BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046016
         (1112 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XNG|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
           Helicobacter Pylori
 pdb|1XNG|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
           Helicobacter Pylori
 pdb|1XNH|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
           Helicobacter Pylori
          Length = 268

 Score = 32.3 bits (72), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 127 QKAIWKPKSYGTVSGQTSAEVGNLPADDTATAIKGNASEMTTAQKSRMDLSKLFRGNLLE 186
           QK  +K   YG   G  SA VG L         K NA  +       M  +K    NL E
Sbjct: 21  QKRGFKKVVYGLSGGLDSAVVGVL----CQKVFKENAHALLMPSSVSMPENKTDALNLCE 76

Query: 187 NFTVDNSTYSLAEVRATFYPKFEN----EKSDQEIRMRM 221
            F++  + YS+A   A F   F++     K +   R+RM
Sbjct: 77  KFSIPYTEYSIAPYDAIFSSHFKDASLTRKGNFCARLRM 115


>pdb|2HM7|A Chain A, Crystal Structure Analysis Of The G84s Est2 Mutant
          Length = 310

 Score = 31.2 bits (69), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 1010 VPFESAVKQVLEQLKLIAKGEYKAPSTEKRNFGTIVFAAVSL-PVTEIQSLLVELAGKDP 1068
            +P +  ++QVL+QL  +   +YK  S ++      +F  V   PV E++   ++L G+  
Sbjct: 1    MPLDPVIQQVLDQLNRMPAPDYKHLSAQQFRSQQSLFPPVKKEPVAEVREFDMDLPGRTL 60

Query: 1069 TIDLFFKEDLE 1079
             + ++  E +E
Sbjct: 61   KVRMYRPEGVE 71


>pdb|1QZ3|A Chain A, Crystal Structure Of Mutant M211sR215L OF CARBOXYLESTERASE
            Est2 Complexed With Hexadecanesulfonate
 pdb|1U4N|A Chain A, Crystal Structure Analysis Of The M211sR215L EST2 MUTANT
          Length = 310

 Score = 31.2 bits (69), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)

Query: 1010 VPFESAVKQVLEQLKLIAKGEYKAPSTEKRNFGTIVFAAVSL-PVTEIQSLLVELAGKDP 1068
            +P +  ++QVL+QL  +   +YK  S ++      +F  V   PV E++   ++L G+  
Sbjct: 1    MPLDPVIQQVLDQLNRMPAPDYKHLSAQQFRSQQSLFPPVKKEPVAEVREFDMDLPGRTL 60

Query: 1069 TIDLFFKEDLE 1079
             + ++  E +E
Sbjct: 61   KVRMYRPEGVE 71


>pdb|1HW6|A Chain A, Crystal Structure Of Apo-2,5-Diketo-D-Gluconate Reductase
          Length = 278

 Score = 30.8 bits (68), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 98  SIAENDGQSSVPSTGFGSFQLPNQSPTQGQKAIWKPKSYGTVSGQTSAEVGN 149
           SI  NDG +S+P  G+G F++P   P   Q+A+ +    G     T+A  GN
Sbjct: 5   SIVLNDG-NSIPQLGYGVFKVP---PADTQRAVEEALEVGYRHIDTAAIYGN 52


>pdb|1A80|A Chain A, Native 2,5-Diketo-D-Gluconic Acid Reductase A From
           Corynbacterium Sp. Complexed With Nadph
          Length = 277

 Score = 30.8 bits (68), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 98  SIAENDGQSSVPSTGFGSFQLPNQSPTQGQKAIWKPKSYGTVSGQTSAEVGN 149
           SI  NDG +S+P  G+G F++P   P   Q+A+ +    G     T+A  GN
Sbjct: 4   SIVLNDG-NSIPQLGYGVFKVP---PADTQRAVEEALEVGYRHIDTAAIYGN 51


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,168,280
Number of Sequences: 62578
Number of extensions: 1408795
Number of successful extensions: 3085
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3085
Number of HSP's gapped (non-prelim): 10
length of query: 1112
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1003
effective length of database: 8,152,335
effective search space: 8176792005
effective search space used: 8176792005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)