-~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~-~~~~~~~~~~~l 152 (352)
+++.+|++ |+||+-.|-- | . ....++.+ ++.+..+|+.++++++.|||||+.||+|... ..++++++..|+
T Consensus 51 ~idaAHkn--GV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~~~~~~~~l~~F~ 128 (339)
T cd06547 51 WINAAHRN--GVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELGDAEKAKRLIAFL 128 (339)
T ss_pred HHHHHHhc--CCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCCcHHHHHHHHHHH
Confidence 55567776 9999977741 2 1 56777877 8999999999999999999999999999877 568899999999
Q ss_pred HHHHHHHhhhhhhcCCceeEEEE-Eec--CCccccccC---CChhhhhccCcEEEeeccccCCCCCCchh-----HHhHc
Q 046015 153 DEWRAEVTSESRKSGKSQLLLVM-TSH--HLPALESVS---YPLDSMQRNLDWIHVLTFDYYLPTRDNFT-----EWLKR 221 (352)
Q Consensus 153 ~~lr~~l~~~~~~~~~~~~~ls~-~~~--~~~~~~~~~---~d~~~l~~~vD~i~~m~yd~~~~~~~~~~-----~~~~~ 221 (352)
++|++++++. .++..+.- ..- .+.-.++.. .+.+ ..+.+|-+.+ .|. |..... .....
T Consensus 129 ~~L~~~~~~~-----~~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~-ff~~~D~~Fl-NY~----W~~~~l~~s~~~a~~~ 197 (339)
T cd06547 129 RYLKAKLHEN-----VPGSLVIWYDSMTEDGKLSWQNELNSKNKP-FFDVCDGIFL-NYW----WTEESLERSVQLAEGL 197 (339)
T ss_pred HHHHHHHhhc-----CCCcEEEEEecCCCCCccchhhhhhHHHHH-HHhhhcceeE-ecC----CCcchHHHHHHHHHHc
Confidence 9999999975 22333322 211 111111111 1222 2255674422 343 443221 24456
Q ss_pred CCCCcceeeecccceeee
Q 046015 222 GFQAKKLVLGLPYHGYAW 239 (352)
Q Consensus 222 g~p~~Kivlglp~yG~~~ 239 (352)
|..+.+|.+|+=..|+..
T Consensus 198 g~~~~dvy~GiDv~grg~ 215 (339)
T cd06547 198 GRSPYDVYVGVDVWGRGT 215 (339)
T ss_pred CCCHhHEEEEEEEEcCCc
Confidence 788889999998887765
No 27
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.03 E-value=4.8e-05 Score=70.06 Aligned_cols=124 Identities=12% Similarity=0.161 Sum_probs=81.7
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEe-ecCCC-----------------------CCcc-------hhHHHHHHHHHHH
Q 046015 109 QSSNRRSFIKSSIEMARFYRFHGLDLH-GVLPD-----------------------KCTN-------MTKLGTLFDEWRA 157 (352)
Q Consensus 109 ~~~~r~~f~~~i~~~l~~~~~DGidiD-~e~~~-----------------------~~~~-------~~~~~~~l~~lr~ 157 (352)
.++.|+-.++-+.+++++|++|||++| +-+|. .+.+ +++...|++++++
T Consensus 135 ~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~ 214 (311)
T PF02638_consen 135 HPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYD 214 (311)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 567788888888899999999999999 44432 1233 5688999999999
Q ss_pred HHhhhhhhcCCceeEEEEEecCCcc--ccccCCChhhhh--ccCcEEEeecccc-CCCCCCchh----HHhHcCCC-Ccc
Q 046015 158 EVTSESRKSGKSQLLLVMTSHHLPA--LESVSYPLDSMQ--RNLDWIHVLTFDY-YLPTRDNFT----EWLKRGFQ-AKK 227 (352)
Q Consensus 158 ~l~~~~~~~~~~~~~ls~~~~~~~~--~~~~~~d~~~l~--~~vD~i~~m~yd~-~~~~~~~~~----~~~~~g~p-~~K 227 (352)
++++. +|...+++++.+... .....-|..... .++|++..|.|-. .+....... .|...-.+ .-+
T Consensus 215 ~ik~~-----kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~~~~~~~~~~~~~~~w~~~~~~~~v~ 289 (311)
T PF02638_consen 215 AIKAI-----KPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSDFSHFTAPYEQLAKWWAKQVKPTNVH 289 (311)
T ss_pred HHHHh-----CCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccccchhHHHHHHHHHHHHHhhcCCCce
Confidence 99987 567788887543321 111112444443 5899999999964 222111111 44443333 348
Q ss_pred eeeeccccee
Q 046015 228 LVLGLPYHGY 237 (352)
Q Consensus 228 ivlglp~yG~ 237 (352)
|.+|+.+|-.
T Consensus 290 ly~G~~~y~~ 299 (311)
T PF02638_consen 290 LYIGLALYKV 299 (311)
T ss_pred EEEccCcCCC
Confidence 9999988753
No 28
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=97.87 E-value=0.00014 Score=60.31 Aligned_cols=112 Identities=10% Similarity=0.075 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHHHHHH-cCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCC
Q 046015 110 SSNRRSFIKSSIEMARF-YRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSY 188 (352)
Q Consensus 110 ~~~r~~f~~~i~~~l~~-~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~ 188 (352)
++..++..+.+.++-.. +..-||.||+..+. .....|..|+++||.++... +.||++.=+...... -
T Consensus 23 ~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t--~~L~~Y~~fL~~LR~~LP~~--------~~LSIT~L~dW~~~~--~ 90 (181)
T PF11340_consen 23 EQVLARILQLLQRWQAAGNNVAGIQIDFDAAT--SRLPAYAQFLQQLRQRLPPD--------YRLSITALPDWLSSP--D 90 (181)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEecCccc--cchHHHHHHHHHHHHhCCCC--------ceEeeEEehhhhcCc--h
Confidence 45555666666566544 35789999999765 57889999999999999864 678887543322212 1
Q ss_pred ChhhhhccCcEEEeeccccCCCCCCchh-HHhHc--CCCCcceeeecccce
Q 046015 189 PLDSMQRNLDWIHVLTFDYYLPTRDNFT-EWLKR--GFQAKKLVLGLPYHG 236 (352)
Q Consensus 189 d~~~l~~~vD~i~~m~yd~~~~~~~~~~-~~~~~--g~p~~Kivlglp~yG 236 (352)
.++.+.+.||-+++|+| .|..+.... .|+.. ++. --.-+|+|.||
T Consensus 91 ~L~~L~~~VDE~VlQ~y--qGl~d~~~~~~yl~~l~~l~-~PFriaLp~yG 138 (181)
T PF11340_consen 91 WLNALPGVVDELVLQVY--QGLFDPPNYARYLPRLARLT-LPFRIALPQYG 138 (181)
T ss_pred hhhhHhhcCCeeEEEee--cCCCCHHHHHHHHHHHhcCC-CCeEEecCcCC
Confidence 37789999999999999 343333322 44432 222 33779999999
No 29
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.72 E-value=0.00015 Score=66.69 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=87.1
Q ss_pred HHHHHHhcCCCcEEEEEE----eCCc-cchhhhc-ChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCC-cchhHHHHHH
Q 046015 80 FTNTVKHRNPSVITLLSV----WGGA-IFSSMIN-QSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKC-TNMTKLGTLF 152 (352)
Q Consensus 80 ~~~~lk~~~~~~kvllsi----Gg~~-~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~-~~~~~~~~~l 152 (352)
+++++|++ |+|||=.| ++.. ....++. ++.....+++.++++++-|||||.-|++|.+... ...+.+..|+
T Consensus 47 widaAHrn--GV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~~~~~~~~l~~F~ 124 (311)
T PF03644_consen 47 WIDAAHRN--GVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLSGPEDAENLIDFL 124 (311)
T ss_dssp HHHHHHHT--T--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESSTTGGGHHHHHHHH
T ss_pred hHHHHHhc--CceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCCchhHHHHHHHHH
Confidence 66677777 99998555 2222 6677777 7888889999999999999999999999987654 6889999999
Q ss_pred HHHHHHHhhhhhhcCCceeEEEEEec---CCccccccCCCh--hhhhccCcEEEeeccccCCCCCCchh-----HHhHcC
Q 046015 153 DEWRAEVTSESRKSGKSQLLLVMTSH---HLPALESVSYPL--DSMQRNLDWIHVLTFDYYLPTRDNFT-----EWLKRG 222 (352)
Q Consensus 153 ~~lr~~l~~~~~~~~~~~~~ls~~~~---~~~~~~~~~~d~--~~l~~~vD~i~~m~yd~~~~~~~~~~-----~~~~~g 222 (352)
++|+++.++ . ++..|.---. ...-.++..+.- ....+.+|-+.+ .|. |.+... .....+
T Consensus 125 ~~l~~~~~~-~-----~~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFl-NY~----W~~~~l~~s~~~A~~~~ 193 (311)
T PF03644_consen 125 KYLRKEAHE-N-----PGSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFL-NYN----WNPDSLESSVANAKSRG 193 (311)
T ss_dssp HHHHHHHHH-T------T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE--S------SHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhc-C-----CCcEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeE-ecC----CCcccHHHHHHHHHHcC
Confidence 999999987 2 1233433211 111122222111 112355676543 332 444322 455668
Q ss_pred CCCcceeeecccceee
Q 046015 223 FQAKKLVLGLPYHGYA 238 (352)
Q Consensus 223 ~p~~Kivlglp~yG~~ 238 (352)
.+|.+|.+|+=..|+.
T Consensus 194 ~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 194 RDPYDVYAGIDVFGRG 209 (311)
T ss_dssp S-GGGEEEEEEHHHHT
T ss_pred CCHHHEEEEEEEEcCC
Confidence 8999999999999886
No 30
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.43 E-value=0.032 Score=51.18 Aligned_cols=87 Identities=10% Similarity=0.165 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCCCeEEEee-cCCCC----------C--c--chhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecC
Q 046015 115 SFIKSSIEMARFYRFHGLDLHG-VLPDK----------C--T--NMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHH 179 (352)
Q Consensus 115 ~f~~~i~~~l~~~~~DGidiD~-e~~~~----------~--~--~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~ 179 (352)
...-.|+..+.+.|||.|.+|+ .+|.. . + -.+....||+..|++++.. +..||+.+.+
T Consensus 124 ~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~-------~v~vSaDVfG 196 (316)
T PF13200_consen 124 DYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPY-------GVPVSADVFG 196 (316)
T ss_pred HHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHc-------CCCEEEEecc
Confidence 4555688888889999999996 67751 1 1 2357889999999999876 3579998875
Q ss_pred Ccccc----ccCCChhhhhccCcEEEeeccccC
Q 046015 180 LPALE----SVSYPLDSMQRNLDWIHVLTFDYY 208 (352)
Q Consensus 180 ~~~~~----~~~~d~~~l~~~vD~i~~m~yd~~ 208 (352)
..... ..+-++..|+++||+|.-|.|--|
T Consensus 197 ~~~~~~~~~~iGQ~~~~~a~~vD~IsPMiYPSh 229 (316)
T PF13200_consen 197 YVAWSPDDMGIGQDFEKIAEYVDYISPMIYPSH 229 (316)
T ss_pred cccccCCCCCcCCCHHHHhhhCCEEEecccccc
Confidence 43333 334689999999999999999543
No 31
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=95.43 E-value=0.23 Score=46.51 Aligned_cols=146 Identities=13% Similarity=0.130 Sum_probs=97.0
Q ss_pred HHHHhcCCCcEEEEEE-eCCc----cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHH
Q 046015 82 NTVKHRNPSVITLLSV-WGGA----IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWR 156 (352)
Q Consensus 82 ~~lk~~~~~~kvllsi-Gg~~----~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr 156 (352)
+.++++ |++|+=.+ --|. .-..+++++++.+.-++.++++.+-.||||--|+.|...+.....++..|++.|.
T Consensus 118 n~AHrH--GV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~~~~i~~l~~F~~~Lt 195 (526)
T KOG2331|consen 118 NTAHRH--GVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKIDLAKIPNLIQFVSHLT 195 (526)
T ss_pred chhhhc--CceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccChhhCccHHHHHHHHH
Confidence 456666 99998543 3444 5677788889999999999999999999999999997765566778999999999
Q ss_pred HHHhhhhhhcCCceeEEEEEec--CCccccccCCC--hhhhhccCcEEEeeccccCCCCCCchh--HHhHcCCCCcceee
Q 046015 157 AEVTSESRKSGKSQLLLVMTSH--HLPALESVSYP--LDSMQRNLDWIHVLTFDYYLPTRDNFT--EWLKRGFQAKKLVL 230 (352)
Q Consensus 157 ~~l~~~~~~~~~~~~~ls~~~~--~~~~~~~~~~d--~~~l~~~vD~i~~m~yd~~~~~~~~~~--~~~~~g~p~~Kivl 230 (352)
+.+++.. ..++.+....- .+.-.|++..+ -...-+.+|-+ +|.|+ |..... ..-..|-.+.++.+
T Consensus 196 ~~~~~~~----p~~~ViWYDSV~~~G~L~WQ~eLne~N~~Ffd~cdg~-~~NY~----Wke~~l~rsa~~~~~~r~~v~~ 266 (526)
T KOG2331|consen 196 KVLHSSV----PGGLVIWYDSVTDDGQLHWQNELNEMNRKFFDACDGI-FMNYN----WKEKHLERSAEQAGDRRHRVFM 266 (526)
T ss_pred HHHhhcC----CCceEEEEeeeeecCeeehhhhhhhhcchhhhhccee-eeecc----cccchHHHHHHhhhhhhhceEE
Confidence 9998652 23444544322 11122222111 01223456665 45665 555433 23334556778999
Q ss_pred ecccceee
Q 046015 231 GLPYHGYA 238 (352)
Q Consensus 231 glp~yG~~ 238 (352)
|+-.+||.
T Consensus 267 GiDVf~Rg 274 (526)
T KOG2331|consen 267 GIDVFGRG 274 (526)
T ss_pred EeEEEecc
Confidence 99998874
No 32
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=93.29 E-value=0.33 Score=38.71 Aligned_cols=61 Identities=10% Similarity=0.006 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEeC-Cc----------------------------cchhhhcChhhHHHHHHHHHHHH
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSVWG-GA----------------------------IFSSMINQSSNRRSFIKSSIEMA 124 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiGg-~~----------------------------~~~~~~~~~~~r~~f~~~i~~~l 124 (352)
.+.+.++++++|++ |+||++-+.. +. .+...--|...++-++..|..++
T Consensus 43 ~Dllge~v~a~h~~--Girv~ay~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~ 120 (132)
T PF14871_consen 43 RDLLGEQVEACHER--GIRVPAYFDFSWDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREIL 120 (132)
T ss_pred cCHHHHHHHHHHHC--CCEEEEEEeeecChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHH
Confidence 35688898888888 8998854421 22 12334445667888889999999
Q ss_pred HHcCCCeEEEee
Q 046015 125 RFYRFHGLDLHG 136 (352)
Q Consensus 125 ~~~~~DGidiD~ 136 (352)
++|++|||-+||
T Consensus 121 ~~y~~DGiF~D~ 132 (132)
T PF14871_consen 121 DRYDVDGIFFDI 132 (132)
T ss_pred HcCCCCEEEecC
Confidence 999999999986
No 33
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=91.62 E-value=9.5 Score=34.45 Aligned_cols=182 Identities=18% Similarity=0.212 Sum_probs=99.0
Q ss_pred CccEEEE-eeEEEeCCCce--EeeCCCC----hHHHHHHHHHHHhcCCCcEEEEEEe--CCc------------------
Q 046015 49 LFSNLMC-AFAFINSSTYN--IFINSTS----EQFFVNFTNTVKHRNPSVITLLSVW--GGA------------------ 101 (352)
Q Consensus 49 ~~Thi~~-~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~lk~~~~~~kvllsiG--g~~------------------ 101 (352)
..++|++ +|...+++|.. +.+++.. ...+....=.++.+. ++||..... +|.
T Consensus 30 ~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~-~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~~ 108 (294)
T PF14883_consen 30 GINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRA-GVKVYAWMPVLAFDLPKVKRADEVRTDRPDPD 108 (294)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhh-CCEEEEeeehhhccCCCcchhhhccccCCCCC
Confidence 4677777 44445555422 4555553 334444432455443 788874443 222
Q ss_pred cchhh-hcChhhHHHHHHHHHHHHHHc-CCCeEEEe-------ecCCCCC------cchhHHHHHHHHHHHHHhhhhhhc
Q 046015 102 IFSSM-INQSSNRRSFIKSSIEMARFY-RFHGLDLH-------GVLPDKC------TNMTKLGTLFDEWRAEVTSESRKS 166 (352)
Q Consensus 102 ~~~~~-~~~~~~r~~f~~~i~~~l~~~-~~DGidiD-------~e~~~~~------~~~~~~~~~l~~lr~~l~~~~~~~ 166 (352)
...++ .-+++ -.+.|.+|..=|-+| .||||-|+ +|.+... ...+.++.|..+|++..+..
T Consensus 109 ~y~RLSPf~p~-~r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li~ft~eL~~~v~~~---- 183 (294)
T PF14883_consen 109 GYRRLSPFDPE-ARQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALIDFTMELAAAVRRY---- 183 (294)
T ss_pred CceecCCCCHH-HHHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHHHHHHHHHHHHHHh----
Confidence 00111 00223 335678888888888 79999883 3422111 22357889999999998876
Q ss_pred CCceeEEEEEecCCcccccc-----CCChhhhhccCcEEEeeccccCCCCCCchhHHhH--------cCCCCcceeeecc
Q 046015 167 GKSQLLLVMTSHHLPALESV-----SYPLDSMQRNLDWIHVLTFDYYLPTRDNFTEWLK--------RGFQAKKLVLGLP 233 (352)
Q Consensus 167 ~~~~~~ls~~~~~~~~~~~~-----~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~~~~~--------~g~p~~Kivlglp 233 (352)
++.+...--+.+.+-..+. .-++....+..||..+|+.-+...-. ....|+. ...+.+|+|+-+.
T Consensus 184 -rp~lkTARNiya~pvl~P~se~WfAQnl~~fl~~YD~taimAMPymE~~~-~~~~WL~~Lv~~v~~~p~~l~KtvFELQ 261 (294)
T PF14883_consen 184 -RPDLKTARNIYAEPVLNPESEAWFAQNLDDFLKAYDYTAIMAMPYMEQAE-DPEQWLAQLVDAVAARPGGLDKTVFELQ 261 (294)
T ss_pred -CccchhhhcccccccCCcchhhHHHHhHHHHHHhCCeeheeccchhcccc-CHHHHHHHHHHHHHhcCCcccceEEEEe
Confidence 2322222122221111111 13567778888999999877654433 2334432 2345689999887
Q ss_pred cceeeee
Q 046015 234 YHGYAWT 240 (352)
Q Consensus 234 ~yG~~~~ 240 (352)
. ++|+
T Consensus 262 a--~dwr 266 (294)
T PF14883_consen 262 A--VDWR 266 (294)
T ss_pred c--cCCc
Confidence 6 5564
No 34
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=90.43 E-value=13 Score=33.64 Aligned_cols=135 Identities=10% Similarity=0.078 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeC---Cc---------cchhhhcCh--hhHHHHHHHHHHHHHHcCCCeEEEeecC
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVWG---GA---------IFSSMINQS--SNRRSFIKSSIEMARFYRFHGLDLHGVL 138 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGg---~~---------~~~~~~~~~--~~r~~f~~~i~~~l~~~~~DGidiD~e~ 138 (352)
+-.....+.++++ +.|.|||+-+-= |. .|..+--+. ...-.+.+.+++-+++. ||++||-+
T Consensus 102 D~~k~ieiakRAk--~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~e---Gi~pdmVQ 176 (403)
T COG3867 102 DLKKAIEIAKRAK--NLGMKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKE---GILPDMVQ 176 (403)
T ss_pred hHHHHHHHHHHHH--hcCcEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHc---CCCccceE
Confidence 3344444544444 459999988743 22 233322111 11113556666666664 67888865
Q ss_pred CCCC---------cchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCChhhhhc-cCcEEEe-ecccc
Q 046015 139 PDKC---------TNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQR-NLDWIHV-LTFDY 207 (352)
Q Consensus 139 ~~~~---------~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~~-~vD~i~~-m~yd~ 207 (352)
.+.+ .+..+|..+.+.+.+..++.... .+...+.+.+..+......+.-..+|.+ -|||=++ ++|
T Consensus 177 VGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev--~p~ikv~lHla~g~~n~~y~~~fd~ltk~nvdfDVig~Sy-- 252 (403)
T COG3867 177 VGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREV--SPTIKVALHLAEGENNSLYRWIFDELTKRNVDFDVIGSSY-- 252 (403)
T ss_pred eccccCCceeccCCCCcChHHHHHHHHHHhhhhhhc--CCCceEEEEecCCCCCchhhHHHHHHHHcCCCceEEeeec--
Confidence 4421 22225555555555444433111 2334444444333222222223456665 4665333 333
Q ss_pred CCCCCCchh
Q 046015 208 YLPTRDNFT 216 (352)
Q Consensus 208 ~~~~~~~~~ 216 (352)
+.-|.....
T Consensus 253 YpyWhgtl~ 261 (403)
T COG3867 253 YPYWHGTLN 261 (403)
T ss_pred cccccCcHH
Confidence 222555443
No 35
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.69 E-value=4.1 Score=41.98 Aligned_cols=88 Identities=15% Similarity=0.248 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeC------------Cc----------------cchh---hhcChhhHHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVWG------------GA----------------IFSS---MINQSSNRRSFIKSSI 121 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGg------------~~----------------~~~~---~~~~~~~r~~f~~~i~ 121 (352)
....++.+++.++++ |++|++=+=- +. .|.. -..++..|+-+++++.
T Consensus 317 ~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 317 SPDGFAQFVDACHRA--GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 567799999988888 9999976511 00 0111 1235677889999999
Q ss_pred HHHHHcCCCeEEEeec--------------C-CCCCcchhH--HHHHHHHHHHHHhhh
Q 046015 122 EMARFYRFHGLDLHGV--------------L-PDKCTNMTK--LGTLFDEWRAEVTSE 162 (352)
Q Consensus 122 ~~l~~~~~DGidiD~e--------------~-~~~~~~~~~--~~~~l~~lr~~l~~~ 162 (352)
-|++++++||+-+|-- + |.....++| -..|++++++.+++.
T Consensus 395 ~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~gg~en~ea~~Fl~~ln~~v~~~ 452 (730)
T PRK12568 395 EWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHGGRENLEAVAFLRQLNREIASQ 452 (730)
T ss_pred HHHHHhCceEEEEcCHhHhhhhccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 9999999999999921 1 110111223 358999999999876
No 36
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.63 E-value=0.94 Score=43.16 Aligned_cols=121 Identities=12% Similarity=0.156 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCCeEEEeec--CCCC----------------------Cc---c--hhHHHHHHHHHHHHHh
Q 046015 110 SSNRRSFIKSSIEMARFYRFHGLDLHGV--LPDK----------------------CT---N--MTKLGTLFDEWRAEVT 160 (352)
Q Consensus 110 ~~~r~~f~~~i~~~l~~~~~DGidiD~e--~~~~----------------------~~---~--~~~~~~~l~~lr~~l~ 160 (352)
++.|+-..+-+++.+++|..|||.+|-- +|.. +. + +++...|++++...++
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VK 260 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVK 260 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4556666677889999999999999842 2210 11 1 3478899999999999
Q ss_pred hhhhhcCCceeEEEEEe-cC-CccccccCCC-----hhhh--hccCcEEEeeccccCCCCCCchh----HHhHcCCC-Cc
Q 046015 161 SESRKSGKSQLLLVMTS-HH-LPALESVSYP-----LDSM--QRNLDWIHVLTFDYYLPTRDNFT----EWLKRGFQ-AK 226 (352)
Q Consensus 161 ~~~~~~~~~~~~ls~~~-~~-~~~~~~~~~d-----~~~l--~~~vD~i~~m~yd~~~~~~~~~~----~~~~~g~p-~~ 226 (352)
+. +++..++++. ++ ..... .|+ .... ..++|++..|.|=.+........ .|...-+| +-
T Consensus 261 av-----Kp~v~~svsp~n~~~~~~f--~y~~~~qDw~~Wv~~G~iD~l~pqvYr~~~~~~~~~~~~~~~wa~~~~~~~i 333 (418)
T COG1649 261 AV-----KPNVKFSVSPFNPLGSATF--AYDYFLQDWRRWVRQGLIDELAPQVYRTLSTFVAEYDTLAKWWANTVIPTRI 333 (418)
T ss_pred hh-----CCCeEEEEccCCCCCccce--ehhhhhhhHHHHHHcccHhhhhhhhhcccccchhhhhhHHHHhhhhhcccce
Confidence 87 5678888886 31 11011 132 1111 46899999999954332221111 34433333 34
Q ss_pred ceeeeccccee
Q 046015 227 KLVLGLPYHGY 237 (352)
Q Consensus 227 Kivlglp~yG~ 237 (352)
.|..|+..|..
T Consensus 334 ~i~~G~~~~~v 344 (418)
T COG1649 334 GIYIGLAAYKV 344 (418)
T ss_pred eeecchhhccC
Confidence 46666666543
No 37
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=88.94 E-value=1.3 Score=39.81 Aligned_cols=84 Identities=11% Similarity=0.112 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHcCCCeEEEee-cCCCCC---------------cchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEec
Q 046015 115 SFIKSSIEMARFYRFHGLDLHG-VLPDKC---------------TNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSH 178 (352)
Q Consensus 115 ~f~~~i~~~l~~~~~DGidiD~-e~~~~~---------------~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~ 178 (352)
+.--+|++...+.|||-|.+|+ .+|.+- +..+.+..|+---|+++. .-+|+.+-
T Consensus 196 eYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~----------vpIS~DIY 265 (400)
T COG1306 196 EYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE----------VPISADIY 265 (400)
T ss_pred hhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc----------cceEEEee
Confidence 3446788888999999999997 566531 223456677777777776 34777765
Q ss_pred CC----ccccccCCChhhhhccCcEEEeeccccC
Q 046015 179 HL----PALESVSYPLDSMQRNLDWIHVLTFDYY 208 (352)
Q Consensus 179 ~~----~~~~~~~~d~~~l~~~vD~i~~m~yd~~ 208 (352)
.. +.....+-++..|.++||.|.-|.|--|
T Consensus 266 G~nGw~~t~~~~GQ~~e~ls~yVDvIsPMfYPSH 299 (400)
T COG1306 266 GQNGWSSTDMALGQFWEALSSYVDVISPMFYPSH 299 (400)
T ss_pred cccCccCCcchhhhhHHHHHhhhhhccccccccc
Confidence 32 2222234578889999999999999655
No 38
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.69 E-value=6 Score=35.92 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCC------cchh
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKC------TNMT 146 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~------~~~~ 146 (352)
....+.+.+...++..++..++++|+|. ++ +.++ ..++.+.++|+|+|+|++--|... ++.+
T Consensus 81 g~~~~~~~i~~~~~~~~~~pvi~si~g~--------~~---~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~ 148 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGS--------SK---EDYV-ELARKIERAGAKALELNLSCPNVGGGRQLGQDPE 148 (289)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeccC--------CH---HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHH
Confidence 3344444433344332578899999983 22 2333 345566677999999999866532 2334
Q ss_pred HHHHHHHHHHHHH
Q 046015 147 KLGTLFDEWRAEV 159 (352)
Q Consensus 147 ~~~~~l~~lr~~l 159 (352)
...++++++|+..
T Consensus 149 ~~~eiv~~vr~~~ 161 (289)
T cd02810 149 AVANLLKAVKAAV 161 (289)
T ss_pred HHHHHHHHHHHcc
Confidence 5667777777665
No 39
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=88.04 E-value=17 Score=34.21 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEE---eCCcc-----------------chhhhcC---hhhHHHHHHHHHHHHHHcCCC
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSV---WGGAI-----------------FSSMINQ---SSNRRSFIKSSIEMARFYRFH 130 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsi---Gg~~~-----------------~~~~~~~---~~~r~~f~~~i~~~l~~~~~D 130 (352)
-+.++++++.+|+. |.|+++-| |.... ....++. ++..+.|++.... +++-|||
T Consensus 76 i~~~~~l~~~vh~~--g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~-a~~aGfD 152 (353)
T cd02930 76 AAGHRLITDAVHAE--GGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAAL-AREAGYD 152 (353)
T ss_pred HHHHHHHHHHHHHc--CCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCCC
Confidence 45577777777776 88888777 22110 0011111 1234456655544 4567999
Q ss_pred eEEEeecC---------CC----------CCcc-hhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCCh
Q 046015 131 GLDLHGVL---------PD----------KCTN-MTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPL 190 (352)
Q Consensus 131 GidiD~e~---------~~----------~~~~-~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~ 190 (352)
||+|..-+ |. +.++ .......++++|+.+.. ++.|.+.+.+... ...+++.
T Consensus 153 gVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~--------d~~v~iRi~~~D~-~~~g~~~ 223 (353)
T cd02930 153 GVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGE--------DFIIIYRLSMLDL-VEGGSTW 223 (353)
T ss_pred EEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCC--------CceEEEEeccccc-CCCCCCH
Confidence 99997631 21 1112 23455777777777753 3566665553211 1112332
Q ss_pred -------hhhhcc-CcEEEee
Q 046015 191 -------DSMQRN-LDWIHVL 203 (352)
Q Consensus 191 -------~~l~~~-vD~i~~m 203 (352)
+.|.++ +|++++.
T Consensus 224 ~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 224 EEVVALAKALEAAGADILNTG 244 (353)
T ss_pred HHHHHHHHHHHHcCCCEEEeC
Confidence 233333 8999984
No 40
>PRK12313 glycogen branching enzyme; Provisional
Probab=87.89 E-value=5.9 Score=40.48 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeC-------Cc--cch----------------------hhhcChhhHHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVWG-------GA--IFS----------------------SMINQSSNRRSFIKSSI 121 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGg-------~~--~~~----------------------~~~~~~~~r~~f~~~i~ 121 (352)
....++.+++.++++ |++|++=+=- +. .|. --..++..|+-+++++.
T Consensus 218 t~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~ 295 (633)
T PRK12313 218 TPEDFMYLVDALHQN--GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSAL 295 (633)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 567799999999988 9999976410 00 000 01125677888999999
Q ss_pred HHHHHcCCCeEEEeecC-C----------------CCCcchhHHHHHHHHHHHHHhhh
Q 046015 122 EMARFYRFHGLDLHGVL-P----------------DKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 122 ~~l~~~~~DGidiD~e~-~----------------~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
-|+++|++||+-+|--. . +..++. .-..|++++++.+++.
T Consensus 296 ~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~fl~~~~~~v~~~ 352 (633)
T PRK12313 296 FWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYGGRENL-EAIYFLQKLNEVVYLE 352 (633)
T ss_pred HHHHHhCCcEEEEcChhhhhhcccccccCcCCcccCCCCCc-HHHHHHHHHHHHHHHH
Confidence 99999999999999210 0 000111 2368999999988876
No 41
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=87.74 E-value=5.9 Score=40.21 Aligned_cols=79 Identities=10% Similarity=0.191 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEE-----eCC-c-cch------------------------h-hhcChhhHHHHHHHHHH
Q 046015 75 QFFVNFTNTVKHRNPSVITLLSV-----WGG-A-IFS------------------------S-MINQSSNRRSFIKSSIE 122 (352)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsi-----Gg~-~-~~~------------------------~-~~~~~~~r~~f~~~i~~ 122 (352)
..++.+++.+|++ |++|++=+ ++. . .|. . ...++..|+-+++++.-
T Consensus 229 ~efk~lV~~~H~~--Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~ 306 (605)
T TIGR02104 229 RELKQMIQALHEN--GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLY 306 (605)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHH
Confidence 5689999988888 99999755 110 0 110 0 01245678889999999
Q ss_pred HHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhh
Q 046015 123 MARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 123 ~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
|++++++||+-+|.-.-. + ..|+++++++++..
T Consensus 307 W~~e~~iDGfR~D~~~~~---~----~~~~~~~~~~~~~~ 339 (605)
T TIGR02104 307 WVKEYNIDGFRFDLMGIH---D----IETMNEIRKALNKI 339 (605)
T ss_pred HHHHcCCCEEEEechhcC---C----HHHHHHHHHHHHhh
Confidence 999999999999965221 2 34677777777654
No 42
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=86.48 E-value=23 Score=33.11 Aligned_cols=118 Identities=13% Similarity=0.139 Sum_probs=64.4
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEe--CCccc-----------hh-----------hhcC---hhhHHHHHHHHHHHHHH
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSVW--GGAIF-----------SS-----------MINQ---SSNRRSFIKSSIEMARF 126 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiG--g~~~~-----------~~-----------~~~~---~~~r~~f~~~i~~~l~~ 126 (352)
-+.++++++.+|++ |.|+++-|. |.... +. .++. .+..+.|++... .+++
T Consensus 76 i~~~~~l~~~vh~~--g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~-ra~~ 152 (343)
T cd04734 76 IPGFRRLAEAVHAH--GAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAAR-RCQA 152 (343)
T ss_pred HHHHHHHHHHHHhc--CCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHH-HHHH
Confidence 35678888888887 788887763 32100 00 0100 133456666554 4466
Q ss_pred cCCCeEEEeec--C-------CC----------CCcch-hHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCcccccc
Q 046015 127 YRFHGLDLHGV--L-------PD----------KCTNM-TKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESV 186 (352)
Q Consensus 127 ~~~DGidiD~e--~-------~~----------~~~~~-~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~ 186 (352)
-|||||+|+.- | |. +.+++ ......++++|+.... ++.+.+.+.+.... ..
T Consensus 153 aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~--------~~~v~iRl~~~~~~-~~ 223 (343)
T cd04734 153 GGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP--------DFIVGIRISGDEDT-EG 223 (343)
T ss_pred cCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC--------CCeEEEEeehhhcc-CC
Confidence 79999999983 2 21 11222 3455667777766642 35666666543221 11
Q ss_pred CCC-------hhhhhc--cCcEEEee
Q 046015 187 SYP-------LDSMQR--NLDWIHVL 203 (352)
Q Consensus 187 ~~d-------~~~l~~--~vD~i~~m 203 (352)
+.+ ...|.+ .+|++.|-
T Consensus 224 G~~~~e~~~~~~~l~~~G~vd~i~vs 249 (343)
T cd04734 224 GLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 222 223444 37999884
No 43
>PRK14706 glycogen branching enzyme; Provisional
Probab=86.43 E-value=9.5 Score=38.95 Aligned_cols=88 Identities=8% Similarity=0.030 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEe----CCc------------------------cchh---hhcChhhHHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVW----GGA------------------------IFSS---MINQSSNRRSFIKSSI 121 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiG----g~~------------------------~~~~---~~~~~~~r~~f~~~i~ 121 (352)
....++.+++.++++ |++|++-+= +.. .|.. -..+++.|+-+++++.
T Consensus 215 ~~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~ 292 (639)
T PRK14706 215 TPEDFKYLVNHLHGL--GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSAL 292 (639)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 457789999988888 999997651 000 0000 1135678888999999
Q ss_pred HHHHHcCCCeEEEee-cCCC----C--------C--cchhHHHHHHHHHHHHHhhh
Q 046015 122 EMARFYRFHGLDLHG-VLPD----K--------C--TNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 122 ~~l~~~~~DGidiD~-e~~~----~--------~--~~~~~~~~~l~~lr~~l~~~ 162 (352)
-|++++++||+-+|- .... . . .....=..|++++++.+++.
T Consensus 293 ~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~gg~~n~~a~~fl~~ln~~v~~~ 348 (639)
T PRK14706 293 KWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHGGRENLEAIAFLKRLNEVTHHM 348 (639)
T ss_pred HHHHHhCCCeEEEeeehheeecccCcccccccccCCcccHHHHHHHHHHHHHHHHh
Confidence 999999999999994 2210 0 0 01123468999999998876
No 44
>PRK05402 glycogen branching enzyme; Provisional
Probab=86.33 E-value=8.6 Score=39.98 Aligned_cols=88 Identities=11% Similarity=0.127 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEe-C---Cc-----c-------------------ch---hhhcChhhHHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVW-G---GA-----I-------------------FS---SMINQSSNRRSFIKSSI 121 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiG-g---~~-----~-------------------~~---~~~~~~~~r~~f~~~i~ 121 (352)
....++.+++.++++ |++|++=+= + .. . +. --..++..|+-+++++.
T Consensus 313 t~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~ 390 (726)
T PRK05402 313 TPDDFRYFVDACHQA--GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANAL 390 (726)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHH
Confidence 567799999999888 999997651 0 00 0 00 02235677888999999
Q ss_pred HHHHHcCCCeEEEee-cCC--------------CC--CcchhHHHHHHHHHHHHHhhh
Q 046015 122 EMARFYRFHGLDLHG-VLP--------------DK--CTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 122 ~~l~~~~~DGidiD~-e~~--------------~~--~~~~~~~~~~l~~lr~~l~~~ 162 (352)
-|++++++||+-+|- ... .. ..+...-..|++++++.+++.
T Consensus 391 ~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~fl~~~~~~~~~~ 448 (726)
T PRK05402 391 YWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNIYGGRENLEAIDFLRELNAVVHEE 448 (726)
T ss_pred HHHHHhCCcEEEECCHHHhhhccccccccccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999993 110 00 001113468999999988876
No 45
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.78 E-value=30 Score=32.49 Aligned_cols=129 Identities=15% Similarity=0.250 Sum_probs=69.5
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEEEEEe--CCc---cc---------h------------hhhcC---hhhHHHHHHHH
Q 046015 70 NSTSEQFFVNFTNTVKHRNPSVITLLSVW--GGA---IF---------S------------SMINQ---SSNRRSFIKSS 120 (352)
Q Consensus 70 ~~~~~~~~~~~~~~lk~~~~~~kvllsiG--g~~---~~---------~------------~~~~~---~~~r~~f~~~i 120 (352)
+++.-..++++++.+|++ |.|+++-|. |.. .. + +.++. ....+.|++..
T Consensus 73 ~d~~i~~~~~l~~~vh~~--G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA 150 (353)
T cd04735 73 DDSDIPGLRKLAQAIKSK--GAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEAT 150 (353)
T ss_pred ChhhhHHHHHHHHHHHhC--CCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 344557788888888887 888887762 211 00 0 11110 12344566655
Q ss_pred HHHHHHcCCCeEEEeecC---------CC----------CCcchh-HHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCC
Q 046015 121 IEMARFYRFHGLDLHGVL---------PD----------KCTNMT-KLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHL 180 (352)
Q Consensus 121 ~~~l~~~~~DGidiD~e~---------~~----------~~~~~~-~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~ 180 (352)
.. +++-|||||+|+.-+ |. +.+++. .....++++|+++...- .+++.|.+.+.+.
T Consensus 151 ~~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~----~~~~~v~~R~s~~ 225 (353)
T cd04735 151 RR-AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHA----DKDFILGYRFSPE 225 (353)
T ss_pred HH-HHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhcccc----CCCceEEEEECcc
Confidence 44 566899999998632 21 112222 34477777777775110 0246677776643
Q ss_pred ccccccCCC------h-hhhhcc-CcEEEeeccc
Q 046015 181 PALESVSYP------L-DSMQRN-LDWIHVLTFD 206 (352)
Q Consensus 181 ~~~~~~~~d------~-~~l~~~-vD~i~~m~yd 206 (352)
... ..+.+ + ..+.+. +|+|.+-...
T Consensus 226 ~~~-~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 226 EPE-EPGIRMEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred ccc-CCCCCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 221 11222 1 233332 8999996543
No 46
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=85.74 E-value=6.9 Score=36.12 Aligned_cols=52 Identities=10% Similarity=0.007 Sum_probs=33.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCCeEEEeec----CCCC-----CcchhHHHHHHHHHHHHHhhh
Q 046015 110 SSNRRSFIKSSIEMARFYRFHGLDLHGV----LPDK-----CTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 110 ~~~r~~f~~~i~~~l~~~~~DGidiD~e----~~~~-----~~~~~~~~~~l~~lr~~l~~~ 162 (352)
++-|.-+.+. ++.+.+.||||+.+|.- +... +...+...+++++|.+..++.
T Consensus 143 ~~W~~il~~r-l~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~ 203 (315)
T TIGR01370 143 PEWKAIAFSY-LDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQ 203 (315)
T ss_pred HHHHHHHHHH-HHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3455556655 66777889999999952 1110 223356788888886666654
No 47
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=84.95 E-value=8.7 Score=38.44 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeC-C---c-----c----ch--------h--hhcCh---hhHHHHHHHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVWG-G---A-----I----FS--------S--MINQS---SNRRSFIKSSIEMARF 126 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGg-~---~-----~----~~--------~--~~~~~---~~r~~f~~~i~~~l~~ 126 (352)
....++.+++.++++ |++|++=+=- . . . |. . -..++ ..|+-+++++.-|+++
T Consensus 158 ~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 158 GPDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 567789999988888 9999976511 0 0 0 00 0 01234 7788899999999999
Q ss_pred cCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhh
Q 046015 127 YRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 127 ~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
|++||+-+|--..-... .-..|++++++.+++.
T Consensus 236 ~~iDGfR~D~~~~~~~~---~~~~~l~~~~~~~~~~ 268 (542)
T TIGR02402 236 YHFDGLRLDAVHAIADT---SAKHILEELAREVHEL 268 (542)
T ss_pred hCCcEEEEeCHHHhccc---cHHHHHHHHHHHHHHH
Confidence 99999999953211111 1257888988888876
No 48
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=83.99 E-value=15 Score=37.33 Aligned_cols=88 Identities=14% Similarity=0.201 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeC-------Cc--cc-------------------hh---hhcChhhHHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVWG-------GA--IF-------------------SS---MINQSSNRRSFIKSSI 121 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGg-------~~--~~-------------------~~---~~~~~~~r~~f~~~i~ 121 (352)
+...++.+++.++++ |++|++=+=- +. .| .. -..++..|+-+++++.
T Consensus 204 t~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~ 281 (613)
T TIGR01515 204 TPDDFMYFVDACHQA--GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANAL 281 (613)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHH
Confidence 466799999989888 9999976511 00 00 00 1135678889999999
Q ss_pred HHHHHcCCCeEEEeec-CC-------------CCC-c--chhHHHHHHHHHHHHHhhh
Q 046015 122 EMARFYRFHGLDLHGV-LP-------------DKC-T--NMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 122 ~~l~~~~~DGidiD~e-~~-------------~~~-~--~~~~~~~~l~~lr~~l~~~ 162 (352)
-|+++|++||+-+|-- .. ... . ....=..|++++++.+++.
T Consensus 282 ~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~v~~~ 339 (613)
T TIGR01515 282 YWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNEDGGRENLEAVDFLRKLNQTVYEA 339 (613)
T ss_pred HHHHHhCCcEEEEcCHHHhhhhccccccccccccccCCcCChHHHHHHHHHHHHHHHH
Confidence 9999999999999952 11 000 0 0112357999999888866
No 49
>PLN02960 alpha-amylase
Probab=83.45 E-value=15 Score=38.63 Aligned_cols=87 Identities=7% Similarity=0.047 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEe--------CCc--c-------------------chh---hhcChhhHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVW--------GGA--I-------------------FSS---MINQSSNRRSFIKSS 120 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiG--------g~~--~-------------------~~~---~~~~~~~r~~f~~~i 120 (352)
....++.+++.++++ |++|++=+= ++. . |.. -..++..|+-+++++
T Consensus 464 tp~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna 541 (897)
T PLN02960 464 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNL 541 (897)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHH
Confidence 457789999988887 999998761 000 0 110 123567788899999
Q ss_pred HHHHHHcCCCeEEEeec-------------------CCCCCcchhHHHHHHHHHHHHHhhh
Q 046015 121 IEMARFYRFHGLDLHGV-------------------LPDKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 121 ~~~l~~~~~DGidiD~e-------------------~~~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
.-|+++|++||+-+|-- ++.. .....-..||+++.+.++..
T Consensus 542 ~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~~~n~-~~d~~Ai~fL~~lN~~v~~~ 601 (897)
T PLN02960 542 NWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDEYCNQ-YVDRDALIYLILANEMLHQL 601 (897)
T ss_pred HHHHHHHCCCceeecccceeeeeccCccccCCcccccCCc-cCCchHHHHHHHHHHHHHhh
Confidence 99999999999999821 1111 11234567888888888754
No 50
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=83.39 E-value=3.1 Score=38.90 Aligned_cols=79 Identities=11% Similarity=0.189 Sum_probs=53.4
Q ss_pred HHHHHHhcCCCcEEEEEE-------eCCc-cchhhh-cChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC-CcchhHHH
Q 046015 80 FTNTVKHRNPSVITLLSV-------WGGA-IFSSMI-NQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK-CTNMTKLG 149 (352)
Q Consensus 80 ~~~~lk~~~~~~kvllsi-------Gg~~-~~~~~~-~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-~~~~~~~~ 149 (352)
.+++++.. |+.|+=.| ||.. -+..|+ .+++-.=.+++.++++.+.|||||--|+=|-.+. ++..++..
T Consensus 132 VIDaaHrN--GVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M~ 209 (553)
T COG4724 132 VIDAAHRN--GVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKMR 209 (553)
T ss_pred hhhhhhcC--CCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHHH
Confidence 55555544 89998665 3333 333333 3555566799999999999999999999885542 45556666
Q ss_pred HHHHHHHHHHh
Q 046015 150 TLFDEWRAEVT 160 (352)
Q Consensus 150 ~~l~~lr~~l~ 160 (352)
.|+..+++.-.
T Consensus 210 ~f~ly~ke~~~ 220 (553)
T COG4724 210 QFMLYSKEYAA 220 (553)
T ss_pred HHHHHHHhccc
Confidence 77766665443
No 51
>PRK14705 glycogen branching enzyme; Provisional
Probab=83.17 E-value=17 Score=39.92 Aligned_cols=88 Identities=13% Similarity=0.158 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEe-------CCc--c-------------------chh---hhcChhhHHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVW-------GGA--I-------------------FSS---MINQSSNRRSFIKSSI 121 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiG-------g~~--~-------------------~~~---~~~~~~~r~~f~~~i~ 121 (352)
....++.+++.++++ |++|++=+= .|. . |.. -..++.-|+-+++++.
T Consensus 813 t~~dfk~lVd~~H~~--GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~ 890 (1224)
T PRK14705 813 HPDEFRFLVDSLHQA--GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANAL 890 (1224)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHH
Confidence 567799999989888 999997641 110 0 000 0234677888999999
Q ss_pred HHHHHcCCCeEEEeec-CC--------------CCCcchh--HHHHHHHHHHHHHhhh
Q 046015 122 EMARFYRFHGLDLHGV-LP--------------DKCTNMT--KLGTLFDEWRAEVTSE 162 (352)
Q Consensus 122 ~~l~~~~~DGidiD~e-~~--------------~~~~~~~--~~~~~l~~lr~~l~~~ 162 (352)
-|+++|++||+-+|-- .. .....++ .=+.|++++.+.++..
T Consensus 891 ~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~~gg~en~~ai~fl~~ln~~v~~~ 948 (1224)
T PRK14705 891 YWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNRFGGRENLEAISFLQEVNATVYKT 948 (1224)
T ss_pred HHHHHhCCCcEEEeehhhhhhcccccccccccccccCCccChHHHHHHHHHHHHHHHH
Confidence 9999999999999862 11 0001112 2368999999888865
No 52
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=79.49 E-value=6.1 Score=39.43 Aligned_cols=54 Identities=7% Similarity=0.124 Sum_probs=37.9
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeEEEeecC--------CCCC--cchhHHHHHHHHHHHHHhh
Q 046015 108 NQSSNRRSFIKSSIEMARFYRFHGLDLHGVL--------PDKC--TNMTKLGTLFDEWRAEVTS 161 (352)
Q Consensus 108 ~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~--------~~~~--~~~~~~~~~l~~lr~~l~~ 161 (352)
.|+.-|.-+++++.+.++..||||+.||=-. .+.+ .=...|..||+++++++..
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~ 301 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPD 301 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCC
Confidence 3556688899999999999999999998421 1211 1256899999999999953
No 53
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=78.83 E-value=13 Score=34.33 Aligned_cols=46 Identities=7% Similarity=0.144 Sum_probs=25.4
Q ss_pred ccEEEEeeEEEeCCCce----E-eeCCCChHHHHHHHHHHHhcCCCcEEEEEE
Q 046015 50 FSNLMCAFAFINSSTYN----I-FINSTSEQFFVNFTNTVKHRNPSVITLLSV 97 (352)
Q Consensus 50 ~Thi~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsi 97 (352)
.--|+.....+.+.+.. . ..+++....++++++.+|++ |.|+++-|
T Consensus 47 ~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~--g~~~~~Ql 97 (327)
T cd02803 47 VGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAH--GAKIFAQL 97 (327)
T ss_pred CcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhC--CCHhhHHh
Confidence 44455555556555421 1 12233446678888778776 67766544
No 54
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.94 E-value=11 Score=35.14 Aligned_cols=120 Identities=13% Similarity=0.249 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEe--CCc---cch----------------------hhhcC---hhhHHHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVW--GGA---IFS----------------------SMINQ---SSNRRSFIKSSIE 122 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiG--g~~---~~~----------------------~~~~~---~~~r~~f~~~i~~ 122 (352)
.-+.++++.+.+|++ |.|+++-|. |.. .+. +.++. ....+.|++.. .
T Consensus 80 ~i~~~~~l~~~vh~~--G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA-~ 156 (338)
T cd04733 80 DLEAFREWAAAAKAN--GALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAA-R 156 (338)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHH-H
Confidence 456678888888877 888887652 221 010 00100 12344566655 4
Q ss_pred HHHHcCCCeEEEeecC---------CC----------CCcch-hHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCcc
Q 046015 123 MARFYRFHGLDLHGVL---------PD----------KCTNM-TKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPA 182 (352)
Q Consensus 123 ~l~~~~~DGidiD~e~---------~~----------~~~~~-~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~ 182 (352)
.+++.|||||+|+.-. |. +.+++ ......++++|+.+.. ++.|.+.+.+. .
T Consensus 157 ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~--------d~~v~vris~~-~ 227 (338)
T cd04733 157 LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGP--------GFPVGIKLNSA-D 227 (338)
T ss_pred HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCC--------CCeEEEEEcHH-H
Confidence 5678899999998653 32 11222 2344677777777643 35677766532 1
Q ss_pred ccccCCC-------hhhhhcc-CcEEEeec
Q 046015 183 LESVSYP-------LDSMQRN-LDWIHVLT 204 (352)
Q Consensus 183 ~~~~~~d-------~~~l~~~-vD~i~~m~ 204 (352)
....+++ ...|.+. +|+|.|..
T Consensus 228 ~~~~g~~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 228 FQRGGFTEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 1122233 2233343 78888754
No 55
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=77.81 E-value=15 Score=34.23 Aligned_cols=47 Identities=2% Similarity=-0.006 Sum_probs=27.4
Q ss_pred CccEEEEeeEEEeCCCce----E-eeCCCChHHHHHHHHHHHhcCCCcEEEEEE
Q 046015 49 LFSNLMCAFAFINSSTYN----I-FINSTSEQFFVNFTNTVKHRNPSVITLLSV 97 (352)
Q Consensus 49 ~~Thi~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsi 97 (352)
.+--|+.....+++.+.. + ..+++.-..++++.+.+|++ |.|+++-+
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~--G~~~~~QL 97 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ--GAKIGIQL 97 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc--CCcEEEEc
Confidence 355556555556555321 1 12233346677887778876 78888776
No 56
>PLN02411 12-oxophytodienoate reductase
Probab=76.97 E-value=7.9 Score=37.01 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEE
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSV 97 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsi 97 (352)
.-+.++++++.+|++ |.|+++-|
T Consensus 85 ~i~~~~~l~~avH~~--G~~i~~QL 107 (391)
T PLN02411 85 QVEAWKKVVDAVHAK--GSIIFCQL 107 (391)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEec
Confidence 345677887778877 88888776
No 57
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=76.84 E-value=13 Score=35.25 Aligned_cols=143 Identities=11% Similarity=0.101 Sum_probs=73.8
Q ss_pred ccEEEEeeEEEeCCCce-----E-eeCCCChHHHHHHHHHHHhcCCCcEEEEEE--eCCc--c-------c--h------
Q 046015 50 FSNLMCAFAFINSSTYN-----I-FINSTSEQFFVNFTNTVKHRNPSVITLLSV--WGGA--I-------F--S------ 104 (352)
Q Consensus 50 ~Thi~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsi--Gg~~--~-------~--~------ 104 (352)
+--|+.....+.+.+.. . ..+++.-+.++++++.+|++ |.|+++-| +|-. . + +
T Consensus 52 ~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~--G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~ 129 (370)
T cd02929 52 WGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH--GALAGIELWHGGAHAPNRESRETPLGPSQLPSEF 129 (370)
T ss_pred ceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC--CCeEEEecccCCCCCCccCCCCCccCCCCCCCCc
Confidence 44455555556555321 1 12223446677888888876 88888776 2211 0 0 0
Q ss_pred --------hhhcCh---hhHHHHHHHHHHHHHHcCCCeEEEeecC---------CC----------CCcch-hHHHHHHH
Q 046015 105 --------SMINQS---SNRRSFIKSSIEMARFYRFHGLDLHGVL---------PD----------KCTNM-TKLGTLFD 153 (352)
Q Consensus 105 --------~~~~~~---~~r~~f~~~i~~~l~~~~~DGidiD~e~---------~~----------~~~~~-~~~~~~l~ 153 (352)
+.++.+ ...+.|++... .+++-|||||+|+.-. |. +.+++ ......++
T Consensus 130 ~~~~~~~p~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~ 208 (370)
T cd02929 130 PTGGPVQAREMDKDDIKRVRRWYVDAAL-RARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLE 208 (370)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHH
Confidence 011111 23456776554 5566799999998764 22 11222 23446666
Q ss_pred HHHHHHhhhhhhcCCceeEEEEEecCCcccccc-CCC-------hhhhhccCcEEEee
Q 046015 154 EWRAEVTSESRKSGKSQLLLVMTSHHLPALESV-SYP-------LDSMQRNLDWIHVL 203 (352)
Q Consensus 154 ~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~-~~d-------~~~l~~~vD~i~~m 203 (352)
++|++... ++.|.+.+.+....... ..+ .+.|.+.+|++++-
T Consensus 209 aIr~~vg~--------~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs 258 (370)
T cd02929 209 DTKDAVGD--------DCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVN 258 (370)
T ss_pred HHHHHcCC--------CceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEec
Confidence 67666642 35666666543221111 011 12345568888774
No 58
>PRK10785 maltodextrin glucosidase; Provisional
Probab=76.58 E-value=30 Score=35.15 Aligned_cols=88 Identities=9% Similarity=0.044 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEe-----CCc-c---------------------c------------h------h-h
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVW-----GGA-I---------------------F------------S------S-M 106 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiG-----g~~-~---------------------~------------~------~-~ 106 (352)
+.+.++.+++.+|++ |+||++=+= ... . | . . -
T Consensus 224 t~~df~~Lv~~aH~r--GikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN 301 (598)
T PRK10785 224 GDAALLRLRHATQQR--GMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLD 301 (598)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCcccc
Confidence 567899999988888 999997551 100 0 0 0 0 0
Q ss_pred hcChhhHHHHHH---H-HHHHHHH-cCCCeEEEeecCCC-CCcchhHHHHHHHHHHHHHhhh
Q 046015 107 INQSSNRRSFIK---S-SIEMARF-YRFHGLDLHGVLPD-KCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 107 ~~~~~~r~~f~~---~-i~~~l~~-~~~DGidiD~e~~~-~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
..|++.|+.+++ + +..|+++ +|+||.-+|--... .......-..|++++|+.+++.
T Consensus 302 ~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~ 363 (598)
T PRK10785 302 FQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEE 363 (598)
T ss_pred CCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhh
Confidence 125677777875 3 4557886 89999999964211 0111122347889999888765
No 59
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=76.24 E-value=7.7 Score=36.61 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEe--C-C--c--c-------------------chhhhcCh---hhHHHHHHHHHHHH
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSVW--G-G--A--I-------------------FSSMINQS---SNRRSFIKSSIEMA 124 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiG--g-~--~--~-------------------~~~~~~~~---~~r~~f~~~i~~~l 124 (352)
-..++++.+.+|++ |.|+++-|. | . . . ..+.++.+ ..++.|++....-
T Consensus 82 i~~~~~vt~avH~~--G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA- 158 (363)
T COG1902 82 IPGLKRLTEAVHAH--GAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRA- 158 (363)
T ss_pred hHHHHHHHHHHHhc--CCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHH-
Confidence 56788888888887 778887773 2 1 0 0 01112111 2234455555444
Q ss_pred HHcCCCeEEEeecC-------------------CCCCcchh-HHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCcccc
Q 046015 125 RFYRFHGLDLHGVL-------------------PDKCTNMT-KLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALE 184 (352)
Q Consensus 125 ~~~~~DGidiD~e~-------------------~~~~~~~~-~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~ 184 (352)
++-|||||+|+--+ -++.+++. .....++++|++.... +.|.+.+.+.....
T Consensus 159 ~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~--------~~vg~Rls~~d~~~ 230 (363)
T COG1902 159 KEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGAD--------FPVGVRLSPDDFFD 230 (363)
T ss_pred HHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCC--------ceEEEEECccccCC
Confidence 55899999996542 22223443 3447777777777754 45666666543312
Q ss_pred ccCCC-------hhhhhcc--CcEEEeeccc
Q 046015 185 SVSYP-------LDSMQRN--LDWIHVLTFD 206 (352)
Q Consensus 185 ~~~~d-------~~~l~~~--vD~i~~m~yd 206 (352)
..+++ .+.|.+. +|++++..-+
T Consensus 231 ~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~ 261 (363)
T COG1902 231 GGGLTIEEAVELAKALEEAGLVDYIHVSEGG 261 (363)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEeeccc
Confidence 21333 2233333 6999887644
No 60
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=75.73 E-value=1.6 Score=32.62 Aligned_cols=12 Identities=50% Similarity=0.434 Sum_probs=7.7
Q ss_pred CchhHHHHHHHH
Q 046015 1 MAYKIVTLFLLL 12 (352)
Q Consensus 1 m~~~~~~~~l~~ 12 (352)
|++|.+++|.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 898886644333
No 61
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=75.40 E-value=18 Score=34.49 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEe---CCc---cc---------hhhh-----------cCh----hhHHHHHHHHHHH
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSVW---GGA---IF---------SSMI-----------NQS----SNRRSFIKSSIEM 123 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiG---g~~---~~---------~~~~-----------~~~----~~r~~f~~~i~~~ 123 (352)
.+.++++++.+|++ |.++++-|. |.. .. +.+. .+. +..+.|++.. ..
T Consensus 82 i~~~k~l~davh~~--G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~r 158 (382)
T cd02931 82 IRTAKEMTERVHAY--GTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESA-VI 158 (382)
T ss_pred hHHHHHHHHHHHHc--CCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHH-HH
Confidence 35678888888877 889988872 321 10 0000 011 3344566654 44
Q ss_pred HHHcCCCeEEEee
Q 046015 124 ARFYRFHGLDLHG 136 (352)
Q Consensus 124 l~~~~~DGidiD~ 136 (352)
+++-|||||+|+.
T Consensus 159 a~~AGfDgVEih~ 171 (382)
T cd02931 159 AKEAGFDGVEIHA 171 (382)
T ss_pred HHHcCCCEEEEec
Confidence 5567999999997
No 62
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=74.88 E-value=29 Score=37.83 Aligned_cols=61 Identities=20% Similarity=0.290 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeC-Cc----cch-----------------------h-hhcChhhHHHHHHHHHHHHH
Q 046015 75 QFFVNFTNTVKHRNPSVITLLSVWG-GA----IFS-----------------------S-MINQSSNRRSFIKSSIEMAR 125 (352)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGg-~~----~~~-----------------------~-~~~~~~~r~~f~~~i~~~l~ 125 (352)
..++.+++.+|++ |++|++=+=- .. .|. . ...++..|+-+++++.-|++
T Consensus 555 ~EfK~LV~alH~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHH
Confidence 5688999888888 9999976411 00 000 0 01235667889999999999
Q ss_pred HcCCCeEEEeec
Q 046015 126 FYRFHGLDLHGV 137 (352)
Q Consensus 126 ~~~~DGidiD~e 137 (352)
+|++||.-||.-
T Consensus 633 ey~VDGFRfDl~ 644 (1111)
T TIGR02102 633 EFKVDGFRFDMM 644 (1111)
T ss_pred hcCCcEEEEecc
Confidence 999999999975
No 63
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=74.81 E-value=20 Score=31.15 Aligned_cols=64 Identities=11% Similarity=0.178 Sum_probs=40.2
Q ss_pred HhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC-----------CcchhHHHHHHH
Q 046015 85 KHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK-----------CTNMTKLGTLFD 153 (352)
Q Consensus 85 k~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----------~~~~~~~~~~l~ 153 (352)
.....+..++++|+|. ++ +.|++.. ..+.+.|||||+|+.-.|.. ..+.+...++++
T Consensus 49 ~~~~~~~p~~~qi~g~--------~~---~~~~~aa-~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~ 116 (231)
T cd02801 49 TRNPEERPLIVQLGGS--------DP---ETLAEAA-KIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVR 116 (231)
T ss_pred ccCccCCCEEEEEcCC--------CH---HHHHHHH-HHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHH
Confidence 3445578999999883 22 3444433 34456799999999765531 123445567777
Q ss_pred HHHHHHh
Q 046015 154 EWRAEVT 160 (352)
Q Consensus 154 ~lr~~l~ 160 (352)
++|+...
T Consensus 117 ~v~~~~~ 123 (231)
T cd02801 117 AVREAVP 123 (231)
T ss_pred HHHHhcC
Confidence 7776654
No 64
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=73.56 E-value=39 Score=30.84 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=37.8
Q ss_pred CcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcC-CCeEEEeecCCCCC-------cchhHHHHHHHHHHHHH
Q 046015 90 SVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYR-FHGLDLHGVLPDKC-------TNMTKLGTLFDEWRAEV 159 (352)
Q Consensus 90 ~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~e~~~~~-------~~~~~~~~~l~~lr~~l 159 (352)
+..++++|+|. ..+.|++ .+..+++.| +|||+|+.--|... ++.+...++++++|+..
T Consensus 91 ~~p~i~si~g~-----------~~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~ 156 (301)
T PRK07259 91 DTPIIANVAGS-----------TEEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV 156 (301)
T ss_pred CCcEEEEeccC-----------CHHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc
Confidence 67899999883 2345554 444567888 99999988544321 23445666666766665
No 65
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.44 E-value=22 Score=33.56 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEE---eCCc--cc---------------------hhhhcC---hhhHHHHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSV---WGGA--IF---------------------SSMINQ---SSNRRSFIKSSIEM 123 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsi---Gg~~--~~---------------------~~~~~~---~~~r~~f~~~i~~~ 123 (352)
.-+.++++++.+|++ |.|+++-| |... .. .+.++. ++..+.|++.. ..
T Consensus 76 ~i~~~~~l~d~vh~~--Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~~ 152 (361)
T cd04747 76 ALAGWKKVVDEVHAA--GGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAA-AD 152 (361)
T ss_pred HHHHHHHHHHHHHhc--CCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHH-HH
Confidence 345577777778877 88888777 2221 00 011111 12334566544 45
Q ss_pred HHHcCCCeEEEeecC
Q 046015 124 ARFYRFHGLDLHGVL 138 (352)
Q Consensus 124 l~~~~~DGidiD~e~ 138 (352)
+++-|||||+|+--.
T Consensus 153 a~~aGfDgVeih~ah 167 (361)
T cd04747 153 ARRLGFDGIELHGAH 167 (361)
T ss_pred HHHcCCCEEEEeccc
Confidence 566799999998654
No 66
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=72.97 E-value=18 Score=33.35 Aligned_cols=94 Identities=12% Similarity=0.056 Sum_probs=53.2
Q ss_pred CcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC-----------CcchhHHHHHHHHHHHH
Q 046015 90 SVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK-----------CTNMTKLGTLFDEWRAE 158 (352)
Q Consensus 90 ~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----------~~~~~~~~~~l~~lr~~ 158 (352)
+..+.+.|.|. |+ +.|++... .+.+.|+|||||+.--|.. ..+.....++++++|+.
T Consensus 62 e~p~~vQl~g~--------~p---~~~~~aA~-~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~ 129 (312)
T PRK10550 62 GTLVRIQLLGQ--------YP---QWLAENAA-RAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREA 129 (312)
T ss_pred CCcEEEEeccC--------CH---HHHHHHHH-HHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHh
Confidence 36788888883 33 34555444 4466799999999887642 13344566777777776
Q ss_pred HhhhhhhcCCceeEEEEEecCCccccccCCChhhhh-c-cCcEEEee
Q 046015 159 VTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQ-R-NLDWIHVL 203 (352)
Q Consensus 159 l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~-~-~vD~i~~m 203 (352)
+.. ++-||+-+...........++.++. + -+|.+.|-
T Consensus 130 ~~~--------~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 130 VPA--------HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred cCC--------CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 632 1346666544322111112233333 2 28888874
No 67
>PLN03244 alpha-amylase; Provisional
Probab=72.45 E-value=50 Score=34.51 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeC----------------Cc--cch--------------hhhcChhhHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVWG----------------GA--IFS--------------SMINQSSNRRSFIKSS 120 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGg----------------~~--~~~--------------~~~~~~~~r~~f~~~i 120 (352)
....++.+++.++++ |++|+|=+=- .. -|. --...+..|+-+++++
T Consensus 439 TPeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna 516 (872)
T PLN03244 439 TPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNL 516 (872)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHH
Confidence 567789999988887 9999976511 00 000 0112346778899999
Q ss_pred HHHHHHcCCCeEEEe
Q 046015 121 IEMARFYRFHGLDLH 135 (352)
Q Consensus 121 ~~~l~~~~~DGidiD 135 (352)
.-|+++|++||+-+|
T Consensus 517 ~yWleEyhIDGFRfD 531 (872)
T PLN03244 517 NWWITEYQIDGFQFH 531 (872)
T ss_pred HHHHHHhCcCcceee
Confidence 999999999999998
No 68
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=70.98 E-value=28 Score=32.93 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEE
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSV 97 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsi 97 (352)
.+.++++.+.+|++ |.|+++-|
T Consensus 78 i~~~~~lad~vH~~--Ga~i~~QL 99 (362)
T PRK10605 78 IAAWKKITAGVHAE--GGHIAVQL 99 (362)
T ss_pred HHHHHHHHHHHHhC--CCEEEEec
Confidence 45677887778877 88988777
No 69
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=70.84 E-value=55 Score=29.77 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=38.4
Q ss_pred CCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCC-------cchhHHHHHHHHHHHHH
Q 046015 89 PSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKC-------TNMTKLGTLFDEWRAEV 159 (352)
Q Consensus 89 ~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~-------~~~~~~~~~l~~lr~~l 159 (352)
.+..++++|+|. ..+.|++ .++.+++.|+|+|+|++-.|... .+.+...++++++|+..
T Consensus 88 ~~~p~ivsi~g~-----------~~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~ 153 (296)
T cd04740 88 FGTPVIASIAGS-----------TVEEFVE-VAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT 153 (296)
T ss_pred CCCcEEEEEecC-----------CHHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc
Confidence 368899999883 2345554 44456778999999998766531 22334556666666654
No 70
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=69.34 E-value=20 Score=33.53 Aligned_cols=122 Identities=11% Similarity=0.101 Sum_probs=67.9
Q ss_pred CccEEEEeeEEEeCCCc----eEee-CCCChHHHHHHHHHHHhcCCCcEEEEEEe--CCc------cchh--------hh
Q 046015 49 LFSNLMCAFAFINSSTY----NIFI-NSTSEQFFVNFTNTVKHRNPSVITLLSVW--GGA------IFSS--------MI 107 (352)
Q Consensus 49 ~~Thi~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~lk~~~~~~kvllsiG--g~~------~~~~--------~~ 107 (352)
.+--|+.....+++.+. .+.+ +++.-..++++++.+|++ |.|+++-|. |.. .... +.
T Consensus 49 G~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~--Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~ 126 (341)
T PF00724_consen 49 GAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH--GAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALP 126 (341)
T ss_dssp TTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT--TSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSS
T ss_pred CCceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc--CccceeeccccccccCcccCCCCccCcccccccC
Confidence 35556666666766542 1112 222345677788788887 899998773 311 0000 00
Q ss_pred ------------cCh----hhHHHHHHHHHHHHHHcCCCeEEEeecCC-------------------CCCcchh-HHHHH
Q 046015 108 ------------NQS----SNRRSFIKSSIEMARFYRFHGLDLHGVLP-------------------DKCTNMT-KLGTL 151 (352)
Q Consensus 108 ------------~~~----~~r~~f~~~i~~~l~~~~~DGidiD~e~~-------------------~~~~~~~-~~~~~ 151 (352)
.+. +..+.|++.... .++-|||||+|+--+- ++.+++. .....
T Consensus 127 ~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~~-A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Ei 205 (341)
T PF00724_consen 127 SPIKFMGYPPREMTEEEIEEIIEDFAQAARR-AKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEI 205 (341)
T ss_dssp TTTTETSCEEEE--HHHHHHHHHHHHHHHHH-HHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHH
T ss_pred cccccCCCCCeeCCHHHHHHHHHHHHHHHHH-HHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHH
Confidence 011 223345555554 4557999999987532 1223333 45577
Q ss_pred HHHHHHHHhhhhhhcCCceeEEEEEecCCc
Q 046015 152 FDEWRAEVTSESRKSGKSQLLLVMTSHHLP 181 (352)
Q Consensus 152 l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~ 181 (352)
++++|+.+... +.|.+.+.+..
T Consensus 206 i~aIr~~vg~d--------~~v~~Rls~~~ 227 (341)
T PF00724_consen 206 IEAIREAVGPD--------FPVGVRLSPDD 227 (341)
T ss_dssp HHHHHHHHTGG--------GEEEEEEETTC
T ss_pred HHHHHHHhcCC--------ceEEEEEeeec
Confidence 88888888654 66777776543
No 71
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=68.48 E-value=17 Score=38.65 Aligned_cols=79 Identities=10% Similarity=0.162 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEE-------eCCc---cchh------------------------hhcChhhHHHHHHHH
Q 046015 75 QFFVNFTNTVKHRNPSVITLLSV-------WGGA---IFSS------------------------MINQSSNRRSFIKSS 120 (352)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsi-------Gg~~---~~~~------------------------~~~~~~~r~~f~~~i 120 (352)
..++++++.++++ |++|++=+ +|.. .+.. ...++.-|+-+++++
T Consensus 404 ~Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl 481 (898)
T TIGR02103 404 KEFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSL 481 (898)
T ss_pred HHHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHH
Confidence 3578888888887 99999755 2210 0000 112356678899999
Q ss_pred HHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhh
Q 046015 121 IEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 121 ~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
.-|+++|++||+-||.-.-. + ..+++++++++++.
T Consensus 482 ~~W~~ey~VDGFRfDlm~~~---~----~~f~~~~~~~l~~i 516 (898)
T TIGR02103 482 VVWAKDYKVDGFRFDLMGHH---P----KAQMLAAREAIKAL 516 (898)
T ss_pred HHHHHHcCCCEEEEechhhC---C----HHHHHHHHHHHHHh
Confidence 99999999999999976332 2 35677777777665
No 72
>PRK03705 glycogen debranching enzyme; Provisional
Probab=68.12 E-value=19 Score=36.87 Aligned_cols=61 Identities=8% Similarity=0.031 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeC-------Cc----c--------------------ch----h-hhcChhhHHHHHH
Q 046015 75 QFFVNFTNTVKHRNPSVITLLSVWG-------GA----I--------------------FS----S-MINQSSNRRSFIK 118 (352)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGg-------~~----~--------------------~~----~-~~~~~~~r~~f~~ 118 (352)
..++.+++.++++ |++|++=+=- .. . +. . -..++..|+-+++
T Consensus 242 ~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid 319 (658)
T PRK03705 242 DEFRDAVKALHKA--GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAID 319 (658)
T ss_pred HHHHHHHHHHHHC--CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHH
Confidence 4688899888887 9999975510 00 0 00 0 1135677888999
Q ss_pred HHHHHHHHcCCCeEEEeec
Q 046015 119 SSIEMARFYRFHGLDLHGV 137 (352)
Q Consensus 119 ~i~~~l~~~~~DGidiD~e 137 (352)
++.-|++++++||.-||--
T Consensus 320 ~l~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 320 CLRYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHHHhCCCEEEEEcH
Confidence 9999999999999999964
No 73
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=67.95 E-value=62 Score=29.58 Aligned_cols=142 Identities=13% Similarity=0.028 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcC-CCeEEEeecCCCC---CcchhHHHHH
Q 046015 76 FFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYR-FHGLDLHGVLPDK---CTNMTKLGTL 151 (352)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~e~~~~---~~~~~~~~~~ 151 (352)
....+++.++++ +..++..+-.+..-.-.+ +.+.-+.+.+.|++-|+..+ +|||-++.-.--. .+|.+ ..|
T Consensus 46 ~~~g~~~~a~~~--g~e~vp~~~a~A~P~G~v-~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~~~D~E--G~L 120 (292)
T PF07364_consen 46 EIGGFLDAAEAQ--GWEVVPLLWAAAEPGGPV-TREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEGYDDGE--GDL 120 (292)
T ss_dssp HHHHHHHHHHHT--T-EEEEEEEEEE-SEE-B--HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS-SSHH--HHH
T ss_pred chHHHHHHHHHC--CCEEEeeEeeeecCCCcc-cHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecCCCCch--HHH
Confidence 356677667666 889998885443111111 34667788899999999987 9999998853321 22333 579
Q ss_pred HHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCChhhhhccCcEEEeeccccCCCCCCchh-------HHhHcCCC
Q 046015 152 FDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLTFDYYLPTRDNFT-------EWLKRGFQ 224 (352)
Q Consensus 152 l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~~~~-------~~~~~g~p 224 (352)
++++|+.+... ..|.+++-... .--+++.+.+|.+...-...|-....... ..+..++.
T Consensus 121 l~rvR~~vGp~--------vpI~~tlDlHa------Nvs~~mv~~ad~~~~yrtyPH~D~~etg~~aa~ll~~~l~g~~r 186 (292)
T PF07364_consen 121 LRRVRAIVGPD--------VPIAATLDLHA------NVSPRMVEAADIIVGYRTYPHIDMYETGERAARLLLRALRGEIR 186 (292)
T ss_dssp HHHHHHHHTTT--------SEEEEEE-TT----------HHHHHH-SEEEE---SS---HHHHHHHHHHHHHHTTT-SS-
T ss_pred HHHHHHHhCCC--------CeEEEEeCCCC------CccHHHHHhCCEEEEcCCCCccCHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999864 34444433221 12357888999885533222321111111 34555677
Q ss_pred Ccceeeecccce
Q 046015 225 AKKLVLGLPYHG 236 (352)
Q Consensus 225 ~~Kivlglp~yG 236 (352)
|.+...-+|+-.
T Consensus 187 p~~a~~~~P~l~ 198 (292)
T PF07364_consen 187 PVMALRRLPMLL 198 (292)
T ss_dssp -EEEEEEE-B--
T ss_pred ceEEEecCCeEc
Confidence 788777777744
No 74
>PLN02877 alpha-amylase/limit dextrinase
Probab=67.67 E-value=40 Score=36.06 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEEE-------eC-Cc---cchh-----------------------h-hcChhhHHHHHHHH
Q 046015 76 FFVNFTNTVKHRNPSVITLLSV-------WG-GA---IFSS-----------------------M-INQSSNRRSFIKSS 120 (352)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsi-------Gg-~~---~~~~-----------------------~-~~~~~~r~~f~~~i 120 (352)
.++.+++.++++ |++|++=+ +| +. .+.. . ..++.-|+-+++++
T Consensus 467 efk~mV~~lH~~--GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl 544 (970)
T PLN02877 467 EFRKMVQALNRI--GLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDL 544 (970)
T ss_pred HHHHHHHHHHHC--CCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHH
Confidence 478888888877 99999765 11 10 0100 0 11234567789999
Q ss_pred HHHHHHcCCCeEEEeecCCC
Q 046015 121 IEMARFYRFHGLDLHGVLPD 140 (352)
Q Consensus 121 ~~~l~~~~~DGidiD~e~~~ 140 (352)
.-|+++|++||.-+|.-..-
T Consensus 545 ~yW~~ey~VDGFRFDlmg~i 564 (970)
T PLN02877 545 LNWAVNYKVDGFRFDLMGHL 564 (970)
T ss_pred HHHHHHhCCCEEEEEccccc
Confidence 99999999999999987544
No 75
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=67.60 E-value=25 Score=31.52 Aligned_cols=53 Identities=9% Similarity=-0.029 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCC
Q 046015 75 QFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPD 140 (352)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~ 140 (352)
+..+++++.+|++ |+|+++.+- +..|+=+.+.+.+++.+.|+||+=+|.-.|.
T Consensus 66 pdp~~~i~~l~~~--g~~~~~~~~-----------P~v~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 66 PNPKSMIDELHDN--GVKLVLWID-----------PYIREWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred CCHHHHHHHHHHC--CCEEEEEeC-----------hhHHHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 3456788888887 999999873 3447778787877778899999999987664
No 76
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=67.52 E-value=43 Score=30.26 Aligned_cols=75 Identities=5% Similarity=0.106 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEeCCc--cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHH
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSVWGGA--IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTL 151 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiGg~~--~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~ 151 (352)
...+.++++-+|++ |++|+|-.-... +... ..+. .+...+.+++.|..||-+||-. .+.+..+.+
T Consensus 72 ~~dl~elv~Ya~~K--gVgi~lw~~~~~~~~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~~----~d~Q~~v~~ 138 (273)
T PF10566_consen 72 DFDLPELVDYAKEK--GVGIWLWYHSETGGNVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFMD----RDDQEMVNW 138 (273)
T ss_dssp T--HHHHHHHHHHT--T-EEEEEEECCHTTBHHH------HHCC-HHHHHHHHHHCTEEEEEEE--S----STSHHHHHH
T ss_pred ccCHHHHHHHHHHc--CCCEEEEEeCCcchhhHh------HHHH-HHHHHHHHHHcCCCEEeeCcCC----CCCHHHHHH
Confidence 45578888888888 899998774432 1111 2223 3888889999999999999983 344555566
Q ss_pred HHHHHHHHhh
Q 046015 152 FDEWRAEVTS 161 (352)
Q Consensus 152 l~~lr~~l~~ 161 (352)
.+++-+...+
T Consensus 139 y~~i~~~AA~ 148 (273)
T PF10566_consen 139 YEDILEDAAE 148 (273)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 77
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=67.29 E-value=22 Score=36.75 Aligned_cols=82 Identities=10% Similarity=0.068 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEe-------CC----------c--cch-------------------hhhcChhhHHH
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSVW-------GG----------A--IFS-------------------SMINQSSNRRS 115 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiG-------g~----------~--~~~-------------------~~~~~~~~r~~ 115 (352)
...++.+++.+|++ |++|++=+= +. . .+. --..++..|+-
T Consensus 244 ~~efk~LV~~~H~~--GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~ 321 (688)
T TIGR02100 244 VAEFKTMVRALHDA--GIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQM 321 (688)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHH
Confidence 45688999888888 999997651 00 0 000 01124566888
Q ss_pred HHHHHHHHHHHcCCCeEEEeecCCCCC--cchhHHHHHHHHHHH
Q 046015 116 FIKSSIEMARFYRFHGLDLHGVLPDKC--TNMTKLGTLFDEWRA 157 (352)
Q Consensus 116 f~~~i~~~l~~~~~DGidiD~e~~~~~--~~~~~~~~~l~~lr~ 157 (352)
+++++.-|++++++||+-||.-.--.. ........|+++++.
T Consensus 322 i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~~~~~~~~~~~i~~ 365 (688)
T TIGR02100 322 VMDSLRYWVTEMHVDGFRFDLATTLGRELYGFDMLSGFFTAIRQ 365 (688)
T ss_pred HHHHHHHHHHHcCCcEEEEechhhhccccCCCcccHHHHHHHHh
Confidence 889999999999999999997532111 111223456677665
No 78
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=67.01 E-value=30 Score=35.49 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCceeEEEE-EecCCc------cccccCCChhhhhccCcEEEeeccccCCCCCC-chhHH
Q 046015 147 KLGTLFDEWRAEVTSESRKSGKSQLLLVM-TSHHLP------ALESVSYPLDSMQRNLDWIHVLTFDYYLPTRD-NFTEW 218 (352)
Q Consensus 147 ~~~~~l~~lr~~l~~~~~~~~~~~~~ls~-~~~~~~------~~~~~~~d~~~l~~~vD~i~~m~yd~~~~~~~-~~~~~ 218 (352)
.+..|-.+|.+..+... .+. +.|+ -+.+.+ ..|- .-++....+..||+.+|+.-+...-.. ....|
T Consensus 513 ~l~~f~~~l~~~v~~~~----~~~-~~tarni~a~~~l~p~~e~w~-aQ~l~~~~~~yD~~a~mampyme~~~~~~~~~w 586 (671)
T PRK14582 513 ALTDFTLELSARVKAIR----GPQ-VKTARNIFALPVIQPESEAWF-AQNLDDFLKSYDWTAPMAMPLMEGVAEKSSDAW 586 (671)
T ss_pred HHHHHHHHHHHHHHhhc----Ccc-ceeeccccccccCChhHHHHH-HhHHHHHHhhcchhhhhcchhhhccCcccHHHH
Confidence 45688888888888752 112 2222 122211 1111 135677888999999999554433222 22345
Q ss_pred hHc--------CCCCcceeeecccceeeee
Q 046015 219 LKR--------GFQAKKLVLGLPYHGYAWT 240 (352)
Q Consensus 219 ~~~--------g~p~~Kivlglp~yG~~~~ 240 (352)
+.. -...+|+|+-+.. ++|+
T Consensus 587 l~~l~~~v~~~~~~~~k~vfelq~--~dw~ 614 (671)
T PRK14582 587 LIQLVNQVKNIPGALDKTIFELQA--RDWQ 614 (671)
T ss_pred HHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 432 2356899988866 4553
No 79
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=66.96 E-value=53 Score=30.33 Aligned_cols=44 Identities=7% Similarity=0.096 Sum_probs=29.1
Q ss_pred HhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCC
Q 046015 85 KHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPD 140 (352)
Q Consensus 85 k~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~ 140 (352)
+....+..+.+.|+|. ++ +.|++. +..+++.|+|||||+.--|.
T Consensus 57 ~~~~~~~p~i~ql~g~--------~~---~~~~~a-a~~~~~~G~d~IelN~gcP~ 100 (319)
T TIGR00737 57 DIAEDETPISVQLFGS--------DP---DTMAEA-AKINEELGADIIDINMGCPV 100 (319)
T ss_pred hcCCccceEEEEEeCC--------CH---HHHHHH-HHHHHhCCCCEEEEECCCCH
Confidence 3334467788999883 33 344443 33557789999999987663
No 80
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=66.56 E-value=27 Score=30.75 Aligned_cols=136 Identities=9% Similarity=0.097 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHH
Q 046015 75 QFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDE 154 (352)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~ 154 (352)
..+++.++.+|++ +++ ++.||+ -|..+. .+.-++.-++.+++.|||.|+|.--... -..+....+++.
T Consensus 41 ~~l~eki~la~~~--~V~--v~~GGt-l~E~~~-----~q~~~~~Yl~~~k~lGf~~IEiS~G~~~--i~~~~~~rlI~~ 108 (237)
T TIGR03849 41 DIVKEKIEMYKDY--GIK--VYPGGT-LFEIAH-----SKGKFDEYLNECDELGFEAVEISDGSME--ISLEERCNLIER 108 (237)
T ss_pred HHHHHHHHHHHHc--CCe--EeCCcc-HHHHHH-----HhhhHHHHHHHHHHcCCCEEEEcCCccC--CCHHHHHHHHHH
Confidence 3566666666665 554 557774 233222 3356777788999999999999654332 122333444444
Q ss_pred HHHH-HhhhhhhcCCceeEEEEEecCCccccccCCCh--------hhhhccCcEEEeec---------cccCCCCCCchh
Q 046015 155 WRAE-VTSESRKSGKSQLLLVMTSHHLPALESVSYPL--------DSMQRNLDWIHVLT---------FDYYLPTRDNFT 216 (352)
Q Consensus 155 lr~~-l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~--------~~l~~~vD~i~~m~---------yd~~~~~~~~~~ 216 (352)
.++. |... ..+..-.+.. .. ..+. ..|..-+|+|.+.+ ||..|+|....-
T Consensus 109 ~~~~g~~v~--------~EvG~K~~~~-~~---~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v 176 (237)
T TIGR03849 109 AKDNGFMVL--------SEVGKKSPEK-DS---ELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDEL 176 (237)
T ss_pred HHhCCCeEe--------ccccccCCcc-cc---cCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHH
Confidence 4422 1110 0000000100 00 1111 12445689999988 555555554433
Q ss_pred HHhHcCCCCcceeeeccc
Q 046015 217 EWLKRGFQAKKLVLGLPY 234 (352)
Q Consensus 217 ~~~~~g~p~~Kivlglp~ 234 (352)
.-+...+|++||+.--|.
T Consensus 177 ~~i~~~l~~eklifEAp~ 194 (237)
T TIGR03849 177 DVLAENVDINKVIFEAPQ 194 (237)
T ss_pred HHHHhhCChhcEEEECCC
Confidence 333447899999977664
No 81
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=66.01 E-value=51 Score=31.43 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEeC-CccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSVWG-GAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK 141 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiGg-~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~ 141 (352)
.+.+.+.+..+|++.|++.|++||.| . + .+.+.+ +++.+++.|.|+++|++-.|..
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~--------s---~~~~~~-~a~~~e~~GaD~iELNiSCPn~ 153 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEY--------N---KDAWEE-IIERVEETGVDALEINFSCPHG 153 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCC--------C---HHHHHH-HHHHHHhcCCCEEEEECCCCCC
Confidence 33444444567766778899999954 2 1 222222 2334567799999999987754
No 82
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=65.78 E-value=37 Score=31.75 Aligned_cols=86 Identities=8% Similarity=0.111 Sum_probs=47.5
Q ss_pred CccEEEEeeEEEeCCCce----E-eeCCCChHHHHHHHHHHHhcCCCcEEEEEEe--CCc-cc-------h---------
Q 046015 49 LFSNLMCAFAFINSSTYN----I-FINSTSEQFFVNFTNTVKHRNPSVITLLSVW--GGA-IF-------S--------- 104 (352)
Q Consensus 49 ~~Thi~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~lk~~~~~~kvllsiG--g~~-~~-------~--------- 104 (352)
.+.-|+.....+++.+.. + ..+++.-+.++++++.+|++ |.++++-|. |.. .. +
T Consensus 50 G~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~--G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~ 127 (337)
T PRK13523 50 QVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH--GAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSK 127 (337)
T ss_pred CCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc--CCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCC
Confidence 345555555556554321 1 12222346677787778876 888887772 211 10 0
Q ss_pred --hhhcC---hhhHHHHHHHHHHHHHHcCCCeEEEeec
Q 046015 105 --SMINQ---SSNRRSFIKSSIEMARFYRFHGLDLHGV 137 (352)
Q Consensus 105 --~~~~~---~~~r~~f~~~i~~~l~~~~~DGidiD~e 137 (352)
+.++. ++..+.|++.. ..+++-|||||+|+--
T Consensus 128 ~p~~mt~eeI~~ii~~f~~aA-~~a~~aGfDgVeih~a 164 (337)
T PRK13523 128 TPVEMTKEQIKETVLAFKQAA-VRAKEAGFDVIEIHGA 164 (337)
T ss_pred CCCcCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEccc
Confidence 11111 13345677655 4556679999999866
No 83
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=64.35 E-value=41 Score=31.91 Aligned_cols=86 Identities=12% Similarity=0.135 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCc---------cc-----hhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCC
Q 046015 75 QFFVNFTNTVKHRNPSVITLLSVWGGA---------IF-----SSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPD 140 (352)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGg~~---------~~-----~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~ 140 (352)
..-+.|++.+|++ |+..++++.... .. ..-+ .+...+.|++-++++++.+.=.||.|++-.|-
T Consensus 104 ~gQrwfL~~Ak~r--GV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NL-k~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~ 180 (384)
T PF14587_consen 104 AGQRWFLKAAKER--GVNIFEAFSNSPPWWMTKNGSASGGDDGSDNL-KPDNYDAFADYLADVVKHYKKWGINFDYISPF 180 (384)
T ss_dssp HHHHHHHHHHHHT--T---EEEE-SSS-GGGSSSSSSB-S-SSS-SS--TT-HHHHHHHHHHHHHHHHCTT--EEEEE--
T ss_pred HHHHHHHHHHHHc--CCCeEEEeecCCCHHHhcCCCCCCCCcccccc-ChhHHHHHHHHHHHHHHHHHhcCCccceeCCc
Confidence 4455677777776 898888886533 00 1112 24678889998888888887789999874442
Q ss_pred C--------------CcchhHHHHHHHHHHHHHhhhh
Q 046015 141 K--------------CTNMTKLGTLFDEWRAEVTSES 163 (352)
Q Consensus 141 ~--------------~~~~~~~~~~l~~lr~~l~~~~ 163 (352)
+ +-+.+....|++.|+.+|.+.+
T Consensus 181 NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~G 217 (384)
T PF14587_consen 181 NEPQWNWAGGSQEGCHFTNEEQADVIRALDKALKKRG 217 (384)
T ss_dssp S-TTS-GG--SS-B----HHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 1 1234567899999999999875
No 84
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=64.33 E-value=73 Score=29.12 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCC----------cchh
Q 046015 77 FVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKC----------TNMT 146 (352)
Q Consensus 77 ~~~~~~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~----------~~~~ 146 (352)
+.+.+..+++..++..+++++.|. ...+.+++ +++.+++.++|+|+|++-.|... ++.+
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~G~----------~~~~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~ 154 (299)
T cd02940 86 WLKEIRELKKDFPDKILIASIMCE----------YNKEDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPE 154 (299)
T ss_pred HHHHHHHHHhhCCCCeEEEEecCC----------CCHHHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHH
Confidence 333333455544467788999772 12244444 34455677899999999877631 3445
Q ss_pred HHHHHHHHHHHHH
Q 046015 147 KLGTLFDEWRAEV 159 (352)
Q Consensus 147 ~~~~~l~~lr~~l 159 (352)
.+.++++.+|+..
T Consensus 155 ~~~~iv~~v~~~~ 167 (299)
T cd02940 155 LVEEICRWVREAV 167 (299)
T ss_pred HHHHHHHHHHHhc
Confidence 5666777776654
No 85
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=64.22 E-value=11 Score=27.11 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=28.8
Q ss_pred cchhhhcC-hhhHHHHHHHHHHHHHHcCCCeEEEeec
Q 046015 102 IFSSMINQ-SSNRRSFIKSSIEMARFYRFHGLDLHGV 137 (352)
Q Consensus 102 ~~~~~~~~-~~~r~~f~~~i~~~l~~~~~DGidiD~e 137 (352)
.+.....+ +.-|+.+++.+++.+..-.+|||-+|--
T Consensus 40 ~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 40 HYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred eeeeccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 34444444 8999999999999999888999998853
No 86
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=63.93 E-value=25 Score=35.77 Aligned_cols=77 Identities=16% Similarity=0.068 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCcEEEEEEe---CCc--cchhhhcChhhHHHHHHHHHHHH----HHcCCCeEEEeecCCCCCcchhHHH
Q 046015 79 NFTNTVKHRNPSVITLLSVW---GGA--IFSSMINQSSNRRSFIKSSIEMA----RFYRFHGLDLHGVLPDKCTNMTKLG 149 (352)
Q Consensus 79 ~~~~~lk~~~~~~kvllsiG---g~~--~~~~~~~~~~~r~~f~~~i~~~l----~~~~~DGidiD~e~~~~~~~~~~~~ 149 (352)
.+++.+|++||++|+...=- ||- .+...-.++ +.-+.-++++| +.| |++||+-.+- .++..=.
T Consensus 116 ~L~~eAKkrNP~ikl~~L~W~~PgW~~~g~~~~~~~~---~~~a~Y~~~wl~ga~~~~---gl~idYvg~~--NEr~~~~ 187 (669)
T PF02057_consen 116 WLMAEAKKRNPNIKLYGLPWGFPGWVGNGWNWPYDNP---QLTAYYVVSWLLGAKKTH---GLDIDYVGIW--NERGFDV 187 (669)
T ss_dssp HHHHHHHHH-TT-EEEEEES-B-GGGGTTSS-TTSSH---HHHHHHHHHHHHHHHHHH--------EE-S---TTS---H
T ss_pred hhHHHHHhhCCCCeEEEeccCCCccccCCCCCcccch---hhhhHHHHHHHHHHHHHh---CCCceEechh--hccCCCh
Confidence 45568999999999884332 232 221111111 12222344544 555 5677776542 3333345
Q ss_pred HHHHHHHHHHhhhh
Q 046015 150 TLFDEWRAEVTSES 163 (352)
Q Consensus 150 ~~l~~lr~~l~~~~ 163 (352)
..+|.||..+++.+
T Consensus 188 ~~ik~lr~~l~~~g 201 (669)
T PF02057_consen 188 NYIKWLRKALNSNG 201 (669)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhcc
Confidence 78899999998764
No 87
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=63.08 E-value=1e+02 Score=28.13 Aligned_cols=79 Identities=10% Similarity=0.144 Sum_probs=46.3
Q ss_pred eCCCChHHHHHHHHHHHhc--CCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHc--CCCeEEEeecCCCC---
Q 046015 69 INSTSEQFFVNFTNTVKHR--NPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFY--RFHGLDLHGVLPDK--- 141 (352)
Q Consensus 69 ~~~~~~~~~~~~~~~lk~~--~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~--~~DGidiD~e~~~~--- 141 (352)
+++...+.+.+.++.+++. .++..+++||+|. .+.+++.+..+.+.. +.|+|+|+.--|..
T Consensus 68 ~~n~g~~~~~~~i~~~~~~~~~~~~pvivsi~g~------------~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~ 135 (294)
T cd04741 68 LPNLGLDYYLEYIRTISDGLPGSAKPFFISVTGS------------AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK 135 (294)
T ss_pred CCCcCHHHHHHHHHHHhhhccccCCeEEEECCCC------------HHHHHHHHHHHHhhccccccEEEEECCCCCCCCc
Confidence 3444444444444334432 2467889999871 344554444443333 68999999987753
Q ss_pred ---CcchhHHHHHHHHHHHHH
Q 046015 142 ---CTNMTKLGTLFDEWRAEV 159 (352)
Q Consensus 142 ---~~~~~~~~~~l~~lr~~l 159 (352)
..+.+.+.++++.+++..
T Consensus 136 ~~~~~~~~~~~~i~~~v~~~~ 156 (294)
T cd04741 136 PPPAYDFDATLEYLTAVKAAY 156 (294)
T ss_pred ccccCCHHHHHHHHHHHHHhc
Confidence 124556777777777765
No 88
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=62.28 E-value=82 Score=30.33 Aligned_cols=67 Identities=10% Similarity=0.025 Sum_probs=42.2
Q ss_pred HHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCC----------cchhHHHHH
Q 046015 82 NTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKC----------TNMTKLGTL 151 (352)
Q Consensus 82 ~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~----------~~~~~~~~~ 151 (352)
+.+++..++..++++|.|.. + .+.++ ..+..+++.+.|+|+|+.-.|... ++.+.+.++
T Consensus 91 ~~~~~~~~~~p~i~si~g~~-------~---~~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i 159 (420)
T PRK08318 91 RRVKRDYPDRALIASIMVEC-------N---EEEWK-EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMY 159 (420)
T ss_pred HHHHhhCCCceEEEEeccCC-------C---HHHHH-HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHH
Confidence 34554445567889998720 1 22333 344555777899999999887521 345566677
Q ss_pred HHHHHHHH
Q 046015 152 FDEWRAEV 159 (352)
Q Consensus 152 l~~lr~~l 159 (352)
++++++..
T Consensus 160 ~~~v~~~~ 167 (420)
T PRK08318 160 TRWVKRGS 167 (420)
T ss_pred HHHHHhcc
Confidence 77776654
No 89
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=62.22 E-value=1.7e+02 Score=30.22 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=98.7
Q ss_pred CCccEEEE-eeEEEeCCCc--eEeeCCCC----hHHHHHHHHHHHhcCCCcEEEEEE--eCCc---------cc------
Q 046015 48 ALFSNLMC-AFAFINSSTY--NIFINSTS----EQFFVNFTNTVKHRNPSVITLLSV--WGGA---------IF------ 103 (352)
Q Consensus 48 ~~~Thi~~-~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~lk~~~~~~kvllsi--Gg~~---------~~------ 103 (352)
-..+||.+ +|+..+++|. .+.+++.. .+.+....=.++.+. ++||.... -++. .+
T Consensus 346 ~~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~ 424 (672)
T PRK14581 346 LRVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDMDPSLPRITRIDPKTGK 424 (672)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccCCcccchhhhcccccCc
Confidence 34789988 4555555553 25566653 344555532466554 78887333 2332 00
Q ss_pred --------hhhh-cChhhHHHHHHHHHHHHHHc-CCCeEEEeec-------CCC--------------C-------Cc--
Q 046015 104 --------SSMI-NQSSNRRSFIKSSIEMARFY-RFHGLDLHGV-------LPD--------------K-------CT-- 143 (352)
Q Consensus 104 --------~~~~-~~~~~r~~f~~~i~~~l~~~-~~DGidiD~e-------~~~--------------~-------~~-- 143 (352)
.++. -++ ...+.|.+|..=|-+| .||||-++-+ -.. + ++
T Consensus 425 ~~~~~~~y~rlspf~~-~~~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~ 503 (672)
T PRK14581 425 TSIDPDQYRRLSPFNP-EVRQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMM 503 (672)
T ss_pred cccCCCCccccCCCCH-HHHHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHH
Confidence 0000 022 2235788888888887 7999988543 111 0 00
Q ss_pred ------chhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCc------cccccCCChhhhhccCcEEEeeccccCCCC
Q 046015 144 ------NMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLP------ALESVSYPLDSMQRNLDWIHVLTFDYYLPT 211 (352)
Q Consensus 144 ------~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~------~~~~~~~d~~~l~~~vD~i~~m~yd~~~~~ 211 (352)
..+.+..|..+|++..+... .+.+...-.+.+.+ ..|- .-++....+..||+.+|+|-+-..-
T Consensus 504 ~~w~~~k~~~l~~f~~~l~~~v~~~~----~p~~~tarniya~~~l~p~~~~w~-aQ~l~~~~~~yD~~a~mamp~me~~ 578 (672)
T PRK14581 504 QRWTRYKSKYLIDFTNELTREVRDIR----GPQVKSARNIFAMPILEPESEAWF-AQNLDDFLANYDWVAPMAMPLMEKV 578 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc----CccceehhcccccccCChhHHHHH-HhHHHHHHhhcchhHHhhchhhhcc
Confidence 22356788889988887642 11221111122111 1111 1356778889999999999754322
Q ss_pred C-CchhHHhHc--------CCCCcceeeecccceeeee
Q 046015 212 R-DNFTEWLKR--------GFQAKKLVLGLPYHGYAWT 240 (352)
Q Consensus 212 ~-~~~~~~~~~--------g~p~~Kivlglp~yG~~~~ 240 (352)
. +....|+.. -...+|+|+-+.. ++|+
T Consensus 579 ~~~~~~~w~~~l~~~v~~~~~~~~k~vfelQ~--~dw~ 614 (672)
T PRK14581 579 PLSESNEWLAELVNKVAQRPGALEKTVFELQS--KDWT 614 (672)
T ss_pred ccccHHHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 2 222344431 2246899988865 4553
No 90
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=62.14 E-value=62 Score=30.11 Aligned_cols=77 Identities=8% Similarity=0.079 Sum_probs=44.9
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcc-----
Q 046015 70 NSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTN----- 144 (352)
Q Consensus 70 ~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~----- 144 (352)
++...+.+.+.+..++++. ++.++++|+|. +. +.++ .++..+++.|+|+|+|++-.|....+
T Consensus 82 ~n~g~d~~~~~i~~~~~~~-~~pvi~sI~g~--------~~---~e~~-~~a~~~~~agad~ielN~scpp~~~~~~g~~ 148 (334)
T PRK07565 82 FYVGPEEYLELIRRAKEAV-DIPVIASLNGS--------SA---GGWV-DYARQIEQAGADALELNIYYLPTDPDISGAE 148 (334)
T ss_pred cCcCHHHHHHHHHHHHHhc-CCcEEEEeccC--------CH---HHHH-HHHHHHHHcCCCEEEEeCCCCCCCCCCcccc
Confidence 3444445555554455433 68899999883 11 2333 45555677799999999865432111
Q ss_pred -hhHHHHHHHHHHHHH
Q 046015 145 -MTKLGTLFDEWRAEV 159 (352)
Q Consensus 145 -~~~~~~~l~~lr~~l 159 (352)
.+.+.++++++++..
T Consensus 149 ~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 149 VEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 123556667766654
No 91
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=61.92 E-value=73 Score=29.34 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=47.2
Q ss_pred eCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcC-CCeEEEeecCCCCC-----
Q 046015 69 INSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYR-FHGLDLHGVLPDKC----- 142 (352)
Q Consensus 69 ~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~e~~~~~----- 142 (352)
+++...+.+.+.+..+++..++..+++||-|.+ . +.+. .+++.++..+ .|.|+|+.--|..+
T Consensus 71 l~n~g~~~~~~~i~~~~~~~~~~pvI~Si~G~~--------~---~~~~-~~a~~~~~~g~ad~iElN~ScPn~~~~~~~ 138 (310)
T PRK02506 71 LPNLGFDYYLDYVLELQKKGPNKPHFLSVVGLS--------P---EETH-TILKKIQASDFNGLVELNLSCPNVPGKPQI 138 (310)
T ss_pred CCCcCHHHHHHHHHHHHhhcCCCCEEEEEEeCc--------H---HHHH-HHHHHHhhcCCCCEEEEECCCCCCCCcccc
Confidence 444444444444445555545688899987742 1 2222 3334456777 79999999877421
Q ss_pred -cchhHHHHHHHHHHHHHh
Q 046015 143 -TNMTKLGTLFDEWRAEVT 160 (352)
Q Consensus 143 -~~~~~~~~~l~~lr~~l~ 160 (352)
.+.+.+.++++.+|+..+
T Consensus 139 g~d~~~~~~i~~~v~~~~~ 157 (310)
T PRK02506 139 AYDFETTEQILEEVFTYFT 157 (310)
T ss_pred ccCHHHHHHHHHHHHHhcC
Confidence 234556677777776553
No 92
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=60.36 E-value=51 Score=30.47 Aligned_cols=71 Identities=10% Similarity=0.027 Sum_probs=46.9
Q ss_pred eEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeC------------------------------Cc---cchhhhcChhh
Q 046015 66 NIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWG------------------------------GA---IFSSMINQSSN 112 (352)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg------------------------------~~---~~~~~~~~~~~ 112 (352)
...++.+.-+...++++.|+++ |+||++.+-- |. .+-. ..+++.
T Consensus 57 ~f~~d~~~FPdp~~mi~~L~~~--G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~D-ftnp~a 133 (319)
T cd06591 57 EWKFDPERFPDPKAMVRELHEM--NAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYD-ATNPEA 133 (319)
T ss_pred eEEEChhhCCCHHHHHHHHHHC--CCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccC-CCCHHH
Confidence 3444433223356777788877 8999876611 00 1111 236677
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeecCC
Q 046015 113 RRSFIKSSIEMARFYRFHGLDLHGVLP 139 (352)
Q Consensus 113 r~~f~~~i~~~l~~~~~DGidiD~e~~ 139 (352)
|+-+.+.+.+.+.+.|+||+=+|.-.|
T Consensus 134 ~~w~~~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 134 REYYWKQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 888888888888899999999998654
No 93
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.34 E-value=32 Score=28.73 Aligned_cols=180 Identities=17% Similarity=0.100 Sum_probs=96.5
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCC
Q 046015 109 QSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSY 188 (352)
Q Consensus 109 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~ 188 (352)
+|-+|+.-+..+ +-|.|=| |-..|..-+=..||.-.|+++|+..+.. ..+|.++.--|.... .-
T Consensus 6 SPin~eEA~eAi-----eGGAdIi--DVKNP~EGSLGANFPWvIr~i~Ev~p~d--------~~vSAT~GDvpYKPG-T~ 69 (235)
T COG1891 6 SPINREEAIEAI-----EGGADII--DVKNPAEGSLGANFPWVIREIREVVPED--------QEVSATVGDVPYKPG-TA 69 (235)
T ss_pred ccCCHHHHHHHh-----hCCCceE--eccCcccCcccCCChHHHHHHHHhCccc--------eeeeeeecCCCCCCc-hH
Confidence 345555544433 2345544 4466643344579999999999998754 578888764333222 12
Q ss_pred Chhhh---hccCcEEEeeccccCCCCCCchh----HHhHcCCCCcceeeecccceeeeeecCCCCCCCCCCCCCCCCCCC
Q 046015 189 PLDSM---QRNLDWIHVLTFDYYLPTRDNFT----EWLKRGFQAKKLVLGLPYHGYAWTLVNPDENPVGSPATGPAITID 261 (352)
Q Consensus 189 d~~~l---~~~vD~i~~m~yd~~~~~~~~~~----~~~~~g~p~~Kivlglp~yG~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (352)
.++.+ ..-+|||-+--|+..+......- .-...-+.++|+|+. .-|+-.+..
T Consensus 70 slAalGaav~GaDYiKVGLYg~kn~~eA~e~m~~vvrAVkd~d~~k~VVA-aGYaDa~Rv-------------------- 128 (235)
T COG1891 70 SLAALGAAVAGADYIKVGLYGTKNEEEALEVMKNVVRAVKDFDPSKKVVA-AGYADAHRV-------------------- 128 (235)
T ss_pred HHHHHHhHhhCCceEEEeecccccHHHHHHHHHHHHHHHhccCCCceEEe-ccccchhhc--------------------
Confidence 23333 34589999988875432111000 111235778888876 334432321
Q ss_pred ccccHHHHHhhhhcCCCceeEEEeccceeEEEE-eCCEEEEeCcHHHHHHHHHHHHhcCCceEEEEeccCCC
Q 046015 262 GSVGYKFIKGFIRDYGYGAASVYNHSYVMNFFS-AKTTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD 332 (352)
Q Consensus 262 g~~~y~~i~~~~~~~~~~~~~~~d~~~~~~y~~-~~~~~i~ydd~~S~~~K~~~~~~~~l~Gi~~W~l~~Dd 332 (352)
|.++--.+.+...+.| ..+.- ..-.. +++...-|.+.+-+..-.+.++++||--...=+|..++
T Consensus 129 gsv~Pl~~P~vaa~ag--~DvaM-----vDTaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlAGs~~~eh 193 (235)
T COG1891 129 GSVSPLLLPEVAAEAG--ADVAM-----VDTAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVALAGSLKFEH 193 (235)
T ss_pred cCcCccccHHHHHhcC--CCEEE-----EecccccchhHHhhhcHHHHHHHHHHHHHcchHHHhcccccccc
Confidence 1222222333333333 11110 01111 44555678999999999999999998443333444443
No 94
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=57.42 E-value=54 Score=25.99 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCc-cchhhhc-ChhhHHHHHHHHHHHHHHcCCCeEEE
Q 046015 75 QFFVNFTNTVKHRNPSVITLLSVWGGA-IFSSMIN-QSSNRRSFIKSSIEMARFYRFHGLDL 134 (352)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGg~~-~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidi 134 (352)
..+.-+++.+++. |+++++-|---. .|..-.. +.+.|+.+.+.|...++++||.=+|+
T Consensus 36 ~Dl~l~L~~~k~~--g~~~lfVi~PvNg~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 36 DDLQLLLDVCKEL--GIDVLFVIQPVNGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHHHT--T-EEEEEE----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHHHc--CCceEEEecCCcHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 4466667778877 899987764433 3333322 67899999999999999999965555
No 95
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=56.90 E-value=31 Score=33.05 Aligned_cols=110 Identities=10% Similarity=-0.025 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEE-----eCCc-------cc----------------hhhhcChhhHHHHHHHHHHHHH
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSV-----WGGA-------IF----------------SSMINQSSNRRSFIKSSIEMAR 125 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsi-----Gg~~-------~~----------------~~~~~~~~~r~~f~~~i~~~l~ 125 (352)
...++.+++.++++ |+|.=|-+ +-.+ .+ .--+++++.|+-+.+.+.++++
T Consensus 103 P~Gl~~l~~~i~~~--Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~ 180 (394)
T PF02065_consen 103 PNGLKPLADYIHSL--GMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLR 180 (394)
T ss_dssp TTHHHHHHHHHHHT--T-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHC--CCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHH
Confidence 34588888888877 88877666 2111 01 0113467778888899999999
Q ss_pred HcCCCeEEEeecCCCC----Cc---chh----HHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCChhhhh
Q 046015 126 FYRFHGLDLHGVLPDK----CT---NMT----KLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQ 194 (352)
Q Consensus 126 ~~~~DGidiD~e~~~~----~~---~~~----~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~ 194 (352)
++|+|.|-+|+..... +. ... .+-.++++||++++ ++++...... ..+.|+ .+.
T Consensus 181 ~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P---------~v~iE~CssG-----G~R~D~-g~l 245 (394)
T PF02065_consen 181 EWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFP---------DVLIENCSSG-----GGRFDP-GML 245 (394)
T ss_dssp HTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTT---------TSEEEE-BTT-----BTTTSH-HHH
T ss_pred hcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCC---------CcEEEeccCC-----CCcccc-chh
Confidence 9999999999975321 11 112 34457777777776 4566665332 223674 566
Q ss_pred ccCcEE
Q 046015 195 RNLDWI 200 (352)
Q Consensus 195 ~~vD~i 200 (352)
.+.+.+
T Consensus 246 ~~~~~~ 251 (394)
T PF02065_consen 246 YYTPQS 251 (394)
T ss_dssp CCSSEE
T ss_pred eecccc
Confidence 777766
No 96
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=53.11 E-value=1.2e+02 Score=28.83 Aligned_cols=112 Identities=11% Similarity=0.067 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEeCCc------------------cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEe
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSVWGGA------------------IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLH 135 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiGg~~------------------~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD 135 (352)
+..-..+++.+|++.|++++. .+||.. +|..++..--.-.+..+.+++.+++..-|-+.+
T Consensus 11 D~~ga~Li~~Lk~~~p~~~~~-GvGG~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIl- 88 (373)
T PF02684_consen 11 DLHGARLIRALKARDPDIEFY-GVGGPRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVIL- 88 (373)
T ss_pred HHHHHHHHHHHHhhCCCcEEE-EEechHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE-
Confidence 334567888999999988765 788743 344444333344467788999999999996643
Q ss_pred ecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCChhhhhccCcEEEee
Q 046015 136 GVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVL 203 (352)
Q Consensus 136 ~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~m 203 (352)
..+|+ .=..+.+.+|+.--. .-+.--++|..+-|. ..-...+.+++|.+...
T Consensus 89 ID~pg------FNlrlak~lk~~~~~---------~~viyYI~PqvWAWr-~~R~~~i~~~~D~ll~i 140 (373)
T PF02684_consen 89 IDYPG------FNLRLAKKLKKRGIP---------IKVIYYISPQVWAWR-PGRAKKIKKYVDHLLVI 140 (373)
T ss_pred eCCCC------ccHHHHHHHHHhCCC---------ceEEEEECCceeeeC-ccHHHHHHHHHhheeEC
Confidence 33343 113556666554321 124444556666666 34578899999998654
No 97
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=52.82 E-value=1.6e+02 Score=27.54 Aligned_cols=85 Identities=11% Similarity=0.030 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeCCc----cchhhhcC--------hh-----hHHHHHHHHHHHHHHcCCCeEEEe
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVWGGA----IFSSMINQ--------SS-----NRRSFIKSSIEMARFYRFHGLDLH 135 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGg~~----~~~~~~~~--------~~-----~r~~f~~~i~~~l~~~~~DGidiD 135 (352)
..+..+++.+++|++ |+|+-+-...+. .+..-... +. ..+....++..++.+|..|.+=+|
T Consensus 136 krDiv~El~~A~rk~--Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfD 213 (346)
T PF01120_consen 136 KRDIVGELADACRKY--GLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFD 213 (346)
T ss_dssp TS-HHHHHHHHHHHT--T-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEE
T ss_pred CCCHHHHHHHHHHHc--CCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEec
Confidence 456788999889988 899987776544 11111100 11 122566889999999999999999
Q ss_pred ecCCCCCcchhHHHHHHHHHHHHHh
Q 046015 136 GVLPDKCTNMTKLGTLFDEWRAEVT 160 (352)
Q Consensus 136 ~e~~~~~~~~~~~~~~l~~lr~~l~ 160 (352)
.-.+.. .+...+..+...+|+.-+
T Consensus 214 g~~~~~-~~~~~~~~~~~~i~~~qp 237 (346)
T PF01120_consen 214 GGWPDP-DEDWDSAELYNWIRKLQP 237 (346)
T ss_dssp STTSCC-CTHHHHHHHHHHHHHHST
T ss_pred CCCCcc-ccccCHHHHHHHHHHhCC
Confidence 887642 333444555555554443
No 98
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=52.18 E-value=77 Score=33.29 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeec
Q 046015 113 RRSFIKSSIEMARFYRFHGLDLHGV 137 (352)
Q Consensus 113 r~~f~~~i~~~l~~~~~DGidiD~e 137 (352)
.+.|++... .+++-|||||+|+.-
T Consensus 550 i~~f~~aA~-~a~~aGfDgveih~a 573 (765)
T PRK08255 550 RDDFVAAAR-RAAEAGFDWLELHCA 573 (765)
T ss_pred HHHHHHHHH-HHHHcCCCEEEEecc
Confidence 445666554 445679999999876
No 99
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=52.10 E-value=1.9e+02 Score=26.33 Aligned_cols=89 Identities=9% Similarity=0.072 Sum_probs=50.4
Q ss_pred CcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHc--CCCeEEEeecCCCCC-------cchhHHHHHHHHHHHHHh
Q 046015 90 SVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFY--RFHGLDLHGVLPDKC-------TNMTKLGTLFDEWRAEVT 160 (352)
Q Consensus 90 ~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~--~~DGidiD~e~~~~~-------~~~~~~~~~l~~lr~~l~ 160 (352)
+..++++|.|. ++ +.++ .+++.+++. ++|+|||++--|... .+.+...++++++|+..+
T Consensus 90 ~~pl~~qi~g~--------~~---~~~~-~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 90 PTPLIASVYGS--------SV---EEFA-EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred CCcEEEEeecC--------CH---HHHH-HHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC
Confidence 46799999773 22 2333 344445543 389999998877531 244566777777776652
Q ss_pred hhhhhcCCceeEEEEEecCCccccccCCChhh-hhc-cCcEEEee
Q 046015 161 SESRKSGKSQLLLVMTSHHLPALESVSYPLDS-MQR-NLDWIHVL 203 (352)
Q Consensus 161 ~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~-l~~-~vD~i~~m 203 (352)
+-+++-+.+... . ..++.+ +.+ -+|.|.+.
T Consensus 158 ----------~pv~vKi~~~~~--~-~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 158 ----------VPVFAKLSPNVT--D-ITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ----------CCEEEECCCChh--h-HHHHHHHHHHcCCCEEEEE
Confidence 346666653211 1 112222 222 37888774
No 100
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=51.80 E-value=78 Score=29.31 Aligned_cols=64 Identities=14% Similarity=0.170 Sum_probs=40.9
Q ss_pred HhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC-----------CcchhHHHHHHH
Q 046015 85 KHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK-----------CTNMTKLGTLFD 153 (352)
Q Consensus 85 k~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----------~~~~~~~~~~l~ 153 (352)
+.......+.+.|+|. |+ +.|++ .+..+.++|+|||||+.--|.. -.+.+...++++
T Consensus 49 ~~~~~e~p~~vQl~g~--------~p---~~~~~-aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~ 116 (318)
T TIGR00742 49 KFSPEESPVALQLGGS--------DP---NDLAK-CAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVK 116 (318)
T ss_pred ccCCCCCcEEEEEccC--------CH---HHHHH-HHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHH
Confidence 3333456788899883 33 23333 4445677899999999976642 134445667777
Q ss_pred HHHHHHh
Q 046015 154 EWRAEVT 160 (352)
Q Consensus 154 ~lr~~l~ 160 (352)
++++..+
T Consensus 117 av~~~~~ 123 (318)
T TIGR00742 117 AMQEAVN 123 (318)
T ss_pred HHHHHhC
Confidence 7777663
No 101
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=51.56 E-value=1.2e+02 Score=28.42 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEE
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSV 97 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsi 97 (352)
-+.++++.+.+|++ |.|+++-+
T Consensus 76 i~~lr~la~~vh~~--ga~~~~QL 97 (338)
T cd02933 76 VEGWKKVTDAVHAK--GGKIFLQL 97 (338)
T ss_pred HHHHHHHHHHHHhc--CCeEEEEc
Confidence 45677888778877 88888776
No 102
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=51.31 E-value=1.3e+02 Score=26.47 Aligned_cols=87 Identities=11% Similarity=0.109 Sum_probs=53.0
Q ss_pred CCCChHHHHHHHHHHHhcCCCcEEE-EEEeCCccchhhhcChhhHHH---HHHHHHHHHHHcC-----CCeEEEeecCCC
Q 046015 70 NSTSEQFFVNFTNTVKHRNPSVITL-LSVWGGAIFSSMINQSSNRRS---FIKSSIEMARFYR-----FHGLDLHGVLPD 140 (352)
Q Consensus 70 ~~~~~~~~~~~~~~lk~~~~~~kvl-lsiGg~~~~~~~~~~~~~r~~---f~~~i~~~l~~~~-----~DGidiD~e~~~ 140 (352)
-|.+......+.+.+.+. |+++= +++.+..-|.--..|++.|++ .-...+.+..+-| +-|-|+.+|
T Consensus 49 LDWs~~er~~l~~ai~et--gv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE--- 123 (287)
T COG3623 49 LDWSKEERLALVNAIQET--GVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYE--- 123 (287)
T ss_pred cCCCHHHHHHHHHHHHHh--CCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeec---
Confidence 344555666666666666 66554 566666633333456766665 4456666766666 678899999
Q ss_pred CCcchhHHHHHHHHHHHHHhhh
Q 046015 141 KCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 141 ~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
+.+.+.-..|++-|+.+..-.
T Consensus 124 -~~d~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 124 -EADEETRQRFIEGLKWAVELA 144 (287)
T ss_pred -cCCHHHHHHHHHHHHHHHHHH
Confidence 344455556777777655544
No 103
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=51.24 E-value=1.3e+02 Score=27.79 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=34.9
Q ss_pred CcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcc------hhHHHHHHHHHHHHH
Q 046015 90 SVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTN------MTKLGTLFDEWRAEV 159 (352)
Q Consensus 90 ~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~------~~~~~~~l~~lr~~l 159 (352)
+..|+++|.|. + .+.|. .++..+++.++|+|+|+.-.+....+ .+.+.++++.+|+..
T Consensus 99 ~~pvi~si~g~--------~---~~~~~-~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~ 162 (325)
T cd04739 99 SIPVIASLNGV--------S---AGGWV-DYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV 162 (325)
T ss_pred CCeEEEEeCCC--------C---HHHHH-HHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc
Confidence 67889999773 1 23333 44445677789999999975332111 123456666666554
No 104
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=50.76 E-value=55 Score=30.51 Aligned_cols=63 Identities=10% Similarity=0.151 Sum_probs=39.4
Q ss_pred HhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC-----------CcchhHHHHHHH
Q 046015 85 KHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK-----------CTNMTKLGTLFD 153 (352)
Q Consensus 85 k~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----------~~~~~~~~~~l~ 153 (352)
+.......+.+.|+|. |+ +.|++ .+..+++.|+|||||+.--|.. ..+.+...++++
T Consensus 59 ~~~~~e~p~~vQl~g~--------~p---~~~~~-aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~ 126 (333)
T PRK11815 59 AFDPEEHPVALQLGGS--------DP---ADLAE-AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVK 126 (333)
T ss_pred ccCCCCCcEEEEEeCC--------CH---HHHHH-HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHH
Confidence 3333456788999883 33 34444 3456677899999999876642 123344556666
Q ss_pred HHHHHH
Q 046015 154 EWRAEV 159 (352)
Q Consensus 154 ~lr~~l 159 (352)
++|++.
T Consensus 127 avr~~v 132 (333)
T PRK11815 127 AMKDAV 132 (333)
T ss_pred HHHHHc
Confidence 666655
No 105
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=49.99 E-value=16 Score=26.14 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=15.4
Q ss_pred CchhHHHHHHHHHHHhhhcccccCCCCc
Q 046015 1 MAYKIVTLFLLLTLSLPLNLQCTSSPNW 28 (352)
Q Consensus 1 m~~~~~~~~l~~~~~~~~~~~~~~~~~~ 28 (352)
|+ |++.+|-++++.++.++.+.++-.+
T Consensus 1 Ma-RRlwiLslLAVtLtVALAAPsQKsK 27 (100)
T PF05984_consen 1 MA-RRLWILSLLAVTLTVALAAPSQKSK 27 (100)
T ss_pred Cc-hhhHHHHHHHHHHHHHhhccccccc
Confidence 77 4444555556666666666544333
No 106
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=49.33 E-value=64 Score=32.81 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEE-e------CCc---------------------cchhhhc---ChhhHHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSV-W------GGA---------------------IFSSMIN---QSSNRRSFIKSSI 121 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsi-G------g~~---------------------~~~~~~~---~~~~r~~f~~~i~ 121 (352)
..+.++.|++.++++ |+-|+|=+ = +.. .|...+- ..+-|.=|+.++.
T Consensus 212 tPedfk~fVD~aH~~--GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal 289 (628)
T COG0296 212 TPEDFKALVDAAHQA--GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANAL 289 (628)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHH
Confidence 678899999999988 89998654 0 100 1222222 2356777899999
Q ss_pred HHHHHcCCCeEEEee
Q 046015 122 EMARFYRFHGLDLHG 136 (352)
Q Consensus 122 ~~l~~~~~DGidiD~ 136 (352)
-|+++|++||+-+|-
T Consensus 290 ~Wl~~yHiDGlRvDA 304 (628)
T COG0296 290 YWLEEYHIDGLRVDA 304 (628)
T ss_pred HHHHHhCCcceeeeh
Confidence 999999999998874
No 107
>PRK03995 hypothetical protein; Provisional
Probab=48.83 E-value=48 Score=29.83 Aligned_cols=66 Identities=8% Similarity=0.053 Sum_probs=38.9
Q ss_pred CCcEEEEEEeCCc---cchhhh-----------cChhhHHHHHHHHHHHHHHc--CCCeEEEeecCCCCCcchhHHHHHH
Q 046015 89 PSVITLLSVWGGA---IFSSMI-----------NQSSNRRSFIKSSIEMARFY--RFHGLDLHGVLPDKCTNMTKLGTLF 152 (352)
Q Consensus 89 ~~~kvllsiGg~~---~~~~~~-----------~~~~~r~~f~~~i~~~l~~~--~~DGidiD~e~~~~~~~~~~~~~~l 152 (352)
...++++.|||.- .|++++ .+-..-.-=-+.+.+.+++. ++|.+.|||....+ .+++.+..++
T Consensus 179 ~~~~~~iGiGGgHYapr~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks~~~~~~~~id~K~~k~-~~r~~i~~~l 257 (267)
T PRK03995 179 EKFKPAIGIGGGHYAPKFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKSTPEIDRIVIDWKGVKS-EDRERIIEFL 257 (267)
T ss_pred cCCCEEEEECCCCccHHHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhccCCCCEEEEecCCCCH-HHHHHHHHHH
Confidence 4689999999954 233332 22111000012244555553 68999999986653 6777777777
Q ss_pred HHH
Q 046015 153 DEW 155 (352)
Q Consensus 153 ~~l 155 (352)
+++
T Consensus 258 e~~ 260 (267)
T PRK03995 258 EEL 260 (267)
T ss_pred HHC
Confidence 664
No 108
>PRK01060 endonuclease IV; Provisional
Probab=47.86 E-value=42 Score=30.10 Aligned_cols=46 Identities=7% Similarity=0.034 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhh
Q 046015 117 IKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 117 ~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
+...++.+++.|||||+|..+.|........-...++++|+.+.+.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~ 59 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKY 59 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHc
Confidence 5567788999999999998775542111122234577777777755
No 109
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=46.75 E-value=1e+02 Score=30.59 Aligned_cols=128 Identities=11% Similarity=0.186 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeC---Cc----cc---hhhh--cChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCc-
Q 046015 77 FVNFTNTVKHRNPSVITLLSVWG---GA----IF---SSMI--NQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCT- 143 (352)
Q Consensus 77 ~~~~~~~lk~~~~~~kvllsiGg---~~----~~---~~~~--~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~- 143 (352)
...+++.+++.+|++|++.|--. |. .+ ..+. ..++..+.+++=++++++.|.=-||+|+--.++++.
T Consensus 155 ~ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~ 234 (496)
T PF02055_consen 155 KIPLIKEALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPD 234 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCC
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCC
Confidence 34677788888899999988622 21 11 1111 123567899999999999999999999764333211
Q ss_pred --------------chhHHHHHHHH-HHHHHhhhhhhcCCceeEEEEEecC--CccccccCCChhhhhccCcEEEeeccc
Q 046015 144 --------------NMTKLGTLFDE-WRAEVTSESRKSGKSQLLLVMTSHH--LPALESVSYPLDSMQRNLDWIHVLTFD 206 (352)
Q Consensus 144 --------------~~~~~~~~l~~-lr~~l~~~~~~~~~~~~~ls~~~~~--~~~~~~~~~d~~~l~~~vD~i~~m~yd 206 (352)
..+....||+. |+-+|++.+.. ..-.++...-.. .+.....-+.=++..+++|-+-+..|.
T Consensus 235 ~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g--~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~ 312 (496)
T PF02055_consen 235 NGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLG--KDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYG 312 (496)
T ss_dssp GGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT---TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETT
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCC--CceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCC
Confidence 12345788886 88888865310 011233333110 011111001223456788888877774
No 110
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=46.08 E-value=1.6e+02 Score=25.82 Aligned_cols=78 Identities=12% Similarity=0.103 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhcCCCcEEE--EEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHH
Q 046015 75 QFFVNFTNTVKHRNPSVITL--LSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLF 152 (352)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvl--lsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l 152 (352)
+.+..+++.+++.+..+-++ +|=|| -++...-+..+++++++.|+.=|-|+.=.-+.+........+|
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~GLlSdGG----------VHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl 83 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMGLLSDGG----------VHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYL 83 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEEEESS-S----------SS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEEecCCC----------ccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHH
Confidence 45667777777765445555 44455 2556677888999999999988878765445445556778889
Q ss_pred HHHHHHHhhh
Q 046015 153 DEWRAEVTSE 162 (352)
Q Consensus 153 ~~lr~~l~~~ 162 (352)
++|.+.+.+.
T Consensus 84 ~~l~~~l~~~ 93 (223)
T PF06415_consen 84 EELEEKLAEI 93 (223)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998875
No 111
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=45.74 E-value=73 Score=33.27 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeCC----------ccc-------------------hh-h--hcChhhHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVWGG----------AIF-------------------SS-M--INQSSNRRSFIKSS 120 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGg~----------~~~-------------------~~-~--~~~~~~r~~f~~~i 120 (352)
....++.+++.++++ |++|++=+=-. ..| .. . ..++..|+-+++++
T Consensus 298 tp~dlk~LVd~aH~~--GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~ 375 (758)
T PLN02447 298 TPEDLKYLIDKAHSL--GLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNL 375 (758)
T ss_pred CHHHHHHHHHHHHHC--CCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHH
Confidence 456789999988887 99999765110 000 00 0 12356778889999
Q ss_pred HHHHHHcCCCeEEEe
Q 046015 121 IEMARFYRFHGLDLH 135 (352)
Q Consensus 121 ~~~l~~~~~DGidiD 135 (352)
.-|+++|++||+-+|
T Consensus 376 ~~Wl~ey~IDGfRfD 390 (758)
T PLN02447 376 RWWLEEYKFDGFRFD 390 (758)
T ss_pred HHHHHHhCccccccc
Confidence 999999999999998
No 112
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=45.61 E-value=1.1e+02 Score=28.59 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=27.2
Q ss_pred hcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCC
Q 046015 107 INQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPD 140 (352)
Q Consensus 107 ~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~ 140 (352)
..|++.|+=+.+.+.+++.+.|+||+=+|+..|.
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCc
Confidence 3467778878777778888899999999987664
No 113
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=43.12 E-value=72 Score=28.45 Aligned_cols=52 Identities=12% Similarity=0.174 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCc------cchhhhcChhhHHHHHHHHHHHHHH
Q 046015 75 QFFVNFTNTVKHRNPSVITLLSVWGGA------IFSSMINQSSNRRSFIKSSIEMARF 126 (352)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGg~~------~~~~~~~~~~~r~~f~~~i~~~l~~ 126 (352)
..+..+++.++..||++||+++|.--. .-.-+..|.-+...+...+-.+++.
T Consensus 152 ~~l~~~~~~l~~~nP~~kiilTVSPVrl~~T~~~~d~~~an~~SKs~Lr~a~~~l~~~ 209 (251)
T PF08885_consen 152 EDLEAIIDLLRSINPDIKIILTVSPVRLIATFRDRDGLVANQYSKSTLRAAAHELVRA 209 (251)
T ss_pred HHHHHHHHHHHhhCCCceEEEEeccchhhcccccccchhhhhhhHHHHHHHHHHHHhc
Confidence 345677778999999999999997644 1233444555555555555555553
No 114
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=42.98 E-value=1.4e+02 Score=28.57 Aligned_cols=82 Identities=10% Similarity=0.005 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeCCc----cchh---hh----cChhhHHHH---HHHHHHHHHHcCCCeEEEeecC
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVWGGA----IFSS---MI----NQSSNRRSF---IKSSIEMARFYRFHGLDLHGVL 138 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGg~~----~~~~---~~----~~~~~r~~f---~~~i~~~l~~~~~DGidiD~e~ 138 (352)
..+..+++.+++|++ |+|+-+-...+. .+.. .. ..+...+-+ ..++..++.+|+=|.+=+|+.+
T Consensus 126 krDiv~el~~A~rk~--Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~ 203 (384)
T smart00812 126 KRDLVGELADAVRKR--GLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGW 203 (384)
T ss_pred CcchHHHHHHHHHHc--CCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 567788999889988 999988776533 2211 00 011222223 6899999999999999999876
Q ss_pred CCCCcchhHHHHHHHHHHH
Q 046015 139 PDKCTNMTKLGTLFDEWRA 157 (352)
Q Consensus 139 ~~~~~~~~~~~~~l~~lr~ 157 (352)
+.. ........|++.+|+
T Consensus 204 ~~~-~~~~~~~~l~~~~~~ 221 (384)
T smart00812 204 EAP-DDYWRSKEFLAWLYN 221 (384)
T ss_pred CCc-cchhcHHHHHHHHHH
Confidence 543 222233444444443
No 115
>PRK09936 hypothetical protein; Provisional
Probab=42.05 E-value=2.7e+02 Score=25.39 Aligned_cols=121 Identities=8% Similarity=0.175 Sum_probs=68.3
Q ss_pred EecC-CCCCCCCCCCC---------CCccEEEEeeEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCc-
Q 046015 33 YWHA-HSELPIAEIHS---------ALFSNLMCAFAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGA- 101 (352)
Q Consensus 33 y~~~-~~~~~~~~~~~---------~~~Thi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~- 101 (352)
||.+ ++......-++ -.|.++|+-|-..... .+... +..+.+..+.+++. |+||.+.+--..
T Consensus 25 F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~----~fg~~-~g~La~~l~~A~~~--Gl~v~vGL~~Dp~ 97 (296)
T PRK09936 25 FYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDA----DFGGQ-RGWLAKRLAAAQQA--GLKLVVGLYADPE 97 (296)
T ss_pred eeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCC----Ccccc-hHHHHHHHHHHHHc--CCEEEEcccCChH
Confidence 5666 33334444444 3499999988777222 23322 34455555566666 999998886655
Q ss_pred cchhhhcChhhHHHHH--------HHHHHHHHHcCC--CeEEEeecCCC-C---CcchhHHHHHHHHHHHHHh
Q 046015 102 IFSSMINQSSNRRSFI--------KSSIEMARFYRF--HGLDLHGVLPD-K---CTNMTKLGTLFDEWRAEVT 160 (352)
Q Consensus 102 ~~~~~~~~~~~r~~f~--------~~i~~~l~~~~~--DGidiD~e~~~-~---~~~~~~~~~~l~~lr~~l~ 160 (352)
-|.....|+...+.+. .....+-...++ +|--|-.|--. + ++.++.+...++.+...++
T Consensus 98 y~q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~rR~~L~~~L~~~~~~l~ 170 (296)
T PRK09936 98 FFMHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEARRQPLLTWLNAAQRLID 170 (296)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHHHHHHHHHHHHHHHHhCC
Confidence 4555544644444333 334444455556 99888777321 1 2334455555555555555
No 116
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=41.63 E-value=2.3e+02 Score=26.49 Aligned_cols=66 Identities=5% Similarity=-0.044 Sum_probs=42.9
Q ss_pred CCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC-----CcchhHHHHHHHHHHHHHh
Q 046015 89 PSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK-----CTNMTKLGTLFDEWRAEVT 160 (352)
Q Consensus 89 ~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----~~~~~~~~~~l~~lr~~l~ 160 (352)
.++.|++||+|... ...+..-+.|++.+..+ .. +.|++++++--|.. .++.+.+.++++++|+..+
T Consensus 136 ~~~pvivsI~~~~~----~~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~ 206 (344)
T PRK05286 136 RGIPLGINIGKNKD----TPLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQA 206 (344)
T ss_pred CCCcEEEEEecCCC----CCcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHh
Confidence 46889999988310 00122344555555544 33 48999999976643 2455678888888888876
No 117
>PRK14866 hypothetical protein; Provisional
Probab=41.05 E-value=58 Score=31.66 Aligned_cols=65 Identities=11% Similarity=0.036 Sum_probs=39.5
Q ss_pred CCcEEEEEEeCCc--------------cchhhhcChhhHHHH-HH-HHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHH
Q 046015 89 PSVITLLSVWGGA--------------IFSSMINQSSNRRSF-IK-SSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLF 152 (352)
Q Consensus 89 ~~~kvllsiGg~~--------------~~~~~~~~~~~r~~f-~~-~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l 152 (352)
.+.++++.|||.- .|..++.+-.. ..+ -. .+.+.+++.+.|.+.|||....+ .+++.+..++
T Consensus 183 ~~~~~~iG~GGgHYapr~t~i~le~~~~~GHi~pky~l-~~l~~~~~i~~a~~~~~~~~a~iD~Ks~k~-~~r~~i~~~l 260 (451)
T PRK14866 183 HTDRPLVGFGGGHYAPRQTRIVLETDWAFGHIAADWQL-GALGDPAVLRAAFEASGADAAYIDRKAMSS-GDRPRLEALL 260 (451)
T ss_pred cCCCEEEEeCCCCcchhHHHHhhcCCeeEEeeccccch-hccCcHHHHHHHHHhcCCCEEEEecCCCCH-HHHHHHHHHH
Confidence 4679999999954 23333322110 001 01 34455566789999999986653 6777777777
Q ss_pred HHH
Q 046015 153 DEW 155 (352)
Q Consensus 153 ~~l 155 (352)
+++
T Consensus 261 ~~l 263 (451)
T PRK14866 261 EEL 263 (451)
T ss_pred HHC
Confidence 665
No 118
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=40.39 E-value=1.4e+02 Score=27.59 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=28.3
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeEEEeecCCC
Q 046015 108 NQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPD 140 (352)
Q Consensus 108 ~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~ 140 (352)
.|++.|+=+.+.+..++.+.|+||+=+|.-.|.
T Consensus 130 tnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 130 TNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred CChHHHHHHHHHHHHHhhcCCCceEEeeCCCCc
Confidence 578888889888888888999999999987664
No 119
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=40.26 E-value=1.4e+02 Score=25.61 Aligned_cols=64 Identities=8% Similarity=0.025 Sum_probs=37.4
Q ss_pred HHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCChhhhhccCcEEEe
Q 046015 123 MARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHV 202 (352)
Q Consensus 123 ~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~ 202 (352)
.+.+.|.|-|-+++|.. .....+++.+|+. +....+++-|..... .+..+.+.+|+|.+
T Consensus 75 ~~~~~g~~~i~~H~E~~------~~~~~~i~~ik~~-----------g~k~GialnP~T~~~----~~~~~l~~vD~Vlv 133 (201)
T PF00834_consen 75 EFAEAGADYITFHAEAT------EDPKETIKYIKEA-----------GIKAGIALNPETPVE----ELEPYLDQVDMVLV 133 (201)
T ss_dssp HHHHHT-SEEEEEGGGT------TTHHHHHHHHHHT-----------TSEEEEEE-TTS-GG----GGTTTGCCSSEEEE
T ss_pred HHHhcCCCEEEEcccch------hCHHHHHHHHHHh-----------CCCEEEEEECCCCch----HHHHHhhhcCEEEE
Confidence 34556999999999922 2334556665553 134555554432221 24567788999999
Q ss_pred ecccc
Q 046015 203 LTFDY 207 (352)
Q Consensus 203 m~yd~ 207 (352)
|+-+.
T Consensus 134 MsV~P 138 (201)
T PF00834_consen 134 MSVEP 138 (201)
T ss_dssp ESS-T
T ss_pred EEecC
Confidence 99764
No 120
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=37.94 E-value=2e+02 Score=26.58 Aligned_cols=66 Identities=8% Similarity=-0.043 Sum_probs=40.6
Q ss_pred CCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC-----CcchhHHHHHHHHHHHHHh
Q 046015 89 PSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK-----CTNMTKLGTLFDEWRAEVT 160 (352)
Q Consensus 89 ~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----~~~~~~~~~~l~~lr~~l~ 160 (352)
.+..+++||+|...- . -+..-+.|++.+-.+ .. ..|+|++++--|.. .++.+.+.++++.+|+...
T Consensus 127 ~~~plivsi~g~~~~-~---~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~ 197 (327)
T cd04738 127 RGGPLGVNIGKNKDT-P---LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERN 197 (327)
T ss_pred CCCeEEEEEeCCCCC-c---ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHh
Confidence 368899999884200 0 012233444443333 23 38999999976643 2455677888888888875
No 121
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=36.79 E-value=79 Score=24.64 Aligned_cols=46 Identities=7% Similarity=0.058 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhh
Q 046015 117 IKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSES 163 (352)
Q Consensus 117 ~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~ 163 (352)
.+.+.++|++.|+++--+++++.. ..+.+.|...++++.+.+.+.+
T Consensus 80 ~~~lke~l~elgie~eRv~~~wiS-a~E~ekf~e~~~efv~~i~~lG 125 (132)
T COG1908 80 MELLKELLKELGIEPERVRVLWIS-AAEGEKFAETINEFVERIKELG 125 (132)
T ss_pred HHHHHHHHHHhCCCcceEEEEEEe-hhhHHHHHHHHHHHHHHHHHhC
Confidence 456667788999988888888766 3788999999999999998764
No 122
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=36.69 E-value=1.4e+02 Score=28.16 Aligned_cols=28 Identities=11% Similarity=-0.056 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeecCCC
Q 046015 113 RRSFIKSSIEMARFYRFHGLDLHGVLPD 140 (352)
Q Consensus 113 r~~f~~~i~~~l~~~~~DGidiD~e~~~ 140 (352)
-+.-++++++..-++|+.=||--|-|-.
T Consensus 32 d~~~~~~~i~~aie~GiNyidTA~~Yh~ 59 (391)
T COG1453 32 DEENANETIDYAIEHGINYIDTAWPYHG 59 (391)
T ss_pred cHHHHHHHHHHHHHcCCceEeecccccC
Confidence 3456677777888889999999888754
No 123
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=36.58 E-value=80 Score=26.09 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=32.9
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHH
Q 046015 109 QSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDE 154 (352)
Q Consensus 109 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~ 154 (352)
+++..+++|.|-+..|-+.|.-|+.|.+|-| +-++.+..+.+.
T Consensus 146 ~~eik~kiIkNsinvlmtRGIrGlyiyaeDp---elrerl~~l~~~ 188 (191)
T COG3410 146 NQEIKEKIIKNSINVLMTRGIRGLYIYAEDP---ELRERLVELKRG 188 (191)
T ss_pred CHHHHHHHHHHHHHHHHhcccceEEEEEeCH---HHHHHHHHHHhh
Confidence 5677889999999999999999999999954 344444444443
No 124
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=36.45 E-value=1.9e+02 Score=27.41 Aligned_cols=110 Identities=12% Similarity=0.003 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCc------------------cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeec
Q 046015 76 FFVNFTNTVKHRNPSVITLLSVWGGA------------------IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGV 137 (352)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsiGg~~------------------~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e 137 (352)
.-..+++.+|++.|++.+ +.|||.. +|..++..--.--+-++.+++.+....-|.+.. ..
T Consensus 16 lGa~LikaLk~~~~~~ef-vGvgG~~m~aeG~~sl~~~~elsvmGf~EVL~~lp~llk~~~~~~~~i~~~kpD~~i~-ID 93 (381)
T COG0763 16 LGAGLIKALKARYPDVEF-VGVGGEKMEAEGLESLFDMEELSVMGFVEVLGRLPRLLKIRRELVRYILANKPDVLIL-ID 93 (381)
T ss_pred HHHHHHHHHHhhCCCeEE-EEeccHHHHhccCccccCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-eC
Confidence 345688899999987775 4888843 233333222222245567777777778886543 23
Q ss_pred CCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCChhhhhccCcEEEee
Q 046015 138 LPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVL 203 (352)
Q Consensus 138 ~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~m 203 (352)
+|+ .=..+.+.+|...... -+.--+.|+.+.|.. .-...+.+++|++...
T Consensus 94 sPd------Fnl~vak~lrk~~p~i---------~iihYV~PsVWAWr~-~Ra~~i~~~~D~lLai 143 (381)
T COG0763 94 SPD------FNLRVAKKLRKAGPKI---------KIIHYVSPSVWAWRP-KRAVKIAKYVDHLLAI 143 (381)
T ss_pred CCC------CchHHHHHHHHhCCCC---------CeEEEECcceeeech-hhHHHHHHHhhHeeee
Confidence 332 1146777777776532 233444555666663 3367899999998664
No 125
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=35.37 E-value=2.6e+02 Score=23.12 Aligned_cols=108 Identities=5% Similarity=-0.024 Sum_probs=59.5
Q ss_pred CCccEEEEeeEEEeCCCc-eEee-----CCCChHHHHHHHHHHHhcCCCcEEEEEEeCCc-cchhhhcChhhHHH----H
Q 046015 48 ALFSNLMCAFAFINSSTY-NIFI-----NSTSEQFFVNFTNTVKHRNPSVITLLSVWGGA-IFSSMINQSSNRRS----F 116 (352)
Q Consensus 48 ~~~Thi~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~-~~~~~~~~~~~r~~----f 116 (352)
-.|.+||+.+........ -... .......+..+++.+.+. |+||.++++-+. -|.. .+.+.... .
T Consensus 32 ~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~--Gmkv~~Gl~~~~~~w~~--~~~~~~~~~~~~v 107 (166)
T PF14488_consen 32 IGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKY--GMKVFVGLYFDPDYWDQ--GDLDWEAERNKQV 107 (166)
T ss_pred cCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHc--CCEEEEeCCCCchhhhc--cCHHHHHHHHHHH
Confidence 347888887665533210 0001 112334566676666666 999999999765 3332 44444433 4
Q ss_pred HHHHHHHHHHc-CCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhh
Q 046015 117 IKSSIEMARFY-RFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 117 ~~~i~~~l~~~-~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
++.+.+.-..| .|.|--|-.|..... .+-....+.|+..++..
T Consensus 108 ~~el~~~yg~h~sf~GWYip~E~~~~~---~~~~~~~~~l~~~lk~~ 151 (166)
T PF14488_consen 108 ADELWQRYGHHPSFYGWYIPYEIDDYN---WNAPERFALLGKYLKQI 151 (166)
T ss_pred HHHHHHHHcCCCCCceEEEecccCCcc---cchHHHHHHHHHHHHHh
Confidence 44444422222 299999999954321 22355666666666654
No 126
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=34.95 E-value=22 Score=27.30 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=13.0
Q ss_pred HHhHcCCCCcceeeec
Q 046015 217 EWLKRGFQAKKLVLGL 232 (352)
Q Consensus 217 ~~~~~g~p~~Kivlgl 232 (352)
..+++|+|++.||||+
T Consensus 82 eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 82 ELVEAGVPKEDIVLGF 97 (111)
T ss_dssp HHHHTT--GGGEEETT
T ss_pred HHHHcCCCHHHEEEcc
Confidence 7899999999999996
No 127
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=34.94 E-value=93 Score=27.82 Aligned_cols=45 Identities=9% Similarity=0.066 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhh
Q 046015 118 KSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 118 ~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
...++.+++.|||||+|....+........-..-+++++..+.+.
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG 57 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc
Confidence 556788999999999997654432111100124566666666543
No 128
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=34.35 E-value=1.6e+02 Score=27.12 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=36.2
Q ss_pred HHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC-----------CcchhHHHHHH
Q 046015 84 VKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK-----------CTNMTKLGTLF 152 (352)
Q Consensus 84 lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----------~~~~~~~~~~l 152 (352)
+.......++.+-|+|. |++ .| ...+..+...++|||||+.-=|.. -.+.+....++
T Consensus 47 ~~~~~~~~p~~~Ql~g~--------~~~---~~-~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv 114 (309)
T PF01207_consen 47 LPFLPNERPLIVQLFGN--------DPE---DL-AEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIV 114 (309)
T ss_dssp S-GCC-T-TEEEEEE-S---------HH---HH-HHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHH
T ss_pred ccccccccceeEEEeec--------cHH---HH-HHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHH
Confidence 33333346788888883 332 23 333446666899999999987642 24556788888
Q ss_pred HHHHHHHh
Q 046015 153 DEWRAEVT 160 (352)
Q Consensus 153 ~~lr~~l~ 160 (352)
+++++.++
T Consensus 115 ~~~~~~~~ 122 (309)
T PF01207_consen 115 KAVRKAVP 122 (309)
T ss_dssp HHHHHH-S
T ss_pred Hhhhcccc
Confidence 88888776
No 129
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=34.26 E-value=95 Score=20.53 Aligned_cols=41 Identities=10% Similarity=-0.068 Sum_probs=21.4
Q ss_pred HHHHHHHHHcCCCeE-EEeecCCCCCcchhHHHHHHHHHHHHH
Q 046015 118 KSSIEMARFYRFHGL-DLHGVLPDKCTNMTKLGTLFDEWRAEV 159 (352)
Q Consensus 118 ~~i~~~l~~~~~DGi-diD~e~~~~~~~~~~~~~~l~~lr~~l 159 (352)
..+++.|+..|+||. .|.||-+. .+....+..-++-||..+
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~-~~~~~G~~~a~~~lr~~l 44 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDAL-MDPEEGAREAAAFLRKLL 44 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STT-TSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCceEEEEeecCC-CCHHHHHHHHHHHHHHhc
Confidence 457888999999996 56777544 233445555555555444
No 130
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=34.09 E-value=3.6e+02 Score=27.14 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcC-CceeEEEEEecCCccccccCCC
Q 046015 111 SNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSG-KSQLLLVMTSHHLPALESVSYP 189 (352)
Q Consensus 111 ~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~-~~~~~ls~~~~~~~~~~~~~~d 189 (352)
...+-|-.++..+++--.+-.+-|=|-...+-++-.....++++.++.++.++...+ +..+-+-+-+|+. .+-
T Consensus 366 ~~~~if~tQLRAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsA------a~~ 439 (574)
T COG1080 366 ERPEIFRTQLRAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSA------ALI 439 (574)
T ss_pred ccHHHHHHHHHHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHH------HHH
Confidence 345568899999999877777777555444445556677778777777777654332 1222233333321 244
Q ss_pred hhhhhccCcEEEeecccc
Q 046015 190 LDSMQRNLDWIHVLTFDY 207 (352)
Q Consensus 190 ~~~l~~~vD~i~~m~yd~ 207 (352)
...+++.|||+.|-|-|+
T Consensus 440 a~~lakevDFfSIGTNDL 457 (574)
T COG1080 440 ADQLAKEVDFFSIGTNDL 457 (574)
T ss_pred HHHHHHhCCEeeecccHH
Confidence 678999999999988774
No 131
>KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only]
Probab=32.55 E-value=1.3e+02 Score=28.73 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCCCeEEEee
Q 046015 116 FIKSSIEMARFYRFHGLDLHG 136 (352)
Q Consensus 116 f~~~i~~~l~~~~~DGidiD~ 136 (352)
+.....+++-+-|||||+|+=
T Consensus 175 rfv~Aak~~~e~GFDGVEIHg 195 (400)
T KOG0134|consen 175 RFVYAAKAAYECGFDGVEIHG 195 (400)
T ss_pred HHHHHHHHHHhcCCCeEEEec
Confidence 445566677778999999964
No 132
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=32.52 E-value=58 Score=19.47 Aligned_cols=6 Identities=17% Similarity=0.036 Sum_probs=3.3
Q ss_pred CCcEEE
Q 046015 26 PNWIRG 31 (352)
Q Consensus 26 ~~~~v~ 31 (352)
+++++|
T Consensus 23 pG~ViI 28 (36)
T PF08194_consen 23 PGNVII 28 (36)
T ss_pred CCeEEE
Confidence 555554
No 133
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=32.50 E-value=2.3e+02 Score=24.41 Aligned_cols=46 Identities=2% Similarity=-0.066 Sum_probs=29.8
Q ss_pred CCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcC-CCeEEEeec
Q 046015 89 PSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYR-FHGLDLHGV 137 (352)
Q Consensus 89 ~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~e 137 (352)
.|+||+++||---.-.. .....+-..+++..+.++-. +++|+|-+|
T Consensus 118 eGl~ViaCIGE~leeRE---aG~t~dVv~~Ql~aiad~v~~w~niviAYE 164 (247)
T KOG1643|consen 118 EGLKVIACIGETLEERE---AGKTLDVVFRQLKAIADKVKDWSNIVIAYE 164 (247)
T ss_pred cCCeEEEEecccHHhhh---cCchHHHHHHHHHHHHHhcCCccceEEEee
Confidence 39999999997320000 11222345566777777766 899999999
No 134
>PF04468 PSP1: PSP1 C-terminal conserved region; InterPro: IPR007557 The yeast polymerase suppressor 1 (PSP1) protein partially suppresses mutations in DNA polymerases alpha and delta []. The C-terminal half of PSP1 contains a domain, which is also found in several hypothetical proteins from both eukaryotic and prokaryotic sources: Crithidia fasciculata RBP45 and RBP33, subunits of the cycling sequence binding protein (CSBP) II. RBP45 and RBP33 proteins bind specifically to the cycling sequences present in several mRNAs that accumulate periodically during the cell cycle. RBP45 and RBP33 are phosphoproteins, which are phosphorylated differentially during progression through the cell cycle. Hypothetical proteins with high sequence similarity have been identified in other kinetoplastid organisms []. Bacillus subtilis yaaT protein, which plays a significant role in phosphorelay during initiation of sporulation. It is possible that the yaaT protein is also related to DNA replication. The sequence of the yaaT protein is widely conserved in prokaryotes (bacteria and archaea), but the functions of the protein are unknown []. The actual biological significance of the PSP1 C-terminal domain has not yet been clearly established.
Probab=31.66 E-value=1.5e+02 Score=21.63 Aligned_cols=50 Identities=8% Similarity=-0.011 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEEeecCCCC---------CcchhHHHHHHHHHHHHHh
Q 046015 111 SNRRSFIKSSIEMARFYRFHGLDLHGVLPDK---------CTNMTKLGTLFDEWRAEVT 160 (352)
Q Consensus 111 ~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~---------~~~~~~~~~~l~~lr~~l~ 160 (352)
...+.........+++++++=--+|.|+.-+ .+++..|..|+++|...++
T Consensus 22 ~~e~~al~~c~~~~~~~~L~m~lvd~e~~~D~~k~~fyy~a~~rvDFR~Lvr~L~~~f~ 80 (88)
T PF04468_consen 22 EREEEALKFCRELVKELGLPMKLVDVEYQFDGSKLTFYYTAESRVDFRELVRDLAREFK 80 (88)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEEEEcCCCEEEEEEEeCCcCcHHHHHHHHHHHhC
Confidence 3445566777778888998777777776632 4678899999999999986
No 135
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=31.38 E-value=3.3e+02 Score=25.42 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeC---Cc---------cchhhhcC--hhhHHHHHHHHHHHHHHcCCCeEEEeecC
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVWG---GA---------IFSSMINQ--SSNRRSFIKSSIEMARFYRFHGLDLHGVL 138 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGg---~~---------~~~~~~~~--~~~r~~f~~~i~~~l~~~~~DGidiD~e~ 138 (352)
+......+.+++|+. |+||||-+.= |. .|..+-.+ .+....+..++++.|+.. |+..||-.
T Consensus 56 ~~~~~~~~akrak~~--Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~---G~~pd~VQ 130 (332)
T PF07745_consen 56 DLEDVIALAKRAKAA--GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAA---GVTPDMVQ 130 (332)
T ss_dssp SHHHHHHHHHHHHHT--T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHT---T--ESEEE
T ss_pred CHHHHHHHHHHHHHC--CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHC---CCCccEEE
Confidence 344455565666666 9999999953 21 23332101 133445666777777765 57777754
Q ss_pred CCC------------CcchhHHHHHHHHHHHHHhhh
Q 046015 139 PDK------------CTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 139 ~~~------------~~~~~~~~~~l~~lr~~l~~~ 162 (352)
.++ ..+..++..|++.-..+.++.
T Consensus 131 VGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~ 166 (332)
T PF07745_consen 131 VGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREV 166 (332)
T ss_dssp ESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTH
T ss_pred eCccccccccCcCCCccCHHHHHHHHHHHHHHHHhc
Confidence 432 245556666666555555553
No 136
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=30.88 E-value=45 Score=22.30 Aligned_cols=17 Identities=29% Similarity=0.387 Sum_probs=10.4
Q ss_pred CchhHHHHHHHHHHHhh
Q 046015 1 MAYKIVTLFLLLTLSLP 17 (352)
Q Consensus 1 m~~~~~~~~l~~~~~~~ 17 (352)
||.|.+++.|++..+..
T Consensus 1 MA~Kl~vialLC~aLva 17 (65)
T PF10731_consen 1 MASKLIVIALLCVALVA 17 (65)
T ss_pred CcchhhHHHHHHHHHHH
Confidence 88777765555544443
No 137
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=30.79 E-value=1.2e+02 Score=29.69 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=22.8
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEeec
Q 046015 109 QSSNRRSFIKSSIEMARFYRFHGLDLHGV 137 (352)
Q Consensus 109 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e 137 (352)
++.-|+.+++.+..|++++|+||+-||--
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDav 235 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAV 235 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhh
Confidence 46667778876666677799999999965
No 138
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=30.78 E-value=2.2e+02 Score=24.46 Aligned_cols=72 Identities=8% Similarity=0.078 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCC-cchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccC
Q 046015 109 QSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKC-TNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVS 187 (352)
Q Consensus 109 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~-~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~ 187 (352)
||.+. .-+..++..+.+.|.|+|.| -++. -+.++...+++.+|+..+ .| ..| .|.
T Consensus 6 DP~k~-e~~~~ia~~v~~~gtDaI~V----GGS~gvt~~~~~~~v~~ik~~~~-------lP-vil---fp~-------- 61 (205)
T TIGR01769 6 DPEKS-DEIEKIAKNAKDAGTDAIMV----GGSLGIVESNLDQTVKKIKKITN-------LP-VIL---FPG-------- 61 (205)
T ss_pred CCCcH-HHHHHHHHHHHhcCCCEEEE----cCcCCCCHHHHHHHHHHHHhhcC-------CC-EEE---ECC--------
Confidence 55555 33444777888999999977 2221 356788888888887543 11 222 222
Q ss_pred CChhhhhccCcEEEeecc
Q 046015 188 YPLDSMQRNLDWIHVLTF 205 (352)
Q Consensus 188 ~d~~~l~~~vD~i~~m~y 205 (352)
+...+.+.+|.+.+|+-
T Consensus 62 -~~~~i~~~aD~~~~~sl 78 (205)
T TIGR01769 62 -NVNGLSRYADAVFFMSL 78 (205)
T ss_pred -CccccCcCCCEEEEEEe
Confidence 34567788999999873
No 139
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=30.77 E-value=3.1e+02 Score=30.72 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEe-------CC----------c--cc--------------h-----hhhcChhhHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVW-------GG----------A--IF--------------S-----SMINQSSNRR 114 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiG-------g~----------~--~~--------------~-----~~~~~~~~r~ 114 (352)
....++.+++.++++ |++|++=+= +. . .+ . --..++..|+
T Consensus 245 ~~~efk~lV~~~H~~--GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~ 322 (1221)
T PRK14510 245 GEEEFAQAIKEAQSA--GIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILR 322 (1221)
T ss_pred cHHHHHHHHHHHHHC--CCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHH
Confidence 345688898888888 999997651 10 0 00 0 0112456677
Q ss_pred HHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhh
Q 046015 115 SFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 115 ~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
-.++++.-|++ +|+||.-+|--..-...+ ..|+++++..+++.
T Consensus 323 ~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~----~~f~~~~~~~l~ai 365 (1221)
T PRK14510 323 LPMDVLRSWAK-RGVDGFRLDLADELAREP----DGFIDEFRQFLKAM 365 (1221)
T ss_pred HHHHHHHHHHH-hCCCEEEEechhhhccCc----cchHHHHHHHHHHh
Confidence 77888888999 999999999653221111 23555555555543
No 140
>COG3317 NlpB Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=30.29 E-value=2.6e+02 Score=26.06 Aligned_cols=55 Identities=9% Similarity=0.029 Sum_probs=32.7
Q ss_pred eEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEE
Q 046015 66 NIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLD 133 (352)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGid 133 (352)
.+++..+..+ ..++.-.+.++.|=..+|-+-+ .+.. ..-..+.++++++||+++.
T Consensus 74 ~~dIrpP~~p--L~~Isg~r~erdGd~~~lv~~~---------~~~~--~~Wpqv~~~~qE~gf~i~~ 128 (342)
T COG3317 74 ALDIRPPAQP--LALISGSRAERDGDTRWLVVEN---------QPAA--YLWPQVRRFLQENGFRIAS 128 (342)
T ss_pred ccccCCCCCc--hhhcccchheecCCeeEEEEeC---------CchH--HhHHHHHHHHHHcCCcccc
Confidence 3444444322 2334455655556555555433 2222 6788999999999999875
No 141
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=30.17 E-value=2e+02 Score=26.49 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=39.9
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC---CcchhHHHHHHHHHHHHHhh
Q 046015 104 SSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK---CTNMTKLGTLFDEWRAEVTS 161 (352)
Q Consensus 104 ~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~---~~~~~~~~~~l~~lr~~l~~ 161 (352)
..++.|++..+.....+.++|.+|+|+|.|.-.-.... -+..+.+..-+.+|-+++++
T Consensus 138 ~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~ 198 (394)
T COG0050 138 VDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDS 198 (394)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHh
Confidence 55666788888888999999999999999874431110 12333466667777776664
No 142
>COG4333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.94 E-value=47 Score=26.56 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=32.6
Q ss_pred eeEEEeccc-eeEEEE-eCCEEEEeCcHHHHHHHHHHHHhcCCceEEEE
Q 046015 280 AASVYNHSY-VMNFFS-AKTTWVNFDGVETIRSKVSFAKEKGLLGYHVF 326 (352)
Q Consensus 280 ~~~~~d~~~-~~~y~~-~~~~~i~ydd~~S~~~K~~~~~~~~l~Gi~~W 326 (352)
....||+.. .+.|.. ....-=.--|-++++.-..+++..|.||+.+=
T Consensus 28 L~r~WDe~Kp~~~fi~lnPs~ada~~Dd~Ti~rci~fA~swgyGgvy~~ 76 (167)
T COG4333 28 LSRVWDESKPYTLFIGLNPSYADAEKDDRTLSRCISFAKSWGYGGVYMA 76 (167)
T ss_pred hhhhhcccCCeeEEEEeccchhhhhhcchHHHHHHHHHhhcccCcEEee
Confidence 557899876 566655 21111012567899999999999999998753
No 143
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=29.53 E-value=2e+02 Score=28.83 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=33.8
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEee-cCCC-----CCcchhHHHHHHHHHHHHHhhh
Q 046015 109 QSSNRRSFIKSSIEMARFYRFHGLDLHG-VLPD-----KCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 109 ~~~~r~~f~~~i~~~l~~~~~DGidiD~-e~~~-----~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
+++.|+.+++.+..|++ +|+||+-+|- .+.. ..++...-..|++++++.+++.
T Consensus 172 np~vr~~l~~~~~~w~~-~GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~ 230 (539)
T TIGR02456 172 NPAVHDAVHDVMRFWLD-LGVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDRE 230 (539)
T ss_pred CHHHHHHHHHHHHHHHH-cCCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHh
Confidence 56778888887777776 8999999994 2211 0111111246778888777654
No 144
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=29.02 E-value=4.8e+02 Score=24.30 Aligned_cols=79 Identities=8% Similarity=-0.011 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC-----CcchhHHHHH
Q 046015 77 FVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK-----CTNMTKLGTL 151 (352)
Q Consensus 77 ~~~~~~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----~~~~~~~~~~ 151 (352)
...+++.+++...+..+.+|||+.. ....+..-+.|++.+-.+- . ..|.++|+.--|.. .++.+.+.++
T Consensus 121 ~~~~l~~i~~~~~~~~i~vsi~~~~----~~~~~~~~~dy~~~~~~~~-~-~ad~iElNlScPn~~~~~~~~~~~~~~~i 194 (335)
T TIGR01036 121 ADVLVERLKRARYKGPIGINIGKNK----DTPSEDAKEDYAACLRKLG-P-LADYLVVNVSSPNTPGLRDLQYKAELRDL 194 (335)
T ss_pred HHHHHHHHhhccCCCcEEEEEeCCC----CCCcccCHHHHHHHHHHHh-h-hCCEEEEEccCCCCCCcccccCHHHHHHH
Confidence 3444444555455688999998742 0111223455655555443 3 38999999876642 2455678888
Q ss_pred HHHHHHHHhh
Q 046015 152 FDEWRAEVTS 161 (352)
Q Consensus 152 l~~lr~~l~~ 161 (352)
++.+++..+.
T Consensus 195 ~~~V~~~~~~ 204 (335)
T TIGR01036 195 LTAVKQEQDG 204 (335)
T ss_pred HHHHHHHHHh
Confidence 8888877763
No 145
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.00 E-value=2.3e+02 Score=26.05 Aligned_cols=61 Identities=10% Similarity=-0.031 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCC----c-------------------------------cchhhhcChhhHHHHHHHH
Q 046015 76 FFVNFTNTVKHRNPSVITLLSVWGG----A-------------------------------IFSSMINQSSNRRSFIKSS 120 (352)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsiGg~----~-------------------------------~~~~~~~~~~~r~~f~~~i 120 (352)
...++++.||++ |+|+++.|--. . .+-. ..|++.|+=+.+.+
T Consensus 74 dp~~mi~~L~~~--g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~~ 150 (317)
T cd06599 74 DPAAFVAKFHER--GIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVD-FTNPEGREWWKEGV 150 (317)
T ss_pred CHHHHHHHHHHC--CCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeec-CCChHHHHHHHHHH
Confidence 356788888887 89999765211 0 0111 24778888888888
Q ss_pred HHHHHHcCCCeEEEeecCC
Q 046015 121 IEMARFYRFHGLDLHGVLP 139 (352)
Q Consensus 121 ~~~l~~~~~DGidiD~e~~ 139 (352)
.+.+.+.|+||+=+|...+
T Consensus 151 ~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 151 KEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred HHHHhcCCCcEEEecCCCC
Confidence 7888999999999998644
No 146
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.97 E-value=2.8e+02 Score=25.21 Aligned_cols=71 Identities=6% Similarity=-0.104 Sum_probs=47.9
Q ss_pred EeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCC------c-cchh-----------------hhcChhhHHHHHHHHHH
Q 046015 67 IFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGG------A-IFSS-----------------MINQSSNRRSFIKSSIE 122 (352)
Q Consensus 67 ~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~------~-~~~~-----------------~~~~~~~r~~f~~~i~~ 122 (352)
..++...-+..+.+++.||++ |+|+++.+--. . .+.. -..+++.++-+.+.+.+
T Consensus 66 ft~d~~~FPdp~~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~ 143 (292)
T cd06595 66 YSWNRKLFPDPEKLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHR 143 (292)
T ss_pred eEEChhcCCCHHHHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHH
Confidence 444433223456788888887 89999877211 0 1111 13466778888899999
Q ss_pred HHHHcCCCeEEEeecCC
Q 046015 123 MARFYRFHGLDLHGVLP 139 (352)
Q Consensus 123 ~l~~~~~DGidiD~e~~ 139 (352)
.+.+.|+||+=+|+..|
T Consensus 144 ~~~~~Gidg~W~D~~E~ 160 (292)
T cd06595 144 PLEKQGVDFWWLDWQQG 160 (292)
T ss_pred HHHhcCCcEEEecCCCC
Confidence 99999999999998544
No 147
>PRK09505 malS alpha-amylase; Reviewed
Probab=28.94 E-value=70 Score=33.06 Aligned_cols=29 Identities=14% Similarity=0.159 Sum_probs=25.2
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEeec
Q 046015 109 QSSNRRSFIKSSIEMARFYRFHGLDLHGV 137 (352)
Q Consensus 109 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e 137 (352)
|++-|+.+++-+..|++++|+||+-||--
T Consensus 435 n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaa 463 (683)
T PRK09505 435 GYTPRDYLTHWLSQWVRDYGIDGFRVDTA 463 (683)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEech
Confidence 45778889999999999999999999964
No 148
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=28.77 E-value=2.7e+02 Score=29.03 Aligned_cols=55 Identities=7% Similarity=0.032 Sum_probs=36.4
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC--CcchhHHHHHHHHHHHHHhhh
Q 046015 108 NQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK--CTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 108 ~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~~l~~lr~~l~~~ 162 (352)
-+++....|-+..-++|.+-|+|||-+|-...-. .++...=+++.+...+++...
T Consensus 378 v~Pe~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S 434 (777)
T PLN02711 378 VPPELAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTAS 434 (777)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHH
Confidence 3566778999999999999999999999764310 111112245555555555543
No 149
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=28.67 E-value=2.2e+02 Score=29.72 Aligned_cols=88 Identities=9% Similarity=0.061 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHhcCCCcE---EEEEEeC-Cc---c---c--h----------------------h------hhcChhhH
Q 046015 74 EQFFVNFTNTVKHRNPSVI---TLLSVWG-GA---I---F--S----------------------S------MINQSSNR 113 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~k---vllsiGg-~~---~---~--~----------------------~------~~~~~~~r 113 (352)
...++.+++.+|+++|++| |+-++-| |. . . . . -+-+++..
T Consensus 287 ~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~~~~g~glv~p~~~ 366 (747)
T PF05691_consen 287 PSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSIVKGGLGLVDPEDA 366 (747)
T ss_pred cccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCccccccccccCcccccCHHHH
Confidence 3568888889999998866 4455533 44 0 0 0 0 02356677
Q ss_pred HHHHHHHHHHHHHcCCCeEEEeecCCCC--CcchhHHHHHHHHHHHHHhh
Q 046015 114 RSFIKSSIEMARFYRFHGLDLHGVLPDK--CTNMTKLGTLFDEWRAEVTS 161 (352)
Q Consensus 114 ~~f~~~i~~~l~~~~~DGidiD~e~~~~--~~~~~~~~~~l~~lr~~l~~ 161 (352)
..|-+..-++|.+-|+|||-+|-+..-. ......-+++.+..++++..
T Consensus 367 ~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~ 416 (747)
T PF05691_consen 367 FRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEA 416 (747)
T ss_pred HHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHH
Confidence 8899999999999999999999875421 01112334555555555554
No 150
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=28.18 E-value=2.1e+02 Score=29.71 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEE-------e---CCc-c--------c-----------------hhhhcChhhHHHHHH
Q 046015 75 QFFVNFTNTVKHRNPSVITLLSV-------W---GGA-I--------F-----------------SSMINQSSNRRSFIK 118 (352)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsi-------G---g~~-~--------~-----------------~~~~~~~~~r~~f~~ 118 (352)
..++.+++.+++. |+.|++=| | |-. . + .-..+.+..|+-.++
T Consensus 265 ~EfK~mV~~lHka--GI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivD 342 (697)
T COG1523 265 KEFKDMVKALHKA--GIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVD 342 (697)
T ss_pred HHHHHHHHHHHHc--CCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHH
Confidence 4578888888887 99999766 1 110 0 1 111233566788899
Q ss_pred HHHHHHHHcCCCeEEEeecCC
Q 046015 119 SSIEMARFYRFHGLDLHGVLP 139 (352)
Q Consensus 119 ~i~~~l~~~~~DGidiD~e~~ 139 (352)
++.=|+++++.||.-+|.-..
T Consensus 343 sLrYWv~e~hVDGFRFDLa~~ 363 (697)
T COG1523 343 SLRYWVEEYHVDGFRFDLAGV 363 (697)
T ss_pred HHHHHHHHhCCCceeecchhh
Confidence 999999999999999998743
No 151
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=28.10 E-value=3.7e+02 Score=24.41 Aligned_cols=48 Identities=15% Similarity=0.088 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHcCCCeEEEeecCCC----------CCcchhHHHHHHHHHHHHHhhh
Q 046015 115 SFIKSSIEMARFYRFHGLDLHGVLPD----------KCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 115 ~f~~~i~~~l~~~~~DGidiD~e~~~----------~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
..+.+-.+-|.+-|||||-||+--+- ........+.|+.++++.....
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~ 183 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAA 183 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhc
Confidence 35556666777889999999974221 1234556788888998888765
No 152
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=28.01 E-value=3.9e+02 Score=23.39 Aligned_cols=61 Identities=11% Similarity=0.123 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHhcCCCcEEEEEEeCCc--------cchhhh----cChhhHHHHHHHHHHHHHHcCCCeEEE
Q 046015 74 EQFFVNFTNTVKHRNPSVITLLSVWGGA--------IFSSMI----NQSSNRRSFIKSSIEMARFYRFHGLDL 134 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvllsiGg~~--------~~~~~~----~~~~~r~~f~~~i~~~l~~~~~DGidi 134 (352)
.+.++.+++.++...|..+|++---+-- .....+ +..+.....++..+++.++-|+++||+
T Consensus 99 ~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdl 171 (245)
T KOG3035|consen 99 KDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDL 171 (245)
T ss_pred HHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeH
Confidence 3556777778888888887775433311 111111 123455678899999999999999999
No 153
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=27.95 E-value=1.2e+02 Score=30.41 Aligned_cols=46 Identities=20% Similarity=0.143 Sum_probs=32.2
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhh
Q 046015 118 KSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSES 163 (352)
Q Consensus 118 ~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~ 163 (352)
+|+++++.+.|+|=.-|||..|+..+..-.+.+.++.+.++++...
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~ 282 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVR 282 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999753222344555555555555543
No 154
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=27.87 E-value=3e+02 Score=24.11 Aligned_cols=106 Identities=11% Similarity=0.039 Sum_probs=55.9
Q ss_pred CCcEEEEEEeCCccchhhhc-ChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcC
Q 046015 89 PSVITLLSVWGGAIFSSMIN-QSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSG 167 (352)
Q Consensus 89 ~~~kvllsiGg~~~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~ 167 (352)
++.+-.+=|.=......+.. |......++..+.+... ...+-+|.|-...+++.-...+++||+.+++.+-
T Consensus 66 ~~Y~P~lHiDVYGtiG~~f~~d~~~~adYl~~l~~aA~-----P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~--- 137 (248)
T PF07476_consen 66 EDYRPVLHIDVYGTIGLAFDNDPDRMADYLAELEEAAA-----PFKLRIEGPMDAGSREAQIEALAELREELDRRGI--- 137 (248)
T ss_dssp TT---EEEEE-TTHHHHHTTT-HHHHHHHHHHHHHHHT-----TS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT----
T ss_pred CCCCccEEEEccchHHHHhCCCHHHHHHHHHHHHHhcC-----CCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCC---
Confidence 34444444433332222222 45555566666665554 4567789998778889999999999999998642
Q ss_pred CceeEEEEEecCCccccccCCChhhh--hccCcEEEeeccccCC
Q 046015 168 KSQLLLVMTSHHLPALESVSYPLDSM--QRNLDWIHVLTFDYYL 209 (352)
Q Consensus 168 ~~~~~ls~~~~~~~~~~~~~~d~~~l--~~~vD~i~~m~yd~~~ 209 (352)
+..|.+. .+... .-|+... ++.+|+|.|.|=|+.|
T Consensus 138 --~v~iVAD----EWCNT-~eDI~~F~da~A~dmVQIKtPDLGg 174 (248)
T PF07476_consen 138 --NVEIVAD----EWCNT-LEDIREFADAKAADMVQIKTPDLGG 174 (248)
T ss_dssp ---EEEEE-----TT--S-HHHHHHHHHTT-SSEEEE-GGGGSS
T ss_pred --CCeEEee----hhcCC-HHHHHHHHhcCCcCEEEecCCCccc
Confidence 2223222 22211 0144444 3579999999999765
No 155
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=27.61 E-value=5.7e+02 Score=26.49 Aligned_cols=44 Identities=11% Similarity=-0.034 Sum_probs=28.1
Q ss_pred EEeCcH----HHHHHHHHHHHhcCCceEEEEeccCCCChhhHHHHHHH
Q 046015 300 VNFDGV----ETIRSKVSFAKEKGLLGYHVFQLSNDDKWELSSAGMQL 343 (352)
Q Consensus 300 i~ydd~----~S~~~K~~~~~~~~l~Gi~~W~l~~Dd~~~l~~a~~~~ 343 (352)
|+.+|+ +.+...++-+++.|+.=|.+=...--|-.+++.+..+|
T Consensus 324 vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP 371 (671)
T PRK14582 324 VYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFP 371 (671)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccC
Confidence 344665 57777788888889887776554433445555555444
No 156
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=27.49 E-value=4.3e+02 Score=23.28 Aligned_cols=75 Identities=9% Similarity=0.171 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcC-CCeEEEeecCCCCCcchhHHHHHHHH
Q 046015 76 FFVNFTNTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYR-FHGLDLHGVLPDKCTNMTKLGTLFDE 154 (352)
Q Consensus 76 ~~~~~~~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~-~DGidiD~e~~~~~~~~~~~~~~l~~ 154 (352)
.+...-+.+|+..|++|+++. +.. +.....+++.+.+-+-.+.+... +|||-+-+-......+...+.+.|++
T Consensus 104 ~i~~af~~ar~~~P~a~l~~N--dy~----~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~ 177 (254)
T smart00633 104 YIEKAFRYAREADPDAKLFYN--DYN----TEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDR 177 (254)
T ss_pred HHHHHHHHHHHhCCCCEEEEe--ccC----CcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHH
Confidence 333444578999999999875 221 11112445544444444443333 79998854321111123345555555
Q ss_pred HH
Q 046015 155 WR 156 (352)
Q Consensus 155 lr 156 (352)
+.
T Consensus 178 ~~ 179 (254)
T smart00633 178 FA 179 (254)
T ss_pred HH
Confidence 53
No 157
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=27.22 E-value=2.5e+02 Score=25.84 Aligned_cols=30 Identities=10% Similarity=-0.154 Sum_probs=22.9
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEeecCC
Q 046015 109 QSSNRRSFIKSSIEMARFYRFHGLDLHGVLP 139 (352)
Q Consensus 109 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~ 139 (352)
|++.|+=|.+.+.. +.+.|+||+=+|+..|
T Consensus 136 np~a~~w~~~~~~~-~~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 136 DPAAQAWFHDNYKK-LIDQGVTGWWGDLGEP 165 (317)
T ss_pred CHHHHHHHHHHHHH-hhhCCccEEEecCCCc
Confidence 67777777666655 4788999999998654
No 158
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=27.09 E-value=2.4e+02 Score=24.63 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=39.3
Q ss_pred CCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhh
Q 046015 88 NPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 88 ~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
.++..++..|.|+ .+.+.|...++.+.+ .+++|+-|.=-.+. ++...+..+++.+.+.+...
T Consensus 52 ~~~~~l~gvIqGg-------~~~~lR~~s~~~l~~----~~~~g~~igGl~~~--~~~~~~~~~l~~i~~~lp~~ 113 (238)
T PF01702_consen 52 DKKQSLFGVIQGG-------DDKDLRRRSAEELSE----DGFDGYAIGGLSPG--EEKEERLEILEAIINNLPPD 113 (238)
T ss_dssp HCCSEEEEEE--T-------T-HHHHHHHHHHHHH----SS-SEEEE-SSSSS--SHHHHHHHHHHHHHHCS-TT
T ss_pred CCCcceeeeeCCC-------CCHHHHHHHHHHHHh----cccccccccCCcCC--CCHHHHHHHHHHHHhhCCcc
Confidence 4467788888774 245567777777776 37999999643332 46788888888888877644
No 159
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=26.86 E-value=1.6e+02 Score=27.49 Aligned_cols=42 Identities=19% Similarity=0.310 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHHhcCCceEEEEeccCCCChhhHHHHHHHhh
Q 046015 303 DGVETIRSKVSFAKEKGLLGYHVFQLSNDDKWELSSAGMQLLI 345 (352)
Q Consensus 303 dd~~S~~~K~~~~~~~~l~Gi~~W~l~~Dd~~~l~~a~~~~l~ 345 (352)
.|+++++..+++|+++|+-|+.+|---.+. ..++..--+.++
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf~g-k~lLe~p~~~~l 96 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWFNG-KRLLEKPLENLL 96 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeecCC-chHHHHHHHHHH
Confidence 489999999999999999999998777754 555544333344
No 160
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=26.50 E-value=1.1e+02 Score=26.79 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCCeEEEee
Q 046015 117 IKSSIEMARFYRFHGLDLHG 136 (352)
Q Consensus 117 ~~~i~~~l~~~~~DGidiD~ 136 (352)
....++.+++.|||||++.+
T Consensus 16 l~e~~~~~~e~G~~~vEl~~ 35 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLF 35 (254)
T ss_pred HHHHHHHHHHcCCCEEEecC
Confidence 34556666777888887754
No 161
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.11 E-value=3.5e+02 Score=26.02 Aligned_cols=96 Identities=3% Similarity=0.105 Sum_probs=48.3
Q ss_pred eEEEeCCCceEeeCCCChHHHHHHHHHHHhcCCCcEEEEEEeCCc-cchhhhcChhhHHHHH-----HHHHHHHHHcC--
Q 046015 57 FAFINSSTYNIFINSTSEQFFVNFTNTVKHRNPSVITLLSVWGGA-IFSSMINQSSNRRSFI-----KSSIEMARFYR-- 128 (352)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~kvllsiGg~~-~~~~~~~~~~~r~~f~-----~~i~~~l~~~~-- 128 (352)
+++.+|.+-.+... .+..+....+-+..|.++.+-|||+. .........+.|.... .++.+..+..+
T Consensus 36 Y~GfDPTa~slHlG-----hlv~l~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 36 YIGFDPTAPSLHLG-----HLVPLMKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred EEeeCCCCCccchh-----hHHHHHHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 45666654233333 23333322223334899999999987 2222222223344333 56666666655
Q ss_pred CC-eEEEeecCCCCCcchhHHHHHHHHHHHHH
Q 046015 129 FH-GLDLHGVLPDKCTNMTKLGTLFDEWRAEV 159 (352)
Q Consensus 129 ~D-GidiD~e~~~~~~~~~~~~~~l~~lr~~l 159 (352)
+| -..+-+ ........+|..|++++-..+
T Consensus 111 ld~k~~~v~--ns~w~~~~~y~~~l~~~g~~~ 140 (401)
T COG0162 111 LDNKAEFVN--NSDWLKKLNYLDFLRDVGKHF 140 (401)
T ss_pred CCcceEEEe--chHHhCcCCHHHHHHHHHhHc
Confidence 34 222211 112334567888888884333
No 162
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=25.92 E-value=76 Score=22.55 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=24.6
Q ss_pred chhhhcChhhHHHHHHHHHHHHHHcCCC
Q 046015 103 FSSMINQSSNRRSFIKSSIEMARFYRFH 130 (352)
Q Consensus 103 ~~~~~~~~~~r~~f~~~i~~~l~~~~~D 130 (352)
+.....+++.|++|.++=-.++++|++.
T Consensus 9 ~~~~~~~~~~re~f~~dp~a~~~~~~Lt 36 (77)
T cd07321 9 LEQLLVKPEVKERFKADPEAVLAEYGLT 36 (77)
T ss_pred HHHHhcCHHHHHHHHhCHHHHHHHcCCC
Confidence 4566778999999999999999999875
No 163
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=25.88 E-value=5.1e+02 Score=26.45 Aligned_cols=109 Identities=12% Similarity=-0.055 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCCcEEEEEEeCCc------------------cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecC
Q 046015 77 FVNFTNTVKHRNPSVITLLSVWGGA------------------IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVL 138 (352)
Q Consensus 77 ~~~~~~~lk~~~~~~kvllsiGg~~------------------~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~ 138 (352)
-..+++.+|++.|++++. .+||.. ++..++..--.-.+..+.+++.+++..-|-+.+ ..+
T Consensus 242 gA~Li~aLk~~~P~i~~~-GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~~l~~~~~~l~~~i~~~kPD~vIl-ID~ 319 (608)
T PRK01021 242 GGNLLKEIKALYPDIHCF-GVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALFKLWYRYRKLYKTILKTNPRTVIC-IDF 319 (608)
T ss_pred HHHHHHHHHhcCCCcEEE-EEccHHHHhCcCcccCChHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-eCC
Confidence 456788999999987654 788843 333444333334457788888888888886654 444
Q ss_pred CCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCChhhhhccCcEEEee
Q 046015 139 PDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVL 203 (352)
Q Consensus 139 ~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~m 203 (352)
|+= + ..+.|++|+. + .. .-+---++|..+.|.. .-...+.+++|.+...
T Consensus 320 PgF--N----lrLAK~lkk~-G-------i~-ipviyYVsPqVWAWR~-~Rikki~k~vD~ll~I 368 (608)
T PRK01021 320 PDF--H----FLLIKKLRKR-G-------YK-GKIVHYVCPSIWAWRP-KRKTILEKYLDLLLLI 368 (608)
T ss_pred CCC--C----HHHHHHHHhc-C-------CC-CCEEEEECccceeeCc-chHHHHHHHhhhheec
Confidence 431 1 2355555543 1 00 1233345555666663 4678899999987664
No 164
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=25.56 E-value=1.2e+02 Score=26.98 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=29.0
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhh
Q 046015 109 QSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 109 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
++..|+.+++ ++++..++++||+-||--.-- .. .++++++.+++..
T Consensus 143 n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~~---~~----~~~~~~~~~~~~~ 188 (316)
T PF00128_consen 143 NPEVREYIID-VLKFWIEEGIDGFRLDAAKHI---PK----EFWKEFRDEVKEE 188 (316)
T ss_dssp SHHHHHHHHH-HHHHHHHTTESEEEETTGGGS---SH----HHHHHHHHHHHHH
T ss_pred hhhhhhhhcc-cccchhhceEeEEEEcccccc---ch----hhHHHHhhhhhhh
Confidence 4455666777 555555667999999875321 12 6666666666654
No 165
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=25.34 E-value=2.8e+02 Score=24.02 Aligned_cols=63 Identities=10% Similarity=-0.010 Sum_probs=34.8
Q ss_pred EEEEEEeCCc--------------cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHH
Q 046015 92 ITLLSVWGGA--------------IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEW 155 (352)
Q Consensus 92 kvllsiGg~~--------------~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~l 155 (352)
++++.+||.- .+..++.+-....-=-+-+.+.+++.+.+-+-|||....+ .+++.+..+++++
T Consensus 131 ~~~ig~GG~HYapr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K~l~~-~~r~~i~~~l~~~ 207 (213)
T PF04414_consen 131 PVAIGFGGGHYAPRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWKSLKS-EDRRRIEELLEEL 207 (213)
T ss_dssp EEEEEE-S-TT-HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETTTS-H-HHHHHHHHHHHHH
T ss_pred ceeEEecCcccchhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHHHHHHHc
Confidence 9999999954 2223332221111112345556667788999999996653 6777777776664
No 166
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.27 E-value=4.2e+02 Score=23.66 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=31.1
Q ss_pred CcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCChhhhhccCcEEEeec
Q 046015 142 CTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHVLT 204 (352)
Q Consensus 142 ~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~m~ 204 (352)
|-....|.+||++|++.+... .+.++ .|+..+...+|++.+..
T Consensus 178 PI~a~~~~~LI~~L~~~lg~T---------~i~VT-----------HDl~s~~~i~Drv~~L~ 220 (263)
T COG1127 178 PISAGVIDELIRELNDALGLT---------VIMVT-----------HDLDSLLTIADRVAVLA 220 (263)
T ss_pred cchHHHHHHHHHHHHHhhCCE---------EEEEE-----------CChHHHHhhhceEEEEe
Confidence 445678999999999998632 22222 47788889999997653
No 167
>PF01630 Glyco_hydro_56: Hyaluronidase; InterPro: IPR018155 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 56 GH56 from CAZY comprises enzymes with only one known activity; hyaluronidase 3.2.1.35 from EC. The venom of Apis mellifera (Honeybee) contains several biologically-active peptides and two enzymes, one of which is a hyaluronidase []. The amino acid sequence of bee venom hyaluronidase contains 349 amino acids, and includes four cysteines and a number of potential glycosylation sites []. The sequence shows a high degree of similarity to PH-20, a membrane protein of mammalian sperm involved in sperm-egg adhesion, supporting the view that hyaluronidases play a role in fertilisation []. PH-20 is required for sperm adhesion to the egg zona pellucida; it is located on both the sperm plasma membrane and acrosomal membrane []. The amino acid sequence of the mature protein contains 468 amino acids, and includes six potential N-linked glycosylation sites and twelve cysteines, eight of which are tightly clustered near the C terminus [].; GO: 0004415 hyalurononglucosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1FCQ_A 1FCV_A 1FCU_A 2J88_A 2PE4_A 2ATM_A.
Probab=24.54 E-value=3.9e+02 Score=25.00 Aligned_cols=50 Identities=20% Similarity=0.108 Sum_probs=36.3
Q ss_pred CEEEEeCcHHHHHHHHHHHHhcCCceEEEEeccCCC-ChhhHHHHHHHhhh
Q 046015 297 TTWVNFDGVETIRSKVSFAKEKGLLGYHVFQLSNDD-KWELSSAGMQLLIT 346 (352)
Q Consensus 297 ~~~i~ydd~~S~~~K~~~~~~~~l~Gi~~W~l~~Dd-~~~l~~a~~~~l~~ 346 (352)
+..-.|-+.+.+..-+.-..+.|..||.+|.-..|. ...-|..++.-+.+
T Consensus 273 ~~~~~fLs~~DL~~TigesaalGa~GvViWG~s~~~~s~~~C~~l~~Yl~~ 323 (337)
T PF01630_consen 273 DSTDEFLSQEDLVNTIGESAALGAAGVVIWGSSNDVNSKESCQKLRNYLDT 323 (337)
T ss_dssp TEEEEE--HHHHHHHHHHHHHTT-SEEEEE--GGGSSSHHHHHHHHHHHHH
T ss_pred cCccccchhhHHHHHHHHHHHcCCCeEEEeeccccccChHHHHHHHHHHHh
Confidence 344568888899999999999999999999988775 67888888776644
No 168
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=24.29 E-value=3.9e+02 Score=22.42 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEE--eCCc-cchhhhc-ChhhHHHHHHHHHHHHHHcCCCeEEE
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSV--WGGA-IFSSMIN-QSSNRRSFIKSSIEMARFYRFHGLDL 134 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsi--Gg~~-~~~~~~~-~~~~r~~f~~~i~~~l~~~~~DGidi 134 (352)
-......|++.+|+++|++.|++.- .... .+..-.. .........+.+++-+++.|...|.+
T Consensus 76 ~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~ 141 (178)
T PF14606_consen 76 FRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYY 141 (178)
T ss_dssp HHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEE
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 3466788889999999999888543 2111 2222111 22344456666777777777766654
No 169
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=23.95 E-value=6e+02 Score=23.71 Aligned_cols=72 Identities=11% Similarity=0.203 Sum_probs=44.4
Q ss_pred HHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCC--CeEEEeecCCCC-CcchhHHHHHHHHHHHH
Q 046015 82 NTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRF--HGLDLHGVLPDK-CTNMTKLGTLFDEWRAE 158 (352)
Q Consensus 82 ~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~--DGidiD~e~~~~-~~~~~~~~~~l~~lr~~ 158 (352)
+.+|+..|+.|+++- .++ .........++-+++.-|++.|. |||-+-.-.... +........|.+..+..
T Consensus 178 ~~AreadP~AkL~~N-----DY~--ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~~~~k~G 250 (345)
T COG3693 178 HIAREADPDAKLVIN-----DYS--IEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALLKFSKLG 250 (345)
T ss_pred HHHHhhCCCceEEee-----ccc--ccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHHHHhhcC
Confidence 468888899998864 222 33345566777888888888895 998664332211 23444555566555554
Q ss_pred Hh
Q 046015 159 VT 160 (352)
Q Consensus 159 l~ 160 (352)
++
T Consensus 251 l~ 252 (345)
T COG3693 251 LP 252 (345)
T ss_pred CC
Confidence 43
No 170
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.65 E-value=3.8e+02 Score=23.46 Aligned_cols=69 Identities=7% Similarity=0.043 Sum_probs=50.6
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC-CcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCC
Q 046015 104 SSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK-CTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHL 180 (352)
Q Consensus 104 ~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~ 180 (352)
.....+...++.+.+-+++..+.+.-|=|-||=-.+.. .++..+...|++.+|...+. ++++-+++.+.
T Consensus 99 ~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~--------gKvIilTvhp~ 168 (235)
T COG2874 99 EPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDL--------GKVIILTVHPS 168 (235)
T ss_pred cccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhC--------CCEEEEEeChh
Confidence 34455778889999999999999999999998654432 23456778888888877753 35677776654
No 171
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=23.44 E-value=4.6e+02 Score=23.56 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHH-hcCC--CcEEEEEEeCCc---------cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEe-ecCCC
Q 046015 74 EQFFVNFTNTVK-HRNP--SVITLLSVWGGA---------IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLH-GVLPD 140 (352)
Q Consensus 74 ~~~~~~~~~~lk-~~~~--~~kvllsiGg~~---------~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD-~e~~~ 140 (352)
.+++.++...-+ ..++ +.+-++=||... .|..+..+ .....+..-|++.||+=+++| |+...
T Consensus 75 ~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aT-----E~S~~Mr~rL~~kg~~vl~~~~w~~~~ 149 (265)
T PF05219_consen 75 EEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYAT-----EASPPMRWRLSKKGFTVLDIDDWQQTD 149 (265)
T ss_pred HHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEee-----cCCHHHHHHHHhCCCeEEehhhhhccC
Confidence 445556654221 1123 345577787544 23333322 344667788899999877764 55222
Q ss_pred CC----------cchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccc
Q 046015 141 KC----------TNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPAL 183 (352)
Q Consensus 141 ~~----------~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~ 183 (352)
.. +-...=..+++++|..++..| .++|.+.+|..|..
T Consensus 150 ~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G------~lilAvVlP~~pyV 196 (265)
T PF05219_consen 150 FKFDVISCLNVLDRCDRPLTLLRDIRRALKPNG------RLILAVVLPFRPYV 196 (265)
T ss_pred CceEEEeehhhhhccCCHHHHHHHHHHHhCCCC------EEEEEEEecccccE
Confidence 10 111234689999999998754 47888888865443
No 172
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.36 E-value=1.9e+02 Score=25.60 Aligned_cols=44 Identities=7% Similarity=-0.003 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhh
Q 046015 119 SSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 119 ~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
..+..+.+.|+|+++|....|........-...++++++.+.+.
T Consensus 14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (273)
T smart00518 14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKEN 57 (273)
T ss_pred HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 45667788899999999887743211122234577777777755
No 173
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=23.13 E-value=78 Score=16.80 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=16.2
Q ss_pred EEeCcHHHHHHHHHHHHhcCC
Q 046015 300 VNFDGVETIRSKVSFAKEKGL 320 (352)
Q Consensus 300 i~ydd~~S~~~K~~~~~~~~l 320 (352)
+.++ .++++.+++|.++.|+
T Consensus 11 l~~~-~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 11 LGYS-EKKLKPKVEFLKELGF 30 (31)
T ss_pred cccc-HHHhhHHHHHHHHcCC
Confidence 4555 8999999999997765
No 174
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=22.75 E-value=2.2e+02 Score=25.98 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeecCC--CCCcchhHHHHHHHHHHHHHhhhhhhcC-CceeEEEEEecCCccccccCCC
Q 046015 113 RRSFIKSSIEMARFYRFHGLDLHGVLP--DKCTNMTKLGTLFDEWRAEVTSESRKSG-KSQLLLVMTSHHLPALESVSYP 189 (352)
Q Consensus 113 r~~f~~~i~~~l~~~~~DGidiD~e~~--~~~~~~~~~~~~l~~lr~~l~~~~~~~~-~~~~~ls~~~~~~~~~~~~~~d 189 (352)
.+-|-.++..+++-...- ++-.-.| .+.++-....+++++.++.+..++.... ...+-+.+-+|. ..+.
T Consensus 119 p~~f~~QlrAilra~~~g--~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPs------aal~ 190 (293)
T PF02896_consen 119 PELFRTQLRAILRAAAEG--NLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPS------AALM 190 (293)
T ss_dssp HHHHHHHHHHHHHHHHHS--EEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHH------HHHT
T ss_pred hhhHHHHHHHHHHHHhhc--CCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhH------HHHH
Confidence 345777777777654432 5544545 3445666777888888888876643221 223334444442 2356
Q ss_pred hhhhhccCcEEEeecccc
Q 046015 190 LDSMQRNLDWIHVLTFDY 207 (352)
Q Consensus 190 ~~~l~~~vD~i~~m~yd~ 207 (352)
..++.+.+||+.|-|-|+
T Consensus 191 ~~~~~~~~DF~SIGtNDL 208 (293)
T PF02896_consen 191 ADEFAKEVDFFSIGTNDL 208 (293)
T ss_dssp HHHHHTTSSEEEEEHHHH
T ss_pred HHHHHHHCCEEEEChhHH
Confidence 778999999999988775
No 175
>PRK00865 glutamate racemase; Provisional
Probab=22.74 E-value=4.6e+02 Score=23.32 Aligned_cols=55 Identities=15% Similarity=0.030 Sum_probs=41.2
Q ss_pred HHHHhcCCCcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeec
Q 046015 82 NTVKHRNPSVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGV 137 (352)
Q Consensus 82 ~~lk~~~~~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e 137 (352)
+.++++.|+..++ =+|....+..-..+++....++.++++++.+.|.|.|.|-+-
T Consensus 22 ~~i~~~lp~~~~i-Y~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCN 76 (261)
T PRK00865 22 REIRRLLPDEHII-YVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACN 76 (261)
T ss_pred HHHHHHCCCCCEE-EEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 4677888887655 344433444444677888899999999999999999999776
No 176
>PRK09989 hypothetical protein; Provisional
Probab=22.72 E-value=1.9e+02 Score=25.54 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=24.6
Q ss_pred HHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhh
Q 046015 118 KSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 118 ~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~ 162 (352)
...++.+++.|||||+|-..+.. -.+++++.+++.
T Consensus 18 ~~~l~~~~~~Gfd~VEl~~~~~~----------~~~~~~~~l~~~ 52 (258)
T PRK09989 18 IERFAAARKAGFDAVEFLFPYDY----------STLQIQKQLEQN 52 (258)
T ss_pred HHHHHHHHHcCCCEEEECCcccC----------CHHHHHHHHHHc
Confidence 45677889999999999543211 156788888765
No 177
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=22.64 E-value=4.3e+02 Score=22.64 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=39.3
Q ss_pred HHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCChhhhhccCcEEEe
Q 046015 123 MARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYPLDSMQRNLDWIHV 202 (352)
Q Consensus 123 ~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~l~~~vD~i~~ 202 (352)
-+.+-|.+.+-|++|-.. + ...+++.+|+ . +...-+++-|..... ++..+.+.+|++.+
T Consensus 82 ~~a~agas~~tfH~E~~q---~---~~~lv~~ir~----~-------Gmk~G~alkPgT~Ve----~~~~~~~~~D~vLv 140 (224)
T KOG3111|consen 82 QMAKAGASLFTFHYEATQ---K---PAELVEKIRE----K-------GMKVGLALKPGTPVE----DLEPLAEHVDMVLV 140 (224)
T ss_pred HHHhcCcceEEEEEeecc---C---HHHHHHHHHH----c-------CCeeeEEeCCCCcHH----HHHHhhccccEEEE
Confidence 334558999999999432 2 3445555443 2 345666765543222 24456678999999
Q ss_pred eccc
Q 046015 203 LTFD 206 (352)
Q Consensus 203 m~yd 206 (352)
||-.
T Consensus 141 MtVe 144 (224)
T KOG3111|consen 141 MTVE 144 (224)
T ss_pred EEec
Confidence 9976
No 178
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=22.56 E-value=4.1e+02 Score=21.32 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHhcCCCcEEEE-EEeCCccch-hhhcChhhHHHHHHHHHHHHHHcCCCeEEEe
Q 046015 74 EQFFVNFTNTVKHRNPSVITLL-SVWGGAIFS-SMINQSSNRRSFIKSSIEMARFYRFHGLDLH 135 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvll-siGg~~~~~-~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD 135 (352)
...+..+++.++++.|+.+|++ ++--..... ...........+.+.+.++.+++++.=||+.
T Consensus 74 ~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~id~~ 137 (174)
T cd01841 74 IKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDEIKTRSNTRIQRLNDAIKELAPELGVTFIDLN 137 (174)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccccccCCHHHHHHHHHHHHHHHHHCCCEEEEcH
Confidence 3456677777777778887664 321111000 0011234556677777777777775555543
No 179
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.51 E-value=4.3e+02 Score=21.51 Aligned_cols=60 Identities=10% Similarity=0.020 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCc--cchhhhcChhhHHHHHHHHHHHHHHcCCCeEEE
Q 046015 75 QFFVNFTNTVKHRNPSVITLLSVWGGA--IFSSMINQSSNRRSFIKSSIEMARFYRFHGLDL 134 (352)
Q Consensus 75 ~~~~~~~~~lk~~~~~~kvllsiGg~~--~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidi 134 (352)
..+..+++.+++++|+.+|++.----. .......+....+.+.+.+.++.+++++.=||+
T Consensus 93 ~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 154 (188)
T cd01827 93 KDYETMIDSFQALPSKPKIYICYPIPAYYGDGGFINDNIIKKEIQPMIDKIAKKLNLKLIDL 154 (188)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEeCCcccccCCCccchHHHHHHHHHHHHHHHHHcCCcEEEc
Confidence 467788888888888888876532100 000112233344566677777778887654544
No 180
>PRK13840 sucrose phosphorylase; Provisional
Probab=22.35 E-value=2.7e+02 Score=27.62 Aligned_cols=54 Identities=7% Similarity=0.072 Sum_probs=34.6
Q ss_pred cChhhHHHHHHHHHHHHHHcCCCeEEEee-----cCCCC-CcchhHHHHHHHHHHHHHhhh
Q 046015 108 NQSSNRRSFIKSSIEMARFYRFHGLDLHG-----VLPDK-CTNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 108 ~~~~~r~~f~~~i~~~l~~~~~DGidiD~-----e~~~~-~~~~~~~~~~l~~lr~~l~~~ 162 (352)
.|++-++.+.+-+ .+..+.|.||+-+|- +.++. +.+.+.--.|++++|+.++..
T Consensus 167 ~NP~V~~~i~~il-~fwl~~GVDgfRLDAv~~l~K~~gt~c~~~pe~~~~l~~lr~~~~~~ 226 (495)
T PRK13840 167 HSAAGWEYLMSIL-DRFAASHVTLIRLDAAGYAIKKAGTSCFMIPETFEFIDRLAKEARAR 226 (495)
T ss_pred CCHHHHHHHHHHH-HHHHHCCCCEEEEechhhhhcCCCCCcCCChHHHHHHHHHHHHhhhc
Confidence 4677777777655 555567999999994 22221 222334457888888888653
No 181
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=21.49 E-value=85 Score=30.44 Aligned_cols=55 Identities=4% Similarity=0.003 Sum_probs=37.5
Q ss_pred hhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHh
Q 046015 104 SSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVT 160 (352)
Q Consensus 104 ~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~ 160 (352)
.+.++|...|+..+..|+++|.++|||| -|-..+.-. .....|....|-|...++
T Consensus 97 pRplrdk~yqq~c~~~I~~yL~engfd~-pis~k~l~~-PS~k~F~~IFK~LY~~lD 151 (622)
T COG5185 97 PRPLRDKNYQQACQEEIYDYLKENGFDI-PISIKFLKQ-PSQKGFIIIFKWLYLRLD 151 (622)
T ss_pred CcccccchHHHHHHHHHHHHHHHcCCCc-chhHHHhcC-CccccHHHHHHHHHhccC
Confidence 4556788999999999999999999998 222211111 223456677776666665
No 182
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=21.10 E-value=2.8e+02 Score=24.43 Aligned_cols=72 Identities=6% Similarity=-0.019 Sum_probs=47.3
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCC-cchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccC
Q 046015 109 QSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKC-TNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVS 187 (352)
Q Consensus 109 ~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~-~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~ 187 (352)
||... .....+++-+...|-|+|-| .++. -..++...+++++|+..+ |-+-+.+
T Consensus 23 DP~k~-~~~~ei~~~~~~~GTDaImI----GGS~gvt~~~~~~~v~~ik~~~~------------lPvilfP-------- 77 (240)
T COG1646 23 DPDKT-EEADEIAEAAAEAGTDAIMI----GGSDGVTEENVDNVVEAIKERTD------------LPVILFP-------- 77 (240)
T ss_pred Ccccc-cccHHHHHHHHHcCCCEEEE----CCcccccHHHHHHHHHHHHhhcC------------CCEEEec--------
Confidence 55544 67788888889999999988 3332 233567788888877543 2222111
Q ss_pred CChhhhhccCcEEEeecc
Q 046015 188 YPLDSMQRNLDWIHVLTF 205 (352)
Q Consensus 188 ~d~~~l~~~vD~i~~m~y 205 (352)
.+...+.+++|.+.+|+-
T Consensus 78 ~~~~~is~~aDavff~sv 95 (240)
T COG1646 78 GSPSGISPYADAVFFPSV 95 (240)
T ss_pred CChhccCccCCeEEEEEE
Confidence 234567789999999873
No 183
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=21.07 E-value=2.8e+02 Score=23.49 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHHHHHHHHHHh
Q 046015 117 IKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVT 160 (352)
Q Consensus 117 ~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~ 160 (352)
++.+.+++.+.++|||.+.-..+ ..+++++|+.+.
T Consensus 62 ~~~i~~ia~~~~~d~Vqlhg~e~---------~~~~~~l~~~~~ 96 (203)
T cd00405 62 LEEILEIAEELGLDVVQLHGDES---------PEYCAQLRARLG 96 (203)
T ss_pred HHHHHHHHHhcCCCEEEECCCCC---------HHHHHHHHhhcC
Confidence 56677788899999999975521 246677776663
No 184
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=21.01 E-value=3.1e+02 Score=24.27 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCCCcEEE-EEEeCCccchhhhcC----hh--------hHHHHHHHHHHHHHHcC---CCeEEEeec
Q 046015 78 VNFTNTVKHRNPSVITL-LSVWGGAIFSSMINQ----SS--------NRRSFIKSSIEMARFYR---FHGLDLHGV 137 (352)
Q Consensus 78 ~~~~~~lk~~~~~~kvl-lsiGg~~~~~~~~~~----~~--------~r~~f~~~i~~~l~~~~---~DGidiD~e 137 (352)
.++.+++|+.-|+++|+ ++.-||..+.....+ +. -..=|++++.+.=++.| +|-+||+|-
T Consensus 160 i~~AkaiK~~DP~a~v~GP~~wgw~~y~~~~~d~~~~~d~~~~g~~~fl~wyL~qm~~~~~~~G~RLLDvlDiH~Y 235 (239)
T PF12891_consen 160 IEYAKAIKAADPDAKVFGPVEWGWCGYFSSADDAPGWPDRAAHGNYDFLPWYLDQMKEAEKSTGKRLLDVLDIHYY 235 (239)
T ss_dssp HHHHHHHHHH-TTSEEEEEEE-SHHHHHHTTTHHTTHHHHHHTTT-SHHHHHHHHHHHHHHHHTS-S-SEEEEEE-
T ss_pred HHHHHHHHhhCCCCeEeechhhccceeeccCccccccccccccCCcchHHHHHHHHHHhhhhcCceeeeeeeeeec
Confidence 44455788899999999 555555533333221 11 11225566655555667 799999986
No 185
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=21.00 E-value=5.7e+02 Score=22.42 Aligned_cols=88 Identities=8% Similarity=-0.035 Sum_probs=49.5
Q ss_pred CcEEEEEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCC-----------CcchhHHHHHHHHHHHH
Q 046015 90 SVITLLSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDK-----------CTNMTKLGTLFDEWRAE 158 (352)
Q Consensus 90 ~~kvllsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~-----------~~~~~~~~~~l~~lr~~ 158 (352)
+.++.++|++. +++ .+.. ++..+.+ ++|+|||+.--|.. -.+.+...++++.+++.
T Consensus 67 ~~~vivnv~~~--------~~e---e~~~-~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~ 133 (231)
T TIGR00736 67 RALVSVNVRFV--------DLE---EAYD-VLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL 133 (231)
T ss_pred cCCEEEEEecC--------CHH---HHHH-HHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC
Confidence 56899999993 222 2222 2333444 69999999887752 13556677777777721
Q ss_pred HhhhhhhcCCceeEEEEEecCCccccccCCChhh-h-hccCcEEEe
Q 046015 159 VTSESRKSGKSQLLLVMTSHHLPALESVSYPLDS-M-QRNLDWIHV 202 (352)
Q Consensus 159 l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d~~~-l-~~~vD~i~~ 202 (352)
+.-+++-+.+...... ..++.+ + ..-+|.+.|
T Consensus 134 -----------~~PVsvKiR~~~~~~~-~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 134 -----------NKPIFVKIRGNCIPLD-ELIDALNLVDDGFDGIHV 167 (231)
T ss_pred -----------CCcEEEEeCCCCCcch-HHHHHHHHHHcCCCEEEE
Confidence 1347776665421111 012222 2 224888877
No 186
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=20.85 E-value=2e+02 Score=20.70 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=36.3
Q ss_pred HHHcCCCeEEEeecC----CCC----------CcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCccccccCCC
Q 046015 124 ARFYRFHGLDLHGVL----PDK----------CTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALESVSYP 189 (352)
Q Consensus 124 l~~~~~DGidiD~e~----~~~----------~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~~~~~d 189 (352)
+.+++.|.-.+-||- |.. ....+.+..++++.-+.+++.. |.-.||+..-.. . .-.
T Consensus 2 v~~~~~~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~d-----P~~pvt~g~~~~----~-~~~ 71 (88)
T PF12876_consen 2 VTRFGYDPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVD-----PSQPVTSGFWGG----D-WED 71 (88)
T ss_dssp HHHTT-GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT------TTS-EE--B--S------TTH
T ss_pred chhhcCCCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhC-----CCCcEEeecccC----C-HHH
Confidence 566777776677752 220 1124567888888888888763 334466553221 1 112
Q ss_pred hhhhh-ccCcEEEeecc
Q 046015 190 LDSMQ-RNLDWIHVLTF 205 (352)
Q Consensus 190 ~~~l~-~~vD~i~~m~y 205 (352)
+..+. +.+|++.+-.|
T Consensus 72 ~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 72 LEQLQAENLDVISFHPY 88 (88)
T ss_dssp HHHS--TT-SSEEB-EE
T ss_pred HHHhchhcCCEEeeecC
Confidence 44555 78898876554
No 187
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=20.84 E-value=2e+02 Score=26.80 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHcCCCeEEEeecCCCC----------CcchhHHHHHHHHHHHHHh
Q 046015 111 SNRRSFIKSSIEMARFYRFHGLDLHGVLPDK----------CTNMTKLGTLFDEWRAEVT 160 (352)
Q Consensus 111 ~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~----------~~~~~~~~~~l~~lr~~l~ 160 (352)
..++.+++.++..+.+.|+.||.+||..-.. ..+.+.+..++..+++.+.
T Consensus 87 ~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G~t~D~~~~l~~l~~~~~ 146 (345)
T COG0429 87 SSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSGETEDIRFFLDWLKARFP 146 (345)
T ss_pred CCcCHHHHHHHHHHHhcCCeEEEEecccccCCcccCcceecccchhHHHHHHHHHHHhCC
Confidence 3445699999999999999999999984321 2345677788888877554
No 188
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=20.72 E-value=6.8e+02 Score=23.19 Aligned_cols=87 Identities=9% Similarity=0.089 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHhcCCCcEEEEEEeCCc-------cchhhhc------------------C--hhhHHHHHHHHHHHHH
Q 046015 73 SEQFFVNFTNTVKHRNPSVITLLSVWGGA-------IFSSMIN------------------Q--SSNRRSFIKSSIEMAR 125 (352)
Q Consensus 73 ~~~~~~~~~~~lk~~~~~~kvllsiGg~~-------~~~~~~~------------------~--~~~r~~f~~~i~~~l~ 125 (352)
+++.++++++.++++ |+.|++.|.--. .+..+.. | ....-+|+++|++-+.
T Consensus 73 T~~di~elv~yA~~r--gI~vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~ 150 (329)
T cd06568 73 TQEDYKDIVAYAAER--HITVVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELA 150 (329)
T ss_pred CHHHHHHHHHHHHHc--CCEEEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 567789999888888 999999996533 1111111 1 1234468888888777
Q ss_pred HcCCCeEEEee---cCCCCCcchhHHHHHHHHHHHHHhhhhh
Q 046015 126 FYRFHGLDLHG---VLPDKCTNMTKLGTLFDEWRAEVTSESR 164 (352)
Q Consensus 126 ~~~~DGidiD~---e~~~~~~~~~~~~~~l~~lr~~l~~~~~ 164 (352)
+. |.+--|+. |.+. ...+.|..|++++.+.+.+.++
T Consensus 151 ~~-f~~~~iHiGgDE~~~--~~~~~~~~f~~~~~~~v~~~Gk 189 (329)
T cd06568 151 AL-TPGPYIHIGGDEAHS--TPHDDYAYFVNRVRAIVAKYGK 189 (329)
T ss_pred Hh-CCCCeEEEecccCCC--CchHHHHHHHHHHHHHHHHCCC
Confidence 64 55544444 3332 3456788999999999987643
No 189
>PRK05434 phosphoglyceromutase; Provisional
Probab=20.57 E-value=6.8e+02 Score=24.93 Aligned_cols=79 Identities=14% Similarity=0.139 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHhcCCCcEEE--EEEeCCccchhhhcChhhHHHHHHHHHHHHHHcCCCeEEEeecCCCCCcchhHHHHH
Q 046015 74 EQFFVNFTNTVKHRNPSVITL--LSVWGGAIFSSMINQSSNRRSFIKSSIEMARFYRFHGLDLHGVLPDKCTNMTKLGTL 151 (352)
Q Consensus 74 ~~~~~~~~~~lk~~~~~~kvl--lsiGg~~~~~~~~~~~~~r~~f~~~i~~~l~~~~~DGidiD~e~~~~~~~~~~~~~~ 151 (352)
.+.+..+++.+|+.+..+-++ +|=|| -++...-...++++++++|+.=|-|+.-.-+.+........+
T Consensus 95 n~~~~~~~~~~~~~~~~lHl~GL~Sdgg----------VHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~ 164 (507)
T PRK05434 95 NPALLDAIDKAKKNGGALHLMGLLSDGG----------VHSHIDHLFALLELAKEEGVKKVYVHAFLDGRDTPPKSALGY 164 (507)
T ss_pred CHHHHHHHHHHHhcCCeEEEEEeccCCC----------cccHHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCchhHHHH
Confidence 345677777777665445554 55555 256667788899999999997788877655544555667788
Q ss_pred HHHHHHHHhhh
Q 046015 152 FDEWRAEVTSE 162 (352)
Q Consensus 152 l~~lr~~l~~~ 162 (352)
|++|.+.+.+.
T Consensus 165 i~~l~~~~~~~ 175 (507)
T PRK05434 165 LEELEAKLAEL 175 (507)
T ss_pred HHHHHHHHHHh
Confidence 88888888754
No 190
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=20.53 E-value=2.5e+02 Score=22.33 Aligned_cols=53 Identities=2% Similarity=-0.090 Sum_probs=39.6
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCeEEEe-ecCCCCCcchhHHHHHHHHHHHHHhh
Q 046015 109 QSSNRRSFIKSSIEMARFYRFHGLDLH-GVLPDKCTNMTKLGTLFDEWRAEVTS 161 (352)
Q Consensus 109 ~~~~r~~f~~~i~~~l~~~~~DGidiD-~e~~~~~~~~~~~~~~l~~lr~~l~~ 161 (352)
+|++-..+.+.+++++++.+-.=|-|| .||.--..+-+...+|+..||...-.
T Consensus 56 ~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l~NgF~~v~KFL~~LkD~~~~ 109 (136)
T PF05763_consen 56 SPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLILENGFESVLKFLASLKDYALL 109 (136)
T ss_pred CchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHHHcCHHHHHHHHHHhHHHeec
Confidence 577778899999999999554457777 57665445667778888888876643
No 191
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=20.30 E-value=7.2e+02 Score=23.58 Aligned_cols=88 Identities=10% Similarity=0.035 Sum_probs=55.4
Q ss_pred hhhHHHHHHHHHHHHHHcC-CCeEEEeecCCCCCcchhHHHHHHHHHHHHHhhhhhhcCCceeEEEEEecCCcccc--cc
Q 046015 110 SSNRRSFIKSSIEMARFYR-FHGLDLHGVLPDKCTNMTKLGTLFDEWRAEVTSESRKSGKSQLLLVMTSHHLPALE--SV 186 (352)
Q Consensus 110 ~~~r~~f~~~i~~~l~~~~-~DGidiD~e~~~~~~~~~~~~~~l~~lr~~l~~~~~~~~~~~~~ls~~~~~~~~~~--~~ 186 (352)
++..+.+.+.|.+.+++-+ ++|+.|=-.-.+. ...-.-..+++.||+.+++. ..+++++-|.+... -.
T Consensus 79 ~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GG-TGSG~gs~l~e~l~~~y~~~--------~~~~~~v~P~~~~~~~v~ 149 (379)
T cd02190 79 HQYIDSILEKIRKAAEKCDSLQSFFILHSLGGG-TGSGLGTYVLELLADEFPEV--------YRFVTSVYPSADDDVITS 149 (379)
T ss_pred hhHHHHHHHHHHHHHhhCcCcceEEEEeecCCC-cchhHHHHHHHHHHHhcCcc--------ceEEEeecCCCCCCceec
Confidence 4556677888888888766 7899886553331 22233446778889998743 46666655543211 01
Q ss_pred CC----ChhhhhccCcEEEeeccc
Q 046015 187 SY----PLDSMQRNLDWIHVLTFD 206 (352)
Q Consensus 187 ~~----d~~~l~~~vD~i~~m~yd 206 (352)
.| -+..|.+++|.+.+...|
T Consensus 150 ~yN~~lsl~~l~~~~d~~i~~~N~ 173 (379)
T cd02190 150 PYNSVLALRELIEHADCVLPIENQ 173 (379)
T ss_pred ccHHHHHHHHHHHhCCeeEEeccH
Confidence 13 367788999999876544
No 192
>PRK12677 xylose isomerase; Provisional
Probab=20.16 E-value=3.4e+02 Score=25.88 Aligned_cols=46 Identities=4% Similarity=0.010 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCC-cchhHHHHHHHHHHHHHhhh
Q 046015 117 IKSSIEMARFYRFHGLDLHGVLPDKC-TNMTKLGTLFDEWRAEVTSE 162 (352)
Q Consensus 117 ~~~i~~~l~~~~~DGidiD~e~~~~~-~~~~~~~~~l~~lr~~l~~~ 162 (352)
...++..+.+.||+||++..+.+... .+...-...++++++.+.+.
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~ 79 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDET 79 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHc
Confidence 45677888999999999975522100 11111124677888888766
Done!