BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046016
         (1112 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q64687|SIA8A_MOUSE Alpha-N-acetylneuraminide alpha-2,8-sialyltransferase OS=Mus
           musculus GN=St8sia1 PE=1 SV=2
          Length = 355

 Score = 36.2 bits (82), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 25/120 (20%)

Query: 113 FGSFQLPNQSP-TQG---QKAIWKPKSYGTVSGQTSAEVGNLPADDTATAIKGNASEMTT 168
           F  ++LPN+    QG   Q+  W+       + QTSA +     +D        A    T
Sbjct: 45  FPVYRLPNEKEIVQGVLAQRTAWR-------TNQTSASLFRRQMEDCCDPAHLFA---MT 94

Query: 169 AQKSRMDLSKLFRGNLLENFTVDNSTYSLAEVRATFYPKFENEKSDQEIRMRMIEVVSNG 228
              S M  S  + G LL +FT+DNSTYSL      F           ++ ++   VV NG
Sbjct: 95  KMNSPMGKSLWYDGELLYSFTIDNSTYSLFPQATPF-----------QLPLKKCAVVGNG 143


>sp|Q01389|BCK1_YEAST Serine/threonine-protein kinase BCK1/SLK1/SSP31 OS=Saccharomyces
            cerevisiae (strain ATCC 204508 / S288c) GN=BCK1 PE=1 SV=1
          Length = 1478

 Score = 35.0 bits (79), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 220  RMIEVVSNGLAAVEVTLKHSGSLFMYAGHKGGAYAKNSFGNVYTAVGVFVLGRMLREAWG 279
            RM+EV  N + ++       G    +A  KG    K SFG VY  + V   G M+     
Sbjct: 1148 RMVEVTENHMVSINKAKNSKGEYKEFAWMKGEMIGKGSFGAVYLCLNV-TTGEMM----- 1201

Query: 280  AQALKKQVEFNDFLEKNRMCIS 301
                 KQVE   +  +N   +S
Sbjct: 1202 ---AVKQVEVPKYSSQNEAILS 1220


>sp|O32197|LIAR_BACSU Transcriptional regulatory protein LiaR OS=Bacillus subtilis (strain
            168) GN=liaR PE=2 SV=1
          Length = 211

 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 953  DHVRSVLEEGISWYKLHTSKHGRLESTKGSYAQEWAKWEKQMRETLFGNADYLQSIQVPF 1012
            D V  V+E G   Y L TSK   +     + ++   K E ++   +     +     +P 
Sbjct: 88   DKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPH 147

Query: 1013 ESAVKQVLEQLKLIAKGEYKAPSTEKRNFGTIVFAAVSLPVTEIQSLLVELAGKDPT 1069
            ES  K+ LE L LIA+G+        +  G  +F  +    T I ++L +L   D T
Sbjct: 148  ESLTKRELEILCLIAEGK------TNKEIGEELFITIKTVKTHITNILSKLDVSDRT 198


>sp|O04160|KSGT_BRANA Shaggy-related protein kinase theta OS=Brassica napus PE=2 SV=2
          Length = 468

 Score = 33.9 bits (76), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 79/206 (38%), Gaps = 23/206 (11%)

Query: 373 DALCEEGTATSVCKALDDVADIS-VPGSKDHIQVQGEILEGLVARIVSHECSQHMEEVLR 431
           D +  + +   V  + D VA  S VP   D +    E++  +  R+   E   +  E  +
Sbjct: 45  DPMQVDQSTDMVVVSQDTVAGTSNVPPPPDQLP---EVMNDM--RLREDEPHANRGEEDK 99

Query: 432 DYPPPPVEGAGLDLGPSLREICAANRSDEKQQIKALLQSVGSSFCPDHSDWFGVEAGGTH 491
           D  PP V G G + G  +           KQ I  + Q V        +  FGV      
Sbjct: 100 DMEPPIVNGCGTETGQVITTTVGGRDGKPKQTISYMAQRVVG------TGSFGVVFQAKC 153

Query: 492 SRNADRSVLTKFLHAHPADFSTTKLQEMIRLMRDKRFPAAFKIYHNFHKIDSVSNDNLFY 551
               ++  + K L      +   +LQ    +MR +  P   ++ H+F    +   D L+ 
Sbjct: 154 LETGEQVAIKKVLQD--KRYKNRELQ----IMRLQDHPNVVRLRHSF--FSTTDKDELYL 205

Query: 552 KMVIHVHSDSVFR---RYQKEMRHRP 574
            +V+    ++V+R    Y K  +H P
Sbjct: 206 NLVLEFVPETVYRALKHYTKMNQHMP 231


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.133    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,035,337
Number of Sequences: 539616
Number of extensions: 18255538
Number of successful extensions: 47249
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 47206
Number of HSP's gapped (non-prelim): 61
length of query: 1112
length of database: 191,569,459
effective HSP length: 128
effective length of query: 984
effective length of database: 122,498,611
effective search space: 120538633224
effective search space used: 120538633224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)