Query 046016
Match_columns 1112
No_of_seqs 24 out of 26
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 13:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046016.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046016hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0042 1.4E-07 62.3 10.9 105 776-895 3-121 (260)
2 3zvl_A Bifunctional polynucleo 96.5 0.01 3.4E-07 64.2 10.6 141 774-945 255-398 (416)
3 2p5t_B PEZT; postsegregational 96.2 0.013 4.3E-07 58.5 8.7 40 775-819 30-69 (253)
4 2c5u_A RNA ligase, T4 RNA liga 96.2 0.01 3.5E-07 64.9 8.7 138 199-360 68-213 (375)
5 2plr_A DTMP kinase, probable t 96.0 0.0021 7.2E-08 60.0 2.0 30 776-805 3-32 (213)
6 3cm0_A Adenylate kinase; ATP-b 95.6 0.0042 1.4E-07 57.5 2.3 26 776-801 3-28 (186)
7 2yvu_A Probable adenylyl-sulfa 95.6 0.0031 1.1E-07 59.0 1.3 43 774-818 10-52 (186)
8 1kht_A Adenylate kinase; phosp 95.5 0.0045 1.5E-07 56.9 2.1 29 777-805 3-31 (192)
9 2v54_A DTMP kinase, thymidylat 95.5 0.0059 2E-07 57.1 2.9 29 776-804 3-31 (204)
10 3lw7_A Adenylate kinase relate 95.5 0.0053 1.8E-07 54.7 2.3 23 778-801 2-24 (179)
11 1ukz_A Uridylate kinase; trans 95.3 0.0089 3E-07 56.4 3.3 29 774-802 12-40 (203)
12 1m7g_A Adenylylsulfate kinase; 95.2 0.0038 1.3E-07 60.1 0.5 44 774-819 22-66 (211)
13 1nks_A Adenylate kinase; therm 95.2 0.0042 1.4E-07 57.0 0.8 29 778-806 2-30 (194)
14 2rhm_A Putative kinase; P-loop 95.2 0.007 2.4E-07 56.0 2.1 26 776-801 4-29 (193)
15 1ly1_A Polynucleotide kinase; 95.2 0.01 3.5E-07 54.0 3.1 22 778-799 3-24 (181)
16 1tev_A UMP-CMP kinase; ploop, 95.1 0.008 2.7E-07 55.2 2.3 25 777-801 3-27 (196)
17 1zp6_A Hypothetical protein AT 94.9 0.013 4.5E-07 54.4 3.1 27 775-801 7-33 (191)
18 2vli_A Antibiotic resistance p 94.9 0.009 3.1E-07 55.0 1.9 27 776-802 4-30 (183)
19 2cdn_A Adenylate kinase; phosp 94.9 0.011 3.6E-07 56.1 2.4 29 773-801 16-44 (201)
20 2wwf_A Thymidilate kinase, put 94.8 0.011 3.6E-07 55.8 2.2 28 775-802 8-35 (212)
21 2c95_A Adenylate kinase 1; tra 94.8 0.0094 3.2E-07 55.3 1.8 26 776-801 8-33 (196)
22 1aky_A Adenylate kinase; ATP:A 94.7 0.011 3.9E-07 56.8 2.1 38 776-819 3-40 (220)
23 2jaq_A Deoxyguanosine kinase; 94.4 0.013 4.5E-07 54.4 1.9 25 778-802 1-25 (205)
24 1nn5_A Similar to deoxythymidy 94.4 0.015 5.2E-07 54.6 2.2 28 775-802 7-34 (215)
25 1zak_A Adenylate kinase; ATP:A 94.3 0.012 3.9E-07 56.8 1.2 29 774-802 2-30 (222)
26 1knq_A Gluconate kinase; ALFA/ 94.3 0.02 6.7E-07 52.8 2.7 29 773-801 4-32 (175)
27 1qhx_A CPT, protein (chloramph 94.3 0.019 6.4E-07 52.8 2.5 26 777-802 3-28 (178)
28 3be4_A Adenylate kinase; malar 94.3 0.012 4.1E-07 57.0 1.3 27 775-801 3-29 (217)
29 2j41_A Guanylate kinase; GMP, 94.3 0.019 6.6E-07 53.7 2.6 26 775-800 4-29 (207)
30 2pez_A Bifunctional 3'-phospho 94.2 0.017 5.8E-07 53.8 2.2 43 775-819 3-45 (179)
31 3kb2_A SPBC2 prophage-derived 94.2 0.017 5.8E-07 52.2 2.0 24 779-802 3-26 (173)
32 1qf9_A UMP/CMP kinase, protein 94.2 0.019 6.4E-07 52.7 2.3 28 775-802 4-31 (194)
33 2qor_A Guanylate kinase; phosp 94.1 0.019 6.5E-07 55.0 2.3 29 775-803 10-38 (204)
34 2bwj_A Adenylate kinase 5; pho 94.0 0.016 5.6E-07 53.8 1.6 27 776-802 11-37 (199)
35 4eun_A Thermoresistant glucoki 93.9 0.02 6.9E-07 54.6 2.1 31 771-801 23-53 (200)
36 2z0h_A DTMP kinase, thymidylat 93.9 0.024 8.1E-07 52.6 2.4 24 778-801 1-24 (197)
37 1zd8_A GTP:AMP phosphotransfer 93.9 0.021 7.2E-07 55.3 2.2 27 775-801 5-31 (227)
38 3vaa_A Shikimate kinase, SK; s 93.7 0.023 8E-07 54.1 2.0 27 775-801 23-49 (199)
39 4eaq_A DTMP kinase, thymidylat 93.7 0.028 9.4E-07 56.1 2.6 29 775-803 24-52 (229)
40 2bdt_A BH3686; alpha-beta prot 93.7 0.032 1.1E-06 52.2 2.9 23 777-799 2-24 (189)
41 1ak2_A Adenylate kinase isoenz 93.6 0.025 8.7E-07 55.3 2.2 38 775-818 14-51 (233)
42 2pbr_A DTMP kinase, thymidylat 93.6 0.029 9.7E-07 51.7 2.4 24 778-801 1-24 (195)
43 2pt5_A Shikimate kinase, SK; a 93.5 0.025 8.6E-07 51.5 1.9 25 778-802 1-25 (168)
44 3sr0_A Adenylate kinase; phosp 93.5 0.017 5.9E-07 57.4 0.8 36 778-819 1-36 (206)
45 1y63_A LMAJ004144AAA protein; 93.4 0.034 1.2E-06 52.5 2.6 26 775-800 8-33 (184)
46 1kag_A SKI, shikimate kinase I 93.4 0.027 9.4E-07 51.5 1.9 25 777-801 4-28 (173)
47 3uie_A Adenylyl-sulfate kinase 93.4 0.039 1.3E-06 52.6 3.0 43 774-818 22-64 (200)
48 3t61_A Gluconokinase; PSI-biol 93.1 0.028 9.6E-07 53.3 1.6 25 777-801 18-42 (202)
49 2bbw_A Adenylate kinase 4, AK4 93.1 0.034 1.2E-06 54.7 2.1 26 776-801 26-51 (246)
50 2xb4_A Adenylate kinase; ATP-b 93.0 0.032 1.1E-06 54.5 1.9 36 778-819 1-36 (223)
51 1p5z_B DCK, deoxycytidine kina 92.9 0.041 1.4E-06 54.8 2.4 30 774-803 21-50 (263)
52 1e6c_A Shikimate kinase; phosp 92.9 0.032 1.1E-06 50.9 1.5 23 779-801 4-26 (173)
53 1gvn_B Zeta; postsegregational 92.8 0.055 1.9E-06 55.8 3.2 39 775-818 31-69 (287)
54 1gtv_A TMK, thymidylate kinase 92.7 0.024 8.2E-07 53.4 0.5 24 779-802 2-25 (214)
55 3trf_A Shikimate kinase, SK; a 92.6 0.041 1.4E-06 51.0 1.9 25 777-801 5-29 (185)
56 2iyv_A Shikimate kinase, SK; t 92.6 0.032 1.1E-06 51.9 1.1 25 778-802 3-27 (184)
57 3iij_A Coilin-interacting nucl 92.5 0.037 1.3E-06 51.4 1.5 26 776-801 10-35 (180)
58 3tr0_A Guanylate kinase, GMP k 92.4 0.062 2.1E-06 50.3 2.8 26 775-800 5-30 (205)
59 1vht_A Dephospho-COA kinase; s 92.3 0.076 2.6E-06 50.9 3.4 24 776-799 3-26 (218)
60 3fb4_A Adenylate kinase; psych 92.3 0.048 1.6E-06 51.9 1.9 24 778-801 1-24 (216)
61 3tlx_A Adenylate kinase 2; str 92.2 0.061 2.1E-06 53.6 2.7 39 774-818 26-64 (243)
62 1e4v_A Adenylate kinase; trans 92.1 0.045 1.5E-06 52.6 1.5 23 779-801 2-24 (214)
63 3dl0_A Adenylate kinase; phosp 92.0 0.062 2.1E-06 51.3 2.4 35 779-819 2-36 (216)
64 2qt1_A Nicotinamide riboside k 92.0 0.072 2.5E-06 50.7 2.7 28 774-801 18-45 (207)
65 2vp4_A Deoxynucleoside kinase; 91.9 0.084 2.9E-06 51.8 3.1 28 773-800 16-43 (230)
66 2gks_A Bifunctional SAT/APS ki 91.7 0.037 1.3E-06 62.6 0.5 42 776-819 371-412 (546)
67 3tau_A Guanylate kinase, GMP k 91.7 0.1 3.5E-06 50.4 3.5 27 775-801 6-32 (208)
68 4edh_A DTMP kinase, thymidylat 91.6 0.063 2.2E-06 53.5 2.0 30 776-805 5-34 (213)
69 2ocp_A DGK, deoxyguanosine kin 91.4 0.091 3.1E-06 51.5 2.9 27 777-803 2-28 (241)
70 3c8u_A Fructokinase; YP_612366 91.4 0.1 3.5E-06 50.2 3.1 26 774-799 19-44 (208)
71 1zuh_A Shikimate kinase; alpha 91.3 0.076 2.6E-06 48.8 2.0 23 779-801 9-31 (168)
72 1lv7_A FTSH; alpha/beta domain 91.3 0.24 8.2E-06 48.6 5.6 57 780-841 48-111 (257)
73 3h4m_A Proteasome-activating n 91.2 0.23 7.8E-06 49.1 5.5 57 780-841 54-117 (285)
74 1ltq_A Polynucleotide kinase; 91.2 0.096 3.3E-06 52.4 2.8 23 778-800 3-25 (301)
75 3umf_A Adenylate kinase; rossm 91.2 0.054 1.8E-06 54.8 1.0 37 777-819 29-65 (217)
76 1uf9_A TT1252 protein; P-loop, 91.0 0.12 4.1E-06 48.2 3.1 26 775-800 6-31 (203)
77 3b9p_A CG5977-PA, isoform A; A 90.8 0.3 1E-05 48.7 5.9 22 780-801 57-78 (297)
78 2if2_A Dephospho-COA kinase; a 90.7 0.1 3.5E-06 49.3 2.3 21 779-799 3-23 (204)
79 1xwi_A SKD1 protein; VPS4B, AA 90.7 0.28 9.7E-06 51.0 5.8 60 776-841 46-112 (322)
80 3v9p_A DTMP kinase, thymidylat 90.6 0.097 3.3E-06 53.2 2.2 28 775-802 23-50 (227)
81 1cke_A CK, MSSA, protein (cyti 90.5 0.11 3.9E-06 49.4 2.5 25 777-801 5-29 (227)
82 1kgd_A CASK, peripheral plasma 90.4 0.12 4.3E-06 48.7 2.6 25 776-800 4-28 (180)
83 1jjv_A Dephospho-COA kinase; P 90.4 0.14 4.8E-06 48.5 3.0 22 778-799 3-24 (206)
84 2chg_A Replication factor C sm 90.2 0.21 7.1E-06 45.6 3.8 22 780-801 41-62 (226)
85 2qz4_A Paraplegin; AAA+, SPG7, 90.2 0.31 1E-05 47.2 5.2 22 780-801 42-63 (262)
86 1via_A Shikimate kinase; struc 90.0 0.092 3.2E-06 48.7 1.4 23 779-801 6-28 (175)
87 1g8f_A Sulfate adenylyltransfe 90.0 0.17 5.9E-06 57.3 3.8 43 775-817 393-435 (511)
88 4gp7_A Metallophosphoesterase; 89.9 0.14 4.8E-06 48.2 2.5 23 775-797 7-29 (171)
89 4b4t_M 26S protease regulatory 89.9 0.18 6.1E-06 56.1 3.7 59 775-841 215-281 (434)
90 1rz3_A Hypothetical protein rb 89.8 0.16 5.5E-06 48.7 2.9 27 774-800 19-45 (201)
91 3gmt_A Adenylate kinase; ssgci 89.8 0.19 6.4E-06 51.8 3.5 62 780-855 11-78 (230)
92 1q3t_A Cytidylate kinase; nucl 89.7 0.13 4.4E-06 50.4 2.2 28 773-800 12-39 (236)
93 4b4t_L 26S protease subunit RP 89.4 0.38 1.3E-05 53.6 5.8 42 775-823 215-256 (437)
94 3ec2_A DNA replication protein 89.3 0.17 5.8E-06 47.1 2.5 25 776-800 37-61 (180)
95 1uj2_A Uridine-cytidine kinase 89.1 0.19 6.6E-06 49.8 2.9 51 777-827 22-76 (252)
96 3ld9_A DTMP kinase, thymidylat 89.0 0.2 7E-06 50.9 3.1 30 774-803 18-47 (223)
97 3lv8_A DTMP kinase, thymidylat 88.8 0.16 5.5E-06 51.8 2.2 28 775-802 25-52 (236)
98 3tmk_A Thymidylate kinase; pho 88.7 0.17 5.8E-06 51.0 2.3 27 776-802 4-30 (216)
99 1ixz_A ATP-dependent metallopr 88.7 0.33 1.1E-05 47.6 4.2 25 775-801 49-73 (254)
100 3asz_A Uridine kinase; cytidin 88.6 0.2 6.8E-06 47.5 2.6 26 775-800 4-29 (211)
101 4e22_A Cytidylate kinase; P-lo 88.6 0.21 7.1E-06 50.1 2.8 28 775-802 25-52 (252)
102 3lnc_A Guanylate kinase, GMP k 88.4 0.16 5.5E-06 49.3 1.8 24 775-798 25-48 (231)
103 4tmk_A Protein (thymidylate ki 88.3 0.19 6.4E-06 50.4 2.2 27 776-802 2-28 (213)
104 4b4t_K 26S protease regulatory 88.2 0.52 1.8E-05 52.3 5.9 42 775-823 206-247 (428)
105 1x6v_B Bifunctional 3'-phospho 88.2 0.14 4.8E-06 59.5 1.5 41 776-818 51-91 (630)
106 2x8a_A Nuclear valosin-contain 88.1 0.6 2E-05 47.7 5.8 41 775-822 44-84 (274)
107 2zan_A Vacuolar protein sortin 88.0 0.5 1.7E-05 51.5 5.5 24 776-801 168-191 (444)
108 3t1o_A Gliding protein MGLA; G 88.0 1 3.5E-05 40.8 6.7 23 777-799 14-36 (198)
109 3syl_A Protein CBBX; photosynt 87.9 0.2 6.9E-06 49.9 2.2 48 776-823 66-115 (309)
110 1m8p_A Sulfate adenylyltransfe 87.8 0.1 3.5E-06 59.4 -0.0 43 775-818 394-436 (573)
111 2qp9_X Vacuolar protein sortin 87.7 0.35 1.2E-05 51.0 4.0 24 776-801 85-108 (355)
112 4a74_A DNA repair and recombin 87.7 0.25 8.5E-06 46.7 2.6 24 776-799 24-47 (231)
113 3t15_A Ribulose bisphosphate c 87.7 0.23 7.9E-06 50.9 2.5 23 777-801 38-60 (293)
114 3nwj_A ATSK2; P loop, shikimat 87.5 0.17 5.7E-06 51.9 1.4 25 777-801 48-72 (250)
115 2axn_A 6-phosphofructo-2-kinas 87.3 0.26 9E-06 55.3 2.9 28 775-802 33-60 (520)
116 2f6r_A COA synthase, bifunctio 87.3 0.26 9E-06 50.4 2.6 24 776-799 74-97 (281)
117 1z06_A RAS-related protein RAB 87.0 0.32 1.1E-05 44.7 2.9 25 775-799 18-42 (189)
118 1d2n_A N-ethylmaleimide-sensit 86.8 0.89 3.1E-05 45.1 6.0 62 776-841 63-131 (272)
119 2ehv_A Hypothetical protein PH 86.6 0.31 1.1E-05 46.6 2.6 24 775-798 28-51 (251)
120 1s68_A RNA ligase 2; ribonucle 86.5 10 0.00034 39.2 13.8 131 205-356 5-152 (249)
121 1ye8_A Protein THEP1, hypothet 86.5 0.3 1E-05 47.2 2.5 23 779-801 2-24 (178)
122 2w0m_A SSO2452; RECA, SSPF, un 86.4 0.32 1.1E-05 45.6 2.5 23 776-798 22-44 (235)
123 2h92_A Cytidylate kinase; ross 86.3 0.27 9.1E-06 46.9 2.0 26 777-802 3-28 (219)
124 4b4t_I 26S protease regulatory 86.3 0.45 1.5E-05 53.5 4.0 43 775-824 216-258 (437)
125 1r8s_A ADP-ribosylation factor 86.2 2.3 7.7E-05 37.6 7.7 20 780-799 3-22 (164)
126 1znw_A Guanylate kinase, GMP k 86.2 0.33 1.1E-05 46.6 2.5 26 775-800 18-43 (207)
127 2ze6_A Isopentenyl transferase 85.8 0.3 1E-05 49.1 2.1 24 779-802 3-26 (253)
128 1odf_A YGR205W, hypothetical 3 85.7 0.43 1.5E-05 49.7 3.3 27 774-800 28-54 (290)
129 3ney_A 55 kDa erythrocyte memb 85.7 0.39 1.4E-05 48.1 2.9 30 772-801 14-43 (197)
130 2cvh_A DNA repair and recombin 85.6 0.36 1.2E-05 45.4 2.4 25 775-799 18-42 (220)
131 1jbk_A CLPB protein; beta barr 85.6 0.41 1.4E-05 42.7 2.7 21 780-800 46-66 (195)
132 3eie_A Vacuolar protein sortin 85.5 0.43 1.5E-05 49.1 3.2 22 780-801 54-75 (322)
133 3e70_C DPA, signal recognition 85.5 0.76 2.6E-05 48.9 5.1 25 774-798 126-150 (328)
134 4hlc_A DTMP kinase, thymidylat 85.4 0.41 1.4E-05 47.4 2.8 23 778-800 3-25 (205)
135 4b4t_J 26S protease regulatory 85.3 0.47 1.6E-05 52.7 3.6 42 775-823 182-223 (405)
136 1iy2_A ATP-dependent metallopr 85.3 0.62 2.1E-05 46.6 4.1 25 775-801 73-97 (278)
137 3aez_A Pantothenate kinase; tr 85.1 0.47 1.6E-05 49.9 3.3 25 775-799 88-112 (312)
138 1sq5_A Pantothenate kinase; P- 85.0 0.43 1.5E-05 49.4 2.9 26 775-800 78-103 (308)
139 1lvg_A Guanylate kinase, GMP k 85.0 0.33 1.1E-05 46.9 1.9 24 776-799 3-26 (198)
140 1bif_A 6-phosphofructo-2-kinas 84.9 0.43 1.5E-05 52.1 3.0 28 775-802 37-64 (469)
141 3r20_A Cytidylate kinase; stru 84.5 0.35 1.2E-05 49.5 1.9 25 777-801 9-33 (233)
142 3d8b_A Fidgetin-like protein 1 84.5 1 3.5E-05 47.3 5.4 57 780-841 120-183 (357)
143 2www_A Methylmalonic aciduria 84.2 0.55 1.9E-05 49.8 3.3 25 775-799 72-96 (349)
144 3tqc_A Pantothenate kinase; bi 84.2 0.66 2.3E-05 49.6 4.0 24 777-800 92-115 (321)
145 1z6g_A Guanylate kinase; struc 84.2 0.38 1.3E-05 47.2 2.0 26 775-800 21-46 (218)
146 3cf0_A Transitional endoplasmi 84.2 0.61 2.1E-05 47.6 3.6 23 780-802 52-74 (301)
147 3ake_A Cytidylate kinase; CMP 84.2 0.39 1.3E-05 44.9 2.0 24 779-802 4-27 (208)
148 2jeo_A Uridine-cytidine kinase 84.0 0.46 1.6E-05 46.9 2.5 27 775-801 23-49 (245)
149 1j8m_F SRP54, signal recogniti 83.7 1.5 5E-05 45.9 6.3 22 777-798 98-119 (297)
150 1oix_A RAS-related protein RAB 83.7 0.49 1.7E-05 44.4 2.4 26 775-800 27-52 (191)
151 1n0w_A DNA repair protein RAD5 83.6 0.5 1.7E-05 45.1 2.5 24 776-799 23-46 (243)
152 1pui_A ENGB, probable GTP-bind 83.5 0.42 1.4E-05 44.6 1.8 27 772-798 21-47 (210)
153 2kjq_A DNAA-related protein; s 83.5 0.46 1.6E-05 44.5 2.1 24 776-799 35-58 (149)
154 2grj_A Dephospho-COA kinase; T 83.5 0.46 1.6E-05 46.7 2.2 26 776-801 11-36 (192)
155 3pqc_A Probable GTP-binding pr 83.4 1.5 5.2E-05 39.7 5.5 24 778-801 24-47 (195)
156 3a00_A Guanylate kinase, GMP k 83.4 0.44 1.5E-05 45.1 2.0 22 779-800 3-24 (186)
157 2p65_A Hypothetical protein PF 83.4 0.44 1.5E-05 42.8 1.9 21 780-800 46-66 (187)
158 3tqf_A HPR(Ser) kinase; transf 83.3 0.48 1.7E-05 48.1 2.4 48 775-822 14-62 (181)
159 1zu4_A FTSY; GTPase, signal re 83.2 2.5 8.5E-05 44.8 7.8 24 775-798 103-126 (320)
160 3cf2_A TER ATPase, transitiona 83.1 0.8 2.8E-05 54.7 4.5 60 775-841 238-304 (806)
161 1njg_A DNA polymerase III subu 83.0 0.57 1.9E-05 43.0 2.5 23 779-801 47-69 (250)
162 1cr0_A DNA primase/helicase; R 83.0 0.47 1.6E-05 47.7 2.2 25 775-799 33-57 (296)
163 4bas_A ADP-ribosylation factor 82.6 0.57 1.9E-05 42.9 2.3 27 773-799 13-39 (199)
164 3hjn_A DTMP kinase, thymidylat 82.6 0.55 1.9E-05 46.0 2.4 24 778-801 1-24 (197)
165 4fcw_A Chaperone protein CLPB; 82.6 1.1 3.7E-05 44.6 4.5 24 778-801 48-71 (311)
166 3vfd_A Spastin; ATPase, microt 82.5 1.3 4.5E-05 46.7 5.3 39 779-822 150-188 (389)
167 2r62_A Cell division protease 82.4 0.52 1.8E-05 46.3 2.1 22 780-801 47-68 (268)
168 2qm8_A GTPase/ATPase; G protei 82.3 0.67 2.3E-05 49.0 3.1 26 774-799 52-77 (337)
169 1s96_A Guanylate kinase, GMP k 82.3 0.6 2.1E-05 46.6 2.6 26 775-800 14-39 (219)
170 2r2a_A Uncharacterized protein 82.2 1.2 4E-05 44.3 4.6 22 777-798 5-26 (199)
171 1ls1_A Signal recognition part 82.1 2.6 8.9E-05 43.8 7.3 23 776-798 97-119 (295)
172 2gj8_A MNME, tRNA modification 82.0 0.63 2.2E-05 42.9 2.5 26 775-800 2-27 (172)
173 1svm_A Large T antigen; AAA+ f 82.0 0.54 1.8E-05 51.2 2.3 28 775-802 167-194 (377)
174 2c9o_A RUVB-like 1; hexameric 81.8 1 3.4E-05 49.0 4.3 40 780-822 66-105 (456)
175 3lxw_A GTPase IMAP family memb 81.8 4.1 0.00014 40.6 8.3 30 773-802 17-46 (247)
176 4b4t_H 26S protease regulatory 81.7 0.81 2.8E-05 51.8 3.6 42 775-823 243-284 (467)
177 1htw_A HI0065; nucleotide-bind 81.7 0.95 3.3E-05 43.3 3.6 27 775-801 31-57 (158)
178 2a5j_A RAS-related protein RAB 81.5 0.87 3E-05 42.1 3.2 28 773-800 17-44 (191)
179 3c5c_A RAS-like protein 12; GD 81.4 0.79 2.7E-05 42.6 2.9 28 773-800 17-44 (187)
180 3con_A GTPase NRAS; structural 81.0 0.78 2.7E-05 42.0 2.6 25 776-800 20-44 (190)
181 2i3b_A HCR-ntpase, human cance 80.9 0.59 2E-05 45.8 1.9 23 777-799 1-23 (189)
182 1kao_A RAP2A; GTP-binding prot 80.9 0.74 2.5E-05 40.3 2.3 22 778-799 4-25 (167)
183 3pxg_A Negative regulator of g 80.7 1.8 6E-05 47.6 5.7 60 781-841 205-274 (468)
184 3tif_A Uncharacterized ABC tra 80.7 2.1 7.2E-05 43.0 5.9 23 775-797 29-51 (235)
185 3bos_A Putative DNA replicatio 80.6 0.76 2.6E-05 43.1 2.5 27 776-802 51-77 (242)
186 1z2a_A RAS-related protein RAB 80.5 0.76 2.6E-05 40.5 2.3 21 779-799 7-27 (168)
187 3ihw_A Centg3; RAS, centaurin, 80.0 1.1 3.6E-05 41.9 3.2 27 773-799 16-42 (184)
188 2h57_A ADP-ribosylation factor 80.0 0.64 2.2E-05 42.8 1.7 25 775-799 19-43 (190)
189 1sxj_D Activator 1 41 kDa subu 79.9 0.59 2E-05 47.1 1.6 22 780-801 61-82 (353)
190 2b8t_A Thymidine kinase; deoxy 79.7 1.7 5.9E-05 44.1 4.9 32 774-805 9-40 (223)
191 3bh0_A DNAB-like replicative h 79.7 2.1 7.3E-05 44.4 5.7 35 765-799 54-90 (315)
192 2qby_A CDC6 homolog 1, cell di 79.6 0.74 2.5E-05 46.3 2.2 25 776-800 44-68 (386)
193 2erx_A GTP-binding protein DI- 79.1 0.91 3.1E-05 40.0 2.4 22 778-799 4-25 (172)
194 1rj9_A FTSY, signal recognitio 79.1 0.88 3E-05 47.8 2.6 25 774-798 99-123 (304)
195 2ce2_X GTPase HRAS; signaling 79.0 0.79 2.7E-05 39.9 1.9 21 780-800 6-26 (166)
196 2h17_A ADP-ribosylation factor 78.8 0.81 2.8E-05 41.9 2.0 27 774-800 18-44 (181)
197 2zts_A Putative uncharacterize 78.5 1 3.4E-05 43.0 2.6 23 776-798 29-51 (251)
198 1u8z_A RAS-related protein RAL 78.3 0.97 3.3E-05 39.5 2.3 21 780-800 7-27 (168)
199 3q85_A GTP-binding protein REM 78.1 1 3.4E-05 40.1 2.3 21 780-800 5-25 (169)
200 1yrb_A ATP(GTP)binding protein 78.0 1.3 4.3E-05 43.2 3.2 40 775-817 12-51 (262)
201 1wms_A RAB-9, RAB9, RAS-relate 77.8 1 3.5E-05 40.3 2.3 23 778-800 8-30 (177)
202 2v1u_A Cell division control p 77.7 1.1 3.8E-05 45.2 2.8 25 777-801 44-68 (387)
203 3tw8_B RAS-related protein RAB 77.7 0.84 2.9E-05 40.7 1.7 22 778-799 10-31 (181)
204 3cr8_A Sulfate adenylyltranfer 77.7 0.87 3E-05 51.9 2.2 43 775-818 367-409 (552)
205 3m6a_A ATP-dependent protease 77.7 1.1 3.9E-05 50.2 3.1 26 776-801 107-132 (543)
206 3clv_A RAB5 protein, putative; 77.5 1.5 5.2E-05 39.4 3.3 26 775-800 5-30 (208)
207 2v9p_A Replication protein E1; 77.4 1 3.5E-05 47.8 2.6 27 775-801 124-150 (305)
208 2oil_A CATX-8, RAS-related pro 77.3 1.2 4.3E-05 40.9 2.8 25 777-801 25-49 (193)
209 1c1y_A RAS-related protein RAP 77.1 1.1 3.8E-05 39.4 2.3 20 780-799 6-25 (167)
210 1ek0_A Protein (GTP-binding pr 77.1 1.1 3.8E-05 39.4 2.3 21 780-800 6-26 (170)
211 2rcn_A Probable GTPase ENGC; Y 76.9 1 3.6E-05 48.9 2.5 22 777-798 215-236 (358)
212 2hxs_A RAB-26, RAS-related pro 76.7 1.2 4.1E-05 39.9 2.4 22 778-799 7-28 (178)
213 2hvq_A ORF1, hypothetical 37.6 76.6 25 0.00087 37.9 13.0 131 205-356 6-153 (335)
214 1g16_A RAS-related protein SEC 76.5 1 3.5E-05 39.8 1.9 21 780-800 6-26 (170)
215 1ky3_A GTP-binding protein YPT 76.5 1.2 4.1E-05 39.8 2.3 24 777-800 8-31 (182)
216 2pcj_A ABC transporter, lipopr 76.5 1 3.4E-05 44.9 2.0 23 775-797 28-50 (224)
217 2f7s_A C25KG, RAS-related prot 76.5 1.3 4.5E-05 41.6 2.7 25 775-799 23-47 (217)
218 2dyk_A GTP-binding protein; GT 76.3 1.2 4.2E-05 39.1 2.3 22 780-801 4-25 (161)
219 2dr3_A UPF0273 protein PH0284; 76.2 1.1 3.8E-05 42.6 2.2 24 776-799 22-45 (247)
220 3q72_A GTP-binding protein RAD 76.2 0.85 2.9E-05 40.4 1.3 19 780-798 5-23 (166)
221 1z0j_A RAB-22, RAS-related pro 76.2 1.2 4.2E-05 39.2 2.3 23 778-800 7-29 (170)
222 1z08_A RAS-related protein RAB 76.1 1.2 4.2E-05 39.4 2.3 23 778-800 7-29 (170)
223 1r2q_A RAS-related protein RAB 76.1 1.2 4.2E-05 39.1 2.3 21 779-799 8-28 (170)
224 3oes_A GTPase rhebl1; small GT 76.0 1.3 4.3E-05 41.5 2.5 28 773-800 20-47 (201)
225 2wjg_A FEOB, ferrous iron tran 75.8 1.5 5E-05 40.0 2.8 22 778-799 8-29 (188)
226 2qen_A Walker-type ATPase; unk 75.8 1.3 4.4E-05 44.1 2.6 24 778-801 32-55 (350)
227 2nzj_A GTP-binding protein REM 75.8 1.2 4.2E-05 39.6 2.3 21 779-799 6-26 (175)
228 4dsu_A GTPase KRAS, isoform 2B 75.7 1.3 4.4E-05 40.0 2.3 23 778-800 5-27 (189)
229 2ga8_A Hypothetical 39.9 kDa p 75.6 1.6 5.3E-05 48.1 3.4 26 774-799 21-46 (359)
230 2ged_A SR-beta, signal recogni 75.5 1.3 4.4E-05 40.6 2.3 24 777-800 48-71 (193)
231 3b9q_A Chloroplast SRP recepto 75.5 1.4 4.8E-05 46.2 2.9 25 775-799 98-122 (302)
232 2yv5_A YJEQ protein; hydrolase 75.3 1.3 4.4E-05 46.0 2.5 23 776-798 164-186 (302)
233 4ag6_A VIRB4 ATPase, type IV s 75.2 1.6 5.3E-05 46.1 3.2 20 780-799 38-57 (392)
234 1wf3_A GTP-binding protein; GT 75.1 2.4 8.2E-05 44.1 4.5 24 779-802 9-32 (301)
235 3kkq_A RAS-related protein M-R 75.0 1.3 4.6E-05 40.1 2.3 25 775-799 16-40 (183)
236 2g6b_A RAS-related protein RAB 75.0 1.3 4.6E-05 39.7 2.3 23 778-800 11-33 (180)
237 1np6_A Molybdopterin-guanine d 74.9 1.4 4.8E-05 42.9 2.6 22 779-800 8-29 (174)
238 1z0f_A RAB14, member RAS oncog 74.9 1.4 4.7E-05 39.3 2.3 24 777-800 15-38 (179)
239 2w58_A DNAI, primosome compone 74.8 1.3 4.5E-05 41.6 2.3 23 779-801 56-78 (202)
240 1l8q_A Chromosomal replication 74.7 1.3 4.4E-05 45.1 2.3 23 778-800 38-60 (324)
241 3bc1_A RAS-related protein RAB 74.7 1.4 4.7E-05 39.7 2.3 22 778-799 12-33 (195)
242 1fnn_A CDC6P, cell division co 74.7 1.4 4.9E-05 44.7 2.6 24 779-802 46-69 (389)
243 2orw_A Thymidine kinase; TMTK, 74.7 1.3 4.4E-05 42.9 2.2 23 776-798 2-24 (184)
244 2y8e_A RAB-protein 6, GH09086P 74.5 1.2 4.2E-05 39.6 1.9 22 778-799 15-36 (179)
245 1puj_A YLQF, conserved hypothe 74.5 1.5 5.2E-05 45.3 2.8 26 775-800 118-143 (282)
246 2wji_A Ferrous iron transport 74.5 1.6 5.5E-05 39.6 2.7 22 778-799 4-25 (165)
247 1ko7_A HPR kinase/phosphatase; 74.4 1.2 4.2E-05 47.9 2.2 51 776-826 143-195 (314)
248 2zej_A Dardarin, leucine-rich 74.4 1.2 4.3E-05 41.1 2.0 20 780-799 5-24 (184)
249 1zd9_A ADP-ribosylation factor 74.3 1.6 5.6E-05 40.3 2.7 24 776-799 21-44 (188)
250 2zu0_C Probable ATP-dependent 74.3 1.5 5.2E-05 44.9 2.7 25 775-799 44-68 (267)
251 3p32_A Probable GTPase RV1496/ 74.2 1.5 5.3E-05 46.1 2.9 26 776-801 78-103 (355)
252 1nlf_A Regulatory protein REPA 74.2 1.2 4.2E-05 44.6 2.0 24 776-799 29-52 (279)
253 3ch4_B Pmkase, phosphomevalona 74.1 0.94 3.2E-05 46.1 1.2 41 776-819 10-50 (202)
254 1g6h_A High-affinity branched- 74.0 1.4 4.8E-05 44.7 2.4 23 775-797 31-53 (257)
255 2fn4_A P23, RAS-related protei 73.9 1.8 6.2E-05 38.6 2.8 24 777-800 9-32 (181)
256 2lkc_A Translation initiation 73.9 1.9 6.5E-05 38.6 3.0 24 776-799 7-30 (178)
257 2f9l_A RAB11B, member RAS onco 73.9 1.7 5.8E-05 40.6 2.8 23 778-800 6-28 (199)
258 1ypw_A Transitional endoplasmi 73.8 1 3.5E-05 53.1 1.5 25 777-801 511-535 (806)
259 2ce7_A Cell division protein F 73.7 2.9 0.0001 46.9 5.0 22 780-801 52-73 (476)
260 3pxi_A Negative regulator of g 73.6 3.5 0.00012 47.5 5.8 61 780-841 204-274 (758)
261 1mv5_A LMRA, multidrug resista 73.6 1.7 5.9E-05 43.6 2.9 24 775-798 26-49 (243)
262 1ji0_A ABC transporter; ATP bi 73.6 1.5 5E-05 44.2 2.4 23 775-797 30-52 (240)
263 2cbz_A Multidrug resistance-as 73.6 1.5 5.2E-05 44.0 2.5 23 775-797 29-51 (237)
264 2dhr_A FTSH; AAA+ protein, hex 73.6 2.3 7.9E-05 48.0 4.2 36 780-820 67-102 (499)
265 1upt_A ARL1, ADP-ribosylation 73.6 1.5 5.3E-05 38.8 2.3 23 777-799 7-29 (171)
266 3tui_C Methionine import ATP-b 73.5 4.7 0.00016 44.1 6.5 72 775-854 52-127 (366)
267 2a9k_A RAS-related protein RAL 73.5 1.5 5.3E-05 39.2 2.3 23 778-800 19-41 (187)
268 1in4_A RUVB, holliday junction 73.5 1.4 4.8E-05 45.8 2.3 23 779-801 53-75 (334)
269 2ff7_A Alpha-hemolysin translo 73.5 1.5 5E-05 44.5 2.4 23 775-797 33-55 (247)
270 2eyu_A Twitching motility prot 73.3 1.9 6.4E-05 44.2 3.1 26 774-799 22-47 (261)
271 3kta_A Chromosome segregation 73.3 1.8 6.1E-05 40.1 2.7 28 775-803 25-52 (182)
272 2o52_A RAS-related protein RAB 73.2 1.5 5.2E-05 41.1 2.3 26 774-799 22-47 (200)
273 1w5s_A Origin recognition comp 73.2 1.9 6.5E-05 44.2 3.2 19 782-800 57-75 (412)
274 1vma_A Cell division protein F 73.1 1.8 6.3E-05 45.6 3.1 25 775-799 102-126 (306)
275 1ypw_A Transitional endoplasmi 73.0 2.5 8.6E-05 49.8 4.5 25 777-801 238-262 (806)
276 3te6_A Regulatory protein SIR3 73.0 1.4 4.7E-05 47.2 2.1 30 772-801 40-69 (318)
277 3t5g_A GTP-binding protein RHE 73.0 1.4 4.8E-05 39.8 1.9 22 778-799 7-28 (181)
278 2gf9_A RAS-related protein RAB 72.9 2.1 7E-05 39.4 3.0 24 777-800 22-45 (189)
279 3dz8_A RAS-related protein RAB 72.9 1.3 4.5E-05 40.9 1.7 25 775-799 21-45 (191)
280 1b0u_A Histidine permease; ABC 72.8 1.6 5.6E-05 44.5 2.6 23 775-797 30-52 (262)
281 1mh1_A RAC1; GTP-binding, GTPa 72.8 1.6 5.6E-05 39.2 2.3 22 778-799 6-27 (186)
282 2il1_A RAB12; G-protein, GDP, 72.8 1.5 5.2E-05 40.7 2.1 25 775-799 24-48 (192)
283 1vpl_A ABC transporter, ATP-bi 72.7 1.7 5.7E-05 44.6 2.6 23 775-797 39-61 (256)
284 2d2e_A SUFC protein; ABC-ATPas 72.7 1.6 5.6E-05 44.0 2.5 25 775-799 27-51 (250)
285 1iqp_A RFCS; clamp loader, ext 72.7 1.3 4.3E-05 43.9 1.7 23 780-802 49-71 (327)
286 1u0l_A Probable GTPase ENGC; p 72.7 1.5 5.1E-05 45.3 2.3 22 777-798 169-190 (301)
287 2qby_B CDC6 homolog 3, cell di 72.7 1.6 5.5E-05 44.5 2.5 22 779-800 47-68 (384)
288 2fna_A Conserved hypothetical 72.6 1.5 5.1E-05 43.6 2.2 23 779-801 32-54 (357)
289 2pze_A Cystic fibrosis transme 72.5 1.6 5.6E-05 43.5 2.4 23 775-797 32-54 (229)
290 3uk6_A RUVB-like 2; hexameric 72.5 1.6 5.6E-05 44.5 2.5 26 777-802 70-95 (368)
291 1gwn_A RHO-related GTP-binding 72.3 1.7 5.9E-05 41.5 2.5 26 775-800 26-51 (205)
292 1qvr_A CLPB protein; coiled co 72.3 2.9 9.8E-05 49.1 4.8 21 780-800 194-214 (854)
293 1pzn_A RAD51, DNA repair and r 72.2 1.7 5.7E-05 46.2 2.6 24 776-799 130-153 (349)
294 3tkl_A RAS-related protein RAB 72.2 1.7 5.8E-05 39.7 2.3 22 778-799 17-38 (196)
295 2olj_A Amino acid ABC transpor 72.1 1.7 5.9E-05 44.7 2.6 23 775-797 48-70 (263)
296 2ghi_A Transport protein; mult 72.1 1.7 5.9E-05 44.3 2.5 24 775-798 44-67 (260)
297 3b85_A Phosphate starvation-in 72.1 1.3 4.5E-05 44.0 1.7 24 775-798 20-43 (208)
298 2ixe_A Antigen peptide transpo 72.1 1.7 5.9E-05 44.7 2.5 23 775-797 43-65 (271)
299 3gfo_A Cobalt import ATP-bindi 71.9 1.6 5.5E-05 45.3 2.3 23 775-797 32-54 (275)
300 1ni3_A YCHF GTPase, YCHF GTP-b 71.8 2.4 8.1E-05 46.6 3.7 28 775-802 18-45 (392)
301 1svi_A GTP-binding protein YSX 71.8 1.8 6E-05 39.7 2.3 27 774-800 20-46 (195)
302 4dcu_A GTP-binding protein ENG 71.7 6.7 0.00023 42.6 7.1 21 779-799 25-45 (456)
303 2ew1_A RAS-related protein RAB 71.6 1.8 6.1E-05 41.4 2.4 26 775-800 24-49 (201)
304 2p67_A LAO/AO transport system 71.6 1.8 6.2E-05 45.4 2.7 25 775-799 54-78 (341)
305 2iwr_A Centaurin gamma 1; ANK 71.5 1.6 5.4E-05 39.4 1.9 22 778-799 8-29 (178)
306 2f1r_A Molybdopterin-guanine d 71.4 1.2 4.1E-05 43.2 1.2 22 779-800 4-25 (171)
307 4g1u_C Hemin import ATP-bindin 71.4 1.8 6E-05 44.6 2.4 23 775-797 35-57 (266)
308 1ofh_A ATP-dependent HSL prote 71.2 1.8 6.1E-05 42.7 2.3 34 922-961 180-213 (310)
309 2p5s_A RAS and EF-hand domain 71.1 2.2 7.6E-05 39.7 2.8 28 773-800 24-51 (199)
310 2efe_B Small GTP-binding prote 71.0 1.9 6.6E-05 38.7 2.3 23 778-800 13-35 (181)
311 2wsm_A Hydrogenase expression/ 71.0 1.9 6.5E-05 40.7 2.4 24 778-801 31-54 (221)
312 2bme_A RAB4A, RAS-related prot 71.0 1.7 5.7E-05 39.4 1.9 24 778-801 11-34 (186)
313 1a7j_A Phosphoribulokinase; tr 71.0 1 3.5E-05 46.7 0.6 41 776-818 4-44 (290)
314 1ex7_A Guanylate kinase; subst 70.9 1.6 5.4E-05 43.2 1.9 27 780-806 4-31 (186)
315 3co5_A Putative two-component 70.7 4.4 0.00015 37.0 4.7 21 780-800 30-50 (143)
316 2chq_A Replication factor C sm 70.6 1.9 6.6E-05 42.5 2.4 22 780-801 41-62 (319)
317 2qu8_A Putative nucleolar GTP- 70.6 2.4 8.1E-05 40.8 3.0 25 775-799 27-51 (228)
318 3k53_A Ferrous iron transport 70.6 1.7 5.9E-05 43.5 2.1 21 779-799 5-25 (271)
319 2yhs_A FTSY, cell division pro 70.4 2.1 7.1E-05 49.0 2.9 170 775-965 291-468 (503)
320 1x3s_A RAS-related protein RAB 70.3 2 6.8E-05 39.0 2.3 23 778-800 16-38 (195)
321 2qmh_A HPR kinase/phosphorylas 70.3 2.3 7.9E-05 43.8 3.0 27 775-801 32-58 (205)
322 2hup_A RAS-related protein RAB 70.3 2 7E-05 40.4 2.4 26 775-800 27-52 (201)
323 3crm_A TRNA delta(2)-isopenten 70.3 1.8 6.3E-05 46.6 2.4 25 778-802 6-30 (323)
324 3bwd_D RAC-like GTP-binding pr 70.3 2 6.9E-05 38.6 2.3 22 778-799 9-30 (182)
325 3reg_A RHO-like small GTPase; 70.3 2 6.8E-05 39.7 2.3 26 775-800 21-46 (194)
326 1zj6_A ADP-ribosylation factor 70.2 2.4 8.3E-05 38.9 2.8 25 775-799 14-38 (187)
327 3pxi_A Negative regulator of g 70.1 2 6.7E-05 49.6 2.7 57 779-841 523-586 (758)
328 2cxx_A Probable GTP-binding pr 69.9 1.7 5.7E-05 39.4 1.6 21 780-800 4-24 (190)
329 1t9h_A YLOQ, probable GTPase E 69.7 1 3.6E-05 47.8 0.4 22 777-798 173-194 (307)
330 3u61_B DNA polymerase accessor 69.7 3.6 0.00012 41.6 4.2 23 779-801 50-72 (324)
331 1sgw_A Putative ABC transporte 69.6 1.7 5.9E-05 43.5 1.9 23 775-797 33-55 (214)
332 1zbd_A Rabphilin-3A; G protein 69.6 2.1 7.1E-05 39.7 2.3 23 778-800 9-31 (203)
333 1ksh_A ARF-like protein 2; sma 69.5 1.9 6.5E-05 39.3 2.0 26 776-801 17-42 (186)
334 2og2_A Putative signal recogni 69.5 2.3 7.8E-05 46.1 2.9 25 775-799 155-179 (359)
335 3a8t_A Adenylate isopentenyltr 69.3 2.4 8.3E-05 46.1 3.1 28 776-803 39-66 (339)
336 2yz2_A Putative ABC transporte 69.2 2.2 7.4E-05 43.6 2.5 23 775-797 31-53 (266)
337 2ihy_A ABC transporter, ATP-bi 69.2 2.1 7.1E-05 44.4 2.4 23 775-797 45-67 (279)
338 2atv_A RERG, RAS-like estrogen 69.1 2.2 7.5E-05 39.5 2.3 25 776-800 27-51 (196)
339 1m7b_A RND3/RHOE small GTP-bin 68.9 2 6.7E-05 39.5 1.9 23 778-800 8-30 (184)
340 2q3h_A RAS homolog gene family 68.7 2.6 8.9E-05 39.0 2.7 25 775-799 18-42 (201)
341 3pvs_A Replication-associated 68.5 3.5 0.00012 45.4 4.1 23 779-801 52-74 (447)
342 3lda_A DNA repair protein RAD5 68.3 1.9 6.6E-05 47.2 2.0 23 776-798 177-199 (400)
343 2bov_A RAla, RAS-related prote 68.3 2.3 7.9E-05 39.1 2.3 24 777-800 14-37 (206)
344 3kl4_A SRP54, signal recogniti 68.2 4.5 0.00015 45.1 4.9 42 776-819 96-137 (433)
345 2qi9_C Vitamin B12 import ATP- 68.2 2.3 7.8E-05 43.4 2.4 23 775-797 24-46 (249)
346 2r44_A Uncharacterized protein 68.1 2.1 7.1E-05 43.6 2.1 23 780-802 49-71 (331)
347 3cph_A RAS-related protein SEC 67.9 2.8 9.7E-05 38.8 2.8 25 775-799 18-42 (213)
348 3n70_A Transport activator; si 67.7 9.7 0.00033 34.7 6.2 22 780-801 27-48 (145)
349 2nq2_C Hypothetical ABC transp 67.6 2.4 8.3E-05 43.2 2.5 23 775-797 29-51 (253)
350 3cbq_A GTP-binding protein REM 67.6 2.5 8.6E-05 39.8 2.4 26 774-799 20-45 (195)
351 2gf0_A GTP-binding protein DI- 67.6 3 0.0001 38.1 2.9 24 776-799 7-30 (199)
352 2hf9_A Probable hydrogenase ni 67.5 2.5 8.5E-05 40.1 2.4 23 778-800 39-61 (226)
353 4dhe_A Probable GTP-binding pr 66.9 1.8 6.2E-05 40.7 1.3 27 774-800 26-52 (223)
354 1vg8_A RAS-related protein RAB 66.8 3.2 0.00011 38.3 2.9 26 776-801 7-32 (207)
355 2onk_A Molybdate/tungstate ABC 66.8 2.6 9E-05 42.7 2.5 21 778-798 25-45 (240)
356 1e2k_A Thymidine kinase; trans 66.4 2.7 9.4E-05 45.3 2.7 27 776-802 3-29 (331)
357 2fh5_B SR-beta, signal recogni 66.2 2.7 9.1E-05 39.4 2.3 24 777-800 7-30 (214)
358 1m2o_B GTP-binding protein SAR 66.1 2.4 8.1E-05 39.6 1.9 22 778-799 24-45 (190)
359 2e87_A Hypothetical protein PH 66.1 2.8 9.5E-05 44.1 2.6 24 776-799 166-189 (357)
360 2fg5_A RAB-22B, RAS-related pr 66.1 2.4 8.3E-05 39.3 2.0 24 777-800 23-46 (192)
361 1nrj_B SR-beta, signal recogni 65.9 2.7 9.3E-05 39.5 2.3 26 776-801 11-36 (218)
362 2gco_A H9, RHO-related GTP-bin 65.8 2.4 8.3E-05 39.7 1.9 24 777-800 25-48 (201)
363 1moz_A ARL1, ADP-ribosylation 65.8 1.6 5.4E-05 39.4 0.6 24 775-798 16-39 (183)
364 1of1_A Thymidine kinase; trans 65.7 3.1 0.00011 45.9 3.0 29 775-803 47-75 (376)
365 1um8_A ATP-dependent CLP prote 65.5 2.8 9.5E-05 43.8 2.5 23 779-801 74-96 (376)
366 2fu5_C RAS-related protein RAB 65.5 1.9 6.4E-05 39.1 1.1 23 777-799 8-30 (183)
367 1lw7_A Transcriptional regulat 65.4 3.1 0.00011 43.7 2.9 23 777-799 170-192 (365)
368 3nh6_A ATP-binding cassette SU 65.4 2.4 8.3E-05 44.9 2.1 24 775-798 78-101 (306)
369 1ega_A Protein (GTP-binding pr 64.9 3.3 0.00011 42.8 2.9 24 777-800 8-31 (301)
370 3lxx_A GTPase IMAP family memb 64.9 3.5 0.00012 40.1 2.9 28 773-800 25-52 (239)
371 3pfi_A Holliday junction ATP-d 64.9 2.9 9.9E-05 42.4 2.4 34 780-818 58-91 (338)
372 2fv8_A H6, RHO-related GTP-bin 64.8 2.6 9E-05 39.6 2.0 22 778-799 26-47 (207)
373 3hr8_A Protein RECA; alpha and 64.8 2.9 9.8E-05 45.4 2.5 24 776-799 60-83 (356)
374 2j1l_A RHO-related GTP-binding 64.8 2.6 8.7E-05 40.1 1.9 23 777-799 34-56 (214)
375 3hws_A ATP-dependent CLP prote 64.8 2.9 0.0001 43.5 2.5 22 780-801 54-75 (363)
376 3iby_A Ferrous iron transport 64.7 2.6 8.8E-05 42.7 2.0 20 780-799 4-23 (256)
377 1r6b_X CLPA protein; AAA+, N-t 64.6 6.8 0.00023 44.9 5.6 21 780-800 210-230 (758)
378 3llu_A RAS-related GTP-binding 64.6 2.7 9.4E-05 39.2 2.0 27 773-799 16-42 (196)
379 3cnl_A YLQF, putative uncharac 64.5 2.5 8.7E-05 43.2 1.9 22 778-799 100-121 (262)
380 2npi_A Protein CLP1; CLP1-PCF1 64.5 2.3 7.9E-05 47.3 1.7 25 776-800 137-161 (460)
381 3gj0_A GTP-binding nuclear pro 64.2 1.9 6.6E-05 40.8 0.9 24 775-798 13-36 (221)
382 3rlf_A Maltose/maltodextrin im 64.2 3.1 0.0001 45.8 2.6 24 775-798 27-50 (381)
383 4aby_A DNA repair protein RECN 63.9 1.9 6.5E-05 45.3 0.9 30 773-803 57-86 (415)
384 3q3j_B RHO-related GTP-binding 63.9 3.1 0.00011 39.8 2.3 22 778-799 28-49 (214)
385 4gzl_A RAS-related C3 botulinu 63.9 2.8 9.4E-05 39.6 1.9 26 774-799 27-52 (204)
386 1tq4_A IIGP1, interferon-induc 63.8 3.1 0.00011 46.0 2.6 24 776-799 68-91 (413)
387 2xtp_A GTPase IMAP family memb 63.7 5 0.00017 39.4 3.8 25 777-801 22-46 (260)
388 2yyz_A Sugar ABC transporter, 63.6 3.1 0.00011 45.1 2.5 24 775-798 27-50 (359)
389 2gza_A Type IV secretion syste 63.6 2.4 8.2E-05 45.1 1.6 26 775-800 173-198 (361)
390 3d31_A Sulfate/molybdate ABC t 63.6 2.9 9.8E-05 45.1 2.2 24 775-798 24-47 (348)
391 2bbs_A Cystic fibrosis transme 63.5 2.9 9.9E-05 43.8 2.2 23 775-797 62-84 (290)
392 4djt_A GTP-binding nuclear pro 63.5 1.8 6.2E-05 40.7 0.6 23 777-799 11-33 (218)
393 2ewv_A Twitching motility prot 63.4 3.7 0.00013 44.1 3.0 25 775-799 134-158 (372)
394 1g8p_A Magnesium-chelatase 38 63.3 2.6 8.8E-05 42.5 1.7 23 780-802 48-70 (350)
395 1jwy_B Dynamin A GTPase domain 63.2 3.6 0.00012 41.3 2.8 24 779-802 26-49 (315)
396 1mky_A Probable GTP-binding pr 63.2 4.1 0.00014 44.1 3.3 25 776-800 179-203 (439)
397 2b6h_A ADP-ribosylation factor 63.1 3.3 0.00011 38.8 2.2 24 775-798 27-50 (192)
398 1osn_A Thymidine kinase, VZV-T 63.1 3.2 0.00011 45.1 2.5 31 775-805 10-41 (341)
399 2qag_B Septin-6, protein NEDD5 63.1 3.1 0.00011 46.5 2.4 49 971-1024 256-307 (427)
400 3o47_A ADP-ribosylation factor 63.0 6.1 0.00021 41.3 4.5 25 775-799 163-187 (329)
401 3hu3_A Transitional endoplasmi 62.9 4.6 0.00016 45.2 3.7 22 780-801 241-262 (489)
402 2atx_A Small GTP binding prote 62.9 3 0.0001 38.3 2.0 23 778-800 19-41 (194)
403 3i8s_A Ferrous iron transport 62.8 3.4 0.00011 42.0 2.4 21 779-799 5-25 (274)
404 3iev_A GTP-binding protein ERA 62.8 4.7 0.00016 41.7 3.6 22 780-801 13-34 (308)
405 1tf7_A KAIC; homohexamer, hexa 62.8 2.8 9.7E-05 46.4 2.0 23 775-797 37-59 (525)
406 3cf2_A TER ATPase, transitiona 62.7 3.3 0.00011 49.6 2.7 60 774-841 510-577 (806)
407 1v5w_A DMC1, meiotic recombina 62.4 4.1 0.00014 43.0 3.0 24 776-799 121-144 (343)
408 1knx_A Probable HPR(Ser) kinas 62.3 2.4 8.1E-05 45.7 1.3 48 776-823 146-194 (312)
409 2it1_A 362AA long hypothetical 62.2 3.5 0.00012 44.7 2.6 24 775-798 27-50 (362)
410 2yc2_C IFT27, small RAB-relate 61.9 2 6.8E-05 39.5 0.6 24 776-799 19-42 (208)
411 2px0_A Flagellar biosynthesis 61.6 3.3 0.00011 43.2 2.2 24 776-799 104-127 (296)
412 1fzq_A ADP-ribosylation factor 61.4 2.7 9.1E-05 38.9 1.3 24 776-799 15-38 (181)
413 1r6b_X CLPA protein; AAA+, N-t 61.3 10 0.00034 43.5 6.2 23 779-801 490-512 (758)
414 1xjc_A MOBB protein homolog; s 61.2 4 0.00014 40.1 2.6 22 779-800 6-27 (169)
415 3d3q_A TRNA delta(2)-isopenten 61.2 4.3 0.00015 44.1 3.1 25 778-802 8-32 (340)
416 3a1s_A Iron(II) transport prot 61.1 3.7 0.00013 41.5 2.4 22 778-799 6-27 (258)
417 3dm5_A SRP54, signal recogniti 61.1 10 0.00036 42.5 6.1 24 776-799 99-122 (443)
418 1sxj_C Activator 1 40 kDa subu 61.0 3.6 0.00012 42.3 2.3 21 780-800 49-69 (340)
419 3b1v_A Ferrous iron uptake tra 60.9 4.2 0.00014 41.8 2.8 22 778-799 4-25 (272)
420 1g29_1 MALK, maltose transport 60.8 3.6 0.00012 44.7 2.4 24 775-798 27-50 (372)
421 1p6x_A Thymidine kinase; P-loo 60.5 4.1 0.00014 44.0 2.7 27 776-802 6-32 (334)
422 2qtf_A Protein HFLX, GTP-bindi 60.5 3.6 0.00012 44.2 2.2 21 780-800 182-202 (364)
423 1jr3_A DNA polymerase III subu 60.5 4.1 0.00014 41.3 2.6 24 779-802 40-63 (373)
424 1z47_A CYSA, putative ABC-tran 60.4 3.7 0.00013 44.5 2.4 24 775-798 39-62 (355)
425 1tf7_A KAIC; homohexamer, hexa 60.3 3.5 0.00012 45.7 2.3 24 776-799 280-303 (525)
426 3jvv_A Twitching mobility prot 60.2 4.5 0.00015 43.6 2.9 26 773-799 120-145 (356)
427 3sop_A Neuronal-specific septi 60.2 3.9 0.00013 42.0 2.4 21 779-799 4-24 (270)
428 1v43_A Sugar-binding transport 60.0 4 0.00014 44.4 2.6 24 775-798 35-58 (372)
429 3fvq_A Fe(3+) IONS import ATP- 60.0 3.6 0.00012 44.8 2.2 24 775-798 28-51 (359)
430 3bgw_A DNAB-like replicative h 59.7 7.8 0.00027 42.7 4.8 35 765-799 183-219 (444)
431 1sxj_B Activator 1 37 kDa subu 59.5 4 0.00014 40.3 2.3 22 780-801 45-66 (323)
432 3gd7_A Fusion complex of cysti 59.5 3.8 0.00013 44.9 2.3 24 775-798 45-68 (390)
433 2hjg_A GTP-binding protein ENG 59.5 18 0.0006 39.2 7.4 21 779-799 5-25 (436)
434 2zr9_A Protein RECA, recombina 59.3 3.6 0.00012 43.9 2.0 24 776-799 60-83 (349)
435 1oxx_K GLCV, glucose, ABC tran 59.3 3.1 0.00011 44.8 1.6 24 775-798 29-52 (353)
436 2r6a_A DNAB helicase, replicat 59.3 4.2 0.00014 44.3 2.6 24 776-799 202-225 (454)
437 1sxj_E Activator 1 40 kDa subu 59.2 3.7 0.00013 41.7 2.0 20 780-799 39-58 (354)
438 2bjv_A PSP operon transcriptio 59.1 6.2 0.00021 38.8 3.5 24 779-802 31-54 (265)
439 2pjz_A Hypothetical protein ST 59.0 4 0.00014 42.1 2.2 21 777-797 30-50 (263)
440 2z4s_A Chromosomal replication 58.9 4 0.00014 44.5 2.3 23 778-800 131-153 (440)
441 2cjw_A GTP-binding protein GEM 58.9 4.3 0.00015 38.1 2.3 22 778-799 7-28 (192)
442 2z43_A DNA repair and recombin 58.5 3.9 0.00013 42.5 2.0 24 776-799 106-129 (324)
443 1hqc_A RUVB; extended AAA-ATPa 58.3 3.4 0.00012 41.3 1.5 22 780-801 41-62 (324)
444 2bcg_Y Protein YP2, GTP-bindin 58.2 4 0.00014 38.0 1.9 23 778-800 9-31 (206)
445 2i1q_A DNA repair and recombin 58.1 4.6 0.00016 41.4 2.5 24 776-799 97-120 (322)
446 2vhj_A Ntpase P4, P4; non- hyd 58.0 4.6 0.00016 44.1 2.6 22 779-800 125-146 (331)
447 2x77_A ADP-ribosylation factor 57.9 3 0.0001 38.1 1.0 23 776-798 21-43 (189)
448 1f6b_A SAR1; gtpases, N-termin 57.8 2.9 0.0001 39.4 0.9 21 779-799 27-47 (198)
449 3th5_A RAS-related C3 botulinu 62.1 2.2 7.5E-05 39.8 0.0 24 775-798 28-51 (204)
450 1tue_A Replication protein E1; 57.1 3.5 0.00012 42.7 1.4 29 773-803 56-84 (212)
451 3cpj_B GTP-binding protein YPT 57.1 4.9 0.00017 38.3 2.4 23 778-800 14-36 (223)
452 2j0v_A RAC-like GTP-binding pr 56.7 4.4 0.00015 37.9 1.9 23 777-799 9-31 (212)
453 3l0i_B RAS-related protein RAB 55.7 2.1 7.1E-05 39.9 -0.5 22 777-798 33-54 (199)
454 1sxj_A Activator 1 95 kDa subu 55.5 5.2 0.00018 44.3 2.5 23 779-801 79-101 (516)
455 1z6t_A APAF-1, apoptotic prote 55.4 6.4 0.00022 43.1 3.2 24 777-800 147-170 (591)
456 3def_A T7I23.11 protein; chlor 55.4 11 0.00037 37.7 4.6 26 777-802 36-61 (262)
457 2pt7_A CAG-ALFA; ATPase, prote 55.1 3.3 0.00011 43.7 0.9 25 776-800 170-194 (330)
458 1yqt_A RNAse L inhibitor; ATP- 54.5 5.3 0.00018 45.0 2.5 25 775-799 45-69 (538)
459 2obl_A ESCN; ATPase, hydrolase 54.5 5.2 0.00018 42.9 2.3 27 775-801 69-95 (347)
460 1f5n_A Interferon-induced guan 54.4 6.9 0.00024 45.3 3.4 28 776-803 37-64 (592)
461 1jal_A YCHF protein; nucleotid 54.0 5.9 0.0002 43.2 2.6 25 777-801 2-26 (363)
462 2q6t_A DNAB replication FORK h 53.7 5.3 0.00018 43.4 2.2 118 661-799 99-222 (444)
463 2dpy_A FLII, flagellum-specifi 53.1 5.5 0.00019 44.0 2.3 28 773-800 153-180 (438)
464 2j37_W Signal recognition part 52.9 5.6 0.00019 45.1 2.3 26 776-801 100-125 (504)
465 1p9r_A General secretion pathw 52.7 6.9 0.00024 43.1 2.9 25 775-799 165-189 (418)
466 3nbx_X ATPase RAVA; AAA+ ATPas 52.6 5.4 0.00019 45.0 2.1 22 780-801 44-65 (500)
467 1g41_A Heat shock protein HSLU 52.6 5.8 0.0002 44.4 2.4 21 781-801 54-74 (444)
468 3k1j_A LON protease, ATP-depen 52.5 5.9 0.0002 44.8 2.4 26 777-802 60-85 (604)
469 1yqt_A RNAse L inhibitor; ATP- 52.5 6.2 0.00021 44.5 2.6 24 775-798 310-333 (538)
470 2aka_B Dynamin-1; fusion prote 52.2 5.2 0.00018 39.6 1.7 23 778-800 27-49 (299)
471 3r7w_A Gtpase1, GTP-binding pr 51.8 6.2 0.00021 40.7 2.3 23 778-800 4-26 (307)
472 3lvq_E ARF-GAP with SH3 domain 51.5 17 0.00057 39.5 5.6 27 775-801 320-346 (497)
473 1e69_A Chromosome segregation 51.5 9.4 0.00032 39.5 3.6 28 775-803 23-50 (322)
474 3exa_A TRNA delta(2)-isopenten 51.5 7.8 0.00027 42.2 3.0 27 777-803 3-29 (322)
475 3ozx_A RNAse L inhibitor; ATP 51.4 6.4 0.00022 44.6 2.4 24 775-798 292-315 (538)
476 2ffh_A Protein (FFH); SRP54, s 51.4 16 0.00053 40.7 5.4 24 776-799 97-120 (425)
477 3b5x_A Lipid A export ATP-bind 51.2 6.7 0.00023 44.1 2.6 24 775-798 367-390 (582)
478 3ux8_A Excinuclease ABC, A sub 51.0 5 0.00017 45.8 1.6 24 775-798 346-369 (670)
479 1h65_A Chloroplast outer envel 51.0 6.9 0.00024 39.1 2.4 25 777-801 39-63 (270)
480 2yl4_A ATP-binding cassette SU 51.0 5.9 0.0002 44.7 2.1 24 775-798 368-391 (595)
481 1u94_A RECA protein, recombina 50.9 6.7 0.00023 42.2 2.4 24 776-799 62-85 (356)
482 2g3y_A GTP-binding protein GEM 50.8 9.5 0.00032 37.4 3.3 24 776-799 36-59 (211)
483 1qvr_A CLPB protein; coiled co 50.3 13 0.00045 43.6 4.9 24 778-801 589-612 (854)
484 3t5d_A Septin-7; GTP-binding p 50.1 5.5 0.00019 40.0 1.5 22 778-799 9-30 (274)
485 2ohf_A Protein OLA1, GTP-bindi 49.9 6.5 0.00022 43.5 2.1 26 775-800 20-45 (396)
486 1udx_A The GTP-binding protein 49.7 4.5 0.00015 44.6 0.9 26 775-800 155-180 (416)
487 3b60_A Lipid A export ATP-bind 49.6 6.3 0.00022 44.3 2.1 23 775-797 367-389 (582)
488 2v3c_C SRP54, signal recogniti 49.5 6.2 0.00021 43.6 1.9 22 778-799 100-121 (432)
489 2qgz_A Helicase loader, putati 49.5 8.6 0.00029 40.0 2.9 23 778-800 153-175 (308)
490 3ozx_A RNAse L inhibitor; ATP 49.0 8.4 0.00029 43.6 2.9 25 775-799 23-47 (538)
491 3euj_A Chromosome partition pr 48.9 7.6 0.00026 44.0 2.5 22 778-799 30-51 (483)
492 3dpu_A RAB family protein; roc 48.7 7.1 0.00024 43.2 2.3 24 777-800 41-64 (535)
493 2oap_1 GSPE-2, type II secreti 48.4 5.9 0.0002 44.7 1.6 25 776-800 259-283 (511)
494 2dby_A GTP-binding protein; GD 48.1 7.8 0.00027 42.1 2.4 22 780-801 4-25 (368)
495 1nij_A Hypothetical protein YJ 47.3 8.5 0.00029 40.0 2.5 23 779-801 6-28 (318)
496 3foz_A TRNA delta(2)-isopenten 46.8 8.3 0.00028 41.8 2.4 27 777-803 10-36 (316)
497 3qf4_B Uncharacterized ABC tra 46.7 7.8 0.00027 43.9 2.2 24 775-798 379-402 (598)
498 4a82_A Cystic fibrosis transme 46.5 6.5 0.00022 44.3 1.5 23 775-797 365-387 (578)
499 2xxa_A Signal recognition part 46.4 18 0.00062 40.0 5.0 40 776-818 100-140 (433)
500 2wkq_A NPH1-1, RAS-related C3 46.1 10 0.00035 37.7 2.7 25 775-799 153-177 (332)
No 1
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.94 E-value=0.0042 Score=62.30 Aligned_cols=105 Identities=20% Similarity=0.310 Sum_probs=56.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc-------cchHH-------HHHHhhcCCceEEEec
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG-------KYWQK-------VADERRRKPYSVMLAD 841 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG-------rYWqk-------Va~eR~kkp~si~lAD 841 (1112)
.+.++++-|+|||||||+++.|.......|. ++-.+.+|.+.. ..+.. +..+..++ .+.|.|
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~--~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~--~~vIiD 78 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNI--DVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN--YWVIVD 78 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC--CEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT--SEEEEC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCC--EEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC--CEEEEe
Confidence 4678999999999999999999775222232 333345565431 11111 11112233 455556
Q ss_pred CCCCChhHHHHHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhcc
Q 046016 842 KNAPNEEVWRQIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERV 895 (1112)
Q Consensus 842 KNaP~~~vWr~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~ 895 (1112)
-.....+....+..++.......+-|.=+. + ..+|+-|..+|.
T Consensus 79 ~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~--------~---~e~~~~R~~~R~ 121 (260)
T 3a4m_A 79 DTNYYNSMRRDLINIAKKYNKNYAIIYLKA--------S---LDVLIRRNIERG 121 (260)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCEEEEEEEEC--------C---HHHHHHHHHHTT
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEEEeC--------C---HHHHHHHHHhCC
Confidence 544444445556666654322111111111 1 357888988874
No 2
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.50 E-value=0.01 Score=64.19 Aligned_cols=141 Identities=16% Similarity=0.221 Sum_probs=83.1
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchHHHHHHhh---cCCceEEEecCCCCChhHH
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQKVADERR---RKPYSVMLADKNAPNEEVW 850 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWqkVa~eR~---kkp~si~lADKNaP~~~vW 850 (1112)
.....+|++-|.|||||||||+.|....| ...+-.|.++ .|+.+..... +...+|+ .|-......-.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~-------~~~i~~D~~~--~~~~~~~~~~~~l~~g~~vI-iD~~~~~~~~r 324 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAG-------YVHVNRDTLG--SWQRCVSSCQAALRQGKRVV-IDNTNPDVPSR 324 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGT-------CEECCGGGSC--SHHHHHHHHHHHHHTTCCEE-EESCCCSHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcC-------cEEEccchHH--HHHHHHHHHHHHHhcCCcEE-EeCCCCCHHHH
Confidence 34567889999999999999999966432 2345567774 4555444322 3444454 55444454444
Q ss_pred HHHHHHhccCCccccccccCCCCCCCCcCchHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCCchhhhHHH
Q 046016 851 RQIEDMCRRTRASAVPVVPDSGGTESNPFSLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGKSRKEFDGE 930 (1112)
Q Consensus 851 r~IedmC~~t~A~~VPVvpdseGt~~~PFSLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k~r~ef~se 930 (1112)
+.+..++.......+=|.-+. | ..+|+-|+.+|..|++. + ......++-.++.-|+--+.
T Consensus 325 ~~~~~~~~~~~~~~~~v~l~~--------~---~e~l~~R~~~R~~~~~~-~--~~~~~~~~~~~~~~~e~P~~------ 384 (416)
T 3zvl_A 325 ARYIQCAKDAGVPCRCFNFCA--------T---IEQARHNNRFREMTDPS-H--APVSDMVMFSYRKQFEPPTL------ 384 (416)
T ss_dssp HHHHHHHHHHTCCEEEEEECC--------C---HHHHHHHHHHHHHHCTT-C--CCCCHHHHHHHHHHCCCCCG------
T ss_pred HHHHHHHHHcCCeEEEEEEeC--------C---HHHHHHHHHhhcccCCC-c--CCCCHHHHHHHHHhcCCCCc------
Confidence 555555544332211111111 1 35899999999876542 2 22233456666666665433
Q ss_pred HHHHhcCcEeeeccc
Q 046016 931 LVERFGSLIKMPLLK 945 (1112)
Q Consensus 931 L~~rF~~lVkmPllk 945 (1112)
.+.|..++.+++..
T Consensus 385 -~E~fd~v~~v~~~~ 398 (416)
T 3zvl_A 385 -AEGFLEILEIPFRL 398 (416)
T ss_dssp -GGTCSEEEEECCCC
T ss_pred -ccCCcEEEEEeccc
Confidence 34688899988764
No 3
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.22 E-value=0.013 Score=58.53 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=31.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
..+.++++-|.||||||||++.|....++ ++..+.||.++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D~~r 69 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGDSFR 69 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecHHHH
Confidence 45688999999999999999999776542 45567777763
No 4
>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4}
Probab=96.21 E-value=0.01 Score=64.89 Aligned_cols=138 Identities=15% Similarity=0.069 Sum_probs=89.2
Q ss_pred HHhhhcccCccCCcchHHHHHHHHHHHHcCceeEEEEEeecceEEEeecCCCcccc--cccCCCcchhhHHHHHHHHHHH
Q 046016 199 EVRATFYPKFENEKSDQEIRMRMIEVVSNGLAAVEVTLKHSGSLFMYAGHKGGAYA--KNSFGNVYTAVGVFVLGRMLRE 276 (1112)
Q Consensus 199 qirAtFyPKFENEksDqeiR~rMie~Vs~G~~~lEVTLKHSGSLfmyaG~~Ggaya--KNS~gN~~TAvGv~vL~r~~r~ 276 (1112)
+|-+.=||||=|=+.-.+... |+ =.+.++|+.|=-|||+.-.-+.|-.++ |.|++..++.-+.-
T Consensus 68 ~Iv~R~~~KFFN~~E~~~t~~--l~----~~~pv~V~eK~DGslv~~~~~~G~l~~~SKgs~~~~~a~~~~~-------- 133 (375)
T 2c5u_A 68 RIASRPMEKFFNLNENPFTMN--ID----LNDVDYILTKEDGSLVSTYLDGDEILFKSKGSIKSEQALMANG-------- 133 (375)
T ss_dssp EEEECCCCCCCBTTSSGGGSS--CC----GGGEEEEEEECCSEEEEEEEETTEEEEEETTBSSSHHHHHHHH--------
T ss_pred eEEEcCCCCCccCCCcccccc--cc----cCCCEEEEEecCCeEEEEEEECCEEEEEeCCCCCChHHHHHHH--------
Confidence 455556999976443333322 22 136899999999999765556554554 99998886543321
Q ss_pred HhhhH--HHHhHHHHHHHHhhcceEEEeeehh----hhccCCCCCCCCCceEEeeeeccCCCCCcccccHHHHHHHHhcC
Q 046016 277 AWGAQ--ALKKQVEFNDFLEKNRMCISMELVT----AVLGDHGQRPREDYAVVTAVTELGNGKPKFYSTPEIIAFCRKWR 350 (1112)
Q Consensus 277 ~wg~~--a~~~Q~efndfle~nRl~iSmElVT----avLGdHGqrP~~dY~VvTAvteL~ngkP~FysT~e~i~fCrkwr 350 (1112)
|-++ -..+++.|.+ +....+++-||++. -|+.. + ..+ +++-++-+..+|+ |+++.++.++|. ||
T Consensus 134 -~l~~~~~~~l~~~~~~-l~~~~~t~~fE~~~pen~hVl~Y-~---~~~-L~L~~i~~n~tg~--~l~~~e~~~~a~-~g 203 (375)
T 2c5u_A 134 -ILMNINHHRLRDRLKE-LAEDGFTANFEFVAPTNRIVLAY-Q---EMK-IILLNVRENETGE--YISYDDIYKDAT-LR 203 (375)
T ss_dssp -HHHSGGGHHHHHHHHH-HHHTTEEEEEEEECTTSCSSSCC-S---SCE-EEEEEEEETTTCC--BCCHHHHHHCTT-TG
T ss_pred -HHhhhcchHHHHHHHH-hcCCCCEEEEEEcCCCCceeccC-C---CCC-EEEEEEEEcCCCc--EecHHHHHHHHh-hC
Confidence 2121 1234444544 34566999999986 12222 1 223 7778888776664 699999999999 99
Q ss_pred CCCCceEeee
Q 046016 351 LPTNHVWLFS 360 (1112)
Q Consensus 351 LPtNhvWlfs 360 (1112)
+|+-..|-|.
T Consensus 204 ~~~V~~~~~~ 213 (375)
T 2c5u_A 204 PYLVERYEID 213 (375)
T ss_dssp GGBCCEEECS
T ss_pred CCcCceeecc
Confidence 9999988753
No 5
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.04 E-value=0.0021 Score=60.02 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=25.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLG 805 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g 805 (1112)
.|.+++|-|+|||||||+|+.|.+..+..|
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 478999999999999999999988666555
No 6
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.64 E-value=0.0042 Score=57.49 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=23.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.|.++++-|.|||||||+|+.|.+..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999997654
No 7
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.61 E-value=0.0031 Score=59.03 Aligned_cols=43 Identities=26% Similarity=0.558 Sum_probs=31.8
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
...|.++.|-|+|||||||+++.|....+.-|. ++..+.||.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~--~~~~~~~d~~ 52 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGY--RVEVLDGDWA 52 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTC--CEEEEEHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCC--eEEEeeHHHH
Confidence 357899999999999999999998665433222 4556667765
No 8
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.55 E-value=0.0045 Score=56.88 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=24.7
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGLG 805 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~g 805 (1112)
|.++++-|+|||||||+|+.|.+..|.-|
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999987655443
No 9
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.54 E-value=0.0059 Score=57.13 Aligned_cols=29 Identities=17% Similarity=0.485 Sum_probs=24.9
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGL 804 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~ 804 (1112)
.|++++|-|+|||||||+|+.|.+..+|+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~ 31 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPAN 31 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCC
Confidence 57899999999999999999998776433
No 10
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.50 E-value=0.0053 Score=54.71 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=20.0
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
+++++-|.|||||||+|+.| +..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47889999999999999999 544
No 11
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.32 E-value=0.0089 Score=56.41 Aligned_cols=29 Identities=28% Similarity=0.562 Sum_probs=24.4
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.....+++|-|.|||||||+|+.|.+..|
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35567899999999999999999987653
No 12
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.25 E-value=0.0038 Score=60.09 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=32.3
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCC-CCCCCcceecccccccC
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPG-GLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pg-g~g~~rpv~sLmGD~iK 819 (1112)
...|.++++-|+|||||||+|+.|....+ ..| .++..+.||.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g--~~~~~~~~d~~r 66 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR--VHAYRLDGDNIR 66 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC--CCEEEECHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccC--CcEEEECChHHh
Confidence 35688999999999999999999876544 222 255666677664
No 13
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.24 E-value=0.0042 Score=56.98 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=23.9
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGD 806 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~ 806 (1112)
.++++-|+|||||||+|+.|.+..++.|-
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~ 30 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGI 30 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 36788999999999999999886665543
No 14
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.18 E-value=0.007 Score=56.02 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=23.1
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.|.++++-|+|||||||+|+.|.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999997754
No 15
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.17 E-value=0.01 Score=53.98 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
.++++-|.|||||||+|+.|.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4788999999999999999987
No 16
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.13 E-value=0.008 Score=55.21 Aligned_cols=25 Identities=32% Similarity=0.628 Sum_probs=22.2
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
+.+|++-|.|||||||+|+.|.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987654
No 17
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.90 E-value=0.013 Score=54.44 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=24.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+|-++.+-|.||||||||++.|...+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 568899999999999999999997764
No 18
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.88 E-value=0.009 Score=55.00 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=18.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+.++++-|.|||||||+++.|.+..|
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999976543
No 19
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.87 E-value=0.011 Score=56.12 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=25.2
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
....++++++-|.|||||||+|+.|.+..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 55678899999999999999999997654
No 20
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.81 E-value=0.011 Score=55.77 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
..|.++++-|.|||||||+|+.|.+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999976543
No 21
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.80 E-value=0.0094 Score=55.27 Aligned_cols=26 Identities=27% Similarity=0.574 Sum_probs=22.9
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+.++++-|.|||||||+|+.|.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999997654
No 22
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.67 E-value=0.011 Score=56.84 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=28.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
.|++++|-|+|||||||+|+.|.+..| . .++-++|.++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~---~~i~~d~~~~ 40 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH---A---AHLATGDMLR 40 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC---C---EEEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC---c---eEEehhHHHH
Confidence 578999999999999999999977543 1 2344566654
No 23
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.45 E-value=0.013 Score=54.36 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.3
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+++.+-|+|||||||+|+.|.+..+
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcC
Confidence 3678899999999999999977554
No 24
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.38 E-value=0.015 Score=54.63 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=24.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
..|.++.+-|+|||||||+|+.|.+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999976543
No 25
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.30 E-value=0.012 Score=56.85 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=24.1
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+..+++++|-|+|||||||+|+.|.+..|
T Consensus 2 ~~~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 2 LADPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp -CCSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35667899999999999999999977654
No 26
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.28 E-value=0.02 Score=52.85 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=24.7
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
++.+|-++++-|.||||||||++.|....
T Consensus 4 ~~~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 4 TNHDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp CCTTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 44678899999999999999999986643
No 27
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.27 E-value=0.019 Score=52.79 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=22.8
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
|.++++-|.|||||||+++.|.+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56889999999999999999987654
No 28
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.26 E-value=0.012 Score=56.96 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
..|+.++|-|+|||||||+|+.|.+..
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999997654
No 29
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.25 E-value=0.019 Score=53.65 Aligned_cols=26 Identities=23% Similarity=0.606 Sum_probs=23.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|.++.+-|.|||||||||+.|...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999999998764
No 30
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.22 E-value=0.017 Score=53.75 Aligned_cols=43 Identities=28% Similarity=0.366 Sum_probs=29.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
.+|.++.+-|.|||||||+++.|.......| .|+-.+-||.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g--~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHG--IPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCC--CcEEEECChHHH
Confidence 3588899999999999999999866431112 255555666654
No 31
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.20 E-value=0.017 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.6
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+|++-|.|||||||+|+.|.+..|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 678899999999999999976543
No 32
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.20 E-value=0.019 Score=52.68 Aligned_cols=28 Identities=29% Similarity=0.564 Sum_probs=23.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
..+.++++-|.|||||||+|+.|.+..|
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456889999999999999999976543
No 33
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.13 E-value=0.019 Score=54.97 Aligned_cols=29 Identities=21% Similarity=0.166 Sum_probs=25.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
+.|.++++-|.||||||||++.|.+..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 57889999999999999999999876543
No 34
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.01 E-value=0.016 Score=53.79 Aligned_cols=27 Identities=33% Similarity=0.652 Sum_probs=23.1
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+.+|++-|.|||||||+|+.|.+..|
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999977543
No 35
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.92 E-value=0.02 Score=54.61 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=23.3
Q ss_pred cccCCCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 771 EVQKDEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 771 ~v~k~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.....+|-++.+-|.||||||||++.|....
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3344678899999999999999999996654
No 36
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.88 E-value=0.024 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.2
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
+++.+-|.|||||||+|+.|.+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 367788999999999999986643
No 37
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.88 E-value=0.021 Score=55.35 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=22.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
..+++++|-|.|||||||+|+.|.+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346788999999999999999997654
No 38
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.69 E-value=0.023 Score=54.13 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=23.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+|-++++-|.||||||||++.|.+..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 567789999999999999999997654
No 39
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.69 E-value=0.028 Score=56.09 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=25.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
..|.++.|-|+|||||||+|+.|.+..+.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 47899999999999999999999776554
No 40
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.67 E-value=0.032 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.7
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
|-++.+-|-||||||||++.|..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 56788899999999999999975
No 41
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.62 E-value=0.025 Score=55.29 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=28.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
..++.++|-|+|||||||+|+.|-+..| . .++-.+|++
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~---~---~~i~~d~li 51 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC---V---CHLATGDML 51 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT---C---EEEEHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---C---ceecHHHHH
Confidence 4567899999999999999999976643 1 234456655
No 42
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.60 E-value=0.029 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=20.5
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
+++.+-|.|||||||+|+.|.+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 367888999999999999997654
No 43
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.54 E-value=0.025 Score=51.49 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=21.2
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pg 802 (1112)
+++++-|.|||||||+|+.|.+..|
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678899999999999999977543
No 44
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.50 E-value=0.017 Score=57.42 Aligned_cols=36 Identities=33% Similarity=0.615 Sum_probs=30.5
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
|+++|-|-|||||+|+|+.|.+..| -+|+-+||+++
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g------~~~istGdllR 36 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKG------FVHISTGDILR 36 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC------CEEEEHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC------CeEEcHHHHHH
Confidence 4677889999999999999987663 46888999986
No 45
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.42 E-value=0.034 Score=52.54 Aligned_cols=26 Identities=19% Similarity=0.553 Sum_probs=23.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
..|.++++-|.|||||||+|+.|.+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35778999999999999999999776
No 46
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.42 E-value=0.027 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.5
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
|.++++-|.||||||||++.|....
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5678899999999999999996654
No 47
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.39 E-value=0.039 Score=52.62 Aligned_cols=43 Identities=26% Similarity=0.344 Sum_probs=30.2
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
..+|-++++-|.+|||||||++.|....+.-|. .+..+.||.+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~--~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGK--LCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCc--eEEEecCchh
Confidence 467899999999999999999998665431122 2234556654
No 48
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.11 E-value=0.028 Score=53.26 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.8
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
..+|++-|.|||||||||+.|....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688899999999999999997654
No 49
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.06 E-value=0.034 Score=54.70 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+.++++-|.|||||||||+.|.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35788999999999999999997654
No 50
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.05 E-value=0.032 Score=54.54 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=26.4
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
++++|-|+|||||||+|+.|.+..| + .++-.||+++
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg-~-----~~i~~dd~~r 36 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYS-L-----AHIESGGIFR 36 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT-C-----EEEEHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-C-----eEEchHHHHH
Confidence 4688899999999999999977543 2 3444566553
No 51
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.89 E-value=0.041 Score=54.76 Aligned_cols=30 Identities=13% Similarity=-0.022 Sum_probs=24.6
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
...|.++.|=|++||||||+|+.|.+...+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 357899999999999999999999776543
No 52
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.86 E-value=0.032 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=20.2
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
++++-|.|||||||+|+.|.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 67889999999999999997654
No 53
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.76 E-value=0.055 Score=55.79 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=28.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
..|.++++-|.|||||||||+.|.+...+ .+.++.+|.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~-----~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG-----NVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT-----CCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEechHh
Confidence 45789999999999999999999875421 1234456655
No 54
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.74 E-value=0.024 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.5
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
++.|-|+|||||||||+.|....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 677899999999999999876543
No 55
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.62 E-value=0.041 Score=50.98 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=21.1
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
+-++++-|.|||||||+++.|.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999999996654
No 56
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.58 E-value=0.032 Score=51.87 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=20.9
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+|++-|.|||||||+|+.|.+..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678889999999999999976543
No 57
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.55 E-value=0.037 Score=51.42 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=21.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+.+|++-|.||||||++|+.|.+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 35567899999999999999987654
No 58
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.39 E-value=0.062 Score=50.31 Aligned_cols=26 Identities=19% Similarity=0.432 Sum_probs=22.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|-++.+-|-+|||||||++.|...
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 36778899999999999999998664
No 59
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.32 E-value=0.076 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.6
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+++|.+-|.|||||||+|+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 368899999999999999999965
No 60
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.25 E-value=0.048 Score=51.94 Aligned_cols=24 Identities=17% Similarity=0.506 Sum_probs=20.0
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
+.+++-|.|||||||+|+.|.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 356778999999999999996654
No 61
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.23 E-value=0.061 Score=53.61 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=29.3
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
...++++++-|.|||||||+|+.|.+..| -.|.-.||++
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g------~~~is~~~~~ 64 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHC------YCHLSTGDLL 64 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHC------CEEEEHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhC------CeEEecHHHH
Confidence 45788999999999999999999976542 2344455654
No 62
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.10 E-value=0.045 Score=52.63 Aligned_cols=23 Identities=13% Similarity=0.236 Sum_probs=20.0
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.++|-|+|||||||+|+.|.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999997754
No 63
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.05 E-value=0.062 Score=51.27 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=25.0
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
.+++-|.|||||||+|+.|.+..|- .+.-+||+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~------~~i~~d~~~r 36 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGI------PHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC------CEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC------cEEeHHHHHH
Confidence 4677899999999999999665431 2344556554
No 64
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.97 E-value=0.072 Score=50.67 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.2
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
..+|.++.+-|-|||||||||+.|....
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568899999999999999999997654
No 65
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.87 E-value=0.084 Score=51.82 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=24.7
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
...+|.++-|-|+.|||||||++-|...
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 4467999999999999999999998665
No 66
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.72 E-value=0.037 Score=62.57 Aligned_cols=42 Identities=29% Similarity=0.546 Sum_probs=34.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
.|.+|+|-|.|||||||+++.|.+..+..| +++..+.||.++
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G--~~~~~ld~D~ir 412 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARG--RKVTLLDGDVVR 412 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcC--CeEEEECchHhh
Confidence 478999999999999999999987655444 578888888763
No 67
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.67 E-value=0.1 Score=50.43 Aligned_cols=27 Identities=22% Similarity=0.624 Sum_probs=23.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+|-++.+-|-+||||||||+.|....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 468889999999999999999998754
No 68
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.63 E-value=0.063 Score=53.53 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=25.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLG 805 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g 805 (1112)
.|+++.|=|+|||||||+|+.|.+.....|
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 488999999999999999999976554444
No 69
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.44 E-value=0.091 Score=51.51 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=23.6
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
|.++.|=|++||||||+|+.|.+...|
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 678889999999999999999887644
No 70
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.42 E-value=0.1 Score=50.20 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.1
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
..+|-+|-+-|-+|||||||++.|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999998755
No 71
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.29 E-value=0.076 Score=48.77 Aligned_cols=23 Identities=35% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
++++-|.|||||||+++.|-+..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57788999999999999986654
No 72
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.27 E-value=0.24 Score=48.62 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=33.3
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc-------cchHHHHHHhhcCCceEEEec
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG-------KYWQKVADERRRKPYSVMLAD 841 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG-------rYWqkVa~eR~kkp~si~lAD 841 (1112)
|++-|-||||||+|++.|.+..+ .|+-.+.+..+.. +.+..+-.+.......|++.|
T Consensus 48 vll~G~~GtGKT~la~~la~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iD 111 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAK-----VPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFID 111 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT-----CCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEET
T ss_pred EEEECcCCCCHHHHHHHHHHHcC-----CCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhh
Confidence 55779999999999999876532 1343333333322 233444444444444566666
No 73
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.23 E-value=0.23 Score=49.08 Aligned_cols=57 Identities=19% Similarity=0.356 Sum_probs=33.4
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccc-------hHHHHHHhhcCCceEEEec
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKY-------WQKVADERRRKPYSVMLAD 841 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrY-------WqkVa~eR~kkp~si~lAD 841 (1112)
++|-|-||||||+|++.|.+..+. ++..+.+..+.++| ...+..........|++.|
T Consensus 54 ~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD 117 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFID 117 (285)
T ss_dssp EEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEE
Confidence 445599999999999999776432 44444333333332 2233333333444677777
No 74
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.18 E-value=0.096 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.6
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
.++++-|+|||||||+++.|.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999999874
No 75
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.16 E-value=0.054 Score=54.78 Aligned_cols=37 Identities=30% Similarity=0.496 Sum_probs=30.0
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
.-|+|+-|-|||||+|+|+-|.+..| -+|+-+||+++
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g------~~hIstGdllR 65 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFH------FNHLSSGDLLR 65 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHC------CEEECHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHC------CceEcHHHHHH
Confidence 34677779999999999999977653 46888999986
No 76
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.00 E-value=0.12 Score=48.16 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
....+|++-|-|||||||+|+.|.+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578899999999999999999886
No 77
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.83 E-value=0.3 Score=48.70 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=18.5
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|+|-|-||||||+|++.|.+..
T Consensus 57 vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 57 LLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp EEEESSSSSCHHHHHHHHHHHT
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 4556999999999999997765
No 78
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.71 E-value=0.1 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|.+-|-|||||||||+.|..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 678889999999999999976
No 79
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.70 E-value=0.28 Score=51.00 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=34.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc-------cchHHHHHHhhcCCceEEEec
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG-------KYWQKVADERRRKPYSVMLAD 841 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG-------rYWqkVa~eR~kkp~si~lAD 841 (1112)
.|+|++ |-||||||+|++.|.+.-.+. ++..+.+..+-+ +.+..+.+..+....+|++.|
T Consensus 46 ~~iLL~--GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iD 112 (322)
T 1xwi_A 46 RGILLF--GPPGTGKSYLAKAVATEANNS----TFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFID 112 (322)
T ss_dssp SEEEEE--SSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEE
T ss_pred ceEEEE--CCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEee
Confidence 455555 999999999999998765322 444333333322 234444444333444566666
No 80
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.58 E-value=0.097 Score=53.16 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=20.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
..|+++.|=|+|||||||+|+.|.+...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999866543
No 81
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.55 E-value=0.11 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.3
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
+.++.+-|-||||||||++.|....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999996643
No 82
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.40 E-value=0.12 Score=48.67 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=22.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.|-++.+-|-+|||||||++.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4668889999999999999999764
No 83
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.39 E-value=0.14 Score=48.51 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.6
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
.++.+-|-|||||||+|+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788899999999999999965
No 84
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.19 E-value=0.21 Score=45.62 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
+++-|-||||||+|++.+.+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6788999999999999987654
No 85
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.19 E-value=0.31 Score=47.19 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=18.4
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|+|-|-||||||+|++.|-+..
T Consensus 42 vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4567999999999999987754
No 86
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.04 E-value=0.092 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.5
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
++++-|.||||||||++.|-+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47778999999999999996654
No 87
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.02 E-value=0.17 Score=57.31 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=34.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDL 817 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~ 817 (1112)
..|.+++|-|.+||||||+.+.|.+..+-+...|++..+-||.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 3679999999999999999999988766411126888888987
No 88
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=89.85 E-value=0.14 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+-|-+|||||||+|.+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHH
Confidence 46888999999999999999985
No 89
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.85 E-value=0.18 Score=56.15 Aligned_cols=59 Identities=17% Similarity=0.387 Sum_probs=38.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccch-------HHHHH-HhhcCCceEEEec
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYW-------QKVAD-ERRRKPYSVMLAD 841 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYW-------qkVa~-eR~kkp~si~lAD 841 (1112)
-.|+|+| |-||||||.|++.|-+.. |. |+-.+.|..+-++|- ..+-+ +|...| +|++.|
T Consensus 215 prGvLLy--GPPGTGKTllAkAiA~e~---~~--~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP-~IifiD 281 (434)
T 4b4t_M 215 PKGALMY--GPPGTGKTLLARACAAQT---NA--TFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAP-TIIFID 281 (434)
T ss_dssp CCEEEEE--SCTTSSHHHHHHHHHHHH---TC--EEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCS-EEEEEE
T ss_pred CCeeEEE--CcCCCCHHHHHHHHHHHh---CC--CEEEEehhhhhhcccchHHHHHHHHHHHHHhcCC-eEEeec
Confidence 4577766 889999999999996543 22 666676666666664 23322 344456 455555
No 90
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.77 E-value=0.16 Score=48.74 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=23.6
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
..+|.++.+-|-+|||||||++.|...
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999998653
No 91
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.75 E-value=0.19 Score=51.81 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=39.3
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc------cchHHHHHHhhcCCceEEEecCCCCChhHHHHH
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG------KYWQKVADERRRKPYSVMLADKNAPNEEVWRQI 853 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG------rYWqkVa~eR~kkp~si~lADKNaP~~~vWr~I 853 (1112)
+=|-|.|||||||+|+.|.+..| -.|+-+||+++- .+++++.+-..++ +-.|.+-+...|
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g------~~~is~gdllR~~~~~~t~lG~~i~~~~~~G--------~lvpdei~~~ll 76 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG------IPQISTGDMLRAAVKAGTPLGVEAKTYMDEG--------KLVPDSLIIGLV 76 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT------CCEECHHHHHHHHHHTTCHHHHHHHHHHTTT--------CCCCHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHhC------CCeeechHHHHHhccCCChHHHHHHHHHhhc--------cccccHHHHHHH
Confidence 34569999999999999876542 246678887752 3455554443332 344665555555
Q ss_pred HH
Q 046016 854 ED 855 (1112)
Q Consensus 854 ed 855 (1112)
++
T Consensus 77 ~~ 78 (230)
T 3gmt_A 77 KE 78 (230)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 92
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.72 E-value=0.13 Score=50.44 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=23.6
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
++..|.++.+-|.|||||||+++.|...
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 6678999999999999999999998654
No 93
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.37 E-value=0.38 Score=53.61 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=30.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccch
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYW 823 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYW 823 (1112)
-.|+|+| |-||||||.|++.|-+..| .|+-.+.|..+-++|-
T Consensus 215 prGvLL~--GPPGtGKTllAkAiA~e~~-----~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 215 PKGVLLY--GPPGTGKTLLAKAVAATIG-----ANFIFSPASGIVDKYI 256 (437)
T ss_dssp CCEEEEE--SCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGTCCSSS
T ss_pred CCeEEEE--CCCCCcHHHHHHHHHHHhC-----CCEEEEehhhhccccc
Confidence 4688877 8999999999999966433 2666666665655554
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=89.28 E-value=0.17 Score=47.11 Aligned_cols=25 Identities=40% Similarity=0.541 Sum_probs=21.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+|-.+++-|-||||||+|++.|.+.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4667888899999999999988653
No 95
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.05 E-value=0.19 Score=49.77 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=32.3
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCCCC---CCcce-ecccccccCccchHHHH
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGGLG---DNRPI-HTLMGDLTKGKYWQKVA 827 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg~g---~~rpv-~sLmGD~iKGrYWqkVa 827 (1112)
-++|.+-|-|||||||+|+.|.+..|--. -.+.+ .+-++|..+...|..+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~ 76 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKA 76 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhh
Confidence 36888999999999999999977554210 01123 33466666654454443
No 96
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.96 E-value=0.2 Score=50.85 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=24.5
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
...|+++.|-|++||||||+++.|.+..+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356899999999999999999998665433
No 97
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.75 E-value=0.16 Score=51.82 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=23.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
-.|.++.|-|+|||||||+|+.|.+...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999865443
No 98
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.74 E-value=0.17 Score=51.04 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=23.6
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.|.++.|=|++||||||+|+.|.+..+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999999876543
No 99
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=88.67 E-value=0.33 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=20.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
..| +++-|-||||||+|++.|.+..
T Consensus 49 ~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 346 6677999999999999987654
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=88.60 E-value=0.2 Score=47.50 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|.++-.-|-+|||||||++.|...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 57888999999999999999998664
No 101
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.58 E-value=0.21 Score=50.07 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+|.++.+-|-+|||||||+|.|.+..|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4688999999999999999999965543
No 102
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.40 E-value=0.16 Score=49.33 Aligned_cols=24 Identities=29% Similarity=0.690 Sum_probs=17.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|-++.+-|-+|||||||++.|.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 568889999999999999999996
No 103
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.30 E-value=0.19 Score=50.38 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=22.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.|.++.|=|++||||||+|+.|.+...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 378889999999999999999865443
No 104
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.21 E-value=0.52 Score=52.34 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=30.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccch
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYW 823 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYW 823 (1112)
..|+|+| |-||||||.|++.|-+..| .|+-.+.|..+-++|-
T Consensus 206 prGiLL~--GPPGtGKT~lakAiA~~~~-----~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 206 PRGVLLY--GPPGTGKTMLVKAVANSTK-----AAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CCEEEEE--SCTTTTHHHHHHHHHHHHT-----CEEEEEEGGGTCCSSC
T ss_pred CceEEEE--CCCCCCHHHHHHHHHHHhC-----CCeEEEecchhhcccc
Confidence 4577766 8899999999999966432 3666666666666664
No 105
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=88.16 E-value=0.14 Score=59.49 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=29.6
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
.|.+|+|-|+|||||||+++.|.+.....|. ++-.+-||.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~--~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGI--PCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC--CEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--eEEEechHHh
Confidence 6899999999999999999998775421122 4444445544
No 106
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=88.09 E-value=0.6 Score=47.72 Aligned_cols=41 Identities=32% Similarity=0.559 Sum_probs=26.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKY 822 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrY 822 (1112)
..| +.+-|-||||||+|++.|.+..+ - +.-.+.|..+..+|
T Consensus 44 ~~G--vlL~Gp~GtGKTtLakala~~~~---~--~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 44 PAG--VLLAGPPGCGKTLLAKAVANESG---L--NFISVKGPELLNMY 84 (274)
T ss_dssp CSE--EEEESSTTSCHHHHHHHHHHHTT---C--EEEEEETTTTCSST
T ss_pred CCe--EEEECCCCCcHHHHHHHHHHHcC---C--CEEEEEcHHHHhhh
Confidence 356 55669999999999999866432 1 23344454444444
No 107
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=87.98 E-value=0.5 Score=51.48 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=19.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.|+|++ |-||||||+|++.|-+..
T Consensus 168 ~~vLL~--GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLF--GPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEE--CSTTSSHHHHHHHHHHHC
T ss_pred ceEEEE--CCCCCCHHHHHHHHHHHc
Confidence 455544 999999999999998765
No 108
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.96 E-value=1 Score=40.81 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=18.7
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
-+=|.+.|-||||||+|++-+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34577889999999999977654
No 109
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=87.93 E-value=0.2 Score=49.92 Aligned_cols=48 Identities=23% Similarity=0.350 Sum_probs=29.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCC--CCcceecccccccCccch
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLG--DNRPIHTLMGDLTKGKYW 823 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g--~~rpv~sLmGD~iKGrYW 823 (1112)
.+.-|+|-|=||||||+|++.|.+..+..+ .+.|+..+....+-++|+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~ 115 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYI 115 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSST
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcc
Confidence 344577889999999999987655433222 233555444444445544
No 110
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.77 E-value=0.1 Score=59.44 Aligned_cols=43 Identities=26% Similarity=0.507 Sum_probs=33.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
..|.+|+|-|+|||||||+++.|.+..+..| .+++..+-||.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G-~~~~~~lD~D~i 436 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQG-GRSVSLLLGDTV 436 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHC-SSCEEEEEHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccC-CceEEEECcHHH
Confidence 3578999999999999999999987655322 136777778865
No 111
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=87.75 E-value=0.35 Score=50.95 Aligned_cols=24 Identities=33% Similarity=0.692 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.|+|++ |-||||||+|++.|.+..
T Consensus 85 ~~iLL~--GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLY--GPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEE--CSTTSCHHHHHHHHHHHH
T ss_pred ceEEEE--CCCCCcHHHHHHHHHHHh
Confidence 455555 999999999999998765
No 112
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=87.67 E-value=0.25 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=21.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|=++-+-|-||||||||++.|..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567888999999999999999854
No 113
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.66 E-value=0.23 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=18.7
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
|+++ -|-||||||+|++.|-+..
T Consensus 38 ~lLl--~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 38 ILGI--WGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEE--EECTTSCHHHHHHHHHHHH
T ss_pred EEEE--ECCCCCCHHHHHHHHHHHh
Confidence 4444 4999999999999997765
No 114
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.53 E-value=0.17 Score=51.93 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.1
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
|-+|++-|.||||||||++.|....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 7789999999999999999996654
No 115
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.33 E-value=0.26 Score=55.27 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=23.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
....+|++.|.|||||||+++.|....+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4557899999999999999999866543
No 116
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=87.25 E-value=0.26 Score=50.41 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
...+|.+-|.|||||||+|+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
No 117
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=87.04 E-value=0.32 Score=44.74 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
..-+=|.+-|-||||||+|++-+.+
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 4446788899999999999999875
No 118
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.75 E-value=0.89 Score=45.08 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=36.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccc-------hHHHHHHhhcCCceEEEec
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKY-------WQKVADERRRKPYSVMLAD 841 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrY-------WqkVa~eR~kkp~si~lAD 841 (1112)
..--|+|-|-||||||+|++.|-+..+. ..+.+-..|.+-|.. -..+.+...+.+..|++.|
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~----~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iD 131 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNF----PFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVD 131 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTC----SEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCC----CEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3445677899999999999998776321 123333344444422 1223333334567788877
No 119
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=86.64 E-value=0.31 Score=46.59 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-||||||||++.|.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 456678889999999999999886
No 120
>1s68_A RNA ligase 2; ribonucleic acid ligase, RNA repair; HET: AMP; 1.90A {Enterobacteria phage T4} SCOP: d.142.2.4
Probab=86.53 E-value=10 Score=39.22 Aligned_cols=131 Identities=14% Similarity=0.178 Sum_probs=73.4
Q ss_pred ccCccCCcchHHHHHHHHHHHH-cCc--eeEEEEEeecceEEEeecCCCc--ccccccC-----CCcchhhHHHHHHHHH
Q 046016 205 YPKFENEKSDQEIRMRMIEVVS-NGL--AAVEVTLKHSGSLFMYAGHKGG--AYAKNSF-----GNVYTAVGVFVLGRML 274 (1112)
Q Consensus 205 yPKFENEksDqeiR~rMie~Vs-~G~--~~lEVTLKHSGSLfmyaG~~Gg--ayaKNS~-----gN~~TAvGv~vL~r~~ 274 (1112)
|||.||--+ .+.|+.+- .|+ +.+.||-|=-|+=+...-+.|. +.++|.+ +|.++..-+-.+
T Consensus 5 Y~~i~n~~~-----~~~~~~~~~~~~~~~~vvvtEKldG~N~~i~~~~~~i~~~sR~~~l~~~~~f~~~~~~~~~~---- 75 (249)
T 1s68_A 5 YSSLENHYN-----SKFIEKLYSLGLTGGEWVAREKIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEIILKNY---- 75 (249)
T ss_dssp CCCCEETTC-----HHHHHHHHHHTCSCSCEEEEECCCSEEEEEEEESSCEEEEETTEECCTTCCCTTTHHHHHHT----
T ss_pred cCcccchhh-----hHHHHHHHhhccCCCCEEEEEEECCcceEEEEECCEEEEEeCCcccCCCCccchHHHHHHHH----
Confidence 899999774 34444442 222 2678999988876655333232 3335543 222221111111
Q ss_pred HHHhhhHHHHhHHHHHHHHh---hcceEEEeeehhh-hccCCC-CC-CCCCceEEeeee-ccCCCCCcccccHHHHHHHH
Q 046016 275 REAWGAQALKKQVEFNDFLE---KNRMCISMELVTA-VLGDHG-QR-PREDYAVVTAVT-ELGNGKPKFYSTPEIIAFCR 347 (1112)
Q Consensus 275 r~~wg~~a~~~Q~efndfle---~nRl~iSmElVTa-vLGdHG-qr-P~~dY~VvTAvt-eL~ngkP~FysT~e~i~fCr 347 (1112)
++.+. .+.+.|. -.++-|-=|++-+ +. |+ .- |. +|.| =.|- ...+|...|++|.+..++|.
T Consensus 76 ----~~~~~----~l~~~l~~~~~~~~~i~GE~~G~~Iq--~~v~Y~~~-~Fyv-FdI~~~~~~g~~~~l~~~~~~~l~~ 143 (249)
T 1s68_A 76 ----ADSIK----AVQDIMETSAVVSYQVFGEFAGPGIQ--KNVDYCDK-DFYV-FDIIVTTESGDVTYVDDYMMESFCN 143 (249)
T ss_dssp ----HHHHH----HHHHHHHHHTEEEEEEEEEEESTTTS--SSCCCCSC-EEEE-EEEEEEETTCCEEECCHHHHHHHHH
T ss_pred ----HHHHH----HHHHHhcccCCCcEEEEEEEcccccc--CCcccCCC-eEEE-EEEEEecCCCccccCCHHHHHHHHH
Confidence 11111 2223333 2678899999843 22 22 11 32 4444 3443 55566678999999999999
Q ss_pred hcCCCCCce
Q 046016 348 KWRLPTNHV 356 (1112)
Q Consensus 348 kwrLPtNhv 356 (1112)
+.+||+=.+
T Consensus 144 ~~gl~~VP~ 152 (249)
T 1s68_A 144 TFKFKMAPL 152 (249)
T ss_dssp HHTCEESCE
T ss_pred HCCCCeecE
Confidence 999997665
No 121
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=86.53 E-value=0.3 Score=47.16 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.3
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+.+-|-||||||||+|.|....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56788999999999999986544
No 122
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.43 E-value=0.32 Score=45.57 Aligned_cols=23 Identities=22% Similarity=0.600 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
+|=++.+-|-||||||+||+.|.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 45577778999999999999985
No 123
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.31 E-value=0.27 Score=46.92 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=22.1
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
++++.+-|.||||||++|+.|....|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46788999999999999999976543
No 124
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.26 E-value=0.45 Score=53.52 Aligned_cols=43 Identities=28% Similarity=0.526 Sum_probs=31.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccchH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYWQ 824 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYWq 824 (1112)
-.|+|+| |-||||||.|++.|-+.. | .|+-.+.|..+-++|.-
T Consensus 216 prGvLLy--GPPGTGKTlLAkAiA~e~---~--~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 216 PKGVILY--GAPGTGKTLLAKAVANQT---S--ATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CSEEEEE--SSTTTTHHHHHHHHHHHH---T--CEEEEEESGGGCCSSSS
T ss_pred CCCCceE--CCCCchHHHHHHHHHHHh---C--CCEEEEEHHHhhhccCc
Confidence 4677776 889999999999996543 2 26666666666666653
No 125
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=86.18 E-value=2.3 Score=37.60 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=17.5
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+-|-||||||+|++-+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 56789999999999999865
No 126
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=86.17 E-value=0.33 Score=46.65 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|=++.+-|-+|||||||++.|...
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 56778889999999999999998653
No 127
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.79 E-value=0.3 Score=49.14 Aligned_cols=24 Identities=13% Similarity=0.275 Sum_probs=20.9
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
++++-|.||||||||++.|.+..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 678889999999999999977654
No 128
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=85.74 E-value=0.43 Score=49.74 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.1
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
...+.+|.+-|-+||||||||+.|...
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999988654
No 129
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=85.72 E-value=0.39 Score=48.12 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=24.2
Q ss_pred ccCCCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 772 VQKDEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 772 v~k~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
++...|-++.+-|-+|||||||++.|+...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 455678888899999999999999998643
No 130
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.63 E-value=0.36 Score=45.39 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|-++.+-|-||||||+||+.|..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3566888999999999999999965
No 131
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.57 E-value=0.41 Score=42.66 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.7
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
+++-|-||||||+|++.+.+.
T Consensus 46 ~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 456699999999999988764
No 132
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=85.54 E-value=0.43 Score=49.06 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=18.1
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|+|-|-||||||+|++.|-+..
T Consensus 54 vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp EEEECSSSSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 4456889999999999997763
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.52 E-value=0.76 Score=48.93 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=22.3
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHH
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
+.+|-++.+.|-+|||||||++-|.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~La 150 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLA 150 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999999874
No 134
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=85.36 E-value=0.41 Score=47.36 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=18.6
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
..+-|=||.||||||+|+.|.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 34557799999999999988654
No 135
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.30 E-value=0.47 Score=52.69 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=30.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccch
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYW 823 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYW 823 (1112)
-.|+|+| |-||||||.|+|.|-+.. |. |+-.+.|..+-.+|-
T Consensus 182 prGvLL~--GPPGTGKTllAkAiA~e~---~~--~f~~v~~s~l~sk~v 223 (405)
T 4b4t_J 182 PKGVILY--GPPGTGKTLLARAVAHHT---DC--KFIRVSGAELVQKYI 223 (405)
T ss_dssp CCCEEEE--SCSSSSHHHHHHHHHHHH---TC--EEEEEEGGGGSCSST
T ss_pred CCceEEe--CCCCCCHHHHHHHHHHhh---CC--CceEEEhHHhhcccc
Confidence 4687766 889999999999995542 22 666666666666664
No 136
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.28 E-value=0.62 Score=46.61 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=20.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
..| |++-|-||||||+|++.|....
T Consensus 73 ~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCe--EEEECCCcChHHHHHHHHHHHc
Confidence 346 6677999999999999987654
No 137
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=85.06 E-value=0.47 Score=49.91 Aligned_cols=25 Identities=20% Similarity=0.165 Sum_probs=22.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|-+|-+-|-+|||||||++.|..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 6789999999999999999998754
No 138
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=85.01 E-value=0.43 Score=49.38 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=23.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|.+|-+-|-+|||||||++.|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 67889999999999999999998664
No 139
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.98 E-value=0.33 Score=46.86 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=20.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-++.+.|-+|||||||++.|+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 466788999999999999999875
No 140
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=84.93 E-value=0.43 Score=52.14 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=22.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
...++|++.|.|||||||+++.|.+..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999876543
No 141
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.49 E-value=0.35 Score=49.54 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.8
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+++.+-|-|||||||||+.|....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999996654
No 142
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=84.46 E-value=1 Score=47.32 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=32.5
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccc-------hHHHHHHhhcCCceEEEec
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKY-------WQKVADERRRKPYSVMLAD 841 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrY-------WqkVa~eR~kkp~si~lAD 841 (1112)
|+|-|-||||||+|++.|.+..+ .|+-.+.+..+-++| ...+....++....|++.|
T Consensus 120 vLl~GppGtGKT~la~aia~~~~-----~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iD 183 (357)
T 3d8b_A 120 ILLFGPPGTGKTLIGKCIASQSG-----ATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFID 183 (357)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----CEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-----CeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34459999999999999977643 244444333333332 2223333333445677777
No 143
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=84.23 E-value=0.55 Score=49.80 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|.+|-+.|.||+|||||++.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 5678899999999999999999875
No 144
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=84.20 E-value=0.66 Score=49.55 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=20.4
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
-.|+.+-|-+||||||||+.|...
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 367888899999999999998554
No 145
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=84.18 E-value=0.38 Score=47.18 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|-++.+.|-+|||||||++.|...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 46778889999999999999998653
No 146
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.17 E-value=0.61 Score=47.63 Aligned_cols=23 Identities=43% Similarity=0.753 Sum_probs=18.6
Q ss_pred EEccCCCCchhhHHHHHHHhcCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pg 802 (1112)
|++-|-||||||+|++.|.+..+
T Consensus 52 vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT
T ss_pred EEEECCCCcCHHHHHHHHHHHhC
Confidence 44459999999999999987653
No 147
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=84.16 E-value=0.39 Score=44.88 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
++.+-|-|||||||+|+.|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 678889999999999999966543
No 148
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=83.99 E-value=0.46 Score=46.90 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=23.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+|.++-+-|-+|||||||++.|....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 678999999999999999999986644
No 149
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.74 E-value=1.5 Score=45.92 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=18.5
Q ss_pred cEEEEccCCCCchhhHHHHHHH
Q 046016 777 GLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~ 798 (1112)
|-++.+.|-+||||||+|.-|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 6666677999999999998873
No 150
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=83.72 E-value=0.49 Score=44.41 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+.-+.|.+.|-+|||||||++-+...
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34567889999999999999998653
No 151
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=83.60 E-value=0.5 Score=45.07 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.9
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-++.+-|-||||||+||+.|..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 566888889999999999999865
No 152
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=83.49 E-value=0.42 Score=44.60 Aligned_cols=27 Identities=30% Similarity=0.428 Sum_probs=23.7
Q ss_pred ccCCCcEEEEccCCCCchhhHHHHHHH
Q 046016 772 VQKDEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 772 v~k~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+-.+|..|-+.|-||||||||.+-|.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 455789999999999999999998874
No 153
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=83.49 E-value=0.46 Score=44.53 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.9
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-.+++-|-||||||+|++.|..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 677788899999999999988765
No 154
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.46 E-value=0.46 Score=46.70 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.-.++..-|-|||||||+++.+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 34678889999999999999997753
No 155
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=83.45 E-value=1.5 Score=39.68 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=19.8
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
.-|.+-|-+|||||+|++-++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 346677999999999999997654
No 156
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=83.39 E-value=0.44 Score=45.08 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=18.8
Q ss_pred EEEccCCCCchhhHHHHHHHhc
Q 046016 779 IVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~ 800 (1112)
++-+-|-+|||||||++.|...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5667899999999999998754
No 157
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.38 E-value=0.44 Score=42.78 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.0
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|++-|-||||||+|++.+.+.
T Consensus 46 vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 46 PILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEESCGGGCHHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999888664
No 158
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=83.31 E-value=0.48 Score=48.12 Aligned_cols=48 Identities=17% Similarity=0.107 Sum_probs=34.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCC-CCCCcceecccccccCccc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGG-LGDNRPIHTLMGDLTKGKY 822 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg-~g~~rpv~sLmGD~iKGrY 822 (1112)
-.|.-|.|.|-+|+|||+||.+++..--. ++||+++-...++.+-|+-
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~rG~~lvaDD~v~i~~~~~~l~g~~ 62 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENNQLIGSC 62 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHTTCEEEESSEEEEEESSSCEEEEC
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHcCCeEecCCEEEEEEeCCEEEEeC
Confidence 35677889999999999999999884222 4677666666666665543
No 159
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=83.24 E-value=2.5 Score=44.76 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=19.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|-++.|.|-+||||||++.-|.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456677777999999999988873
No 160
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=83.11 E-value=0.8 Score=54.67 Aligned_cols=60 Identities=20% Similarity=0.443 Sum_probs=37.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccc-------hHHHHHHhhcCCceEEEec
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKY-------WQKVADERRRKPYSVMLAD 841 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrY-------WqkVa~eR~kkp~si~lAD 841 (1112)
-.|+|+| |-||||||.|++.|-+..| . ++..+.|..+-++| +.++-++.++..-+|++.|
T Consensus 238 p~GILL~--GPPGTGKT~LAraiA~elg---~--~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfID 304 (806)
T 3cf2_A 238 PRGILLY--GPPGTGKTLIARAVANETG---A--FFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFID 304 (806)
T ss_dssp CCEEEEE--CCTTSCHHHHHHHHHTTTT---C--EEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEE
T ss_pred CCeEEEE--CCCCCCHHHHHHHHHHHhC---C--eEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3577766 8999999999999965433 2 55555554444444 4445454444444566654
No 161
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.04 E-value=0.57 Score=42.99 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=19.3
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
++++-|-||||||+|++.+.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56778999999999999987643
No 162
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=83.03 E-value=0.47 Score=47.74 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++.+-|-|||||||||+.|..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 5677888999999999999998743
No 163
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=82.59 E-value=0.57 Score=42.92 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=20.5
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+.....=|.+.|-+|||||+|++-+.+
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 335556678899999999999999854
No 164
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=82.59 E-value=0.55 Score=45.98 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=19.0
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
|++-|=||.||||||+|+.|.+..
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999885543
No 165
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.57 E-value=1.1 Score=44.59 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
-.++|-|-||||||+|++.|-+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 357788999999999999987643
No 166
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=82.46 E-value=1.3 Score=46.73 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=24.1
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccc
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKY 822 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrY 822 (1112)
-|+|-|-||||||+|++.|-+..+. |+-.+.+..+.++|
T Consensus 150 ~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTSKY 188 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC----
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhccc
Confidence 3566799999999999999776432 44444444444433
No 167
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=82.43 E-value=0.52 Score=46.29 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=18.3
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|+|-|-||||||+|++.|-+..
T Consensus 47 vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 4567999999999999987643
No 168
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=82.33 E-value=0.67 Score=48.99 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=23.0
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
-.+|-++-+-|-||||||||++-|..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 36788999999999999999999864
No 169
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=82.28 E-value=0.6 Score=46.62 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|-++.+-|-.|||||||+|.|...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 46888999999999999999998653
No 170
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=82.21 E-value=1.2 Score=44.30 Aligned_cols=22 Identities=23% Similarity=0.458 Sum_probs=19.0
Q ss_pred cEEEEccCCCCchhhHHHHHHH
Q 046016 777 GLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|.+|-|-||+|||++|..++
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999987743
No 171
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=82.12 E-value=2.6 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=18.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
+|-++.+.|-+||||||+|.-|.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLA 119 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 56666667999999999988873
No 172
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=82.04 E-value=0.63 Score=42.95 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|.-|-+.|-||||||+|.+-+...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 36778889999999999999998653
No 173
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=82.04 E-value=0.54 Score=51.19 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=22.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+|-++.+-|-||||||||++.|....+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4566777899999999999999976443
No 174
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.80 E-value=1 Score=49.00 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=26.8
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKY 822 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrY 822 (1112)
+.|-|-||||||+|++.|-+.. |.+.|+..+.|-.+-++|
T Consensus 66 iLl~GppGtGKT~la~ala~~l---~~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 66 VLLAGPPGTGKTALALAIAQEL---GSKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH---CTTSCEEEEEGGGGCCSS
T ss_pred EEEECCCcCCHHHHHHHHHHHh---CCCceEEEEeHHHHHHHh
Confidence 4456999999999999987764 333455555554444444
No 175
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=81.76 E-value=4.1 Score=40.64 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=23.1
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
...+-+=|.+.|-||+|||||.+-|+....
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCC
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345667788999999999999999976544
No 176
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.68 E-value=0.81 Score=51.85 Aligned_cols=42 Identities=21% Similarity=0.464 Sum_probs=29.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccch
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKYW 823 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrYW 823 (1112)
-.|+|+| |-||||||.|++.|-+.. |. |+-.+.|..+-++|-
T Consensus 243 prGILLy--GPPGTGKTlLAkAiA~e~---~~--~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 243 PKGILLY--GPPGTGKTLCARAVANRT---DA--TFIRVIGSELVQKYV 284 (467)
T ss_dssp CSEEEEC--SCTTSSHHHHHHHHHHHH---TC--EEEEEEGGGGCCCSS
T ss_pred CCceEee--CCCCCcHHHHHHHHHhcc---CC--CeEEEEhHHhhcccC
Confidence 4577755 999999999999985543 22 666666666666653
No 177
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=81.66 E-value=0.95 Score=43.27 Aligned_cols=27 Identities=22% Similarity=0.538 Sum_probs=24.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+|-++.+-|-.|||||||+|.|....
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 678899999999999999999997655
No 178
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=81.55 E-value=0.87 Score=42.07 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=22.4
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
....-+=|.+-|-+|||||+|++-+.+.
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcC
Confidence 3344566788999999999999998763
No 179
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=81.45 E-value=0.79 Score=42.60 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=21.5
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
....-+=|.+-|-||||||+|++-+.+.
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3445577889999999999999988753
No 180
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=80.99 E-value=0.78 Score=41.98 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+-+=|.+.|-+|||||+|++-+...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3456788899999999999999753
No 181
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=80.95 E-value=0.59 Score=45.81 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=18.9
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
|-++.+.|-+|||||||++-|..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHh
Confidence 34678899999999999888654
No 182
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=80.91 E-value=0.74 Score=40.28 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=18.7
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+.|-||||||+|++.+.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3467889999999999999875
No 183
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=80.70 E-value=1.8 Score=47.55 Aligned_cols=60 Identities=33% Similarity=0.509 Sum_probs=31.8
Q ss_pred EccCCCCchhhHHHHHHHhc------CCCCCCCcceecc-cccccCcc---chHHHHHHhhcCCceEEEec
Q 046016 781 FFPGIPGCAKSALCKELLNA------PGGLGDNRPIHTL-MGDLTKGK---YWQKVADERRRKPYSVMLAD 841 (1112)
Q Consensus 781 FFPgIPGcaKSaLCkei~~~------pgg~g~~rpv~sL-mGD~iKGr---YWqkVa~eR~kkp~si~lAD 841 (1112)
+|-|-||||||+|++.|-+. |..+.+. ++-.+ +|...+|. -...+.++-.+....|++.|
T Consensus 205 LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~-~~~~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD 274 (468)
T 3pxg_A 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDK-RVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (468)
T ss_dssp EEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSC-CEECC----------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHhCCCChhhcCC-eEEEeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe
Confidence 56799999999999887664 2222222 33332 33222221 12344454444556788889
No 184
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=80.70 E-value=2.1 Score=42.98 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++..-|-.|||||||.|-|
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l 51 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNII 51 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 57778889999999999999988
No 185
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=80.58 E-value=0.76 Score=43.08 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+-.+++-|-||||||+|++.|.+..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344567789999999999998876443
No 186
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=80.45 E-value=0.76 Score=40.52 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=18.3
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
=|.+-|-||||||+|++-+.+
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 466789999999999999876
No 187
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=80.01 E-value=1.1 Score=41.92 Aligned_cols=27 Identities=30% Similarity=0.209 Sum_probs=22.1
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+..-+=|.+.|-||||||+|++-+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 345557788999999999999988765
No 188
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=79.97 E-value=0.64 Score=42.79 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=20.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
...+=|.+-|-+|||||+|++-+.+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567788999999999999999854
No 189
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.91 E-value=0.59 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=18.9
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
++|-|-||||||+|++.|.+..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6778999999999999987753
No 190
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=79.75 E-value=1.7 Score=44.12 Aligned_cols=32 Identities=25% Similarity=0.104 Sum_probs=23.4
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCCCC
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGGLG 805 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g 805 (1112)
...|.|+++-|=||+|||+++-.++..-.+.|
T Consensus 9 ~~~G~i~litG~mGsGKTT~ll~~~~r~~~~g 40 (223)
T 2b8t_A 9 KKIGWIEFITGPMFAGKTAELIRRLHRLEYAD 40 (223)
T ss_dssp --CCEEEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred cCCcEEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 45789999999999999999777655433333
No 191
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=79.68 E-value=2.1 Score=44.44 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=24.9
Q ss_pred Ccccccccc--CCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 765 PRQAKDEVQ--KDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 765 p~~~~d~v~--k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.....|.+- =.+|=++.+-|-||||||+||..|..
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 344555432 13566788889999999999888753
No 192
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=79.58 E-value=0.74 Score=46.26 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=20.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+-.+++-|-||||||+|++.+.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3446677899999999999998763
No 193
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=79.13 E-value=0.91 Score=40.04 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=19.0
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+-|-||||||+|++-+.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4467889999999999999875
No 194
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=79.09 E-value=0.88 Score=47.81 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.1
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHH
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
+.+|-++.+.|-+|||||||++-|.
T Consensus 99 ~~~g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 99 EPKGRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp CCSSSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHH
Confidence 3567788888999999999988864
No 195
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=79.02 E-value=0.79 Score=39.89 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=18.1
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|.+-|-+|||||+|++-+...
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 667899999999999998754
No 196
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=78.82 E-value=0.81 Score=41.95 Aligned_cols=27 Identities=11% Similarity=0.170 Sum_probs=20.9
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
....+=|.+-|-||||||+|++-+.+.
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcC
Confidence 345577889999999999999998753
No 197
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=78.55 E-value=1 Score=42.95 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=19.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
+|-++.+-|-||+|||+||-.++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHH
Confidence 45578888999999999998864
No 198
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=78.35 E-value=0.97 Score=39.55 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.2
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|.+-|-||||||+|++-+...
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 567899999999999998753
No 199
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=78.07 E-value=1 Score=40.08 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.0
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|.+.|-||||||+|++-+...
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 567899999999999998643
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=77.95 E-value=1.3 Score=43.15 Aligned_cols=40 Identities=23% Similarity=0.188 Sum_probs=28.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDL 817 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~ 817 (1112)
....++++-|-+|+||||||..|..... .|. .|-++..|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~--~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNY--KVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTS--CEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCC--eEEEEeCCC
Confidence 3457889999999999999999876554 332 344444443
No 201
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=77.79 E-value=1 Score=40.28 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+-|-||||||+|++-+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 44678899999999999998753
No 202
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=77.71 E-value=1.1 Score=45.16 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=20.2
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
+-.+++-|-||||||+|++.|.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4456778999999999999987643
No 203
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=77.71 E-value=0.84 Score=40.72 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.9
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+-|-||||||+|++-+.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4567889999999999999854
No 204
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=77.69 E-value=0.87 Score=51.93 Aligned_cols=43 Identities=33% Similarity=0.576 Sum_probs=30.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
.+|-++++-|.+|||||||.+.|....+-- ..+.+..+-||.+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~-~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEM-GGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTT-CSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhccc-CCceEEEECCcHH
Confidence 478999999999999999999886543211 1124555667755
No 205
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=77.65 E-value=1.1 Score=50.19 Aligned_cols=26 Identities=31% Similarity=0.595 Sum_probs=21.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
+|-++.|-|=||||||+|++.|-...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46688899999999999999886543
No 206
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=77.46 E-value=1.5 Score=39.39 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
..-+=|.+-|-||+|||+|++.++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34456788999999999999999764
No 207
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=77.45 E-value=1 Score=47.85 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+|=++-+.|-+|||||||++-|+...
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 567788889999999999999987654
No 208
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=77.33 E-value=1.2 Score=40.85 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=20.8
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
-+=|.+-|-||||||+|++-+.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3567889999999999999987643
No 209
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=77.13 E-value=1.1 Score=39.44 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=17.8
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+-|-||||||+|++-+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 56779999999999999876
No 210
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=77.06 E-value=1.1 Score=39.40 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=18.1
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|.+-|-||||||+|++-+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 667899999999999998753
No 211
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=76.91 E-value=1 Score=48.94 Aligned_cols=22 Identities=45% Similarity=0.693 Sum_probs=19.3
Q ss_pred cEEEEccCCCCchhhHHHHHHH
Q 046016 777 GLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~ 798 (1112)
|-++.|.|.||||||||++-|.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHh
Confidence 3478889999999999999995
No 212
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=76.66 E-value=1.2 Score=39.89 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=18.9
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+-|-||||||+|++-+.+
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4577889999999999999865
No 213
>2hvq_A ORF1, hypothetical 37.6 kDa protein in GP24-HOC intergenic region; RNA, ligase, lysine adenylate; HET: APK; 2.40A {Enterobacteria phage T4} PDB: 2hvr_A* 2hvs_A*
Probab=76.59 E-value=25 Score=37.94 Aligned_cols=131 Identities=15% Similarity=0.208 Sum_probs=72.5
Q ss_pred ccCccCCcchHHHHHHHHHHH-HcCc--eeEEEEEeecceEEEeecCCCc--ccccccCC-----CcchhhHHHHHHHHH
Q 046016 205 YPKFENEKSDQEIRMRMIEVV-SNGL--AAVEVTLKHSGSLFMYAGHKGG--AYAKNSFG-----NVYTAVGVFVLGRML 274 (1112)
Q Consensus 205 yPKFENEksDqeiR~rMie~V-s~G~--~~lEVTLKHSGSLfmyaG~~Gg--ayaKNS~g-----N~~TAvGv~vL~r~~ 274 (1112)
||+.||--+ .+.|+.+ ..|+ +.+.||-|=-|+=+...-+.|+ +.++|.+= |.+-+. ++.++
T Consensus 6 Y~si~n~~~-----~~~i~~~~~~~l~~~~vvvtEKlDG~N~~i~~~~~~i~~~sR~~~l~~~~~~~~~~~---~~~~~- 76 (335)
T 2hvq_A 6 YSSLENHYN-----SKFIEKLYSLGLTGGEWVAREXIHGTNFSLIIERDKVTCAKRTGPILPAEDFFGYEI---ILKNY- 76 (335)
T ss_dssp CCCCEETTC-----HHHHHHHHHTTCSCSCEEEEECCSSEEEEEEEETTEEEEEETTEECCTTCCCTTTHH---HHHHH-
T ss_pred CCCCcchhh-----hhHHHHHHhhccCCCcEEEEEEecCcceEEEEECCEEEEecCCcccCCccccchHHH---HHHHH-
Confidence 899999663 4445555 2344 3778999988876655333232 33344421 111110 11111
Q ss_pred HHHhhhHHHHhHHHHHHHHhh---cceEEEeeehhh-hccCCC-CC-CCCCceEEeeee-ccCCCCCcccccHHHHHHHH
Q 046016 275 REAWGAQALKKQVEFNDFLEK---NRMCISMELVTA-VLGDHG-QR-PREDYAVVTAVT-ELGNGKPKFYSTPEIIAFCR 347 (1112)
Q Consensus 275 r~~wg~~a~~~Q~efndfle~---nRl~iSmElVTa-vLGdHG-qr-P~~dY~VvTAvt-eL~ngkP~FysT~e~i~fCr 347 (1112)
+.... .+.+.|.. .++-|-=|++-+ +. |+ .- |. +|.| =.|- ..++|.-+|++|.+..++|.
T Consensus 77 ----~~~i~----~L~~~l~~~~~~~~~i~GE~~G~~Iq--~~i~Y~~~-~Fyv-FDI~~~~~~~~~~~l~~~~~~~l~~ 144 (335)
T 2hvq_A 77 ----ADSIK----AVQDIMETSAVVSYQVFGEFAGPGIQ--KNVDYGDK-DFYV-FDIIVTTESGDVTYVDDYMMESFCN 144 (335)
T ss_dssp ----HHHHH----HHHTTHHHHTEEEEEEEEEEESBTTB--SSCCCCSS-EEEE-EEEEEEETTCCEEECCHHHHHHHHH
T ss_pred ----HHHHH----HHHHHhhccCCCcEEEEEEEccCccc--CCcccCCC-eEEE-EEEEEecCCCceeeCCHHHHHHHHH
Confidence 00111 11122322 688889999843 22 22 11 33 4444 4444 55566678999999999999
Q ss_pred hcCCCCCce
Q 046016 348 KWRLPTNHV 356 (1112)
Q Consensus 348 kwrLPtNhv 356 (1112)
+.+||+=.+
T Consensus 145 ~~gl~~VP~ 153 (335)
T 2hvq_A 145 TFKFKMAPL 153 (335)
T ss_dssp HHTCEESCE
T ss_pred HcCCCeece
Confidence 999997665
No 214
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=76.53 E-value=1 Score=39.77 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.2
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|.+-|-||||||+|++.+...
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 677899999999999998753
No 215
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=76.50 E-value=1.2 Score=39.80 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=19.9
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
-+=|.+-|-+|||||+|++-+.+.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 345778899999999999998753
No 216
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=76.48 E-value=1 Score=44.90 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||+|-|
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l 50 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYIL 50 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46778888999999999999988
No 217
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=76.48 E-value=1.3 Score=41.58 Aligned_cols=25 Identities=16% Similarity=0.173 Sum_probs=20.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+.-+=|.+-|-||||||+|++-+.+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhc
Confidence 4446678889999999999999864
No 218
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=76.29 E-value=1.2 Score=39.05 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=18.4
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|.+-|-+|+|||+|++-+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4567999999999999987643
No 219
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=76.22 E-value=1.1 Score=42.63 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=19.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|=++.+-|-||||||+||..+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455777789999999999887643
No 220
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=76.19 E-value=0.85 Score=40.40 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=16.9
Q ss_pred EEccCCCCchhhHHHHHHH
Q 046016 780 VFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~ 798 (1112)
|.+-|-||+|||+|++-+.
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 5678999999999999884
No 221
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=76.18 E-value=1.2 Score=39.25 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.2
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+-|-||||||+|++-+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 34677899999999999998764
No 222
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=76.13 E-value=1.2 Score=39.40 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=19.1
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+-|-||||||+|++-+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 34677899999999999998754
No 223
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=76.12 E-value=1.2 Score=39.14 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=18.3
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
=|.+-|-||||||+|++-+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 467789999999999999875
No 224
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=76.01 E-value=1.3 Score=41.47 Aligned_cols=28 Identities=14% Similarity=0.126 Sum_probs=21.7
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+...-+=|.+.|-||||||+|++-+.+.
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4455677889999999999999998763
No 225
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=75.82 E-value=1.5 Score=39.98 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.4
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+-|.+.|-+|||||+|++-+.+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5678899999999999999864
No 226
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=75.79 E-value=1.3 Score=44.08 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
-+|++-|.+|||||+|++++.+..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc
Confidence 366778999999999999998764
No 227
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=75.79 E-value=1.2 Score=39.56 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.1
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
=|.+.|-||||||+|++-+.+
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 467889999999999998864
No 228
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=75.65 E-value=1.3 Score=39.97 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=19.4
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+.|-||+|||+|++-+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 34678899999999999999753
No 229
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=75.64 E-value=1.6 Score=48.05 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=20.4
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+++-..+++-|.||||||+|++.|.+
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34445588899999999999987654
No 230
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=75.54 E-value=1.3 Score=40.65 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.3
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
-+-|.+.|-+|||||+|++-+.+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 356788999999999999998754
No 231
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=75.51 E-value=1.4 Score=46.20 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|-++.+.|-+|||||||++-|..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5788999999999999999998743
No 232
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=75.32 E-value=1.3 Score=46.02 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.|-++-+-|-+|||||||.+-|.
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 36688899999999999999996
No 233
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=75.21 E-value=1.6 Score=46.10 Aligned_cols=20 Identities=35% Similarity=0.268 Sum_probs=16.8
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
+++-|-+|+|||+|+|.|+.
T Consensus 38 ~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 38 WTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHH
Confidence 45669999999999999843
No 234
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=75.10 E-value=2.4 Score=44.08 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=19.9
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
-|.+.|-||+|||||++-++....
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~ 32 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKV 32 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCce
Confidence 366889999999999999986543
No 235
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=75.00 E-value=1.3 Score=40.05 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=21.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+-+=|.+-|-||||||+|++-+.+
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3446678899999999999999875
No 236
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=74.99 E-value=1.3 Score=39.65 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=19.7
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+-|-||||||+|++-+.+.
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45778899999999999998764
No 237
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=74.94 E-value=1.4 Score=42.92 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=19.1
Q ss_pred EEEccCCCCchhhHHHHHHHhc
Q 046016 779 IVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~ 800 (1112)
++.|-|.+|||||||++.|+..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5678899999999999998764
No 238
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=74.89 E-value=1.4 Score=39.30 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.3
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
-+=|.+.|-||||||+|++-+.+.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 455788899999999999998764
No 239
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=74.83 E-value=1.3 Score=41.62 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=18.2
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
-|++-|-||||||+|++.|.+.-
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 45566999999999998886643
No 240
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=74.75 E-value=1.3 Score=45.09 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=18.7
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
--+++-|-||||||+|++.|.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 34667799999999999988764
No 241
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=74.74 E-value=1.4 Score=39.70 Aligned_cols=22 Identities=14% Similarity=0.230 Sum_probs=19.2
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+-|-||||||+|++-+.+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4577889999999999999875
No 242
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=74.70 E-value=1.4 Score=44.68 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.3
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+++-|-||||||+|++.|.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 677889999999999999877543
No 243
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=74.70 E-value=1.3 Score=42.89 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=19.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.|.|+++-|.||||||+++-.+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 37899999999999999985544
No 244
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=74.51 E-value=1.2 Score=39.58 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+-|-+|||||+|++-+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4467779999999999999875
No 245
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=74.49 E-value=1.5 Score=45.32 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
..++-|.+.|.||+|||+|.+-|...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCceEEEEecCCCchHHHHHHHhcC
Confidence 34577888999999999999999743
No 246
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=74.48 E-value=1.6 Score=39.64 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=18.8
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
..|-+.|-||||||+|++-+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3567889999999999999864
No 247
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=74.41 E-value=1.2 Score=47.87 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=37.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCC-CCCCcceeccccc-ccCccchHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGG-LGDNRPIHTLMGD-LTKGKYWQKV 826 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg-~g~~rpv~sLmGD-~iKGrYWqkV 826 (1112)
.|.-|.|.|-+|+|||+|+.+++..--. ++||+..-...++ .+.|+-|.-.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~~~~l~g~~~~~l 195 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRAPKLI 195 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESSSSCEEEECCGGG
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcCCCeEEEcCchhh
Confidence 5777889999999999999999886222 3677666555565 5668766533
No 248
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=74.37 E-value=1.2 Score=41.05 Aligned_cols=20 Identities=25% Similarity=0.539 Sum_probs=17.5
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|.+.|-||||||+|++-+..
T Consensus 5 v~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 56789999999999999864
No 249
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=74.30 E-value=1.6 Score=40.28 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
..+=|.+-|-||||||+|++-+.+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHc
Confidence 456778899999999999999875
No 250
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=74.29 E-value=1.5 Score=44.90 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++.+-|-.|||||||.|-|..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 5777888999999999999999843
No 251
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=74.25 E-value=1.5 Score=46.12 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=21.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
...+|.+-|-||+|||||+..|....
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45677889999999999999886543
No 252
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=74.17 E-value=1.2 Score=44.58 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=20.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|=++.+-|-||||||+|++.|..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 455777889999999999998753
No 253
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=74.12 E-value=0.94 Score=46.12 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=31.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
+=+|+.+-|.|||||++..+.+.+..|. +.-.-+-|||.||
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~---~~~~vv~msD~iK 50 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGA---DVCAVLRLSGPLK 50 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCT---TTEEEECTHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCC---CCceEEEccHHHH
Confidence 4578999999999999999998875553 1222256999998
No 254
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=74.01 E-value=1.4 Score=44.73 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++..-|-.|||||||+|-|
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l 53 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVI 53 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHHHHH
Confidence 46778888999999999999998
No 255
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=73.91 E-value=1.8 Score=38.59 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.2
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
-+=|.+-|-+|||||+|++-+.+.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 355778899999999999998764
No 256
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=73.88 E-value=1.9 Score=38.59 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=20.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
...-|.+-|-||||||+|++-+.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345677889999999999999865
No 257
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=73.86 E-value=1.7 Score=40.64 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.3
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+-|.+-|-+|||||||++-+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45678899999999999998653
No 258
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=73.76 E-value=1 Score=53.05 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=20.0
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
|-.+.|-|-||||||+|++.|-+..
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHHh
Confidence 3345677999999999999987654
No 259
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=73.70 E-value=2.9 Score=46.90 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=18.3
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|++-|-||||||+|++.|-+..
T Consensus 52 vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4577999999999999987643
No 260
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=73.65 E-value=3.5 Score=47.51 Aligned_cols=61 Identities=30% Similarity=0.432 Sum_probs=32.4
Q ss_pred EEccCCCCchhhHHHHHHHhcC------CCCCCCcceecc-cccccCcc---chHHHHHHhhcCCceEEEec
Q 046016 780 VFFPGIPGCAKSALCKELLNAP------GGLGDNRPIHTL-MGDLTKGK---YWQKVADERRRKPYSVMLAD 841 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p------gg~g~~rpv~sL-mGD~iKGr---YWqkVa~eR~kkp~si~lAD 841 (1112)
|.|-|-||||||+|++.|-+.. ..+- +.++..+ +|...+|. -...+.++-.+..-.|++.|
T Consensus 204 vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~-~~~~~~~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD 274 (758)
T 3pxi_A 204 PVLIGEPGVGKTAIAEGLAQQIINNEVPEILR-DKRVMTLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID 274 (758)
T ss_dssp EEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS-SCCEECC----------CTTHHHHHHHHHTCCCCEEEEC
T ss_pred eEEECCCCCCHHHHHHHHHHHHhcCCCChhhc-CCeEEEecccccccchHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4678999999999999886642 2111 2233322 23333442 23344444444556788899
No 261
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=73.64 E-value=1.7 Score=43.61 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+.|-.|||||||.|-|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 678889999999999999999983
No 262
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.64 E-value=1.5 Score=44.18 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||.|-|
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l 52 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAI 52 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46778888999999999999998
No 263
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=73.60 E-value=1.5 Score=44.04 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++...|-.|||||||.|-|
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l 51 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSAL 51 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 57778899999999999999998
No 264
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=73.60 E-value=2.3 Score=47.97 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=24.9
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG 820 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG 820 (1112)
|++-|-||||||+|++.|-+..+ .|+-.+.|..+..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 66779999999999999876542 3554555444433
No 265
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=73.60 E-value=1.5 Score=38.81 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.6
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+-|.+-|-||||||+|++-+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35677889999999999999865
No 266
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=73.55 E-value=4.7 Score=44.12 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=41.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCccee---cccccccCccchHHHHHHhhcCCceEEEecCCC-CChhHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIH---TLMGDLTKGKYWQKVADERRRKPYSVMLADKNA-PNEEVW 850 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~---sLmGD~iKGrYWqkVa~eR~kkp~si~lADKNa-P~~~vW 850 (1112)
.+|=++-+-|-.|||||||.|-|.- +- +|-. .+.|.-+...=-.+....| +.+..+.=|-|. |.-.|+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~G----L~--~p~~G~I~i~G~~i~~~~~~~~~~~r--~~Ig~v~Q~~~l~~~~TV~ 123 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNL----LE--RPTEGSVLVDGQELTTLSESELTKAR--RQIGMIFQHFNLLSSRTVF 123 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHT----SS--CCSEEEEEETTEECSSCCHHHHHHHH--TTEEEECSSCCCCTTSCHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhc----CC--CCCceEEEECCEECCcCCHHHHHHHh--CcEEEEeCCCccCCCCCHH
Confidence 5677888899999999999998843 21 1221 2234333321112222333 446666666666 444666
Q ss_pred HHHH
Q 046016 851 RQIE 854 (1112)
Q Consensus 851 r~Ie 854 (1112)
+.|.
T Consensus 124 env~ 127 (366)
T 3tui_C 124 GNVA 127 (366)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 267
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=73.53 E-value=1.5 Score=39.25 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+-|-+|||||+|++-+.+.
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45778899999999999998753
No 268
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=73.52 E-value=1.4 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=19.2
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.++|-|-||||||+|++-|.+..
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 35678999999999999987654
No 269
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=73.50 E-value=1.5 Score=44.53 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+.|-.|||||||+|-|
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l 55 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLI 55 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46778889999999999999998
No 270
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=73.28 E-value=1.9 Score=44.21 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=22.4
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
-.+|=++.+.|-+|||||||.+-|+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHH
Confidence 36777899999999999999998765
No 271
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=73.27 E-value=1.8 Score=40.09 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=22.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
.+| +..+.|-.|||||+|.+.|.-..++
T Consensus 25 ~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 25 SKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp CSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 467 6778999999999999998665554
No 272
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=73.24 E-value=1.5 Score=41.13 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=21.4
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+.-+=|.+-|-+|||||+|++-+.+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHh
Confidence 34456678889999999999999864
No 273
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=73.18 E-value=1.9 Score=44.23 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=16.7
Q ss_pred ccCCCCchhhHHHHHHHhc
Q 046016 782 FPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 782 FPgIPGcaKSaLCkei~~~ 800 (1112)
|-|-||+|||+|++.+.+.
T Consensus 57 i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 57 SIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp CTTCCSSSHHHHHHHHHHH
T ss_pred CcCcCCCCHHHHHHHHHHH
Confidence 4899999999999998764
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=73.13 E-value=1.8 Score=45.61 Aligned_cols=25 Identities=20% Similarity=0.567 Sum_probs=21.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|-++.+.|-|||||||+|+-|..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 4677888999999999999988743
No 275
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=72.98 E-value=2.5 Score=49.81 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=19.4
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
|--|.+-|-||||||+|++.|.+..
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3345566999999999999996543
No 276
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=72.98 E-value=1.4 Score=47.19 Aligned_cols=30 Identities=7% Similarity=0.251 Sum_probs=24.0
Q ss_pred ccCCCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 772 VQKDEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 772 v~k~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
+....|--+|+-|-||||||++++.|.+..
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345566677889999999999999987644
No 277
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=72.97 E-value=1.4 Score=39.83 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.7
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+-|-||||||+|++-+.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 3467889999999999999874
No 278
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=72.94 E-value=2.1 Score=39.40 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=20.2
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
-+=|.+-|-||||||+|++-+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 356788899999999999998753
No 279
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=72.88 E-value=1.3 Score=40.92 Aligned_cols=25 Identities=12% Similarity=0.137 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+.=+=|.+-|-||||||+|++-+.+
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhc
Confidence 3445678899999999999999875
No 280
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=72.83 E-value=1.6 Score=44.52 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||.|-|
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l 52 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCI 52 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 57778888899999999999988
No 281
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=72.79 E-value=1.6 Score=39.17 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=18.8
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+-|-||||||+|++-+.+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4567889999999999988865
No 282
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=72.76 E-value=1.5 Score=40.74 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=20.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+.-+=|.+-|-+|+|||+|++-+.+
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4445678889999999999999854
No 283
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.75 E-value=1.7 Score=44.63 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||+|-|
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l 61 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRII 61 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 57778889999999999999998
No 284
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=72.73 E-value=1.6 Score=44.04 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++.+-|-.|||||||.|-|..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4677888999999999999999843
No 285
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=72.72 E-value=1.3 Score=43.94 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=19.5
Q ss_pred EEccCCCCchhhHHHHHHHhcCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pg 802 (1112)
++|-|-||||||+|++.+.+...
T Consensus 49 ~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 49 LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 67789999999999999877643
No 286
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=72.69 E-value=1.5 Score=45.29 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=19.3
Q ss_pred cEEEEccCCCCchhhHHHHHHH
Q 046016 777 GLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~ 798 (1112)
|-++.+.|-+|||||||.+-|.
T Consensus 169 geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHS
T ss_pred CCeEEEECCCCCcHHHHHHHhc
Confidence 4578889999999999999983
No 287
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=72.66 E-value=1.6 Score=44.47 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.3
Q ss_pred EEEccCCCCchhhHHHHHHHhc
Q 046016 779 IVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.|++-|-||||||+|++.|.+.
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6778899999999999998764
No 288
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=72.61 E-value=1.5 Score=43.59 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=19.8
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
+|++-|.+|||||+|++++.+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHhc
Confidence 66778999999999999987754
No 289
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=72.54 E-value=1.6 Score=43.52 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||.|-|
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l 54 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMI 54 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46778889999999999999998
No 290
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=72.50 E-value=1.6 Score=44.52 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=21.4
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
|-.++|-|-||||||+|++.|.+..+
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44677889999999999999977654
No 291
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=72.34 E-value=1.7 Score=41.50 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=21.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
..-+=|.+.|-||||||+|++-+.+.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34566788899999999999998763
No 292
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=72.33 E-value=2.9 Score=49.12 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.3
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
++|-|-||||||+|++.|.+.
T Consensus 194 vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 194 PVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 356799999999999887663
No 293
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.23 E-value=1.7 Score=46.23 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=20.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-++-+-|-||||||+||+.|.-
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 566788889999999999999764
No 294
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=72.20 E-value=1.7 Score=39.66 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.4
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+-|-||||||+|++-+.+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4578889999999999999875
No 295
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=72.15 E-value=1.7 Score=44.73 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||.|-|
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l 70 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCL 70 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHHHHH
Confidence 57778888999999999999988
No 296
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=72.14 E-value=1.7 Score=44.34 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+.|-.|||||||.|-|.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~ 67 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLY 67 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 577789999999999999999983
No 297
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=72.13 E-value=1.3 Score=43.96 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++.+-|-+|||||||.|-|.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 456678889999999999999884
No 298
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=72.08 E-value=1.7 Score=44.68 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=21.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||+|-|
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l 65 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALL 65 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 57778889999999999999998
No 299
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=71.87 E-value=1.6 Score=45.30 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+.|-.|||||||+|-|
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l 54 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNF 54 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 56778888999999999999998
No 300
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=71.81 E-value=2.4 Score=46.57 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
..|..+-+.|-||+|||||.+-|.....
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~ 45 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVL 45 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 5688999999999999999999987544
No 301
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=71.80 E-value=1.8 Score=39.65 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=21.6
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+..-.-|.+-|-||+|||+|++-+.+.
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344566778899999999999998753
No 302
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=71.66 E-value=6.7 Score=42.64 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.4
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
.|-+.|-||||||||.+-|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 577889999999999998765
No 303
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=71.62 E-value=1.8 Score=41.40 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+.-+=|.+.|-||||||+|++-+.+.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhC
Confidence 34466788999999999999998763
No 304
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=71.62 E-value=1.8 Score=45.43 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|.+|.+-|.||+|||||++-|..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 5678888899999999999998864
No 305
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=71.46 E-value=1.6 Score=39.39 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=19.0
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+-|-||||||+|++-+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4467889999999999999876
No 306
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=71.39 E-value=1.2 Score=43.16 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=18.7
Q ss_pred EEEccCCCCchhhHHHHHHHhc
Q 046016 779 IVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~ 800 (1112)
++.+.|-+|||||||++.|+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4678899999999999998663
No 307
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=71.37 E-value=1.8 Score=44.58 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+.|-.|||||||.|-|
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l 57 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLL 57 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 56778888999999999999998
No 308
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=71.16 E-value=1.8 Score=42.65 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=24.5
Q ss_pred CchhhhHHHHHHHhcCcEeeecccCCCCCCchhHHHHHHh
Q 046016 922 KSRKEFDGELVERFGSLIKMPLLKDDRSPLPDHVRSVLEE 961 (1112)
Q Consensus 922 k~r~ef~seL~~rF~~lVkmPllk~dr~~lP~~v~~~l~e 961 (1112)
.....|..+|+.||...|.+|-+. ..+...+|..
T Consensus 180 ~~~~~l~~~l~~R~~~~i~~~~~~------~~~~~~il~~ 213 (310)
T 1ofh_A 180 ARPSDLIPELQGRLPIRVELTALS------AADFERILTE 213 (310)
T ss_dssp SCGGGSCHHHHHTCCEEEECCCCC------HHHHHHHHHS
T ss_pred CCcccCCHHHHhhCCceEEcCCcC------HHHHHHHHHh
Confidence 345578899999999667777554 2577777775
No 309
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=71.06 E-value=2.2 Score=39.74 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=20.8
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
....-+=|.+-|-||||||+|++-+.+.
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3345577888999999999999998753
No 310
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=71.04 E-value=1.9 Score=38.68 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.5
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+-|-||||||+|++-+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45778899999999999998753
No 311
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=70.99 E-value=1.9 Score=40.72 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=19.8
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
..|.|-|-||+|||||++.+....
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456777999999999999987653
No 312
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=70.97 E-value=1.7 Score=39.39 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
+=|.+-|-||||||+|++-+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 457788999999999999987643
No 313
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=70.97 E-value=1 Score=46.70 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=25.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
.+.||-.-|-+||||||+|+.|.+..|..|- .+.++-.|-+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~--~~~vI~~D~~ 44 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGV--KAVSIEGDAF 44 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTC--CEEEEEGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCC--CeeEeecchh
Confidence 4567888899999999999999875554433 2444444443
No 314
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=70.90 E-value=1.6 Score=43.19 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEccCCCCchhhHHHHHHHh-cCCCCCC
Q 046016 780 VFFPGIPGCAKSALCKELLN-APGGLGD 806 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~-~pgg~g~ 806 (1112)
|.+-|-+|+||+|||+.|++ .|..++-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~ 31 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEE
Confidence 34679999999999999886 4666653
No 315
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=70.72 E-value=4.4 Score=36.97 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=17.8
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|++-|=||||||+|++.|-+.
T Consensus 30 vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 30 VFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp EEEEEETTCCHHHHHGGGCCT
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 556799999999999998554
No 316
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=70.62 E-value=1.9 Score=42.48 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
++|-|-||||||++++.+.+..
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 6778999999999999887754
No 317
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=70.62 E-value=2.4 Score=40.77 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=21.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
....-|.+.|-||||||+|++-+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456788899999999999999854
No 318
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=70.59 E-value=1.7 Score=43.48 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=18.0
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
-|-+.|-||||||||++.+..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 466789999999999999854
No 319
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=70.43 E-value=2.1 Score=48.98 Aligned_cols=170 Identities=18% Similarity=0.258 Sum_probs=78.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCc-cchHH-HHHHhhcCCceEEEecCCC-CChhHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKG-KYWQK-VADERRRKPYSVMLADKNA-PNEEVWR 851 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKG-rYWqk-Va~eR~kkp~si~lADKNa-P~~~vWr 851 (1112)
..|-++.+.|-+|||||||++-|....-- +..-|...-+|+.+. ...|- ....|+ .+.++.-+-+. |...+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~--~I~vV~Q~~~~~p~~tV~e 366 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRN--NIPVIAQHTGADSASVIFD 366 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHH--TCCEECCSTTCCHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhc--CceEEecccCcCHHHHHHH
Confidence 57888999999999999999887542110 011344444676652 12221 111222 34555544443 4445555
Q ss_pred HHHHHhccCCccccccccCCCCCCCCcC-chHHHHHHHHHHhhccCCCCCCCCCCCCchhHHHHHHHhhcCCchhhhH--
Q 046016 852 QIEDMCRRTRASAVPVVPDSGGTESNPF-SLDALAVFMFRVLERVNHPGNLDKNSPNAGYVLLMFYHLYEGKSRKEFD-- 928 (1112)
Q Consensus 852 ~IedmC~~t~A~~VPVvpdseGt~~~PF-SLd~LAvfm~RvL~R~nH~G~LDkssp~Ag~VllMFy~LY~~k~r~ef~-- 928 (1112)
.|.-..... .. =||=|..|...+=- -.+-|. =+.|+.+ .++...|..-+++ .+..+..+-.
T Consensus 367 ~l~~a~~~~-~D--vVLIDTaGrl~~~~~lm~EL~-kiv~iar------~l~~~~P~evLLv------LDattGq~al~~ 430 (503)
T 2yhs_A 367 AIQAAKARN-ID--VLIADTAGRLQNKSHLMEELK-KIVRVMK------KLDVEAPHEVMLT------IDASTGQNAVSQ 430 (503)
T ss_dssp HHHHHHHTT-CS--EEEECCCCSCCCHHHHHHHHH-HHHHHHH------TTCTTCSSEEEEE------EEGGGTHHHHHH
T ss_pred HHHHHHhcC-CC--EEEEeCCCccchhhhHHHHHH-HHHHHHH------HhccCCCCeeEEE------ecCcccHHHHHH
Confidence 555433222 11 12456666533210 011111 1233333 2333344221111 1112211211
Q ss_pred -HHHHHHhcCcEeeecccCCCCCCchhHHHHHHh-hhhh
Q 046016 929 -GELVERFGSLIKMPLLKDDRSPLPDHVRSVLEE-GISW 965 (1112)
Q Consensus 929 -seL~~rF~~lVkmPllk~dr~~lP~~v~~~l~e-Gl~l 965 (1112)
..+.+.+ .+-.+=|.|=|++.--+.+.+++.+ |+-+
T Consensus 431 ak~f~~~~-~itgvIlTKLD~takgG~~lsi~~~~~~PI 468 (503)
T 2yhs_A 431 AKLFHEAV-GLTGITLTKLDGTAKGGVIFSVADQFGIPI 468 (503)
T ss_dssp HHHHHHHT-CCSEEEEECGGGCSCCTHHHHHHHHHCCCE
T ss_pred HHHHHhhc-CCCEEEEEcCCCcccccHHHHHHHHHCCCE
Confidence 2222222 2334556677777778888888764 5544
No 320
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=70.33 E-value=2 Score=39.04 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+-|-||||||+|++-+.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 55788899999999999998764
No 321
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=70.31 E-value=2.3 Score=43.81 Aligned_cols=27 Identities=33% Similarity=0.332 Sum_probs=23.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
-.|..|.|.|-+|+|||+|+.+|.+.-
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 356778899999999999999997763
No 322
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=70.28 E-value=2 Score=40.43 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+.-+=|.+.|-||||||+|++-+.+.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 34466888999999999999998653
No 323
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=70.27 E-value=1.8 Score=46.56 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.7
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.++++-|.||||||+|++.|.+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4788899999999999999987665
No 324
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=70.26 E-value=2 Score=38.57 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=18.4
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+-|-||||||+|++-+.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3466789999999999998875
No 325
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=70.25 E-value=2 Score=39.67 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=21.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
...+=|.+.|-||+|||+|++-+.+.
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 44567889999999999999998764
No 326
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=70.21 E-value=2.4 Score=38.86 Aligned_cols=25 Identities=12% Similarity=0.201 Sum_probs=21.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
..-+-|.+-|-||||||+|++.+.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456788899999999999999874
No 327
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.06 E-value=2 Score=49.56 Aligned_cols=57 Identities=33% Similarity=0.508 Sum_probs=34.4
Q ss_pred EEEccCCCCchhhHHHHHHHhcCCCCCCCccee-ccccccc------CccchHHHHHHhhcCCceEEEec
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPGGLGDNRPIH-TLMGDLT------KGKYWQKVADERRRKPYSVMLAD 841 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~-sLmGD~i------KGrYWqkVa~eR~kkp~si~lAD 841 (1112)
-++|-|-||||||.|++.|-+...+ .+.|+- +=|++.. .|.+-. .-+++|.+|++.|
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~--~~~~~i~i~~s~~~~~~~~~~~~l~~----~~~~~~~~vl~lD 586 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFG--DEESMIRIDMSEYMEKHSTSGGQLTE----KVRRKPYSVVLLD 586 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHS--CTTCEEEEEGGGGCSSCCCC---CHH----HHHHCSSSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC--CCcceEEEechhcccccccccchhhH----HHHhCCCeEEEEe
Confidence 4778899999999999998776532 222433 3344433 233332 2234577788887
No 328
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=69.86 E-value=1.7 Score=39.41 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=17.8
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|.+-|-||+|||+|++-+.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 567799999999999998753
No 329
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=69.69 E-value=1 Score=47.77 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred cEEEEccCCCCchhhHHHHHHH
Q 046016 777 GLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~ 798 (1112)
|-++.|.|.||||||||.+-|.
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~ 194 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAIS 194 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHhc
Confidence 5588999999999999999983
No 330
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=69.68 E-value=3.6 Score=41.61 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=19.6
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
+++|=|-||||||+|++.|.+..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh
Confidence 46778899999999999987765
No 331
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=69.63 E-value=1.7 Score=43.49 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||.|-|
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l 55 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTI 55 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 46667788899999999999998
No 332
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=69.63 E-value=2.1 Score=39.68 Aligned_cols=23 Identities=9% Similarity=0.184 Sum_probs=19.2
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+.|-||||||+|++-+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34678899999999999998653
No 333
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=69.49 E-value=1.9 Score=39.26 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=21.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
..+-|.+-|-||||||+|++-+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44667888999999999999986543
No 334
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=69.46 E-value=2.3 Score=46.13 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|-++.+.|-+|||||||++-|..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 5788999999999999999988744
No 335
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=69.29 E-value=2.4 Score=46.12 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=24.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
.+.++++-|-+|||||+|+.+|.+..+|
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCC
Confidence 4568899999999999999999876653
No 336
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=69.25 E-value=2.2 Score=43.64 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||.|-|
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i 53 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIV 53 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 57778888999999999999998
No 337
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=69.24 E-value=2.1 Score=44.41 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||.|-|
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l 67 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNIL 67 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 46778888899999999999988
No 338
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=69.08 E-value=2.2 Score=39.55 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=20.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.-+=|.+-|-||||||+|++-+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456778899999999999998763
No 339
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=68.86 E-value=2 Score=39.51 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.1
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+-|-||+|||+|++-+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34667899999999999998763
No 340
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=68.73 E-value=2.6 Score=38.98 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=20.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
...+=|.+.|-+|||||+|++-+.+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4456678889999999999999865
No 341
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=68.54 E-value=3.5 Score=45.45 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=19.5
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
-|+|-|-||||||+|++.|-+.-
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 35677999999999999998764
No 342
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=68.34 E-value=1.9 Score=47.20 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=19.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
+|=++-+-|-||||||+||+.|.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 45578888999999999999763
No 343
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=68.31 E-value=2.3 Score=39.09 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.0
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
-+=|.+-|-||+|||+|++-+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 355778899999999999998753
No 344
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=68.24 E-value=4.5 Score=45.11 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=27.9
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTK 819 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iK 819 (1112)
++-++.|.|-||+||||+|.-|......-| ..|-..-.|+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCccc
Confidence 567788889999999999887754322222 245555566554
No 345
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=68.16 E-value=2.3 Score=43.43 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||.|-|
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l 46 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARM 46 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 46778888999999999999988
No 346
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=68.10 E-value=2.1 Score=43.56 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=19.1
Q ss_pred EEccCCCCchhhHHHHHHHhcCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pg 802 (1112)
|+|-|-||||||+|++.|-+..+
T Consensus 49 vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 49 ILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp EEEESCCCHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 56679999999999999877543
No 347
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=67.91 E-value=2.8 Score=38.83 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=20.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
...+=|.+.|-||||||+|++-+..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4456788999999999999999875
No 348
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=67.66 E-value=9.7 Score=34.70 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.2
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|++-|=||||||+|++.|-+.-
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6788999999999999997754
No 349
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=67.61 E-value=2.4 Score=43.18 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||.|-|
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l 51 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLL 51 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHH
Confidence 46778888999999999999998
No 350
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=67.59 E-value=2.5 Score=39.85 Aligned_cols=26 Identities=31% Similarity=0.340 Sum_probs=20.5
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
++.-+-|.+.|-||||||+|++-+.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 34456788999999999999998853
No 351
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=67.57 E-value=3 Score=38.11 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=20.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
..+=|.+.|-||+|||+|++-+..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 345678889999999999999876
No 352
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=67.48 E-value=2.5 Score=40.09 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
..|.+.|-||+|||+|++.+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 45566699999999999988764
No 353
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=66.90 E-value=1.8 Score=40.70 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=21.4
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+..-.-|.+.|-+|||||+|++-|+..
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 344556777899999999999999654
No 354
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=66.78 E-value=3.2 Score=38.32 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=21.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.-+-|.+-|-||+|||+|++-+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34567889999999999999987643
No 355
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=66.76 E-value=2.6 Score=42.68 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=17.9
Q ss_pred EEEEccCCCCchhhHHHHHHH
Q 046016 778 LIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~ 798 (1112)
=++.+-|-+|||||||.|-|.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 366778999999999999983
No 356
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=66.40 E-value=2.7 Score=45.31 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=21.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.|+.+.|=||-||||||+++.|.+...
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 478899999999999999999865443
No 357
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=66.21 E-value=2.7 Score=39.42 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=19.5
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
-+-|.+.|-||||||+|++-+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345778899999999999998753
No 358
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=66.12 E-value=2.4 Score=39.63 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
.-|.+.|-||||||+|++-+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3567889999999999999875
No 359
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=66.10 E-value=2.8 Score=44.05 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=20.2
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
....|.+.|.||+|||||++-+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~ 189 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTT 189 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345678899999999999999854
No 360
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=66.09 E-value=2.4 Score=39.27 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=20.2
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
-+=|.+-|-||||||+|++-+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 355788899999999999998754
No 361
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=65.90 E-value=2.7 Score=39.47 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=21.2
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.-.-|.+-|-||+|||+|++-+.+..
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34557788999999999999987644
No 362
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=65.81 E-value=2.4 Score=39.68 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.1
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
-+=|.+-|-||||||+|++-+.+.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 355788899999999999998763
No 363
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=65.76 E-value=1.6 Score=39.44 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
...+-|.+-|-||||||+|++-+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 345678888999999999998885
No 364
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=65.73 E-value=3.1 Score=45.91 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=22.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
..|+.|+|=||-||||||+++.|.+....
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~ 75 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSR 75 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47899999999999999999999765443
No 365
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=65.49 E-value=2.8 Score=43.76 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=19.6
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
-++|-|-||||||+|++.|-+..
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35677999999999999987765
No 366
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=65.47 E-value=1.9 Score=39.08 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=9.7
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
-+=|.+-|-||||||+|++-+.+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35578889999999999988753
No 367
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=65.42 E-value=3.1 Score=43.71 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=20.0
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
|-.+-+.|-+|||||||++-|..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 66778889999999999998854
No 368
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=65.40 E-value=2.4 Score=44.86 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=+|-+.|-.|||||||.|-|.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCchHHHHHHHHH
Confidence 577788899999999999999984
No 369
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=64.89 E-value=3.3 Score=42.79 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.4
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+-.|-+.|-||||||||++-|+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 346788999999999999999754
No 370
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=64.89 E-value=3.5 Score=40.10 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=21.5
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+...-+-|-+.|-||+|||+|++-|+..
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCC
Confidence 3345567889999999999999999753
No 371
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=64.85 E-value=2.9 Score=42.42 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=23.9
Q ss_pred EEccCCCCchhhHHHHHHHhcCCCCCCCcceeccccccc
Q 046016 780 VFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLT 818 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~i 818 (1112)
|++-|-||||||+|++.|-+..+ .|+..+.+..+
T Consensus 58 vll~G~~GtGKT~la~~ia~~~~-----~~~~~~~~~~~ 91 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLANIISYEMS-----ANIKTTAAPMI 91 (338)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT-----CCEEEEEGGGC
T ss_pred EEEECcCCCCHHHHHHHHHHHhC-----CCeEEecchhc
Confidence 56779999999999999966532 24444444444
No 372
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=64.82 E-value=2.6 Score=39.61 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=19.0
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+-|-||||||+|++-+.+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 4577889999999999999876
No 373
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=64.81 E-value=2.9 Score=45.38 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=19.9
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-|+.+-|-||||||+||..+..
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 355777789999999999998765
No 374
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=64.78 E-value=2.6 Score=40.14 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=19.6
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
-+=|.+.|-||||||+|++-+.+
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35578889999999999999864
No 375
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=64.75 E-value=2.9 Score=43.49 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=18.7
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|.|-|=||||||+|++.|-+..
T Consensus 54 vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 54 ILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 4567999999999999997765
No 376
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=64.70 E-value=2.6 Score=42.68 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=17.1
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
|-+.|-||||||+|++.+..
T Consensus 4 I~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 4 ALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHC
Confidence 45679999999999999854
No 377
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=64.60 E-value=6.8 Score=44.92 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=17.6
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
++|-|=||||||+|++.|.+.
T Consensus 210 vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 210 PLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999999887653
No 378
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=64.60 E-value=2.7 Score=39.15 Aligned_cols=27 Identities=15% Similarity=0.241 Sum_probs=19.4
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+...-+=|.+.|-+|||||+|++-+.+
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHh
Confidence 445556678889999999999987654
No 379
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=64.50 E-value=2.5 Score=43.24 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.9
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
.-+.+.|.||+|||+|.+-|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~ 121 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKG 121 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred hheEEeCCCCCCHHHHHHHHhc
Confidence 4577889999999999999863
No 380
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=64.48 E-value=2.3 Score=47.32 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+|=+|-.-|-.|||||||||-|...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 6777788899999999999998664
No 381
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=64.21 E-value=1.9 Score=40.83 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=19.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
..-+=|.+-|-||||||+|++-++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBH
T ss_pred ccceEEEEECCCCCCHHHHHHHHH
Confidence 344667889999999999998854
No 382
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=64.17 E-value=3.1 Score=45.75 Aligned_cols=24 Identities=42% Similarity=0.713 Sum_probs=21.0
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||.|-|.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~ia 50 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIA 50 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHHHHHH
Confidence 567788889999999999999983
No 383
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=63.92 E-value=1.9 Score=45.26 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=24.4
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
.=.+| ++.+.|-+|||||+|.+-|.-.-++
T Consensus 57 ~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34789 9999999999999999887554544
No 384
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=63.91 E-value=3.1 Score=39.81 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.2
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+.|-||||||+|++-+.+
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4577889999999999999875
No 385
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=63.87 E-value=2.8 Score=39.63 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=20.2
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+.+.+=|.+.|-||||||+|++-+.+
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHh
Confidence 35567788999999999999988764
No 386
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=63.80 E-value=3.1 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+.++-+.|-+|||||||.+-|..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 455788899999999999999865
No 387
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=63.69 E-value=5 Score=39.38 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=20.6
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
-+-|.+.|-||+|||+|++-|+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3557788999999999999997644
No 388
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=63.64 E-value=3.1 Score=45.08 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||.|-|.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHH
Confidence 567778888999999999999983
No 389
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=63.57 E-value=2.4 Score=45.14 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=21.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+|-++.+.|-+|||||||++-|+..
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 35667788899999999999998653
No 390
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=63.56 E-value=2.9 Score=45.12 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||.|-|.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~ia 47 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIA 47 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHHHHHH
Confidence 567678888999999999999983
No 391
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=63.55 E-value=2.9 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++.+-|-.|||||||.|-|
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l 84 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMI 84 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHH
Confidence 57778888999999999999998
No 392
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=63.53 E-value=1.8 Score=40.68 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=18.9
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
-+=|.+-|-||||||+|++-+.+
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35567889999999999988753
No 393
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=63.41 E-value=3.7 Score=44.08 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|-++.+.|-+|||||||.+-|+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh
Confidence 5677888999999999999998865
No 394
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=63.33 E-value=2.6 Score=42.54 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=19.6
Q ss_pred EEccCCCCchhhHHHHHHHhcCC
Q 046016 780 VFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~pg 802 (1112)
|+|-|-||||||+|++.|-+..+
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 66779999999999999987654
No 395
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=63.22 E-value=3.6 Score=41.28 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=20.0
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
-|-+.|-||+|||+|.+-|+....
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 466789999999999999986544
No 396
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=63.16 E-value=4.1 Score=44.08 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=20.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
..+-|-+.|-||||||||.+-|+..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCceEEEECCCCCCHHHHHHHHhCC
Confidence 3466788999999999999998643
No 397
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=63.14 E-value=3.3 Score=38.76 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
...+=|.+-|-||||||+|++-+.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 455778899999999999999984
No 398
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=63.13 E-value=3.2 Score=45.08 Aligned_cols=31 Identities=16% Similarity=0.092 Sum_probs=26.0
Q ss_pred CCcEEEEccCCCCchhhHHH-HHHHhcCCCCC
Q 046016 775 DEGLIVFFPGIPGCAKSALC-KELLNAPGGLG 805 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLC-kei~~~pgg~g 805 (1112)
-.|+.|+|=|+=||||||++ +.|.+..+.-|
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g 41 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITPN 41 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence 35899999999999999999 99977655544
No 399
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=63.06 E-value=3.1 Score=46.47 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=28.2
Q ss_pred cccCccccCCCCchhHHHHHHHHHHHhhcC-Chhhhhhc--ccchHHHHHHHHHHHH
Q 046016 971 SKHGRLESTKGSYAQEWAKWEKQMRETLFG-NADYLQSI--QVPFESAVKQVLEQLK 1024 (1112)
Q Consensus 971 ~~~gr~E~tkgsy~~ew~~WEkrlRe~Ll~-~~~~L~si--Qvpfe~~Vk~vleql~ 1024 (1112)
-.-|.+|-.++..-+= ..||++|++ |-..|-.. .+=+|..+..-|..+.
T Consensus 256 ypWG~~even~~h~DF-----~~Lr~~l~~t~~~dL~~~T~~~~YE~yR~~~L~~~~ 307 (427)
T 2qag_B 256 YPWGTVQVENEAHCDF-----VKLREMLIRVNMEDLREQTHTRHYELYRRCKLEEMG 307 (427)
T ss_dssp -CCCCCC-----CCSS-----HHHHHHHHHTSTTHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred CCCceEEeCCCccccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3456667666655432 379999874 45666433 4678888887777653
No 400
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=63.00 E-value=6.1 Score=41.31 Aligned_cols=25 Identities=12% Similarity=0.282 Sum_probs=20.8
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
...+-|.+.|-||+|||+|++-+.+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~ 187 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKL 187 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCS
T ss_pred cCcceEEEECCCCccHHHHHHHHhC
Confidence 4556788899999999999998843
No 401
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=62.95 E-value=4.6 Score=45.18 Aligned_cols=22 Identities=23% Similarity=0.549 Sum_probs=18.0
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|+|-|-||||||+|++.|-+.-
T Consensus 241 vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 4445999999999999997654
No 402
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=62.89 E-value=3 Score=38.31 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=19.7
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+-|-+|||||+|++-+.+.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45778899999999999998764
No 403
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=62.83 E-value=3.4 Score=41.98 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=18.0
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
-|-+.|-||||||+|++.+..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 456779999999999999964
No 404
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=62.78 E-value=4.7 Score=41.67 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=18.2
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|-+.|-||||||||++-|+...
T Consensus 13 v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 4467999999999999997644
No 405
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.76 E-value=2.8 Score=46.42 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=19.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+-|-|||||||||+.+
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Confidence 36778888899999999999985
No 406
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=62.72 E-value=3.3 Score=49.56 Aligned_cols=60 Identities=25% Similarity=0.518 Sum_probs=36.3
Q ss_pred CCCcEEEEccCCCCchhhHHHHHHHhcCCCCCCCcceecccccccCccc-------hHHHHHH-hhcCCceEEEec
Q 046016 774 KDEGLIVFFPGIPGCAKSALCKELLNAPGGLGDNRPIHTLMGDLTKGKY-------WQKVADE-RRRKPYSVMLAD 841 (1112)
Q Consensus 774 k~~GlivFFPgIPGcaKSaLCkei~~~pgg~g~~rpv~sLmGD~iKGrY-------WqkVa~e-R~kkp~si~lAD 841 (1112)
...|+|+| |-||||||.|+|.|-+..+. |+-++.|..+-++| -.++-++ |+..| +|++.|
T Consensus 510 ~~~gvLl~--GPPGtGKT~lAkaiA~e~~~-----~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P-~IifiD 577 (806)
T 3cf2_A 510 PSKGVLFY--GPPGCGKTLLAKAIANECQA-----NFISIKGPELLTMWFGESEANVREIFDKARQAAP-CVLFFD 577 (806)
T ss_dssp CCSCCEEE--SSTTSSHHHHHHHHHHTTTC-----EEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCS-EEEECS
T ss_pred CCceEEEe--cCCCCCchHHHHHHHHHhCC-----ceEEeccchhhccccchHHHHHHHHHHHHHHcCC-ceeech
Confidence 34577655 77999999999999765532 44444444444444 3344444 44455 566655
No 407
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=62.36 E-value=4.1 Score=42.96 Aligned_cols=24 Identities=21% Similarity=-0.025 Sum_probs=20.5
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-|+.+-|-||||||+||..+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 566888889999999999998754
No 408
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=62.33 E-value=2.4 Score=45.69 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=31.6
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCC-CCCCcceecccccccCccch
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGG-LGDNRPIHTLMGDLTKGKYW 823 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg-~g~~rpv~sLmGD~iKGrYW 823 (1112)
.|.-|.|.|-+|+|||+|+-+++..--. ++||++.-...++.+-|+=|
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~G~~lv~DD~v~i~~~~~~l~g~~p 194 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIYRLGNRLFGRAQ 194 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTTTCEEEEEEEEEEEEETTEEEEEEC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcCCEEEeCCEEEEEEeCCeEEEeCc
Confidence 5777889999999999999998773211 34555444444433445433
No 409
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=62.18 E-value=3.5 Score=44.75 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||.|-|.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCchHHHHHHHHh
Confidence 567778888999999999999883
No 410
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=61.92 E-value=2 Score=39.45 Aligned_cols=24 Identities=25% Similarity=0.086 Sum_probs=5.6
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
..+=|.+-|-||||||+|++-+..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~ 42 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTS 42 (208)
T ss_dssp EEEEEEEC----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 346678899999999999988854
No 411
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=61.57 E-value=3.3 Score=43.22 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=19.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-++.|.|-+||||||++.-|..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455777789999999999888743
No 412
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=61.41 E-value=2.7 Score=38.86 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=20.1
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
...-|.+.|-||||||+|++-+.+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 346678899999999999999853
No 413
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=61.30 E-value=10 Score=43.54 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.8
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
-++|-|-||||||.|++.|-+..
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 46788999999999999987765
No 414
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=61.24 E-value=4 Score=40.10 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=19.1
Q ss_pred EEEccCCCCchhhHHHHHHHhc
Q 046016 779 IVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~ 800 (1112)
++.|-|-+|+|||||+..|+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5778899999999999988764
No 415
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=61.18 E-value=4.3 Score=44.06 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.8
Q ss_pred EEEEccCCCCchhhHHHHHHHhcCC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.+|..-|-+|||||+|++.|.+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4788899999999999999987655
No 416
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=61.14 E-value=3.7 Score=41.54 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=18.7
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+-|.+.|-||||||+|++.+..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4467889999999999999864
No 417
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=61.10 E-value=10 Score=42.48 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=20.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
++.++.|.|.||+||||+|.-|..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 467888899999999999888754
No 418
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.99 E-value=3.6 Score=42.30 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.1
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
++|-|-||||||+|++.|.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999987664
No 419
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=60.91 E-value=4.2 Score=41.76 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.0
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
.-|.+.|-||||||+|.+.+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g 25 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITG 25 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4577889999999999999864
No 420
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=60.77 E-value=3.6 Score=44.66 Aligned_cols=24 Identities=21% Similarity=0.530 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||.|-|.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~ia 50 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIA 50 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHH
Confidence 466677888999999999999984
No 421
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=60.48 E-value=4.1 Score=44.04 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.|+.+.|=||-||||||+++.|.+..+
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 478999999999999999999866544
No 422
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=60.47 E-value=3.6 Score=44.23 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=18.6
Q ss_pred EEccCCCCchhhHHHHHHHhc
Q 046016 780 VFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~ 800 (1112)
|-+.|.||||||||.+-|...
T Consensus 182 V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 778999999999999998653
No 423
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=60.46 E-value=4.1 Score=41.31 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
.++|-|-||||||+|++.+.+...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999876543
No 424
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=60.42 E-value=3.7 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||.|-|.
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~ia 62 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIA 62 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh
Confidence 467677888999999999999884
No 425
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=60.32 E-value=3.5 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.2
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|=++.+-|-||||||+||+.|..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 466777889999999999998754
No 426
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=60.16 E-value=4.5 Score=43.58 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=20.9
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+..| ++.+-|-+|||||||.+-|+.
T Consensus 120 ~~~~g-~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 120 DVPRG-LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HCSSE-EEEEECSTTSCHHHHHHHHHH
T ss_pred hCCCC-EEEEECCCCCCHHHHHHHHHh
Confidence 34455 888899999999999887754
No 427
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=60.15 E-value=3.9 Score=42.02 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=17.6
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+-+.|-+|||||||.+-|..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 456779999999999998865
No 428
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=59.98 E-value=4 Score=44.43 Aligned_cols=24 Identities=21% Similarity=0.520 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||.|-|.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHH
Confidence 567777888999999999999883
No 429
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=59.97 E-value=3.6 Score=44.84 Aligned_cols=24 Identities=42% Similarity=0.754 Sum_probs=20.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||.+-|.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~ia 51 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLA 51 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHHHHHh
Confidence 567788889999999999999883
No 430
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=59.67 E-value=7.8 Score=42.69 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=24.4
Q ss_pred Ccccccccc--CCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 765 PRQAKDEVQ--KDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 765 p~~~~d~v~--k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.....|.+- =.+|=++.+-|-||+|||+||-.|..
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 344555332 13566888899999999999877643
No 431
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.53 E-value=4 Score=40.29 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=18.8
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
++|-|-||+|||+|++.+.+..
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6778999999999999887653
No 432
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=59.51 E-value=3.8 Score=44.87 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||.+-|.
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~ia 68 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFL 68 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCEEEEECCCCChHHHHHHHHh
Confidence 577788899999999999999884
No 433
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=59.49 E-value=18 Score=39.16 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.2
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
.|-+.|-||+|||||.+-|..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEE
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 467889999999999998755
No 434
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=59.33 E-value=3.6 Score=43.94 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=19.2
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-++.+-|-||||||+||..+..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~ 83 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVA 83 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455667779999999999988753
No 435
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=59.32 E-value=3.1 Score=44.77 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||.|-|.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~ia 52 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIA 52 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHh
Confidence 567778888999999999999883
No 436
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=59.29 E-value=4.2 Score=44.26 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=20.0
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|=++.+-|-||+|||+||..|..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 566778889999999999988754
No 437
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.15 E-value=3.7 Score=41.73 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=17.8
Q ss_pred EEccCCCCchhhHHHHHHHh
Q 046016 780 VFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~ 799 (1112)
++|-|-||||||+|++.|.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67889999999999988866
No 438
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=59.06 E-value=6.2 Score=38.84 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.0
Q ss_pred EEEccCCCCchhhHHHHHHHhcCC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
-|+|-|=||||||+|++.|-+.-.
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTST
T ss_pred CEEEECCCCCcHHHHHHHHHHhcC
Confidence 356789999999999999987644
No 439
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=58.98 E-value=4 Score=42.10 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.6
Q ss_pred cEEEEccCCCCchhhHHHHHH
Q 046016 777 GLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei 797 (1112)
|=++..-|-.|||||||.|-|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l 50 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAI 50 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 778888999999999999998
No 440
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=58.92 E-value=4 Score=44.51 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=19.1
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
--+||-|-||||||+|++.|.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34678899999999999988664
No 441
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=58.90 E-value=4.3 Score=38.14 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=18.5
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+.|-||+|||+|++-+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3467889999999999988864
No 442
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=58.54 E-value=3.9 Score=42.52 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=19.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-++.+-|-||||||+||..+..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH
Confidence 355777889999999999998754
No 443
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=58.26 E-value=3.4 Score=41.34 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|+|-|-||||||+|++.|.+..
T Consensus 41 vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CEEECCTTCCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5667999999999999997654
No 444
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=58.16 E-value=4 Score=37.98 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=19.4
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+.|-||+|||+|++-+.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45778899999999999998753
No 445
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=58.09 E-value=4.6 Score=41.40 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.1
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-++.+-|-||||||+||..+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 466788889999999999988753
No 446
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=57.96 E-value=4.6 Score=44.10 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.8
Q ss_pred EEEccCCCCchhhHHHHHHHhc
Q 046016 779 IVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~ 800 (1112)
++.+-|-||||||+||..+...
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4567899999999999998765
No 447
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=57.94 E-value=3 Score=38.14 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=19.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHH
Q 046016 776 EGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
+-+=|.+.|-||||||+|++-+.
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 34667889999999999999884
No 448
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=57.76 E-value=2.9 Score=39.38 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.6
Q ss_pred EEEccCCCCchhhHHHHHHHh
Q 046016 779 IVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~ 799 (1112)
-|.+.|-||||||+|++-+.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999998843
No 449
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=62.08 E-value=2.2 Score=39.81 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=19.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
...+=|.+-|-||||||+|++-+.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~ 51 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYT 51 (204)
Confidence 455668889999999999997774
No 450
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=57.14 E-value=3.5 Score=42.67 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=21.3
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
||..++ .|-|-||+|||++|..|.+...|
T Consensus 56 Pkkn~i--li~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 56 PKKNCL--VFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp TTCSEE--EEESCGGGCHHHHHHHHHHHHTC
T ss_pred CcccEE--EEECCCCCCHHHHHHHHHHHhCC
Confidence 555554 45588999999998888776543
No 451
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=57.10 E-value=4.9 Score=38.32 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.8
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=|.+-|-||+|||+|++-+.+.
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45788899999999999998764
No 452
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=56.75 E-value=4.4 Score=37.90 Aligned_cols=23 Identities=9% Similarity=-0.073 Sum_probs=19.5
Q ss_pred cEEEEccCCCCchhhHHHHHHHh
Q 046016 777 GLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
-+=|.+-|-||+|||+|++-+.+
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35578889999999999998875
No 453
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=55.66 E-value=2.1 Score=39.94 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=18.6
Q ss_pred cEEEEccCCCCchhhHHHHHHH
Q 046016 777 GLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~ 798 (1112)
-+=|.+-|-||||||+|++-+.
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~ 54 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFA 54 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSB
T ss_pred ceEEEEECCCCCCHHHHHHHHh
Confidence 3557888999999999998774
No 454
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=55.51 E-value=5.2 Score=44.26 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.9
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.++|-|-||||||+|++.|.+..
T Consensus 79 ~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 56778999999999999998765
No 455
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=55.41 E-value=6.4 Score=43.10 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=19.9
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+-+|..-|++|+|||+|++++.+.
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CceEEEEcCCCCCHHHHHHHHHhc
Confidence 346778899999999999998653
No 456
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=55.35 E-value=11 Score=37.67 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.5
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
-+-|.+.|-+|+|||+|++-|+....
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46677889999999999999986443
No 457
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=55.13 E-value=3.3 Score=43.73 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=21.1
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+|-++.+.|-+|||||||.+-|...
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5667888899999999999998653
No 458
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=54.50 E-value=5.3 Score=45.03 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++-+.|-.|||||||+|-|.-
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 6788889999999999999999864
No 459
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=54.49 E-value=5.2 Score=42.87 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=22.7
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
.+|=++-+.|-+|||||||.+.|.+..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 466677788999999999999997753
No 460
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=54.43 E-value=6.9 Score=45.33 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=22.4
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
+-..|-+.|.||+|||+|.+-|.....+
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~ 64 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKG 64 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCc
Confidence 3456788999999999999999765443
No 461
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=53.99 E-value=5.9 Score=43.24 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.1
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
|+-|-+.|.||+|||||.+-|.+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 4557788999999999999998754
No 462
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=53.71 E-value=5.3 Score=43.36 Aligned_cols=118 Identities=15% Similarity=0.107 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccccchhHHHHHHhcCCcccchhcccccccchhhh
Q 046016 661 KAYYLRQMNIWGTSAVKQRQLSKMLDEWAVYIRRKYGNKQLSSSVYLTEAEPFLEQYARRSPENQVLIGSAGNLVRVEEF 740 (1112)
Q Consensus 661 ~aYylrqmk~WGtSa~kq~el~~~ldeWA~yir~k~g~k~L~ss~YLseAEPFleqyakRSp~n~~LiGaaG~lv~~e~f 740 (1112)
..||.+.++. ....++|.....+-+.-+.. ...+....|++||--+-+...+... ...+...+.
T Consensus 99 ~~~ya~iv~e----~~~~R~li~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 162 (444)
T 2q6t_A 99 AEHYARIVAE----KWTLRRLIQAAGEAMRLAYE----EAGSLDEILDTAGKKILEVALTKTD--------TEARPMREL 162 (444)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHCSCC--------CSSEEHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHhhc----cccCHHHHHHHHHHHHHHHHhhccC--------CCCccHHHH
Confidence 4455555543 22455555555444332222 2234455677787777666654321 122333333
Q ss_pred H----HHhhcCCCCCCCccccccCCCCCCcccccccc--CCCcEEEEccCCCCchhhHHHHHHHh
Q 046016 741 L----AVIEGGRDEEGDLETEREAPPSSPRQAKDEVQ--KDEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 741 L----Ai~~~~~deEgdl~~~r~~~p~sp~~~~d~v~--k~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+ .-++.-....+. ..+ -++.....|.+- =.+|=++.+-|-||+|||+||..|..
T Consensus 163 ~~~~~~~~~~~~~~~~~---~~~--i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 163 VHETFEHIEALFQNKGE---VAG--VRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp HHHHHHHTTC---------------CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC---CCc--ccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 2 222211111111 111 223344555332 12566788889999999999887643
No 463
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=53.09 E-value=5.5 Score=44.00 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=22.8
Q ss_pred cCCCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 773 QKDEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 773 ~k~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
+=.+|=++-+.|-+|||||||.+.|...
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3356667778899999999999999764
No 464
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=52.93 E-value=5.6 Score=45.07 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=19.3
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
+..+|.|.|.|||||||||.-|..+-
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34456666999999999999887543
No 465
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=52.75 E-value=6.9 Score=43.13 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++.+-|-+|||||||.+-|+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 5666788999999999999998765
No 466
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=52.60 E-value=5.4 Score=44.97 Aligned_cols=22 Identities=45% Similarity=0.570 Sum_probs=19.0
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|++-|-||||||+|++.|-+.-
T Consensus 44 VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 44 VFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp EEEECCSSSSHHHHHHHGGGGB
T ss_pred eEeecCchHHHHHHHHHHHHHH
Confidence 5677999999999999997654
No 467
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=52.57 E-value=5.8 Score=44.44 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.0
Q ss_pred EccCCCCchhhHHHHHHHhcC
Q 046016 781 FFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 781 FFPgIPGcaKSaLCkei~~~p 801 (1112)
.+-|-||||||+|++.|-+..
T Consensus 54 Ll~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 54 LMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp EEECCTTSSHHHHHHHHHHHT
T ss_pred EEEcCCCCCHHHHHHHHHHHc
Confidence 345889999999999986654
No 468
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=52.53 E-value=5.9 Score=44.76 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=21.5
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPG 802 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pg 802 (1112)
|-.+.|-|-||||||+|++.|.....
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34677889999999999999987554
No 469
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=52.51 E-value=6.2 Score=44.48 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||+|-|.
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~ 333 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLA 333 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 467788899999999999999984
No 470
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=52.20 E-value=5.2 Score=39.65 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=19.3
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
.-|-+.|-||+|||+|.+.|...
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTS
T ss_pred CeEEEEeCCCCCHHHHHHHHHCC
Confidence 34677899999999999999764
No 471
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=51.84 E-value=6.2 Score=40.66 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=18.8
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
.=|.+-|-||||||+|++-+.+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34667899999999999998653
No 472
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=51.54 E-value=17 Score=39.53 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
...+=|.+.|-||+|||+|.+-+.+..
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~ 346 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQ 346 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCC
Confidence 345677899999999999999987643
No 473
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=51.52 E-value=9.4 Score=39.51 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=23.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
.+| +..+.|-.|||||+|.+.|.-..|+
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~~llg~ 50 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIKWVFGE 50 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHHHTSCC
T ss_pred CCC-cEEEECCCCCcHHHHHHHHHHHhCC
Confidence 577 7789999999999999998765543
No 474
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=51.50 E-value=7.8 Score=42.21 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=22.4
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
+.++++-|-+|||||+|+.+|.+..++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCcc
Confidence 347788999999999999999876543
No 475
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=51.38 E-value=6.4 Score=44.62 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.2
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||+|-|.
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~ 315 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILV 315 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 467788899999999999999983
No 476
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=51.35 E-value=16 Score=40.70 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=18.8
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-++.|.|-+||||||+|.-|..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 455666669999999999888744
No 477
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=51.21 E-value=6.7 Score=44.15 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++...|-.|||||||.|-|.
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~ 390 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFT 390 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
Confidence 567788899999999999999984
No 478
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=50.98 E-value=5 Score=45.81 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+-|-.|||||||.+.|+
T Consensus 346 ~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 346 PLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred cCCCEEEEEeeCCCCHHHHHHHHH
Confidence 567788899999999999998654
No 479
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=50.97 E-value=6.9 Score=39.12 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=20.9
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~p 801 (1112)
-+-|.+.|-+|+|||+|++-|.+..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4567788999999999999997543
No 480
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=50.97 E-value=5.9 Score=44.70 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+.|-.|||||||+|-|.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~ 391 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLL 391 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 467778889999999999999983
No 481
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=50.92 E-value=6.7 Score=42.24 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=18.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
+|-++.+-|-||||||+||..+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344666669999999999988654
No 482
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=50.81 E-value=9.5 Score=37.43 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=19.9
Q ss_pred CcEEEEccCCCCchhhHHHHHHHh
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.-+=|.+.|-||+|||+|++-+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 335578899999999999998864
No 483
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=50.34 E-value=13 Score=43.64 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEEEccCCCCchhhHHHHHHHhcC
Q 046016 778 LIVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~p 801 (1112)
--|+|-|=||||||+|++.|-+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467788999999999999987654
No 484
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=50.10 E-value=5.5 Score=40.01 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=18.5
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
+=|.+.|-||+|||||.+-|..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4467889999999999998754
No 485
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=49.90 E-value=6.5 Score=43.49 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=21.5
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
..|+-|-+.|.||||||||.+-|.+.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 45677888999999999999998754
No 486
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=49.70 E-value=4.5 Score=44.63 Aligned_cols=26 Identities=27% Similarity=0.140 Sum_probs=21.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHhc
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
..|.+|-+.|-||||||||.+-|..+
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 45677889999999999999988544
No 487
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=49.60 E-value=6.3 Score=44.33 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+.|-.|||||||.|-|
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l 389 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLI 389 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 56778889999999999999998
No 488
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=49.47 E-value=6.2 Score=43.59 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=17.5
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
-+|.|.|.||+||||||.-|..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4566689999999999877654
No 489
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=49.47 E-value=8.6 Score=40.00 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=18.0
Q ss_pred EEEEccCCCCchhhHHHHHHHhc
Q 046016 778 LIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~~ 800 (1112)
--|+|-|=||||||.|+..|.+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34566789999999998887653
No 490
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=48.95 E-value=8.4 Score=43.64 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.9
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
.+|=++-+.|-+|||||||.|-|..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhc
Confidence 5778888999999999999998854
No 491
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=48.90 E-value=7.6 Score=43.97 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.5
Q ss_pred EEEEccCCCCchhhHHHHHHHh
Q 046016 778 LIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 778 livFFPgIPGcaKSaLCkei~~ 799 (1112)
=++.+-|-.|||||||++-|.-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4667889999999999988654
No 492
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=48.72 E-value=7.1 Score=43.22 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=20.0
Q ss_pred cEEEEccCCCCchhhHHHHHHHhc
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.+=|.+.|-||||||+|++-+.+.
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~ 64 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGE 64 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456788999999999999998754
No 493
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=48.40 E-value=5.9 Score=44.67 Aligned_cols=25 Identities=8% Similarity=0.114 Sum_probs=20.7
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNA 800 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~ 800 (1112)
.|.++.+-|-+|||||||.+-|+..
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4556788999999999999988653
No 494
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=48.07 E-value=7.8 Score=42.05 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=18.5
Q ss_pred EEccCCCCchhhHHHHHHHhcC
Q 046016 780 VFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 780 vFFPgIPGcaKSaLCkei~~~p 801 (1112)
|-+.|-||||||||.+-|.+..
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4567999999999999987753
No 495
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=47.33 E-value=8.5 Score=40.04 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=19.2
Q ss_pred EEEccCCCCchhhHHHHHHHhcC
Q 046016 779 IVFFPGIPGCAKSALCKELLNAP 801 (1112)
Q Consensus 779 ivFFPgIPGcaKSaLCkei~~~p 801 (1112)
++-+-|..|||||||.+.|+...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 45667999999999999998653
No 496
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=46.82 E-value=8.3 Score=41.84 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=22.3
Q ss_pred cEEEEccCCCCchhhHHHHHHHhcCCC
Q 046016 777 GLIVFFPGIPGCAKSALCKELLNAPGG 803 (1112)
Q Consensus 777 GlivFFPgIPGcaKSaLCkei~~~pgg 803 (1112)
..++++-|-+|||||+|+.+|.+..++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~ 36 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPV 36 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCC
Confidence 346778899999999999999876553
No 497
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=46.69 E-value=7.8 Score=43.92 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.3
Q ss_pred CCcEEEEccCCCCchhhHHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELL 798 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~ 798 (1112)
.+|=++-+.|-.|||||||.|-|.
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~ 402 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLM 402 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Confidence 567788999999999999999983
No 498
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=46.47 E-value=6.5 Score=44.29 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.6
Q ss_pred CCcEEEEccCCCCchhhHHHHHH
Q 046016 775 DEGLIVFFPGIPGCAKSALCKEL 797 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei 797 (1112)
.+|=++-+.|-.|||||||.|-|
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l 387 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLI 387 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHH
Confidence 56778889999999999999887
No 499
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=46.41 E-value=18 Score=39.97 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=24.1
Q ss_pred CcEEEEccCCCCchhhHHHHHHHhcCCCC-CCCcceeccccccc
Q 046016 776 EGLIVFFPGIPGCAKSALCKELLNAPGGL-GDNRPIHTLMGDLT 818 (1112)
Q Consensus 776 ~GlivFFPgIPGcaKSaLCkei~~~pgg~-g~~rpv~sLmGD~i 818 (1112)
+..|+| .|-+|+||||+|--|..+.... |. .|-..-.|.-
T Consensus 100 ~~vI~i-vG~~GvGKTT~a~~LA~~l~~~~G~--kVllvd~D~~ 140 (433)
T 2xxa_A 100 PAVVLM-AGLQGAGKTTSVGKLGKFLREKHKK--KVLVVSADVY 140 (433)
T ss_dssp SEEEEE-ECSTTSSHHHHHHHHHHHHHHTSCC--CEEEEECCCS
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHHhcCC--eEEEEecCCC
Confidence 345555 4999999999988776543322 22 3444444443
No 500
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=46.11 E-value=10 Score=37.72 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=20.4
Q ss_pred CCcEEEEccCCCCchhhHHHHHHHh
Q 046016 775 DEGLIVFFPGIPGCAKSALCKELLN 799 (1112)
Q Consensus 775 ~~GlivFFPgIPGcaKSaLCkei~~ 799 (1112)
...+=|.+-|-||+|||+|++-+.+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~ 177 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTT 177 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceeEEEEECCCCCChHHHHHHHHh
Confidence 3456678889999999999988764
Done!