Query 046016
Match_columns 1112
No_of_seqs 24 out of 26
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 07:56:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08303 tRNA_lig_kinase: tRNA 97.6 0.00016 3.5E-09 73.9 7.5 130 781-924 2-151 (168)
2 PF09511 RNA_lig_T4_1: RNA lig 97.1 0.00065 1.4E-08 69.8 5.8 186 199-419 17-206 (221)
3 PF13671 AAA_33: AAA domain; P 97.0 0.00062 1.3E-08 62.5 4.1 109 779-899 1-123 (143)
4 PRK06762 hypothetical protein; 96.5 0.0073 1.6E-07 57.8 7.3 24 778-801 3-26 (166)
5 PRK12339 2-phosphoglycerate ki 96.3 0.0012 2.5E-08 67.6 0.2 89 776-871 2-104 (197)
6 PHA02530 pseT polynucleotide k 96.1 0.021 4.5E-07 59.7 8.2 24 778-801 3-26 (300)
7 smart00382 AAA ATPases associa 96.0 0.011 2.5E-07 50.6 5.0 46 777-824 2-47 (148)
8 TIGR03574 selen_PSTK L-seryl-t 95.8 0.0092 2E-07 61.5 4.1 45 779-825 1-47 (249)
9 PF00004 AAA: ATPase family as 95.8 0.0088 1.9E-07 53.5 3.3 123 780-943 1-132 (132)
10 PLN02200 adenylate kinase fami 95.7 0.022 4.8E-07 59.5 6.4 39 775-819 41-79 (234)
11 TIGR00041 DTMP_kinase thymidyl 95.6 0.0059 1.3E-07 59.6 1.9 31 776-806 2-32 (195)
12 PRK05541 adenylylsulfate kinas 95.5 0.0061 1.3E-07 59.2 1.4 42 775-818 5-46 (176)
13 cd02021 GntK Gluconate kinase 95.5 0.027 5.9E-07 53.0 5.7 25 779-803 1-25 (150)
14 PRK08118 topology modulation p 95.4 0.084 1.8E-06 52.4 9.1 63 884-947 89-157 (167)
15 PRK14527 adenylate kinase; Pro 95.3 0.094 2E-06 52.1 9.1 38 776-819 5-42 (191)
16 PF13207 AAA_17: AAA domain; P 95.3 0.01 2.3E-07 53.4 2.2 40 779-824 1-40 (121)
17 TIGR01359 UMP_CMP_kin_fam UMP- 95.3 0.0089 1.9E-07 57.8 1.8 36 779-820 1-36 (183)
18 cd04170 EF-G_bact Elongation f 95.1 0.58 1.2E-05 49.0 14.4 211 781-1025 3-237 (268)
19 PRK00889 adenylylsulfate kinas 95.1 0.042 9.2E-07 53.4 5.7 43 774-818 1-43 (175)
20 TIGR01360 aden_kin_iso1 adenyl 94.9 0.017 3.7E-07 55.5 2.4 35 778-818 4-38 (188)
21 PRK13975 thymidylate kinase; P 94.8 0.012 2.6E-07 57.5 1.2 27 777-803 2-28 (196)
22 PF08302 tRNA_lig_CPD: Fungal 94.8 0.077 1.7E-06 57.1 7.2 118 923-1097 5-128 (257)
23 PF01583 APS_kinase: Adenylyls 94.6 0.011 2.4E-07 59.6 0.5 48 776-825 1-48 (156)
24 PRK00279 adk adenylate kinase; 94.5 0.12 2.5E-06 52.4 7.4 35 779-819 2-36 (215)
25 cd00227 CPT Chloramphenicol (C 94.5 0.079 1.7E-06 51.9 6.0 27 776-802 1-27 (175)
26 TIGR01663 PNK-3'Pase polynucle 94.4 0.17 3.7E-06 59.5 9.6 139 775-944 367-508 (526)
27 TIGR00235 udk uridine kinase. 94.4 0.035 7.5E-07 55.9 3.4 30 773-802 2-31 (207)
28 PRK03839 putative kinase; Prov 94.4 0.024 5.2E-07 55.3 2.2 24 779-802 2-25 (180)
29 PF13238 AAA_18: AAA domain; P 94.2 0.026 5.6E-07 50.4 1.9 22 780-801 1-22 (129)
30 PRK00131 aroK shikimate kinase 93.9 0.038 8.3E-07 52.1 2.6 27 775-801 2-28 (175)
31 PRK00698 tmk thymidylate kinas 93.9 0.035 7.6E-07 54.2 2.3 30 776-805 2-31 (205)
32 PRK14530 adenylate kinase; Pro 93.9 0.031 6.7E-07 56.5 2.0 38 777-820 3-40 (215)
33 PRK14531 adenylate kinase; Pro 93.7 0.034 7.4E-07 55.1 1.8 35 779-819 4-38 (183)
34 PRK08233 hypothetical protein; 93.7 0.055 1.2E-06 51.8 3.1 26 777-802 3-28 (182)
35 PRK00625 shikimate kinase; Pro 93.7 0.04 8.7E-07 55.5 2.3 24 779-802 2-25 (173)
36 PRK04040 adenylate kinase; Pro 93.5 0.051 1.1E-06 55.1 2.7 25 777-801 2-26 (188)
37 PRK14532 adenylate kinase; Pro 93.5 0.043 9.4E-07 53.8 2.1 37 779-821 2-38 (188)
38 cd00009 AAA The AAA+ (ATPases 93.3 0.13 2.8E-06 45.1 4.6 27 776-802 18-44 (151)
39 PRK05480 uridine/cytidine kina 93.2 0.084 1.8E-06 52.8 3.7 27 775-801 4-30 (209)
40 TIGR00455 apsK adenylylsulfate 93.2 0.053 1.1E-06 53.3 2.2 80 774-871 15-97 (184)
41 PRK08356 hypothetical protein; 93.2 0.092 2E-06 52.5 3.9 37 776-819 4-40 (195)
42 cd01672 TMPK Thymidine monopho 93.0 0.061 1.3E-06 51.5 2.3 24 778-801 1-24 (200)
43 cd02027 APSK Adenosine 5'-phos 92.9 0.14 3.1E-06 49.6 4.7 39 779-819 1-39 (149)
44 PRK00300 gmk guanylate kinase; 92.8 0.09 2E-06 52.0 3.3 31 774-804 2-32 (205)
45 cd01428 ADK Adenylate kinase ( 92.8 0.14 3E-06 49.7 4.3 35 780-820 2-36 (194)
46 PRK14528 adenylate kinase; Pro 92.6 0.48 1E-05 47.6 8.0 34 780-819 4-37 (186)
47 COG3596 Predicted GTPase [Gene 92.4 0.3 6.6E-06 54.3 6.8 111 775-893 37-222 (296)
48 cd02020 CMPK Cytidine monophos 92.3 0.075 1.6E-06 48.9 1.9 23 779-801 1-23 (147)
49 PRK13973 thymidylate kinase; P 92.3 0.093 2E-06 53.5 2.7 25 777-801 3-27 (213)
50 PRK03846 adenylylsulfate kinas 92.3 0.098 2.1E-06 52.5 2.8 43 775-819 22-64 (198)
51 KOG3347 Predicted nucleotide k 92.2 0.062 1.3E-06 55.6 1.3 66 781-860 11-76 (176)
52 PRK04182 cytidylate kinase; Pr 91.8 0.11 2.5E-06 49.5 2.5 25 778-802 1-25 (180)
53 PLN02924 thymidylate kinase 91.8 0.1 2.2E-06 54.4 2.4 31 775-805 14-44 (220)
54 PLN02842 nucleotide kinase 91.8 0.37 8.1E-06 56.7 7.0 32 782-819 2-33 (505)
55 PRK13808 adenylate kinase; Pro 91.8 0.83 1.8E-05 51.4 9.4 35 780-820 3-37 (333)
56 cd01673 dNK Deoxyribonucleosid 91.3 0.11 2.4E-06 51.0 1.9 22 780-801 2-23 (193)
57 PRK05439 pantothenate kinase; 91.2 0.42 9E-06 53.1 6.3 38 777-814 86-123 (311)
58 PLN00020 ribulose bisphosphate 91.1 1.4 3.1E-05 51.0 10.4 37 779-819 150-186 (413)
59 PRK14738 gmk guanylate kinase; 91.1 0.22 4.8E-06 50.7 3.8 28 773-800 9-36 (206)
60 PRK13974 thymidylate kinase; P 91.0 0.18 4E-06 51.4 3.2 27 776-802 2-28 (212)
61 cd02028 UMPK_like Uridine mono 90.9 0.12 2.6E-06 51.8 1.7 25 779-803 1-25 (179)
62 PF00910 RNA_helicase: RNA hel 90.8 0.11 2.4E-06 47.8 1.3 75 780-861 1-81 (107)
63 TIGR03575 selen_PSTK_euk L-ser 90.7 0.14 2.9E-06 57.4 2.1 37 779-817 1-38 (340)
64 PRK03731 aroL shikimate kinase 90.7 0.15 3.3E-06 49.2 2.1 24 779-802 4-27 (171)
65 TIGR01313 therm_gnt_kin carboh 90.7 0.17 3.7E-06 48.5 2.4 34 781-821 2-35 (163)
66 PRK07667 uridine kinase; Provi 90.5 0.21 4.6E-06 50.3 3.1 40 776-817 16-55 (193)
67 PRK13947 shikimate kinase; Pro 90.2 0.18 3.9E-06 48.4 2.2 22 780-801 4-25 (171)
68 PF13401 AAA_22: AAA domain; P 90.1 0.17 3.7E-06 45.9 1.8 23 777-799 4-26 (131)
69 PF05729 NACHT: NACHT domain 90.1 0.21 4.5E-06 46.2 2.4 24 779-802 2-25 (166)
70 cd02019 NK Nucleoside/nucleoti 90.0 0.4 8.7E-06 41.3 3.9 22 780-801 2-23 (69)
71 PRK14526 adenylate kinase; Pro 89.8 0.18 3.8E-06 52.5 1.9 34 780-819 3-36 (211)
72 cd00464 SK Shikimate kinase (S 89.6 0.21 4.6E-06 46.6 2.1 22 780-801 2-23 (154)
73 PF01443 Viral_helicase1: Vira 89.5 0.19 4E-06 50.1 1.7 19 783-801 4-22 (234)
74 TIGR00554 panK_bact pantothena 89.3 0.76 1.6E-05 50.5 6.3 24 778-801 63-86 (290)
75 PRK14737 gmk guanylate kinase; 89.3 0.4 8.7E-06 48.7 3.9 32 774-805 1-32 (186)
76 PF06414 Zeta_toxin: Zeta toxi 89.2 0.31 6.7E-06 49.0 3.1 42 775-820 13-54 (199)
77 TIGR03263 guanyl_kin guanylate 89.2 0.33 7.2E-06 47.0 3.2 28 777-804 1-28 (180)
78 TIGR02322 phosphon_PhnN phosph 89.0 0.34 7.3E-06 47.2 3.1 28 777-804 1-28 (179)
79 TIGR02173 cyt_kin_arch cytidyl 89.0 0.28 6.1E-06 46.6 2.5 24 778-801 1-24 (171)
80 PRK09563 rbgA GTPase YlqF; Rev 89.0 3.9 8.4E-05 44.1 11.2 124 775-939 119-250 (287)
81 PLN02459 probable adenylate ki 88.9 0.24 5.2E-06 53.9 2.2 40 775-820 27-66 (261)
82 PRK01184 hypothetical protein; 88.9 0.28 6E-06 48.1 2.4 36 778-820 2-37 (184)
83 PRK06696 uridine kinase; Valid 88.8 0.26 5.5E-06 50.5 2.2 43 775-819 20-63 (223)
84 TIGR01526 nadR_NMN_Atrans nico 88.8 1.8 3.9E-05 47.8 8.7 117 777-896 162-310 (325)
85 cd02023 UMPK Uridine monophosp 88.6 0.31 6.8E-06 48.4 2.5 23 779-801 1-23 (198)
86 cd00876 Ras Ras family. The R 88.5 0.55 1.2E-05 43.0 3.9 99 780-895 2-100 (160)
87 PF07728 AAA_5: AAA domain (dy 88.5 0.25 5.5E-06 46.0 1.8 121 780-935 2-139 (139)
88 PRK02496 adk adenylate kinase; 88.4 0.28 6.2E-06 48.1 2.2 33 780-818 4-36 (184)
89 PRK07261 topology modulation p 88.4 0.3 6.4E-06 48.6 2.3 21 780-800 3-23 (171)
90 PRK09435 membrane ATPase/prote 88.3 0.32 7E-06 54.2 2.7 41 775-817 54-94 (332)
91 PRK05537 bifunctional sulfate 88.3 0.34 7.4E-06 57.2 3.1 44 775-819 390-433 (568)
92 COG0529 CysC Adenylylsulfate k 88.2 0.31 6.6E-06 51.6 2.3 45 773-819 19-63 (197)
93 TIGR01351 adk adenylate kinase 88.2 0.26 5.6E-06 49.8 1.7 34 780-819 2-35 (210)
94 PF13481 AAA_25: AAA domain; P 88.1 0.49 1.1E-05 46.1 3.6 65 776-859 31-95 (193)
95 TIGR01618 phage_P_loop phage n 88.0 1.1 2.4E-05 47.6 6.3 107 774-897 10-131 (220)
96 PF12846 AAA_10: AAA-like doma 87.9 1.7 3.7E-05 44.1 7.3 25 780-804 4-28 (304)
97 TIGR03015 pepcterm_ATPase puta 87.9 2.8 6.1E-05 43.0 8.9 28 773-801 40-67 (269)
98 KOG4622 Predicted nucleotide k 87.9 0.29 6.3E-06 52.8 1.9 127 779-922 3-164 (291)
99 PRK06217 hypothetical protein; 87.9 0.39 8.5E-06 47.6 2.7 23 779-801 3-25 (183)
100 cd02024 NRK1 Nicotinamide ribo 87.8 0.33 7.2E-06 50.0 2.3 23 780-802 2-24 (187)
101 CHL00195 ycf46 Ycf46; Provisio 87.5 0.59 1.3E-05 54.6 4.3 32 775-813 259-290 (489)
102 PHA02575 1 deoxynucleoside mon 87.5 0.34 7.3E-06 52.2 2.2 36 778-819 1-36 (227)
103 PF08433 KTI12: Chromatin asso 87.4 0.35 7.7E-06 52.3 2.3 103 779-897 3-122 (270)
104 PRK10078 ribose 1,5-bisphospho 87.3 0.43 9.4E-06 47.4 2.7 24 777-800 2-25 (186)
105 PRK09825 idnK D-gluconate kina 86.7 0.49 1.1E-05 47.6 2.7 36 776-818 2-37 (176)
106 cd01394 radB RadB. The archaea 86.7 0.64 1.4E-05 46.8 3.5 52 776-829 18-69 (218)
107 TIGR01243 CDC48 AAA family ATP 86.5 0.98 2.1E-05 54.3 5.5 60 775-841 487-553 (733)
108 PLN03046 D-glycerate 3-kinase; 86.5 1.3 2.9E-05 51.9 6.3 38 667-708 138-175 (460)
109 PRK13949 shikimate kinase; Pro 86.1 0.48 1.1E-05 47.2 2.3 23 780-802 4-26 (169)
110 cd02025 PanK Pantothenate kina 86.0 0.5 1.1E-05 49.1 2.5 23 779-801 1-23 (220)
111 PRK13948 shikimate kinase; Pro 85.8 0.56 1.2E-05 48.0 2.6 27 776-802 9-35 (182)
112 PTZ00454 26S protease regulato 85.8 0.98 2.1E-05 51.4 4.8 24 776-801 180-203 (398)
113 PF01926 MMR_HSR1: 50S ribosom 85.7 0.49 1.1E-05 42.9 1.9 21 780-800 2-22 (116)
114 cd03114 ArgK-like The function 85.7 0.89 1.9E-05 44.7 3.8 21 780-800 2-22 (148)
115 PRK06761 hypothetical protein; 85.7 0.6 1.3E-05 51.2 2.9 29 777-805 3-31 (282)
116 PRK05057 aroK shikimate kinase 85.7 0.53 1.2E-05 46.9 2.3 23 779-801 6-28 (172)
117 cd00878 Arf_Arl Arf (ADP-ribos 85.6 2.4 5.3E-05 39.5 6.5 22 780-801 2-23 (158)
118 PF13191 AAA_16: AAA ATPase do 85.5 0.6 1.3E-05 44.4 2.5 28 773-800 20-47 (185)
119 TIGR00150 HI0065_YjeE ATPase, 85.4 0.62 1.3E-05 46.2 2.6 28 775-802 20-47 (133)
120 cd01120 RecA-like_NTPases RecA 85.4 0.51 1.1E-05 43.0 1.9 22 780-801 2-23 (165)
121 cd00881 GTP_translation_factor 85.4 2 4.4E-05 40.5 5.9 27 780-806 2-28 (189)
122 PF00406 ADK: Adenylate kinase 85.3 0.24 5.3E-06 47.2 -0.2 51 784-861 3-53 (151)
123 cd01894 EngA1 EngA1 subfamily. 85.3 1.7 3.8E-05 39.6 5.3 19 782-800 2-20 (157)
124 cd04163 Era Era subfamily. Er 85.3 0.76 1.7E-05 41.5 2.9 23 778-800 4-26 (168)
125 PRK05506 bifunctional sulfate 85.2 0.49 1.1E-05 55.9 2.2 43 776-820 459-501 (632)
126 cd04160 Arfrp1 Arfrp1 subfamil 85.2 2.3 5.1E-05 39.8 6.2 21 780-800 2-22 (167)
127 PRK11545 gntK gluconate kinase 84.8 0.51 1.1E-05 46.6 1.8 28 784-818 2-29 (163)
128 PRK13946 shikimate kinase; Pro 84.8 0.64 1.4E-05 46.4 2.5 25 778-802 11-35 (184)
129 PLN02674 adenylate kinase 84.8 0.47 1E-05 51.0 1.6 36 778-819 32-67 (244)
130 cd04168 TetM_like Tet(M)-like 84.5 2.4 5.3E-05 44.6 6.6 126 781-937 3-146 (237)
131 TIGR00763 lon ATP-dependent pr 84.5 1.4 3E-05 53.7 5.4 26 777-802 347-372 (775)
132 PRK10787 DNA-binding ATP-depen 84.4 1.1 2.5E-05 54.9 4.8 26 775-800 347-372 (784)
133 cd01882 BMS1 Bms1. Bms1 is an 84.3 3.8 8.3E-05 42.5 7.9 26 775-800 37-62 (225)
134 PRK06547 hypothetical protein; 84.2 0.83 1.8E-05 46.2 2.9 30 772-801 10-39 (172)
135 KOG0739 AAA+-type ATPase [Post 83.5 3.9 8.5E-05 46.8 8.0 123 777-943 168-298 (439)
136 PF00485 PRK: Phosphoribulokin 83.5 0.66 1.4E-05 46.4 1.9 27 779-805 1-27 (194)
137 PRK10463 hydrogenase nickel in 83.5 1 2.3E-05 49.8 3.6 43 773-818 100-142 (290)
138 PRK08154 anaerobic benzoate ca 83.4 0.81 1.8E-05 49.8 2.7 27 775-801 131-157 (309)
139 PTZ00088 adenylate kinase 1; P 83.4 0.64 1.4E-05 49.1 1.9 36 778-819 7-42 (229)
140 TIGR03689 pup_AAA proteasome A 83.2 1.6 3.5E-05 51.6 5.2 25 776-802 217-241 (512)
141 PRK03992 proteasome-activating 83.2 1.5 3.3E-05 49.2 4.7 25 776-802 166-190 (389)
142 cd01918 HprK_C HprK/P, the bif 83.2 0.93 2E-05 45.9 2.8 40 776-815 13-53 (149)
143 TIGR01242 26Sp45 26S proteasom 83.2 1.3 2.9E-05 48.6 4.2 24 776-801 157-180 (364)
144 TIGR00436 era GTP-binding prot 83.2 1.4 3E-05 46.6 4.2 21 781-801 4-24 (270)
145 cd03115 SRP The signal recogni 83.1 2.1 4.7E-05 41.6 5.2 40 779-820 2-41 (173)
146 PLN02165 adenylate isopentenyl 82.9 1.3 2.9E-05 49.9 4.2 33 771-803 37-69 (334)
147 cd01858 NGP_1 NGP-1. Autoanti 82.8 0.94 2E-05 43.6 2.6 23 777-799 102-124 (157)
148 cd03244 ABCC_MRP_domain2 Domai 82.8 1.6 3.5E-05 43.9 4.3 24 775-798 28-51 (221)
149 PRK06793 fliI flagellum-specif 82.8 2.1 4.6E-05 49.7 5.8 159 776-965 155-331 (432)
150 TIGR00073 hypB hydrogenase acc 82.7 1.2 2.6E-05 45.2 3.4 45 771-818 16-60 (207)
151 COG4615 PvdE ABC-type sideroph 82.7 0.79 1.7E-05 53.6 2.4 24 775-798 347-370 (546)
152 PRK09270 nucleoside triphospha 82.7 1 2.2E-05 46.4 3.0 29 775-803 31-59 (229)
153 PF00005 ABC_tran: ABC transpo 82.6 0.77 1.7E-05 42.4 1.9 23 775-797 9-31 (137)
154 TIGR00064 ftsY signal recognit 82.6 4.2 9.2E-05 44.0 7.6 22 776-797 71-92 (272)
155 cd00154 Rab Rab family. Rab G 82.6 0.9 2E-05 40.8 2.3 100 780-895 3-102 (159)
156 cd00882 Ras_like_GTPase Ras-li 82.2 0.92 2E-05 39.1 2.1 20 783-802 2-21 (157)
157 cd04119 RJL RJL (RabJ-Like) su 82.0 0.96 2.1E-05 41.7 2.2 20 780-799 3-22 (168)
158 PRK14974 cell division protein 82.0 5.5 0.00012 44.9 8.4 160 775-961 138-304 (336)
159 COG0237 CoaE Dephospho-CoA kin 81.5 1.3 2.8E-05 46.4 3.2 25 778-804 3-27 (201)
160 TIGR00750 lao LAO/AO transport 81.5 1.1 2.3E-05 48.5 2.7 26 775-800 32-57 (300)
161 PF05496 RuvB_N: Holliday junc 81.4 2.5 5.5E-05 45.9 5.4 57 780-844 53-111 (233)
162 PLN02796 D-glycerate 3-kinase 81.0 3.6 7.8E-05 46.9 6.6 32 667-701 26-57 (347)
163 PF03266 NTPase_1: NTPase; In 80.9 1 2.2E-05 45.4 2.2 22 780-801 2-23 (168)
164 COG1936 Predicted nucleotide k 80.9 0.97 2.1E-05 47.5 2.0 146 779-961 2-156 (180)
165 cd02022 DPCK Dephospho-coenzym 80.8 1.1 2.3E-05 44.7 2.2 21 779-799 1-21 (179)
166 PRK13721 conjugal transfer ATP 80.7 3 6.6E-05 51.3 6.4 22 780-801 452-473 (844)
167 cd00820 PEPCK_HprK Phosphoenol 80.7 1.3 2.8E-05 42.7 2.7 24 775-798 13-36 (107)
168 PRK13976 thymidylate kinase; P 80.6 1.1 2.4E-05 46.6 2.3 24 779-802 2-25 (209)
169 PRK14529 adenylate kinase; Pro 80.4 1 2.2E-05 47.8 2.1 34 780-819 3-36 (223)
170 COG1703 ArgK Putative periplas 80.2 0.94 2E-05 51.0 1.8 44 776-819 50-104 (323)
171 cd00157 Rho Rho (Ras homology) 80.1 1.2 2.6E-05 41.6 2.2 21 780-800 3-23 (171)
172 PRK00771 signal recognition pa 80.0 4.6 9.9E-05 46.9 7.2 41 777-819 95-135 (437)
173 cd01895 EngA2 EngA2 subfamily. 79.8 1.5 3.2E-05 40.3 2.7 23 780-802 5-27 (174)
174 TIGR01425 SRP54_euk signal rec 79.7 4.5 9.8E-05 47.1 7.0 52 778-831 101-154 (429)
175 COG0563 Adk Adenylate kinase a 79.6 0.57 1.2E-05 47.8 -0.1 72 780-859 3-74 (178)
176 cd00071 GMPK Guanosine monopho 79.6 1.3 2.8E-05 42.8 2.3 27 779-805 1-28 (137)
177 PRK15453 phosphoribulokinase; 79.6 1.4 3.1E-05 48.9 3.0 42 776-819 4-45 (290)
178 PF03308 ArgK: ArgK protein; 79.6 0.83 1.8E-05 50.3 1.1 45 775-819 27-82 (266)
179 cd04164 trmE TrmE (MnmE, ThdF, 79.4 1.6 3.5E-05 39.6 2.8 25 777-801 1-25 (157)
180 cd03264 ABC_drug_resistance_li 79.4 1.3 2.7E-05 44.5 2.3 22 776-798 25-46 (211)
181 smart00178 SAR Sar1p-like memb 79.4 5.8 0.00013 39.1 6.8 22 778-799 18-39 (184)
182 COG0464 SpoVK ATPases of the A 79.1 2.1 4.5E-05 48.9 4.1 55 780-839 279-341 (494)
183 cd04138 H_N_K_Ras_like H-Ras/N 78.9 1.4 3.1E-05 40.4 2.2 20 780-799 4-23 (162)
184 smart00072 GuKc Guanylate kina 78.8 1.6 3.4E-05 43.5 2.7 30 777-806 2-32 (184)
185 cd04159 Arl10_like Arl10-like 78.6 1.3 2.8E-05 39.9 1.9 20 780-799 2-21 (159)
186 PRK05800 cobU adenosylcobinami 78.6 4.7 0.0001 40.8 6.0 72 777-855 1-72 (170)
187 PRK07933 thymidylate kinase; V 78.6 1.4 3.1E-05 45.5 2.4 28 778-805 1-28 (213)
188 smart00175 RAB Rab subfamily o 78.5 1.5 3.3E-05 40.5 2.4 21 780-800 3-23 (164)
189 PRK14731 coaE dephospho-CoA ki 78.4 1.6 3.5E-05 44.7 2.7 22 778-799 6-27 (208)
190 cd03251 ABCC_MsbA MsbA is an e 78.2 2.4 5.2E-05 43.1 3.8 23 775-797 26-48 (234)
191 PF02223 Thymidylate_kin: Thym 78.2 0.67 1.4E-05 45.5 -0.1 24 782-805 1-24 (186)
192 PTZ00301 uridine kinase; Provi 78.2 1.6 3.5E-05 45.7 2.7 22 778-799 4-25 (210)
193 cd02038 FleN-like FleN is a me 78.2 6.2 0.00013 37.9 6.4 91 779-893 2-92 (139)
194 cd01862 Rab7 Rab7 subfamily. 77.9 1.6 3.4E-05 40.9 2.3 21 780-800 3-23 (172)
195 TIGR02881 spore_V_K stage V sp 77.9 2.2 4.7E-05 44.9 3.6 22 778-799 43-64 (261)
196 PRK13640 cbiO cobalt transport 77.9 2.3 4.9E-05 45.3 3.7 24 775-798 31-54 (282)
197 cd03260 ABC_PstB_phosphate_tra 77.8 1.7 3.6E-05 44.1 2.6 24 775-798 24-47 (227)
198 cd04136 Rap_like Rap-like subf 77.8 1.6 3.4E-05 40.5 2.3 19 780-798 4-22 (163)
199 PF13521 AAA_28: AAA domain; P 77.7 1.4 3E-05 42.6 1.9 21 780-800 2-22 (163)
200 smart00763 AAA_PrkA PrkA AAA d 77.5 1.5 3.3E-05 50.0 2.4 28 776-803 77-104 (361)
201 PF00931 NB-ARC: NB-ARC domain 77.1 1.8 3.9E-05 44.6 2.6 26 775-800 17-42 (287)
202 PF03029 ATP_bind_1: Conserved 76.9 1.3 2.8E-05 47.0 1.5 22 783-804 2-23 (238)
203 cd01876 YihA_EngB The YihA (En 76.8 1.6 3.6E-05 39.6 2.0 20 780-799 2-21 (170)
204 PRK13768 GTPase; Provisional 76.7 1.8 3.9E-05 45.9 2.6 38 778-817 3-40 (253)
205 cd01861 Rab6 Rab6 subfamily. 76.6 1.8 3.8E-05 40.2 2.2 20 780-799 3-22 (161)
206 cd01123 Rad51_DMC1_radA Rad51_ 76.5 2 4.3E-05 43.4 2.7 23 776-798 18-40 (235)
207 COG2019 AdkA Archaeal adenylat 76.3 2 4.4E-05 45.5 2.7 23 778-800 5-27 (189)
208 PRK13891 conjugal transfer pro 76.3 4.3 9.3E-05 50.3 5.9 73 781-881 492-564 (852)
209 cd03301 ABC_MalK_N The N-termi 76.2 2 4.3E-05 43.0 2.6 24 775-798 24-47 (213)
210 cd04123 Rab21 Rab21 subfamily. 76.2 1.9 4.1E-05 39.6 2.2 21 780-800 3-23 (162)
211 cd03255 ABC_MJ0796_Lo1CDE_FtsE 76.1 2 4.3E-05 43.2 2.6 24 775-798 28-51 (218)
212 cd01852 AIG1 AIG1 (avrRpt2-ind 75.8 1.7 3.7E-05 43.3 2.0 21 780-800 3-23 (196)
213 CHL00181 cbbX CbbX; Provisiona 75.8 2.4 5.1E-05 46.1 3.2 25 775-799 57-81 (287)
214 TIGR02237 recomb_radB DNA repa 75.8 2.2 4.9E-05 42.6 2.8 25 776-800 11-35 (209)
215 cd03219 ABC_Mj1267_LivG_branch 75.7 2 4.4E-05 43.6 2.6 23 775-797 24-46 (236)
216 cd01855 YqeH YqeH. YqeH is an 75.4 1.9 4.1E-05 42.6 2.2 22 779-800 129-150 (190)
217 cd03257 ABC_NikE_OppD_transpor 75.4 2 4.4E-05 43.2 2.4 24 775-798 29-52 (228)
218 PRK14021 bifunctional shikimat 75.3 1.7 3.7E-05 51.1 2.1 23 779-801 8-30 (542)
219 PRK00080 ruvB Holliday junctio 75.3 1.8 3.8E-05 47.0 2.1 23 780-802 54-76 (328)
220 cd01866 Rab2 Rab2 subfamily. 75.3 2 4.3E-05 41.1 2.2 21 779-799 6-26 (168)
221 cd03223 ABCD_peroxisomal_ALDP 75.2 2.2 4.7E-05 42.0 2.5 24 775-798 25-48 (166)
222 TIGR00635 ruvB Holliday juncti 75.1 1.9 4E-05 45.5 2.2 22 780-801 33-54 (305)
223 cd04137 RheB Rheb (Ras Homolog 74.5 2.1 4.6E-05 40.9 2.2 20 780-799 4-23 (180)
224 TIGR00231 small_GTP small GTP- 74.4 2.2 4.9E-05 37.7 2.2 22 780-801 4-25 (161)
225 PRK12337 2-phosphoglycerate ki 74.4 1.7 3.8E-05 51.1 1.9 47 777-829 255-301 (475)
226 cd04113 Rab4 Rab4 subfamily. 74.4 2.2 4.7E-05 39.9 2.2 21 780-800 3-23 (161)
227 COG0703 AroK Shikimate kinase 74.3 2 4.4E-05 44.7 2.1 22 780-801 5-26 (172)
228 TIGR01166 cbiO cobalt transpor 74.3 2.4 5.2E-05 42.0 2.6 24 775-798 16-39 (190)
229 cd03247 ABCC_cytochrome_bd The 74.3 2.4 5.1E-05 41.8 2.5 24 775-798 26-49 (178)
230 PRK06995 flhF flagellar biosyn 74.3 7.3 0.00016 46.0 6.9 23 776-798 255-277 (484)
231 cd03369 ABCC_NFT1 Domain 2 of 74.1 4.8 0.0001 40.4 4.7 24 775-798 32-55 (207)
232 cd03250 ABCC_MRP_domain1 Domai 74.0 2.4 5.2E-05 42.4 2.5 24 775-798 29-52 (204)
233 PRK13695 putative NTPase; Prov 73.9 2.3 5E-05 41.7 2.3 34 925-959 139-172 (174)
234 cd03271 ABC_UvrA_II The excisi 73.8 2.2 4.8E-05 46.1 2.4 25 774-798 18-42 (261)
235 COG4608 AppF ABC-type oligopep 73.8 2.1 4.6E-05 47.2 2.3 28 775-802 37-64 (268)
236 PF13173 AAA_14: AAA domain 73.8 2.5 5.4E-05 39.7 2.4 78 778-860 3-87 (128)
237 cd04114 Rab30 Rab30 subfamily. 73.7 2.3 5E-05 39.9 2.2 22 778-799 8-29 (169)
238 cd03261 ABC_Org_Solvent_Resist 73.7 2.4 5.2E-05 43.3 2.5 24 775-798 24-47 (235)
239 cd03262 ABC_HisP_GlnQ_permease 73.6 2.4 5.3E-05 42.3 2.5 24 775-798 24-47 (213)
240 PRK13543 cytochrome c biogenes 73.6 2.4 5.1E-05 43.1 2.4 24 775-798 35-58 (214)
241 cd04124 RabL2 RabL2 subfamily. 73.6 2.3 5E-05 40.4 2.2 20 780-799 3-22 (161)
242 cd04116 Rab9 Rab9 subfamily. 73.6 2.8 6.1E-05 39.7 2.8 22 778-799 6-27 (170)
243 PRK10416 signal recognition pa 73.5 7.4 0.00016 43.3 6.3 43 775-819 112-154 (318)
244 PLN02199 shikimate kinase 73.4 2.4 5.1E-05 47.6 2.5 29 773-801 98-126 (303)
245 TIGR02673 FtsE cell division A 73.3 2.5 5.5E-05 42.3 2.5 24 775-798 26-49 (214)
246 cd04178 Nucleostemin_like Nucl 73.1 2.6 5.6E-05 42.6 2.6 24 777-800 117-140 (172)
247 PRK00089 era GTPase Era; Revie 73.1 2.8 6.1E-05 44.3 2.9 25 779-803 7-31 (292)
248 TIGR00152 dephospho-CoA kinase 73.1 2.2 4.7E-05 42.5 2.0 25 779-804 1-25 (188)
249 cd03265 ABC_DrrA DrrA is the A 73.1 2.6 5.5E-05 42.7 2.5 24 775-798 24-47 (220)
250 PTZ00361 26 proteosome regulat 73.0 4.6 0.0001 46.9 4.8 25 775-801 217-241 (438)
251 PLN02348 phosphoribulokinase 73.0 3.2 7E-05 47.9 3.6 30 775-804 47-76 (395)
252 TIGR02639 ClpA ATP-dependent C 72.9 3.8 8.3E-05 49.6 4.3 60 782-841 208-281 (731)
253 cd03249 ABC_MTABC3_MDL1_MDL2 M 72.9 4 8.7E-05 41.7 3.9 24 775-798 27-50 (238)
254 PRK14255 phosphate ABC transpo 72.8 2.5 5.5E-05 43.6 2.4 24 775-798 29-52 (252)
255 COG4088 Predicted nucleotide k 72.8 1.5 3.3E-05 47.9 0.9 40 779-820 3-42 (261)
256 PRK14240 phosphate transporter 72.8 2.6 5.5E-05 43.5 2.5 24 775-798 27-50 (250)
257 cd03296 ABC_CysA_sulfate_impor 72.7 2.7 5.8E-05 43.2 2.6 24 775-798 26-49 (239)
258 PHA00729 NTP-binding motif con 72.7 2.4 5.1E-05 45.7 2.3 25 778-802 18-42 (226)
259 cd01898 Obg Obg subfamily. Th 72.7 3 6.5E-05 39.1 2.7 21 780-800 3-23 (170)
260 TIGR00960 3a0501s02 Type II (G 72.7 2.7 5.8E-05 42.4 2.5 24 775-798 27-50 (216)
261 cd01125 repA Hexameric Replica 72.6 4.9 0.00011 41.6 4.5 66 777-859 1-66 (239)
262 PF00071 Ras: Ras family; Int 72.5 2.3 5E-05 39.6 1.9 101 780-896 2-102 (162)
263 TIGR01978 sufC FeS assembly AT 72.5 2.7 5.8E-05 42.8 2.5 24 775-798 24-47 (243)
264 PF05970 PIF1: PIF1-like helic 72.4 2.2 4.8E-05 47.4 2.0 27 773-799 18-44 (364)
265 PF03205 MobB: Molybdopterin g 72.3 2.5 5.4E-05 41.5 2.2 23 779-801 2-24 (140)
266 cd02042 ParA ParA and ParB of 72.3 5.5 0.00012 35.6 4.2 72 779-871 2-73 (104)
267 PF03193 DUF258: Protein of un 72.3 2.8 6.2E-05 42.9 2.6 23 778-800 36-58 (161)
268 PRK11701 phnK phosphonate C-P 72.3 2.6 5.6E-05 43.9 2.4 24 775-798 30-53 (258)
269 cd04157 Arl6 Arl6 subfamily. 72.3 2.4 5.1E-05 39.3 1.9 20 780-799 2-21 (162)
270 cd03298 ABC_ThiQ_thiamine_tran 72.2 2.8 6.1E-05 42.0 2.6 24 775-798 22-45 (211)
271 PRK14256 phosphate ABC transpo 72.0 2.7 5.9E-05 43.5 2.4 24 775-798 28-51 (252)
272 cd03269 ABC_putative_ATPase Th 71.9 2.9 6.2E-05 42.0 2.5 24 775-798 24-47 (210)
273 PRK14730 coaE dephospho-CoA ki 71.8 2.8 6E-05 43.0 2.4 23 779-801 3-25 (195)
274 TIGR00972 3a0107s01c2 phosphat 71.8 2.9 6.2E-05 43.2 2.6 24 775-798 25-48 (247)
275 cd03236 ABC_RNaseL_inhibitor_d 71.8 2.8 6.2E-05 44.5 2.6 23 775-797 24-46 (255)
276 PRK14247 phosphate ABC transpo 71.8 2.8 6E-05 43.2 2.5 24 775-798 27-50 (250)
277 PRK14267 phosphate ABC transpo 71.8 2.8 6.1E-05 43.3 2.5 24 775-798 28-51 (253)
278 TIGR03005 ectoine_ehuA ectoine 71.8 2.8 6.1E-05 43.4 2.5 24 775-798 24-47 (252)
279 cd03292 ABC_FtsE_transporter F 71.7 2.8 6.1E-05 41.9 2.4 23 775-797 25-47 (214)
280 TIGR02323 CP_lyasePhnK phospho 71.7 2.7 6E-05 43.3 2.4 24 775-798 27-50 (253)
281 TIGR03411 urea_trans_UrtD urea 71.7 2.9 6.3E-05 42.8 2.6 24 775-798 26-49 (242)
282 CHL00131 ycf16 sulfate ABC tra 71.6 2.8 6.1E-05 43.1 2.5 24 775-798 31-54 (252)
283 PRK10771 thiQ thiamine transpo 71.6 2.8 6.2E-05 42.8 2.5 23 775-797 23-45 (232)
284 cd03225 ABC_cobalt_CbiO_domain 71.5 3.1 6.8E-05 41.6 2.7 24 775-798 25-48 (211)
285 cd02030 NDUO42 NADH:Ubiquinone 71.5 2.4 5.2E-05 43.6 2.0 22 780-801 2-23 (219)
286 cd01878 HflX HflX subfamily. 71.5 3 6.4E-05 41.2 2.5 24 778-801 42-65 (204)
287 PRK14734 coaE dephospho-CoA ki 71.5 3.3 7.2E-05 42.5 2.9 81 779-898 3-89 (200)
288 PRK13538 cytochrome c biogenes 71.4 3.1 6.7E-05 41.9 2.6 24 775-798 25-48 (204)
289 PRK11629 lolD lipoprotein tran 71.4 2.9 6.3E-05 42.8 2.5 24 775-798 33-56 (233)
290 PRK00023 cmk cytidylate kinase 71.4 2.8 6.2E-05 43.8 2.5 26 777-802 4-29 (225)
291 PF08477 Miro: Miro-like prote 71.0 3.4 7.3E-05 37.0 2.5 24 780-803 2-25 (119)
292 cd00984 DnaB_C DnaB helicase C 70.9 3.2 6.9E-05 42.2 2.6 23 776-798 12-34 (242)
293 cd04145 M_R_Ras_like M-Ras/R-R 70.9 3 6.5E-05 38.7 2.2 20 780-799 5-24 (164)
294 CHL00059 atpA ATP synthase CF1 70.9 11 0.00023 44.9 7.2 154 781-963 145-321 (485)
295 cd01868 Rab11_like Rab11-like. 70.8 2.9 6.3E-05 39.2 2.2 20 780-799 6-25 (165)
296 PRK14249 phosphate ABC transpo 70.8 3 6.5E-05 43.1 2.5 24 775-798 28-51 (251)
297 TIGR03375 type_I_sec_LssB type 70.6 3.8 8.1E-05 48.7 3.5 25 775-799 489-513 (694)
298 cd04175 Rap1 Rap1 subgroup. T 70.6 3 6.6E-05 39.2 2.2 19 780-798 4-22 (164)
299 cd03218 ABC_YhbG The ABC trans 70.5 3.2 6.9E-05 42.1 2.6 24 775-798 24-47 (232)
300 TIGR03608 L_ocin_972_ABC putat 70.4 3.3 7.1E-05 41.2 2.5 24 775-798 22-45 (206)
301 cd03266 ABC_NatA_sodium_export 70.4 3.2 7E-05 41.7 2.5 23 775-797 29-51 (218)
302 cd03283 ABC_MutS-like MutS-lik 70.4 3.2 6.9E-05 42.6 2.5 23 776-798 24-46 (199)
303 PRK15177 Vi polysaccharide exp 70.4 3.2 7E-05 42.5 2.6 25 775-799 11-35 (213)
304 cd04101 RabL4 RabL4 (Rab-like4 70.4 3 6.6E-05 38.9 2.2 20 780-799 3-22 (164)
305 cd03263 ABC_subfamily_A The AB 70.3 3.3 7.1E-05 41.7 2.5 24 775-798 26-49 (220)
306 cd03268 ABC_BcrA_bacitracin_re 70.3 3.3 7.1E-05 41.5 2.6 24 775-798 24-47 (208)
307 PRK13540 cytochrome c biogenes 70.3 3.3 7.2E-05 41.5 2.6 24 775-798 25-48 (200)
308 PRK11022 dppD dipeptide transp 70.3 3.1 6.8E-05 45.7 2.6 26 775-800 31-56 (326)
309 PRK09493 glnQ glutamine ABC tr 70.2 3.3 7.2E-05 42.4 2.6 24 775-798 25-48 (240)
310 PRK14244 phosphate ABC transpo 70.2 3.1 6.8E-05 43.0 2.5 24 775-798 29-52 (251)
311 PRK08084 DNA replication initi 70.2 2.9 6.4E-05 43.6 2.3 22 778-799 46-67 (235)
312 cd03216 ABC_Carb_Monos_I This 70.1 3.3 7.1E-05 40.7 2.5 24 775-798 24-47 (163)
313 cd03224 ABC_TM1139_LivF_branch 70.1 3.5 7.6E-05 41.5 2.7 23 775-797 24-46 (222)
314 PRK14242 phosphate transporter 70.1 3.2 6.9E-05 42.9 2.5 24 775-798 30-53 (253)
315 PRK10744 pstB phosphate transp 70.1 3.1 6.7E-05 43.4 2.4 24 775-798 37-60 (260)
316 PRK14250 phosphate ABC transpo 70.1 3.3 7.1E-05 42.8 2.5 24 775-798 27-50 (241)
317 TIGR02315 ABC_phnC phosphonate 70.0 3.2 7E-05 42.4 2.5 24 775-798 26-49 (243)
318 PRK11248 tauB taurine transpor 70.0 3.3 7.1E-05 43.5 2.6 24 775-798 25-48 (255)
319 cd01863 Rab18 Rab18 subfamily. 70.0 3.4 7.3E-05 38.5 2.4 20 780-799 3-22 (161)
320 cd03256 ABC_PhnC_transporter A 70.0 3.3 7.2E-05 42.1 2.5 24 775-798 25-48 (241)
321 TIGR03864 PQQ_ABC_ATP ABC tran 70.0 3.3 7.1E-05 42.5 2.5 24 775-798 25-48 (236)
322 PRK09281 F0F1 ATP synthase sub 69.9 20 0.00043 42.7 9.1 194 780-1003 165-391 (502)
323 COG4136 ABC-type uncharacteriz 69.9 3.6 7.9E-05 43.5 2.8 26 775-800 26-51 (213)
324 PRK11247 ssuB aliphatic sulfon 69.9 3.2 7E-05 44.0 2.5 24 775-798 36-59 (257)
325 PRK12288 GTPase RsgA; Reviewed 69.9 2.3 5E-05 47.7 1.5 20 779-798 207-226 (347)
326 PRK11264 putative amino-acid A 69.9 3.4 7.3E-05 42.5 2.6 24 775-798 27-50 (250)
327 COG1116 TauB ABC-type nitrate/ 69.8 3.2 6.9E-05 45.5 2.5 23 775-797 27-49 (248)
328 PRK10418 nikD nickel transport 69.8 3.2 7E-05 43.2 2.5 24 775-798 27-50 (254)
329 PRK10247 putative ABC transpor 69.8 3.4 7.4E-05 42.2 2.6 24 775-798 31-54 (225)
330 PRK04220 2-phosphoglycerate ki 69.7 3.3 7.2E-05 46.2 2.7 36 778-819 93-128 (301)
331 cd01128 rho_factor Transcripti 69.6 12 0.00027 40.3 6.8 30 773-802 12-41 (249)
332 cd03259 ABC_Carb_Solutes_like 69.6 3.6 7.8E-05 41.4 2.6 24 775-798 24-47 (213)
333 cd03253 ABCC_ATM1_transporter 69.6 5.7 0.00012 40.5 4.1 24 775-798 25-48 (236)
334 cd03270 ABC_UvrA_I The excisio 69.6 3.5 7.5E-05 42.7 2.6 24 775-798 19-42 (226)
335 cd01886 EF-G Elongation factor 69.5 14 0.00031 39.9 7.2 23 781-803 3-25 (270)
336 PRK12338 hypothetical protein; 69.5 3.5 7.7E-05 46.3 2.8 24 778-801 5-28 (319)
337 cd01864 Rab19 Rab19 subfamily. 69.4 3.3 7.1E-05 39.1 2.2 20 780-799 6-25 (165)
338 PRK00440 rfc replication facto 69.4 8 0.00017 40.5 5.2 24 780-803 41-64 (319)
339 cd03226 ABC_cobalt_CbiO_domain 69.4 3.4 7.3E-05 41.4 2.4 24 775-798 24-47 (205)
340 PRK10575 iron-hydroxamate tran 69.3 3.3 7.2E-05 43.4 2.4 24 775-798 35-58 (265)
341 PRK13951 bifunctional shikimat 69.3 3.1 6.7E-05 48.6 2.4 24 779-802 2-25 (488)
342 PRK07429 phosphoribulokinase; 69.2 14 0.0003 41.4 7.3 25 778-802 9-33 (327)
343 PRK10867 signal recognition pa 69.2 11 0.00024 43.9 6.7 46 776-822 99-144 (433)
344 cd01130 VirB11-like_ATPase Typ 69.1 3.6 7.7E-05 41.2 2.5 25 776-800 24-48 (186)
345 TIGR01241 FtsH_fam ATP-depende 69.0 4.4 9.5E-05 46.7 3.5 23 776-800 89-111 (495)
346 PRK14270 phosphate ABC transpo 69.0 3.6 7.8E-05 42.6 2.6 24 775-798 28-51 (251)
347 PRK14260 phosphate ABC transpo 69.0 3.6 7.7E-05 43.0 2.6 24 775-798 31-54 (259)
348 TIGR00929 VirB4_CagE type IV s 69.0 8.9 0.00019 45.9 6.1 66 781-882 438-503 (785)
349 cd04118 Rab24 Rab24 subfamily. 68.9 3.4 7.3E-05 40.3 2.3 20 780-799 3-22 (193)
350 PRK13539 cytochrome c biogenes 68.9 3.7 8E-05 41.5 2.6 24 775-798 26-49 (207)
351 TIGR01243 CDC48 AAA family ATP 68.9 5.9 0.00013 47.9 4.7 58 780-842 215-279 (733)
352 PRK10865 protein disaggregatio 68.9 6 0.00013 49.2 4.9 59 782-841 204-278 (857)
353 TIGR03410 urea_trans_UrtE urea 68.8 3.6 7.8E-05 41.8 2.5 24 775-798 24-47 (230)
354 TIGR02982 heterocyst_DevA ABC 68.8 3.5 7.7E-05 41.8 2.4 23 775-797 29-51 (220)
355 cd03258 ABC_MetN_methionine_tr 68.8 3.6 7.8E-05 41.9 2.5 24 775-798 29-52 (233)
356 PRK14259 phosphate ABC transpo 68.7 3.6 7.8E-05 43.5 2.6 24 775-798 37-60 (269)
357 PRK00081 coaE dephospho-CoA ki 68.7 4.1 9E-05 41.3 2.9 22 778-799 3-24 (194)
358 cd01849 YlqF_related_GTPase Yl 68.7 3.9 8.5E-05 39.4 2.6 25 776-800 99-123 (155)
359 cd04155 Arl3 Arl3 subfamily. 68.7 4 8.7E-05 38.6 2.6 23 777-799 14-36 (173)
360 PRK13541 cytochrome c biogenes 68.7 3.8 8.3E-05 40.9 2.6 24 775-798 24-47 (195)
361 PRK14241 phosphate transporter 68.5 3.6 7.8E-05 42.8 2.5 24 775-798 28-51 (258)
362 PRK14273 phosphate ABC transpo 68.5 3.6 7.8E-05 42.6 2.4 24 775-798 31-54 (254)
363 PF10662 PduV-EutP: Ethanolami 68.3 3.3 7.1E-05 42.0 2.1 20 780-799 4-23 (143)
364 cd03289 ABCC_CFTR2 The CFTR su 68.3 6.6 0.00014 42.4 4.5 26 775-800 28-53 (275)
365 cd01393 recA_like RecA is a b 68.3 3.8 8.2E-05 41.3 2.5 23 776-798 18-40 (226)
366 TIGR03771 anch_rpt_ABC anchore 68.2 3.7 8.1E-05 42.0 2.5 24 775-798 4-27 (223)
367 cd03235 ABC_Metallic_Cations A 68.1 3.8 8.2E-05 41.2 2.5 23 775-797 23-45 (213)
368 PRK04213 GTP-binding protein; 68.1 4.2 9.1E-05 40.0 2.7 24 776-799 8-31 (201)
369 cd03290 ABCC_SUR1_N The SUR do 68.1 3.7 8.1E-05 41.5 2.4 24 775-798 25-48 (218)
370 cd03116 MobB Molybdenum is an 68.0 3.9 8.4E-05 41.2 2.5 24 779-802 3-26 (159)
371 cd02026 PRK Phosphoribulokinas 68.0 3.5 7.5E-05 44.7 2.3 23 780-802 2-24 (273)
372 TIGR02211 LolD_lipo_ex lipopro 67.9 3.9 8.4E-05 41.2 2.5 24 775-798 29-52 (221)
373 PRK13638 cbiO cobalt transport 67.8 3.7 8.1E-05 43.2 2.5 23 775-797 25-47 (271)
374 PRK11300 livG leucine/isoleuci 67.7 4.1 8.8E-05 42.1 2.7 24 775-798 29-52 (255)
375 cd04171 SelB SelB subfamily. 67.7 3.5 7.6E-05 38.0 2.0 21 779-799 2-22 (164)
376 PRK13830 conjugal transfer pro 67.6 4.1 8.8E-05 50.3 3.1 71 775-881 455-529 (818)
377 PRK13646 cbiO cobalt transport 67.5 3.7 8E-05 43.8 2.4 24 775-798 31-54 (286)
378 PRK14243 phosphate transporter 67.4 4 8.7E-05 42.9 2.6 24 775-798 34-57 (264)
379 PRK13647 cbiO cobalt transport 67.3 4 8.6E-05 43.4 2.5 24 775-798 29-52 (274)
380 cd03234 ABCG_White The White s 67.3 4.2 9.2E-05 41.4 2.7 25 775-799 31-55 (226)
381 cd02029 PRK_like Phosphoribulo 67.2 3.2 6.9E-05 46.1 1.9 38 780-819 2-39 (277)
382 cd03238 ABC_UvrA The excision 67.2 4.6 9.9E-05 41.2 2.8 24 775-798 19-42 (176)
383 PRK14262 phosphate ABC transpo 67.1 3.9 8.5E-05 42.2 2.4 24 775-798 27-50 (250)
384 PRK14251 phosphate ABC transpo 67.1 4 8.7E-05 42.1 2.5 24 775-798 28-51 (251)
385 PRK00098 GTPase RsgA; Reviewed 67.0 3.8 8.2E-05 44.5 2.4 23 777-799 164-186 (298)
386 cd03293 ABC_NrtD_SsuB_transpor 67.0 4.1 8.8E-05 41.3 2.4 24 775-798 28-51 (220)
387 PHA03135 thymidine kinase; Pro 66.9 4.3 9.4E-05 46.3 2.9 23 777-799 10-32 (343)
388 cd03214 ABC_Iron-Siderophores_ 66.9 4.3 9.2E-05 40.2 2.5 24 775-798 23-46 (180)
389 KOG1424 Predicted GTP-binding 66.9 5.8 0.00012 47.6 3.9 48 749-798 288-335 (562)
390 cd03229 ABC_Class3 This class 66.8 4.5 9.6E-05 40.0 2.6 24 775-798 24-47 (178)
391 TIGR03783 Bac_Flav_CT_G Bacter 66.7 20 0.00044 44.8 8.7 85 320-422 112-196 (829)
392 PRK06620 hypothetical protein; 66.6 4.2 9.1E-05 42.4 2.5 23 780-802 47-69 (214)
393 cd03245 ABCC_bacteriocin_expor 66.5 4.3 9.4E-05 40.9 2.5 24 775-798 28-51 (220)
394 PRK10751 molybdopterin-guanine 66.3 4.4 9.5E-05 41.9 2.5 23 779-801 8-30 (173)
395 PRK13639 cbiO cobalt transport 66.3 4.2 9E-05 43.1 2.5 23 775-797 26-48 (275)
396 cd01860 Rab5_related Rab5-rela 66.2 4.2 9.1E-05 37.9 2.2 21 780-800 4-24 (163)
397 PRK10908 cell division protein 66.2 4.4 9.5E-05 41.1 2.5 24 775-798 26-49 (222)
398 PF01637 Arch_ATPase: Archaeal 66.1 3.8 8.2E-05 39.9 2.0 27 777-803 20-46 (234)
399 TIGR03878 thermo_KaiC_2 KaiC d 66.1 4.4 9.5E-05 43.1 2.6 24 776-799 35-58 (259)
400 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 66.0 4.2 9.1E-05 38.3 2.2 20 780-799 5-24 (166)
401 TIGR00968 3a0106s01 sulfate AB 66.0 4.5 9.8E-05 41.7 2.6 25 774-798 23-47 (237)
402 PRK13477 bifunctional pantoate 66.0 4.2 9.1E-05 48.2 2.6 26 776-801 283-308 (512)
403 cd04115 Rab33B_Rab33A Rab33B/R 66.0 4.2 9.1E-05 38.9 2.2 20 780-799 5-24 (170)
404 cd01983 Fer4_NifH The Fer4_Nif 66.0 3.9 8.5E-05 34.2 1.8 70 780-873 2-72 (99)
405 cd03230 ABC_DR_subfamily_A Thi 65.9 4.6 0.0001 39.7 2.5 23 775-797 24-46 (173)
406 TIGR02324 CP_lyasePhnL phospho 65.8 4.6 9.9E-05 40.9 2.6 24 775-798 32-55 (224)
407 COG1124 DppF ABC-type dipeptid 65.8 12 0.00026 41.5 5.7 69 775-854 31-106 (252)
408 PRK14237 phosphate transporter 65.7 4.4 9.5E-05 42.7 2.5 24 775-798 44-67 (267)
409 COG1100 GTPase SAR1 and relate 65.7 4 8.6E-05 40.3 2.0 22 778-799 6-27 (219)
410 PRK05416 glmZ(sRNA)-inactivati 65.7 4.6 0.0001 44.4 2.7 22 777-798 6-27 (288)
411 PRK13634 cbiO cobalt transport 65.7 4.3 9.2E-05 43.6 2.4 24 775-798 31-54 (290)
412 cd04104 p47_IIGP_like p47 (47- 65.5 4.2 9.1E-05 40.9 2.2 20 780-799 4-23 (197)
413 PRK09473 oppD oligopeptide tra 65.5 4.4 9.6E-05 44.7 2.6 25 775-799 40-64 (330)
414 PRK14268 phosphate ABC transpo 65.4 4.5 9.8E-05 42.2 2.5 24 775-798 36-59 (258)
415 TIGR01189 ccmA heme ABC export 65.3 4.8 0.0001 40.2 2.6 24 775-798 24-47 (198)
416 PRK14248 phosphate ABC transpo 65.3 4.7 0.0001 42.3 2.6 25 775-799 45-69 (268)
417 KOG3079 Uridylate kinase/adeny 65.2 3.3 7.2E-05 44.2 1.5 64 778-855 9-79 (195)
418 PRK14263 phosphate ABC transpo 65.2 4.5 9.7E-05 42.7 2.4 23 775-797 32-54 (261)
419 TIGR03740 galliderm_ABC gallid 65.2 4.9 0.00011 40.8 2.6 24 775-798 24-47 (223)
420 cd03112 CobW_like The function 65.1 5.1 0.00011 39.6 2.6 23 779-801 2-24 (158)
421 PRK14235 phosphate transporter 65.1 4.8 0.0001 42.4 2.6 24 775-798 43-66 (267)
422 PRK14274 phosphate ABC transpo 65.1 4.6 9.9E-05 42.1 2.4 24 775-798 36-59 (259)
423 PRK13546 teichoic acids export 64.9 4.7 0.0001 43.1 2.5 24 775-798 48-71 (264)
424 COG3839 MalK ABC-type sugar tr 64.7 4.5 9.7E-05 45.9 2.5 23 775-797 27-49 (338)
425 PRK13657 cyclic beta-1,2-gluca 64.7 4.4 9.5E-05 47.1 2.5 25 775-799 359-383 (588)
426 cd04127 Rab27A Rab27a subfamil 64.7 4.6 9.9E-05 38.6 2.2 20 780-799 7-26 (180)
427 PRK11831 putative ABC transpor 64.6 4.7 0.0001 42.5 2.5 24 775-798 31-54 (269)
428 PRK14272 phosphate ABC transpo 64.6 4.8 0.0001 41.5 2.5 24 775-798 28-51 (252)
429 TIGR02769 nickel_nikE nickel i 64.6 4.8 0.0001 42.3 2.5 24 775-798 35-58 (265)
430 TIGR00017 cmk cytidylate kinas 64.5 5 0.00011 42.1 2.6 24 778-801 3-26 (217)
431 TIGR03881 KaiC_arch_4 KaiC dom 64.5 5.3 0.00012 40.6 2.7 24 776-799 19-42 (229)
432 cd03213 ABCG_EPDR ABCG transpo 64.5 5 0.00011 40.4 2.5 24 775-798 33-56 (194)
433 TIGR02880 cbbX_cfxQ probable R 64.5 3.6 7.7E-05 44.5 1.6 31 928-964 179-209 (284)
434 cd00880 Era_like Era (E. coli 64.5 6.1 0.00013 34.9 2.8 19 783-801 2-20 (163)
435 PRK13643 cbiO cobalt transport 64.5 4.6 0.0001 43.2 2.4 24 775-798 30-53 (288)
436 cd04139 RalA_RalB RalA/RalB su 64.4 4.8 0.0001 37.2 2.2 97 780-893 3-99 (164)
437 PRK14252 phosphate ABC transpo 64.4 4.9 0.00011 42.1 2.5 24 775-798 40-63 (265)
438 PRK13645 cbiO cobalt transport 64.4 4.6 0.0001 43.0 2.4 24 775-798 35-58 (289)
439 TIGR01184 ntrCD nitrate transp 64.4 5 0.00011 41.3 2.6 24 775-798 9-32 (230)
440 PRK15467 ethanolamine utilizat 64.3 4.5 9.7E-05 39.5 2.1 19 780-798 4-22 (158)
441 PRK13547 hmuV hemin importer A 64.3 4.7 0.0001 43.1 2.4 24 775-798 25-48 (272)
442 PRK14265 phosphate ABC transpo 64.3 4.8 0.0001 42.8 2.5 24 775-798 44-67 (274)
443 PRK11034 clpA ATP-dependent Cl 64.2 5.9 0.00013 48.9 3.5 78 779-858 490-582 (758)
444 smart00173 RAS Ras subfamily o 64.2 4.9 0.00011 37.6 2.3 20 780-799 3-22 (164)
445 PRK14264 phosphate ABC transpo 64.2 4.9 0.00011 43.5 2.6 24 775-798 69-92 (305)
446 COG0194 Gmk Guanylate kinase [ 64.1 5.7 0.00012 42.3 2.9 28 776-804 3-30 (191)
447 PRK09984 phosphonate/organopho 64.1 4.9 0.00011 41.9 2.5 24 775-798 28-51 (262)
448 TIGR02639 ClpA ATP-dependent C 64.1 11 0.00024 45.9 5.7 81 779-861 486-581 (731)
449 cd03233 ABC_PDR_domain1 The pl 64.0 5.2 0.00011 40.5 2.6 24 775-798 31-54 (202)
450 PRK13648 cbiO cobalt transport 64.0 5 0.00011 42.2 2.5 24 775-798 33-56 (269)
451 PRK14236 phosphate transporter 63.9 4.9 0.00011 42.5 2.4 24 775-798 49-72 (272)
452 TIGR02857 CydD thiol reductant 63.9 4.8 0.0001 46.1 2.5 24 775-798 346-369 (529)
453 PRK15056 manganese/iron transp 63.9 5 0.00011 42.4 2.5 24 775-798 31-54 (272)
454 KOG3308 Uncharacterized protei 63.8 3.9 8.4E-05 44.4 1.7 25 781-805 5-32 (225)
455 PRK14721 flhF flagellar biosyn 63.7 12 0.00026 43.6 5.6 90 775-873 189-279 (420)
456 PRK03695 vitamin B12-transport 63.7 5.1 0.00011 41.8 2.5 23 775-797 20-42 (248)
457 TIGR01188 drrA daunorubicin re 63.6 5.2 0.00011 43.0 2.6 25 775-799 17-41 (302)
458 TIGR00962 atpA proton transloc 63.6 16 0.00034 43.5 6.7 199 775-1004 159-391 (501)
459 PRK14949 DNA polymerase III su 63.5 9.2 0.0002 48.6 5.0 34 780-813 41-76 (944)
460 TIGR03420 DnaA_homol_Hda DnaA 63.4 5.8 0.00013 39.7 2.7 26 775-800 36-61 (226)
461 PRK15112 antimicrobial peptide 63.3 5.1 0.00011 42.2 2.4 24 775-798 37-60 (267)
462 cd01124 KaiC KaiC is a circadi 63.3 4.5 9.7E-05 39.1 1.9 21 780-800 2-22 (187)
463 PRK14490 putative bifunctional 63.3 5.2 0.00011 44.6 2.6 27 776-802 4-30 (369)
464 PTZ00322 6-phosphofructo-2-kin 63.3 4.2 9E-05 48.9 2.0 26 776-801 214-239 (664)
465 PRK13649 cbiO cobalt transport 63.2 5.1 0.00011 42.3 2.4 24 775-798 31-54 (280)
466 cd01867 Rab8_Rab10_Rab13_like 63.1 5.1 0.00011 38.1 2.2 20 780-799 6-25 (167)
467 TIGR01288 nodI ATP-binding ABC 63.1 5.4 0.00012 43.0 2.6 24 775-798 28-51 (303)
468 PRK10895 lipopolysaccharide AB 63.1 5.4 0.00012 41.0 2.5 24 775-798 27-50 (241)
469 PRK15093 antimicrobial peptide 63.0 5.4 0.00012 43.8 2.6 26 775-800 31-56 (330)
470 cd01887 IF2_eIF5B IF2/eIF5B (i 62.9 5.2 0.00011 37.3 2.2 21 780-800 3-23 (168)
471 PRK09580 sufC cysteine desulfu 62.8 5.4 0.00012 40.9 2.4 24 775-798 25-48 (248)
472 cd03248 ABCC_TAP TAP, the Tran 62.8 5.4 0.00012 40.4 2.4 24 775-798 38-61 (226)
473 PRK11231 fecE iron-dicitrate t 62.8 5.4 0.00012 41.5 2.5 24 775-798 26-49 (255)
474 cd03215 ABC_Carb_Monos_II This 62.7 5.6 0.00012 39.5 2.5 24 775-798 24-47 (182)
475 cd03228 ABCC_MRP_Like The MRP 62.7 5.6 0.00012 39.1 2.4 25 775-799 26-50 (171)
476 COG0714 MoxR-like ATPases [Gen 62.7 5 0.00011 43.7 2.3 27 776-802 42-68 (329)
477 PF01591 6PF2K: 6-phosphofruct 62.7 5.5 0.00012 42.6 2.6 29 774-802 9-37 (222)
478 PRK13548 hmuV hemin importer A 62.7 5.2 0.00011 41.9 2.4 24 775-798 26-49 (258)
479 PRK13796 GTPase YqeH; Provisio 62.7 6.3 0.00014 44.2 3.1 23 779-801 162-184 (365)
480 cd03221 ABCF_EF-3 ABCF_EF-3 E 62.6 5.7 0.00012 38.5 2.4 23 775-797 24-46 (144)
481 PRK08972 fliI flagellum-specif 62.5 8.9 0.00019 45.1 4.3 94 773-871 158-260 (444)
482 PRK14275 phosphate ABC transpo 62.4 5.4 0.00012 42.7 2.4 24 775-798 63-86 (286)
483 cd03252 ABCC_Hemolysin The ABC 62.4 5.6 0.00012 40.6 2.5 24 775-798 26-49 (237)
484 PRK15455 PrkA family serine pr 62.4 4.9 0.00011 49.0 2.3 81 873-964 353-455 (644)
485 TIGR03522 GldA_ABC_ATP gliding 62.4 5.9 0.00013 42.7 2.8 24 775-798 26-49 (301)
486 cd03217 ABC_FeS_Assembly ABC-t 62.3 5.8 0.00013 40.0 2.5 24 775-798 24-47 (200)
487 PRK11614 livF leucine/isoleuci 62.3 5.8 0.00012 40.7 2.5 23 775-797 29-51 (237)
488 PF00437 T2SE: Type II/IV secr 62.3 5.7 0.00012 41.6 2.6 139 776-940 126-266 (270)
489 PRK11566 hdeB acid-resistance 62.3 6.5 0.00014 38.6 2.7 53 288-349 32-84 (102)
490 cd03237 ABC_RNaseL_inhibitor_d 62.2 5.6 0.00012 42.0 2.5 24 775-798 23-46 (246)
491 CHL00095 clpC Clp protease ATP 62.1 15 0.00032 45.5 6.3 81 780-861 542-639 (821)
492 TIGR03598 GTPase_YsxC ribosome 62.1 6.4 0.00014 38.5 2.7 28 773-800 14-41 (179)
493 PTZ00369 Ras-like protein; Pro 62.1 5.4 0.00012 39.3 2.2 21 779-799 7-27 (189)
494 PRK14239 phosphate transporter 62.0 5.7 0.00012 40.9 2.5 24 775-798 29-52 (252)
495 PHA03132 thymidine kinase; Pro 62.0 11 0.00025 45.6 5.2 44 776-827 256-299 (580)
496 PRK14245 phosphate ABC transpo 62.0 5.6 0.00012 41.2 2.4 24 775-798 27-50 (250)
497 PRK10584 putative ABC transpor 61.9 5.8 0.00013 40.3 2.4 24 775-798 34-57 (228)
498 cd03294 ABC_Pro_Gly_Bertaine T 61.9 5.6 0.00012 42.0 2.5 24 775-798 48-71 (269)
499 PRK07952 DNA replication prote 61.9 5.3 0.00011 43.0 2.3 23 779-801 101-123 (244)
500 COG1120 FepC ABC-type cobalami 61.9 5.5 0.00012 43.8 2.4 24 775-798 26-49 (258)
No 1
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.59 E-value=0.00016 Score=73.86 Aligned_cols=130 Identities=22% Similarity=0.339 Sum_probs=84.1
Q ss_pred Ecc-CCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc----cchHHHHHHhhcCCceEEEecCCCCChh----HHH
Q 046016 781 FFP-GIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG----KYWQKVADERRRKPYSVMLADKNAPNEE----VWR 851 (1112)
Q Consensus 781 FFP-gIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG----rYWqkVa~eR~kkp~si~lADKNaP~~~----vWr 851 (1112)
++| +.+||||||++..|-+.-|..|. .-.|-|+| +|-..+.++=.+....|.+||+|--..- +-.
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgH------vQnDnI~~k~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~~ 75 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGH------VQNDNITGKRKPKFIKAVLELLAKDTHPVVIADRNNHQKRERKQLFE 75 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCc------cccCCCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHHHHHHH
Confidence 345 89999999999999887765432 34566766 6666777777778899999999974432 222
Q ss_pred HHHHHhc-------cCCccccccccCCCCCCCCcCchHHHHHHHHHHhhcc-CCCCCCCCCCCC---chhHHHHHHHhhc
Q 046016 852 QIEDMCR-------RTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERV-NHPGNLDKNSPN---AGYVLLMFYHLYE 920 (1112)
Q Consensus 852 ~IedmC~-------~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~-nH~G~LDkssp~---Ag~VllMFy~LY~ 920 (1112)
.++.+.. ..+..++--+.+. . .-+.--+|.-||++|= ||- .|=.++.. .=.|+-.|.+=|+
T Consensus 76 ~~~~~~~~yl~~~~~~r~VaL~fv~~~-~------~~~i~~it~~RV~~RGDNHQ-Tika~~~~~~~~~~Im~gFi~rfe 147 (168)
T PF08303_consen 76 DVSQLKPDYLPYDTNVRFVALNFVHDD-D------LDEIRRITQDRVLARGDNHQ-TIKADSKDEKKVEGIMEGFIKRFE 147 (168)
T ss_pred HHHHhcccccccCCCeEEEEEEccCCC-C------HHHHHHHHHHHHHhcCcCcc-eeecCCCCHHHHHHHHHHHHHhcC
Confidence 3333332 2223333333332 1 1355689999999998 997 66655533 3346667777777
Q ss_pred CCch
Q 046016 921 GKSR 924 (1112)
Q Consensus 921 ~k~r 924 (1112)
..+.
T Consensus 148 p~~~ 151 (168)
T PF08303_consen 148 PVDP 151 (168)
T ss_pred CCCC
Confidence 6643
No 2
>PF09511 RNA_lig_T4_1: RNA ligase; InterPro: IPR019039 Members of this family include T4 phage proteins with ATP-dependent RNA ligase activity. Host defence to phage may include cleavage and inactivation of specific tRNA molecules; members of this family act to reverse this RNA damage. The enzyme is adenylated, transiently, on a Lys residue in a motif KXDGSL. This family also includes fungal tRNA ligases that have adenylyltransferase activity []. tRNA ligases are enzymes required for the splicing of precursor tRNA molecules containing introns. Please see the following relevant references: [, ]. ; PDB: 2C5U_B.
Probab=97.14 E-value=0.00065 Score=69.84 Aligned_cols=186 Identities=20% Similarity=0.214 Sum_probs=89.7
Q ss_pred HHhhhcccCccCCcchHHHHHHHHHHHHcCceeEEEEEeecceEE-EeecCCCccc--ccccCCCcchhhHHHHHHHHHH
Q 046016 199 EVRATFYPKFENEKSDQEIRMRMIEVVSNGLAAVEVTLKHSGSLF-MYAGHKGGAY--AKNSFGNVYTAVGVFVLGRMLR 275 (1112)
Q Consensus 199 qirAtFyPKFENEksDqeiR~rMie~Vs~G~~~lEVTLKHSGSLf-myaG~~Ggay--aKNS~gN~~TAvGv~vL~r~~r 275 (1112)
+|-+.=|+||=|-+.-.+....-++ .... .++|+-|.-|||. ...-+.|..+ +|.|+.+.+...+-..|.+.+
T Consensus 17 ~Iv~R~~~KFFN~~E~~~t~~~~l~--~~~~-p~~v~~K~dGsli~~~~~~~g~~~~~SK~s~~s~~a~~a~~~l~~~~- 92 (221)
T PF09511_consen 17 RIVARPFDKFFNIGENPETKWDALE--KLQT-PVEVYEKEDGSLIFIPYLDDGELIVASKGSFDSDHADWARELLEKQL- 92 (221)
T ss_dssp EEEE-------BTTSSGGGSS--GG---G---EEEEEEE--SEEE-EEEEETTEEEEEETTBSSSHHHHHHHHHHHSGG-
T ss_pred eEEECCCCCcccCCCcccccccccc--cccc-cEEEEEecCcEEEEEeeecCCeEEEEecCcccchHHHHHHHHHHHHh-
Confidence 3444457898877655544333332 1111 8889999999999 5555544444 399998888766644444432
Q ss_pred HHhhhHHHHhHHHHHHHHhhcceEEEeeehhhhccCCCCCCCCCceEE-eeeeccCCCCCcccccHHHHHHHHhcCCCCC
Q 046016 276 EAWGAQALKKQVEFNDFLEKNRMCISMELVTAVLGDHGQRPREDYAVV-TAVTELGNGKPKFYSTPEIIAFCRKWRLPTN 354 (1112)
Q Consensus 276 ~~wg~~a~~~Q~efndfle~nRl~iSmElVTavLGdHGqrP~~dY~Vv-TAvteL~ngkP~FysT~e~i~fCrkwrLPtN 354 (1112)
... .....+|...+.++..|.-||++.--.--|--.-..+-+++ .++-..-+|...=++-.++-.++++|++|.=
T Consensus 93 ---~~~-~~~~~~l~~~~~~~~~T~~fE~~~p~~~~~Vi~Y~~~~~~l~l~i~n~~tg~~~~l~~~~~~~~a~~~g~~~~ 168 (221)
T PF09511_consen 93 ---EKE-GKNLEELAEELLEPNYTFIFELCSPEFNRHVIEYEEEQLILLLAIRNNNTGEYITLPYDELDKIAKKFGFPRV 168 (221)
T ss_dssp ---GHH----HHHHHHHHHHTTEEEEEEEE-TT-S-SSS--SS-EEEE-EEEEETTT--B--HHHHHH-TTTGGGB--EE
T ss_pred ---hhh-hHHHHHHHHHHhhCCcEEEEEEecCcCCceeEecCCccceEEEEEEEcCCCceEecCHHHHHHHHHHhCCCce
Confidence 222 12344565778889999999987644334432223333555 7887776643322777888899999999966
Q ss_pred ceEeeeccchHHHHHHHHHHHHhcCCchhhhhhhccccccccCCCCcccchhhhhhceeeeeeec
Q 046016 355 HVWLFSTRKSVTSFFAAYDALCEEGTATSVCKALDDVADISVPGSKDHIQVQGEILEGLVARIVS 419 (1112)
Q Consensus 355 hvWlfstrksatsfFaAyDaLcEeG~aT~V~k~Ldeiadi~vpgs~~H~~~QGeILEGLVaR~V~ 419 (1112)
..|-+.+ ...+.+.++..... ..+.|+..||+|+|.-.
T Consensus 169 ~~~~~~~---~~e~~~~~~~~~~~------------------------~~~~~~~~EG~Vv~~~~ 206 (221)
T PF09511_consen 169 KSFTFEN---WEELKEFLEDEIID------------------------GAYNGEEIEGFVVRFED 206 (221)
T ss_dssp E-S---S------------TTHHH------------------------HHHH-SS--EEEEEETT
T ss_pred eEeeccc---ccccccchhhhhhh------------------------hhccCccCcEEEEEEEC
Confidence 5553333 33333333221111 12345669999999854
No 3
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.04 E-value=0.00062 Score=62.54 Aligned_cols=109 Identities=20% Similarity=0.294 Sum_probs=66.5
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCC--CCCcceecccccc---------cCccchHHH---HHHhhcCCceEEEecCCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGL--GDNRPIHTLMGDL---------TKGKYWQKV---ADERRRKPYSVMLADKNA 844 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~--g~~rpv~sLmGD~---------iKGrYWqkV---a~eR~kkp~si~lADKNa 844 (1112)
||++-|.||||||+|++++.+..+.. ..+--...+.++. ...+.|+-+ +..+.....+++|-+-|.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~~ 80 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTNL 80 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCcC
Confidence 57889999999999999998766621 0000000112211 112345443 233345777777754555
Q ss_pred CChhHHHHHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCC
Q 046016 845 PNEEVWRQIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPG 899 (1112)
Q Consensus 845 P~~~vWr~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G 899 (1112)
-. +-++.+.+++...+.....|+-+.. ..+|.-|+-+|..|.+
T Consensus 81 ~~-~~r~~~~~~~~~~~~~~~~v~l~~~-----------~~~~~~R~~~R~~~~~ 123 (143)
T PF13671_consen 81 SR-EERARLRELARKHGYPVRVVYLDAP-----------EETLRERLAQRNREGD 123 (143)
T ss_dssp SH-HHHHHHHHHHHHCTEEEEEEEECHH-----------HHHHHHHHHTTHCCCT
T ss_pred CH-HHHHHHHHHHHHcCCeEEEEEEECC-----------HHHHHHHHHhcCCccc
Confidence 44 5588999999888877666665441 2678999999887774
No 4
>PRK06762 hypothetical protein; Provisional
Probab=96.54 E-value=0.0073 Score=57.84 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=20.9
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
.++.+-|.|||||||+++.|.+..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467778999999999999998765
No 5
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.26 E-value=0.0012 Score=67.61 Aligned_cols=89 Identities=25% Similarity=0.218 Sum_probs=58.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCC---------
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPN--------- 846 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~--------- 846 (1112)
++.++++-|.||||||++|++|....| ..+++.||.++-.-+..+..+ ...+.|.+-|=|..++
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~------~~~~~~~D~~r~~~r~~~~~~-p~l~~s~~~a~~~~~~~~~~~~~~~ 74 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRA------IDIVLSGDYLREFLRPYVDDE-PVLAKSVYDAWEFYGSMTDENIVKG 74 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC------CeEEehhHHHHHHHHHhcCCC-CCcccccHHHHHHcCCcchhHHHHH
Confidence 467899999999999999999976632 235899999976555555444 2234443322111111
Q ss_pred -----hhHHHHHHHHhccCCccccccccCC
Q 046016 847 -----EEVWRQIEDMCRRTRASAVPVVPDS 871 (1112)
Q Consensus 847 -----~~vWr~IedmC~~t~A~~VPVvpds 871 (1112)
+-|+..|+.++...-..+.|||=|.
T Consensus 75 y~~q~~~v~~~L~~va~~~l~~G~sVIvEg 104 (197)
T PRK12339 75 YLDQARAIMPGINRVIRRALLNGEDLVIES 104 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3456667777777777777777665
No 6
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.08 E-value=0.021 Score=59.67 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
.|+++-|.|||||||||++|.+..
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 478889999999999999998765
No 7
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.00 E-value=0.011 Score=50.65 Aligned_cols=46 Identities=22% Similarity=0.370 Sum_probs=33.2
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchH
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQ 824 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWq 824 (1112)
+-.+++-|-||||||+|++.|.......+ ..+..+.++........
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~ 47 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLD 47 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHH
Confidence 34567788899999999999977666654 35777777765544443
No 8
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.78 E-value=0.0092 Score=61.49 Aligned_cols=45 Identities=27% Similarity=0.560 Sum_probs=33.8
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccc--hHH
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKY--WQK 825 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrY--Wqk 825 (1112)
||+|-|.|||||||++++|-......| ..++.+-+|.+...+ |.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~--~~v~~i~~D~lr~~~~~~~~ 47 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKN--IDVIILGTDLIRESFPVWKE 47 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcC--CceEEEccHHHHHHhHHhhH
Confidence 578999999999999999876554333 367777778887666 643
No 9
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.75 E-value=0.0088 Score=53.53 Aligned_cols=123 Identities=20% Similarity=0.371 Sum_probs=64.3
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc-------cchHH-HHHHhhcCCceEEEecCCCCChhHHH
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG-------KYWQK-VADERRRKPYSVMLADKNAPNEEVWR 851 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG-------rYWqk-Va~eR~kkp~si~lADKNaP~~~vWr 851 (1112)
|.+-|-||||||+|++.|.+..+ .|+..+.+..+.+ +.+.+ +.+.++.+...|++.|-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe--------- 66 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDE--------- 66 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEET---------
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----cccccccccccccccccccccccccccccccccccceeeeecc---------
Confidence 45679999999999999998864 3555443333332 22333 33333333136666652
Q ss_pred HHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCCchhhhHHHH
Q 046016 852 QIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGKSRKEFDGEL 931 (1112)
Q Consensus 852 ~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k~r~ef~seL 931 (1112)
++.++... ....+.+.-+.+. .++..|.+..-. +...+++.-.+- .+++...|
T Consensus 67 -~d~l~~~~------------~~~~~~~~~~~~~-~L~~~l~~~~~~--------~~~~~vI~ttn~-----~~~i~~~l 119 (132)
T PF00004_consen 67 -IDKLFPKS------------QPSSSSFEQRLLN-QLLSLLDNPSSK--------NSRVIVIATTNS-----PDKIDPAL 119 (132)
T ss_dssp -GGGTSHHC------------STSSSHHHHHHHH-HHHHHHHTTTTT--------SSSEEEEEEESS-----GGGSCHHH
T ss_pred -chhccccc------------ccccccccccccc-eeeecccccccc--------cccceeEEeeCC-----hhhCCHhH
Confidence 11111111 1223333333333 334455444222 222233333322 45778888
Q ss_pred H-HHhcCcEeeec
Q 046016 932 V-ERFGSLIKMPL 943 (1112)
Q Consensus 932 ~-~rF~~lVkmPl 943 (1112)
. .||...|++|+
T Consensus 120 ~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 120 LRSRFDRRIEFPL 132 (132)
T ss_dssp HSTTSEEEEEE-S
T ss_pred HhCCCcEEEEcCC
Confidence 9 99999999986
No 10
>PLN02200 adenylate kinase family protein
Probab=95.67 E-value=0.022 Score=59.55 Aligned_cols=39 Identities=31% Similarity=0.602 Sum_probs=32.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
....++|+-|.|||||||+|+.|.+..| + +|+-+||+++
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g-~-----~his~gdllR 79 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFG-F-----KHLSAGDLLR 79 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC-C-----eEEEccHHHH
Confidence 3457889999999999999999987663 2 5888999996
No 11
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.63 E-value=0.0059 Score=59.60 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=26.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGD 806 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~ 806 (1112)
.|++|.|-|+|||||||+|+.|.+..+..|.
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~ 32 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGY 32 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3899999999999999999999877665543
No 12
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.48 E-value=0.0061 Score=59.18 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=30.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
..|.+++|-|+|||||||++++|.+....-+. .+..+.||.+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~--~~~~~~~d~~ 46 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYS--NVIYLDGDEL 46 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC--cEEEEecHHH
Confidence 56889999999999999999998765443222 2445566665
No 13
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.46 E-value=0.027 Score=52.99 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.7
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
|+++-|+|||||||+++.|.+.++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCC
Confidence 5788899999999999999887643
No 14
>PRK08118 topology modulation protein; Reviewed
Probab=95.42 E-value=0.084 Score=52.41 Aligned_cols=63 Identities=11% Similarity=0.217 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcc-CCCCCCCCC----CCC-chhHHHHHHHhhcCCchhhhHHHHHHHhcCcEeeecccCC
Q 046016 884 LAVFMFRVLERV-NHPGNLDKN----SPN-AGYVLLMFYHLYEGKSRKEFDGELVERFGSLIKMPLLKDD 947 (1112)
Q Consensus 884 LAvfm~RvL~R~-nH~G~LDks----sp~-Ag~VllMFy~LY~~k~r~ef~seL~~rF~~lVkmPllk~d 947 (1112)
+.+|+.|+++|. .+.|..... .++ --..++.|..-|+.++++.+.. +.+.|..-.++=+|++.
T Consensus 89 ~~~~~~R~~~R~~~~~g~~~~~~~~g~~e~~~~~~l~wi~~~~~~~r~~~~~-~~~~~~~~~~~~~l~~~ 157 (167)
T PRK08118 89 RTICLYRAFKRRVQYRGKTRPDMGAGCEEKFDLQFFKWIWEYPKTKRPSILK-RLNQLSEEKDIVILKSR 157 (167)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCcccCCHHHHHHHHhCchhhhHHHHH-HHHhcCCCCeEEEECCH
Confidence 358999999995 223332211 121 1123666777888887766644 44566654555556554
No 15
>PRK14527 adenylate kinase; Provisional
Probab=95.32 E-value=0.094 Score=52.06 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=29.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
.|.++++-|-||||||++|+.|.+..|- .|.-+||+++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~------~~is~gd~~r 42 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGL------KKLSTGDILR 42 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC------CCCCccHHHH
Confidence 5778899999999999999999766643 3455677763
No 16
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.28 E-value=0.01 Score=53.43 Aligned_cols=40 Identities=35% Similarity=0.527 Sum_probs=27.4
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchH
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQ 824 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWq 824 (1112)
++++-|.|||||||+|++|.+.-| -.++-|+|.+.-..|.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~------~~~i~~d~~~~~~~~~ 40 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG------FPVISMDDLIREPGWI 40 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT------CEEEEEHHHHCCGTHC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC------CeEEEecceEEecccc
Confidence 578889999999999999977542 2334566633444443
No 17
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.27 E-value=0.0089 Score=57.79 Aligned_cols=36 Identities=33% Similarity=0.610 Sum_probs=29.5
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG 820 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG 820 (1112)
+|++-|.||+||||+|+.|.+..| -+|+-+||+++-
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~------~~~is~~d~lr~ 36 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG------FTHLSAGDLLRA 36 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC------CeEEECChHHHH
Confidence 478889999999999999977663 367778998853
No 18
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=95.06 E-value=0.58 Score=49.04 Aligned_cols=211 Identities=20% Similarity=0.252 Sum_probs=102.3
Q ss_pred EccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhc-------------CCceEEEecCCCCCh
Q 046016 781 FFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRR-------------KPYSVMLADKNAPNE 847 (1112)
Q Consensus 781 FFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~k-------------kp~si~lADKNaP~~ 847 (1112)
-+.|-+|||||+|++-|+...|.... .-.+-.|..+. .|=+ .+|.+ +...+.|.| .|..
T Consensus 3 ~ivG~~gsGKStL~~~Ll~~~g~~~~--~g~v~~g~~~~-d~~~---~e~~r~~ti~~~~~~~~~~~~~i~liD--tPG~ 74 (268)
T cd04170 3 ALVGHSGSGKTTLAEALLYATGAIDR--LGSVEDGTTVS-DYDP---EEIKRKMSISTSVAPLEWKGHKINLID--TPGY 74 (268)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCcc--CCeecCCcccC-CCCH---HHHhhcccccceeEEEEECCEEEEEEE--CcCH
Confidence 35699999999999999876655422 11112333221 1111 12221 345677777 3432
Q ss_pred -hHHHHHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcC--Cch
Q 046016 848 -EVWRQIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEG--KSR 924 (1112)
Q Consensus 848 -~vWr~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~--k~r 924 (1112)
+............... |-|+.-+.|.. .-..-+++.+.+.+.| ++.|.+-.|. .+.
T Consensus 75 ~~f~~~~~~~l~~aD~~-i~Vvd~~~g~~-------~~~~~~~~~~~~~~~p-------------~iivvNK~D~~~~~~ 133 (268)
T cd04170 75 ADFVGETRAALRAADAA-LVVVSAQSGVE-------VGTEKLWEFADEAGIP-------------RIIFINKMDRERADF 133 (268)
T ss_pred HHHHHHHHHHHHHCCEE-EEEEeCCCCCC-------HHHHHHHHHHHHcCCC-------------EEEEEECCccCCCCH
Confidence 2234444444433333 33444344421 1223344555443332 1123333332 234
Q ss_pred hhhHHHHHHHhcC---cEeeecccCCCCCCchhHHHHHHhhhhhhhhcccccCccccCCCCchhHHHHHHHHHHHhhcCC
Q 046016 925 KEFDGELVERFGS---LIKMPLLKDDRSPLPDHVRSVLEEGISWYKLHTSKHGRLESTKGSYAQEWAKWEKQMRETLFGN 1001 (1112)
Q Consensus 925 ~ef~seL~~rF~~---lVkmPllk~dr~~lP~~v~~~l~eGl~l~~~h~~~~gr~E~tkgsy~~ew~~WEkrlRe~Ll~~ 1001 (1112)
++..++|.++|+. .+.+|+-.++.- ..+..++.+-...| +.......+.....+..+-.+|..+|-|.+-.+
T Consensus 134 ~~~~~~l~~~~~~~~~~~~ip~~~~~~~---~~~vd~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~l~e~~a~~ 208 (268)
T cd04170 134 DKTLAALQEAFGRPVVPLQLPIGEGDDF---KGVVDLLTEKAYIY--SPGAPSEEIEIPEELKEEVAEAREELLEAVAET 208 (268)
T ss_pred HHHHHHHHHHhCCCeEEEEecccCCCce---eEEEEcccCEEEEc--cCCCcceeccCCHHHHHHHHHHHHHHHHHHhhC
Confidence 5677889999986 345565443322 01111222211112 111111122223344455556777787877777
Q ss_pred hh-----hhhhcccchHHHHHHHHHHHHh
Q 046016 1002 AD-----YLQSIQVPFESAVKQVLEQLKL 1025 (1112)
Q Consensus 1002 ~~-----~L~siQvpfe~~Vk~vleql~~ 1025 (1112)
+| ||+...++-|+..+...+.+++
T Consensus 209 dd~l~e~yl~~~~~~~~~l~~~l~~~~~~ 237 (268)
T cd04170 209 DDELMEKYLEGGELTEEELHAGLRRALRA 237 (268)
T ss_pred CHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 74 5677888877766666655543
No 19
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.05 E-value=0.042 Score=53.39 Aligned_cols=43 Identities=30% Similarity=0.621 Sum_probs=31.6
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
|-+|-++.|-|.||||||++++.|.......| ..+..+.||.+
T Consensus 1 ~~~g~~i~~~G~~GsGKST~a~~la~~l~~~g--~~v~~id~D~~ 43 (175)
T PRK00889 1 KQRGVTVWFTGLSGAGKTTIARALAEKLREAG--YPVEVLDGDAV 43 (175)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEcCccH
Confidence 35677899999999999999999876543222 24566677765
No 20
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.85 E-value=0.017 Score=55.52 Aligned_cols=35 Identities=34% Similarity=0.618 Sum_probs=27.8
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
-++++-|.|||||||||+.|.+..| -.+.-+||.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g------~~~~~~g~~~ 38 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG------FTHLSTGDLL 38 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC------CcEEeHHHHH
Confidence 4788899999999999999987652 2466677765
No 21
>PRK13975 thymidylate kinase; Provisional
Probab=94.79 E-value=0.012 Score=57.47 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.5
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
|+++.|=|+|||||||+++.|-+..+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999999776653
No 22
>PF08302 tRNA_lig_CPD: Fungal tRNA ligase phosphodiesterase domain; InterPro: IPR015965 This entry represents a phosphodiesterase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=94.75 E-value=0.077 Score=57.12 Aligned_cols=118 Identities=21% Similarity=0.365 Sum_probs=77.5
Q ss_pred chhhhHHHHHHHhcCcEeeecccCCCCCCchhHHHHHHhhhhhhhh---cccccCccccCCCCchhHHHHHHHHHHHhhc
Q 046016 923 SRKEFDGELVERFGSLIKMPLLKDDRSPLPDHVRSVLEEGISWYKL---HTSKHGRLESTKGSYAQEWAKWEKQMRETLF 999 (1112)
Q Consensus 923 ~r~ef~seL~~rF~~lVkmPllk~dr~~lP~~v~~~l~eGl~l~~~---h~~~~gr~E~tkgsy~~ew~~WEkrlRe~Ll 999 (1112)
+.+.-..+|++.|..+|+ ..|=+.++..-++.+|+-|.- |.-..+.....|... +
T Consensus 5 Nle~Ii~~L~~~yP~Lv~-------~~Ps~e~id~A~~~Al~~Ykp~~~k~~~~~~~~~~~~~~---------~------ 62 (257)
T PF08302_consen 5 NLETIINELHKKYPNLVP-------EVPSDEEIDEAFQKALNEYKPDFTKIIGKGSKNNKKKNN---------K------ 62 (257)
T ss_pred hHHHHHHHHHHhCchhcC-------CCCCHHHHHHHHHHHHhhCCCceEEECCcCCcccccccc---------c------
Confidence 456678899999988875 455667788888888886653 222211111111100 0
Q ss_pred CChhhhhhcccchHHHHHHHHHHHHhhhcccccCCcccccccceEEEEEeecChHHHHHHHHHHhcCC-cchhHHHH--H
Q 046016 1000 GNADYLQSIQVPFESAVKQVLEQLKLIAKGEYKAPSTEKRNFGTIVFAAVSLPVTEIQSLLVELAGKD-PTIDLFFK--E 1076 (1112)
Q Consensus 1000 ~~~~~L~siQvpfe~~Vk~vleql~~ia~gd~~~p~t~~r~f~~ivfaav~lp~~ei~~~l~~la~~~-~~v~~fl~--k 1076 (1112)
..|.. +=..++|-+|+||.++|.++|.++-..+ +....|++ +
T Consensus 63 --------------------------------~~~~~---kk~~p~Yf~i~i~~~~i~~~l~~~f~~~~~~~~~~~~~L~ 107 (257)
T PF08302_consen 63 --------------------------------SSPKK---KKKKPEYFGISIPTQDIKSLLEKLFEDSPPETARFYNQLK 107 (257)
T ss_pred --------------------------------cCccc---ccCCCeEEEEECCHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22323 5567889999999999999999999876 66667777 3
Q ss_pred HHHHhhhhhhheehhcccccc
Q 046016 1077 DLERNLKKAHVTLAHKRSHGV 1097 (1112)
Q Consensus 1077 ~~~~~l~~aHvTlaHkrshg~ 1097 (1112)
.-...=.+-||||+|..+.-.
T Consensus 108 ~~~RvQ~~FHVTL~H~as~k~ 128 (257)
T PF08302_consen 108 NSRRVQPEFHVTLIHRASSKE 128 (257)
T ss_pred hCCCCCCCCeEEEEecccCCc
Confidence 223333466999999766544
No 23
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.60 E-value=0.011 Score=59.58 Aligned_cols=48 Identities=21% Similarity=0.355 Sum_probs=38.1
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQK 825 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqk 825 (1112)
.|.+|+|-|.||+|||||++.|.+..-..| +++..|-||.++..++..
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LDgD~lR~~l~~d 48 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLDGDNLRHGLNAD 48 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEEHHHHCTTTTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEecCcchhhccCCC
Confidence 489999999999999999999987665555 489999999998655543
No 24
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.50 E-value=0.12 Score=52.45 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=27.5
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
.|++-|-||+|||++|+.|-+..| -.|+-+||+++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~------~~~is~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG------IPHISTGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CcEEECCccHH
Confidence 467789999999999999976654 24566888875
No 25
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.49 E-value=0.079 Score=51.94 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+|-|+++-|.||||||||+++|.+.-+
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 367899999999999999999987644
No 26
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=94.41 E-value=0.17 Score=59.47 Aligned_cols=139 Identities=17% Similarity=0.200 Sum_probs=83.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHH---HHHHhhcCCceEEEecCCCCChhHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQK---VADERRRKPYSVMLADKNAPNEEVWR 851 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqk---Va~eR~kkp~si~lADKNaP~~~vWr 851 (1112)
..--||.+.|.||||||++++++....|. ..+.-|.+ |. |++ .+.+..+...+|+|=.-|+-. +.=+
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~-------~~vn~D~l-g~-~~~~~~~a~~~L~~G~sVVIDaTn~~~-~~R~ 436 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGY-------KHVNADTL-GS-TQNCLTACERALDQGKRCAIDNTNPDA-ASRA 436 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCC-------eEECcHHH-HH-HHHHHHHHHHHHhCCCcEEEECCCCCH-HHHH
Confidence 45568889999999999999999875321 23344655 33 443 444555677788776666544 2233
Q ss_pred HHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCCchhhhHHHH
Q 046016 852 QIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGKSRKEFDGEL 931 (1112)
Q Consensus 852 ~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k~r~ef~seL 931 (1112)
...+++...+ +|+.-- =|... +.+|+-|.-+|..++.. | .+-...|+-+|+.-|+-- .+
T Consensus 437 ~~i~lAk~~g---v~v~~i-------~~~~p-~e~~~~Rn~~R~~~~~s-~--~~vp~~v~~~~~k~fE~P-------t~ 495 (526)
T TIGR01663 437 KFLQCARAAG---IPCRCF-------LFNAP-LAQAKHNIAFRELSDSA-H--IKIKDMVFNGMKKKFEAP-------AL 495 (526)
T ss_pred HHHHHHHHcC---CeEEEE-------EeCCC-HHHHHHHHHhhccCCcc-c--CCCCHHHHHHHHhhCCCC-------Cc
Confidence 4555555443 343211 11111 56899999888643211 1 233456777777777532 24
Q ss_pred HHHhcCcEeeecc
Q 046016 932 VERFGSLIKMPLL 944 (1112)
Q Consensus 932 ~~rF~~lVkmPll 944 (1112)
.|-|..++++++.
T Consensus 496 ~EGF~~I~~v~f~ 508 (526)
T TIGR01663 496 AEGFIAIHEINFK 508 (526)
T ss_pred ccCceEEEEEeCc
Confidence 5578889999865
No 27
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.40 E-value=0.035 Score=55.87 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=26.4
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+|.+|.+|.+-|.+|||||||++.|.....
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 567899999999999999999999976544
No 28
>PRK03839 putative kinase; Provisional
Probab=94.38 E-value=0.024 Score=55.30 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=20.9
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
++++-|.|||||||+|+.|-+..|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578889999999999999977653
No 29
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.22 E-value=0.026 Score=50.36 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=19.3
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|++=|+||+||||||++|.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4677999999999999998765
No 30
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.95 E-value=0.038 Score=52.09 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=23.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.++.++++-|.||||||+|.++|-+..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 367789999999999999999997765
No 31
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.92 E-value=0.035 Score=54.22 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=25.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLG 805 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g 805 (1112)
.|.++.|=|++||||||+|+.|.+...+.|
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~ 31 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQG 31 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999987655544
No 32
>PRK14530 adenylate kinase; Provisional
Probab=93.91 E-value=0.031 Score=56.52 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=30.1
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG 820 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG 820 (1112)
|..+++-|.|||||||+|+.|....| ..|+-+||.++.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~------~~~i~~g~~lr~ 40 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFG------VEHVTTGDALRA 40 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC------CeEEeccHHHHH
Confidence 44678899999999999999977653 357778888763
No 33
>PRK14531 adenylate kinase; Provisional
Probab=93.70 E-value=0.034 Score=55.06 Aligned_cols=35 Identities=34% Similarity=0.501 Sum_probs=28.1
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
.+++-|.|||||||+|+.|-+..| -+|+-+||+++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g------~~~is~gd~lr 38 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG------LRHLSTGDLLR 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CCeEecccHHH
Confidence 467789999999999999977653 24677899874
No 34
>PRK08233 hypothetical protein; Provisional
Probab=93.66 E-value=0.055 Score=51.78 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.8
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+.||++-|.||+||||||+.|....+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 58899999999999999999976644
No 35
>PRK00625 shikimate kinase; Provisional
Probab=93.65 E-value=0.04 Score=55.53 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.8
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+|+-|+||||||++|+.|-+..|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999966653
No 36
>PRK04040 adenylate kinase; Provisional
Probab=93.48 E-value=0.051 Score=55.15 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=21.4
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
..++++-|+|||||||+|+.|.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999986654
No 37
>PRK14532 adenylate kinase; Provisional
Probab=93.46 E-value=0.043 Score=53.76 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=30.0
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCcc
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGK 821 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGr 821 (1112)
-+++-|-|||||||+|+.|-+..| -.|+-+||+++-.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g------~~~is~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG------MVQLSTGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC------CeEEeCcHHHHHH
Confidence 367789999999999999977664 3577789998753
No 38
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.32 E-value=0.13 Score=45.11 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=22.6
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+-.+++-|-||||||+|++++.+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 455678899999999999999987653
No 39
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.21 E-value=0.084 Score=52.85 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=24.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
..+.+|..-|.|||||||||+.|.+.-
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998765
No 40
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.17 E-value=0.053 Score=53.28 Aligned_cols=80 Identities=19% Similarity=0.309 Sum_probs=49.4
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHH---
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVW--- 850 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vW--- 850 (1112)
..+|.++.+.|.||||||+|++.|......-| ..+..+-||.++-.. ..+....+++.|
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~--~~~~~l~~d~~r~~l----------------~~~~~~~~~~~~~~~ 76 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKG--YRVYVLDGDNVRHGL----------------NKDLGFSEEDRKENI 76 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEECChHHHhhh----------------ccccCCCHHHHHHHH
Confidence 36789999999999999999999876543222 245566777665110 011111233334
Q ss_pred HHHHHHhccCCccccccccCC
Q 046016 851 RQIEDMCRRTRASAVPVVPDS 871 (1112)
Q Consensus 851 r~IedmC~~t~A~~VPVvpds 871 (1112)
+.+..+|..-...+..||.|.
T Consensus 77 ~~~~~~~~~~~~~G~~VI~d~ 97 (184)
T TIGR00455 77 RRIGEVAKLFVRNGIIVITSF 97 (184)
T ss_pred HHHHHHHHHHHcCCCEEEEec
Confidence 444455555556688888774
No 41
>PRK08356 hypothetical protein; Provisional
Probab=93.17 E-value=0.092 Score=52.54 Aligned_cols=37 Identities=22% Similarity=0.165 Sum_probs=28.9
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
+.+++++-|-|||||||+|+-|.+ . |+ + ++-+||.++
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~-g~----~-~is~~~~~~ 40 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-K-GF----C-RVSCSDPLI 40 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-C-CC----c-EEeCCCccc
Confidence 457889999999999999999953 3 33 3 666888764
No 42
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.04 E-value=0.061 Score=51.50 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=20.3
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
+++.|=|++||||||||+.|.+..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 467888999999999999986654
No 43
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.93 E-value=0.14 Score=49.64 Aligned_cols=39 Identities=26% Similarity=0.502 Sum_probs=25.7
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
+|++-|.||||||+|++.|...--.-|. .+..+.||.++
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~--~~~~i~~d~~r 39 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGR--PVYVLDGDNVR 39 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCC--CEEEEcCHHHH
Confidence 3677899999999999998664321121 34445566543
No 44
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.83 E-value=0.09 Score=51.97 Aligned_cols=31 Identities=35% Similarity=0.574 Sum_probs=26.1
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCCC
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGGL 804 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg~ 804 (1112)
+.+|-++.+.|.+|||||+|++.|.....++
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~~~ 32 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDPNL 32 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCccc
Confidence 4689999999999999999999997764333
No 45
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.76 E-value=0.14 Score=49.75 Aligned_cols=35 Identities=29% Similarity=0.465 Sum_probs=27.6
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG 820 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG 820 (1112)
|++-|.||||||++|+.|-+..| -.|.-+||+++-
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~------~~~i~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG------LPHISTGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC------CeEEECcHHHHH
Confidence 56779999999999999977653 246778888853
No 46
>PRK14528 adenylate kinase; Provisional
Probab=92.63 E-value=0.48 Score=47.64 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=26.2
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
+++-|-||||||++|+.|.+..| -.|+.+||.++
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~~------~~~is~~~~lr 37 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERLS------IPQISTGDILR 37 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC------CCeeeCCHHHH
Confidence 56779999999999999966543 23566788875
No 47
>COG3596 Predicted GTPase [General function prediction only]
Probab=92.42 E-value=0.3 Score=54.26 Aligned_cols=111 Identities=25% Similarity=0.384 Sum_probs=74.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh------cCCCCCCC---------------------------cc------------
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN------APGGLGDN---------------------------RP------------ 809 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~------~pgg~g~~---------------------------rp------------ 809 (1112)
.+=+.+..-|-.|||||+||+.|.. +..|.|.+ +-
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~ 116 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYLP 116 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHhh
Confidence 4557788899999999999999873 11222210 00
Q ss_pred ------eecccccccCc---cchHHHHHHhhcCCc--eEEEecCCCCChhHHHH-------------------HHHHhcc
Q 046016 810 ------IHTLMGDLTKG---KYWQKVADERRRKPY--SVMLADKNAPNEEVWRQ-------------------IEDMCRR 859 (1112)
Q Consensus 810 ------v~sLmGD~iKG---rYWqkVa~eR~kkp~--si~lADKNaP~~~vWr~-------------------IedmC~~ 859 (1112)
+-.-++|.-.| +||+.|...--+++. .|.=+||-.|-.+ |+. +.+.|..
T Consensus 117 ~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~-W~~~~~~p~~a~~qfi~~k~~~~~~~~q~ 195 (296)
T COG3596 117 KLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGRE-WDSAGHQPSPAIKQFIEEKAEALGRLFQE 195 (296)
T ss_pred hccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccc-cccccCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 00114554444 889999888777664 4455788777533 432 4445554
Q ss_pred CCccccccccCCCCCCCCcCchHHHHHHHHHHhh
Q 046016 860 TRASAVPVVPDSGGTESNPFSLDALAVFMFRVLE 893 (1112)
Q Consensus 860 t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~ 893 (1112)
--||+..+ ...||-|+.|+.-|.++|.
T Consensus 196 ----V~pV~~~~---~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 196 ----VKPVVAVS---GRLPWGLKELVRALITALP 222 (296)
T ss_pred ----cCCeEEec---cccCccHHHHHHHHHHhCc
Confidence 34777776 6889999999999999987
No 48
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.34 E-value=0.075 Score=48.94 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=19.8
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
|+++-|.||||||++|+.|....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999997654
No 49
>PRK13973 thymidylate kinase; Provisional
Probab=92.34 E-value=0.093 Score=53.51 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.2
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
|+++.|=||+||||||+|+.|.+..
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l 27 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERL 27 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 8888899999999999999986654
No 50
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.29 E-value=0.098 Score=52.46 Aligned_cols=43 Identities=30% Similarity=0.518 Sum_probs=32.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
..|.++.|.|.||||||||.+.|.......| ..+-.+.||.+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~--~~~~~ld~d~~~ 64 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELG--VSTYLLDGDNVR 64 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCC--CCEEEEcCEeHH
Confidence 5678999999999999999999877442222 245567788776
No 51
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.23 E-value=0.062 Score=55.61 Aligned_cols=66 Identities=24% Similarity=0.317 Sum_probs=42.2
Q ss_pred EccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHhccC
Q 046016 781 FFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMCRRT 860 (1112)
Q Consensus 781 FFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC~~t 860 (1112)
..-|-||||||+||+.|-..- | -.++.|||.+|-+=-++=-+|-.|-|. .| -..|-..+||.-..+
T Consensus 11 LvtGTPG~GKstl~~~lae~~-~-----~~~i~isd~vkEn~l~~gyDE~y~c~i----~D----Edkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 11 LVTGTPGTGKSTLAERLAEKT-G-----LEYIEISDLVKENNLYEGYDEEYKCHI----LD----EDKVLDELEPLMIEG 76 (176)
T ss_pred EEeCCCCCCchhHHHHHHHHh-C-----CceEehhhHHhhhcchhcccccccCcc----cc----HHHHHHHHHHHHhcC
Confidence 346999999999999996433 2 357899999996544444444444332 22 234556677766553
No 52
>PRK04182 cytidylate kinase; Provisional
Probab=91.80 E-value=0.11 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=21.5
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+++++-|.||||||++++.|.+..|
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678889999999999999977653
No 53
>PLN02924 thymidylate kinase
Probab=91.79 E-value=0.1 Score=54.43 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=26.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLG 805 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g 805 (1112)
..|+++-|=||+||||||+|+.|.+.....|
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g 44 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLG 44 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999977665444
No 54
>PLN02842 nucleotide kinase
Probab=91.79 E-value=0.37 Score=56.69 Aligned_cols=32 Identities=28% Similarity=0.592 Sum_probs=24.7
Q ss_pred ccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 782 FPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 782 FPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
+-|+|||||||+|+-|-+..+ -.|+.+||+++
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg------~~hIs~gdLLR 33 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFG------LVHISTGDLLR 33 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhC------CCEEEccHHHH
Confidence 359999999999999976542 35666888874
No 55
>PRK13808 adenylate kinase; Provisional
Probab=91.79 E-value=0.83 Score=51.37 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=28.2
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG 820 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG 820 (1112)
+++-|-||+|||++|+-|-+..| -+|+-+||+++.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg------l~~is~gdlLR~ 37 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG------IVQLSTGDMLRA 37 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC------CceecccHHHHH
Confidence 45678899999999999977653 278889999943
No 56
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=91.30 E-value=0.11 Score=50.99 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.0
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
+.|=|++||||||||+.|-+.+
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~ 23 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHL 23 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999999998764
No 57
>PRK05439 pantothenate kinase; Provisional
Probab=91.20 E-value=0.42 Score=53.08 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=27.5
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLM 814 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLm 814 (1112)
-+||..-|-|||||||||+.|....+..+.+..|.++-
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 37888999999999999999877554443333455443
No 58
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=91.06 E-value=1.4 Score=51.02 Aligned_cols=37 Identities=30% Similarity=0.315 Sum_probs=26.5
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
++-+=|-||||||.||+.|-+..|-- ++.+-.|++..
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~----~i~vsa~eL~s 186 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIE----PIVMSAGELES 186 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCC----eEEEEHHHhhc
Confidence 44445889999999999998876542 66655565553
No 59
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.06 E-value=0.22 Score=50.73 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=24.7
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+...|.++.+-|.||||||+|++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4468899999999999999999999765
No 60
>PRK13974 thymidylate kinase; Provisional
Probab=91.03 E-value=0.18 Score=51.39 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=23.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.|.++.|-|++||||||+|+.|.+...
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999876543
No 61
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.89 E-value=0.12 Score=51.75 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=20.9
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
||.+-|.||||||+||+.|....+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4677899999999999999776553
No 62
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=90.77 E-value=0.11 Score=47.79 Aligned_cols=75 Identities=20% Similarity=0.289 Sum_probs=40.5
Q ss_pred EEccCCCCchhhHHHHHHHhcCCC-CCCCcceecccccccCccchHHHHHHhhcCCceEEEecC-CCCC----hhHHHHH
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGG-LGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADK-NAPN----EEVWRQI 853 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg-~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADK-NaP~----~~vWr~I 853 (1112)
|++=|=||||||.||+.|.+.... ++...+-.+.. .....+||.-.. +. .|++.|- ..-+ .+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~-~~~~~~~w~gY~-----~q-~vvi~DD~~~~~~~~~~~~~~~l 73 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYT-RNPGDKFWDGYQ-----GQ-PVVIIDDFGQDNDGYNYSDESEL 73 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEe-CCCccchhhccC-----CC-cEEEEeecCccccccchHHHHHH
Confidence 567799999999999986554332 12211111111 344568996554 22 3444442 2211 2356666
Q ss_pred HHHhccCC
Q 046016 854 EDMCRRTR 861 (1112)
Q Consensus 854 edmC~~t~ 861 (1112)
-.||.+..
T Consensus 74 ~~l~s~~~ 81 (107)
T PF00910_consen 74 IRLISSNP 81 (107)
T ss_pred HHHHhcCC
Confidence 67765543
No 63
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=90.70 E-value=0.14 Score=57.39 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=27.9
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC-CCCCCcceecccccc
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG-GLGDNRPIHTLMGDL 817 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg-g~g~~rpv~sLmGD~ 817 (1112)
|.+|-|+||||||||++.|..... ..|. .|.++-+|-
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~--~v~~~~~Dd 38 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGW--AVAVITYDD 38 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCC--eEEEEcccc
Confidence 467899999999999999876654 3444 677776654
No 64
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=90.66 E-value=0.15 Score=49.17 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=19.9
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+|+-|.||||||++++.|-+..|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367789999999999999966553
No 65
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=90.65 E-value=0.17 Score=48.51 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=25.5
Q ss_pred EccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCcc
Q 046016 781 FFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGK 821 (1112)
Q Consensus 781 FFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGr 821 (1112)
++-|.||||||||++.|.+..| .-.+.+|-+..+
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l~-------~~~v~~D~~~~~ 35 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRLG-------AKFIEGDDLHPA 35 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhcC-------CeEEeCccccCh
Confidence 4569999999999999987764 223567776544
No 66
>PRK07667 uridine kinase; Provisional
Probab=90.54 E-value=0.21 Score=50.25 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=30.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDL 817 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~ 817 (1112)
..+||.+=|.||||||+||+.|.......|. ++.++--|-
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~--~~~~i~~Dd 55 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGI--PFHIFHIDD 55 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCC--cEEEEEcCc
Confidence 3479999999999999999998776654433 666665554
No 67
>PRK13947 shikimate kinase; Provisional
Probab=90.24 E-value=0.18 Score=48.42 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.3
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
+++-|.||||||++++.|-+..
T Consensus 4 I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5778999999999999997664
No 68
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.13 E-value=0.17 Score=45.92 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=17.2
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+-++++-|-||||||++|+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHH
Confidence 34678889999999999999866
No 69
>PF05729 NACHT: NACHT domain
Probab=90.13 E-value=0.21 Score=46.23 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=19.3
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+++.-|-||||||+||+.+.....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 466779999999999999866443
No 70
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=90.02 E-value=0.4 Score=41.34 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.4
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
+++-|-||||||++++.|.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5667999999999999998876
No 71
>PRK14526 adenylate kinase; Provisional
Probab=89.81 E-value=0.18 Score=52.46 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=26.5
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
+++-|.|||||||+|+.|....| ..|+-+||+++
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~------~~~is~G~llr 36 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN------YYHISTGDLFR 36 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC------CceeecChHHH
Confidence 56789999999999999975543 34566888875
No 72
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=89.60 E-value=0.21 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
+++-|.||||||+|.+.|-...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5678999999999999997655
No 73
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.51 E-value=0.19 Score=50.09 Aligned_cols=19 Identities=47% Similarity=0.777 Sum_probs=16.7
Q ss_pred cCCCCchhhHHHHHHHhcC
Q 046016 783 PGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 783 PgIPGcaKSaLCkei~~~p 801 (1112)
=|.||||||++++++++.-
T Consensus 4 ~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 4 HGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred EcCCCCCHHHHHHHHHHhc
Confidence 4899999999999988774
No 74
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=89.31 E-value=0.76 Score=50.49 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=19.9
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
.||-+-|-+||||||||+.|....
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 588899999999999998764433
No 75
>PRK14737 gmk guanylate kinase; Provisional
Probab=89.26 E-value=0.4 Score=48.73 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=27.4
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCCCC
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGGLG 805 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g 805 (1112)
|++|.++.+-|-+|||||+|++.|++...++.
T Consensus 1 ~~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~ 32 (186)
T PRK14737 1 KASPKLFIISSVAGGGKSTIIQALLEEHPDFL 32 (186)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 57899999999999999999999988644443
No 76
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=89.24 E-value=0.31 Score=48.99 Aligned_cols=42 Identities=29% Similarity=0.510 Sum_probs=28.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG 820 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG 820 (1112)
..=.++|+-|-||||||++...++...+ +. -+-.+.+|.++.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~--~~v~i~~D~~r~ 54 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GG--GIVVIDADEFRQ 54 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT---SEEE-GGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CC--CeEEEehHHHHH
Confidence 4457889999999999999999887664 21 234567888773
No 77
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=89.21 E-value=0.33 Score=47.00 Aligned_cols=28 Identities=39% Similarity=0.640 Sum_probs=23.5
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGL 804 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~ 804 (1112)
|-++.+-|-+|||||||++.|.+.-.+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~ 28 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNL 28 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccc
Confidence 5688999999999999999998854443
No 78
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=89.02 E-value=0.34 Score=47.16 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=23.2
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGL 804 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~ 804 (1112)
|-++.+-|-||||||+|.+.|....+..
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~ 28 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD 28 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC
Confidence 4578889999999999999987765543
No 79
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.01 E-value=0.28 Score=46.60 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
++|.+-|.||||||++|+.|.+..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 478888999999999999997765
No 80
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=89.00 E-value=3.9 Score=44.06 Aligned_cols=124 Identities=23% Similarity=0.284 Sum_probs=67.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC-CCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCC------CCCh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG-GLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKN------APNE 847 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg-g~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKN------aP~~ 847 (1112)
..++-+.|.|+|++|||+|.+-|.+.-. ..|+ .| |- +++ ||.+.- ...+.|.|-= ...+
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~-----g~-T~~--~~~~~~-----~~~~~l~DtPGi~~~~~~~~ 184 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RP-----GV-TKA--QQWIKL-----GKGLELLDTPGILWPKLEDQ 184 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCC-CC-----Ce-EEE--EEEEEe-----CCcEEEEECCCcCCCCCCcH
Confidence 3467788999999999999999865321 1111 11 21 222 221111 1236677742 2223
Q ss_pred hHHHHHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhc-CCchhh
Q 046016 848 EVWRQIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYE-GKSRKE 926 (1112)
Q Consensus 848 ~vWr~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~-~k~r~e 926 (1112)
++...+. +|+. ....-+..+.+|..++..|.|.++ .-+...|++=. ..+-.|
T Consensus 185 ~~~~~l~-~~~~--------------i~~~~~~~~~~~~~ll~~l~~~~~------------~~l~~~y~~~~~~~~~~~ 237 (287)
T PRK09563 185 EVGLKLA-LTGA--------------IKDEALDLEEVAIFALEYLSKHYP------------ERLKERYKLDELPEDILE 237 (287)
T ss_pred HHHHHHH-HhCC--------------cchhhcChHHHHHHHHHHHHhhCH------------HHHHHHhCCCCCCCCHHH
Confidence 3222221 3331 122234466777777777766542 22455666510 137788
Q ss_pred hHHHHHHHhcCcE
Q 046016 927 FDGELVERFGSLI 939 (1112)
Q Consensus 927 f~seL~~rF~~lV 939 (1112)
|++.+-.+.|.+.
T Consensus 238 ~l~~~a~~~g~~~ 250 (287)
T PRK09563 238 LLEAIARKRGALR 250 (287)
T ss_pred HHHHHHHHhCccc
Confidence 9999998888754
No 81
>PLN02459 probable adenylate kinase
Probab=88.92 E-value=0.24 Score=53.90 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=30.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG 820 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG 820 (1112)
+..+.++|-|-|||||||+|+.|.+..| -+|+-+||+++-
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~------~~~is~gdllR~ 66 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLLG------VPHIATGDLVRE 66 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHhC------CcEEeCcHHHHH
Confidence 3445566679999999999999977653 467888998863
No 82
>PRK01184 hypothetical protein; Provisional
Probab=88.89 E-value=0.28 Score=48.09 Aligned_cols=36 Identities=28% Similarity=0.609 Sum_probs=25.1
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG 820 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG 820 (1112)
.+|+.-|.|||||||+|+ +.+..| + |+.+. ||.++-
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g-~----~~i~~-~d~lr~ 37 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMG-I----PVVVM-GDVIRE 37 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcC-C----cEEEh-hHHHHH
Confidence 378889999999999998 444432 2 44333 887754
No 83
>PRK06696 uridine kinase; Validated
Probab=88.83 E-value=0.26 Score=50.52 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=30.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecc-cccccC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTL-MGDLTK 819 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sL-mGD~iK 819 (1112)
..-+||-.-|.||||||||++.|....+..|. ++.++ |-|-.+
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~--~v~~~~~Ddf~~ 63 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGR--PVIRASIDDFHN 63 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEeccccccC
Confidence 34578899999999999999999876654342 55443 444443
No 84
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=88.78 E-value=1.8 Score=47.81 Aligned_cols=117 Identities=14% Similarity=0.128 Sum_probs=64.6
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCC-----CCCcceeccc--c------c---ccCccchHHHHHHhhcCCceEEEe
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGL-----GDNRPIHTLM--G------D---LTKGKYWQKVADERRRKPYSVMLA 840 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~-----g~~rpv~sLm--G------D---~iKGrYWqkVa~eR~kkp~si~lA 840 (1112)
+-.|.+-|.||||||+|++.|...-+-- |.. -+.... + | .+.|-|=. .++|.+..-.|++.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~-~~~~~~~~~~~l~~~d~~~i~~g~~~~--~~~~~~~a~~iif~ 238 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYARE-YVEEKLGGDEALQYSDYAQIALGQQRY--IDYAVRHAHKIAFI 238 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHH-HHHHhcCCCcccCHHHHHHHHHHHHHH--HHHHHhhcCCeEEE
Confidence 5578889999999999999986642210 100 000001 1 1 12232211 13444555579999
Q ss_pred cCCCCChhHHHH---------HHHHhccCCcccc----cccc-CCCCCCCCcC--chHHHHHHHHHHhhccC
Q 046016 841 DKNAPNEEVWRQ---------IEDMCRRTRASAV----PVVP-DSGGTESNPF--SLDALAVFMFRVLERVN 896 (1112)
Q Consensus 841 DKNaP~~~vWr~---------IedmC~~t~A~~V----PVvp-dseGt~~~PF--SLd~LAvfm~RvL~R~n 896 (1112)
|-+++.--+|-. +...|...+-..| |-+| ...|.++.|| .-...--.|.+.|++-+
T Consensus 239 D~~~~~t~~y~~~~~~~~~~~~~~~~~~~~ydl~~l~~p~~~~~~D~~R~~~~~~~R~~~~~ll~~~l~~~G 310 (325)
T TIGR01526 239 DTDFITTQVFAKQYEGREHPFLDSDIAEYPFDLTLLLKPNTEWVDDGLRSLGSQKQRQEFQQLLKKLLDEYG 310 (325)
T ss_pred cCChHHHHHHHHHHcCCCCHHHHHHHHhcCCCEEEECCCCCCCccCCcccCchHHHHHHHHHHHHHHHHHcC
Confidence 999876555543 4445554433333 2222 1236788888 44455556777777753
No 85
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=88.55 E-value=0.31 Score=48.37 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.7
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
||.+-|.+|||||||++.|...-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46778999999999999997764
No 86
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=88.53 E-value=0.55 Score=42.95 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=52.5
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHhcc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMCRR 859 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC~~ 859 (1112)
|.+-|-||||||+|++.+++.. --+..+|. .+|.....| .-..+.+.+.+.| .|..+.+..+...+-.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~-~~~~~~~~---~~~~~~~~~------~~~~~~~~~~l~D--~~g~~~~~~~~~~~~~ 69 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGT-FVEEYDPT---IEDSYRKTI------VVDGETYTLDILD--TAGQEEFSAMRDLYIR 69 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCC-CCcCcCCC---hhHeEEEEE------EECCEEEEEEEEE--CCChHHHHHHHHHHHh
Confidence 3567999999999999997543 11111111 112211111 0011246677777 4555556665555444
Q ss_pred CCccccccccCCCCCCCCcCchHHHHHHHHHHhhcc
Q 046016 860 TRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERV 895 (1112)
Q Consensus 860 t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~ 895 (1112)
.....|-|+ |. ++|-|++.+.-++..+++..
T Consensus 70 ~~~~~i~v~-d~----~~~~s~~~~~~~~~~~~~~~ 100 (160)
T cd00876 70 QGDGFILVY-SI----TDRESFEEIKGYREQILRVK 100 (160)
T ss_pred cCCEEEEEE-EC----CCHHHHHHHHHHHHHHHHhc
Confidence 333344444 32 34667777777766666554
No 87
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=88.50 E-value=0.25 Score=46.05 Aligned_cols=121 Identities=26% Similarity=0.443 Sum_probs=61.6
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecc--ccccc----CccchHHHHHHhh-----------cCCceEEEecC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTL--MGDLT----KGKYWQKVADERR-----------RKPYSVMLADK 842 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sL--mGD~i----KGrYWqkVa~eR~-----------kkp~si~lADK 842 (1112)
|++-|=||||||+|+++|.... +.+++.. ..|+. -|.|... .... +++.-|.|=|=
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~--~~~~~~~~~~l~~a~~~~~il~lDEi 74 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPS--NGQFEFKDGPLVRAMRKGGILVLDEI 74 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET---TTTTCEEE-CCCTTHHEEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeec--ccccccccccccccccceeEEEECCc
Confidence 4667999999999999987766 2244422 22222 2555543 1111 13334444455
Q ss_pred CCCChhHHHHHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCC
Q 046016 843 NAPNEEVWRQIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGK 922 (1112)
Q Consensus 843 NaP~~~vWr~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k 922 (1112)
|..+.+++..|-++.....-. +|+..+....+ +. |.. +.++.+++-.+-++ +
T Consensus 75 n~a~~~v~~~L~~ll~~~~~~----~~~~~~~~~~~------------------~~---~~~--~~~~~ii~t~N~~~-~ 126 (139)
T PF07728_consen 75 NRAPPEVLESLLSLLEERRIQ----LPEGGEEIKEP------------------NN---DLA--SPNFRIIATMNPRD-K 126 (139)
T ss_dssp GG--HHHHHTTHHHHSSSEEE----E-TSSSEEE--------------------TT-----------EEEEEEESSST--
T ss_pred ccCCHHHHHHHHHHHhhCccc----ccCCCcEEecC------------------cc---ccc--ccceEEEEEEcCCC-C
Confidence 766788888888877654322 22222211100 00 000 01555555566555 7
Q ss_pred chhhhHHHHHHHh
Q 046016 923 SRKEFDGELVERF 935 (1112)
Q Consensus 923 ~r~ef~seL~~rF 935 (1112)
.+.++..+|.+||
T Consensus 127 ~~~~l~~al~~Rf 139 (139)
T PF07728_consen 127 GRKELSPALLDRF 139 (139)
T ss_dssp -TTTTCHHHHTT-
T ss_pred CcCcCCHHHHhhC
Confidence 7778888888887
No 88
>PRK02496 adk adenylate kinase; Provisional
Probab=88.45 E-value=0.28 Score=48.12 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=25.8
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
+++-|-||||||++|+.|.+..| -.|..+||.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~------~~~i~~~~~~ 36 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLH------IPHISTGDIL 36 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC------CcEEEhHHHH
Confidence 56679999999999999976543 2466778876
No 89
>PRK07261 topology modulation protein; Provisional
Probab=88.38 E-value=0.3 Score=48.59 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.4
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
+++-|.||||||||++.|...
T Consensus 3 i~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 677899999999999998654
No 90
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=88.33 E-value=0.32 Score=54.24 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=30.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDL 817 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~ 817 (1112)
....+|-+-|-|||||||||+.+.......|. .|-++..|.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~--~v~vi~~Dp 94 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGH--KVAVLAVDP 94 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCC--eEEEEEeCC
Confidence 45678999999999999999998766554433 566555554
No 91
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=88.28 E-value=0.34 Score=57.24 Aligned_cols=44 Identities=34% Similarity=0.672 Sum_probs=34.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
..|.+++|-|.||||||||++.|....+-. ..+++..|-||.++
T Consensus 390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~-~g~~~~~lD~D~vr 433 (568)
T PRK05537 390 KQGFTVFFTGLSGAGKSTIAKALMVKLMEM-RGRPVTLLDGDVVR 433 (568)
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHhhhc-cCceEEEeCCcHHH
Confidence 567788899999999999999997766541 23478888999773
No 92
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=88.18 E-value=0.31 Score=51.64 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=37.2
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
-+..|.+|.|-|.+|+|||||...+.+..-..|. -+.+|-||-++
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~--~~y~LDGDnvR 63 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGY--HVYLLDGDNVR 63 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCC--eEEEecChhHh
Confidence 4567899999999999999999988776655554 57889999886
No 93
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=88.16 E-value=0.26 Score=49.85 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=26.5
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
+++-|-||||||++|+.|-+..| -.|+-+||+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g------~~~is~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG------LPHISTGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC------CCeeehhHHHH
Confidence 45678999999999999976553 35677888874
No 94
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=88.13 E-value=0.49 Score=46.07 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=40.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIED 855 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~Ied 855 (1112)
+|=++.|.|-||+|||++|-+|... .+.|+..-| +...++..|++.+-.-+.+++.+.+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~-----------~~~g~~~~g--------~~~~~~~~Vl~i~~E~~~~~~~~rl~~ 91 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAA-----------LATGRPFLG--------ELPPRPGRVLYISLEDSESQIARRLRA 91 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHH-----------HHT---TT-----------------EEEEESSS-HHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-----------HHhCCccCC--------cccccCceEEEEeccCCHHHHHHHHHH
Confidence 4557889999999999999998432 223333333 222366788888888888889988888
Q ss_pred Hhcc
Q 046016 856 MCRR 859 (1112)
Q Consensus 856 mC~~ 859 (1112)
+...
T Consensus 92 ~~~~ 95 (193)
T PF13481_consen 92 LLQD 95 (193)
T ss_dssp HHTT
T ss_pred Hhcc
Confidence 8743
No 95
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=88.04 E-value=1.1 Score=47.57 Aligned_cols=107 Identities=20% Similarity=0.355 Sum_probs=58.0
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCC---CCCCcceeccccc----cc---CccchHHHHHHhh-----cCCceEE
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGG---LGDNRPIHTLMGD----LT---KGKYWQKVADERR-----RKPYSVM 838 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg---~g~~rpv~sLmGD----~i---KGrYWqkVa~eR~-----kkp~si~ 838 (1112)
+.+ ..++|=|-||+|||+|++.+ |+. +.-+.-.+.|-|+ .+ ..+=|+.+.+.=. ..++.++
T Consensus 10 ~~~-~~~liyG~~G~GKtt~a~~~---~~~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtV 85 (220)
T TIGR01618 10 RIP-NMYLIYGKPGTGKTSTIKYL---PGKTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNI 85 (220)
T ss_pred CCC-cEEEEECCCCCCHHHHHHhc---CCCCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEE
Confidence 344 44888999999999999988 432 1222223344332 23 2455776655332 3567888
Q ss_pred EecCCCCChhHHHHHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCC
Q 046016 839 LADKNAPNEEVWRQIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNH 897 (1112)
Q Consensus 839 lADKNaP~~~vWr~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH 897 (1112)
+.|-=---+..| ++.+|+.+. +.+| ++.-...+.--|.+.|.+..|
T Consensus 86 VIDsI~~l~~~~--~~~~~r~~k-~~~~----------~~~~yg~~~~~fl~~l~~L~~ 131 (220)
T TIGR01618 86 VIDNISALQNLW--LENIGRAAK-NGQP----------ELQHYQKLDLWFLDLLTVLKE 131 (220)
T ss_pred EEecHHHHHHHH--HHHHhhhcC-CCCc----------ccccHHHHHHHHHHHHHHHHh
Confidence 887422222222 444454433 3333 222244466667777777654
No 96
>PF12846 AAA_10: AAA-like domain
Probab=87.95 E-value=1.7 Score=44.09 Aligned_cols=25 Identities=28% Similarity=0.309 Sum_probs=19.2
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGL 804 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~ 804 (1112)
+++-|.+|+|||++++.++...-..
T Consensus 4 ~~i~G~tGsGKT~~~~~l~~~~~~~ 28 (304)
T PF12846_consen 4 TLILGKTGSGKTTLLKNLLEQLIRR 28 (304)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc
Confidence 3567999999999999886543333
No 97
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=87.92 E-value=2.8 Score=43.01 Aligned_cols=28 Identities=32% Similarity=0.573 Sum_probs=21.7
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
++.+|++ .+-|-||||||+||+.+.+..
T Consensus 40 ~~~~~~~-~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 40 SQREGFI-LITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred hcCCCEE-EEEcCCCCCHHHHHHHHHHhc
Confidence 4445554 568999999999999998753
No 98
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=87.91 E-value=0.29 Score=52.77 Aligned_cols=127 Identities=17% Similarity=0.284 Sum_probs=81.9
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc--------------CccchHHHHHHhh-------------
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT--------------KGKYWQKVADERR------------- 831 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i--------------KGrYWqkVa~eR~------------- 831 (1112)
+|-.-|||-+|||++|.+|+.+...+--.+-+|.+--|-. +|||.-+|..-=.
T Consensus 3 LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~~~~iEk~ISaiqedtdwppqvr 82 (291)
T KOG4622|consen 3 LLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRFECHIEKCISAIQEDTDWPPQVR 82 (291)
T ss_pred eeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchHHHHHHHHHHHHhcccCCCchhe
Confidence 5667799999999999999988888754444555544332 4777666543211
Q ss_pred --------cCCceEEEecCCCCChhHHHHHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCC
Q 046016 832 --------RKPYSVMLADKNAPNEEVWRQIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDK 903 (1112)
Q Consensus 832 --------kkp~si~lADKNaP~~~vWr~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDk 903 (1112)
....-|+|.|.|-=-.+.---+..+|+..+-. |-.=+||+-+--.|||-+|--...|
T Consensus 83 risssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~Gci---------------FG~Iflas~ide~LqaNS~Rsda~k 147 (291)
T KOG4622|consen 83 RISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCI---------------FGIIFLASGIDEALQANSHRSDAEK 147 (291)
T ss_pred eccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCe---------------eeeeehhhhHHHHHHhccccccchh
Confidence 01245778887765555555567777765433 5567889999999999999743332
Q ss_pred CCCCchhHHHHHHHhhcCC
Q 046016 904 NSPNAGYVLLMFYHLYEGK 922 (1112)
Q Consensus 904 ssp~Ag~VllMFy~LY~~k 922 (1112)
- .--+|--||-.|-+--
T Consensus 148 ~--~~dtiRki~EklE~PD 164 (291)
T KOG4622|consen 148 Q--KNDTIRKIFEKLEDPD 164 (291)
T ss_pred C--ccHHHHHHHHhccCcc
Confidence 2 2235666666654433
No 99
>PRK06217 hypothetical protein; Validated
Probab=87.88 E-value=0.39 Score=47.59 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.8
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+++-|-|||||||||+.|-+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47788999999999999997654
No 100
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=87.82 E-value=0.33 Score=50.00 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=19.4
Q ss_pred EEccCCCCchhhHHHHHHHhcCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pg 802 (1112)
|..-|.||||||+||+.|.+..+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 44569999999999999988754
No 101
>CHL00195 ycf46 Ycf46; Provisional
Probab=87.53 E-value=0.59 Score=54.60 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=23.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTL 813 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sL 813 (1112)
..|+|++ |-||||||.|||.|-+.. +.|+..+
T Consensus 259 pkGILL~--GPpGTGKTllAkaiA~e~-----~~~~~~l 290 (489)
T CHL00195 259 PRGLLLV--GIQGTGKSLTAKAIANDW-----QLPLLRL 290 (489)
T ss_pred CceEEEE--CCCCCcHHHHHHHHHHHh-----CCCEEEE
Confidence 4577766 999999999999996543 2366555
No 102
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=87.51 E-value=0.34 Score=52.17 Aligned_cols=36 Identities=11% Similarity=0.258 Sum_probs=29.5
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
+|+..-|.||||||+.++.+... |. |++.-|||-||
T Consensus 1 miI~i~G~~gsGKstva~~~~~~----g~--~~~~~~~d~ik 36 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN----YN--AVKYQLADPIK 36 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc----CC--cEEEehhHHHH
Confidence 47888999999999999998542 22 77788999998
No 103
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=87.44 E-value=0.35 Score=52.26 Aligned_cols=103 Identities=18% Similarity=0.205 Sum_probs=50.4
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccc---cCccch-----HHH------HHHhhcCCceEEEecCCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDL---TKGKYW-----QKV------ADERRRKPYSVMLADKNA 844 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~---iKGrYW-----qkV------a~eR~kkp~si~lADKNa 844 (1112)
||.+-|+||||||++|++|.+....-+. .|++.--|. -+.-|| ... +-+|.=..-.|+|+|-|-
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~--~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~n 80 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGK--EVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNN 80 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT----EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S--
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCC--EEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCc
Confidence 5667799999999999999886555333 343322111 122344 211 112221334788999887
Q ss_pred CChhHHH---HHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCC
Q 046016 845 PNEEVWR---QIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNH 897 (1112)
Q Consensus 845 P~~~vWr---~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH 897 (1112)
=-..-=. +++.-++++....---.| +..|.-|=-+|..-
T Consensus 81 YiKg~RYelyclAr~~~~~~c~i~~~~~--------------~e~~~~~N~~R~~~ 122 (270)
T PF08433_consen 81 YIKGMRYELYCLARAYGTTFCVIYCDCP--------------LETCLQRNSKRPEP 122 (270)
T ss_dssp -SHHHHHHHHHHHHHTT-EEEEEEEE----------------HHHHHHHHHHTT-S
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEEECCC--------------HHHHHHhhhccCCC
Confidence 5554222 255555666554322222 77888888777643
No 104
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.33 E-value=0.43 Score=47.40 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.2
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
|-++++-|-+|||||||.+.|...
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 568899999999999999999554
No 105
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=86.68 E-value=0.49 Score=47.57 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=26.9
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
+|=++.+-|.+|||||||++.|....+. ..+.||.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-------~~i~gd~~ 37 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-------KFIDGDDL 37 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-------EEECCccc
Confidence 3567888999999999999998665432 24567655
No 106
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=86.67 E-value=0.64 Score=46.75 Aligned_cols=52 Identities=15% Similarity=0.311 Sum_probs=33.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADE 829 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~e 829 (1112)
.|-++.+-|-||||||+||..+...-... +.+|-.+.+|......|+.++.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~~~~~~~~~~ 69 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSSERFRQIAGD 69 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHhH
Confidence 47788899999999999999976433222 33555554443333556665544
No 107
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=86.48 E-value=0.98 Score=54.33 Aligned_cols=60 Identities=22% Similarity=0.447 Sum_probs=38.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccc-------hHHHHHHhhcCCceEEEec
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKY-------WQKVADERRRKPYSVMLAD 841 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrY-------WqkVa~eR~kkp~si~lAD 841 (1112)
..|+|+| |-||||||+|++.|-+..+ .++..+.|..+-++| ..++-+..++...+|++.|
T Consensus 487 ~~giLL~--GppGtGKT~lakalA~e~~-----~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiD 553 (733)
T TIGR01243 487 PKGVLLF--GPPGTGKTLLAKAVATESG-----ANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFD 553 (733)
T ss_pred CceEEEE--CCCCCCHHHHHHHHHHhcC-----CCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3566555 9999999999999966543 256666555544444 4445444445555677766
No 108
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=86.48 E-value=1.3 Score=51.87 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=27.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccc
Q 046016 667 QMNIWGTSAVKQRQLSKMLDEWAVYIRRKYGNKQLSSSVYLT 708 (1112)
Q Consensus 667 qmk~WGtSa~kq~el~~~ldeWA~yir~k~g~k~L~ss~YLs 708 (1112)
.+..-|++..+..+ -+|+|-.|-++-|--=+|+.. +|+
T Consensus 138 ~~~~~~~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~-~L~ 175 (460)
T PLN03046 138 LVDKIGYTPEKIAQ---SIDKWLLYGSQLCRLFQLNEL-KLT 175 (460)
T ss_pred cchhccCCHHHHHH---HHHHHHHHHHHHHHHhccccc-cCC
Confidence 45677899888877 689999988877765566654 443
No 109
>PRK13949 shikimate kinase; Provisional
Probab=86.13 E-value=0.48 Score=47.22 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEccCCCCchhhHHHHHHHhcCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+|+-|.||||||+|++.|-+..+
T Consensus 4 I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999866553
No 110
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=86.04 E-value=0.5 Score=49.12 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=18.9
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
||-+-|-+||||||||+.|...-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 35567999999999999987654
No 111
>PRK13948 shikimate kinase; Provisional
Probab=85.79 E-value=0.56 Score=48.00 Aligned_cols=27 Identities=30% Similarity=0.160 Sum_probs=22.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
++-.+++-|.||||||++.+.|-+..|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 556778999999999999999976543
No 112
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.77 E-value=0.98 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.688 Sum_probs=19.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.|++++ |-||||||+|++.|.+..
T Consensus 180 kgvLL~--GppGTGKT~LAkalA~~l 203 (398)
T PTZ00454 180 RGVLLY--GPPGTGKTMLAKAVAHHT 203 (398)
T ss_pred ceEEEE--CCCCCCHHHHHHHHHHhc
Confidence 455554 999999999999997653
No 113
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=85.70 E-value=0.49 Score=42.87 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=18.2
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|.+-|-||+|||+|++.|.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 457799999999999999863
No 114
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=85.69 E-value=0.89 Score=44.69 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=16.9
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
+-|-|-+|||||+||+.+...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 345699999999999887654
No 115
>PRK06761 hypothetical protein; Provisional
Probab=85.67 E-value=0.6 Score=51.24 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.4
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGLG 805 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~g 805 (1112)
+.+++|-|.||||||||++.|.+.....|
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g 31 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNG 31 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCc
Confidence 45889999999999999999988766444
No 116
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=85.65 E-value=0.53 Score=46.87 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.3
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+++-|.||||||+|++.|.+..
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc
Confidence 47889999999999999997664
No 117
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=85.57 E-value=2.4 Score=39.45 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=18.5
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|.+-|-||||||+|++.+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 4567999999999999997654
No 118
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=85.47 E-value=0.6 Score=44.40 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=17.7
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
....+-++++-|-||||||+|+++++..
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4455678899999999999999987653
No 119
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=85.37 E-value=0.62 Score=46.18 Aligned_cols=28 Identities=36% Similarity=0.567 Sum_probs=24.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+|.++++-|=.|||||+|+|.|.+..|
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4677899999999999999999988765
No 120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=85.36 E-value=0.51 Score=43.05 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=17.4
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
+.+-|-||||||+||+.|....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 3456889999999999985543
No 121
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=85.35 E-value=2 Score=40.50 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.2
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGD 806 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~ 806 (1112)
|-+.|-||||||+|++.|.+.+...+.
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~~~~~ 28 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTGDIER 28 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCc
Confidence 345699999999999999888777654
No 122
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=85.30 E-value=0.24 Score=47.25 Aligned_cols=51 Identities=29% Similarity=0.475 Sum_probs=37.7
Q ss_pred CCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHhccCC
Q 046016 784 GIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMCRRTR 861 (1112)
Q Consensus 784 gIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC~~t~ 861 (1112)
|=||+||+++|+-|.+..| -+|+-+||+++- +-+. ..+.|++|+++-....
T Consensus 3 G~PgsGK~t~~~~la~~~~------~~~is~~~llr~--------~~~~-------------~s~~g~~i~~~l~~g~ 53 (151)
T PF00406_consen 3 GPPGSGKGTQAKRLAKRYG------LVHISVGDLLRE--------EIKS-------------DSELGKQIQEYLDNGE 53 (151)
T ss_dssp ESTTSSHHHHHHHHHHHHT------SEEEEHHHHHHH--------HHHT-------------TSHHHHHHHHHHHTTS
T ss_pred CCCCCChHHHHHHHHHhcC------cceechHHHHHH--------HHhh-------------hhHHHHHHHHHHHhhc
Confidence 7799999999999988762 479999999853 1111 1366888888876654
No 123
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=85.29 E-value=1.7 Score=39.61 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.3
Q ss_pred ccCCCCchhhHHHHHHHhc
Q 046016 782 FPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 782 FPgIPGcaKSaLCkei~~~ 800 (1112)
+-|-||+|||+|++-|.+.
T Consensus 2 l~G~~~~GKssl~~~l~~~ 20 (157)
T cd01894 2 IVGRPNVGKSTLFNRLTGR 20 (157)
T ss_pred ccCCCCCCHHHHHHHHhCC
Confidence 4589999999999999754
No 124
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=85.25 E-value=0.76 Score=41.49 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=19.1
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+.+-+.|-||+||||||+.+...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 34667899999999999999754
No 125
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=85.23 E-value=0.49 Score=55.93 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=33.9
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG 820 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG 820 (1112)
.+.++++-|.|||||||++++|.......| ..+..+.||.++-
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~--~~~~~l~~D~~r~ 501 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALG--RHTYLLDGDNVRH 501 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcC--CCEEEEcChhhhh
Confidence 478889999999999999999987654322 3677888998753
No 126
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=85.15 E-value=2.3 Score=39.80 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=17.2
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|.|.|-||||||+|.+-+...
T Consensus 2 i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhh
Confidence 356799999999998887653
No 127
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=84.85 E-value=0.51 Score=46.63 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=21.2
Q ss_pred CCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 784 GIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 784 gIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
|.||||||||++.|....|. ..+.||.+
T Consensus 2 G~sGsGKSTla~~la~~l~~-------~~~~~d~~ 29 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQLHA-------AFLDGDFL 29 (163)
T ss_pred CCCCCcHHHHHHHHHHHhCC-------eEEeCccC
Confidence 88999999999999776642 24566654
No 128
>PRK13946 shikimate kinase; Provisional
Probab=84.80 E-value=0.64 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=21.5
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pg 802 (1112)
..+++-|.||||||++.+.|-+..|
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3688999999999999999977663
No 129
>PLN02674 adenylate kinase
Probab=84.77 E-value=0.47 Score=50.98 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=30.0
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
..+++-|-|||||+|+|+-|-+..| -+|+-+||+++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~------~~his~GdllR 67 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYC------LCHLATGDMLR 67 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC------CcEEchhHHHH
Confidence 4577889999999999999976553 47888999986
No 130
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=84.48 E-value=2.4 Score=44.56 Aligned_cols=126 Identities=21% Similarity=0.273 Sum_probs=64.6
Q ss_pred EccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhc-------------CCceEEEecCCCC--
Q 046016 781 FFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRR-------------KPYSVMLADKNAP-- 845 (1112)
Q Consensus 781 FFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~k-------------kp~si~lADKNaP-- 845 (1112)
-+-|-+|||||+|+.-|+...|..-. .-.+-.|+++-- | ...||.+ +...|.+.|----
T Consensus 3 ~i~G~~~~GKTtL~~~ll~~~g~i~~--~g~v~~~~~~~D-~---~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~ 76 (237)
T cd04168 3 GILAHVDAGKTTLTESLLYTSGAIRK--LGSVDKGTTRTD-T---MELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD 76 (237)
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCccc--cccccCCcccCC-C---chhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc
Confidence 35689999999999999987766422 000111221111 1 1223332 2345566664110
Q ss_pred -ChhHHHHHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCC--
Q 046016 846 -NEEVWRQIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGK-- 922 (1112)
Q Consensus 846 -~~~vWr~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k-- 922 (1112)
..++++.+. .--.+|-||.-+.|. ..-...+++.+++.+= | ++.|.+=.|..
T Consensus 77 f~~~~~~~l~-----~aD~~IlVvd~~~g~-------~~~~~~~~~~~~~~~~--------P-----~iivvNK~D~~~a 131 (237)
T cd04168 77 FIAEVERSLS-----VLDGAILVISAVEGV-------QAQTRILWRLLRKLNI--------P-----TIIFVNKIDRAGA 131 (237)
T ss_pred hHHHHHHHHH-----HhCeEEEEEeCCCCC-------CHHHHHHHHHHHHcCC--------C-----EEEEEECccccCC
Confidence 122233222 122456777766663 2233445666665322 2 12245555533
Q ss_pred chhhhHHHHHHHhcC
Q 046016 923 SRKEFDGELVERFGS 937 (1112)
Q Consensus 923 ~r~ef~seL~~rF~~ 937 (1112)
+..+..++|.++|+.
T Consensus 132 ~~~~~~~~i~~~~~~ 146 (237)
T cd04168 132 DLEKVYQEIKEKLSS 146 (237)
T ss_pred CHHHHHHHHHHHHCC
Confidence 356788899999985
No 131
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=84.46 E-value=1.4 Score=53.74 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=21.5
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
|-++.|-|-||||||+|++.|-+..+
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhc
Confidence 34678899999999999999977653
No 132
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=84.37 E-value=1.1 Score=54.90 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=22.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
..|-++.|-|-||||||+|++-|.+.
T Consensus 347 ~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 347 IKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35668889999999999999988664
No 133
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=84.26 E-value=3.8 Score=42.54 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|.+|-+.|.||+|||+|++.|+..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45677778899999999999998654
No 134
>PRK06547 hypothetical protein; Provisional
Probab=84.16 E-value=0.83 Score=46.16 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=23.6
Q ss_pred ccCCCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 772 VQKDEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 772 v~k~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
|....=.+|.+-|-+|||||+|++.|.+..
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344555677777999999999999998763
No 135
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.53 E-value=3.9 Score=46.82 Aligned_cols=123 Identities=24% Similarity=0.446 Sum_probs=66.8
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC---c---cchHHHHHHhhcCCceEEEecCCCCChhHH
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK---G---KYWQKVADERRRKPYSVMLADKNAPNEEVW 850 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK---G---rYWqkVa~eR~kkp~si~lADKNaP~~~vW 850 (1112)
|.|+| |-||.|||-|.|.+-+--+ .-+..+--.|++. | |-=..+-+-.|...-||++.| |
T Consensus 168 giLLy--GPPGTGKSYLAKAVATEAn----STFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiD------E-- 233 (439)
T KOG0739|consen 168 GILLY--GPPGTGKSYLAKAVATEAN----STFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFID------E-- 233 (439)
T ss_pred eEEEe--CCCCCcHHHHHHHHHhhcC----CceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEee------h--
Confidence 44444 6799999999999955322 1133344556553 1 222223333344444677777 2
Q ss_pred HHHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhcc--CCCCCCCCCCCCchhHHHHHHHhhcCCchhhhH
Q 046016 851 RQIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERV--NHPGNLDKNSPNAGYVLLMFYHLYEGKSRKEFD 928 (1112)
Q Consensus 851 r~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~--nH~G~LDkssp~Ag~VllMFy~LY~~k~r~ef~ 928 (1112)
|.-+|++..-. +||..++ +--=++--||-+ |..|-|=-++-|--+| ++
T Consensus 234 --iDslcg~r~en------EseasRR-------IKTEfLVQMqGVG~d~~gvLVLgATNiPw~---------------LD 283 (439)
T KOG0739|consen 234 --IDSLCGSRSEN------ESEASRR-------IKTEFLVQMQGVGNDNDGVLVLGATNIPWV---------------LD 283 (439)
T ss_pred --hhhhccCCCCC------chHHHHH-------HHHHHHHhhhccccCCCceEEEecCCCchh---------------HH
Confidence 56778765433 3333111 111122234555 3334444444444444 68
Q ss_pred HHHHHHhcCcEeeec
Q 046016 929 GELVERFGSLIKMPL 943 (1112)
Q Consensus 929 seL~~rF~~lVkmPl 943 (1112)
|+|+.||..-|-|||
T Consensus 284 sAIRRRFekRIYIPL 298 (439)
T KOG0739|consen 284 SAIRRRFEKRIYIPL 298 (439)
T ss_pred HHHHHHhhcceeccC
Confidence 999999998888775
No 136
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=83.52 E-value=0.66 Score=46.42 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=22.1
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLG 805 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g 805 (1112)
||..-|.|||||||||+.|....+..|
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccC
Confidence 567779999999999999877666544
No 137
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=83.48 E-value=1 Score=49.78 Aligned_cols=43 Identities=23% Similarity=0.303 Sum_probs=34.4
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
.+..+.+|-+-|-||+|||||.+.+++...+- ..+-++.||..
T Consensus 100 ~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~---~~~~VI~gD~~ 142 (290)
T PRK10463 100 AARKQLVLNLVSSPGSGKTTLLTETLMRLKDS---VPCAVIEGDQQ 142 (290)
T ss_pred HhcCCeEEEEECCCCCCHHHHHHHHHHHhccC---CCEEEECCCcC
Confidence 56789999999999999999999988764322 25677888874
No 138
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=83.42 E-value=0.81 Score=49.76 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
+++..+++-|.||||||++++.|-...
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 556789999999999999999986654
No 139
>PTZ00088 adenylate kinase 1; Provisional
Probab=83.37 E-value=0.64 Score=49.09 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=28.5
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
+-+++-|-|||||||+|+.|-+..| -.|+-+||+++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g------~~~is~gdllr 42 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKEN------LKHINMGNILR 42 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC------CcEEECChHHH
Confidence 3367789999999999999977653 35777899884
No 140
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=83.25 E-value=1.6 Score=51.55 Aligned_cols=25 Identities=32% Similarity=0.736 Sum_probs=19.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.|+| |-|-||||||+|+|.|.+..+
T Consensus 217 ~GIL--LyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 217 KGVL--LYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred cceE--EECCCCCcHHHHHHHHHHhhc
Confidence 3544 459999999999999877543
No 141
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=83.20 E-value=1.5 Score=49.24 Aligned_cols=25 Identities=28% Similarity=0.680 Sum_probs=19.6
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.|+|++ |-||||||+|++.|-+..+
T Consensus 166 ~gvLL~--GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 166 KGVLLY--GPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred CceEEE--CCCCCChHHHHHHHHHHhC
Confidence 355555 9999999999999976543
No 142
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=83.17 E-value=0.93 Score=45.85 Aligned_cols=40 Identities=30% Similarity=0.427 Sum_probs=29.1
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCC-CCCCcceecccc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGG-LGDNRPIHTLMG 815 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg-~g~~rpv~sLmG 815 (1112)
.|.-|.|.|-+|+|||+|+.+++..--- ++||+.+-...+
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~g~~lvaDD~v~v~~~~ 53 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKRGHRLVADDRVVVKREG 53 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcCCeEEECCEEEEEEEC
Confidence 4777889999999999999999886322 456655443333
No 143
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=83.16 E-value=1.3 Score=48.64 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=18.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.|+++ -|-||||||+|++.|.+..
T Consensus 157 ~gvLL--~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 157 KGVLL--YGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred ceEEE--ECCCCCCHHHHHHHHHHhC
Confidence 35444 4999999999999996644
No 144
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=83.15 E-value=1.4 Score=46.56 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.4
Q ss_pred EccCCCCchhhHHHHHHHhcC
Q 046016 781 FFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 781 FFPgIPGcaKSaLCkei~~~p 801 (1112)
-+.|.||+|||||++-|....
T Consensus 4 ~liG~pnvGKSTLln~L~~~~ 24 (270)
T TIGR00436 4 AILGRPNVGKSTLLNQLHGQK 24 (270)
T ss_pred EEECCCCCCHHHHHHHHhCCc
Confidence 345999999999999997643
No 145
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.12 E-value=2.1 Score=41.58 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=28.1
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG 820 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG 820 (1112)
++.|-|-||+|||++|..+.......| ..|..+..|..+-
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcCCCCh
Confidence 455679999999999888765433333 3677777887763
No 146
>PLN02165 adenylate isopentenyltransferase
Probab=82.91 E-value=1.3 Score=49.90 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=27.3
Q ss_pred cccCCCcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 771 EVQKDEGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 771 ~v~k~~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
+.....|-++++-|-+|||||+|+..|-...++
T Consensus 37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l~~ 69 (334)
T PLN02165 37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRFPS 69 (334)
T ss_pred cccCCCCCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence 446677889999999999999999998776554
No 147
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=82.78 E-value=0.94 Score=43.60 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.0
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+.-|.|.|.||.|||+|++-|..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhc
Confidence 45677899999999999999964
No 148
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=82.78 E-value=1.6 Score=43.93 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=20.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALF 51 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 457777788999999999999883
No 149
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=82.75 E-value=2.1 Score=49.72 Aligned_cols=159 Identities=23% Similarity=0.252 Sum_probs=88.6
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC--ccchHHHHHHhhcCCceEEEecCCCCChhHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK--GKYWQKVADERRRKPYSVMLADKNAPNEEVWRQI 853 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK--GrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~I 853 (1112)
.|=.+-+-|-+|||||+|++.|....- .+.-+-.++|.... .+|+.....+..-+...|+.+..|-|+.+-++.
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra- 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA- 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCC---CCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH-
Confidence 333345558899999999998854321 11123345665433 267777776655445567778888888775544
Q ss_pred HHHhccCCc-------cccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCCchhh
Q 046016 854 EDMCRRTRA-------SAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGKSRKE 926 (1112)
Q Consensus 854 edmC~~t~A-------~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k~r~e 926 (1112)
.....+.| -.|-+|=|+-- . -+++. |-+. .+=+..|..||...+|.++
T Consensus 231 -~~~a~~iAEyfr~~G~~VLlilDslT--r---~a~A~-----reis------l~~~e~p~~G~~~~~~s~l-------- 285 (432)
T PRK06793 231 -AKLATSIAEYFRDQGNNVLLMMDSVT--R---FADAR-----RSVD------IAVKELPIGGKTLLMESYM-------- 285 (432)
T ss_pred -HHHHHHHHHHHHHcCCcEEEEecchH--H---HHHHH-----HHHH------HHhcCCCCCCeeeeeeccc--------
Confidence 33333332 35666767621 0 12332 2221 1112233347776666542
Q ss_pred hHHHHHHHhc-----CcEeeeccc--CC--CCCCchhHHHHHHhhhhh
Q 046016 927 FDGELVERFG-----SLIKMPLLK--DD--RSPLPDHVRSVLEEGISW 965 (1112)
Q Consensus 927 f~seL~~rF~-----~lVkmPllk--~d--r~~lP~~v~~~l~eGl~l 965 (1112)
+.|.||-| ++--+|..- .| ..|+|+.+++|++==|-|
T Consensus 286 --~~L~ERag~~~~GSiT~~~tvlv~~dD~~dpI~d~~~si~DG~ivL 331 (432)
T PRK06793 286 --KKLLERSGKTQKGSITGIYTVLVDGDDLNGPVPDLARGILDGHIVL 331 (432)
T ss_pred --hhHHHHhccCCCcceEEEEEEEecCCCCCCcchHHhhhhcceEEEE
Confidence 55666544 554455432 22 569999999988765544
No 150
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=82.74 E-value=1.2 Score=45.17 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=33.3
Q ss_pred cccCCCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 771 EVQKDEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 771 ~v~k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
-+++..=.++.|.|.+|+|||||.+.++...+. ...+.++.||..
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~---~~~v~v~~~~~~ 60 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKD---EVKIAVIEGDVI 60 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhc---CCeEEEEECCCC
Confidence 345556677899999999999999998876432 125667777764
No 151
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=82.69 E-value=0.79 Score=53.56 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
..|=|||..|=.|||||||||-+.
T Consensus 347 krGelvFliG~NGsGKST~~~LLt 370 (546)
T COG4615 347 KRGELVFLIGGNGSGKSTLAMLLT 370 (546)
T ss_pred ecCcEEEEECCCCCcHHHHHHHHh
Confidence 468899999999999999999873
No 152
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=82.68 E-value=1 Score=46.36 Aligned_cols=29 Identities=31% Similarity=0.288 Sum_probs=23.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
.+..|+-+-|.+|||||||++.|......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45688899999999999999998765443
No 153
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=82.62 E-value=0.77 Score=42.38 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+-|-+|||||+|.+-|
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l 31 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKAL 31 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCCEEEEEccCCCccccceeee
Confidence 46778888999999999999988
No 154
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=82.59 E-value=4.2 Score=44.00 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=16.6
Q ss_pred CcEEEEccCCCCchhhHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei 797 (1112)
++-++.|.|.|||||||+|--|
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akL 92 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKL 92 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 3445555599999999998766
No 155
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=82.57 E-value=0.9 Score=40.78 Aligned_cols=100 Identities=19% Similarity=0.175 Sum_probs=48.5
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHhcc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMCRR 859 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC~~ 859 (1112)
|.+.|-||+|||+|++.+.+...--...+.. |-....+... -..+...+.+.|- |..+.|+.+...+-.
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~----~~~~~~~~~~-----~~~~~~~~~l~D~--~g~~~~~~~~~~~~~ 71 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGKFDENYKSTI----GVDFKSKTIE-----IDGKTVKLQIWDT--AGQERFRSITPSYYR 71 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCcCCCccCCce----eeeeEEEEEE-----ECCEEEEEEEEec--CChHHHHHHHHHHhc
Confidence 5578999999999999986432222111110 1000000000 0023456777774 555556665554444
Q ss_pred CCccccccccCCCCCCCCcCchHHHHHHHHHHhhcc
Q 046016 860 TRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERV 895 (1112)
Q Consensus 860 t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~ 895 (1112)
.....|-|+.-+. |=+++.+...+..++++.
T Consensus 72 ~~d~ii~v~d~~~-----~~~~~~~~~~~~~~~~~~ 102 (159)
T cd00154 72 GAHGAILVYDITN-----RESFENLDKWLKELKEYA 102 (159)
T ss_pred CCCEEEEEEECCC-----HHHHHHHHHHHHHHHHhC
Confidence 3333444444322 223555555454555443
No 156
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=82.16 E-value=0.92 Score=39.13 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=17.4
Q ss_pred cCCCCchhhHHHHHHHhcCC
Q 046016 783 PGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 783 PgIPGcaKSaLCkei~~~pg 802 (1112)
-|-||||||+|++-|...+.
T Consensus 2 iG~~~~GKStl~~~l~~~~~ 21 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEF 21 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCc
Confidence 58899999999999977665
No 157
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=81.99 E-value=0.96 Score=41.71 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=17.6
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.|.|-||||||+|++-+.+
T Consensus 3 i~~vG~~~vGKTsli~~l~~ 22 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCE 22 (168)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57889999999999998864
No 158
>PRK14974 cell division protein FtsY; Provisional
Probab=81.97 E-value=5.5 Score=44.85 Aligned_cols=160 Identities=17% Similarity=0.189 Sum_probs=79.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc---cchHHHHHHhhcCCceEEEec-CCCCChhHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG---KYWQKVADERRRKPYSVMLAD-KNAPNEEVW 850 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG---rYWqkVa~eR~kkp~si~lAD-KNaP~~~vW 850 (1112)
..+.++.|.|.||+||||+|.-|...-..-| ..|....+|+.+. ..|+..++.- .+.+.-.. ..-|.+-++
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g--~~V~li~~Dt~R~~a~eqL~~~a~~l---gv~v~~~~~g~dp~~v~~ 212 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG--FSVVIAAGDTFRAGAIEQLEEHAERL---GVKVIKHKYGADPAAVAY 212 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcCcHHHHHHHHHHHHHc---CCceecccCCCCHHHHHH
Confidence 3467888999999999997665543322222 3677788998763 3454444431 12222221 122333345
Q ss_pred HHHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCCchhhhHHH
Q 046016 851 RQIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGKSRKEFDGE 930 (1112)
Q Consensus 851 r~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k~r~ef~se 930 (1112)
+.|+.+... +. --||=|.-|.. +...+.+.-. +-+.|+..| ..- +|++=. .. | .+-.+.
T Consensus 213 ~ai~~~~~~-~~--DvVLIDTaGr~--~~~~~lm~eL--~~i~~~~~p--------d~~-iLVl~a-~~-g---~d~~~~ 271 (336)
T PRK14974 213 DAIEHAKAR-GI--DVVLIDTAGRM--HTDANLMDEL--KKIVRVTKP--------DLV-IFVGDA-LA-G---NDAVEQ 271 (336)
T ss_pred HHHHHHHhC-CC--CEEEEECCCcc--CCcHHHHHHH--HHHHHhhCC--------ceE-EEeecc-cc-c---hhHHHH
Confidence 555554322 22 25667776643 3333333321 333333222 111 111111 11 1 111211
Q ss_pred HHHHhc---CcEeeecccCCCCCCchhHHHHHHh
Q 046016 931 LVERFG---SLIKMPLLKDDRSPLPDHVRSVLEE 961 (1112)
Q Consensus 931 L~~rF~---~lVkmPllk~dr~~lP~~v~~~l~e 961 (1112)
. ..|. ++-.+=+.|=|.++-.+.+.++..+
T Consensus 272 a-~~f~~~~~~~giIlTKlD~~~~~G~~ls~~~~ 304 (336)
T PRK14974 272 A-REFNEAVGIDGVILTKVDADAKGGAALSIAYV 304 (336)
T ss_pred H-HHHHhcCCCCEEEEeeecCCCCccHHHHHHHH
Confidence 1 2332 3444557788888888888887665
No 159
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=81.55 E-value=1.3 Score=46.42 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=21.6
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGL 804 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~ 804 (1112)
+++-.-|-|||||||.|+-+.+ +|+
T Consensus 3 ~iIglTG~igsGKStva~~~~~--~G~ 27 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE--LGF 27 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH--cCC
Confidence 5778889999999999999866 665
No 160
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=81.50 E-value=1.1 Score=48.53 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.++-++.+-|-|||||||||..+...
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45777778899999999999997654
No 161
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=81.38 E-value=2.5 Score=45.94 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=35.3
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc--cchHHHHHHhhcCCceEEEecCCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG--KYWQKVADERRRKPYSVMLADKNA 844 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG--rYWqkVa~eR~kkp~si~lADKNa 844 (1112)
+.|=|-|||||++|+.-|-+..+ .+++.+.|..+.. .-+.-+.. =++..|++.|-=.
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~-----~~~~~~sg~~i~k~~dl~~il~~---l~~~~ILFIDEIH 111 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELG-----VNFKITSGPAIEKAGDLAAILTN---LKEGDILFIDEIH 111 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT-------EEEEECCC--SCHHHHHHHHT-----TT-EEEECTCC
T ss_pred EEEECCCccchhHHHHHHHhccC-----CCeEeccchhhhhHHHHHHHHHh---cCCCcEEEEechh
Confidence 56779999999999999977765 2677777765543 23332222 1456688888644
No 162
>PLN02796 D-glycerate 3-kinase
Probab=80.98 E-value=3.6 Score=46.86 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=23.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccccc
Q 046016 667 QMNIWGTSAVKQRQLSKMLDEWAVYIRRKYGNKQL 701 (1112)
Q Consensus 667 qmk~WGtSa~kq~el~~~ldeWA~yir~k~g~k~L 701 (1112)
.+..||+.++...+- +++|..+..+-|-.=++
T Consensus 26 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 57 (347)
T PLN02796 26 LISKLGLTAEDVAES---IDEWIAHGLRLCRLLQF 57 (347)
T ss_pred chhhhCCCHHHHHHH---HHHHHHHHHHHHHHcCC
Confidence 578999999977664 99999997665553333
No 163
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=80.92 E-value=1 Score=45.43 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=17.6
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
+|.-|-||||||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 5778999999999999877643
No 164
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=80.87 E-value=0.97 Score=47.54 Aligned_cols=146 Identities=21% Similarity=0.331 Sum_probs=73.7
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc-cchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG-KYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMC 857 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG-rYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC 857 (1112)
++-.-|.||+||||+|+-|- .+|. ++-.+. |+++. .+-..+-+.|+ ++. +|- ..+=..++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~----~lg~--~~i~l~-el~~e~~~~~~~de~r~----s~~-vD~----d~~~~~le~~~ 65 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR----ELGY--KVIELN-ELAKENGLYTEYDELRK----SVI-VDV----DKLRKRLEELL 65 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH----HhCC--ceeeHH-HHHHhcCCeeccCCccc----eEE-eeH----HHHHHHHHHHh
Confidence 45567999999999999984 4555 454444 77763 22222211111 221 121 12222333221
Q ss_pred ccCC-------ccccccccCCC-CCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCCchhhhHH
Q 046016 858 RRTR-------ASAVPVVPDSG-GTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGKSRKEFDG 929 (1112)
Q Consensus 858 ~~t~-------A~~VPVvpdse-Gt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k~r~ef~s 929 (1112)
.... +-.+| -+|-+ =++-+|..| .-|.-.|=-++++..-+-.. -+ ..-.+.
T Consensus 66 ~~~~~Ivd~H~~hl~~-~~dlVvVLR~~p~~L------~~RLk~RGy~~eKI~ENveA--Ei------------~~vi~~ 124 (180)
T COG1936 66 REGSGIVDSHLSHLLP-DCDLVVVLRADPEVL------YERLKGRGYSEEKILENVEA--EI------------LDVILI 124 (180)
T ss_pred ccCCeEeechhhhcCC-CCCEEEEEcCCHHHH------HHHHHHcCCCHHHHHHHHHH--HH------------HHHHHH
Confidence 1111 11222 11110 123344333 34555555677665543211 01 112455
Q ss_pred HHHHHhcCcEeeecccCCCCCCchhHHHHHHh
Q 046016 930 ELVERFGSLIKMPLLKDDRSPLPDHVRSVLEE 961 (1112)
Q Consensus 930 eL~~rF~~lVkmPllk~dr~~lP~~v~~~l~e 961 (1112)
|-.++|..++.+++...+...+++++..++.-
T Consensus 125 EA~E~~~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 125 EAVERFEAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred HHHHhcCceEEEECCCCCHHHHHHHHHHHHcc
Confidence 67778999999999887777677777776654
No 165
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=80.81 E-value=1.1 Score=44.67 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.6
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
|+..-|-|||||||+|+.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 466779999999999999987
No 166
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=80.74 E-value=3 Score=51.29 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.1
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+.-|.||+|||+|+|+|+...
T Consensus 452 ~~I~G~sGsGKS~l~k~l~~~~ 473 (844)
T PRK13721 452 MAVCGTSGAGKTGLIQPLIRSV 473 (844)
T ss_pred EEEEcCCCCCHHHHHHHHHHhh
Confidence 3456999999999999997654
No 167
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=80.69 E-value=1.3 Score=42.75 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|-++-+.|-+|||||+|++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 568888999999999999999985
No 168
>PRK13976 thymidylate kinase; Provisional
Probab=80.56 E-value=1.1 Score=46.58 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
++-|=||.||||||+++.|.+...
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~ 25 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLS 25 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 567889999999999999866543
No 169
>PRK14529 adenylate kinase; Provisional
Probab=80.38 E-value=1 Score=47.81 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=24.8
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
++|-|.|||||||+|+.|-+..+ + .|+=.||+++
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~-~-----~~is~gdllr 36 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD-L-----AHIESGAIFR 36 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC-C-----CCcccchhhh
Confidence 56789999999999999876553 2 2334566664
No 170
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=80.21 E-value=0.94 Score=51.05 Aligned_cols=44 Identities=25% Similarity=0.481 Sum_probs=29.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCC---------CCccee--cccccccC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLG---------DNRPIH--TLMGDLTK 819 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g---------~~rpv~--sLmGD~iK 819 (1112)
...+|=+-|+||+|||||.-++..---.-| -.+|.+ ++|||.|+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 344677889999999999888655221112 123444 89999986
No 171
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=80.10 E-value=1.2 Score=41.59 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=18.3
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
+.+-|-||||||+|++.+.+.
T Consensus 3 i~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 568899999999999998764
No 172
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=80.05 E-value=4.6 Score=46.94 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=26.7
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
.-++.|.|.||+||||+|.-|.....--| ..|..+--|..+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~D~~R 135 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAADTYR 135 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEecCCCCC
Confidence 34666779999999999988744322222 355556666654
No 173
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=79.76 E-value=1.5 Score=40.29 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=19.6
Q ss_pred EEccCCCCchhhHHHHHHHhcCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pg 802 (1112)
|.+-|-||+|||+|++.|.+...
T Consensus 5 i~i~G~~~~GKstli~~l~~~~~ 27 (174)
T cd01895 5 IAIIGRPNVGKSSLVNALLGEER 27 (174)
T ss_pred EEEEcCCCCCHHHHHHHHhCccc
Confidence 67789999999999999976543
No 174
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=79.73 E-value=4.5 Score=47.09 Aligned_cols=52 Identities=21% Similarity=0.322 Sum_probs=32.3
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC-ccchH-HHHHHhh
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK-GKYWQ-KVADERR 831 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK-GrYWq-kVa~eR~ 831 (1112)
-++.|.|.|||||||+|.-|-..-..-| ..|-.+-.|+.+ |-+|| +...++.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~~D~~R~aA~eQLk~~a~~~ 154 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVCADTFRAGAFDQLKQNATKA 154 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcCcccchhHHHHHHHHhhcc
Confidence 4777999999999999887743322112 255666677766 44444 3334443
No 175
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=79.65 E-value=0.57 Score=47.79 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=41.6
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHhcc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMCRR 859 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC~~ 859 (1112)
|.+-|=||+||||+|+.|-+. +| ..|.=.||...+--|..-...+.-+ .++-.++=.|-+-++..|++--..
T Consensus 3 iiilG~pGaGK~T~A~~La~~---~~---i~hlstgd~~r~~~~~~t~lg~~~k--~~i~~g~lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK---LG---LPHLDTGDILRAAIAERTELGEEIK--KYIDKGELVPDEIVNGLVKERLDE 74 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH---hC---CcEEcHhHHhHhhhccCChHHHHHH--HHHHcCCccchHHHHHHHHHHHHh
Confidence 566799999999999999887 32 3455567776654443311111111 133333333666666666654433
No 176
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=79.62 E-value=1.3 Score=42.77 Aligned_cols=27 Identities=33% Similarity=0.588 Sum_probs=21.0
Q ss_pred EEEccCCCCchhhHHHHHHHhc-CCCCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNA-PGGLG 805 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~-pgg~g 805 (1112)
++.+-|-+|||||+|.+.|... +.+++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~ 28 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFG 28 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccce
Confidence 3566799999999999999876 44444
No 177
>PRK15453 phosphoribulokinase; Provisional
Probab=79.58 E-value=1.4 Score=48.95 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=31.1
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
...|+-.-|-|||||||+|+.|.+.-+..+. .+.++.||-.-
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~--~~~vi~~D~yh 45 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENI--NAAVVEGDSFH 45 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCC--CeEEEeccccc
Confidence 3457777899999999999998776555443 45677777654
No 178
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=79.56 E-value=0.83 Score=50.34 Aligned_cols=45 Identities=27% Similarity=0.485 Sum_probs=27.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCC---------Cccee--cccccccC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGD---------NRPIH--TLMGDLTK 819 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~---------~rpv~--sLmGD~iK 819 (1112)
....++=+-|-||+|||||..++....-.-|. .+|.. ++.||+|+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiR 82 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIR 82 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGG
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHH
Confidence 35678888999999999998886653322231 23444 78999997
No 179
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=79.44 E-value=1.6 Score=39.63 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.3
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
|+-+.+-|-||+|||+|++-|....
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~ 25 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRD 25 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCc
Confidence 6678889999999999999986543
No 180
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=79.41 E-value=1.3 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
+| ++.+-|-+|||||||.+-|.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~ 46 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILA 46 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHh
Confidence 48 99999999999999999983
No 181
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=79.38 E-value=5.8 Score=39.12 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.1
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
.-|.+.|-||||||+|.+.+..
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~ 39 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKN 39 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3456789999999999998854
No 182
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=79.08 E-value=2.1 Score=48.86 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=31.6
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccch-------HH-HHHHhhcCCceEEE
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYW-------QK-VADERRRKPYSVML 839 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYW-------qk-Va~eR~kkp~si~l 839 (1112)
+.|-|.||||||.|+|.+-+..+. +.+.+..+| +-++|= .+ ...+|+..|.-|.+
T Consensus 279 iLl~GpPGtGKT~lAkava~~~~~----~fi~v~~~~-l~sk~vGesek~ir~~F~~A~~~~p~iiFi 341 (494)
T COG0464 279 VLLYGPPGTGKTLLAKAVALESRS----RFISVKGSE-LLSKWVGESEKNIRELFEKARKLAPSIIFI 341 (494)
T ss_pred eEEECCCCCCHHHHHHHHHhhCCC----eEEEeeCHH-HhccccchHHHHHHHHHHHHHcCCCcEEEE
Confidence 445599999999999999663222 244455553 334333 22 33344445555554
No 183
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=78.87 E-value=1.4 Score=40.38 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=17.1
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+-|-||||||+|++-+.+
T Consensus 4 i~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 45679999999999999864
No 184
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=78.83 E-value=1.6 Score=43.52 Aligned_cols=30 Identities=23% Similarity=0.421 Sum_probs=25.0
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc-CCCCCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA-PGGLGD 806 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~-pgg~g~ 806 (1112)
|.++.+-|-+|+||++|++.|++. |.+++.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~ 32 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFER 32 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEe
Confidence 568889999999999999999876 556654
No 185
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=78.64 E-value=1.3 Score=39.93 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=16.9
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+-|-||||||+|.+-|.+
T Consensus 2 i~i~G~~~~GKssl~~~l~~ 21 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAG 21 (159)
T ss_pred EEEEcCCCCCHHHHHHHHcc
Confidence 45679999999999999854
No 186
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=78.61 E-value=4.7 Score=40.84 Aligned_cols=72 Identities=14% Similarity=0.241 Sum_probs=41.2
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHH
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIED 855 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~Ied 855 (1112)
++++++-|=||+|||++|..+....+. ..++.--|+...--.=+.+..-+.++|......+. +-++-+.|++
T Consensus 1 ~~~ili~G~~~sGKS~~a~~l~~~~~~----~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~---~~~l~~~i~~ 72 (170)
T PRK05800 1 GMLILVTGGARSGKSRFAERLAAQSGL----QVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEE---PLDLAELLRA 72 (170)
T ss_pred CCEEEEECCCCccHHHHHHHHHHHcCC----CcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecc---cccHHHHHHh
Confidence 457899999999999999998765321 12233333322111114454545555655555554 2245556665
No 187
>PRK07933 thymidylate kinase; Validated
Probab=78.59 E-value=1.4 Score=45.54 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=22.3
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLG 805 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g 805 (1112)
+++-|=||-||||||+|+.|.+....-|
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g 28 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARG 28 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 3567889999999999999877655444
No 188
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=78.47 E-value=1.5 Score=40.48 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.2
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|.+-|-||||||+|++-+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 567899999999999998654
No 189
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=78.38 E-value=1.6 Score=44.75 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.3
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
++|-.-|.+|||||++|+-+..
T Consensus 6 ~~igitG~igsGKSt~~~~l~~ 27 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE 27 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5777889999999999999864
No 190
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.23 E-value=2.4 Score=43.07 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-.-|-+|||||||++-|
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l 48 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLI 48 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 56778888899999999999988
No 191
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=78.21 E-value=0.67 Score=45.52 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=19.2
Q ss_pred ccCCCCchhhHHHHHHHhcCCCCC
Q 046016 782 FPGIPGCAKSALCKELLNAPGGLG 805 (1112)
Q Consensus 782 FPgIPGcaKSaLCkei~~~pgg~g 805 (1112)
|=||.||||||+|+.|.+...+.|
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~ 24 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKG 24 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcC
Confidence 459999999999999976655544
No 192
>PTZ00301 uridine kinase; Provisional
Probab=78.20 E-value=1.6 Score=45.66 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.6
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
.||=.-|.||+||||||+.|.+
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 5677789999999999988754
No 193
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=78.16 E-value=6.2 Score=37.91 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=62.3
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHhc
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMCR 858 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC~ 858 (1112)
|.|+-+-+|+|||+++..+.......|. .+..+-.|.-.+.++ +-++|.|-....++..+.+-..|+
T Consensus 2 i~~~~~kgg~gkt~~~~~~a~~~~~~~~--~~~~vd~D~~~~~~~-----------yd~VIiD~p~~~~~~~~~~l~~aD 68 (139)
T cd02038 2 IAVTSGKGGVGKTNISANLALALAKLGK--RVLLLDADLGLANLD-----------YDYIIIDTGAGISDNVLDFFLAAD 68 (139)
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHHCCC--cEEEEECCCCCCCCC-----------CCEEEEECCCCCCHHHHHHHHhCC
Confidence 6678899999999999888776654443 566777777666676 899999998755555556655553
Q ss_pred cCCccccccccCCCCCCCCcCchHHHHHHHHHHhh
Q 046016 859 RTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLE 893 (1112)
Q Consensus 859 ~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~ 893 (1112)
...+|+-|+. +++..+.-++ +.|+
T Consensus 69 ---~vviv~~~~~-------~s~~~~~~~l-~~l~ 92 (139)
T cd02038 69 ---EVIVVTTPEP-------TSITDAYALI-KKLA 92 (139)
T ss_pred ---eEEEEcCCCh-------hHHHHHHHHH-HHHH
Confidence 4566766654 4466554443 4443
No 194
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=77.94 E-value=1.6 Score=40.89 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=18.2
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|.+-|-||||||+|.+-+.+.
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 567899999999999998764
No 195
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=77.93 E-value=2.2 Score=44.85 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=17.9
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
.=++|-|=||||||+|++.|-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 3366789999999999988754
No 196
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=77.85 E-value=2.3 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|=+|||||||++-|.
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~ 54 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLIN 54 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 578888899999999999999984
No 197
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=77.83 E-value=1.7 Score=44.08 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~ 47 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLN 47 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 578889999999999999999984
No 198
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=77.82 E-value=1.6 Score=40.51 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=16.6
Q ss_pred EEccCCCCchhhHHHHHHH
Q 046016 780 VFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~ 798 (1112)
|.+-|-||||||+|++-++
T Consensus 4 i~i~G~~~vGKTsl~~~~~ 22 (163)
T cd04136 4 VVVLGSGGVGKSALTVQFV 22 (163)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5677999999999988875
No 199
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=77.66 E-value=1.4 Score=42.59 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=16.1
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|.|-|=|||||||||+.|-..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 456789999999999999766
No 200
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=77.45 E-value=1.5 Score=49.96 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=23.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
...|+.+-|-||||||+|++.|.+..+.
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3467899999999999999888665554
No 201
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=77.10 E-value=1.8 Score=44.57 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+.-+|..-|++|+|||+|++++.+.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 56678899999999999999987764
No 202
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=76.88 E-value=1.3 Score=47.03 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=17.3
Q ss_pred cCCCCchhhHHHHHHHhcCCCC
Q 046016 783 PGIPGCAKSALCKELLNAPGGL 804 (1112)
Q Consensus 783 PgIPGcaKSaLCkei~~~pgg~ 804 (1112)
-|-||+||||+|+.+-+.....
T Consensus 2 iGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 2 IGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhc
Confidence 4889999999999986654444
No 203
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=76.84 E-value=1.6 Score=39.58 Aligned_cols=20 Identities=35% Similarity=0.506 Sum_probs=16.9
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+-|-+|||||||++-|.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 34679999999999999973
No 204
>PRK13768 GTPase; Provisional
Probab=76.68 E-value=1.8 Score=45.89 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=27.6
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDL 817 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~ 817 (1112)
.+++|-|.+|+||||+|.-+..+-... +++|.++..|.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~--g~~v~~i~~D~ 40 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ--GYDVAIVNLDP 40 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc--CCceEEEECCC
Confidence 466777999999999999886554333 34677766664
No 205
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=76.57 E-value=1.8 Score=40.25 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=17.4
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|++-|-||||||+|.+-+++
T Consensus 3 i~liG~~~~GKSsli~~l~~ 22 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMY 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 56789999999999999864
No 206
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=76.49 E-value=2 Score=43.43 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.|-++-+-|-||||||+||..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~ 40 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLA 40 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 57788889999999999999984
No 207
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=76.30 E-value=2 Score=45.49 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.2
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
..|-..|+||.||||+||...+-
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHH
Confidence 46777899999999999997543
No 208
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=76.29 E-value=4.3 Score=50.31 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=42.5
Q ss_pred EccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHhccC
Q 046016 781 FFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMCRRT 860 (1112)
Q Consensus 781 FFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC~~t 860 (1112)
+.-|.||+|||+|+|.|+...- +-.+..|.+.||..--+-+-+.++-+|+.-
T Consensus 492 ~I~G~tGsGKS~l~~~L~~~~~----------------------------k~~~~~v~i~D~~~s~~~~~~~~~~~~~a~ 543 (852)
T PRK13891 492 FMFGPTGAGKSTHLGIIAAQLR----------------------------RYAGMSIYAFDKGMSMYPLAAGIRAATKGK 543 (852)
T ss_pred EEECCCCCCHHHHHHHHHHHHH----------------------------hcCCCEEEEEcCCcccccccchhhHhHhhc
Confidence 4559999999999999854211 112345888897752211111222255544
Q ss_pred CccccccccCCCCCCCCcCch
Q 046016 861 RASAVPVVPDSGGTESNPFSL 881 (1112)
Q Consensus 861 ~A~~VPVvpdseGt~~~PFSL 881 (1112)
+..-+-+=++.+.+.-|||.+
T Consensus 544 GG~y~~l~~~~~~~~~NPf~~ 564 (852)
T PRK13891 544 SGLHFTVAADDDRLAFCPLQF 564 (852)
T ss_pred CCEEEecCCCCCCcccCCccc
Confidence 444333334445678899985
No 209
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=76.23 E-value=2 Score=43.02 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIA 47 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999984
No 210
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=76.17 E-value=1.9 Score=39.59 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=17.9
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
+.+-|-+|||||+|++-+.+.
T Consensus 3 i~i~G~~~~GKStli~~l~~~ 23 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVEN 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 457799999999999998754
No 211
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=76.05 E-value=2 Score=43.19 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~ 51 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILG 51 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHh
Confidence 578888899999999999999984
No 212
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=75.80 E-value=1.7 Score=43.29 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.1
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|.+.|-||+|||+|++-|+..
T Consensus 3 i~lvG~~g~GKSsl~N~ilg~ 23 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGR 23 (196)
T ss_pred EEEECCCCCCHHHHHHHhhCC
Confidence 457899999999999999754
No 213
>CHL00181 cbbX CbbX; Provisional
Probab=75.79 E-value=2.4 Score=46.14 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=20.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|+-+.|-|=||||||++.+-|-+
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4577788899999999999888744
No 214
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=75.76 E-value=2.2 Score=42.55 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.|-++.+-|-||||||+||-.+...
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~ 35 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVN 35 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4778889999999999999887543
No 215
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=75.66 E-value=2 Score=43.61 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-+|||||||+|-|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l 46 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLI 46 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 57888999999999999999988
No 216
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=75.39 E-value=1.9 Score=42.64 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.6
Q ss_pred EEEccCCCCchhhHHHHHHHhc
Q 046016 779 IVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~ 800 (1112)
-++|.|.||+|||+|.+-|+..
T Consensus 129 ~~~~~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 129 DVYVVGATNVGKSTLINALLKK 150 (190)
T ss_pred cEEEEcCCCCCHHHHHHHHHHh
Confidence 4789999999999999999764
No 217
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=75.37 E-value=2 Score=43.19 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAIL 52 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 218
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=75.29 E-value=1.7 Score=51.09 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.0
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+|+.|+||||||++.+.+-+..
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L 30 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMM 30 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999986655
No 219
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=75.27 E-value=1.8 Score=46.97 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEccCCCCchhhHHHHHHHhcCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pg 802 (1112)
++|-|-||||||+|++.+-+..+
T Consensus 54 ~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 54 VLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred EEEECCCCccHHHHHHHHHHHhC
Confidence 46779999999999999877654
No 220
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=75.26 E-value=2 Score=41.08 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=18.4
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
=|++.|-||||||+|+.-+.+
T Consensus 6 ki~vvG~~~vGKSsLl~~l~~ 26 (168)
T cd01866 6 KYIIIGDTGVGKSCLLLQFTD 26 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 367889999999999999865
No 221
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=75.16 E-value=2.2 Score=42.00 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALA 48 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999984
No 222
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=75.12 E-value=1.9 Score=45.52 Aligned_cols=22 Identities=27% Similarity=0.464 Sum_probs=18.7
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
++|-|-||||||+|++.|-+..
T Consensus 33 ~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 33 LLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999987654
No 223
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=74.53 E-value=2.1 Score=40.94 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=17.3
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+.|-||||||+|.+-+.+
T Consensus 4 v~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 4 IAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 56889999999999888864
No 224
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=74.38 E-value=2.2 Score=37.67 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=18.3
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|.+-|-||+|||+|..-+....
T Consensus 4 i~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 4 IVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999886543
No 225
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=74.37 E-value=1.7 Score=51.09 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=37.3
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHH
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADE 829 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~e 829 (1112)
-.++.|-|.||||||+++..|-...|- .+++-.|.++-.+|.-+..+
T Consensus 255 p~vil~~G~~G~GKSt~a~~LA~~lg~------~~ii~tD~iR~~lr~~i~~e 301 (475)
T PRK12337 255 PLHVLIGGVSGVGKSVLASALAYRLGI------TRIVSTDAVREVLRAMVSKD 301 (475)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC------cEEeehhHHHHHHHhhcchh
Confidence 478899999999999999998554332 35778999998888877544
No 226
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=74.37 E-value=2.2 Score=39.89 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.9
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
+.+-|-||||||+|++-+++.
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 467799999999999998754
No 227
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=74.31 E-value=2 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.0
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
+|+.|.+||||||+-+.|-+..
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHc
Confidence 6889999999999999886544
No 228
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=74.28 E-value=2.4 Score=41.98 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~ 39 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999884
No 229
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=74.28 E-value=2.4 Score=41.81 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~ 49 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLT 49 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 577788889999999999999984
No 230
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=74.25 E-value=7.3 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=19.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.|-|+.|.|-+||||||++.-|.
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHH
Confidence 45688899999999999977764
No 231
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=74.10 E-value=4.8 Score=40.40 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-.-|-+|||||||++-|.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~ 55 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALF 55 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 567788888999999999999884
No 232
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=74.04 E-value=2.4 Score=42.42 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++..-|-+|||||||++-|.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~ 52 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALL 52 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 677788888999999999999983
No 233
>PRK13695 putative NTPase; Provisional
Probab=73.91 E-value=2.3 Score=41.74 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=23.7
Q ss_pred hhhHHHHHHHhcCcEeeecccCCCCCCchhHHHHH
Q 046016 925 KEFDGELVERFGSLIKMPLLKDDRSPLPDHVRSVL 959 (1112)
Q Consensus 925 ~ef~seL~~rF~~lVkmPllk~dr~~lP~~v~~~l 959 (1112)
..|..+|..+++..| .=+.+-||..||..|...+
T Consensus 139 ~~~~~~i~~~~~~~i-~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 139 HPFVQEIKSRPGGRV-YELTPENRDSLPFEILNRL 172 (174)
T ss_pred HHHHHHHhccCCcEE-EEEcchhhhhHHHHHHHHH
Confidence 467777777777544 4457777888888777643
No 234
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=73.83 E-value=2.2 Score=46.14 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.3
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHH
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
=-.|.++-+-|..|||||||+.+++
T Consensus 18 ip~g~~~~vtGvSGsGKStL~~~~l 42 (261)
T cd03271 18 IPLGVLTCVTGVSGSGKSSLINDTL 42 (261)
T ss_pred ccCCcEEEEECCCCCchHHHHHHHH
Confidence 3578999999999999999999985
No 235
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=73.80 E-value=2.1 Score=47.25 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=24.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+|=++...|..|||||||-+.|+..-.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 6788889999999999999999876443
No 236
>PF13173 AAA_14: AAA domain
Probab=73.77 E-value=2.5 Score=39.75 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=41.9
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC--ccc---hHHHHHHhhcCCceEEEecC--CCCChhHH
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK--GKY---WQKVADERRRKPYSVMLADK--NAPNEEVW 850 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK--GrY---WqkVa~eR~kkp~si~lADK--NaP~~~vW 850 (1112)
-+++.-|..|||||+|.+.+.+... ....+-.+.-|... ... ..+...+..++...+++.|- ++| +.|
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~--~~~ 77 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLP--DWE 77 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhc--cHH
Confidence 4677889999999999999876544 11111111111111 100 22222233333455666664 334 467
Q ss_pred HHHHHHhccC
Q 046016 851 RQIEDMCRRT 860 (1112)
Q Consensus 851 r~IedmC~~t 860 (1112)
+.|..+....
T Consensus 78 ~~lk~l~d~~ 87 (128)
T PF13173_consen 78 DALKFLVDNG 87 (128)
T ss_pred HHHHHHHHhc
Confidence 7777777654
No 237
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=73.71 E-value=2.3 Score=39.90 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=18.7
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
.-|.+-|-||||||+|++-+..
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4478889999999999998863
No 238
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.68 E-value=2.4 Score=43.30 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.|-|.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIV 47 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 688899999999999999999983
No 239
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=73.62 E-value=2.4 Score=42.32 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999984
No 240
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=73.60 E-value=2.4 Score=43.07 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~ 58 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLA 58 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHh
Confidence 578888899999999999999983
No 241
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=73.57 E-value=2.3 Score=40.43 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.8
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+.|-||||||+|++-+++
T Consensus 3 i~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 45679999999999988764
No 242
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=73.56 E-value=2.8 Score=39.65 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=18.7
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=+.+-|-||||||+|++-+++
T Consensus 6 ~ki~vvG~~~~GKTsli~~~~~ 27 (170)
T cd04116 6 LKVILLGDGGVGKSSLMNRYVT 27 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4467889999999999998864
No 243
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=73.53 E-value=7.4 Score=43.27 Aligned_cols=43 Identities=14% Similarity=0.306 Sum_probs=29.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
.+|-++-|.|.||+||||+|.-|...--- .+..|..+-.|+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~--~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKA--QGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCeEEEEecCccc
Confidence 45678888899999999998876442211 12356667778754
No 244
>PLN02199 shikimate kinase
Probab=73.35 E-value=2.4 Score=47.60 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=24.1
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
+...|--+++.|+||||||++++.|-+..
T Consensus 98 ~~l~~~~I~LIG~~GSGKSTVgr~LA~~L 126 (303)
T PLN02199 98 PYLNGRSMYLVGMMGSGKTTVGKLMSKVL 126 (303)
T ss_pred HHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44457788999999999999999996654
No 245
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=73.34 E-value=2.5 Score=42.34 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~ 49 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLY 49 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999884
No 246
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=73.13 E-value=2.6 Score=42.62 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.6
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+-|.|.|+|++|||+|++.|.+.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~ 140 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRS 140 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 456789999999999999999753
No 247
>PRK00089 era GTPase Era; Reviewed
Probab=73.08 E-value=2.8 Score=44.28 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
.|-+.|-||+|||||++-|+.....
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~ 31 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKIS 31 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcee
Confidence 4567799999999999999764433
No 248
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=73.07 E-value=2.2 Score=42.51 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=19.8
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGL 804 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~ 804 (1112)
++++-|-||||||++|+.+.+. ||+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~-~~~ 25 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADK-YHF 25 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-cCC
Confidence 4678899999999999987554 444
No 249
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=73.07 E-value=2.6 Score=42.69 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999883
No 250
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=72.98 E-value=4.6 Score=46.92 Aligned_cols=25 Identities=36% Similarity=0.716 Sum_probs=19.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
..|+|++ |=||||||+|++.|-+.-
T Consensus 217 p~gVLL~--GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 217 PKGVILY--GPPGTGKTLLAKAVANET 241 (438)
T ss_pred CcEEEEE--CCCCCCHHHHHHHHHHhh
Confidence 3466655 999999999999986643
No 251
>PLN02348 phosphoribulokinase
Probab=72.95 E-value=3.2 Score=47.93 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=25.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGL 804 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~ 804 (1112)
..-+||-.-|-+|||||||++.|.+..|+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~ 76 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGA 76 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 455888899999999999999998877654
No 252
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=72.91 E-value=3.8 Score=49.65 Aligned_cols=60 Identities=30% Similarity=0.524 Sum_probs=34.3
Q ss_pred ccCCCCchhhHHHHHHHhc------CCCCCCCcceecccccccCc-cch-------HHHHHHhhcCCceEEEec
Q 046016 782 FPGIPGCAKSALCKELLNA------PGGLGDNRPIHTLMGDLTKG-KYW-------QKVADERRRKPYSVMLAD 841 (1112)
Q Consensus 782 FPgIPGcaKSaLCkei~~~------pgg~g~~rpv~sLmGD~iKG-rYW-------qkVa~eR~kkp~si~lAD 841 (1112)
+-|-||||||+|++.|-+. |..+-+-+.+..=+++++.| +|. .++.++-.+....|++.|
T Consensus 208 L~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiD 281 (731)
T TIGR02639 208 LVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFID 281 (731)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEe
Confidence 4599999999998876542 22222222333335677765 442 234444333445688877
No 253
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=72.85 E-value=4 Score=41.70 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~ 50 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLE 50 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHh
Confidence 567788889999999999999884
No 254
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=72.84 E-value=2.5 Score=43.59 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLN 52 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 255
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=72.81 E-value=1.5 Score=47.89 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=28.3
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG 820 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG 820 (1112)
|+.|-|.||+||||+.||+.+....=+++ +-++..|-..|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~--vi~l~kdy~~~ 42 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWR--VIHLEKDYLRG 42 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhh--ccccchhhhhh
Confidence 67889999999999999998866655554 23344443333
No 256
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=72.78 E-value=2.6 Score=43.50 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLN 50 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 257
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.73 E-value=2.7 Score=43.18 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||+|-|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIA 49 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999983
No 258
>PHA00729 NTP-binding motif containing protein
Probab=72.70 E-value=2.4 Score=45.65 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=20.7
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.-+++-|-||+|||+||..|.+..+
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567789999999999999987544
No 259
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=72.70 E-value=3 Score=39.07 Aligned_cols=21 Identities=38% Similarity=0.513 Sum_probs=17.6
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|-+.|-||||||+|.+-|...
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 446799999999999998653
No 260
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=72.67 E-value=2.7 Score=42.35 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.|-|.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLIL 50 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999983
No 261
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=72.64 E-value=4.9 Score=41.59 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=42.5
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHH
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDM 856 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~Iedm 856 (1112)
|-+..+.|-||||||+|+-.+.-+. -.|.-.-|. |. ...++-.|++.+-.-|.+++-+.+..+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v-----------a~G~~~~g~-~~-----~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i 63 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM-----------ALGKNLFGG-GL-----KVTEPGRVVYLSAEDPREEIHRRLEAI 63 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH-----------hcCccccCC-cc-----ccCCCceEEEEECCCCHHHHHHHHHHH
Confidence 4566778999999999988763221 111111221 11 123566777887777888899888888
Q ss_pred hcc
Q 046016 857 CRR 859 (1112)
Q Consensus 857 C~~ 859 (1112)
+..
T Consensus 64 ~~~ 66 (239)
T cd01125 64 LQH 66 (239)
T ss_pred Hhh
Confidence 764
No 262
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=72.51 E-value=2.3 Score=39.64 Aligned_cols=101 Identities=21% Similarity=0.303 Sum_probs=55.0
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHhcc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMCRR 859 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC~~ 859 (1112)
|.+.|=+|||||+|++.+.+.. +-.+ ...+. |....-+.+ . -..+++.+-|-|-+- .+-+..+.++.-+
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~--~~~~-~~~t~-~~~~~~~~~---~--~~~~~~~l~i~D~~g--~~~~~~~~~~~~~ 70 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE--FPEN-YIPTI-GIDSYSKEV---S--IDGKPVNLEIWDTSG--QERFDSLRDIFYR 70 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS--TTSS-SETTS-SEEEEEEEE---E--ETTEEEEEEEEEETT--SGGGHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHhhc--cccc-ccccc-ccccccccc---c--ccccccccccccccc--ccccccccccccc
Confidence 5678999999999999987632 2211 11111 211111111 0 116778888988653 2345666555433
Q ss_pred CCccccccccCCCCCCCCcCchHHHHHHHHHHhhccC
Q 046016 860 TRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVN 896 (1112)
Q Consensus 860 t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~n 896 (1112)
.....| ++=| -+++=|++.+.-.+-.+.....
T Consensus 71 ~~~~~i-i~fd----~~~~~S~~~~~~~~~~i~~~~~ 102 (162)
T PF00071_consen 71 NSDAII-IVFD----VTDEESFENLKKWLEEIQKYKP 102 (162)
T ss_dssp TESEEE-EEEE----TTBHHHHHTHHHHHHHHHHHST
T ss_pred cccccc-cccc----cccccccccccccccccccccc
Confidence 322233 3333 2456688888866655554444
No 263
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=72.48 E-value=2.7 Score=42.84 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||+|-|.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIA 47 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999984
No 264
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=72.44 E-value=2.2 Score=47.42 Aligned_cols=27 Identities=37% Similarity=0.640 Sum_probs=23.6
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
...+|..+|.-|-.|+|||.|.+.|.+
T Consensus 18 ~~~~~~~~fv~G~~GtGKs~l~~~i~~ 44 (364)
T PF05970_consen 18 ENEEGLNFFVTGPAGTGKSFLIKAIID 44 (364)
T ss_pred HccCCcEEEEEcCCCCChhHHHHHHHH
Confidence 457888999999999999999998765
No 265
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=72.33 E-value=2.5 Score=41.53 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=19.4
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
+|-+.|..||||||||+.|++..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46678999999999999997753
No 266
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=72.33 E-value=5.5 Score=35.59 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=46.2
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHhc
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMCR 858 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC~ 858 (1112)
|+|.=.-.|+|||++|..+..+....| .++..+--|.- +.++|.|-..-... . ...+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~--~~vl~~d~d~~----------------~d~viiD~p~~~~~--~-~~~~l~ 60 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRG--KRVLLIDLDPQ----------------YDYIIIDTPPSLGL--L-TRNALA 60 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCC--CcEEEEeCCCC----------------CCEEEEeCcCCCCH--H-HHHHHH
Confidence 445555789999999999877655433 36777766655 77889985442212 1 224444
Q ss_pred cCCccccccccCC
Q 046016 859 RTRASAVPVVPDS 871 (1112)
Q Consensus 859 ~t~A~~VPVvpds 871 (1112)
......||+-|+.
T Consensus 61 ~ad~viv~~~~~~ 73 (104)
T cd02042 61 AADLVLIPVQPSP 73 (104)
T ss_pred HCCEEEEeccCCH
Confidence 4566678887764
No 267
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=72.32 E-value=2.8 Score=42.94 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
=++.|-|-.|+|||+|++.|+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57889999999999999999654
No 268
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=72.31 E-value=2.6 Score=43.87 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||+|-|.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALS 53 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 269
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=72.30 E-value=2.4 Score=39.31 Aligned_cols=20 Identities=15% Similarity=0.395 Sum_probs=16.8
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+.|-||||||+|.+-+.+
T Consensus 2 i~~vG~~~~GKTsl~~~l~~ 21 (162)
T cd04157 2 ILVVGLDNSGKTTIINQLKP 21 (162)
T ss_pred EEEECCCCCCHHHHHHHHcc
Confidence 35669999999999988865
No 270
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.18 E-value=2.8 Score=42.02 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=22.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~ 45 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIA 45 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 688899999999999999999985
No 271
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.96 E-value=2.7 Score=43.47 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSIN 51 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 578889999999999999999984
No 272
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=71.92 E-value=2.9 Score=41.95 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++..-|-+|||||||.+-|.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~ 47 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMIL 47 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 688899999999999999999984
No 273
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=71.85 E-value=2.8 Score=42.96 Aligned_cols=23 Identities=17% Similarity=0.072 Sum_probs=19.8
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
++..-|-||||||++|+.+.+..
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~ 25 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQK 25 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 67788999999999999987653
No 274
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=71.84 E-value=2.9 Score=43.18 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLN 48 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 275
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=71.82 E-value=2.8 Score=44.50 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++...|-+|||||||+|-|
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l 46 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKIL 46 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 67888899999999999999988
No 276
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.79 E-value=2.8 Score=43.22 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++..-|-+|||||||++-|.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFN 50 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999883
No 277
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=71.77 E-value=2.8 Score=43.29 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++..-|-+|||||||++-|.
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~ 51 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFN 51 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999884
No 278
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=71.77 E-value=2.8 Score=43.37 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILM 47 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999983
No 279
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=71.75 E-value=2.8 Score=41.91 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=21.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-.-|-+|||||||++-|
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l 47 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLI 47 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 57888888999999999999998
No 280
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=71.72 E-value=2.7 Score=43.35 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-.-|-+|||||||++-|.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLA 50 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHh
Confidence 567888889999999999999883
No 281
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=71.66 E-value=2.9 Score=42.79 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||+|-|.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVIT 49 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999983
No 282
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=71.63 E-value=2.8 Score=43.13 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~ 54 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIA 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHc
Confidence 578899999999999999999873
No 283
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=71.63 E-value=2.8 Score=42.80 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=21.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+-|-+|||||||++-|
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l 45 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLI 45 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 57888889999999999999988
No 284
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=71.53 E-value=3.1 Score=41.60 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~ 48 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLN 48 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 285
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=71.49 E-value=2.4 Score=43.63 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.6
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
+-|=|+-||||||||+.|.+..
T Consensus 2 I~iEG~~GsGKSTl~~~L~~~l 23 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKL 23 (219)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5567999999999999987654
No 286
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=71.49 E-value=3 Score=41.21 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.1
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
..|-+-|-||||||+|.+-|.+..
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcch
Confidence 466777999999999999987654
No 287
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=71.46 E-value=3.3 Score=42.54 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=49.1
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHhc
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMCR 858 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC~ 858 (1112)
+|.+-|-+|||||++|+.+.+ . |+ | ++..|.+- ++-- .|...+|+.|.+.-|
T Consensus 3 ~igitG~igsGKst~~~~l~~-~-g~----~--vid~D~i~--------~~~~------------~~~~~~~~~l~~~fg 54 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS-E-GF----L--IVDADQVA--------RDIV------------EPGQPALAELAEAFG 54 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-CC----e--EEeCcHHH--------HHHH------------hcCCHHHHHHHHHhC
Confidence 678889999999999999975 2 22 2 34445331 1100 245567777777666
Q ss_pred cCCccccccccCCCCCCCCcCchHHHHHHHH------HHhhccCCC
Q 046016 859 RTRASAVPVVPDSGGTESNPFSLDALAVFMF------RVLERVNHP 898 (1112)
Q Consensus 859 ~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~------RvL~R~nH~ 898 (1112)
..- .++.|. ..=..||-++| +.|...-||
T Consensus 55 ~~~-------~~~~g~----idR~~L~~~vF~~~~~~~~le~i~hP 89 (200)
T PRK14734 55 DDI-------LNPDGT----LDRAGLAAKAFASPEQTALLNAITHP 89 (200)
T ss_pred ccc-------cCCCCh----hhHHHHHHHHhCCHHHHHHHHHhhCH
Confidence 432 223332 33456676766 566677887
No 288
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=71.39 E-value=3.1 Score=41.85 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~ 48 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILA 48 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 577788999999999999999884
No 289
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=71.39 E-value=2.9 Score=42.76 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~ 56 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLG 56 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999983
No 290
>PRK00023 cmk cytidylate kinase; Provisional
Probab=71.38 E-value=2.8 Score=43.82 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=22.3
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
..++++-|-||||||++|+.|.+..|
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 37899999999999999999966554
No 291
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=70.98 E-value=3.4 Score=36.99 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=18.2
Q ss_pred EEccCCCCchhhHHHHHHHhcCCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
|+.-|=+|||||+|++-+.+-+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 456799999999999988765543
No 292
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=70.93 E-value=3.2 Score=42.20 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
+|-++..=|.||+|||+||.++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~ 34 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIA 34 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 56677888999999999988864
No 293
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=70.87 E-value=3 Score=38.74 Aligned_cols=20 Identities=30% Similarity=0.404 Sum_probs=17.2
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
+.+.|-||+|||+|++-++.
T Consensus 5 i~i~G~~~~GKtsl~~~~~~ 24 (164)
T cd04145 5 LVVVGGGGVGKSALTIQFIQ 24 (164)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 56789999999999888754
No 294
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=70.86 E-value=11 Score=44.87 Aligned_cols=154 Identities=17% Similarity=0.283 Sum_probs=86.5
Q ss_pred EccCCCCchhhHHHHHHHhcCCCCCCCcc-eecccccccC--ccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHh
Q 046016 781 FFPGIPGCAKSALCKELLNAPGGLGDNRP-IHTLMGDLTK--GKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMC 857 (1112)
Q Consensus 781 FFPgIPGcaKSaLCkei~~~pgg~g~~rp-v~sLmGD~iK--GrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC 857 (1112)
-..|=+|+|||+||-..+-.+. +.+.- |-.++|-.-+ ..+|++....-.-+...|.+|.-+.|+.. |-+.+.+
T Consensus 145 ~I~g~~g~GKt~Lal~~I~~q~--~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~--r~~ap~~ 220 (485)
T CHL00059 145 LIIGDRQTGKTAVATDTILNQK--GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATL--QYLAPYT 220 (485)
T ss_pred EeecCCCCCHHHHHHHHHHhcc--cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHH--HHHHHHH
Confidence 3447899999999666443332 33333 5577886544 25666666554445667888888888865 5566666
Q ss_pred ccCCcc-------ccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCCchhhhHHH
Q 046016 858 RRTRAS-------AVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGKSRKEFDGE 930 (1112)
Q Consensus 858 ~~t~A~-------~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k~r~ef~se 930 (1112)
+.|.|- -|=+|=|+ +-.+-=-+.-+++.+=|.--|...| +. +|| +.+.
T Consensus 221 a~aiAEyfr~~G~~VLlv~Dd--lTr~A~A~REisl~l~epPgr~gYP----------~~---vF~----------~~sr 275 (485)
T CHL00059 221 GAALAEYFMYRGRHTLIIYDD--LSKQAQAYRQMSLLLRRPPGREAYP----------GD---VFY----------LHSR 275 (485)
T ss_pred HhhHHHHHHHcCCCEEEEEcC--hhHHHHHHHHHHHhcCCCCCcCCcC----------ch---HHH----------HhHH
Confidence 666554 45566666 1111111222222222222222222 22 344 3455
Q ss_pred HHHH---------hcCcEeeecccCC----CCCCchhHHHHHHhhh
Q 046016 931 LVER---------FGSLIKMPLLKDD----RSPLPDHVRSVLEEGI 963 (1112)
Q Consensus 931 L~~r---------F~~lVkmPllk~d----r~~lP~~v~~~l~eGl 963 (1112)
|.|| =||+--+|+.--. ..|+|+.+.+|++==|
T Consensus 276 LlERag~~~~~~~~GSITal~~V~~~~dD~s~pI~~~v~sItDGqI 321 (485)
T CHL00059 276 LLERAAKLSSQLGEGSMTALPIVETQAGDVSAYIPTNVISITDGQI 321 (485)
T ss_pred HHHhhhcccCCCCCcceEEEEEEEccCCCCCCcchHhhhhhcceEE
Confidence 6665 2566667765443 6799999999876533
No 295
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=70.81 E-value=2.9 Score=39.22 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.4
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+.|-||||||+|.+-+.+
T Consensus 6 i~vvG~~~~GKSsli~~l~~ 25 (165)
T cd01868 6 IVLIGDSGVGKSNLLSRFTR 25 (165)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 56889999999999998853
No 296
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=70.75 E-value=3 Score=43.11 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALN 51 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999983
No 297
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=70.61 E-value=3.8 Score=48.71 Aligned_cols=25 Identities=40% Similarity=0.355 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=.+-+.|-.|||||||+|-|..
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 4677888899999999999999853
No 298
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=70.57 E-value=3 Score=39.19 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.3
Q ss_pred EEccCCCCchhhHHHHHHH
Q 046016 780 VFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~ 798 (1112)
+.+.|-||||||+|.+-+.
T Consensus 4 i~~~G~~~~GKTsli~~~~ 22 (164)
T cd04175 4 LVVLGSGGVGKSALTVQFV 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5667999999999988875
No 299
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=70.54 E-value=3.2 Score=42.13 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIV 47 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999984
No 300
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=70.45 E-value=3.3 Score=41.22 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~ 45 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIG 45 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHh
Confidence 467788899999999999999984
No 301
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=70.38 E-value=3.2 Score=41.71 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-+|||||||.|-|
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l 51 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRML 51 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 57888999999999999999998
No 302
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=70.37 E-value=3.2 Score=42.62 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.|=++.+-|-+|||||||+|-|.
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~ 46 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIG 46 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHH
Confidence 35677889999999999999873
No 303
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=70.37 E-value=3.2 Score=42.47 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++-+-|-+|||||||.|-|..
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~G 35 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCG 35 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5677888999999999999999843
No 304
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=70.35 E-value=3 Score=38.94 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=17.5
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+.|-||||||+|++-+..
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 56789999999999998864
No 305
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=70.33 E-value=3.3 Score=41.74 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.+-|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLT 49 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 577788999999999999999984
No 306
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=70.32 E-value=3.3 Score=41.47 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++..-|-+|||||||.+-|.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~ 47 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIIL 47 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999983
No 307
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=70.32 E-value=3.3 Score=41.51 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~ 48 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIA 48 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999883
No 308
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=70.32 E-value=3.1 Score=45.67 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|=++-+.|-+|||||||++-|+..
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 67888899999999999999998653
No 309
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=70.25 E-value=3.3 Score=42.45 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~ 48 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCIN 48 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999884
No 310
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=70.23 E-value=3.1 Score=42.99 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++..-|-+|||||||++-|.
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~ 52 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFN 52 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 578889999999999999999883
No 311
>PRK08084 DNA replication initiation factor; Provisional
Probab=70.23 E-value=2.9 Score=43.64 Aligned_cols=22 Identities=14% Similarity=0.144 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
--+|+-|-||||||.|+..+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~ 67 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACA 67 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999776644
No 312
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=70.13 E-value=3.3 Score=40.67 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILS 47 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999884
No 313
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=70.11 E-value=3.5 Score=41.45 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=21.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+-|-+|||||||++-|
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l 46 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTI 46 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHH
Confidence 57888999999999999999987
No 314
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=70.11 E-value=3.2 Score=42.88 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-.-|-+|||||||++-|.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLN 53 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHH
Confidence 577788899999999999999984
No 315
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=70.10 E-value=3.1 Score=43.44 Aligned_cols=24 Identities=29% Similarity=0.528 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~ 60 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFN 60 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 316
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=70.09 E-value=3.3 Score=42.82 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLIN 50 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 567788999999999999999984
No 317
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=70.04 E-value=3.2 Score=42.40 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCIN 49 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999883
No 318
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=70.01 E-value=3.3 Score=43.53 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++..-|-+|||||||.+-|.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIA 48 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 319
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=70.01 E-value=3.4 Score=38.53 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=17.4
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+-|-||||||+|+.-+.+
T Consensus 3 i~v~G~~~~GKSsli~~l~~ 22 (161)
T cd01863 3 ILLIGDSGVGKSSLLLRFTD 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 56789999999999998864
No 320
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.97 E-value=3.3 Score=42.13 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.|-|.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLN 48 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 678889999999999999999984
No 321
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=69.96 E-value=3.3 Score=42.49 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++..-|-+|||||||++-|.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLT 48 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999984
No 322
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=69.94 E-value=20 Score=42.72 Aligned_cols=194 Identities=18% Similarity=0.224 Sum_probs=106.3
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcc-eecccccccC--ccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHH
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRP-IHTLMGDLTK--GKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDM 856 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rp-v~sLmGD~iK--GrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~Iedm 856 (1112)
+-..|=+|+|||+||-..+..+. +.+.- |-.++|..-+ -.++......-.-+...|+++--|.|+.+ |.+.+.
T Consensus 165 ~~Ifg~~g~GKt~lal~~i~~~~--~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~--r~~a~~ 240 (502)
T PRK09281 165 ELIIGDRQTGKTAIAIDTIINQK--GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPL--QYLAPY 240 (502)
T ss_pred EEeecCCCCCchHHHHHHHHHhc--CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHH--HHHHHH
Confidence 34457899999999655333232 33333 5577886544 24566555544446678888899999876 667777
Q ss_pred hccCCcc-------ccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCCchhhhHH
Q 046016 857 CRRTRAS-------AVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGKSRKEFDG 929 (1112)
Q Consensus 857 C~~t~A~-------~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k~r~ef~s 929 (1112)
++.|.|- -|-||-|+ +-.+-=.+.-+++-+=|.=-|..+|| + ||| ..+
T Consensus 241 ~a~tiAEyfrd~G~~VLli~Dd--lTr~A~A~REisl~~gepPgr~gyP~----------~---vf~----------~~s 295 (502)
T PRK09281 241 AGCAMGEYFMDNGKDALIVYDD--LSKQAVAYRQLSLLLRRPPGREAYPG----------D---VFY----------LHS 295 (502)
T ss_pred HHHHHHHHHHHcCCCEEEEecC--chHHHHHHHHHHHhcCCCCCCCCcCc----------c---HHH----------HhH
Confidence 7777664 57777777 22221112222322222222223332 2 344 345
Q ss_pred HHHHHh---------cCcEeeecccCC----CCCCchhHHHHHHhhhhh-hhhccccc----Cccc---c--CCCCchhH
Q 046016 930 ELVERF---------GSLIKMPLLKDD----RSPLPDHVRSVLEEGISW-YKLHTSKH----GRLE---S--TKGSYAQE 986 (1112)
Q Consensus 930 eL~~rF---------~~lVkmPllk~d----r~~lP~~v~~~l~eGl~l-~~~h~~~~----gr~E---~--tkgsy~~e 986 (1112)
.|.||= ||+=-+|++--. ..|+|+.+.+|++-=|=| -.++.+-| ..+. + .+.+ .++
T Consensus 296 ~LlERag~~~~~~~~GSITal~~V~~~~dD~s~pI~d~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~~-~~~ 374 (502)
T PRK09281 296 RLLERAAKLSDELGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAAQ-IKA 374 (502)
T ss_pred HHHHHhhhccCCCCCccEEEEEEEECCCCCCCCcchHhhhcccceEEEEcHHHHhCCCCCccCCcccccccCCccC-CHH
Confidence 566642 566667766443 679999999987643332 11222211 0000 0 1122 245
Q ss_pred HHHHHHHHHHhhcCChh
Q 046016 987 WAKWEKQMRETLFGNAD 1003 (1112)
Q Consensus 987 w~~WEkrlRe~Ll~~~~ 1003 (1112)
+.+.-.+||.+|-.-.+
T Consensus 375 ~~~~a~~lr~~la~y~e 391 (502)
T PRK09281 375 MKKVAGTLRLDLAQYRE 391 (502)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666788887766653
No 323
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=69.90 E-value=3.6 Score=43.53 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
++|=||-.-|-.|||||||..++.-.
T Consensus 26 a~GeivtlMGPSGcGKSTLls~~~G~ 51 (213)
T COG4136 26 AKGEIVTLMGPSGCGKSTLLSWMIGA 51 (213)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhh
Confidence 78889999999999999999998433
No 324
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=69.90 E-value=3.2 Score=43.96 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||+|-|.
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~ 59 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLA 59 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999984
No 325
>PRK12288 GTPase RsgA; Reviewed
Probab=69.89 E-value=2.3 Score=47.67 Aligned_cols=20 Identities=45% Similarity=0.660 Sum_probs=18.0
Q ss_pred EEEccCCCCchhhHHHHHHH
Q 046016 779 IVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~ 798 (1112)
++.|.|.||+|||||.+-|+
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll 226 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALL 226 (347)
T ss_pred CEEEECCCCCCHHHHHHHhc
Confidence 46789999999999999985
No 326
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=69.87 E-value=3.4 Score=42.52 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~ 50 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCIN 50 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999884
No 327
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=69.84 E-value=3.2 Score=45.53 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=+|-+.|-.|||||||.+-|
T Consensus 27 ~~GEfvsilGpSGcGKSTLLrii 49 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLI 49 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 56778889999999999998887
No 328
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=69.83 E-value=3.2 Score=43.17 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~ 50 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAAL 50 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999883
No 329
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=69.82 E-value=3.4 Score=42.25 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVA 54 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999883
No 330
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=69.67 E-value=3.3 Score=46.23 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=27.2
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
+++.+-|.+|||||+|+..|....| . + .++-+|.++
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~---~--~-~vi~~D~~r 128 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLG---I--R-SVIGTDSIR 128 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC---C--C-EEEechHHH
Confidence 7788999999999999999976653 2 1 245566664
No 331
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=69.58 E-value=12 Score=40.30 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=21.6
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
|=..|=-+-+-|=||||||+||+.|.+...
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 334444445557799999999999987543
No 332
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.57 E-value=3.6 Score=41.35 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.+-|.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIA 47 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 333
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=69.57 E-value=5.7 Score=40.46 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~ 48 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLF 48 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888889999999999999984
No 334
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=69.56 E-value=3.5 Score=42.72 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-.-|-.|||||||+..++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 567789999999999999975544
No 335
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=69.52 E-value=14 Score=39.94 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=19.0
Q ss_pred EccCCCCchhhHHHHHHHhcCCC
Q 046016 781 FFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 781 FFPgIPGcaKSaLCkei~~~pgg 803 (1112)
-+.|-||||||+|+.-|+...|-
T Consensus 3 ~ivGh~~~GKTtL~~~Ll~~~g~ 25 (270)
T cd01886 3 GIIAHIDAGKTTTTERILYYTGR 25 (270)
T ss_pred EEEcCCCCCHHHHHHHHHHHcCC
Confidence 35689999999999999876554
No 336
>PRK12338 hypothetical protein; Provisional
Probab=69.51 E-value=3.5 Score=46.33 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=21.0
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+++.=|.|||||||+|++|-...
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
Confidence 678888999999999999996654
No 337
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=69.43 E-value=3.3 Score=39.13 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=17.1
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+.|-||||||+|..-+.+
T Consensus 6 v~vvG~~~~GKTsli~~l~~ 25 (165)
T cd01864 6 IILIGDSNVGKTCVVQRFKS 25 (165)
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 56779999999999988854
No 338
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=69.38 E-value=8 Score=40.53 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEccCCCCchhhHHHHHHHhcCCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
++|-|-||||||++++.+.+...+
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~ 64 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYG 64 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 478899999999999998776544
No 339
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=69.37 E-value=3.4 Score=41.41 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.+-|.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 577789999999999999999883
No 340
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=69.32 E-value=3.3 Score=43.45 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~ 58 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLG 58 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHc
Confidence 578888999999999999999884
No 341
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=69.29 E-value=3.1 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=20.2
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
-+|+-|.||||||++++.+-+..|
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg 25 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD 25 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 478899999999999999965543
No 342
>PRK07429 phosphoribulokinase; Provisional
Probab=69.23 E-value=14 Score=41.44 Aligned_cols=25 Identities=24% Similarity=0.523 Sum_probs=21.5
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+||-+-|-+||||||||+.|....+
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHhHhc
Confidence 6788889999999999999976544
No 343
>PRK10867 signal recognition particle protein; Provisional
Probab=69.22 E-value=11 Score=43.91 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=29.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKY 822 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrY 822 (1112)
+-.++.|.|.||+||||+|--|-.....- .+..|-++-.|+.+-.-
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa 144 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAA 144 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHH
Confidence 34678888999999999866654322111 02366677788777543
No 344
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=69.06 E-value=3.6 Score=41.25 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.2
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.|-++.+-|-+|||||||.+.|+..
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4677889999999999998888654
No 345
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=69.04 E-value=4.4 Score=46.75 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=18.2
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.|+| +-|-||||||+|++.|-+.
T Consensus 89 ~giL--L~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 89 KGVL--LVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CcEE--EECCCCCCHHHHHHHHHHH
Confidence 4544 4688999999999999654
No 346
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.03 E-value=3.6 Score=42.57 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999999984
No 347
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.01 E-value=3.6 Score=42.97 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||+|-|.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~ 54 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLN 54 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 578899999999999999999985
No 348
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=68.98 E-value=8.9 Score=45.94 Aligned_cols=66 Identities=20% Similarity=0.215 Sum_probs=40.4
Q ss_pred EccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHhccC
Q 046016 781 FFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMCRRT 860 (1112)
Q Consensus 781 FFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC~~t 860 (1112)
++-|-+|+|||+|+|.|+...-.. ++..|.+.|+.. + ++ ++|..-
T Consensus 438 ~I~G~tGsGKS~~~~~l~~~~~~~----------------------------~~~~v~iiD~~~---~-~~---~~~~~~ 482 (785)
T TIGR00929 438 LIFGPTGSGKTTLLNFLLAQMQKY----------------------------GGMTIFAFDKDR---G-ME---IFIRAF 482 (785)
T ss_pred EEECCCCCCHHHHHHHHHHHhhcc----------------------------CCCeEEEEeCCC---C-hH---Hhhhcc
Confidence 566999999999999985433222 223788888654 3 33 344444
Q ss_pred CccccccccCCCCCCCCcCchH
Q 046016 861 RASAVPVVPDSGGTESNPFSLD 882 (1112)
Q Consensus 861 ~A~~VPVvpdseGt~~~PFSLd 882 (1112)
+..-|-+=++ ..+.-|||.++
T Consensus 483 gG~~i~l~~~-~~~~lNPf~l~ 503 (785)
T TIGR00929 483 GGAYLEIKDG-EPFGFNPFQLE 503 (785)
T ss_pred CCEEEeccCC-CccccCCCCCC
Confidence 3333322233 45788999764
No 349
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=68.93 E-value=3.4 Score=40.26 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.6
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.|-|-||||||+|++-+++
T Consensus 3 i~vvG~~~vGKSsLi~~~~~ 22 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVH 22 (193)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 56789999999999999864
No 350
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=68.90 E-value=3.7 Score=41.49 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIA 49 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999884
No 351
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=68.90 E-value=5.9 Score=47.91 Aligned_cols=58 Identities=26% Similarity=0.437 Sum_probs=33.1
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccc-------hHHHHHHhhcCCceEEEecC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKY-------WQKVADERRRKPYSVMLADK 842 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrY-------WqkVa~eR~kkp~si~lADK 842 (1112)
|+|-|-||||||+|++.|-+.-+. ++-.+.|..+.++| ...+-++..+...+|++.|-
T Consensus 215 iLL~GppGtGKT~laraia~~~~~-----~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDE 279 (733)
T TIGR01243 215 VLLYGPPGTGKTLLAKAVANEAGA-----YFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDE 279 (733)
T ss_pred EEEECCCCCChHHHHHHHHHHhCC-----eEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeeh
Confidence 445699999999999998665432 34444444433443 23333333333345666664
No 352
>PRK10865 protein disaggregation chaperone; Provisional
Probab=68.87 E-value=6 Score=49.19 Aligned_cols=59 Identities=31% Similarity=0.527 Sum_probs=36.1
Q ss_pred ccCCCCchhhHHHHHHHhcCC------CCCCCcceecc-cccccCc-cc-------hHHHHHHh-hcCCceEEEec
Q 046016 782 FPGIPGCAKSALCKELLNAPG------GLGDNRPIHTL-MGDLTKG-KY-------WQKVADER-RRKPYSVMLAD 841 (1112)
Q Consensus 782 FPgIPGcaKSaLCkei~~~pg------g~g~~rpv~sL-mGD~iKG-rY-------WqkVa~eR-~kkp~si~lAD 841 (1112)
+.|=||||||+|+..|...-. .+- +.++-.+ +|.++.| +| ..++.++. +.....|++.|
T Consensus 204 L~G~pGvGKT~l~~~la~~i~~~~vp~~l~-~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfID 278 (857)
T PRK10865 204 LIGEPGVGKTAIVEGLAQRIINGEVPEGLK-GRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFID 278 (857)
T ss_pred EECCCCCCHHHHHHHHHHHhhcCCCchhhC-CCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEe
Confidence 449999999999998766432 121 2344444 6777765 34 34455553 33445677777
No 353
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=68.81 E-value=3.6 Score=41.81 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLM 47 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999883
No 354
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=68.80 E-value=3.5 Score=41.80 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+-|-+|||||||++-|
T Consensus 29 ~~G~~~~I~G~nGsGKStLl~~l 51 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLTLI 51 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 56888899999999999999999
No 355
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=68.78 E-value=3.6 Score=41.90 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||+|-|.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCIN 52 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999884
No 356
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=68.71 E-value=3.6 Score=43.46 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.+-|.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~ 60 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLN 60 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 678899999999999999999984
No 357
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=68.71 E-value=4.1 Score=41.32 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.1
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
.++..-|-+||||||+|+.+.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~ 24 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE 24 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3677889999999999998866
No 358
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=68.70 E-value=3.9 Score=39.42 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=21.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+.-+.+.|.||.|||+|.+-|+..
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~ 123 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNK 123 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcc
Confidence 4566778999999999999999764
No 359
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=68.66 E-value=4 Score=38.61 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=19.4
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
..-|.+-|-||||||+|.+-|..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~ 36 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLAS 36 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhc
Confidence 45578889999999999998854
No 360
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=68.66 E-value=3.8 Score=40.92 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIA 47 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 567788899999999999999983
No 361
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=68.50 E-value=3.6 Score=42.82 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||+|-|.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~la 51 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLN 51 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999983
No 362
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=68.46 E-value=3.6 Score=42.65 Aligned_cols=24 Identities=29% Similarity=0.414 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||+|-|.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLN 54 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999984
No 363
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=68.32 E-value=3.3 Score=41.96 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.3
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.|.|-.||||||||..|..
T Consensus 4 imliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 4 IMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 56789999999999999843
No 364
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=68.31 E-value=6.6 Score=42.40 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|=++-+.|-+|||||||++-|...
T Consensus 28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 67888889999999999999998543
No 365
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=68.31 E-value=3.8 Score=41.25 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=19.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.|-++-+-|-||||||+||..|.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia 40 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLA 40 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHH
Confidence 35677778999999999999974
No 366
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=68.24 E-value=3.7 Score=42.01 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~ 27 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAIL 27 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 467788899999999999999984
No 367
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=68.08 E-value=3.8 Score=41.17 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-+|||||||.+-|
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l 45 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAI 45 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 57888899999999999999988
No 368
>PRK04213 GTP-binding protein; Provisional
Probab=68.07 E-value=4.2 Score=39.99 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=19.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
...-|.+-|-||+|||+|++-+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~ 31 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTG 31 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345567789999999999999853
No 369
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=68.06 E-value=3.7 Score=41.48 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|=+|||||||.+-|.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~ 48 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAIL 48 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 370
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=68.01 E-value=3.9 Score=41.22 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
++-|.|-+|||||+||+.|.....
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 567889999999999999877543
No 371
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=68.00 E-value=3.5 Score=44.66 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=18.8
Q ss_pred EEccCCCCchhhHHHHHHHhcCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+-+-|-+|||||||++.|....+
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 45569999999999999976554
No 372
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=67.94 E-value=3.9 Score=41.24 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-.-|-+|||||||++-|.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~ 52 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLG 52 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 577788899999999999999983
No 373
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=67.83 E-value=3.7 Score=43.20 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=21.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+-|-+|||||||+|-|
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l 47 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNL 47 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 57888899999999999999987
No 374
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=67.73 E-value=4.1 Score=42.06 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.+-|.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~ 52 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLT 52 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHh
Confidence 578899999999999999999883
No 375
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=67.72 E-value=3.5 Score=38.03 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=17.6
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
.|-+.|-||||||+|.+-+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 455679999999999999864
No 376
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=67.58 E-value=4.1 Score=50.28 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=44.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIE 854 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~Ie 854 (1112)
+.|- .+.-|-+|+|||+|++.|+...... ....|.+.||..- .+
T Consensus 455 d~g~-~~i~G~tGsGKS~l~~~l~~~~~~~----------------------------~~~~v~~~D~~~s-------~~ 498 (818)
T PRK13830 455 DVGH-TLIFGPTGSGKSTLLALIAAQFRRY----------------------------AGAQIFAFDKGRS-------ML 498 (818)
T ss_pred CCCE-EEEECCCCCCHHHHHHHHHhccccc----------------------------CCCEEEEECCCCe-------EE
Confidence 3444 4667999999999999985331111 1235899999743 34
Q ss_pred HHhccCCccccccccCCC----CCCCCcCch
Q 046016 855 DMCRRTRASAVPVVPDSG----GTESNPFSL 881 (1112)
Q Consensus 855 dmC~~t~A~~VPVvpdse----Gt~~~PFSL 881 (1112)
.+|+.-+..-+-+=|+.. +.+-|||.+
T Consensus 499 ~~~~a~GG~yi~l~~g~~tg~~~l~~NPf~~ 529 (818)
T PRK13830 499 PLTLAAGGDHYEIGGDAAEEGEGLAFCPLAE 529 (818)
T ss_pred eehhhcCCEEEEecCCCCCcccccccCCccc
Confidence 455555555555545432 457899985
No 377
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=67.52 E-value=3.7 Score=43.84 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~ 54 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNIN 54 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999984
No 378
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=67.43 E-value=4 Score=42.93 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~ 57 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFN 57 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 578889999999999999999885
No 379
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=67.31 E-value=4 Score=43.36 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLN 52 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 578899999999999999999984
No 380
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=67.28 E-value=4.2 Score=41.42 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++-+-|-+|||||||.|-|..
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G 55 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISG 55 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhC
Confidence 5788889999999999999998843
No 381
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=67.19 E-value=3.2 Score=46.13 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=29.1
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
+-+-|-+|||||++|+.|...-+..|. .+.++.||-.-
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~--~v~vI~~D~yy 39 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGI--HPAVVEGDSFH 39 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCC--ceEEEeccccc
Confidence 345688999999999988776665554 57788888764
No 382
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=67.16 E-value=4.6 Score=41.19 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|-+|-+-|-.|||||||.+.|+
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 678889999999999999999885
No 383
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.15 E-value=3.9 Score=42.16 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|=+|||||||.+-|.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSIN 50 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999885
No 384
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.05 E-value=4 Score=42.12 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||+|-|.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 385
>PRK00098 GTPase RsgA; Reviewed
Probab=67.04 E-value=3.8 Score=44.52 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.0
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
|-++.|.|.||+|||+|.+-|+.
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAP 186 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhC
Confidence 45788999999999999999853
No 386
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.95 E-value=4.1 Score=41.28 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.|-|.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~ 51 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIA 51 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999984
No 387
>PHA03135 thymidine kinase; Provisional
Probab=66.87 E-value=4.3 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=19.5
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
=+.|||=|.-|+||||+++.+..
T Consensus 10 ~~rIYlDG~~GvGKTT~~~~l~~ 32 (343)
T PHA03135 10 LIRVYLDGPFGIGKTSMLNEMPD 32 (343)
T ss_pred EEEEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999988743
No 388
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=66.87 E-value=4.3 Score=40.21 Aligned_cols=24 Identities=42% Similarity=0.452 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~ 46 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLA 46 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999984
No 389
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=66.86 E-value=5.8 Score=47.62 Aligned_cols=48 Identities=29% Similarity=0.370 Sum_probs=31.5
Q ss_pred CCCCCccccccCCCCCCccccccccCCCcEEEEccCCCCchhhHHHHHHH
Q 046016 749 DEEGDLETEREAPPSSPRQAKDEVQKDEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 749 deEgdl~~~r~~~p~sp~~~~d~v~k~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
+|..+++..+.+...+|.+...- .|+ =+-|=|+|+|..|||++.+.|+
T Consensus 288 ~e~~~v~~~~~~s~~~~~~t~~~-~~~-~vtVG~VGYPNVGKSSTINaLv 335 (562)
T KOG1424|consen 288 EEIEDVEQLRLISAMEPTPTGER-YKD-VVTVGFVGYPNVGKSSTINALV 335 (562)
T ss_pred cchhhHHhhhhhhccccCCCCcC-CCc-eeEEEeecCCCCchhHHHHHHh
Confidence 45566666666655554442100 223 4677899999999999999884
No 390
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.76 E-value=4.5 Score=40.01 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.|-|.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~ 47 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIA 47 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999984
No 391
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=66.72 E-value=20 Score=44.81 Aligned_cols=85 Identities=19% Similarity=0.258 Sum_probs=47.0
Q ss_pred ceEEeeeeccCCCCCcccccHHHHHHHHhcCCCCCceEeeeccchHHHHHHHHHHHHhcCCchhhhhhhccccccccCCC
Q 046016 320 YAVVTAVTELGNGKPKFYSTPEIIAFCRKWRLPTNHVWLFSTRKSVTSFFAAYDALCEEGTATSVCKALDDVADISVPGS 399 (1112)
Q Consensus 320 Y~VvTAvteL~ngkP~FysT~e~i~fCrkwrLPtNhvWlfstrksatsfFaAyDaLcEeG~aT~V~k~Ldeiadi~vpgs 399 (1112)
|+++|=-+.-- +-++| .+-.+||..-+|-- .--++.+..|..+.+ -+.+-|++...+++-=.
T Consensus 112 ~l~~t~~~~~~--~~~~~---~~~~~~~~~~~~~~----~~d~~~~~~f~~~v~---------~~~~~~~~~~~~~~~~l 173 (829)
T TIGR03783 112 YLFLTKTTKER--SRQQS---NFSTLCRGTLLPKE----VRDKDTVRRFLEAVE---------QFERIMNDSGFIRLRRL 173 (829)
T ss_pred EEEEEecchhh--hcccc---chhhhhhcccCccc----cCCHHHHHHHHHHHH---------HHHHHHhhcCceeeeec
Confidence 67777444211 12233 34568999988821 002345666644432 35566666666666555
Q ss_pred Ccccchhhhhhceeeeeeecccc
Q 046016 400 KDHIQVQGEILEGLVARIVSHEC 422 (1112)
Q Consensus 400 ~~H~~~QGeILEGLVaR~V~~~s 422 (1112)
..+.-..-+-.+|+|-|+.+-.-
T Consensus 174 ~~~~~~~~~~~~~~~~~y~~~~~ 196 (829)
T TIGR03783 174 TTDEITGTDERPGLVEKYLSLSL 196 (829)
T ss_pred chhhhccchhhhhHHHHHhcccC
Confidence 55544444556788888875443
No 392
>PRK06620 hypothetical protein; Validated
Probab=66.65 E-value=4.2 Score=42.39 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.2
Q ss_pred EEccCCCCchhhHHHHHHHhcCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+|+=|=||||||+|++.+.+.++
T Consensus 47 l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred EEEECCCCCCHHHHHHHHHhccC
Confidence 57789999999999998766553
No 393
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=66.54 E-value=4.3 Score=40.87 Aligned_cols=24 Identities=38% Similarity=0.310 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~ 51 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLA 51 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 577788889999999999999884
No 394
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=66.28 E-value=4.4 Score=41.89 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=19.3
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
|+-|.|.+|||||||.+.|+...
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHH
Confidence 67788999999999988877543
No 395
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=66.26 E-value=4.2 Score=43.13 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+-|-+|||||||++-|
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i 48 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHF 48 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 68889999999999999999988
No 396
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=66.25 E-value=4.2 Score=37.86 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.8
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
+.+-|-||||||+|++-+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 4 LVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 567799999999999988653
No 397
>PRK10908 cell division protein FtsE; Provisional
Probab=66.21 E-value=4.4 Score=41.11 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.+-|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999983
No 398
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=66.14 E-value=3.8 Score=39.90 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=20.6
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
+-.++.-|-.|||||+|++++++..-.
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~ 46 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKE 46 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhh
Confidence 344555599999999999999886633
No 399
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=66.08 E-value=4.4 Score=43.14 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=19.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-++..-|-||||||+||-.++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~ 58 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAV 58 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356677889999999999998754
No 400
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=66.03 E-value=4.2 Score=38.34 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=17.1
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
+.+-|-||||||+|..-+.+
T Consensus 5 i~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 5 LLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 56779999999999988864
No 401
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=66.03 E-value=4.5 Score=41.69 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.2
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHH
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
=.+|=++-+-|-+|||||||+|-|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~ 47 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIA 47 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3688888999999999999999984
No 402
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=66.00 E-value=4.2 Score=48.24 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=23.6
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.|.++-+-|-+|||||++|+.|-+.-
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 77899999999999999999997665
No 403
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=66.00 E-value=4.2 Score=38.94 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=17.5
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+.|-||||||+|++-+..
T Consensus 5 i~vvG~~~vGKTsli~~~~~ 24 (170)
T cd04115 5 IIVIGDSNVGKTCLTYRFCA 24 (170)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67889999999999998853
No 404
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=66.00 E-value=3.9 Score=34.18 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=39.8
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHH-HHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQ-IEDMCR 858 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~-IedmC~ 858 (1112)
++|-|.+|.|||++|..+.......|. +++.-| .+++.|-..-... ... ....+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----~v~~~~-------------------d~iivD~~~~~~~-~~~~~~~~~~ 57 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK----RVLLID-------------------DYVLIDTPPGLGL-LVLLCLLALL 57 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC----eEEEEC-------------------CEEEEeCCCCccc-hhhhhhhhhh
Confidence 567789999999999988665544332 223333 6666665532211 110 123444
Q ss_pred cCCccccccccCCCC
Q 046016 859 RTRASAVPVVPDSGG 873 (1112)
Q Consensus 859 ~t~A~~VPVvpdseG 873 (1112)
......+|+-|+...
T Consensus 58 ~~~~vi~v~~~~~~~ 72 (99)
T cd01983 58 AADLVIIVTTPEALA 72 (99)
T ss_pred hCCEEEEecCCchhh
Confidence 555566777666543
No 405
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.91 E-value=4.6 Score=39.74 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+-|-+|||||||.+-|
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l 46 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKII 46 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 57888888999999999999988
No 406
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=65.81 E-value=4.6 Score=40.91 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~ 55 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLY 55 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999883
No 407
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=65.79 E-value=12 Score=41.49 Aligned_cols=69 Identities=26% Similarity=0.357 Sum_probs=42.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCccee---ccccc-ccCccchHHHHHHhhcCCceEEEecCCC---CCh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIH---TLMGD-LTKGKYWQKVADERRRKPYSVMLADKNA---PNE 847 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~---sLmGD-~iKGrYWqkVa~eR~kkp~si~lADKNa---P~~ 847 (1112)
.+|-.+=..|=.|||||||++-|+ |..+|-. .+.|. +.+.+==. -..+++..+.=|--. |--
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~------Gl~~p~~G~I~~~G~~~~~~~~~~-----~~~~~VQmVFQDp~~SLnP~~ 99 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLA------GLEKPSSGSILLDGKPLAPKKRAK-----AFYRPVQMVFQDPYSSLNPRR 99 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHh------cccCCCCceEEECCcccCccccch-----hhccceeEEecCCccccCcch
Confidence 567777778999999999999983 3333322 23342 22211000 224677778877655 777
Q ss_pred hHHHHHH
Q 046016 848 EVWRQIE 854 (1112)
Q Consensus 848 ~vWr~Ie 854 (1112)
.||+.|.
T Consensus 100 tv~~~l~ 106 (252)
T COG1124 100 TVGRILS 106 (252)
T ss_pred hHHHHHh
Confidence 7777764
No 408
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=65.70 E-value=4.4 Score=42.69 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~ 67 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLN 67 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 578888899999999999999883
No 409
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=65.68 E-value=4 Score=40.34 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
.=+.+-|-+||||||||.-+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~ 27 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVG 27 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhc
Confidence 4567889999999999999865
No 410
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=65.66 E-value=4.6 Score=44.44 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.4
Q ss_pred cEEEEccCCCCchhhHHHHHHH
Q 046016 777 GLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.-++.+-|.+|||||++++.|.
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 3478889999999999999995
No 411
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=65.65 E-value=4.3 Score=43.56 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (290)
T PRK13634 31 PSGSYVAIIGHTGSGKSTLLQHLN 54 (290)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 578888999999999999999984
No 412
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=65.48 E-value=4.2 Score=40.91 Aligned_cols=20 Identities=25% Similarity=0.390 Sum_probs=17.4
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
+-+-|-+|+|||+|++.|..
T Consensus 4 I~i~G~~g~GKSSLin~L~g 23 (197)
T cd04104 4 IAVTGESGAGKSSFINALRG 23 (197)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 45779999999999999964
No 413
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=65.47 E-value=4.4 Score=44.67 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++-+.|-+|||||||++-|+.
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~G 64 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMG 64 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHc
Confidence 5777889999999999999999965
No 414
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.41 E-value=4.5 Score=42.22 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 415
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=65.33 E-value=4.8 Score=40.21 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILA 47 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999883
No 416
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.32 E-value=4.7 Score=42.32 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++-+-|-+|||||||++-|.-
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5788888999999999999999843
No 417
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=65.23 E-value=3.3 Score=44.19 Aligned_cols=64 Identities=23% Similarity=0.377 Sum_probs=44.0
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc-------cchHHHHHHhhcCCceEEEecCCCCChhHH
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG-------KYWQKVADERRRKPYSVMLADKNAPNEEVW 850 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG-------rYWqkVa~eR~kkp~si~lADKNaP~~~vW 850 (1112)
-|+|.-|=|||||=|.|.-|...-| .+|.=+||+++- .||..|.+-=+.+ +=+|.+.+-
T Consensus 9 ~IifVlGGPGsgKgTqC~kiv~ky~------ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G--------~iVP~ei~~ 74 (195)
T KOG3079|consen 9 PIIFVLGGPGSGKGTQCEKIVEKYG------FTHLSAGDLLRAEIASAGSERGALIKEIIKNG--------DLVPVEITL 74 (195)
T ss_pred CEEEEEcCCCCCcchHHHHHHHHcC------ceeecHHHHHHHHHccccChHHHHHHHHHHcC--------CcCcHHHHH
Confidence 4788889999999999999865544 589999999862 4666665544332 223555555
Q ss_pred HHHHH
Q 046016 851 RQIED 855 (1112)
Q Consensus 851 r~Ied 855 (1112)
..+++
T Consensus 75 ~LL~~ 79 (195)
T KOG3079|consen 75 SLLEE 79 (195)
T ss_pred HHHHH
Confidence 55544
No 418
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.22 E-value=4.5 Score=42.68 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+-|-+|||||||+|-|
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l 54 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSL 54 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 57778888999999999999988
No 419
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=65.22 E-value=4.9 Score=40.79 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMIT 47 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999884
No 420
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=65.14 E-value=5.1 Score=39.57 Aligned_cols=23 Identities=22% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
++.+-|.+|||||+|++.+++..
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~ 24 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQ 24 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcc
Confidence 45678999999999999988764
No 421
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=65.11 E-value=4.8 Score=42.44 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~ 66 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLN 66 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 578888899999999999999984
No 422
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=65.08 E-value=4.6 Score=42.10 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.+-|.
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~ 59 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLN 59 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 578888999999999999999884
No 423
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=64.92 E-value=4.7 Score=43.06 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.+-|.
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~ 71 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIG 71 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 588889999999999999999984
No 424
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=64.74 E-value=4.5 Score=45.90 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=19.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
..|=.+.|.|-.|||||||.+-|
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~I 49 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMI 49 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 45667778899999999998887
No 425
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=64.72 E-value=4.4 Score=47.12 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++.+.|-.|||||||+|-|+.
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhc
Confidence 5677888999999999999999854
No 426
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=64.66 E-value=4.6 Score=38.60 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=17.3
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
+.+.|-||||||+|++-+.+
T Consensus 7 i~ivG~~~vGKTsli~~~~~ 26 (180)
T cd04127 7 FLALGDSGVGKTSFLYQYTD 26 (180)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 56789999999999988854
No 427
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=64.64 E-value=4.7 Score=42.51 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.+-|.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIG 54 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999883
No 428
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.58 E-value=4.8 Score=41.46 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|=+|||||||+|-|.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~ 51 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAIN 51 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999984
No 429
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=64.57 E-value=4.8 Score=42.29 Aligned_cols=24 Identities=46% Similarity=0.681 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~ 58 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLL 58 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 678889999999999999999883
No 430
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=64.55 E-value=5 Score=42.05 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
+++.+-|-+|||||++++.|....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~ 26 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKL 26 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467788999999999999996543
No 431
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=64.50 E-value=5.3 Score=40.59 Aligned_cols=24 Identities=29% Similarity=0.618 Sum_probs=20.2
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|=++.+-|-||||||+||..+..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 466888889999999999988653
No 432
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=64.49 E-value=5 Score=40.37 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||+|-|.
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~ 56 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALA 56 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578888889999999999999984
No 433
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=64.47 E-value=3.6 Score=44.51 Aligned_cols=31 Identities=6% Similarity=0.099 Sum_probs=23.1
Q ss_pred HHHHHHHhcCcEeeecccCCCCCCchhHHHHHHhhhh
Q 046016 928 DGELVERFGSLIKMPLLKDDRSPLPDHVRSVLEEGIS 964 (1112)
Q Consensus 928 ~seL~~rF~~lVkmPllk~dr~~lP~~v~~~l~eGl~ 964 (1112)
..+|..||...|++|-+. |+|+..++.--+.
T Consensus 179 np~L~sR~~~~i~fp~l~------~edl~~I~~~~l~ 209 (284)
T TIGR02880 179 NPGFSSRVAHHVDFPDYS------EAELLVIAGLMLK 209 (284)
T ss_pred CHHHHhhCCcEEEeCCcC------HHHHHHHHHHHHH
Confidence 367888999999999986 5777776554443
No 434
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=64.47 E-value=6.1 Score=34.89 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=16.2
Q ss_pred cCCCCchhhHHHHHHHhcC
Q 046016 783 PGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 783 PgIPGcaKSaLCkei~~~p 801 (1112)
-|-+|+|||+|++-|.+..
T Consensus 2 ~G~~gsGKstl~~~l~~~~ 20 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQE 20 (163)
T ss_pred cCCCCCCHHHHHHHHhCcc
Confidence 4889999999999987653
No 435
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=64.46 E-value=4.6 Score=43.25 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=+|-+-|-+|||||||++-|.
T Consensus 30 ~~Ge~v~i~G~nGsGKSTLl~~l~ 53 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLN 53 (288)
T ss_pred cCCCEEEEECCCCChHHHHHHHHh
Confidence 578888999999999999999983
No 436
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=64.44 E-value=4.8 Score=37.18 Aligned_cols=97 Identities=22% Similarity=0.200 Sum_probs=51.1
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHHHHHhcc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQIEDMCRR 859 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~IedmC~~ 859 (1112)
|.+-|-||+|||+|.+-+....-. . ....-.+|.... .+ ....+.+.+.+.|- |..+-|..+.+.+-+
T Consensus 3 i~~~G~~~~GKTsl~~~l~~~~~~--~--~~~~~~~~~~~~----~~--~~~~~~~~~~i~D~--~g~~~~~~~~~~~~~ 70 (164)
T cd04139 3 VIVVGAGGVGKSALTLQFMYDEFV--E--DYEPTKADSYRK----KV--VLDGEDVQLNILDT--AGQEDYAAIRDNYHR 70 (164)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCc--c--ccCCcchhhEEE----EE--EECCEEEEEEEEEC--CChhhhhHHHHHHhh
Confidence 457799999999998887642210 0 000011121110 00 01223466777774 433457777777666
Q ss_pred CCccccccccCCCCCCCCcCchHHHHHHHHHHhh
Q 046016 860 TRASAVPVVPDSGGTESNPFSLDALAVFMFRVLE 893 (1112)
Q Consensus 860 t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~ 893 (1112)
.....|-|+.-+ .|-|++.+.-.+..++.
T Consensus 71 ~~~~~i~v~d~~-----~~~s~~~~~~~~~~~~~ 99 (164)
T cd04139 71 SGEGFLLVFSIT-----DMESFTATAEFREQILR 99 (164)
T ss_pred cCCEEEEEEECC-----CHHHHHHHHHHHHHHHH
Confidence 666566555322 34456666665555554
No 437
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.43 E-value=4.9 Score=42.14 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 40 ~~Ge~~~i~G~nGsGKSTLl~~l~ 63 (265)
T PRK14252 40 HEKQVTALIGPSGCGKSTFLRCFN 63 (265)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999984
No 438
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=64.41 E-value=4.6 Score=42.99 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||+|-|.
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~ 58 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTN 58 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHh
Confidence 578788899999999999999984
No 439
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=64.41 E-value=5 Score=41.28 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~ 32 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLIS 32 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 467788999999999999999984
No 440
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=64.33 E-value=4.5 Score=39.48 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=17.2
Q ss_pred EEccCCCCchhhHHHHHHH
Q 046016 780 VFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~ 798 (1112)
|+|-|-||+|||+|++-|.
T Consensus 4 i~~iG~~~~GKstl~~~l~ 22 (158)
T PRK15467 4 IAFVGAVGAGKTTLFNALQ 22 (158)
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 6789999999999999974
No 441
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=64.31 E-value=4.7 Score=43.09 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.|-|.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~la 48 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALA 48 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999884
No 442
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.25 E-value=4.8 Score=42.76 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||+|-|.
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 567788899999999999999884
No 443
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=64.24 E-value=5.9 Score=48.91 Aligned_cols=78 Identities=23% Similarity=0.372 Sum_probs=44.3
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCC---------CCCCcceecccccccCc--cchH--HHHHHhhcCCceEEEecC--C
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGG---------LGDNRPIHTLMGDLTKG--KYWQ--KVADERRRKPYSVMLADK--N 843 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg---------~g~~rpv~sLmGD~iKG--rYWq--kVa~eR~kkp~si~lADK--N 843 (1112)
.++|-|-||||||.|++.|-+..+. +...+.+.-|.|.. .| .|.+ .+.+.=+++|.+|+|.|- .
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~-~gyvg~~~~g~L~~~v~~~p~sVlllDEiek 568 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCC-CCcccccccchHHHHHHhCCCcEEEeccHhh
Confidence 4688999999999999988665531 01111222233321 11 1221 133333567889999874 2
Q ss_pred CCChhHHHHHHHHhc
Q 046016 844 APNEEVWRQIEDMCR 858 (1112)
Q Consensus 844 aP~~~vWr~IedmC~ 858 (1112)
+++ +||..+-.+-.
T Consensus 569 a~~-~v~~~LLq~ld 582 (758)
T PRK11034 569 AHP-DVFNLLLQVMD 582 (758)
T ss_pred hhH-HHHHHHHHHHh
Confidence 344 67777665543
No 444
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=64.19 E-value=4.9 Score=37.58 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=16.8
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+-|-||+|||+|++-+.+
T Consensus 3 i~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 3 LVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 45669999999999998864
No 445
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.16 E-value=4.9 Score=43.47 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+.|-+|||||||++-|.
T Consensus 69 ~~Ge~~~IvG~nGsGKSTLl~~L~ 92 (305)
T PRK14264 69 PEKSVTALIGPSGCGKSTFLRCLN 92 (305)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999984
No 446
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=64.14 E-value=5.7 Score=42.33 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=25.2
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGL 804 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~ 804 (1112)
.|+|+.+-|-.|+|||||||.|++.. ++
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l 30 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KL 30 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-Ce
Confidence 69999999999999999999998877 44
No 447
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=64.13 E-value=4.9 Score=41.92 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~ 51 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLS 51 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 577788889999999999999884
No 448
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=64.10 E-value=11 Score=45.91 Aligned_cols=81 Identities=22% Similarity=0.414 Sum_probs=47.3
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCC---------CCCCcceecccccccCccchH-----HHHHHhhcCCceEEEecCCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGG---------LGDNRPIHTLMGDLTKGKYWQ-----KVADERRRKPYSVMLADKNA 844 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg---------~g~~rpv~sLmGD~iKGrYWq-----kVa~eR~kkp~si~lADKNa 844 (1112)
.+.|-|-||||||.|++.|-...+. +...+++..|.|... | |.- .+.+.=+++|++|+|.|.=-
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~-g-yvg~~~~~~l~~~~~~~p~~VvllDEie 563 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPP-G-YVGFEQGGLLTEAVRKHPHCVLLLDEIE 563 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCC-C-CcccchhhHHHHHHHhCCCeEEEEechh
Confidence 3679999999999999998766532 111122223333221 1 211 13333346899999988522
Q ss_pred -CChhHHHHHHHHhccCC
Q 046016 845 -PNEEVWRQIEDMCRRTR 861 (1112)
Q Consensus 845 -P~~~vWr~IedmC~~t~ 861 (1112)
-..+++..+-.+.....
T Consensus 564 ka~~~~~~~Ll~~ld~g~ 581 (731)
T TIGR02639 564 KAHPDIYNILLQVMDYAT 581 (731)
T ss_pred hcCHHHHHHHHHhhccCe
Confidence 22267777777776543
No 449
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.98 E-value=5.2 Score=40.48 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=20.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-.-|-+|||||||.+-|.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~ 54 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALA 54 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhc
Confidence 567788889999999999999884
No 450
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.98 E-value=5 Score=42.25 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|=+|||||||++-|.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~ 56 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMI 56 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888889999999999999984
No 451
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=63.92 E-value=4.9 Score=42.46 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~la 72 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFN 72 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 578888999999999999999984
No 452
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=63.91 E-value=4.8 Score=46.06 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|-.+.+.|-.|||||||+|-|.
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~ 369 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLL 369 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999984
No 453
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=63.86 E-value=5 Score=42.42 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-.-|-+|||||||++-|.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~ 54 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALM 54 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999883
No 454
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=63.83 E-value=3.9 Score=44.40 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=19.2
Q ss_pred EccCCCCc---hhhHHHHHHHhcCCCCC
Q 046016 781 FFPGIPGC---AKSALCKELLNAPGGLG 805 (1112)
Q Consensus 781 FFPgIPGc---aKSaLCkei~~~pgg~g 805 (1112)
+..||.|| |||||||.+...-+|..
T Consensus 5 ~ivgiSG~TnsGKTTLak~l~~~f~~~~ 32 (225)
T KOG3308|consen 5 LIVGISGCTNSGKTTLAKSLHRFFPGCS 32 (225)
T ss_pred EEEEeecccCCCHhHHHHHHHHHccCCe
Confidence 44566665 99999999988777753
No 455
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=63.71 E-value=12 Score=43.60 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=49.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC-CCCCCCcceecccccccCccchHHHHHHhhcCCceEEEecCCCCChhHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP-GGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSVMLADKNAPNEEVWRQI 853 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p-gg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNaP~~~vWr~I 853 (1112)
.+|=++-|.|-+|||||||++-|...- -..|. ..+....-|..+=-|++.+..--+.-.+.+..++. +.+++..+
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~-~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~---~~dl~~al 264 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGA-DKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKD---IADLQLML 264 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecCCcchhHHHHHHHHHHHcCCceecCCC---HHHHHHHH
Confidence 356688899999999999988664311 01111 13455555665544554443333322344444433 44677777
Q ss_pred HHHhccCCccccccccCCCC
Q 046016 854 EDMCRRTRASAVPVVPDSGG 873 (1112)
Q Consensus 854 edmC~~t~A~~VPVvpdseG 873 (1112)
..+-+. =-|+-|..|
T Consensus 265 ~~l~~~-----d~VLIDTaG 279 (420)
T PRK14721 265 HELRGK-----HMVLIDTVG 279 (420)
T ss_pred HHhcCC-----CEEEecCCC
Confidence 765432 235566655
No 456
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=63.65 E-value=5.1 Score=41.79 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-+|||||||++-|
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l 42 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARM 42 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 57889999999999999999988
No 457
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=63.61 E-value=5.2 Score=43.05 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++-+-|-+|||||||.|-|..
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhC
Confidence 5788899999999999999999853
No 458
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=63.57 E-value=16 Score=43.52 Aligned_cols=199 Identities=17% Similarity=0.217 Sum_probs=106.1
Q ss_pred CCcEEEEccCCCCchhhHHH-HHHHhcCCCCCCCcc-eecccccccC--ccchHHHHHHhhcCCceEEEecCCCCChhHH
Q 046016 775 DEGLIVFFPGIPGCAKSALC-KELLNAPGGLGDNRP-IHTLMGDLTK--GKYWQKVADERRRKPYSVMLADKNAPNEEVW 850 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLC-kei~~~pgg~g~~rp-v~sLmGD~iK--GrYWqkVa~eR~kkp~si~lADKNaP~~~vW 850 (1112)
..|==+-..|=+|+|||+|+ ..|.|. . ..|.. |-.++|..-+ -.+|......-.-+...|.+|--|-|+..
T Consensus 159 grGQr~~I~g~~g~GKt~Lal~~i~~~-~--~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~-- 233 (501)
T TIGR00962 159 GRGQRELIIGDRQTGKTAVAIDTIINQ-K--DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASL-- 233 (501)
T ss_pred ccCCEEEeecCCCCCccHHHHHHHHhh-c--CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHH--
Confidence 33333344577899999996 445553 2 23333 4477887544 25666666544445667778888888876
Q ss_pred HHHHHHhccCCcc-------ccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCCc
Q 046016 851 RQIEDMCRRTRAS-------AVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGKS 923 (1112)
Q Consensus 851 r~IedmC~~t~A~-------~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k~ 923 (1112)
|-+....+.|.|- -|-+|-|+ +-.+-=.+.-+++-+=|.=-|...|| . +||
T Consensus 234 r~~a~~~a~aiAEyfrd~G~~VLlv~Dd--ltr~A~A~REisl~lgepP~~~gYP~----------~---vf~------- 291 (501)
T TIGR00962 234 QYLAPYTGCTMAEYFRDNGKHALIIYDD--LSKHAVAYRQISLLLRRPPGREAYPG----------D---VFY------- 291 (501)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEecc--hHHHHHHHHHHHHhcCCCCcccCcCc----------h---HHH-------
Confidence 5555666665553 57777777 22221112222222222222222332 2 344
Q ss_pred hhhhHHHHHHHh---------cCcEeeecccCC----CCCCchhHHHHHHhhhhh-hhhccccc----Cccc-----cCC
Q 046016 924 RKEFDGELVERF---------GSLIKMPLLKDD----RSPLPDHVRSVLEEGISW-YKLHTSKH----GRLE-----STK 980 (1112)
Q Consensus 924 r~ef~seL~~rF---------~~lVkmPllk~d----r~~lP~~v~~~l~eGl~l-~~~h~~~~----gr~E-----~tk 980 (1112)
..+.|.||= ||+=-+|+.-.. ..|+|+.+.+|++-=|=| -.++.+.| ..+. -.+
T Consensus 292 ---~~srLlERag~~~~~~g~GSITal~~V~~~~dD~s~pI~~~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~ 368 (501)
T TIGR00962 292 ---LHSRLLERAAKLNDEKGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGA 368 (501)
T ss_pred ---HHHHHHHHHhhccCCCCCcceEEEEEEECCCCCCCCcchHhhhhhcceEEEEcHhHHhCCCCCccCCccchhccCcc
Confidence 345566652 566667766543 679999999987643322 11221111 0011 011
Q ss_pred CCchhHHHHHHHHHHHhhcCChhh
Q 046016 981 GSYAQEWAKWEKQMRETLFGNADY 1004 (1112)
Q Consensus 981 gsy~~ew~~WEkrlRe~Ll~~~~~ 1004 (1112)
.+. +++.+.-.++|.+|-...+.
T Consensus 369 ~~~-~~~~~~a~~lr~~la~y~e~ 391 (501)
T TIGR00962 369 AQI-KAMKQVAGSLRLELAQYREL 391 (501)
T ss_pred ccC-HHHHHHHHHHHHHHHHHHHH
Confidence 222 45666777888887766643
No 459
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.51 E-value=9.2 Score=48.55 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=24.1
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCC-C-CCcceecc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGL-G-DNRPIHTL 813 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~-g-~~rpv~sL 813 (1112)
..|-|-||||||+|++.+.+...+- + +..||..|
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 4578999999999999988766542 2 22355544
No 460
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=63.36 E-value=5.8 Score=39.70 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=21.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
..+-.|++-|-||||||+|+..+.+.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34557788899999999999888664
No 461
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=63.32 E-value=5.1 Score=42.24 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~ 60 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLA 60 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHh
Confidence 578888999999999999999983
No 462
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=63.30 E-value=4.5 Score=39.12 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=16.7
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
+..-|-||||||+||-.++..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 445699999999999887553
No 463
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=63.29 E-value=5.2 Score=44.62 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=22.9
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.|.++-|.|.+|+|||||++.|+....
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 478899999999999999998876543
No 464
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=63.28 E-value=4.2 Score=48.90 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.9
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
..+++.+.|.||+|||++++.|-.+.
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l 239 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYF 239 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHH
Confidence 46789999999999999999997764
No 465
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.24 E-value=5.1 Score=42.32 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++..-|-+|||||||++-|.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~ 54 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLN 54 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999983
No 466
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=63.12 E-value=5.1 Score=38.14 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.2
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+-|-||||||+|++-+.+
T Consensus 6 i~vvG~~~~GKSsl~~~~~~ 25 (167)
T cd01867 6 LLLIGDSGVGKSCLLLRFSE 25 (167)
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 56789999999999988864
No 467
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=63.12 E-value=5.4 Score=42.97 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~ 51 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLL 51 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999984
No 468
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=63.12 E-value=5.4 Score=40.95 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~ 50 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVV 50 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578888899999999999999984
No 469
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=62.95 E-value=5.4 Score=43.82 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|=++-+.|=.|||||||++-|...
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcc
Confidence 57778889999999999999998643
No 470
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=62.88 E-value=5.2 Score=37.30 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.7
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|-+-|.||||||+|++-+...
T Consensus 3 i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 3 VTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred EEEEecCCCCHHHHHHHHHhc
Confidence 456799999999999998653
No 471
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=62.83 E-value=5.4 Score=40.93 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLA 48 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHc
Confidence 578888899999999999999883
No 472
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=62.80 E-value=5.4 Score=40.44 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|=+|||||||++-|.
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~ 61 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLE 61 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999883
No 473
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=62.78 E-value=5.4 Score=41.47 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.+-|.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~ 49 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFA 49 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999983
No 474
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=62.74 E-value=5.6 Score=39.47 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=20.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~ 47 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALF 47 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 467778888999999999999984
No 475
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.72 E-value=5.6 Score=39.09 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++..-|-+|||||||.+-|..
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G 50 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLR 50 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHc
Confidence 5788888899999999999999843
No 476
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=62.72 E-value=5 Score=43.72 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=23.2
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.|--|++.|-||||||.|.+.+-..-|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~ 68 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALG 68 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhC
Confidence 455678999999999999999987777
No 477
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=62.71 E-value=5.5 Score=42.59 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=21.8
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+.-++|..+|.|+.|||.+|+-|..+.-
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~ 37 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLN 37 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45678999999999999999999866443
No 478
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=62.69 E-value=5.2 Score=41.93 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.+-|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~ 49 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALS 49 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999984
No 479
>PRK13796 GTPase YqeH; Provisional
Probab=62.66 E-value=6.3 Score=44.22 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
-|+|.|.||+|||||.+-|+..-
T Consensus 162 ~v~vvG~~NvGKSTLiN~L~~~~ 184 (365)
T PRK13796 162 DVYVVGVTNVGKSTLINRIIKEI 184 (365)
T ss_pred eEEEEcCCCCcHHHHHHHHHhhc
Confidence 47899999999999999998654
No 480
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=62.57 E-value=5.7 Score=38.46 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+-|-+|||||||.+-|
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l 46 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLI 46 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 67788888999999999999988
No 481
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=62.47 E-value=8.9 Score=45.09 Aligned_cols=94 Identities=18% Similarity=0.149 Sum_probs=60.5
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC--ccchHHHHHHhhcCCceEEEecCCCCChhHH
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK--GKYWQKVADERRRKPYSVMLADKNAPNEEVW 850 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK--GrYWqkVa~eR~kkp~si~lADKNaP~~~vW 850 (1112)
+=..|=.+-+.|-+|||||+|.+.|.. ....+.-|-.++|-+-+ ..||.+...+..-+...|.++--|-|+.+=+
T Consensus 158 ~i~~GqrigI~G~sG~GKSTLL~~I~~---~~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~ 234 (444)
T PRK08972 158 TVGKGQRMGLFAGSGVGKSVLLGMMTR---GTTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRL 234 (444)
T ss_pred EEcCCCEEEEECCCCCChhHHHHHhcc---CCCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHH
Confidence 335566667779999999999999964 33334445567776654 2477776555444556677788888887644
Q ss_pred HHHHHHhccCCcc-------ccccccCC
Q 046016 851 RQIEDMCRRTRAS-------AVPVVPDS 871 (1112)
Q Consensus 851 r~IedmC~~t~A~-------~VPVvpds 871 (1112)
+ ......|.|- -|-++-||
T Consensus 235 ~--a~~~A~tiAEyfrd~G~~VLl~~Ds 260 (444)
T PRK08972 235 K--GCETATTIAEYFRDQGLNVLLLMDS 260 (444)
T ss_pred H--HHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4 3333333332 56777777
No 482
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=62.42 E-value=5.4 Score=42.74 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 63 ~~Ge~~~l~G~nGsGKSTLl~~L~ 86 (286)
T PRK14275 63 LSKYVTAIIGPSGCGKSTFLRAIN 86 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 577788889999999999999983
No 483
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=62.42 E-value=5.6 Score=40.62 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||++-|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQ 49 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578788899999999999999984
No 484
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=62.41 E-value=4.9 Score=49.02 Aligned_cols=81 Identities=30% Similarity=0.402 Sum_probs=53.6
Q ss_pred CCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCCchhh--h----HHHHHHHhcC---------
Q 046016 873 GTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGKSRKE--F----DGELVERFGS--------- 937 (1112)
Q Consensus 873 Gt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k~r~e--f----~seL~~rF~~--------- 937 (1112)
|.+.-|-.|+.+|. |-||.|..-|-++| ++-=-.||+|.+..| + ..|+++-.|.
T Consensus 353 ~~hiAPhtle~aA~--faVLTRL~~p~~~~---------l~~KmklYdGe~~~~~~~~~~~~~E~rd~a~~~EGm~GiS~ 421 (644)
T PRK15455 353 HAPCAPGTLEMLAR--FSVLSRLKEPENSS---------IYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMNGLST 421 (644)
T ss_pred CCCcCccHHHHHHH--HHHHhcCCCCCcCC---------HHHHHHhhcccccccCCCCcccHHHHHhhcCCCCCCCCCCH
Confidence 77888999999884 57999998776755 666678999987722 2 4455554431
Q ss_pred --cEe-e-ecccCC---CCCCchhHHHHHHhhhh
Q 046016 938 --LIK-M-PLLKDD---RSPLPDHVRSVLEEGIS 964 (1112)
Q Consensus 938 --lVk-m-Pllk~d---r~~lP~~v~~~l~eGl~ 964 (1112)
+++ | -+|-.| ...=|.+|...|++||.
T Consensus 422 Rf~~~~ls~a~~~~~~~~~~nP~~~l~~Le~~i~ 455 (644)
T PRK15455 422 RFAFKILSRVFNFDHTEVAANPVHLMYVLEQQIE 455 (644)
T ss_pred HHHHHHHHHHHccCcccccCCHHHHHHHHHHHHh
Confidence 111 0 112222 24568899999999887
No 485
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=62.38 E-value=5.9 Score=42.70 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~ 49 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIIT 49 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHh
Confidence 688889999999999999999884
No 486
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=62.34 E-value=5.8 Score=40.01 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~ 47 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIM 47 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHh
Confidence 678888999999999999999984
No 487
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=62.33 E-value=5.8 Score=40.65 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-+|||||||.+-|
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l 51 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTL 51 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 67889999999999999999988
No 488
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=62.29 E-value=5.7 Score=41.56 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=64.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhhcCCceE-EEecCCCCChhHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERRRKPYSV-MLADKNAPNEEVWRQIE 854 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~kkp~si-~lADKNaP~~~vWr~Ie 854 (1112)
.+..|.|-|.+||||||+.+.++..--.- + ..+-+ +.|..-=.. +++..+ +... ....+..+.|.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~-~-~~iv~-iEd~~E~~l---------~~~~~~~~~~~--~~~~~~~~~l~ 191 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPE-D-ERIVT-IEDPPELRL---------PGPNQIQIQTR--RDEISYEDLLK 191 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTT-T-SEEEE-EESSS-S-----------SCSSEEEEEEE--TTTBSHHHHHH
T ss_pred cceEEEEECCCccccchHHHHHhhhcccc-c-cceEE-eccccceee---------cccceEEEEee--cCcccHHHHHH
Confidence 36677789999999999988776532222 1 12222 223221100 111111 2222 33444455555
Q ss_pred HHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCC-CCCchhHHHHHHHhhcCCchhhhHHHHHH
Q 046016 855 DMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKN-SPNAGYVLLMFYHLYEGKSRKEFDGELVE 933 (1112)
Q Consensus 855 dmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDks-sp~Ag~VllMFy~LY~~k~r~ef~seL~~ 933 (1112)
..-+ .... +=+|.+--+ .++... ++. ....|.|.+=-- +.++.-++--+..++-..+...+.+.|.+
T Consensus 192 ~~LR-~~pD-~iiigEiR~-------~e~~~~--~~a-~~tGh~~~~tT~Ha~s~~~~i~Rl~~l~~~~~~~~l~~~l~~ 259 (270)
T PF00437_consen 192 SALR-QDPD-VIIIGEIRD-------PEAAEA--IQA-ANTGHLGSLTTLHANSAEDAIERLADLGMEMDPESLRSRLAS 259 (270)
T ss_dssp HHTT-S--S-EEEESCE-S-------CHHHHH--HHH-HHTT-EEEEEEEE-SSHHHHHHHHHHHCCTSCHHHHHHHHHH
T ss_pred HHhc-CCCC-cccccccCC-------HhHHHH--HHh-hccCCceeeeeeecCCHHHHHHHHHHHhcccCHHHHHHHHHh
Confidence 4333 2222 112222222 122222 222 234666533222 44555556666667766777777777777
Q ss_pred HhcCcEe
Q 046016 934 RFGSLIK 940 (1112)
Q Consensus 934 rF~~lVk 940 (1112)
-+.-+|.
T Consensus 260 ~idi~v~ 266 (270)
T PF00437_consen 260 AIDIIVH 266 (270)
T ss_dssp HEEEEEE
T ss_pred HHhEEEE
Confidence 6654444
No 489
>PRK11566 hdeB acid-resistance protein; Provisional
Probab=62.25 E-value=6.5 Score=38.55 Aligned_cols=53 Identities=21% Similarity=0.436 Sum_probs=44.2
Q ss_pred HHHHHHhhcceEEEeeehhhhccCCCCCCCCCceEEeeeeccCCCCCcccccHHHHHHHHhc
Q 046016 288 EFNDFLEKNRMCISMELVTAVLGDHGQRPREDYAVVTAVTELGNGKPKFYSTPEIIAFCRKW 349 (1112)
Q Consensus 288 efndfle~nRl~iSmElVTavLGdHGqrP~~dY~VvTAvteL~ngkP~FysT~e~i~fCrkw 349 (1112)
-|.+|++-|-=++.. ++.+++|+-+|-=..|| .+++|..+ -.+|-+|++|+|-
T Consensus 32 TCkEFldlnpks~tP-Va~Wv~n~d~~yKggD~---vd~~e~et-----~~tPkvie~Ckk~ 84 (102)
T PRK11566 32 TCQEFIDLNPKSMTP-VAFWVLNEDTDYKGGDY---VDLNETDT-----TQVPKVIEYCKKN 84 (102)
T ss_pred cHHHHHcCCccccce-eEEEEEcCCCcccCCcc---ccccceee-----eechHHHHHHHhC
Confidence 399999999777777 99999999999999999 35666653 4589999999983
No 490
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=62.22 E-value=5.6 Score=41.99 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~ 46 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLA 46 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 468888899999999999999884
No 491
>CHL00095 clpC Clp protease ATP binding subunit
Probab=62.15 E-value=15 Score=45.50 Aligned_cols=81 Identities=26% Similarity=0.429 Sum_probs=49.0
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC--------cc---ch-----HHHHHHhhcCCceEEEecCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK--------GK---YW-----QKVADERRRKPYSVMLADKN 843 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK--------Gr---YW-----qkVa~eR~kkp~si~lADKN 843 (1112)
++|-|-|||||+.|++.|-+..-|-+. ..+..-|++..- |. |. ..+.+.-+++|++|+|.|-=
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~~~-~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDei 620 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGSED-AMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEI 620 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCcc-ceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECCh
Confidence 457999999999999998775433221 122222332110 10 11 12455556799999998742
Q ss_pred C-CChhHHHHHHHHhccCC
Q 046016 844 A-PNEEVWRQIEDMCRRTR 861 (1112)
Q Consensus 844 a-P~~~vWr~IedmC~~t~ 861 (1112)
- -+.+++..+-.+...+.
T Consensus 621 eka~~~v~~~Llq~le~g~ 639 (821)
T CHL00095 621 EKAHPDIFNLLLQILDDGR 639 (821)
T ss_pred hhCCHHHHHHHHHHhccCc
Confidence 1 33478988888877654
No 492
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=62.13 E-value=6.4 Score=38.46 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=22.9
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
++....-|.+-|.+|+|||+|.+-|.+.
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 5566667788999999999999988653
No 493
>PTZ00369 Ras-like protein; Provisional
Probab=62.05 E-value=5.4 Score=39.31 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=17.3
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
=|.+-|-||||||+|++-+.+
T Consensus 7 Ki~iiG~~~~GKTsLi~~~~~ 27 (189)
T PTZ00369 7 KLVVVGGGGVGKSALTIQFIQ 27 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 356779999999999988754
No 494
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=62.04 E-value=5.7 Score=40.93 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++..-|-+|||||||.+-|.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~ 52 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSIN 52 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999983
No 495
>PHA03132 thymidine kinase; Provisional
Probab=62.01 E-value=11 Score=45.55 Aligned_cols=44 Identities=23% Similarity=0.489 Sum_probs=31.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVA 827 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa 827 (1112)
.|.+|+|=||-|+||||+++.|.+.. |. .|....= -+.||++|-
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~l---g~--~Vi~t~E---P~~~W~~vy 299 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGIL---GD--NVLVFPE---PMRYWTEVY 299 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHh---CC--ceEEEeC---CCCchhhcc
Confidence 59999999999999999999997766 22 2221110 267888664
No 496
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=62.00 E-value=5.6 Score=41.18 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.|-|.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHh
Confidence 578888999999999999999983
No 497
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=61.91 E-value=5.8 Score=40.32 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-+|||||||.+-|.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~ 57 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILA 57 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHH
Confidence 577788899999999999999984
No 498
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.90 E-value=5.6 Score=42.04 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||++-|.
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~ 71 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCIN 71 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 578889999999999999999883
No 499
>PRK07952 DNA replication protein DnaC; Validated
Probab=61.89 E-value=5.3 Score=42.99 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
-++|.|-||||||.|+..|.+..
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999988876654
No 500
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=61.87 E-value=5.5 Score=43.76 Aligned_cols=24 Identities=38% Similarity=0.329 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-.-|-+|||||||.|-|.
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~ 49 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLA 49 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
Confidence 457788888999999999999873
Done!