BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046017
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 74/199 (37%), Gaps = 32/199 (16%)
Query: 105 YLRVLRVEGAAIRELPESIGKSTLLSELELKN-------CSELKLKSLRRIKMSKCSNLK 157
+L+ ++ A + ELP++ + L L L S L LR + + C L
Sbjct: 105 HLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT 164
Query: 158 RFPK-IASCNKVG--------------ITGIKRLSST---------LRLKNCXXXXXXXX 193
P+ +AS + G TGI+ L ++ L+++N
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA 224
Query: 194 XXCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLA 253
+ K L L+ C L P G A L L + CS+ +LP + L L L
Sbjct: 225 IHHLPK-LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 254 IIDCKIFKRLPNELGNLKC 272
+ C RLP+ + L
Sbjct: 284 LRGCVNLSRLPSLIAQLPA 302
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 215 LPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274
+P SLG L+ L +LK+ +P L +K+L L + + +P+ L N L
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 275 ALIVKGTAIR-EVPESLGYLSSLAKLELSNNNL 306
+ + + E+P+ +G L +LA L+LSNN+
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR-EVPESLGYLSSLA 297
+P + + L L + I +P+E+G+L+ L L + + +P+++ L+ L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 704
Query: 298 KLELSNNNL 306
+++LSNNNL
Sbjct: 705 EIDLSNNNL 713
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 214 RLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL 273
++P +L + L L + ++PSSL L L L + + +P EL +K L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 274 AALIVKGTAIR-EVPESLGYLSSLAKLELSNNNL 306
LI+ + E+P L ++L + LSNN L
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 215 LPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274
+P SLG L+ L +LK+ +P L +K+L L + + +P+ L N L
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 275 ALIVKGTAIR-EVPESLGYLSSLAKLELSNNNL 306
+ + + E+P+ +G L +LA L+LSNN+
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR-EVPESLGYLSSLA 297
+P + + L L + I +P+E+G+L+ L L + + +P+++ L+ L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707
Query: 298 KLELSNNNL 306
+++LSNNNL
Sbjct: 708 EIDLSNNNL 716
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 214 RLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL 273
++P +L + L L + ++PSSL L L L + + +P EL +K L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 274 AALIVKGTAIR-EVPESLGYLSSLAKLELSNNNL 306
LI+ + E+P L ++L + LSNN L
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 29/143 (20%)
Query: 197 MLKSLRFLET--IACKKLERLPESL-GQLALLCELKMIKCSSFESLPSSLCMLKSLTPLA 253
+ K L+ LET + KL+ LP + QL L EL++ + LKSL P
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-----------LKSLPP-- 126
Query: 254 IIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESL-GYLSSLAKLELSNNNLKRTPEX 312
++F L L L + ++ +P+ + L+SL +L L NN LKR PE
Sbjct: 127 ----RVFDSLTK-------LTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 313 XXXXXXXXXXXPFENNS-DRIPE 334
+NN R+PE
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPE 198
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 228 LKMIKCSSFES-LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV 286
LKM S E+ LP L++LT L + C++ + P +L L L + ++ V
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Query: 287 PESL-GYLSSLAKLELSNN 304
P+ + L+SL K+ L N
Sbjct: 510 PDGIFDRLTSLQKIWLHTN 528
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 220 GQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN-ELGNLKCLAAL-- 276
G L +L L + + +SLP + ++L L ++D F RL + LG L+ L L
Sbjct: 74 GTLPVLGTLDL-SHNQLQSLP---LLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQE 128
Query: 277 -IVKGTAIREVPESL-GYLSSLAKLELSNNNLKRTP 310
+KG ++ +P L L KL L+NNNL P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 220 GQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN-ELGNLKCLAAL-- 276
G L +L L + + +SLP + ++L L ++D F RL + LG L+ L L
Sbjct: 74 GTLPVLGTLDL-SHNQLQSLP---LLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQE 128
Query: 277 -IVKGTAIREVPESL-GYLSSLAKLELSNNNLKRTP 310
+KG ++ +P L L KL L+NNNL P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 220 GQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN-ELGNLKCLAAL-- 276
G L +L L + + +SLP + ++L L ++D F RL + LG L+ L L
Sbjct: 74 GTLPVLGTLDL-SHNQLQSLP---LLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQE 128
Query: 277 -IVKGTAIREVPESL-GYLSSLAKLELSNNNLKRTP 310
+KG ++ +P L L KL L+NNNL P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 220 GQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN-ELGNLKCLAAL-- 276
G L +L L + + +SLP + ++L L ++D F RL + LG L+ L L
Sbjct: 75 GTLPVLGTLDL-SHNQLQSLP---LLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQE 129
Query: 277 -IVKGTAIREVPESL-GYLSSLAKLELSNNNLKRTP 310
+KG ++ +P L L KL L+NNNL P
Sbjct: 130 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 165
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 220 GQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN-ELGNLKCLAAL-- 276
G L +L L + + +SLP + ++L L ++D F RL + LG L+ L L
Sbjct: 74 GTLPVLGTLDL-SHNQLQSLP---LLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQE 128
Query: 277 -IVKGTAIREVPESL-GYLSSLAKLELSNNNLKRTP 310
+KG ++ +P L L KL L+NNNL P
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,640,095
Number of Sequences: 62578
Number of extensions: 361913
Number of successful extensions: 695
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 35
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)