Query 046017
Match_columns 443
No_of_seqs 538 out of 4066
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:56:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.9E-37 4.2E-42 337.8 22.4 360 4-370 54-454 (968)
2 PLN00113 leucine-rich repeat r 100.0 9E-36 2E-40 324.7 21.6 348 17-370 162-573 (968)
3 PLN03210 Resistant to P. syrin 100.0 9.5E-31 2.1E-35 286.4 28.4 372 16-414 555-984 (1153)
4 KOG4194 Membrane glycoprotein 100.0 4.7E-33 1E-37 264.0 2.2 375 10-405 69-488 (873)
5 KOG0444 Cytoskeletal regulator 100.0 3.2E-32 6.9E-37 260.3 -4.5 310 18-367 54-384 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 7.5E-32 1.6E-36 257.7 -3.2 331 17-370 5-364 (1255)
7 KOG4194 Membrane glycoprotein 100.0 2.2E-30 4.8E-35 246.0 5.4 334 20-370 53-418 (873)
8 KOG0472 Leucine-rich repeat pr 100.0 1.7E-31 3.7E-36 243.3 -7.5 163 17-182 66-296 (565)
9 KOG0472 Leucine-rich repeat pr 100.0 2.2E-31 4.8E-36 242.5 -7.2 368 18-396 44-540 (565)
10 KOG0618 Serine/threonine phosp 99.9 5.7E-28 1.2E-32 240.8 -2.5 327 20-358 46-465 (1081)
11 PLN03210 Resistant to P. syrin 99.9 3.1E-23 6.8E-28 227.4 23.6 296 19-332 589-909 (1153)
12 KOG0618 Serine/threonine phosp 99.9 1.1E-26 2.4E-31 231.6 -4.9 328 17-357 66-488 (1081)
13 PRK15387 E3 ubiquitin-protein 99.9 3.7E-21 7.9E-26 197.5 16.8 252 19-358 201-458 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 4.7E-21 1E-25 196.7 16.6 253 44-381 202-458 (788)
15 PRK15370 E3 ubiquitin-protein 99.8 2.2E-20 4.8E-25 192.9 12.6 251 19-358 178-428 (754)
16 PRK15370 E3 ubiquitin-protein 99.8 1.8E-19 3.9E-24 186.2 14.9 227 68-367 179-410 (754)
17 KOG4237 Extracellular matrix p 99.8 2E-20 4.3E-25 171.1 -0.7 347 8-363 53-462 (498)
18 KOG0617 Ras suppressor protein 99.7 2.3E-19 5.1E-24 146.3 -3.0 162 197-366 31-194 (264)
19 KOG0617 Ras suppressor protein 99.7 2.6E-19 5.7E-24 146.0 -3.6 152 186-339 43-195 (264)
20 cd00116 LRR_RI Leucine-rich re 99.7 4.6E-18 9.9E-23 162.4 1.4 162 195-356 132-318 (319)
21 cd00116 LRR_RI Leucine-rich re 99.7 6E-18 1.3E-22 161.5 1.4 156 199-359 108-292 (319)
22 KOG4237 Extracellular matrix p 99.6 1.6E-17 3.4E-22 152.3 -4.1 66 267-332 270-337 (498)
23 KOG0532 Leucine-rich repeat (L 99.4 1.2E-14 2.6E-19 139.2 -6.2 170 186-365 85-254 (722)
24 KOG0532 Leucine-rich repeat (L 99.3 4.6E-14 1E-18 135.3 -2.9 162 202-373 78-239 (722)
25 COG4886 Leucine-rich repeat (L 99.2 2.2E-11 4.7E-16 119.9 7.1 134 195-332 159-292 (394)
26 COG4886 Leucine-rich repeat (L 99.2 2.5E-11 5.4E-16 119.4 7.5 199 47-313 97-296 (394)
27 KOG1259 Nischarin, modulator o 99.2 1.2E-11 2.6E-16 110.1 2.9 129 223-360 284-414 (490)
28 KOG4658 Apoptotic ATPase [Sign 99.2 2.2E-11 4.8E-16 128.5 4.9 85 17-101 543-629 (889)
29 KOG3207 Beta-tubulin folding c 99.2 1.2E-11 2.5E-16 115.6 2.2 197 102-329 119-338 (505)
30 KOG1259 Nischarin, modulator o 99.2 6.5E-12 1.4E-16 111.9 0.5 135 196-335 281-417 (490)
31 KOG1909 Ran GTPase-activating 99.1 6.2E-12 1.3E-16 114.3 -0.7 249 38-331 25-312 (382)
32 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.8E-16 115.3 0.3 206 118-358 112-339 (505)
33 PLN03150 hypothetical protein; 99.1 3.5E-10 7.5E-15 116.9 8.9 115 9-137 403-525 (623)
34 PF14580 LRR_9: Leucine-rich r 99.1 5.8E-11 1.3E-15 101.2 2.5 84 246-331 41-127 (175)
35 KOG1909 Ran GTPase-activating 99.0 2.3E-11 5E-16 110.7 -1.4 222 17-283 28-310 (382)
36 PF14580 LRR_9: Leucine-rich r 99.0 3.4E-10 7.3E-15 96.5 5.1 110 243-360 15-128 (175)
37 PLN03150 hypothetical protein; 98.9 2.5E-09 5.4E-14 110.5 7.9 106 224-329 419-527 (623)
38 KOG4658 Apoptotic ATPase [Sign 98.9 1.8E-09 3.8E-14 114.3 4.7 278 15-334 567-865 (889)
39 KOG0531 Protein phosphatase 1, 98.7 2E-09 4.4E-14 106.3 0.4 160 195-360 158-320 (414)
40 KOG2120 SCF ubiquitin ligase, 98.7 5.9E-10 1.3E-14 99.5 -4.7 136 19-154 185-349 (419)
41 KOG0531 Protein phosphatase 1, 98.7 2.5E-09 5.4E-14 105.7 -1.3 151 195-357 136-289 (414)
42 PF13855 LRR_8: Leucine rich r 98.6 3.1E-08 6.8E-13 69.3 4.1 61 19-79 1-61 (61)
43 PF13855 LRR_8: Leucine rich r 98.6 4.7E-08 1E-12 68.4 3.9 58 248-305 2-60 (61)
44 KOG4341 F-box protein containi 98.5 5.9E-09 1.3E-13 97.3 -3.5 128 19-157 138-282 (483)
45 PRK15386 type III secretion pr 98.5 2.8E-07 6.2E-12 88.2 7.6 135 195-356 48-188 (426)
46 PRK15386 type III secretion pr 98.4 7.7E-07 1.7E-11 85.2 8.4 124 184-329 61-189 (426)
47 KOG2120 SCF ubiquitin ligase, 98.4 1.5E-08 3.2E-13 90.7 -3.9 60 196-257 310-373 (419)
48 PF12799 LRR_4: Leucine Rich r 98.4 2.9E-07 6.4E-12 59.2 3.1 39 295-333 2-40 (44)
49 KOG1859 Leucine-rich repeat pr 98.4 5.7E-09 1.2E-13 103.5 -7.9 86 241-329 181-266 (1096)
50 KOG4579 Leucine-rich repeat (L 98.3 2.8E-08 6E-13 78.9 -2.7 88 271-363 53-141 (177)
51 KOG4579 Leucine-rich repeat (L 98.3 2.5E-08 5.5E-13 79.1 -3.0 112 224-337 28-143 (177)
52 PF12799 LRR_4: Leucine Rich r 98.3 7.2E-07 1.6E-11 57.4 3.8 41 271-311 1-41 (44)
53 KOG1859 Leucine-rich repeat pr 98.2 1.1E-07 2.3E-12 94.8 -3.2 105 247-360 164-269 (1096)
54 KOG2982 Uncharacterized conser 98.1 5.4E-07 1.2E-11 80.9 -0.5 40 41-80 69-110 (418)
55 KOG2982 Uncharacterized conser 98.0 1.7E-06 3.7E-11 77.7 1.2 62 40-101 42-108 (418)
56 KOG4341 F-box protein containi 98.0 7.2E-07 1.6E-11 83.6 -1.5 86 43-139 138-228 (483)
57 COG5238 RNA1 Ran GTPase-activa 97.9 1.9E-06 4E-11 76.5 -0.6 82 18-100 29-130 (388)
58 KOG3665 ZYG-1-like serine/thre 97.9 5.3E-06 1.2E-10 86.1 2.2 121 18-139 121-262 (699)
59 COG5238 RNA1 Ran GTPase-activa 97.7 4.5E-06 9.8E-11 74.1 -1.7 137 197-334 155-320 (388)
60 KOG1644 U2-associated snRNP A' 97.7 4.1E-05 8.9E-10 65.3 4.0 103 248-353 43-148 (233)
61 KOG3665 ZYG-1-like serine/thre 97.5 4.5E-05 9.7E-10 79.3 1.5 108 8-117 137-263 (699)
62 KOG1644 U2-associated snRNP A' 97.4 0.00036 7.7E-09 59.7 5.8 54 44-99 43-97 (233)
63 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.6E-09 65.1 2.6 101 222-325 42-151 (260)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00028 6.1E-09 62.8 2.2 62 17-80 41-104 (260)
65 PF13306 LRR_5: Leucine rich r 96.7 0.0083 1.8E-07 48.5 7.6 119 195-319 8-128 (129)
66 KOG1947 Leucine rich repeat pr 96.7 0.00031 6.8E-09 70.9 -1.2 105 41-156 186-308 (482)
67 KOG2123 Uncharacterized conser 96.7 8E-05 1.7E-09 66.6 -4.7 81 17-101 17-99 (388)
68 KOG1947 Leucine rich repeat pr 96.4 0.00057 1.2E-08 69.0 -1.3 129 65-231 186-329 (482)
69 KOG2123 Uncharacterized conser 96.1 0.0005 1.1E-08 61.7 -3.1 81 246-329 18-100 (388)
70 PF00560 LRR_1: Leucine Rich R 96.0 0.0028 6E-08 33.8 0.8 16 69-84 2-17 (22)
71 PF00560 LRR_1: Leucine Rich R 95.9 0.004 8.7E-08 33.2 1.1 17 273-289 2-18 (22)
72 PF13306 LRR_5: Leucine rich r 95.8 0.03 6.6E-07 45.2 6.7 111 218-334 7-119 (129)
73 PF13504 LRR_7: Leucine rich r 95.3 0.0088 1.9E-07 29.6 1.1 13 319-331 3-15 (17)
74 PF13504 LRR_7: Leucine rich r 95.1 0.013 2.8E-07 29.0 1.3 15 295-309 2-16 (17)
75 smart00370 LRR Leucine-rich re 94.2 0.04 8.8E-07 30.6 2.1 20 317-336 2-21 (26)
76 smart00369 LRR_TYP Leucine-ric 94.2 0.04 8.8E-07 30.6 2.1 20 317-336 2-21 (26)
77 KOG0473 Leucine-rich repeat pr 92.6 0.0035 7.5E-08 55.0 -6.1 84 245-329 40-123 (326)
78 KOG4308 LRR-containing protein 92.6 0.0031 6.7E-08 63.0 -7.4 165 193-358 109-303 (478)
79 smart00369 LRR_TYP Leucine-ric 92.4 0.14 3E-06 28.3 2.4 20 293-312 1-20 (26)
80 smart00370 LRR Leucine-rich re 92.4 0.14 3E-06 28.3 2.4 20 293-312 1-20 (26)
81 KOG4308 LRR-containing protein 92.0 0.0016 3.5E-08 64.9 -10.1 33 106-138 89-126 (478)
82 KOG0473 Leucine-rich repeat pr 91.6 0.0041 8.8E-08 54.5 -6.8 86 266-356 37-122 (326)
83 smart00364 LRR_BAC Leucine-ric 91.5 0.096 2.1E-06 29.0 0.9 19 344-362 1-19 (26)
84 smart00364 LRR_BAC Leucine-ric 88.4 0.31 6.8E-06 26.9 1.4 18 317-334 2-19 (26)
85 KOG3864 Uncharacterized conser 86.7 0.11 2.4E-06 44.8 -1.5 35 225-259 103-137 (221)
86 KOG3864 Uncharacterized conser 86.5 0.21 4.5E-06 43.2 -0.0 34 68-101 102-136 (221)
87 smart00365 LRR_SD22 Leucine-ri 82.3 1.2 2.5E-05 24.8 1.8 16 317-332 2-17 (26)
88 PF13516 LRR_6: Leucine Rich r 78.1 0.46 1E-05 25.6 -0.7 12 68-79 3-14 (24)
89 smart00368 LRR_RI Leucine rich 69.0 3.8 8.2E-05 23.1 1.6 14 317-330 2-15 (28)
90 smart00367 LRR_CC Leucine-rich 62.1 5.5 0.00012 21.8 1.4 15 143-157 2-16 (26)
91 KOG3763 mRNA export factor TAP 55.8 6.4 0.00014 39.5 1.5 37 17-53 216-254 (585)
92 PF08263 LRRNT_2: Leucine rich 44.9 7.6 0.00016 24.3 0.1 11 5-15 32-42 (43)
93 KOG3763 mRNA export factor TAP 35.9 21 0.00046 36.0 1.6 60 269-329 216-282 (585)
94 PF05725 FNIP: FNIP Repeat; I 25.0 66 0.0014 20.2 2.0 11 343-353 32-42 (44)
95 TIGR00864 PCC polycystin catio 21.2 61 0.0013 39.6 2.2 31 277-307 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-37 Score=337.82 Aligned_cols=360 Identities=21% Similarity=0.273 Sum_probs=268.0
Q ss_pred CCCCCccCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccC-CCCcccEEEeecCchh-h
Q 046017 4 KIPSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELG-NLETLLVLRVEGAAIR-E 81 (443)
Q Consensus 4 ~~~~c~~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~l~~n~l~-~ 81 (443)
+.++|.|.|+.|....+++.|+++++.+.+.+|.++..+++|++|++++|.+.+.+|..+. .+++|++|++++|.++ .
T Consensus 54 ~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~ 133 (968)
T PLN00113 54 SADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGS 133 (968)
T ss_pred CCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccc
Confidence 4689999999998778999999999998888888899999999999999998888887755 8999999999998886 5
Q ss_pred hhhhhccCCCCcEEecCCCC----------CCCCccEEEEeCCCC-cccCccccCCCCCCEEeccCCCCC--------CC
Q 046017 82 LSQSLGQLALLSELELKNSS----------EFEYLRVLRVEGAAI-RELPESIGKSTLLSELELKNCSEL--------KL 142 (443)
Q Consensus 82 lp~~~~~l~~L~~L~ls~~~----------~l~~L~~L~l~~n~~-~~lp~~l~~l~~L~~L~l~~n~~~--------~l 142 (443)
+|. +.+++|++|++++|. .+++|++|++++|.+ +.+|..+.++++|++|++++|... .+
T Consensus 134 ~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 211 (968)
T PLN00113 134 IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211 (968)
T ss_pred cCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence 554 457889999988873 568889999988884 477888888889999999888754 67
Q ss_pred CCcCEEEccCCCCCCCCCCC----CCCccccc--cCcc-ccccccc---------ccCCCCCcccCCcccCCcccceeec
Q 046017 143 KSLRRIKMSKCSNLKRFPKI----ASCNKVGI--TGIK-RLSSTLR---------LKNCSSLESLPSSLCMLKSLRFLET 206 (443)
Q Consensus 143 ~~L~~L~l~~~~~l~~~~~~----~~l~~L~l--~~l~-~l~~~l~---------~~~~~~l~~lp~~~~~l~~L~~L~l 206 (443)
++|++|++++|.....+|.. .+++.|++ +.+. .+|..+. ..+|...+.+|.++..+++|++|++
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEEC
Confidence 88888888887766667754 44555665 4333 3333221 1133333456666777777777777
Q ss_pred ccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCc-c
Q 046017 207 IACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR-E 285 (443)
Q Consensus 207 s~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~ 285 (443)
++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|+++ .
T Consensus 292 s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~ 371 (968)
T PLN00113 292 SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371 (968)
T ss_pred cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence 777777777777777777777777777777777777777777777777777777777777777777777777777776 5
Q ss_pred cChhccCCCCCCEEEccCCCCC-CCChhhhCCCCCCeeeCCCCCC-CccCcccccCCCCCcccccccccccCCCCcc-cC
Q 046017 286 VPESLGYLSSLAKLELSNNNLK-RTPESLYQLSSLKYLKPFENNS-DRIPEYLRSSPTSIPSELRSLNLSVDSGNSL-NL 362 (443)
Q Consensus 286 lp~~~~~l~~L~~L~ls~n~l~-~lp~~l~~l~~L~~L~ls~n~l-~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l-~~ 362 (443)
+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++ +.+|..+..+ ++|+.|++++|.++.. |.
T Consensus 372 ~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~~~ 446 (968)
T PLN00113 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-----PLVYFLDISNNNLQGRINS 446 (968)
T ss_pred CChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC-----CCCCEEECcCCcccCccCh
Confidence 6777777777777777777776 5677777788888888888777 4566666554 6788888888866543 43
Q ss_pred ChhhhhhH
Q 046017 363 DLNKLSEI 370 (443)
Q Consensus 363 ~~~~l~~l 370 (443)
.+..++.+
T Consensus 447 ~~~~l~~L 454 (968)
T PLN00113 447 RKWDMPSL 454 (968)
T ss_pred hhccCCCC
Confidence 33333433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9e-36 Score=324.75 Aligned_cols=348 Identities=23% Similarity=0.285 Sum_probs=208.7
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchh-hhhhhhccCCCCcEE
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIR-ELSQSLGQLALLSEL 95 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L 95 (443)
.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+. .+|..++++++|++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 241 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL 241 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence 5677888888888777777777777888888888877777777777777777777777777776 667777777777777
Q ss_pred ecCCCC----------CCCCccEEEEeCCCCc-ccCccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCC
Q 046017 96 ELKNSS----------EFEYLRVLRVEGAAIR-ELPESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNL 156 (443)
Q Consensus 96 ~ls~~~----------~l~~L~~L~l~~n~~~-~lp~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l 156 (443)
++++|. ++++|++|++++|.+. .+|..+.++++|++|++++|... .+++|++|++++|...
T Consensus 242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 777652 3456666666666643 45555666666666666665432 3445555555554433
Q ss_pred CC------------------------CCCC----CCCccccc--cCcc-ccccccc---------ccCCCCCcccCCccc
Q 046017 157 KR------------------------FPKI----ASCNKVGI--TGIK-RLSSTLR---------LKNCSSLESLPSSLC 196 (443)
Q Consensus 157 ~~------------------------~~~~----~~l~~L~l--~~l~-~l~~~l~---------~~~~~~l~~lp~~~~ 196 (443)
.. +|.. .+++.|++ +.+. .+|..+. ..++...+.+|..++
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 401 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh
Confidence 33 3332 22233333 2222 2222111 112222234555555
Q ss_pred CCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceE
Q 046017 197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL 276 (443)
Q Consensus 197 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 276 (443)
.+++|+.|++++|.+.+.+|..+..++.|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L 480 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENL 480 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEE
Confidence 66666666666666666666666666666666666666666665555556666666666666555555433 23556666
Q ss_pred EecCCCCc-ccChhccCCCCCCEEEccCCCCC-CCChhhhCCCCCCeeeCCCCCC-CccCcccccCCCCCcccccccccc
Q 046017 277 IVKGTAIR-EVPESLGYLSSLAKLELSNNNLK-RTPESLYQLSSLKYLKPFENNS-DRIPEYLRSSPTSIPSELRSLNLS 353 (443)
Q Consensus 277 ~l~~n~l~-~lp~~~~~l~~L~~L~ls~n~l~-~lp~~l~~l~~L~~L~ls~n~l-~~lp~~~~~~~~~lp~~L~~L~l~ 353 (443)
++++|+++ .+|..+..+++|+.|++++|++. .+|..+..+++|++|++++|.+ +.+|..+..+ ++|++|+++
T Consensus 481 ~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-----~~L~~L~Ls 555 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM-----PVLSQLDLS 555 (968)
T ss_pred ECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc-----ccCCEEECC
Confidence 66666665 45555666666666666666666 4566666666666666666666 3455555444 566666666
Q ss_pred cCCCC-cccCChhhhhhH
Q 046017 354 VDSGN-SLNLDLNKLSEI 370 (443)
Q Consensus 354 ~N~l~-~l~~~~~~l~~l 370 (443)
+|.+. .+|..+..++.+
T Consensus 556 ~N~l~~~~p~~l~~l~~L 573 (968)
T PLN00113 556 QNQLSGEIPKNLGNVESL 573 (968)
T ss_pred CCcccccCChhHhcCccc
Confidence 66554 445555444444
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.98 E-value=9.5e-31 Score=286.40 Aligned_cols=372 Identities=25% Similarity=0.342 Sum_probs=253.1
Q ss_pred ccCCCcceEEecCCC------CCCcCCccccCCC-CCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhcc
Q 046017 16 IERPCSCGLRLKNCS------SLESFPSSLCVLK-SLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQ 88 (443)
Q Consensus 16 ~~~~~L~~L~ls~~~------~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~ 88 (443)
..+++|+.|.+..+. ....+|..+..++ +|+.|.+.++. ...+|..+ .+.+|+.|+++++.+..+|..+..
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~ 632 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS 632 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence 467889999887653 1225666676654 69999999876 46788777 678999999999999999998999
Q ss_pred CCCCcEEecCCCC---------CCCCccEEEEeCCC-CcccCccccCCCCCCEEeccCCCCC-------CCCCcCEEEcc
Q 046017 89 LALLSELELKNSS---------EFEYLRVLRVEGAA-IRELPESIGKSTLLSELELKNCSEL-------KLKSLRRIKMS 151 (443)
Q Consensus 89 l~~L~~L~ls~~~---------~l~~L~~L~l~~n~-~~~lp~~l~~l~~L~~L~l~~n~~~-------~l~~L~~L~l~ 151 (443)
+++|+.|+++++. .+++|+.|++++|. +..+|..+..+++|+.|++++|..+ ++++|++|+++
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Ls 712 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLS 712 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCC
Confidence 9999999998864 45889999999987 8899999999999999999998655 67899999999
Q ss_pred CCCCCCCCCCC-CCCccccc--cCcccccccccccCCCCCcccCCcccCCcccceeecccccccc-------cccccccC
Q 046017 152 KCSNLKRFPKI-ASCNKVGI--TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLE-------RLPESLGQ 221 (443)
Q Consensus 152 ~~~~l~~~~~~-~~l~~L~l--~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~-------~~p~~l~~ 221 (443)
+|..++.+|.. .+++.|++ +.+..+ |..+ .+++|++|.+.++.... ..+.....
T Consensus 713 gc~~L~~~p~~~~nL~~L~L~~n~i~~l---------------P~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 713 GCSRLKSFPDISTNISWLDLDETAIEEF---------------PSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCccccccccCCcCeeecCCCccccc---------------cccc-cccccccccccccchhhccccccccchhhhhc
Confidence 99999888877 77887777 444444 4332 34556666665432111 01111222
Q ss_pred CCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCC-CCcccChhccCCCCCCEEE
Q 046017 222 LALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT-AIREVPESLGYLSSLAKLE 300 (443)
Q Consensus 222 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~ 300 (443)
.++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++| .+..+|.. .++|+.|+
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~ 852 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLN 852 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeE
Confidence 3567777777766666677777777777777777766666666554 5667777777776 44455532 34677777
Q ss_pred ccCCCCCCCChhhhCCCCCCeeeCCC-CCCCccCcccccCCCCCcccccccccccC-CCCcccCChh-----h-------
Q 046017 301 LSNNNLKRTPESLYQLSSLKYLKPFE-NNSDRIPEYLRSSPTSIPSELRSLNLSVD-SGNSLNLDLN-----K------- 366 (443)
Q Consensus 301 ls~n~l~~lp~~l~~l~~L~~L~ls~-n~l~~lp~~~~~~~~~lp~~L~~L~l~~N-~l~~l~~~~~-----~------- 366 (443)
+++|.++.+|.++..+++|+.|++++ ++++.+|..+..+ ++|+.+++++| .+..++..-. .
T Consensus 853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L-----~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~ 927 (1153)
T PLN03210 853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL-----KHLETVDFSDCGALTEASWNGSPSEVAMATDNIHS 927 (1153)
T ss_pred CCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc-----cCCCeeecCCCcccccccCCCCchhhhhhcccccc
Confidence 77777777776677777777777776 6666666655443 56666666665 2332221100 0
Q ss_pred ----hhhHHHhcccccc----cccccceeEEEecCCCCCcccccCcCCccce-eecc
Q 046017 367 ----LSEIVKEGWMKQS----FHGQSWIKSMYFPGNEIPKWFRHQTFPVSDC-FRHE 414 (443)
Q Consensus 367 ----l~~l~~~~~~~~~----~~~~~~~~~~~l~g~~ip~w~~~~~~~~s~~-~~~~ 414 (443)
...+...+|.... .+.......+.++|.++|+||.|++.|.+.. +...
T Consensus 928 ~~p~~~~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~ 984 (1153)
T PLN03210 928 KLPSTVCINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPLL 984 (1153)
T ss_pred cCCchhccccccccCCCchhhhcccccceEEECCCccCchhccCCcccceeeeeccC
Confidence 0001111222211 1111223667899999999999999999996 7764
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=4.7e-33 Score=264.04 Aligned_cols=375 Identities=18% Similarity=0.181 Sum_probs=284.3
Q ss_pred cCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhcc
Q 046017 10 IDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQ 88 (443)
Q Consensus 10 ~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~ 88 (443)
|......-.+..+.||+++|.+...-+..|.++++|+.+++..|. ...+|...+...+|+.|+|.+|.|..+. +.+..
T Consensus 69 ~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~ 147 (873)
T KOG4194|consen 69 KSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSA 147 (873)
T ss_pred ccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEEeeeccccccccHHHHHh
Confidence 333344455678889999998666556668899999999998876 5678876666677999999999998766 67888
Q ss_pred CCCCcEEecCCCC----------CCCCccEEEEeCCCCcccC-ccccCCCCCCEEeccCCCCC--------CCCCcCEEE
Q 046017 89 LALLSELELKNSS----------EFEYLRVLRVEGAAIRELP-ESIGKSTLLSELELKNCSEL--------KLKSLRRIK 149 (443)
Q Consensus 89 l~~L~~L~ls~~~----------~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~ 149 (443)
++.|+.||||.|. .-.++++|+|++|.++.+- ..|..+.+|..|.|++|++. ++++|+.|+
T Consensus 148 l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 148 LPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred HhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 8999999998862 3367999999999988874 34677888999999999876 588888888
Q ss_pred ccCCCCCCCCCCC-----CCCccccc--cCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCC
Q 046017 150 MSKCSNLKRFPKI-----ASCNKVGI--TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQL 222 (443)
Q Consensus 150 l~~~~~l~~~~~~-----~~l~~L~l--~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l 222 (443)
+..| .++.+... .+++.|.+ |++..+.. ..|..+.++++|+|+.|++...--.++.++
T Consensus 228 LnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~D--------------G~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 228 LNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDD--------------GAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred cccc-ceeeehhhhhcCchhhhhhhhhhcCcccccC--------------cceeeecccceeecccchhhhhhccccccc
Confidence 8874 44433221 45555555 55554433 236678899999999988887777888899
Q ss_pred CCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEc
Q 046017 223 ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLEL 301 (443)
Q Consensus 223 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l 301 (443)
+.|+.|++|+|.+...-++.+...++|++|+|++|++...-+..+..+..|++|.|+.|.++.+. ..|..+++|++|||
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 99999999999887777788888899999999999997766778888999999999999999775 45778899999999
Q ss_pred cCCCCCC-C---ChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcc-cCChhh--hhhHHH--
Q 046017 302 SNNNLKR-T---PESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL-NLDLNK--LSEIVK-- 372 (443)
Q Consensus 302 s~n~l~~-l---p~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l-~~~~~~--l~~l~~-- 372 (443)
++|.+.. + ...+.++++|+.|++.+|+|+.||...+.. + .+|++|||.+|.+.++ |..|.+ +.+++.
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsg---l-~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSG---L-EALEHLDLGDNAIASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhcc---C-cccceecCCCCcceeecccccccchhhhhhhcc
Confidence 9999882 2 346788999999999999999999654432 3 5899999999988887 444543 333322
Q ss_pred --------hcccccccccccceeEEEecCCCCCcccccCcC
Q 046017 373 --------EGWMKQSFHGQSWIKSMYFPGNEIPKWFRHQTF 405 (443)
Q Consensus 373 --------~~~~~~~~~~~~~~~~~~l~g~~ip~w~~~~~~ 405 (443)
..|+.+....+.. +......+..|+|+..|..
T Consensus 449 ssflCDCql~Wl~qWl~~~~l-q~sv~a~CayPe~Lad~~i 488 (873)
T KOG4194|consen 449 SSFLCDCQLKWLAQWLYRRKL-QSSVIAKCAYPEPLADQSI 488 (873)
T ss_pred cceEEeccHHHHHHHHHhccc-ccceeeeccCCccccccee
Confidence 2344443333332 3444455577999887754
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.2e-32 Score=260.26 Aligned_cols=310 Identities=23% Similarity=0.271 Sum_probs=225.3
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEecccccccc-ccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFE-RLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE 96 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ 96 (443)
+.+|++|.+++|++ ..+...++.++.||.+++++|++.. .+|..+.++..|.+|||++|+++++|..+...+++-+|+
T Consensus 54 lqkLEHLs~~HN~L-~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQL-ISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred Hhhhhhhhhhhhhh-HhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 34455555555542 2222234455555555555554432 455566666666666666666666666666666666666
Q ss_pred cCCCC----------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCCCC
Q 046017 97 LKNSS----------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLKR 158 (443)
Q Consensus 97 ls~~~----------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l~~ 158 (443)
+|+|. ++..|-.|++++|.+..+|+.+..+..|++|+|++|+.. .+++|++|.+++.
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~T----- 207 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNT----- 207 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccc-----
Confidence 66653 445566666666666666666666666666666666543 3333444444442
Q ss_pred CCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCC
Q 046017 159 FPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES 238 (443)
Q Consensus 159 ~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~ 238 (443)
...+..+|.++..+.+|..+++|.|+ +..+|+.+.++++|+.|+||+|.++ +
T Consensus 208 --------------------------qRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~it-e 259 (1255)
T KOG0444|consen 208 --------------------------QRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKIT-E 259 (1255)
T ss_pred --------------------------cchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCcee-e
Confidence 23345788889999999999999865 4568899999999999999998765 4
Q ss_pred CCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCc--ccChhccCCCCCCEEEccCCCCCCCChhhhCC
Q 046017 239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR--EVPESLGYLSSLAKLELSNNNLKRTPESLYQL 316 (443)
Q Consensus 239 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l 316 (443)
+....+...+|++|+++.|++ ..+|..+..++.|+.|.+.+|+++ .+|..++.+.+|+++..++|.+.-+|+.+..|
T Consensus 260 L~~~~~~W~~lEtLNlSrNQL-t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC 338 (1255)
T KOG0444|consen 260 LNMTEGEWENLETLNLSRNQL-TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRC 338 (1255)
T ss_pred eeccHHHHhhhhhhccccchh-ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhh
Confidence 445667788999999999988 679999999999999999999776 89999999999999999999999999999999
Q ss_pred CCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCChhhh
Q 046017 317 SSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKL 367 (443)
Q Consensus 317 ~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l 367 (443)
..|+.|.|+.|++-.+|+.+--+ +.|+.||+..|.--..|...+.-
T Consensus 339 ~kL~kL~L~~NrLiTLPeaIHlL-----~~l~vLDlreNpnLVMPPKP~da 384 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLITLPEAIHLL-----PDLKVLDLRENPNLVMPPKPNDA 384 (1255)
T ss_pred HHHHHhcccccceeechhhhhhc-----CCcceeeccCCcCccCCCCcchh
Confidence 99999999999999999987654 78999999999766666665543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=7.5e-32 Score=257.72 Aligned_cols=331 Identities=21% Similarity=0.307 Sum_probs=212.7
Q ss_pred cCCCcceEEecCCCCCC-cCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEE
Q 046017 17 ERPCSCGLRLKNCSSLE-SFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSEL 95 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L 95 (443)
.++-++-+|+++|.+.| .+|..+..|+.++.|.|.... ...+|+.++.+.+|++|.+++|++..+-..+..++.|+.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHH
Confidence 35678889999999885 788888999999999997743 5688999999999999999999999888888888888888
Q ss_pred ecCCCC-----------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCC
Q 046017 96 ELKNSS-----------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNL 156 (443)
Q Consensus 96 ~ls~~~-----------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l 156 (443)
++.+|. .+..|+.|+++.|+++++|..+...+++-.|+|++|.+- ++..|-.||+|+ +.+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrL 162 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRL 162 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chh
Confidence 777653 345666666666766667666666666666666666543 444555555555 344
Q ss_pred CCCCCC----CCCccccc--cCcccccccccccCCCCCcccCCcccCCcccceeeccccccc-ccccccccCCCCcceee
Q 046017 157 KRFPKI----ASCNKVGI--TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKL-ERLPESLGQLALLCELK 229 (443)
Q Consensus 157 ~~~~~~----~~l~~L~l--~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~-~~~p~~l~~l~~L~~L~ 229 (443)
..+|.. ..++.|.+ |.+.. -.+..+ ..+++|+.|.+++.+.+ ..+|.++..+.+|..+|
T Consensus 163 e~LPPQ~RRL~~LqtL~Ls~NPL~h----------fQLrQL----PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 163 EMLPPQIRRLSMLQTLKLSNNPLNH----------FQLRQL----PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred hhcCHHHHHHhhhhhhhcCCChhhH----------HHHhcC----ccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 444433 22222332 11100 011122 23455555555554332 34566666666666666
Q ss_pred ccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCC--
Q 046017 230 MIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLK-- 307 (443)
Q Consensus 230 ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~-- 307 (443)
+|.|+ ...+|+.+.++++|+.|+|++|+++ .+....+...+|++|+++.|+++.+|..+..++.|+.|.+.+|+++
T Consensus 229 lS~N~-Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~Fe 306 (1255)
T KOG0444|consen 229 LSENN-LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFE 306 (1255)
T ss_pred ccccC-CCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCccccc
Confidence 66644 3455666666666666666666663 3444445556666666666666666666666666666666666655
Q ss_pred CCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCChhhhhhH
Q 046017 308 RTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEI 370 (443)
Q Consensus 308 ~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l~~l 370 (443)
++|..++.+.+|+++..++|.++-+|+.+... ..|+.|.++.|.+-.+|..+.-++.+
T Consensus 307 GiPSGIGKL~~Levf~aanN~LElVPEglcRC-----~kL~kL~L~~NrLiTLPeaIHlL~~l 364 (1255)
T KOG0444|consen 307 GIPSGIGKLIQLEVFHAANNKLELVPEGLCRC-----VKLQKLKLDHNRLITLPEAIHLLPDL 364 (1255)
T ss_pred CCccchhhhhhhHHHHhhccccccCchhhhhh-----HHHHHhcccccceeechhhhhhcCCc
Confidence 66666666666666666666666666666554 56666666666666666665545544
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=2.2e-30 Score=245.97 Aligned_cols=334 Identities=19% Similarity=0.170 Sum_probs=256.3
Q ss_pred CcceEEecCCCCCCcCC-ccccCC--CCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017 20 CSCGLRLKNCSSLESFP-SSLCVL--KSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE 96 (443)
Q Consensus 20 ~L~~L~ls~~~~~~~~p-~~~~~l--~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ 96 (443)
+-+.||.++..+ ..+. ..+..+ +.-+.|++++|.+...-+..|.++++|+.+++.+|.++.+|.......+|+.|+
T Consensus 53 ~~~lldcs~~~l-ea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDREL-EAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCcccc-ccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEe
Confidence 445567776652 2211 112221 245779999999877777889999999999999999999998777777899999
Q ss_pred cCCCC----------CCCCccEEEEeCCCCcccCcc-ccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCCC
Q 046017 97 LKNSS----------EFEYLRVLRVEGAAIRELPES-IGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLK 157 (443)
Q Consensus 97 ls~~~----------~l~~L~~L~l~~n~~~~lp~~-l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l~ 157 (443)
|.+|- .++.|+.|||+.|.++++|.. +-.-.++++|+|++|++. .+.+|.+|.++. +.++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-Nrit 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRIT 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-Cccc
Confidence 99872 569999999999999999754 444578999999999887 777999999999 5777
Q ss_pred CCCCC-----CCCccccc--cCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeec
Q 046017 158 RFPKI-----ASCNKVGI--TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKM 230 (443)
Q Consensus 158 ~~~~~-----~~l~~L~l--~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l 230 (443)
.+|.. ..++.|++ |.|..+. --.|..+++|+.|.+..|.+...-...|..+.++++|+|
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive--------------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVE--------------GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeeh--------------hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 77765 34555666 4443110 123678888999999988877666677888999999999
Q ss_pred cCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCC
Q 046017 231 IKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRT 309 (443)
Q Consensus 231 s~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~l 309 (443)
+.|.+...-..++.++++|+.|++++|.+...-++.+...++|++|+|++|+|+.++ ..+..+..|++|.|++|+++.+
T Consensus 277 ~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l 356 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL 356 (873)
T ss_pred ccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence 998887766678888999999999999998888888888899999999999999876 4577788999999999999987
Q ss_pred C-hhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccC-ChhhhhhH
Q 046017 310 P-ESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNL-DLNKLSEI 370 (443)
Q Consensus 310 p-~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~-~~~~l~~l 370 (443)
. ..|..+++|++|||++|.|...-++-...-.++ ++|+.|++.+|++.++|. .|..+..+
T Consensus 357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl-~~LrkL~l~gNqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL-PSLRKLRLTGNQLKSIPKRAFSGLEAL 418 (873)
T ss_pred HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc-hhhhheeecCceeeecchhhhccCccc
Confidence 6 468889999999999999843322211111112 689999999999988853 33334444
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=1.7e-31 Score=243.29 Aligned_cols=163 Identities=25% Similarity=0.410 Sum_probs=109.3
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE 96 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ 96 (443)
.+..+++|++.+|. ...+|++++.+..++.+++++|+ ...+|++++.+..|+.+++++|.+.++|+.++.+..|+.++
T Consensus 66 nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 66 NLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred cccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 45566777777766 45666667777777777777665 34566666666666666666666666666665555555555
Q ss_pred cCCCC--------------------------------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC----
Q 046017 97 LKNSS--------------------------------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL---- 140 (443)
Q Consensus 97 ls~~~--------------------------------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~---- 140 (443)
..+|. +++.|++|+...|-++.+|..++.+.+|+.|++++|++.
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe 223 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE 223 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC
Confidence 54441 236677777777777778877777888877777777654
Q ss_pred --------------------------CCCCcCEEEccCCCCCCCCCCC----CCCccccc--cCcccccccccc
Q 046017 141 --------------------------KLKSLRRIKMSKCSNLKRFPKI----ASCNKVGI--TGIKRLSSTLRL 182 (443)
Q Consensus 141 --------------------------~l~~L~~L~l~~~~~l~~~~~~----~~l~~L~l--~~l~~l~~~l~~ 182 (443)
.++++.+||+.+ +.++++|+. .++..|++ |.++.+|..++.
T Consensus 224 f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgn 296 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGN 296 (565)
T ss_pred CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCCccccCCccccc
Confidence 677788888888 578888877 55666777 666666655443
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=2.2e-31 Score=242.55 Aligned_cols=368 Identities=25% Similarity=0.295 Sum_probs=264.0
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEec
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELEL 97 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l 97 (443)
-..++.+++++|. ...+.+.+.++..|.+|++++|. ...+|++++.+..++.++.++|++..+|+.++++.+|+.+++
T Consensus 44 qv~l~~lils~N~-l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 44 QVDLQKLILSHND-LEVLREDLKNLACLTVLNVHDNK-LSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred hcchhhhhhccCc-hhhccHhhhcccceeEEEeccch-hhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 3578899999998 44555558899999999999987 457888999999999999999999999999999999999999
Q ss_pred CCCC---------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC-------CCCCcCEEEccCCCCCCCCCC
Q 046017 98 KNSS---------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL-------KLKSLRRIKMSKCSNLKRFPK 161 (443)
Q Consensus 98 s~~~---------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~-------~l~~L~~L~l~~~~~l~~~~~ 161 (443)
+++. .+..|..++..+|++.++|+++.++.+|..+++.+|+.. .++.|++||... +.++.+|.
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~ 200 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPP 200 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCCh
Confidence 9874 457888899999999999999999999999999999766 778889999887 58888888
Q ss_pred C-CCCcccc---c--cCccccccccccc-------CCCCCcccCCccc-CCcccceeecccccccccccccccCCCCcce
Q 046017 162 I-ASCNKVG---I--TGIKRLSSTLRLK-------NCSSLESLPSSLC-MLKSLRFLETIACKKLERLPESLGQLALLCE 227 (443)
Q Consensus 162 ~-~~l~~L~---l--~~l~~l~~~l~~~-------~~~~l~~lp~~~~-~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~ 227 (443)
. +.+.+|+ + |.+..+|..=+.. +.+.++.+|+... ++.++..||+.+|+ ....|+.+..+.+|++
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLER 279 (565)
T ss_pred hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhh
Confidence 8 7777644 3 7777777321100 2334445555543 67777778887744 4556777777777888
Q ss_pred eeccCccCCCCCCchhhcCCCCCcEecccccccc-------------------------------------cCCCC-C--
Q 046017 228 LKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFK-------------------------------------RLPNE-L-- 267 (443)
Q Consensus 228 L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-------------------------------------~~~~~-l-- 267 (443)
||+|+|.++ .+|..++++ .|+.|.+.||.+.+ ..+.+ +
T Consensus 280 LDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~ 357 (565)
T KOG0472|consen 280 LDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD 357 (565)
T ss_pred hcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence 888776544 456677777 77777777776511 00000 0
Q ss_pred -CCCCC--------------------------CceEEecCCCCc------------------------ccChhccCCCCC
Q 046017 268 -GNLKC--------------------------LAALIVKGTAIR------------------------EVPESLGYLSSL 296 (443)
Q Consensus 268 -~~l~~--------------------------L~~L~l~~n~l~------------------------~lp~~~~~l~~L 296 (443)
..+.+ ....++++|++. .+|..+..+++|
T Consensus 358 ~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kL 437 (565)
T KOG0472|consen 358 IYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKL 437 (565)
T ss_pred hhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcc
Confidence 00011 122333333333 333345677888
Q ss_pred CEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCC-hhhhhhHHHhcc
Q 046017 297 AKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLD-LNKLSEIVKEGW 375 (443)
Q Consensus 297 ~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~-~~~l~~l~~~~~ 375 (443)
..|++++|-+..+|..++.+-.|+.|+++.|++..+|..+... ..++.+-.++|+++.+|.+ +.++..+...+.
T Consensus 438 t~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~l-----q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL 512 (565)
T KOG0472|consen 438 TFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYEL-----QTLETLLASNNQIGSVDPSGLKNMRNLTTLDL 512 (565)
T ss_pred eeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhH-----HHHHHHHhccccccccChHHhhhhhhcceecc
Confidence 8888888888888888888888888888888888888876543 5666666677777777655 666666666666
Q ss_pred ccccccccc-------ceeEEEecCCCC
Q 046017 376 MKQSFHGQS-------WIKSMYFPGNEI 396 (443)
Q Consensus 376 ~~~~~~~~~-------~~~~~~l~g~~i 396 (443)
.++..+..+ .++++.+.||++
T Consensus 513 ~nNdlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 513 QNNDLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred CCCchhhCChhhccccceeEEEecCCcc
Confidence 666555432 246667777754
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=5.7e-28 Score=240.83 Aligned_cols=327 Identities=22% Similarity=0.239 Sum_probs=173.7
Q ss_pred CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCC
Q 046017 20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKN 99 (443)
Q Consensus 20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~ 99 (443)
+|++||+++|. ...+|..+..+.+|+.|+++.|. ...+|.+.+++.+|+++.|.+|.++.+|..+..+.+|++|++++
T Consensus 46 ~L~~l~lsnn~-~~~fp~~it~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQ-ISSFPIQITLLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccc-cccCCchhhhHHHHhhcccchhh-HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch
Confidence 48888888887 67788778888888888888765 56677778888888888888888888888888888888888887
Q ss_pred CCC---------C-------------------CCccEEEEeCCC-CcccCccccCCCCCCEEeccCCCCC----------
Q 046017 100 SSE---------F-------------------EYLRVLRVEGAA-IRELPESIGKSTLLSELELKNCSEL---------- 140 (443)
Q Consensus 100 ~~~---------l-------------------~~L~~L~l~~n~-~~~lp~~l~~l~~L~~L~l~~n~~~---------- 140 (443)
|.. + ...+.+++..|. -+.++.++..++. .|++++|.+.
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l 201 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANL 201 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccch
Confidence 620 1 112233333333 1123333333333 3444444332
Q ss_pred ---------------CCCCcCEEEccCCCCCCCCCCC--CCCccccc--cCccccccccccc--------CCCCCcccCC
Q 046017 141 ---------------KLKSLRRIKMSKCSNLKRFPKI--ASCNKVGI--TGIKRLSSTLRLK--------NCSSLESLPS 193 (443)
Q Consensus 141 ---------------~l~~L~~L~l~~~~~l~~~~~~--~~l~~L~l--~~l~~l~~~l~~~--------~~~~l~~lp~ 193 (443)
.-++|+.|+.++|...+..+.. .+++.+++ +.+..+|.++... +.+.+..+|.
T Consensus 202 ~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ 281 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPL 281 (1081)
T ss_pred hhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHH
Confidence 3445555555555444333333 44555555 4444444333222 2233344444
Q ss_pred cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhc--------------------------CC
Q 046017 194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCM--------------------------LK 247 (443)
Q Consensus 194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~--------------------------l~ 247 (443)
.+...++|+.|.+..|. ...+|....++++|++|++..|.+. .+|+.+.. ++
T Consensus 282 ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~ 359 (1081)
T KOG0618|consen 282 RISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHA 359 (1081)
T ss_pred HHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhH
Confidence 44445555555555433 2344555555666666666665432 23322111 12
Q ss_pred CCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCC
Q 046017 248 SLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFE 326 (443)
Q Consensus 248 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~ 326 (443)
.|+.|++.+|.+....-+.+.++.+|++|++++|.+.++|+. +.++..|++|++|||+++.+|..+..+..|++|...+
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC
Confidence 333444444444333333344445555555555555544432 3344455555555555555555555555555555555
Q ss_pred CCCCccCcccccCCCCCcccccccccccCCCC
Q 046017 327 NNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 327 n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
|++...| .+..+ +.|+.+|++.|.++
T Consensus 440 N~l~~fP-e~~~l-----~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 440 NQLLSFP-ELAQL-----PQLKVLDLSCNNLS 465 (1081)
T ss_pred Cceeech-hhhhc-----CcceEEecccchhh
Confidence 5555555 22222 35555555555443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3.1e-23 Score=227.42 Aligned_cols=296 Identities=25% Similarity=0.382 Sum_probs=237.1
Q ss_pred CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecC-chhhhhhhhccCCCCcEEec
Q 046017 19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGA-AIRELSQSLGQLALLSELEL 97 (443)
Q Consensus 19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n-~l~~lp~~~~~l~~L~~L~l 97 (443)
++|+.|++.++. .+.+|..+ ...+|+.|++.+|. ...++..+..+++|++|+++++ .++.+|. +..+++|++|++
T Consensus 589 ~~Lr~L~~~~~~-l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYP-LRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCC-CCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 469999999887 67888766 57899999999877 4567888888999999999885 4667774 778899999999
Q ss_pred CCCC----------CCCCccEEEEeCCC-CcccCccccCCCCCCEEeccCCCCC-----CCCCcCEEEccCCCCCCCCCC
Q 046017 98 KNSS----------EFEYLRVLRVEGAA-IRELPESIGKSTLLSELELKNCSEL-----KLKSLRRIKMSKCSNLKRFPK 161 (443)
Q Consensus 98 s~~~----------~l~~L~~L~l~~n~-~~~lp~~l~~l~~L~~L~l~~n~~~-----~l~~L~~L~l~~~~~l~~~~~ 161 (443)
++|. .+++|+.|++++|. ++.+|..+ ++++|+.|++++|..+ ...+|++|+++++ .++.+|.
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n-~i~~lP~ 742 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET-AIEEFPS 742 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCC-ccccccc
Confidence 9874 45889999999876 88899866 7999999999999765 4568999999985 5777886
Q ss_pred C---CCCccccccCcc--cccccccccCCCCCccc-CCcccCCcccceeecccccccccccccccCCCCcceeeccCccC
Q 046017 162 I---ASCNKVGITGIK--RLSSTLRLKNCSSLESL-PSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSS 235 (443)
Q Consensus 162 ~---~~l~~L~l~~l~--~l~~~l~~~~~~~l~~l-p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~ 235 (443)
. .++..|.+..+. .++. ....+ +......++|+.|++++|...+.+|..++++++|+.|++++|..
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~--------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWE--------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred cccccccccccccccchhhccc--------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 5 445555552211 1110 00111 11123457899999999999999999999999999999999988
Q ss_pred CCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccC-CCCCCCChhhh
Q 046017 236 FESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSN-NNLKRTPESLY 314 (443)
Q Consensus 236 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~-n~l~~lp~~l~ 314 (443)
.+.+|..+ .+++|+.|++++|.....+|.. .++|++|++++|.++.+|.++..+++|+.|++++ +++..+|..+.
T Consensus 815 L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~ 890 (1153)
T PLN03210 815 LETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890 (1153)
T ss_pred cCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence 88888776 7899999999999887777653 4689999999999999999999999999999999 67889998889
Q ss_pred CCCCCCeeeCCC-CCCCcc
Q 046017 315 QLSSLKYLKPFE-NNSDRI 332 (443)
Q Consensus 315 ~l~~L~~L~ls~-n~l~~l 332 (443)
.+++|+.+++++ ..++.+
T Consensus 891 ~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 891 KLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cccCCCeeecCCCcccccc
Confidence 999999999998 445544
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-26 Score=231.63 Aligned_cols=328 Identities=23% Similarity=0.274 Sum_probs=250.2
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE 96 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ 96 (443)
.+.+|+.|+++.|. +..+|.+..++.+|++|.|.+|. ...+|..+..+.+|++|++++|.+..+|..+..++.++.++
T Consensus 66 ~l~~L~~ln~s~n~-i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~ 143 (1081)
T KOG0618|consen 66 LLSHLRQLNLSRNY-IRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELA 143 (1081)
T ss_pred hHHHHhhcccchhh-HhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHh
Confidence 45688999999876 67888888899999999998754 67888889999999999999998888877776666666665
Q ss_pred cCCC--------------------------CCCCCccE-EEEeCCCCcccCc------------------cccCCCCCCE
Q 046017 97 LKNS--------------------------SEFEYLRV-LRVEGAAIRELPE------------------SIGKSTLLSE 131 (443)
Q Consensus 97 ls~~--------------------------~~l~~L~~-L~l~~n~~~~lp~------------------~l~~l~~L~~ 131 (443)
.++| .....++. |++++|.++.+.- ..-.-++|+.
T Consensus 144 ~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~ 223 (1081)
T KOG0618|consen 144 ASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTA 223 (1081)
T ss_pred hhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchhe
Confidence 5544 01133333 6777776541110 0012356677
Q ss_pred EeccCCCCC------CCCCcCEEEccCCCCCCCCCCC----CCCccccc--cCccccccccccc--------CCCCCccc
Q 046017 132 LELKNCSEL------KLKSLRRIKMSKCSNLKRFPKI----ASCNKVGI--TGIKRLSSTLRLK--------NCSSLESL 191 (443)
Q Consensus 132 L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~~~----~~l~~L~l--~~l~~l~~~l~~~--------~~~~l~~l 191 (443)
|+.++|... ...+|+++++++ +.++.+|++ .+++.++. |.+..+|..+... ..+.+..+
T Consensus 224 L~a~~n~l~~~~~~p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yi 302 (1081)
T KOG0618|consen 224 LYADHNPLTTLDVHPVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYI 302 (1081)
T ss_pred eeeccCcceeeccccccccceeeecch-hhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhC
Confidence 777777655 567889999999 577788866 44555555 7777777654433 33567788
Q ss_pred CCcccCCcccceeecccccccccccccc--------------------------cCCCCcceeeccCccCCCCCCchhhc
Q 046017 192 PSSLCMLKSLRFLETIACKKLERLPESL--------------------------GQLALLCELKMIKCSSFESLPSSLCM 245 (443)
Q Consensus 192 p~~~~~l~~L~~L~ls~n~~~~~~p~~l--------------------------~~l~~L~~L~ls~n~~~~~~p~~~~~ 245 (443)
|.....+++|++|++..|++. .+|+.+ ..++.|+.|++.+|.+....-+.+..
T Consensus 303 p~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 303 PPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred CCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 988888999999999997653 333211 12356788888888887776677889
Q ss_pred CCCCCcEecccccccccCCC-CCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeC
Q 046017 246 LKSLTPLAIIDCKIFKRLPN-ELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKP 324 (443)
Q Consensus 246 l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~l 324 (443)
++.|+.|+|++|++ +.+|+ .+.+++.|++|+++||+++.+|..+..+..|++|...+|++..+| .+..++.|+.+|+
T Consensus 382 ~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred ccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEec
Confidence 99999999999998 55665 578899999999999999999999999999999999999999999 6999999999999
Q ss_pred CCCCCCcc--CcccccCCCCCc-ccccccccccCCC
Q 046017 325 FENNSDRI--PEYLRSSPTSIP-SELRSLNLSVDSG 357 (443)
Q Consensus 325 s~n~l~~l--p~~~~~~~~~lp-~~L~~L~l~~N~l 357 (443)
+.|+|+.+ |.. .| +.|++||+++|.-
T Consensus 460 S~N~L~~~~l~~~-------~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 460 SCNNLSEVTLPEA-------LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ccchhhhhhhhhh-------CCCcccceeeccCCcc
Confidence 99999654 332 56 8999999999953
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.7e-21 Score=197.54 Aligned_cols=252 Identities=25% Similarity=0.243 Sum_probs=140.4
Q ss_pred CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecC
Q 046017 19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELK 98 (443)
Q Consensus 19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls 98 (443)
..-..|+++++. ++.+|..+. ++|+.|++.+|.+. .+|. .+++|++|++++|.++.+|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 346688999987 457887665 48999999998754 4665 357899999999999988853 3456666666
Q ss_pred CCC------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccC
Q 046017 99 NSS------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITG 172 (443)
Q Consensus 99 ~~~------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~ 172 (443)
+|. ...+|+.|++++|+++.+|.. .++|+.|++++| .++.+|..
T Consensus 271 ~N~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-----------------~L~~Lp~l---------- 320 (788)
T PRK15387 271 SNPLTHLPALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-----------------QLASLPAL---------- 320 (788)
T ss_pred CCchhhhhhchhhcCEEECcCCcccccccc---ccccceeECCCC-----------------ccccCCCC----------
Confidence 542 113445555555555555431 234444444443 33333321
Q ss_pred cccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcE
Q 046017 173 IKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPL 252 (443)
Q Consensus 173 l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L 252 (443)
..+|+.|++++|.+. .+|.. ..+|+.|++++|.+. .+|.. .++|+.|
T Consensus 321 -------------------------p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L 367 (788)
T PRK15387 321 -------------------------PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKL 367 (788)
T ss_pred -------------------------cccccccccccCccc-ccccc---ccccceEecCCCccC-CCCCC---Cccccee
Confidence 113445555554433 23321 134556666655443 23322 2345555
Q ss_pred ecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCcc
Q 046017 253 AIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRI 332 (443)
Q Consensus 253 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~l 332 (443)
++++|.+. .+|.. ..+|+.|++++|.|+.+|.. .++|+.|++++|+++++|.. ..+|+.|++++|+|+.+
T Consensus 368 ~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~L 437 (788)
T PRK15387 368 WAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRL 437 (788)
T ss_pred hhhccccc-cCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccccc
Confidence 56655553 34432 23456666666666655542 24566666666666665542 23455566666666666
Q ss_pred CcccccCCCCCcccccccccccCCCC
Q 046017 333 PEYLRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 333 p~~~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
|..+..+ ++|+.|++++|.++
T Consensus 438 P~sl~~L-----~~L~~LdLs~N~Ls 458 (788)
T PRK15387 438 PESLIHL-----SSETTVNLEGNPLS 458 (788)
T ss_pred ChHHhhc-----cCCCeEECCCCCCC
Confidence 6555543 45666666666544
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=4.7e-21 Score=196.72 Aligned_cols=253 Identities=24% Similarity=0.221 Sum_probs=182.2
Q ss_pred CCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccc
Q 046017 44 SLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESI 123 (443)
Q Consensus 44 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l 123 (443)
.-..|+++++.+. .+|..+. ++|+.|++.+|+++.+|.. .++|++|++++|+++.+|..
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~LP~l-----------------p~~Lk~LdLs~N~LtsLP~l- 260 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPAL-----------------PPELRTLEVSGNQLTSLPVL- 260 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCCCCC-----------------CCCCcEEEecCCccCcccCc-
Confidence 4567777777644 5776654 3678888888877777642 24566666667777777752
Q ss_pred cCCCCCCEEeccCCCCC----CCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCc
Q 046017 124 GKSTLLSELELKNCSEL----KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLK 199 (443)
Q Consensus 124 ~~l~~L~~L~l~~n~~~----~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~ 199 (443)
.++|+.|++++|.+. ...+|+.|++++| .++ .+|. ..+
T Consensus 261 --p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N-~Lt--------------------------------~LP~---~p~ 302 (788)
T PRK15387 261 --PPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-QLT--------------------------------SLPV---LPP 302 (788)
T ss_pred --ccccceeeccCCchhhhhhchhhcCEEECcCC-ccc--------------------------------cccc---ccc
Confidence 457777777777544 2234556666653 232 3333 235
Q ss_pred ccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEec
Q 046017 200 SLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVK 279 (443)
Q Consensus 200 ~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 279 (443)
+|+.|++++|.+.+ +|.. ...|+.|++++|.+. .+|.. ..+|++|++++|++. .+|.. .++|+.|+++
T Consensus 303 ~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls 370 (788)
T PRK15387 303 GLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---PSGLQELSVSDNQLA-SLPTL---PSELYKLWAY 370 (788)
T ss_pred ccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---ccccceEecCCCccC-CCCCC---Ccccceehhh
Confidence 79999999987664 5543 246888999998765 46642 358999999999985 46653 3578899999
Q ss_pred CCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCc
Q 046017 280 GTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNS 359 (443)
Q Consensus 280 ~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~ 359 (443)
+|+++.+|.. ..+|+.|++++|+++.+|.. .++|+.|++++|+++.+|. +|.+|+.|++++|.++.
T Consensus 371 ~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~--------l~~~L~~L~Ls~NqLt~ 436 (788)
T PRK15387 371 NNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRNQLTR 436 (788)
T ss_pred ccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc--------chhhhhhhhhccCcccc
Confidence 9999998864 36899999999999999864 3689999999999999987 45789999999999999
Q ss_pred ccCChhhhhhHHHhcccccccc
Q 046017 360 LNLDLNKLSEIVKEGWMKQSFH 381 (443)
Q Consensus 360 l~~~~~~l~~l~~~~~~~~~~~ 381 (443)
+|..+.++..+...+...+.+.
T Consensus 437 LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 437 LPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cChHHhhccCCCeEECCCCCCC
Confidence 9988877776644444444433
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=2.2e-20 Score=192.88 Aligned_cols=251 Identities=23% Similarity=0.315 Sum_probs=160.8
Q ss_pred CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecC
Q 046017 19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELK 98 (443)
Q Consensus 19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls 98 (443)
.+.+.|+++++. ++.+|..+. ++|+.|++++|.+. .+|..+. ++|++|++++|.++.+|..+.
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~----------- 240 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP----------- 240 (754)
T ss_pred cCceEEEeCCCC-cCcCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh-----------
Confidence 356778887776 456665443 46788888877654 5665543 478888888887777775442
Q ss_pred CCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccc
Q 046017 99 NSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSS 178 (443)
Q Consensus 99 ~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~ 178 (443)
..|+.|++++|.+..+|..+. .+|+.|++++| .++.+
T Consensus 241 -----~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-----------------~L~~L------------------- 277 (754)
T PRK15370 241 -----DTIQEMELSINRITELPERLP--SALQSLDLFHN-----------------KISCL------------------- 277 (754)
T ss_pred -----ccccEEECcCCccCcCChhHh--CCCCEEECcCC-----------------ccCcc-------------------
Confidence 134455555566677776543 35566665554 22222
Q ss_pred cccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccccc
Q 046017 179 TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCK 258 (443)
Q Consensus 179 ~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~ 258 (443)
|..+. ++|+.|++++|++. .+|..+. ++|+.|++++|.+.. +|..+ .++|+.|++++|.
T Consensus 278 -------------P~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~ 336 (754)
T PRK15370 278 -------------PENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENA 336 (754)
T ss_pred -------------ccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCc
Confidence 22222 36777888776554 3454332 467778888776653 45433 3578888888887
Q ss_pred ccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCccccc
Q 046017 259 IFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRS 338 (443)
Q Consensus 259 ~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~ 338 (443)
+.+ +|..+. ++|+.|++++|+++.+|..+. ++|+.|++++|+++.+|..+. ..|+.|++++|++..+|..+..
T Consensus 337 Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~ 409 (754)
T PRK15370 337 LTS-LPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPH 409 (754)
T ss_pred ccc-CChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHH
Confidence 743 665443 678888888888887776553 678888888888888887654 3688888888888888775543
Q ss_pred CCCCCcccccccccccCCCC
Q 046017 339 SPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 339 ~~~~lp~~L~~L~l~~N~l~ 358 (443)
+.... +.+..|++.+|.+.
T Consensus 410 ~~~~~-~~l~~L~L~~Npls 428 (754)
T PRK15370 410 FRGEG-PQPTRIIVEYNPFS 428 (754)
T ss_pred HhhcC-CCccEEEeeCCCcc
Confidence 31112 36778888888665
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=1.8e-19 Score=186.20 Aligned_cols=227 Identities=23% Similarity=0.312 Sum_probs=162.0
Q ss_pred cccEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCC-----C
Q 046017 68 TLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELK-----L 142 (443)
Q Consensus 68 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~-----l 142 (443)
+...|++++++++.+|..+. +.|+.|++++|.++.+|..+. ++|++|++++|.+.. .
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip----------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~ 240 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP----------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP 240 (754)
T ss_pred CceEEEeCCCCcCcCCcccc----------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh
Confidence 45677777777777765432 234444555566666665442 456666666653331 1
Q ss_pred CCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCC
Q 046017 143 KSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQL 222 (443)
Q Consensus 143 ~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l 222 (443)
.+|+.|++++| .+ ..+|..+. ++|+.|++++|++. .+|..+.
T Consensus 241 ~~L~~L~Ls~N-~L--------------------------------~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~-- 282 (754)
T PRK15370 241 DTIQEMELSIN-RI--------------------------------TELPERLP--SALQSLDLFHNKIS-CLPENLP-- 282 (754)
T ss_pred ccccEEECcCC-cc--------------------------------CcCChhHh--CCCCEEECcCCccC-ccccccC--
Confidence 23444555443 22 23343332 47999999987665 5777653
Q ss_pred CCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEcc
Q 046017 223 ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELS 302 (443)
Q Consensus 223 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls 302 (443)
++|+.|++++|.+. .+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.++.+|..+. ++|+.|+++
T Consensus 283 ~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls 354 (754)
T PRK15370 283 EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVS 354 (754)
T ss_pred CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCcccc--ccceeccccCCccccCChhhc--CcccEEECC
Confidence 58999999998765 4665442 57999999999885 4665443 689999999999999997653 799999999
Q ss_pred CCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCChhhh
Q 046017 303 NNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKL 367 (443)
Q Consensus 303 ~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l 367 (443)
+|+++.+|..+. ++|++|++++|+|+.+|.. +|.+|+.|++++|.++.+|.++..+
T Consensus 355 ~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~-------l~~sL~~LdLs~N~L~~LP~sl~~~ 410 (754)
T PRK15370 355 KNQITVLPETLP--PTITTLDVSRNALTNLPEN-------LPAALQIMQASRNNLVRLPESLPHF 410 (754)
T ss_pred CCCCCcCChhhc--CCcCEEECCCCcCCCCCHh-------HHHHHHHHhhccCCcccCchhHHHH
Confidence 999999997663 6999999999999999986 4468999999999999998876544
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=2e-20 Score=171.08 Aligned_cols=347 Identities=19% Similarity=0.159 Sum_probs=237.6
Q ss_pred CccCCCCCc---cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeec-Cchhhhh
Q 046017 8 CNIDGSTGI---ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEG-AAIRELS 83 (443)
Q Consensus 8 c~~~g~~~~---~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~-n~l~~lp 83 (443)
|+-.|.+.+ -.+..+.++|..|++...-|.+|+.+++||.|||++|.+...-|.+|..++.|..|-+.+ |+|+.+|
T Consensus 53 Cr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 53 CRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred ccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 444444432 235788899999995545557899999999999999998888899999999988877766 9999999
Q ss_pred -hhhccCCCCcEEecCCCC----------CCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCCCCCCcCEE---
Q 046017 84 -QSLGQLALLSELELKNSS----------EFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSELKLKSLRRI--- 148 (443)
Q Consensus 84 -~~~~~l~~L~~L~ls~~~----------~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~~l~~L~~L--- 148 (443)
..|+++..|+.|.+..|. .+++|..|.+.+|.+..++. .+..+..++++.+..|......+|+.+
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 689999999999987753 67999999999999999988 678899999999999976633333322
Q ss_pred EccCCCCCCCCCCCCCCccccccCcc------------cccccccccCCCCCcccC-CcccCCcccceeecccccccccc
Q 046017 149 KMSKCSNLKRFPKIASCNKVGITGIK------------RLSSTLRLKNCSSLESLP-SSLCMLKSLRFLETIACKKLERL 215 (443)
Q Consensus 149 ~l~~~~~l~~~~~~~~l~~L~l~~l~------------~l~~~l~~~~~~~l~~lp-~~~~~l~~L~~L~ls~n~~~~~~ 215 (443)
.........-+... .-..+.-..+. ++|..+.. .|......| ..|..+++|+.|++++|.+.+.-
T Consensus 213 ~a~~~ietsgarc~-~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~-~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~ 290 (498)
T KOG4237|consen 213 LAMNPIETSGARCV-SPYRLYYKRINQEDARKFLCSLESLPSRLSS-EDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE 290 (498)
T ss_pred Hhhchhhcccceec-chHHHHHHHhcccchhhhhhhHHhHHHhhcc-ccCcCCcChHHHHhhcccceEeccCCCccchhh
Confidence 11110000000000 00001111111 11111111 222222333 23788899999999999988888
Q ss_pred cccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCc------ccChh
Q 046017 216 PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR------EVPES 289 (443)
Q Consensus 216 p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~------~lp~~ 289 (443)
+.+|.+...+++|.|..|++...-...|..+..|+.|+|.+|+++...|..|..+..|.+|.+-.|-+. .+-+|
T Consensus 291 ~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 291 DGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW 370 (498)
T ss_pred hhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH
Confidence 889999999999999998876555567888999999999999998888888988999999988776432 22222
Q ss_pred c-----------cCCCCCCEEEccCCCCCCC----Chh---------hhCCCCCCe-eeCCCCCCCccCcccccCCCCCc
Q 046017 290 L-----------GYLSSLAKLELSNNNLKRT----PES---------LYQLSSLKY-LKPFENNSDRIPEYLRSSPTSIP 344 (443)
Q Consensus 290 ~-----------~~l~~L~~L~ls~n~l~~l----p~~---------l~~l~~L~~-L~ls~n~l~~lp~~~~~~~~~lp 344 (443)
+ .....++.+.+++..+... |+. -..++.+.+ ...|++.++.+|.. +|
T Consensus 371 lr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~-------iP 443 (498)
T KOG4237|consen 371 LRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRG-------IP 443 (498)
T ss_pred HhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCC-------CC
Confidence 2 1233567777777554422 221 123344433 34555666777764 66
Q ss_pred ccccccccccCCCCcccCC
Q 046017 345 SELRSLNLSVDSGNSLNLD 363 (443)
Q Consensus 345 ~~L~~L~l~~N~l~~l~~~ 363 (443)
..-.++++.+|.++.+|..
T Consensus 444 ~d~telyl~gn~~~~vp~~ 462 (498)
T KOG4237|consen 444 VDVTELYLDGNAITSVPDE 462 (498)
T ss_pred chhHHHhcccchhcccCHH
Confidence 7777888888888887766
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2.3e-19 Score=146.27 Aligned_cols=162 Identities=22% Similarity=0.328 Sum_probs=77.6
Q ss_pred CCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceE
Q 046017 197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL 276 (443)
Q Consensus 197 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 276 (443)
.+.+++.|.+++|++ ..+|..+..+.+|+.|++++|. ..++|..+..++.|+.|++.-|++ ..+|..|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhh-hcCccccCCCchhhhh
Confidence 344444444554332 2233444444555555554432 234444444555555555554444 3344445555555555
Q ss_pred EecCCCCc--ccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccccc
Q 046017 277 IVKGTAIR--EVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSV 354 (443)
Q Consensus 277 ~l~~n~l~--~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~ 354 (443)
|+.+|++. .+|..|..++.|+.|.+++|.+.-+|..++.+++|+.|.+.+|.+-++|..++.+ ..|++|.+.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~l-----t~lrelhiqg 182 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDL-----TRLRELHIQG 182 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHH-----HHHHHHhccc
Confidence 55555444 4444444444555555555555555544555555555555555555555544444 4455555555
Q ss_pred CCCCcccCChhh
Q 046017 355 DSGNSLNLDLNK 366 (443)
Q Consensus 355 N~l~~l~~~~~~ 366 (443)
|.++.+|..+.+
T Consensus 183 nrl~vlppel~~ 194 (264)
T KOG0617|consen 183 NRLTVLPPELAN 194 (264)
T ss_pred ceeeecChhhhh
Confidence 555555444443
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2.6e-19 Score=145.97 Aligned_cols=152 Identities=24% Similarity=0.348 Sum_probs=137.5
Q ss_pred CCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccc-cCC
Q 046017 186 SSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFK-RLP 264 (443)
Q Consensus 186 ~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~ 264 (443)
+++..+|+.+..+.+|+.|++++|+ .+.+|..++.++.|+.|++.-|. ...+|..|+.++.|+.||+++|++.+ .+|
T Consensus 43 NKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 43 NKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred CceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCC
Confidence 4556777889999999999998854 56789999999999999999865 45789999999999999999998865 578
Q ss_pred CCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccC
Q 046017 265 NELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSS 339 (443)
Q Consensus 265 ~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~ 339 (443)
..|..++.|+.|++++|.+.-+|+.++.+++|+.|.+.+|.+-++|..++.+++|++|.+.+|+++.+|+.++.+
T Consensus 121 gnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred cchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999877654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=4.6e-18 Score=162.39 Aligned_cols=162 Identities=25% Similarity=0.171 Sum_probs=98.6
Q ss_pred ccCC-cccceeecccccccc----cccccccCCCCcceeeccCccCCCC----CCchhhcCCCCCcEeccccccccc---
Q 046017 195 LCML-KSLRFLETIACKKLE----RLPESLGQLALLCELKMIKCSSFES----LPSSLCMLKSLTPLAIIDCKIFKR--- 262 (443)
Q Consensus 195 ~~~l-~~L~~L~ls~n~~~~----~~p~~l~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~--- 262 (443)
+..+ ++|++|++++|.+.+ .++..+..+++|++|++++|.+.+. ++..+...++|++|++++|.+.+.
T Consensus 132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 211 (319)
T cd00116 132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211 (319)
T ss_pred HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence 3344 567777777776652 2334455666777777777766532 233344556788888887776422
Q ss_pred -CCCCCCCCCCCceEEecCCCCcc--cC---hhc-cCCCCCCEEEccCCCCC-----CCChhhhCCCCCCeeeCCCCCCC
Q 046017 263 -LPNELGNLKCLAALIVKGTAIRE--VP---ESL-GYLSSLAKLELSNNNLK-----RTPESLYQLSSLKYLKPFENNSD 330 (443)
Q Consensus 263 -~~~~l~~l~~L~~L~l~~n~l~~--lp---~~~-~~l~~L~~L~ls~n~l~-----~lp~~l~~l~~L~~L~ls~n~l~ 330 (443)
+...+..+++|++|++++|.++. +. ..+ ...+.|+.|++++|.++ .+...+..+++|+++++++|.++
T Consensus 212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 23345567788888888887763 11 111 12468888888888886 23455667788888888888886
Q ss_pred ccCcccccCCCCCc-ccccccccccCC
Q 046017 331 RIPEYLRSSPTSIP-SELRSLNLSVDS 356 (443)
Q Consensus 331 ~lp~~~~~~~~~lp-~~L~~L~l~~N~ 356 (443)
.-+.........-+ +.++++++.+|.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 44321111000011 567888887764
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.68 E-value=6e-18 Score=161.54 Aligned_cols=156 Identities=24% Similarity=0.193 Sum_probs=86.2
Q ss_pred cccceeecccccccc----cccccccCC-CCcceeeccCccCCC----CCCchhhcCCCCCcEeccccccccc----CCC
Q 046017 199 KSLRFLETIACKKLE----RLPESLGQL-ALLCELKMIKCSSFE----SLPSSLCMLKSLTPLAIIDCKIFKR----LPN 265 (443)
Q Consensus 199 ~~L~~L~ls~n~~~~----~~p~~l~~l-~~L~~L~ls~n~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~----~~~ 265 (443)
++|++|++++|...+ .+...+..+ ++|+.|++++|.+.+ .++..+..+++|++|++++|.+.+. ++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 346666666665542 222334445 667777777776653 2233455556677777777766431 222
Q ss_pred CCCCCCCCceEEecCCCCc-----ccChhccCCCCCCEEEccCCCCCCC-Chhh-h----CCCCCCeeeCCCCCCC----
Q 046017 266 ELGNLKCLAALIVKGTAIR-----EVPESLGYLSSLAKLELSNNNLKRT-PESL-Y----QLSSLKYLKPFENNSD---- 330 (443)
Q Consensus 266 ~l~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~n~l~~l-p~~l-~----~l~~L~~L~ls~n~l~---- 330 (443)
.+..+++|++|++++|.++ .++..+..+++|++|++++|.++.. ...+ . ..+.|++|++++|.++
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 3344457777777777665 2334455666777777777766631 1111 1 2357777777777664
Q ss_pred -ccCcccccCCCCCcccccccccccCCCCc
Q 046017 331 -RIPEYLRSSPTSIPSELRSLNLSVDSGNS 359 (443)
Q Consensus 331 -~lp~~~~~~~~~lp~~L~~L~l~~N~l~~ 359 (443)
.+...+... ++|+++++++|.++.
T Consensus 268 ~~l~~~~~~~-----~~L~~l~l~~N~l~~ 292 (319)
T cd00116 268 KDLAEVLAEK-----ESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHHHHhcC-----CCccEEECCCCCCcH
Confidence 122222221 467777777776553
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.61 E-value=1.6e-17 Score=152.26 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=34.7
Q ss_pred CCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCcc
Q 046017 267 LGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRI 332 (443)
Q Consensus 267 l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~l 332 (443)
|..+++|++|++++|+++.+ +.+|.....+++|.|..|++..+. ..|.+++.|+.|+|.+|+|+.+
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 34455555555555555544 334555555555555555555443 3445555555555555555443
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=1.2e-14 Score=139.23 Aligned_cols=170 Identities=31% Similarity=0.435 Sum_probs=129.0
Q ss_pred CCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCC
Q 046017 186 SSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN 265 (443)
Q Consensus 186 ~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 265 (443)
+.+.++|..+..+..|+.+.+..|. ...+|..+.++..|++|+|+.|.+ ..+|..++.+ -|+.|-+++|++ +.+|.
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~l-pLkvli~sNNkl-~~lp~ 160 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDL-PLKVLIVSNNKL-TSLPE 160 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchh-hcCChhhhcC-cceeEEEecCcc-ccCCc
Confidence 4556677777777778888887743 456777788888888888888654 4566666655 377788887776 66777
Q ss_pred CCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcc
Q 046017 266 ELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPS 345 (443)
Q Consensus 266 ~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~ 345 (443)
.++....|..|+.+.|.+..+|..++.+.+|+.|.+..|++..+|+.+..+ .|..||+|.|++..||.++..+ .
T Consensus 161 ~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m-----~ 234 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKM-----R 234 (722)
T ss_pred ccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhh-----h
Confidence 777778888888888888888888888888888888888888888777744 5788888888888888888777 7
Q ss_pred cccccccccCCCCcccCChh
Q 046017 346 ELRSLNLSVDSGNSLNLDLN 365 (443)
Q Consensus 346 ~L~~L~l~~N~l~~l~~~~~ 365 (443)
.|++|-|.+|.+.+=|..+.
T Consensus 235 ~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 235 HLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred hheeeeeccCCCCCChHHHH
Confidence 88888888888877666554
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.35 E-value=4.6e-14 Score=135.29 Aligned_cols=162 Identities=28% Similarity=0.442 Sum_probs=93.8
Q ss_pred ceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCC
Q 046017 202 RFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT 281 (443)
Q Consensus 202 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 281 (443)
...+++.|.+ ..+|..+..+..|+.+.+..|. ...+|+.++.+..|++++++.|++ ..+|..+..++ |+.|.+++|
T Consensus 78 ~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRF-SELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhcccccc-ccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEecC
Confidence 3445555333 3355555555556666665543 334555666666666666666655 34555555544 666666666
Q ss_pred CCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCccc
Q 046017 282 AIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLN 361 (443)
Q Consensus 282 ~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~ 361 (443)
+++.+|..++..+.|..||.+.|++.++|..+..+.+|+.|.+..|++..+|+.+..+ .|..||++.|.+..||
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L------pLi~lDfScNkis~iP 227 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL------PLIRLDFSCNKISYLP 227 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC------ceeeeecccCceeecc
Confidence 6666666666556666666666666666666666666666666666666666655532 3566666666666666
Q ss_pred CChhhhhhHHHh
Q 046017 362 LDLNKLSEIVKE 373 (443)
Q Consensus 362 ~~~~~l~~l~~~ 373 (443)
.+|.++..|+..
T Consensus 228 v~fr~m~~Lq~l 239 (722)
T KOG0532|consen 228 VDFRKMRHLQVL 239 (722)
T ss_pred hhhhhhhhheee
Confidence 666666555443
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=2.2e-11 Score=119.88 Aligned_cols=134 Identities=30% Similarity=0.402 Sum_probs=65.1
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
++.+++|+.|++++|++.. +|...+..+.|+.|++++|.+ ..+|.....+..|+++.+++|.. ...+..+..+.++.
T Consensus 159 ~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~ 235 (394)
T COG4886 159 LRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLS 235 (394)
T ss_pred hhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCcc-ccCchhhhhhhhhhhhhhcCCcc-eecchhhhhccccc
Confidence 4455555555555544332 333333445555555555432 23443333344455555555532 12333344455555
Q ss_pred eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCcc
Q 046017 275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRI 332 (443)
Q Consensus 275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~l 332 (443)
.+.+.+|++..++..+..+++++.|++++|.++.++. +..+.+++.|++++|.+..+
T Consensus 236 ~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 236 GLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence 5555555555444445555555555555555555544 45555555555555555433
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=2.5e-11 Score=119.44 Aligned_cols=199 Identities=30% Similarity=0.414 Sum_probs=135.8
Q ss_pred EEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCC-CCcEEecCCCCCCCCccEEEEeCCCCcccCccccC
Q 046017 47 SLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLA-LLSELELKNSSEFEYLRVLRVEGAAIRELPESIGK 125 (443)
Q Consensus 47 ~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~-~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~ 125 (443)
.+++..+.....+ ..+..++.++.|++.++.++.+|.....++ +|+.|+ +++|.+..+|..++.
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~--------------l~~N~i~~l~~~~~~ 161 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELD--------------LSDNKIESLPSPLRN 161 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccccCccccccchhhccccc--------------ccccchhhhhhhhhc
Confidence 5777776643333 234566788899998888888887666553 444444 445777788766788
Q ss_pred CCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceee
Q 046017 126 STLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLE 205 (443)
Q Consensus 126 l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ 205 (443)
+++|+.|++++|+ + ..+|...+..+.|+.|+
T Consensus 162 l~~L~~L~l~~N~-----------------l--------------------------------~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 162 LPNLKNLDLSFND-----------------L--------------------------------SDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cccccccccCCch-----------------h--------------------------------hhhhhhhhhhhhhhhee
Confidence 8888888887762 1 22333333566777777
Q ss_pred cccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcc
Q 046017 206 TIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE 285 (443)
Q Consensus 206 ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 285 (443)
+++|++ ..+|........|+++.+++|... ..+..+.++.++..+.+.+|++ ..++..++.+++++.|++++|.++.
T Consensus 193 ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 193 LSGNKI-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred ccCCcc-ccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCcee-eeccchhccccccceeccccccccc
Confidence 777543 445555455566888888876432 3455667778888888777776 3346677788888888888888888
Q ss_pred cChhccCCCCCCEEEccCCCCCCCChhh
Q 046017 286 VPESLGYLSSLAKLELSNNNLKRTPESL 313 (443)
Q Consensus 286 lp~~~~~l~~L~~L~ls~n~l~~lp~~l 313 (443)
++. ++.+.+++.|++++|.+..++...
T Consensus 270 i~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 270 ISS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccc-ccccCccCEEeccCccccccchhh
Confidence 877 788888888888888888665433
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.17 E-value=1.2e-11 Score=110.15 Aligned_cols=129 Identities=21% Similarity=0.200 Sum_probs=60.2
Q ss_pred CCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEcc
Q 046017 223 ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELS 302 (443)
Q Consensus 223 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls 302 (443)
..|+++|+|+|.+ ..+.++..-.|.++.|+++.|.+... ..+..+++|+.||+++|.++++..+-..+-+.+.|.++
T Consensus 284 q~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccch-hhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4455555555332 23334444445555555555544321 22444555555555555555444444444455555555
Q ss_pred CCCCCCCChhhhCCCCCCeeeCCCCCCCccCc--ccccCCCCCcccccccccccCCCCcc
Q 046017 303 NNNLKRTPESLYQLSSLKYLKPFENNSDRIPE--YLRSSPTSIPSELRSLNLSVDSGNSL 360 (443)
Q Consensus 303 ~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~--~~~~~~~~lp~~L~~L~l~~N~l~~l 360 (443)
+|.+.++. .+..+-+|..||+++|+|+.+.+ .++.+ +.|+.+.+.+|.+..+
T Consensus 361 ~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-----PCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNL-----PCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccc-----cHHHHHhhcCCCcccc
Confidence 55555443 24444555555555555544332 22222 3455555555544443
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.16 E-value=2.2e-11 Score=128.52 Aligned_cols=85 Identities=27% Similarity=0.325 Sum_probs=73.2
Q ss_pred cCCCcceEEecCCCC-CCcCC-ccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcE
Q 046017 17 ERPCSCGLRLKNCSS-LESFP-SSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSE 94 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~-~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~ 94 (443)
..+.|++|-+.++.. ...++ ..|..++.|++||+++|.-.+.+|..++.+-+||+|+++++.+..+|..+.++..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 456799999988863 34444 4477899999999999988889999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 046017 95 LELKNSS 101 (443)
Q Consensus 95 L~ls~~~ 101 (443)
|++....
T Consensus 623 Lnl~~~~ 629 (889)
T KOG4658|consen 623 LNLEVTG 629 (889)
T ss_pred ecccccc
Confidence 9998754
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.2e-11 Score=115.59 Aligned_cols=197 Identities=19% Similarity=0.183 Sum_probs=120.1
Q ss_pred CCCCccEEEEeCCCCcccC--ccccCCCCCCEEeccCCCCC----------CCCCcCEEEccCCCCCCCCCCCCCCcccc
Q 046017 102 EFEYLRVLRVEGAAIRELP--ESIGKSTLLSELELKNCSEL----------KLKSLRRIKMSKCSNLKRFPKIASCNKVG 169 (443)
Q Consensus 102 ~l~~L~~L~l~~n~~~~lp--~~l~~l~~L~~L~l~~n~~~----------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~ 169 (443)
++.+|+...+.++.+...+ .....+++++.|||++|-+. .+++|+.|+++.|...-....
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-------- 190 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-------- 190 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc--------
Confidence 4455566666656655444 24456777777777776332 666666666666422111100
Q ss_pred ccCcccccccccccCCCCCcccCCcccCCcccceeeccccccccc-ccccccCCCCcceeeccCccCCCCCCchhhcCCC
Q 046017 170 ITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLER-LPESLGQLALLCELKMIKCSSFESLPSSLCMLKS 248 (443)
Q Consensus 170 l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~-~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~ 248 (443)
.. -..+++|+.|.+++|.+... +-..+..+|+|+.|++.+|.....-.....-+..
T Consensus 191 --------------------~~---~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 191 --------------------NT---TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred --------------------cc---hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 00 11445777888888877642 2223445678888888887533332233444567
Q ss_pred CCcEecccccccccC-CCCCCCCCCCceEEecCCCCccc--Chh-----ccCCCCCCEEEccCCCCCCCC--hhhhCCCC
Q 046017 249 LTPLAIIDCKIFKRL-PNELGNLKCLAALIVKGTAIREV--PES-----LGYLSSLAKLELSNNNLKRTP--ESLYQLSS 318 (443)
Q Consensus 249 L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~l--p~~-----~~~l~~L~~L~ls~n~l~~lp--~~l~~l~~ 318 (443)
|++|+|++|++...- -...+.++.|+.|+++.|.+.++ |+. ...+++|++|++..|++..++ ..+..+++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~n 327 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLEN 327 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccch
Confidence 888888888774421 13456778888888888877733 433 345778888888888887665 35666777
Q ss_pred CCeeeCCCCCC
Q 046017 319 LKYLKPFENNS 329 (443)
Q Consensus 319 L~~L~ls~n~l 329 (443)
|+.|.+..|.+
T Consensus 328 lk~l~~~~n~l 338 (505)
T KOG3207|consen 328 LKHLRITLNYL 338 (505)
T ss_pred hhhhhcccccc
Confidence 77777777766
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=6.5e-12 Score=111.86 Aligned_cols=135 Identities=19% Similarity=0.140 Sum_probs=112.7
Q ss_pred cCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCce
Q 046017 196 CMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAA 275 (443)
Q Consensus 196 ~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 275 (443)
.-++.|+++|+++|.+ ..+.++..-.|.++.|++|+|.+... ..+..+++|+.||+++|.+. .+..+-..+.++++
T Consensus 281 dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccch-hhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 3456899999999654 45667777789999999999887643 34888999999999999874 45555567889999
Q ss_pred EEecCCCCcccChhccCCCCCCEEEccCCCCCCCC--hhhhCCCCCCeeeCCCCCCCccCcc
Q 046017 276 LIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTP--ESLYQLSSLKYLKPFENNSDRIPEY 335 (443)
Q Consensus 276 L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp--~~l~~l~~L~~L~ls~n~l~~lp~~ 335 (443)
|.+++|.|.++.. ++.+-+|..||+++|+|..+. ..++++|.|+.+.+.+|.+..+|+.
T Consensus 357 L~La~N~iE~LSG-L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 357 LKLAQNKIETLSG-LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred eehhhhhHhhhhh-hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 9999999998874 788899999999999999765 4789999999999999999888874
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=6.2e-12 Score=114.33 Aligned_cols=249 Identities=19% Similarity=0.168 Sum_probs=151.3
Q ss_pred cccCCCCCcEEecccccccc----ccccccCCCCcccEEEeecC---ch-hhhhhhhccCCCCcEEecCCCCCCCCccEE
Q 046017 38 SLCVLKSLRSLQIIDCKKFE----RLLDELGNLETLLVLRVEGA---AI-RELSQSLGQLALLSELELKNSSEFEYLRVL 109 (443)
Q Consensus 38 ~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~l~~n---~l-~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L 109 (443)
.+..+..++.++|++|.+-. .+...+.+.++|+..++++- .+ .++|+.+..+. ......++|+++
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~-------~aL~~~~~L~~l 97 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLS-------KALLGCPKLQKL 97 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHH-------HHHhcCCceeEe
Confidence 35567788888888887643 34445666778888888762 22 25554433210 000122455556
Q ss_pred EEeCCCCc-----ccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCC---CCCccccccCccccccccc
Q 046017 110 RVEGAAIR-----ELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKI---ASCNKVGITGIKRLSSTLR 181 (443)
Q Consensus 110 ~l~~n~~~-----~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~---~~l~~L~l~~l~~l~~~l~ 181 (443)
+||+|.++ .+-+-+..+..|++|+|.+|.+- ..... ..+..|..
T Consensus 98 dLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-----------------~~ag~~l~~al~~l~~----------- 149 (382)
T KOG1909|consen 98 DLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-----------------PEAGGRLGRALFELAV----------- 149 (382)
T ss_pred eccccccCccchHHHHHHHHhccCHHHHhhhcCCCC-----------------hhHHHHHHHHHHHHHH-----------
Confidence 66666644 11222455667777777776322 11000 00111110
Q ss_pred ccCCCCCcccCCcccCCcccceeecccccccc----cccccccCCCCcceeeccCccCCCC----CCchhhcCCCCCcEe
Q 046017 182 LKNCSSLESLPSSLCMLKSLRFLETIACKKLE----RLPESLGQLALLCELKMIKCSSFES----LPSSLCMLKSLTPLA 253 (443)
Q Consensus 182 ~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~----~~p~~l~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~ 253 (443)
..-.+.-++|+++....|.... .+...+...+.|+.+.++.|.+... +...+..+++|++||
T Consensus 150 ----------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLd 219 (382)
T KOG1909|consen 150 ----------NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLD 219 (382)
T ss_pred ----------HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeee
Confidence 0113345678888887755432 1234456668888888888766432 234567889999999
Q ss_pred ccccccccc----CCCCCCCCCCCceEEecCCCCc-----ccChhc-cCCCCCCEEEccCCCCCC-----CChhhhCCCC
Q 046017 254 IIDCKIFKR----LPNELGNLKCLAALIVKGTAIR-----EVPESL-GYLSSLAKLELSNNNLKR-----TPESLYQLSS 318 (443)
Q Consensus 254 l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~-----~lp~~~-~~l~~L~~L~ls~n~l~~-----lp~~l~~l~~ 318 (443)
+.+|.+... +...+..+++|++|++++|.++ .+-..+ ...++|++|.+.+|.|+. +..++...+.
T Consensus 220 l~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~d 299 (382)
T KOG1909|consen 220 LRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPD 299 (382)
T ss_pred cccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchh
Confidence 999977542 3345667889999999999887 222222 346899999999999982 3456677899
Q ss_pred CCeeeCCCCCCCc
Q 046017 319 LKYLKPFENNSDR 331 (443)
Q Consensus 319 L~~L~ls~n~l~~ 331 (443)
|+.|+|++|+++.
T Consensus 300 L~kLnLngN~l~e 312 (382)
T KOG1909|consen 300 LEKLNLNGNRLGE 312 (382)
T ss_pred hHHhcCCcccccc
Confidence 9999999999953
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.3e-11 Score=115.30 Aligned_cols=206 Identities=20% Similarity=0.210 Sum_probs=141.0
Q ss_pred ccCccccCCCCCCEEeccCCCCC---------CCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCC
Q 046017 118 ELPESIGKSTLLSELELKNCSEL---------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSL 188 (443)
Q Consensus 118 ~lp~~l~~l~~L~~L~l~~n~~~---------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l 188 (443)
++..-=.++.+|++..|.++... .+++++.||+++| .+..+
T Consensus 112 ki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw----------------------------- 161 (505)
T KOG3207|consen 112 KIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNW----------------------------- 161 (505)
T ss_pred HHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhH-----------------------------
Confidence 33333346778888888877543 5677777777773 11110
Q ss_pred cccCCcccCCcccceeecccccccccccc-cccCCCCcceeeccCccCCC-CCCchhhcCCCCCcEecccccccccCCCC
Q 046017 189 ESLPSSLCMLKSLRFLETIACKKLERLPE-SLGQLALLCELKMIKCSSFE-SLPSSLCMLKSLTPLAIIDCKIFKRLPNE 266 (443)
Q Consensus 189 ~~lp~~~~~l~~L~~L~ls~n~~~~~~p~-~l~~l~~L~~L~ls~n~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 266 (443)
..+-.-...+++|+.|+++.|.+...... .-..+++|+.|.++.|.+.. .+......+|+|+.|++.+|.....-...
T Consensus 162 ~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~ 241 (505)
T KOG3207|consen 162 FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS 241 (505)
T ss_pred HHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch
Confidence 11112245788999999999876532221 11257889999999998763 23334556899999999999643333334
Q ss_pred CCCCCCCceEEecCCCCcccC--hhccCCCCCCEEEccCCCCCCC--Chh-----hhCCCCCCeeeCCCCCCCccCc--c
Q 046017 267 LGNLKCLAALIVKGTAIREVP--ESLGYLSSLAKLELSNNNLKRT--PES-----LYQLSSLKYLKPFENNSDRIPE--Y 335 (443)
Q Consensus 267 l~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L~ls~n~l~~l--p~~-----l~~l~~L~~L~ls~n~l~~lp~--~ 335 (443)
..-+..|++|+|++|.+-..+ ...+.++.|..|+++.+.+.++ |+. ...+++|++|+++.|++.+.+. .
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~ 321 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH 321 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccch
Confidence 455778999999999887665 5678899999999999999954 443 4678999999999999977664 2
Q ss_pred cccCCCCCcccccccccccCCCC
Q 046017 336 LRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 336 ~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
+.. ..+|+.|.+..|.++
T Consensus 322 l~~-----l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 322 LRT-----LENLKHLRITLNYLN 339 (505)
T ss_pred hhc-----cchhhhhhccccccc
Confidence 222 257777777776443
No 33
>PLN03150 hypothetical protein; Provisional
Probab=99.07 E-value=3.5e-10 Score=116.88 Aligned_cols=115 Identities=21% Similarity=0.282 Sum_probs=96.2
Q ss_pred ccCCCCCcc-----CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchh-hh
Q 046017 9 NIDGSTGIE-----RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIR-EL 82 (443)
Q Consensus 9 ~~~g~~~~~-----~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~l 82 (443)
.|.|+.|.. ...++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.++ .+
T Consensus 403 ~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i 482 (623)
T PLN03150 403 PWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482 (623)
T ss_pred ccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC
Confidence 799999942 124899999999998999999999999999999999999999999999999999999999998 88
Q ss_pred hhhhccCCCCcEEecCCCCCCCCccEEEEeCCC-CcccCccccCC-CCCCEEeccCC
Q 046017 83 SQSLGQLALLSELELKNSSEFEYLRVLRVEGAA-IRELPESIGKS-TLLSELELKNC 137 (443)
Q Consensus 83 p~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~-~~~lp~~l~~l-~~L~~L~l~~n 137 (443)
|+.++++++|++|++++ |. .+.+|..+... .++..+++.+|
T Consensus 483 P~~l~~L~~L~~L~Ls~--------------N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 483 PESLGQLTSLRILNLNG--------------NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred chHHhcCCCCCEEECcC--------------CcccccCChHHhhccccCceEEecCC
Confidence 99998888777777766 44 34778777553 45566777666
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=5.8e-11 Score=101.15 Aligned_cols=84 Identities=31% Similarity=0.339 Sum_probs=24.4
Q ss_pred CCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhc-cCCCCCCEEEccCCCCCCCC--hhhhCCCCCCee
Q 046017 246 LKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESL-GYLSSLAKLELSNNNLKRTP--ESLYQLSSLKYL 322 (443)
Q Consensus 246 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~~l~~L~~L~ls~n~l~~lp--~~l~~l~~L~~L 322 (443)
+.+|+.|++++|.+.. + +.+..++.|++|++++|.|++++..+ ..+++|++|++++|+|..+. ..+..+++|+.|
T Consensus 41 l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 4445555555554422 2 12444555555555555555554333 23455555555555555332 234455555555
Q ss_pred eCCCCCCCc
Q 046017 323 KPFENNSDR 331 (443)
Q Consensus 323 ~ls~n~l~~ 331 (443)
++.+|.+..
T Consensus 119 ~L~~NPv~~ 127 (175)
T PF14580_consen 119 SLEGNPVCE 127 (175)
T ss_dssp E-TT-GGGG
T ss_pred eccCCcccc
Confidence 555555543
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=2.3e-11 Score=110.67 Aligned_cols=222 Identities=19% Similarity=0.155 Sum_probs=146.1
Q ss_pred cCCCcceEEecCCCCCC----cCCccccCCCCCcEEecccccccc----ccccc-------cCCCCcccEEEeecCchh-
Q 046017 17 ERPCSCGLRLKNCSSLE----SFPSSLCVLKSLRSLQIIDCKKFE----RLLDE-------LGNLETLLVLRVEGAAIR- 80 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~----~~p~~~~~l~~L~~L~L~~n~~~~----~~p~~-------~~~l~~L~~L~l~~n~l~- 80 (443)
.+..++.+++++|.+-. .+...+.+.+.|+..++++ -++| .+|+. +...++|++||||+|.+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 56789999999998544 3445577888999999987 3344 34443 456779999999999885
Q ss_pred ----hhhhhhccCCCCcEEecCCCC-----------------------CCCCccEEEEeCCCCcccC-----ccccCCCC
Q 046017 81 ----ELSQSLGQLALLSELELKNSS-----------------------EFEYLRVLRVEGAAIRELP-----ESIGKSTL 128 (443)
Q Consensus 81 ----~lp~~~~~l~~L~~L~ls~~~-----------------------~l~~L~~L~l~~n~~~~lp-----~~l~~l~~ 128 (443)
.+-+.+.++..|++|.+.+|+ .-++|+++..++|.+..-+ ..+...+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT 186 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence 233556678888888888873 1256666666666644332 23344455
Q ss_pred CCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeeccc
Q 046017 129 LSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIA 208 (443)
Q Consensus 129 L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~ 208 (443)
|+.+.+..|.+. . .-.+-+...+..+++|+.||+.+
T Consensus 187 leevr~~qN~I~-----------------~---------------------------eG~~al~eal~~~~~LevLdl~D 222 (382)
T KOG1909|consen 187 LEEVRLSQNGIR-----------------P---------------------------EGVTALAEALEHCPHLEVLDLRD 222 (382)
T ss_pred cceEEEeccccc-----------------C---------------------------chhHHHHHHHHhCCcceeeeccc
Confidence 555555554211 0 11122334567788888888888
Q ss_pred cccccc----ccccccCCCCcceeeccCccCCCCCCchh-----hcCCCCCcEeccccccccc----CCCCCCCCCCCce
Q 046017 209 CKKLER----LPESLGQLALLCELKMIKCSSFESLPSSL-----CMLKSLTPLAIIDCKIFKR----LPNELGNLKCLAA 275 (443)
Q Consensus 209 n~~~~~----~p~~l~~l~~L~~L~ls~n~~~~~~p~~~-----~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~ 275 (443)
|.+... +...+..+++|+.|++++|.+...-...+ ...++|++|.+.+|.+... +...+...+.|+.
T Consensus 223 Ntft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~k 302 (382)
T KOG1909|consen 223 NTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEK 302 (382)
T ss_pred chhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHH
Confidence 776542 34456667888888888887755433222 2367889999998887542 1223455788999
Q ss_pred EEecCCCC
Q 046017 276 LIVKGTAI 283 (443)
Q Consensus 276 L~l~~n~l 283 (443)
|++++|.+
T Consensus 303 LnLngN~l 310 (382)
T KOG1909|consen 303 LNLNGNRL 310 (382)
T ss_pred hcCCcccc
Confidence 99999988
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=3.4e-10 Score=96.49 Aligned_cols=110 Identities=27% Similarity=0.282 Sum_probs=43.7
Q ss_pred hhcCCCCCcEecccccccccCCCCCC-CCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhh-hCCCCCC
Q 046017 243 LCMLKSLTPLAIIDCKIFKRLPNELG-NLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESL-YQLSSLK 320 (443)
Q Consensus 243 ~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l-~~l~~L~ 320 (443)
+.+...+++|+|.+|.+.. + +.++ .+.+|+.|++++|.|+.++. +..++.|++|++++|+|+++.+.+ ..+++|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 3455678999999998854 3 3455 57899999999999998874 778999999999999999997666 4699999
Q ss_pred eeeCCCCCCCccCc--ccccCCCCCcccccccccccCCCCcc
Q 046017 321 YLKPFENNSDRIPE--YLRSSPTSIPSELRSLNLSVDSGNSL 360 (443)
Q Consensus 321 ~L~ls~n~l~~lp~--~~~~~~~~lp~~L~~L~l~~N~l~~l 360 (443)
+|++++|+|.++.+ .+..+ ++|+.|++.+|.++.-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l-----~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSL-----PKLRVLSLEGNPVCEK 128 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG------TT--EEE-TT-GGGGS
T ss_pred EEECcCCcCCChHHhHHHHcC-----CCcceeeccCCcccch
Confidence 99999999977654 22222 6899999999987654
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=2.5e-09 Score=110.55 Aligned_cols=106 Identities=25% Similarity=0.342 Sum_probs=91.4
Q ss_pred CcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCc-ccChhccCCCCCCEEEcc
Q 046017 224 LLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELS 302 (443)
Q Consensus 224 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls 302 (443)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|+++ .+|..++.+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778899999888899999999999999999999998889988999999999999999888 788889999999999999
Q ss_pred CCCCC-CCChhhhCC-CCCCeeeCCCCCC
Q 046017 303 NNNLK-RTPESLYQL-SSLKYLKPFENNS 329 (443)
Q Consensus 303 ~n~l~-~lp~~l~~l-~~L~~L~ls~n~l 329 (443)
+|+++ .+|..+... .++..+++.+|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 99988 778777653 4677888888763
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=1.8e-09 Score=114.31 Aligned_cols=278 Identities=27% Similarity=0.282 Sum_probs=165.2
Q ss_pred CccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCch-hhhhhhhccCCCCc
Q 046017 15 GIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAI-RELSQSLGQLALLS 93 (443)
Q Consensus 15 ~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l-~~lp~~~~~l~~L~ 93 (443)
+..++.|++||+++|...+.+|+.++++-+||+|++++.. ...+|..++++..|.+|++..+.- ..+|.....+.+|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 4468999999999999889999999999999999999976 458999999999999999998654 35566666688888
Q ss_pred EEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcCEEEccCCCCCCCCCCCCCCcc
Q 046017 94 ELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLRRIKMSKCSNLKRFPKIASCNK 167 (443)
Q Consensus 94 ~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~~~~~l~~ 167 (443)
+|.+..-. . ......-..+.++.+|+.+........ .+..|.++...-
T Consensus 646 ~L~l~~s~-------~----~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l--------------- 699 (889)
T KOG4658|consen 646 VLRLPRSA-------L----SNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSL--------------- 699 (889)
T ss_pred EEEeeccc-------c----ccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhh---------------
Confidence 88886521 0 001111112234444444444332110 111111111000
Q ss_pred ccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccC------CCCcceeeccCccCCCCCCc
Q 046017 168 VGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQ------LALLCELKMIKCSSFESLPS 241 (443)
Q Consensus 168 L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~------l~~L~~L~ls~n~~~~~~p~ 241 (443)
.+ .+......+..+..+.+|+.|.+.+|............ ++++..+.+.+|.... .+.
T Consensus 700 -~~-------------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-~l~ 764 (889)
T KOG4658|consen 700 -SI-------------EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-DLT 764 (889)
T ss_pred -hh-------------cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc-ccc
Confidence 00 00112233445667778888888887765432222111 2334444444443322 223
Q ss_pred hhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCccc--ChhccCCCCCCEEEccCCCCCCCCh----hhhC
Q 046017 242 SLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV--PESLGYLSSLAKLELSNNNLKRTPE----SLYQ 315 (443)
Q Consensus 242 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l--p~~~~~l~~L~~L~ls~n~l~~lp~----~l~~ 315 (443)
+....++|+.|.+.+|...+.+.+....+..++.+.+..+.+..+ -...+.++++..+.+++-.+..+.. .+..
T Consensus 765 ~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~ 844 (889)
T KOG4658|consen 765 WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGK 844 (889)
T ss_pred hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCccccc
Confidence 334567888888888887776666666666666666666655533 2334556666666666544443321 2456
Q ss_pred CCCCCeeeCCCC--CCCccCc
Q 046017 316 LSSLKYLKPFEN--NSDRIPE 334 (443)
Q Consensus 316 l~~L~~L~ls~n--~l~~lp~ 334 (443)
+|.+.++.+.++ .+..+|.
T Consensus 845 ~P~~~~~~i~~~~~~~~~~~~ 865 (889)
T KOG4658|consen 845 LPLLSTLTIVGCEEKLKEYPD 865 (889)
T ss_pred CccccccceeccccceeecCC
Confidence 677777777663 3455554
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=2e-09 Score=106.29 Aligned_cols=160 Identities=30% Similarity=0.296 Sum_probs=95.8
Q ss_pred ccCCcccceeeccccccccccc-ccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCC-
Q 046017 195 LCMLKSLRFLETIACKKLERLP-ESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKC- 272 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p-~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~- 272 (443)
+..++.|+.+++++|.+...-+ . ...+..++.+++.+|.+... ..+..+..+..+++..|.+...-+ +..+..
T Consensus 158 ~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~ 232 (414)
T KOG0531|consen 158 LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVML 232 (414)
T ss_pred CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhH
Confidence 3346677778887766654433 1 45677778888887655432 233344455555777776643221 222333
Q ss_pred -CceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccc
Q 046017 273 -LAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLN 351 (443)
Q Consensus 273 -L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~ 351 (443)
|+.+++++|.+..++..+..+..+..|++.+|++..+.. +...+.+..+....|.+.............-...++.++
T Consensus 233 ~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (414)
T KOG0531|consen 233 HLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLT 311 (414)
T ss_pred HHHHHhcccCccccccccccccccccccchhhcccccccc-ccccchHHHhccCcchhcchhhhhccccccccccccccc
Confidence 788888888888776667778888888888888886543 455566667777776664221111110011225677777
Q ss_pred cccCCCCcc
Q 046017 352 LSVDSGNSL 360 (443)
Q Consensus 352 l~~N~l~~l 360 (443)
+.+|.....
T Consensus 312 ~~~~~~~~~ 320 (414)
T KOG0531|consen 312 LELNPIRKI 320 (414)
T ss_pred cccCccccc
Confidence 877765543
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.9e-10 Score=99.46 Aligned_cols=136 Identities=21% Similarity=0.278 Sum_probs=85.7
Q ss_pred CCcceEEecCCCCCC-cCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeec-Cchh--hhhhhhccCCCCcE
Q 046017 19 PCSCGLRLKNCSSLE-SFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEG-AAIR--ELSQSLGQLALLSE 94 (443)
Q Consensus 19 ~~L~~L~ls~~~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~-n~l~--~lp~~~~~l~~L~~ 94 (443)
++|++|||+...+.. .+...++.+.+|+.|.+.++++.+.+-..+++-.+|+.|+++. ++++ .+.-.+.+++.|+.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 357778887755332 2334456777888888888777777777777777888888887 5666 33355677788888
Q ss_pred EecCCCCCC------------CCccEEEEeCCC--C--cccCccccCCCCCCEEeccCCCCC---------CCCCcCEEE
Q 046017 95 LELKNSSEF------------EYLRVLRVEGAA--I--RELPESIGKSTLLSELELKNCSEL---------KLKSLRRIK 149 (443)
Q Consensus 95 L~ls~~~~l------------~~L~~L~l~~n~--~--~~lp~~l~~l~~L~~L~l~~n~~~---------~l~~L~~L~ 149 (443)
|++++|.-. ++|+.|+++++. + ..+..-...+++|.+|||++|-.+ +++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 888877422 566666666655 1 122222245666666666666444 555666666
Q ss_pred ccCCC
Q 046017 150 MSKCS 154 (443)
Q Consensus 150 l~~~~ 154 (443)
++.|.
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 66553
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=2.5e-09 Score=105.69 Aligned_cols=151 Identities=25% Similarity=0.183 Sum_probs=97.6
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCC-chhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLP-SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL 273 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 273 (443)
+..++.|+.|++++|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.. ...+..+..+
T Consensus 136 l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l 210 (414)
T KOG0531|consen 136 LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKL 210 (414)
T ss_pred hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHH
Confidence 34555688888888665442 345557888888888877654333 1 4667888888888887633 2334445556
Q ss_pred ceEEecCCCCcccChhccCCCC--CCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccc
Q 046017 274 AALIVKGTAIREVPESLGYLSS--LAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLN 351 (443)
Q Consensus 274 ~~L~l~~n~l~~lp~~~~~l~~--L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~ 351 (443)
..+++..|.++.+.. +..+.. |+.+++++|++..++..+..+..+..|++.+|++..+...- ....+..+.
T Consensus 211 ~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~------~~~~~~~~~ 283 (414)
T KOG0531|consen 211 VLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLE------RLPKLSELW 283 (414)
T ss_pred HHhhcccccceeccC-cccchhHHHHHHhcccCccccccccccccccccccchhhcccccccccc------ccchHHHhc
Confidence 666777787775543 222333 78888888888877666778888888888888876554411 124555555
Q ss_pred cccCCC
Q 046017 352 LSVDSG 357 (443)
Q Consensus 352 l~~N~l 357 (443)
...|.+
T Consensus 284 ~~~~~~ 289 (414)
T KOG0531|consen 284 LNDNKL 289 (414)
T ss_pred cCcchh
Confidence 555543
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.64 E-value=3.1e-08 Score=69.29 Aligned_cols=61 Identities=25% Similarity=0.252 Sum_probs=38.0
Q ss_pred CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCch
Q 046017 19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAI 79 (443)
Q Consensus 19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 79 (443)
++|++|++++|.+...-+.+|..+++|++|++++|.+....|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566777777653323234566677777777776666555555666777777777766653
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.59 E-value=4.7e-08 Score=68.40 Aligned_cols=58 Identities=29% Similarity=0.489 Sum_probs=30.5
Q ss_pred CCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCCC
Q 046017 248 SLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNNN 305 (443)
Q Consensus 248 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~ 305 (443)
+|++|++++|++....+..+..+++|++|++++|+++.++ ..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555554333344555555555555555555443 244555555555555554
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.50 E-value=5.9e-09 Score=97.26 Aligned_cols=128 Identities=20% Similarity=0.283 Sum_probs=76.1
Q ss_pred CCcceEEecCCCCCCcCC--ccccCCCCCcEEeccccccccc--cccccCCCCcccEEEeec-Cchhhh--hhhhccCCC
Q 046017 19 PCSCGLRLKNCSSLESFP--SSLCVLKSLRSLQIIDCKKFER--LLDELGNLETLLVLRVEG-AAIREL--SQSLGQLAL 91 (443)
Q Consensus 19 ~~L~~L~ls~~~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~l~~-n~l~~l--p~~~~~l~~ 91 (443)
..|+.|.+.||+-.+.-+ .....++++++|++.+|..++. .-..-..+++|++|++.. ..++.. -.....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468889999887555333 3345788999999998875432 112223678899999888 555532 234456788
Q ss_pred CcEEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC----------CCCCcCEEEccCCCCCC
Q 046017 92 LSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL----------KLKSLRRIKMSKCSNLK 157 (443)
Q Consensus 92 L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~----------~l~~L~~L~l~~~~~l~ 157 (443)
|++|++++|...+. +.++.+ ..++..++.+.+.+|... ...-+.++++.+|+.++
T Consensus 218 L~~lNlSwc~qi~~--------~gv~~~---~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG--------NGVQAL---QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred HHHhhhccCchhhc--------CcchHH---hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc
Confidence 88888888764322 222222 234445555555555433 33344455555554444
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.50 E-value=2.8e-07 Score=88.15 Aligned_cols=135 Identities=27% Similarity=0.440 Sum_probs=94.6
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
+..+.+++.|++++| .+..+|. -..+|+.|.+++|.....+|+.+ .++|++|++++|.....+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccc
Confidence 445688999999998 4555662 23469999999988888888765 36899999999955455664 577
Q ss_pred eEEecCCCCc---ccChhccCCCCCCEEEccCCCCC---CCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccc
Q 046017 275 ALIVKGTAIR---EVPESLGYLSSLAKLELSNNNLK---RTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELR 348 (443)
Q Consensus 275 ~L~l~~n~l~---~lp~~~~~l~~L~~L~ls~n~l~---~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~ 348 (443)
.|+++++... .+|. +|+.|.+.+++.. .+|.. -.++|++|+++++....+|+. +|.+|+
T Consensus 116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~-------LP~SLk 180 (426)
T PRK15386 116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEK-------LPESLQ 180 (426)
T ss_pred eEEeCCCCCcccccCcc------hHhheeccccccccccccccc--cCCcccEEEecCCCcccCccc-------ccccCc
Confidence 8888776543 4554 5677777543311 22211 125899999998776666653 778999
Q ss_pred ccccccCC
Q 046017 349 SLNLSVDS 356 (443)
Q Consensus 349 ~L~l~~N~ 356 (443)
.|+++.+.
T Consensus 181 ~L~ls~n~ 188 (426)
T PRK15386 181 SITLHIEQ 188 (426)
T ss_pred EEEecccc
Confidence 99998763
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.42 E-value=7.7e-07 Score=85.21 Aligned_cols=124 Identities=27% Similarity=0.392 Sum_probs=84.1
Q ss_pred CCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccc--cc
Q 046017 184 NCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKI--FK 261 (443)
Q Consensus 184 ~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~--~~ 261 (443)
+| .+..+|. -..+|++|.+++|.....+|..+ .++|++|++++|.....+|. +|+.|++.++.. .+
T Consensus 61 ~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~ 128 (426)
T PRK15386 61 DC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIK 128 (426)
T ss_pred CC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCCCCCcccc
Confidence 44 5677772 23479999999988888888655 36899999999866656653 577777876543 23
Q ss_pred cCCCCCCCCCCCceEEecCCC-C--cccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCC
Q 046017 262 RLPNELGNLKCLAALIVKGTA-I--REVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNS 329 (443)
Q Consensus 262 ~~~~~l~~l~~L~~L~l~~n~-l--~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l 329 (443)
.+|. +|+.|.+.+++ . ..+|. .-.++|++|++++|....+|..+. .+|+.|+++.+..
T Consensus 129 ~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~ 189 (426)
T PRK15386 129 NVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQK 189 (426)
T ss_pred cCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEeccccc
Confidence 3443 57777775432 1 12221 122689999999988777665444 5899999987643
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.5e-08 Score=90.66 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=37.4
Q ss_pred cCCcccceeeccccccccc-ccccccCCCCcceeeccCccCCCCCCch---hhcCCCCCcEecccc
Q 046017 196 CMLKSLRFLETIACKKLER-LPESLGQLALLCELKMIKCSSFESLPSS---LCMLKSLTPLAIIDC 257 (443)
Q Consensus 196 ~~l~~L~~L~ls~n~~~~~-~p~~l~~l~~L~~L~ls~n~~~~~~p~~---~~~l~~L~~L~l~~n 257 (443)
..+++|.+||+++|..+.. ....+.+++.|++|.++.|.. .+|+. +...|+|.+|++.+|
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 4667777777777655432 334556677777777777753 34443 345567777777765
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.38 E-value=2.9e-07 Score=59.17 Aligned_cols=39 Identities=33% Similarity=0.459 Sum_probs=19.4
Q ss_pred CCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccC
Q 046017 295 SLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIP 333 (443)
Q Consensus 295 ~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp 333 (443)
+|++|++++|+|+.+|+.++.+++|++|++++|++++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 455555555555555544555555555555555555443
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=5.7e-09 Score=103.53 Aligned_cols=86 Identities=29% Similarity=0.230 Sum_probs=39.2
Q ss_pred chhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCC
Q 046017 241 SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLK 320 (443)
Q Consensus 241 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~ 320 (443)
+++.-++.++.|+|++|++... +.+..++.|++|||++|.++.+|..-..--.|+.|.+++|.++++- .+.++.+|+
T Consensus 181 ~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~ 257 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLY 257 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhh-hHHhhhhhh
Confidence 3444444455555555544321 1344445555555555555544421111112555555555555443 244555555
Q ss_pred eeeCCCCCC
Q 046017 321 YLKPFENNS 329 (443)
Q Consensus 321 ~L~ls~n~l 329 (443)
.||+++|-|
T Consensus 258 ~LDlsyNll 266 (1096)
T KOG1859|consen 258 GLDLSYNLL 266 (1096)
T ss_pred ccchhHhhh
Confidence 555555554
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=2.8e-08 Score=78.93 Aligned_cols=88 Identities=18% Similarity=0.321 Sum_probs=48.8
Q ss_pred CCCceEEecCCCCcccChhccC-CCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccc
Q 046017 271 KCLAALIVKGTAIREVPESLGY-LSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRS 349 (443)
Q Consensus 271 ~~L~~L~l~~n~l~~lp~~~~~-l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~ 349 (443)
..|+..++++|.+.++|+.+.. ++.++.|++++|.|+.+|..+..++.|+.|+++.|.+...|..+..+ .++-.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L-----~~l~~ 127 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPL-----IKLDM 127 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHH-----HhHHH
Confidence 3455555666666655554433 23556666666666666655666666666666666665555554443 44555
Q ss_pred cccccCCCCcccCC
Q 046017 350 LNLSVDSGNSLNLD 363 (443)
Q Consensus 350 L~l~~N~l~~l~~~ 363 (443)
|+.-+|....+|.+
T Consensus 128 Lds~~na~~eid~d 141 (177)
T KOG4579|consen 128 LDSPENARAEIDVD 141 (177)
T ss_pred hcCCCCccccCcHH
Confidence 55555555555443
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=2.5e-08 Score=79.14 Aligned_cols=112 Identities=25% Similarity=0.333 Sum_probs=87.2
Q ss_pred CcceeeccCccCCCCCCch---hhcCCCCCcEecccccccccCCCCC-CCCCCCceEEecCCCCcccChhccCCCCCCEE
Q 046017 224 LLCELKMIKCSSFESLPSS---LCMLKSLTPLAIIDCKIFKRLPNEL-GNLKCLAALIVKGTAIREVPESLGYLSSLAKL 299 (443)
Q Consensus 224 ~L~~L~ls~n~~~~~~p~~---~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L 299 (443)
.+..++|+.|.+. .+++. +.....|+..++++|.+ ..+|+.| ..++.+++|++++|+|+.+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 4556677776543 23333 33445677778888887 4455544 45668999999999999999999999999999
Q ss_pred EccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccc
Q 046017 300 ELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLR 337 (443)
Q Consensus 300 ~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~ 337 (443)
+++.|.+...|..+..+.++..|+..+|.+..||..+.
T Consensus 106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLF 143 (177)
T ss_pred ccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHh
Confidence 99999999999888889999999999999999988753
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.32 E-value=7.2e-07 Score=57.35 Aligned_cols=41 Identities=32% Similarity=0.456 Sum_probs=33.1
Q ss_pred CCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh
Q 046017 271 KCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE 311 (443)
Q Consensus 271 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~ 311 (443)
++|++|++++|+|+.+|+.+..+++|+.|++++|++++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46888999999998888888889999999999998887753
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=1.1e-07 Score=94.79 Aligned_cols=105 Identities=22% Similarity=0.262 Sum_probs=82.8
Q ss_pred CCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCC
Q 046017 247 KSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPF 325 (443)
Q Consensus 247 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls 325 (443)
..|...+.+.|++ ..+..++.-++.|+.|+|+.|+++++. .+..++.|+.|||++|.+..+|. ...++. |..|.++
T Consensus 164 n~L~~a~fsyN~L-~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRL-VLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhH-HhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4577777888877 345566777889999999999999877 68889999999999999998884 233444 9999999
Q ss_pred CCCCCccCcccccCCCCCcccccccccccCCCCcc
Q 046017 326 ENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL 360 (443)
Q Consensus 326 ~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l 360 (443)
+|.++++-. +.++ .+|+.||+++|.+...
T Consensus 241 nN~l~tL~g-ie~L-----ksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 241 NNALTTLRG-IENL-----KSLYGLDLSYNLLSEH 269 (1096)
T ss_pred ccHHHhhhh-HHhh-----hhhhccchhHhhhhcc
Confidence 999987754 3444 7899999999966543
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=5.4e-07 Score=80.85 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=29.1
Q ss_pred CCCCCcEEecccccccc--ccccccCCCCcccEEEeecCchh
Q 046017 41 VLKSLRSLQIIDCKKFE--RLLDELGNLETLLVLRVEGAAIR 80 (443)
Q Consensus 41 ~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~ 80 (443)
..+.++.+||.+|.+.+ .+...+.++|.|++|+++.|.+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 56778888888877654 55555667888888888887765
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=1.7e-06 Score=77.74 Aligned_cols=62 Identities=24% Similarity=0.259 Sum_probs=38.4
Q ss_pred cCCCCCcEEecccccccc-ccccccC-CCCcccEEEeecCchh---hhhhhhccCCCCcEEecCCCC
Q 046017 40 CVLKSLRSLQIIDCKKFE-RLLDELG-NLETLLVLRVEGAAIR---ELSQSLGQLALLSELELKNSS 101 (443)
Q Consensus 40 ~~l~~L~~L~L~~n~~~~-~~p~~~~-~l~~L~~L~l~~n~l~---~lp~~~~~l~~L~~L~ls~~~ 101 (443)
.....++.|.+.++.+-. .....|+ ..+.++.+|+.+|.+. ++-..+.+++.|++|+++.|+
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~ 108 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS 108 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence 334455566666654432 1111222 5678899999999886 555666777777777777653
No 56
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.00 E-value=7.2e-07 Score=83.63 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=46.2
Q ss_pred CCCcEEecccccccc--ccccccCCCCcccEEEeecC-chhh--hhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCc
Q 046017 43 KSLRSLQIIDCKKFE--RLLDELGNLETLLVLRVEGA-AIRE--LSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIR 117 (443)
Q Consensus 43 ~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~ 117 (443)
..||.|.++++.-.+ .+-..-.+++++++|++.+. ++++ +-..-..+++|++|++..|..++... +.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~--------Lk 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS--------LK 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH--------HH
Confidence 357888888876443 22223446777787777763 3331 11222345666666666654321100 11
Q ss_pred ccCccccCCCCCCEEeccCCCC
Q 046017 118 ELPESIGKSTLLSELELKNCSE 139 (443)
Q Consensus 118 ~lp~~l~~l~~L~~L~l~~n~~ 139 (443)
.+ ...+++|++|+++.|.-
T Consensus 210 ~l---a~gC~kL~~lNlSwc~q 228 (483)
T KOG4341|consen 210 YL---AEGCRKLKYLNLSWCPQ 228 (483)
T ss_pred HH---HHhhhhHHHhhhccCch
Confidence 11 23567777777777643
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.90 E-value=1.9e-06 Score=76.53 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=44.7
Q ss_pred CCCcceEEecCCCCCCcC----CccccCCCCCcEEecccccccc----ccc-------cccCCCCcccEEEeecCchh-h
Q 046017 18 RPCSCGLRLKNCSSLESF----PSSLCVLKSLRSLQIIDCKKFE----RLL-------DELGNLETLLVLRVEGAAIR-E 81 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~----p~~~~~l~~L~~L~L~~n~~~~----~~p-------~~~~~l~~L~~L~l~~n~l~-~ 81 (443)
+..++.++||+|.+.++- ...+.+-.+|++.++++ -+++ .++ .++-++++|+..++|.|.+. .
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd-~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD-AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh-hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 456777777777654432 23345566777777765 2232 222 23456777777777777664 3
Q ss_pred hh----hhhccCCCCcEEecCCC
Q 046017 82 LS----QSLGQLALLSELELKNS 100 (443)
Q Consensus 82 lp----~~~~~l~~L~~L~ls~~ 100 (443)
.| +.+++-+.|++|.+++|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecC
Confidence 33 33344444444444443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.89 E-value=5.3e-06 Score=86.06 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=80.3
Q ss_pred CCCcceEEecCCCCCC-cCCcccc-CCCCCcEEecccccccc-ccccccCCCCcccEEEeecCchhhhhhhhccCCCCcE
Q 046017 18 RPCSCGLRLKNCSSLE-SFPSSLC-VLKSLRSLQIIDCKKFE-RLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSE 94 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~-~~p~~~~-~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~ 94 (443)
-.+|++||++|..... .-|..++ .+|.|++|.+.+-.+.. .+.....++++|+.||+|+++++.+ .+++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 3578899998865332 3333444 57899999998755432 3444566889999999999888877 67888888888
Q ss_pred EecCCCC-----------CCCCccEEEEeCCCCcccCc-------cccCCCCCCEEeccCCCC
Q 046017 95 LELKNSS-----------EFEYLRVLRVEGAAIRELPE-------SIGKSTLLSELELKNCSE 139 (443)
Q Consensus 95 L~ls~~~-----------~l~~L~~L~l~~n~~~~lp~-------~l~~l~~L~~L~l~~n~~ 139 (443)
|.+.+.. +|++|+.||+|.......+. .-..+|+|+.||.++...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 8776642 55777777777655332221 112366777777766543
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.69 E-value=4.5e-06 Score=74.14 Aligned_cols=137 Identities=16% Similarity=0.060 Sum_probs=72.2
Q ss_pred CCcccceeeccccccccccc-----ccccCCCCcceeeccCccCCCCC-----CchhhcCCCCCcEeccccccccc----
Q 046017 197 MLKSLRFLETIACKKLERLP-----ESLGQLALLCELKMIKCSSFESL-----PSSLCMLKSLTPLAIIDCKIFKR---- 262 (443)
Q Consensus 197 ~l~~L~~L~ls~n~~~~~~p-----~~l~~l~~L~~L~ls~n~~~~~~-----p~~~~~l~~L~~L~l~~n~~~~~---- 262 (443)
+-+.|++.....|.+.. .| ..+..-..|+.+.+..|.+...- -..+..+.+|+.||+.+|.++..
T Consensus 155 ~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 155 DKPKLEVVICGRNRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred cCCCceEEEeccchhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 33456666665544322 11 11222245666666666543221 11233456777777777766432
Q ss_pred CCCCCCCCCCCceEEecCCCCcc-----cChhc--cCCCCCCEEEccCCCCCC-------CChh-hhCCCCCCeeeCCCC
Q 046017 263 LPNELGNLKCLAALIVKGTAIRE-----VPESL--GYLSSLAKLELSNNNLKR-------TPES-LYQLSSLKYLKPFEN 327 (443)
Q Consensus 263 ~~~~l~~l~~L~~L~l~~n~l~~-----lp~~~--~~l~~L~~L~ls~n~l~~-------lp~~-l~~l~~L~~L~ls~n 327 (443)
+...+..++.|++|.+.+|-++. +-..+ ...++|..|-..+|.+.. +|.. -..+|-|..|.+.+|
T Consensus 234 La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN 313 (388)
T COG5238 234 LADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN 313 (388)
T ss_pred HHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC
Confidence 12234455667777777776551 11111 234677777777776551 2221 245677778888888
Q ss_pred CCCccCc
Q 046017 328 NSDRIPE 334 (443)
Q Consensus 328 ~l~~lp~ 334 (443)
++.....
T Consensus 314 r~~E~~d 320 (388)
T COG5238 314 RIKELAD 320 (388)
T ss_pred cchhHHH
Confidence 8866544
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=4.1e-05 Score=65.28 Aligned_cols=103 Identities=23% Similarity=0.375 Sum_probs=61.8
Q ss_pred CCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccC-CCCCCEEEccCCCCCCCC--hhhhCCCCCCeeeC
Q 046017 248 SLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGY-LSSLAKLELSNNNLKRTP--ESLYQLSSLKYLKP 324 (443)
Q Consensus 248 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~-l~~L~~L~ls~n~l~~lp--~~l~~l~~L~~L~l 324 (443)
+...+|+++|.+.. + ..+..++.|.+|.+.+|.|+.+.+.+.. +++|+.|.+.+|.|..+- ..+..+|+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 45566777776632 2 3456667777777777777766555544 356777777777777543 34667777777777
Q ss_pred CCCCCCccCcccccCCCCCcccccccccc
Q 046017 325 FENNSDRIPEYLRSSPTSIPSELRSLNLS 353 (443)
Q Consensus 325 s~n~l~~lp~~~~~~~~~lp~~L~~L~l~ 353 (443)
-+|.++.-...-....-.+ ++|+.||..
T Consensus 121 l~Npv~~k~~YR~yvl~kl-p~l~~LDF~ 148 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKL-PSLRTLDFQ 148 (233)
T ss_pred cCCchhcccCceeEEEEec-CcceEeehh
Confidence 7777765543211110112 466666654
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.46 E-value=4.5e-05 Score=79.30 Aligned_cols=108 Identities=21% Similarity=0.238 Sum_probs=82.6
Q ss_pred CccCCCCCccCCCcceEEecCCCCCC-cCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh--h
Q 046017 8 CNIDGSTGIERPCSCGLRLKNCSSLE-SFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS--Q 84 (443)
Q Consensus 8 c~~~g~~~~~~~~L~~L~ls~~~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp--~ 84 (443)
+.|...-+..+|.|++|.+++-.+.. ++.....++++|+.||+++.++.. + ..++++++|+.|.+.+=.+..-. .
T Consensus 137 ~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~ 214 (699)
T KOG3665|consen 137 NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLI 214 (699)
T ss_pred ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHH
Confidence 45655455578999999999865433 344456689999999999977543 3 67889999999999986665322 4
Q ss_pred hhccCCCCcEEecCCCC----------------CCCCccEEEEeCCCCc
Q 046017 85 SLGQLALLSELELKNSS----------------EFEYLRVLRVEGAAIR 117 (443)
Q Consensus 85 ~~~~l~~L~~L~ls~~~----------------~l~~L~~L~l~~n~~~ 117 (443)
.+.++++|+.||+|.-. .+|+|+.||.+++.+.
T Consensus 215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 56789999999999742 5799999999998854
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.39 E-value=0.00036 Score=59.69 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=28.3
Q ss_pred CCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccC-CCCcEEecCC
Q 046017 44 SLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQL-ALLSELELKN 99 (443)
Q Consensus 44 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l-~~L~~L~ls~ 99 (443)
....+||++|.+. .++ .|..++.|.+|.+.+|.|+.+...+..+ ++|+.|.+.+
T Consensus 43 ~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 4456666666532 222 3445666666666666666555444432 3344444443
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.35 E-value=0.00012 Score=65.07 Aligned_cols=101 Identities=24% Similarity=0.262 Sum_probs=51.1
Q ss_pred CCCcceeeccCccCCCCCCchhhcCCCCCcEecccc--cccccCCCCCCCCCCCceEEecCCCCcc---cChhccCCCCC
Q 046017 222 LALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDC--KIFKRLPNELGNLKCLAALIVKGTAIRE---VPESLGYLSSL 296 (443)
Q Consensus 222 l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~n~l~~---lp~~~~~l~~L 296 (443)
+..|+.|.+.++.++.. ..+-.+++|+.|.++.| +..+.++.....+++|++|++++|++.. +++ +..+.+|
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENL 118 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcch
Confidence 34455555554443321 12334566666666666 4444444444445666666666665552 221 3445556
Q ss_pred CEEEccCCCCCCCC----hhhhCCCCCCeeeCC
Q 046017 297 AKLELSNNNLKRTP----ESLYQLSSLKYLKPF 325 (443)
Q Consensus 297 ~~L~ls~n~l~~lp----~~l~~l~~L~~L~ls 325 (443)
..|++.+|..+.+- ..+.-+++|++||-.
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 66666666555432 234445555555533
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.08 E-value=0.00028 Score=62.75 Aligned_cols=62 Identities=21% Similarity=0.132 Sum_probs=31.7
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEecccc--ccccccccccCCCCcccEEEeecCchh
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDC--KKFERLLDELGNLETLLVLRVEGAAIR 80 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n--~~~~~~p~~~~~l~~L~~L~l~~n~l~ 80 (443)
.+..++.|++.+++.++ +. .+-.+++|+.|.++.| +..+.++.-...+++|++|++++|++.
T Consensus 41 ~~~~le~ls~~n~gltt-~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT-LT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceee-cc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34455555555544221 11 1334556666666666 444444433444566666666666654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.66 E-value=0.0083 Score=48.54 Aligned_cols=119 Identities=12% Similarity=0.116 Sum_probs=48.2
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
|..+++|+.+.+.. .....-...|..+++|+.+.+.++ ....-...|..+++++.+.+.+ .....-...+..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 55666777777654 333323345666667777777653 3332333455665677777754 22222223455566677
Q ss_pred eEEecCCCCcccCh-hccCCCCCCEEEccCCCCCCCC-hhhhCCCCC
Q 046017 275 ALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLKRTP-ESLYQLSSL 319 (443)
Q Consensus 275 ~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L 319 (443)
.+++..+ +..++. .+... .|+.+.+.. .+..++ ..+.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666554 444432 23443 666666654 344443 345555544
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.65 E-value=0.00031 Score=70.89 Aligned_cols=105 Identities=28% Similarity=0.360 Sum_probs=55.9
Q ss_pred CCCCCcEEeccccccccc--cccccCCCCcccEEEeecC--chhh----hhhhhccCCCCcEEecCCCCCCCCccEEEEe
Q 046017 41 VLKSLRSLQIIDCKKFER--LLDELGNLETLLVLRVEGA--AIRE----LSQSLGQLALLSELELKNSSEFEYLRVLRVE 112 (443)
Q Consensus 41 ~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~l~~n--~l~~----lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~ 112 (443)
.++.|+.|.+.++..... +-.....+++|+.|+++++ .... .......+++|+.|+++++.. ++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--------is 257 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL--------VT 257 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc--------cC
Confidence 467777777777755443 3344557778888887752 1111 112233445566666655432 11
Q ss_pred CCCCcccCccccCCCCCCEEeccCCCCC----------CCCCcCEEEccCCCCC
Q 046017 113 GAAIRELPESIGKSTLLSELELKNCSEL----------KLKSLRRIKMSKCSNL 156 (443)
Q Consensus 113 ~n~~~~lp~~l~~l~~L~~L~l~~n~~~----------~l~~L~~L~l~~~~~l 156 (443)
+..+..+ ...+++|++|.+.+|..+ .+++|++|++++|..+
T Consensus 258 d~~l~~l---~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 258 DIGLSAL---ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred chhHHHH---HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 1111111 122566777766666532 5666777777776554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=8e-05 Score=66.61 Aligned_cols=81 Identities=20% Similarity=0.142 Sum_probs=60.1
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh--hhhccCCCCcE
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS--QSLGQLALLSE 94 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~ 94 (443)
.+.+++.|++-||+ +..+.- ..+|+.|++|.|+-|++...- .+..+++|+.|+|+.|.|..+. ..+.++++|+.
T Consensus 17 dl~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 46678889999987 444432 558999999999988865433 3778899999999999988665 44567777777
Q ss_pred EecCCCC
Q 046017 95 LELKNSS 101 (443)
Q Consensus 95 L~ls~~~ 101 (443)
|.|..|+
T Consensus 93 LWL~ENP 99 (388)
T KOG2123|consen 93 LWLDENP 99 (388)
T ss_pred HhhccCC
Confidence 7776654
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.38 E-value=0.00057 Score=68.96 Aligned_cols=129 Identities=26% Similarity=0.286 Sum_probs=72.7
Q ss_pred CCCcccEEEeecC-chhh--hhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC-
Q 046017 65 NLETLLVLRVEGA-AIRE--LSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL- 140 (443)
Q Consensus 65 ~l~~L~~L~l~~n-~l~~--lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~- 140 (443)
.++.|+.|.+.+. .++. +-......+.|+.|+++++..... ..-.........+++|+.|+++.+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--------~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLIT--------LSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccc--------cchhHhhhhhhhcCCcCccchhhhhccC
Confidence 4688888888773 4443 445556677788888776310000 000001112345688888888888733
Q ss_pred ---------CCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccc
Q 046017 141 ---------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKK 211 (443)
Q Consensus 141 ---------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~ 211 (443)
.+++|++|.+.+|..++.- .+-.....+++|++|++++|..
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~------------------------------gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDE------------------------------GLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchh------------------------------HHHHHHHhcCcccEEeeecCcc
Confidence 4788999888777543211 1111134567788888888776
Q ss_pred ccc--ccccccCCCCcceeecc
Q 046017 212 LER--LPESLGQLALLCELKMI 231 (443)
Q Consensus 212 ~~~--~p~~l~~l~~L~~L~ls 231 (443)
... +.....++++|+.|.+.
T Consensus 308 ~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 308 LTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred chHHHHHHHHHhCcchhhhhhh
Confidence 422 22223345555555443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.0005 Score=61.67 Aligned_cols=81 Identities=23% Similarity=0.248 Sum_probs=63.8
Q ss_pred CCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCC--hhhhCCCCCCeee
Q 046017 246 LKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTP--ESLYQLSSLKYLK 323 (443)
Q Consensus 246 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp--~~l~~l~~L~~L~ 323 (443)
+.+.+.|+..+|.+.. + .....|+.|++|.|+-|+|+++.+ +..|+.|++|+|..|.|.++. ..+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~D-I-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccH-H-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4567788888887743 2 234678889999999999988765 677889999999999988775 4678889999999
Q ss_pred CCCCCC
Q 046017 324 PFENNS 329 (443)
Q Consensus 324 ls~n~l 329 (443)
|..|.-
T Consensus 95 L~ENPC 100 (388)
T KOG2123|consen 95 LDENPC 100 (388)
T ss_pred hccCCc
Confidence 888765
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.00 E-value=0.0028 Score=33.85 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=6.5
Q ss_pred ccEEEeecCchhhhhh
Q 046017 69 LLVLRVEGAAIRELSQ 84 (443)
Q Consensus 69 L~~L~l~~n~l~~lp~ 84 (443)
|++||+++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3344444444444433
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.87 E-value=0.004 Score=33.21 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=8.3
Q ss_pred CceEEecCCCCcccChh
Q 046017 273 LAALIVKGTAIREVPES 289 (443)
Q Consensus 273 L~~L~l~~n~l~~lp~~ 289 (443)
|++|++++|+++.+|..
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44455555544444443
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.83 E-value=0.03 Score=45.17 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=51.4
Q ss_pred cccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCC
Q 046017 218 SLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSL 296 (443)
Q Consensus 218 ~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L 296 (443)
.|.++++|+.+.+.. .....-...|..+++|+.+.+.++ +...-...+.++++++.+.+.+ .+..++. .+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 456666777777764 333333445666677777777664 3332233466666777777765 4444432 34456777
Q ss_pred CEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccCc
Q 046017 297 AKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPE 334 (443)
Q Consensus 297 ~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp~ 334 (443)
+.+++..+ +..++ ..+.++ .|+.+.+.. .+..++.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~ 119 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE 119 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS---
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC
Confidence 77777654 55443 345555 677776654 4444444
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.34 E-value=0.0088 Score=29.61 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=3.9
Q ss_pred CCeeeCCCCCCCc
Q 046017 319 LKYLKPFENNSDR 331 (443)
Q Consensus 319 L~~L~ls~n~l~~ 331 (443)
|++|++++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3334444433333
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.11 E-value=0.013 Score=28.98 Aligned_cols=15 Identities=47% Similarity=0.618 Sum_probs=5.9
Q ss_pred CCCEEEccCCCCCCC
Q 046017 295 SLAKLELSNNNLKRT 309 (443)
Q Consensus 295 ~L~~L~ls~n~l~~l 309 (443)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 445555555554444
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.22 E-value=0.04 Score=30.58 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=12.0
Q ss_pred CCCCeeeCCCCCCCccCccc
Q 046017 317 SSLKYLKPFENNSDRIPEYL 336 (443)
Q Consensus 317 ~~L~~L~ls~n~l~~lp~~~ 336 (443)
++|++|++++|+|+.+|...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666543
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.22 E-value=0.04 Score=30.58 Aligned_cols=20 Identities=20% Similarity=0.218 Sum_probs=12.0
Q ss_pred CCCCeeeCCCCCCCccCccc
Q 046017 317 SSLKYLKPFENNSDRIPEYL 336 (443)
Q Consensus 317 ~~L~~L~ls~n~l~~lp~~~ 336 (443)
++|++|++++|+|+.+|...
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 45666666666666666543
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.58 E-value=0.0035 Score=54.96 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=54.5
Q ss_pred cCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeC
Q 046017 245 MLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKP 324 (443)
Q Consensus 245 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~l 324 (443)
.....+.||++.|++. .+-..+..++.|..|+++.|++..+|..++....+..+++..|..+..|.++...++++++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 3445566666666552 233445556666677777777777777666666777777777777777777777777777777
Q ss_pred CCCCC
Q 046017 325 FENNS 329 (443)
Q Consensus 325 s~n~l 329 (443)
.+|.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 66654
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.58 E-value=0.0031 Score=62.98 Aligned_cols=165 Identities=25% Similarity=0.244 Sum_probs=93.6
Q ss_pred CcccCCcccceeeccccccccc----ccccccCC-CCcceeeccCccCCCC----CCchhhcCCCCCcEecccccccc--
Q 046017 193 SSLCMLKSLRFLETIACKKLER----LPESLGQL-ALLCELKMIKCSSFES----LPSSLCMLKSLTPLAIIDCKIFK-- 261 (443)
Q Consensus 193 ~~~~~l~~L~~L~ls~n~~~~~----~p~~l~~l-~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~-- 261 (443)
..+.....|+.|++++|++... +-..+... ..+++|++..|..... +.+.+.....++.++++.|.+..
T Consensus 109 ~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g 188 (478)
T KOG4308|consen 109 QALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELG 188 (478)
T ss_pred HHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhh
Confidence 3345556777788887766532 11122222 4566677777666443 34455556777788887776631
Q ss_pred --cCCCCC----CCCCCCceEEecCCCCcc-----cChhccCCCC-CCEEEccCCCCCCC-----ChhhhCC-CCCCeee
Q 046017 262 --RLPNEL----GNLKCLAALIVKGTAIRE-----VPESLGYLSS-LAKLELSNNNLKRT-----PESLYQL-SSLKYLK 323 (443)
Q Consensus 262 --~~~~~l----~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~-L~~L~ls~n~l~~l-----p~~l~~l-~~L~~L~ 323 (443)
.++..+ ....++++|.+++|.++. +...+...++ +..|++..|.+... .+.+..+ ..+++++
T Consensus 189 ~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 189 LLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLD 268 (478)
T ss_pred hHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhh
Confidence 112222 235677888888887662 2233444555 66688888877632 3445555 6778888
Q ss_pred CCCCCCCcc-CcccccCCCCCcccccccccccCCCC
Q 046017 324 PFENNSDRI-PEYLRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 324 ls~n~l~~l-p~~~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
++.|.|++- ...+....... +.++++.+++|.++
T Consensus 269 l~~nsi~~~~~~~L~~~l~~~-~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 269 LSRNSITEKGVRDLAEVLVSC-RQLEELSLSNNPLT 303 (478)
T ss_pred hhcCCccccchHHHHHHHhhh-HHHHHhhcccCccc
Confidence 888877432 12222211112 37778888777554
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.39 E-value=0.14 Score=28.34 Aligned_cols=20 Identities=45% Similarity=0.687 Sum_probs=14.8
Q ss_pred CCCCCEEEccCCCCCCCChh
Q 046017 293 LSSLAKLELSNNNLKRTPES 312 (443)
Q Consensus 293 l~~L~~L~ls~n~l~~lp~~ 312 (443)
+++|+.|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35778888888888877754
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.39 E-value=0.14 Score=28.34 Aligned_cols=20 Identities=45% Similarity=0.687 Sum_probs=14.8
Q ss_pred CCCCCEEEccCCCCCCCChh
Q 046017 293 LSSLAKLELSNNNLKRTPES 312 (443)
Q Consensus 293 l~~L~~L~ls~n~l~~lp~~ 312 (443)
+++|+.|+|++|+|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35778888888888877754
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.99 E-value=0.0016 Score=64.93 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=18.3
Q ss_pred ccEEEEeCCCCcc-----cCccccCCCCCCEEeccCCC
Q 046017 106 LRVLRVEGAAIRE-----LPESIGKSTLLSELELKNCS 138 (443)
Q Consensus 106 L~~L~l~~n~~~~-----lp~~l~~l~~L~~L~l~~n~ 138 (443)
+..+.+.+|.++. +-..+...+.|+.|++++|.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~ 126 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNN 126 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCC
Confidence 4555555555442 23334556677777777763
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.58 E-value=0.0041 Score=54.55 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=69.4
Q ss_pred CCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcc
Q 046017 266 ELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPS 345 (443)
Q Consensus 266 ~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~ 345 (443)
.+.....-+.||++.|++..+-..+.-++.|..|+++.|++..+|..+.+...++.+++..|..+..|.+.... +
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~-----~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKE-----P 111 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccccc-----C
Confidence 35566778888888888877776677778888888888888888888888888888888888888888877765 6
Q ss_pred cccccccccCC
Q 046017 346 ELRSLNLSVDS 356 (443)
Q Consensus 346 ~L~~L~l~~N~ 356 (443)
.++++++.+|.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 78888887774
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.50 E-value=0.096 Score=28.96 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=15.6
Q ss_pred cccccccccccCCCCcccC
Q 046017 344 PSELRSLNLSVDSGNSLNL 362 (443)
Q Consensus 344 p~~L~~L~l~~N~l~~l~~ 362 (443)
|++|+.|++++|+++++|.
T Consensus 1 P~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 1 PPSLKELNVSNNQLTSLPE 19 (26)
T ss_pred CcccceeecCCCccccCcc
Confidence 4678888999988888875
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.37 E-value=0.31 Score=26.94 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=13.9
Q ss_pred CCCCeeeCCCCCCCccCc
Q 046017 317 SSLKYLKPFENNSDRIPE 334 (443)
Q Consensus 317 ~~L~~L~ls~n~l~~lp~ 334 (443)
++|++|++++|+|+++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367788888888888876
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.70 E-value=0.11 Score=44.77 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=17.3
Q ss_pred cceeeccCccCCCCCCchhhcCCCCCcEecccccc
Q 046017 225 LCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKI 259 (443)
Q Consensus 225 L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 259 (443)
++.++-+++.+..+--+.+..++.++.|.+.+|.-
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~ 137 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKY 137 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccc
Confidence 44555555444444334444555555555555543
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.51 E-value=0.21 Score=43.19 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=16.9
Q ss_pred cccEEEeecCchhhh-hhhhccCCCCcEEecCCCC
Q 046017 68 TLLVLRVEGAAIREL-SQSLGQLALLSELELKNSS 101 (443)
Q Consensus 68 ~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~~~ 101 (443)
.++.+|-++..|... -+.+..++.++.|.+.+|.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 345556666555422 1444455555555555543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=82.32 E-value=1.2 Score=24.77 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=9.0
Q ss_pred CCCCeeeCCCCCCCcc
Q 046017 317 SSLKYLKPFENNSDRI 332 (443)
Q Consensus 317 ~~L~~L~ls~n~l~~l 332 (443)
++|+.|++++|+|+.|
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4555666666665544
No 88
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=78.11 E-value=0.46 Score=25.61 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=4.3
Q ss_pred cccEEEeecCch
Q 046017 68 TLLVLRVEGAAI 79 (443)
Q Consensus 68 ~L~~L~l~~n~l 79 (443)
+|++|++++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.98 E-value=3.8 Score=23.06 Aligned_cols=14 Identities=29% Similarity=0.228 Sum_probs=8.4
Q ss_pred CCCCeeeCCCCCCC
Q 046017 317 SSLKYLKPFENNSD 330 (443)
Q Consensus 317 ~~L~~L~ls~n~l~ 330 (443)
++|++|+|++|.++
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=62.12 E-value=5.5 Score=21.83 Aligned_cols=15 Identities=33% Similarity=0.806 Sum_probs=9.5
Q ss_pred CCcCEEEccCCCCCC
Q 046017 143 KSLRRIKMSKCSNLK 157 (443)
Q Consensus 143 ~~L~~L~l~~~~~l~ 157 (443)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666676666554
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=55.83 E-value=6.4 Score=39.52 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=16.8
Q ss_pred cCCCcceEEecCCCCCC--cCCccccCCCCCcEEecccc
Q 046017 17 ERPCSCGLRLKNCSSLE--SFPSSLCVLKSLRSLQIIDC 53 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~--~~p~~~~~l~~L~~L~L~~n 53 (443)
+.+.+..++|++|++.. .+...-...++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555555555555221 11121223455555555555
No 92
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=44.92 E-value=7.6 Score=24.34 Aligned_cols=11 Identities=27% Similarity=0.459 Sum_probs=9.0
Q ss_pred CCCCccCCCCC
Q 046017 5 IPSCNIDGSTG 15 (443)
Q Consensus 5 ~~~c~~~g~~~ 15 (443)
.++|.|.||+|
T Consensus 32 ~~~C~W~GV~C 42 (43)
T PF08263_consen 32 SDPCSWSGVTC 42 (43)
T ss_dssp S-CCCSTTEEE
T ss_pred CCCeeeccEEe
Confidence 68999999987
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.89 E-value=21 Score=36.02 Aligned_cols=60 Identities=20% Similarity=0.172 Sum_probs=37.3
Q ss_pred CCCCCceEEecCCCCccc---ChhccCCCCCCEEEccCC--CCCCCChhhh--CCCCCCeeeCCCCCC
Q 046017 269 NLKCLAALIVKGTAIREV---PESLGYLSSLAKLELSNN--NLKRTPESLY--QLSSLKYLKPFENNS 329 (443)
Q Consensus 269 ~l~~L~~L~l~~n~l~~l---p~~~~~l~~L~~L~ls~n--~l~~lp~~l~--~l~~L~~L~ls~n~l 329 (443)
+.+.+..+.+++|++..+ .......|.|+.|+|++| .+...++ +. +...|++|-+.+|.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~k~l~Leel~l~GNPl 282 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESE-LDKLKGLPLEELVLEGNPL 282 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhh-hhhhcCCCHHHeeecCCcc
Confidence 456677778888866533 333345578888888888 4442221 21 233577888888877
No 94
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=24.99 E-value=66 Score=20.16 Aligned_cols=11 Identities=36% Similarity=0.839 Sum_probs=6.2
Q ss_pred Ccccccccccc
Q 046017 343 IPSELRSLNLS 353 (443)
Q Consensus 343 lp~~L~~L~l~ 353 (443)
+|+++++|.+.
T Consensus 32 lP~sl~~L~fg 42 (44)
T PF05725_consen 32 LPNSLKSLSFG 42 (44)
T ss_pred cCCCceEEEee
Confidence 55566666543
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.19 E-value=61 Score=39.58 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=24.7
Q ss_pred EecCCCCcccCh-hccCCCCCCEEEccCCCCC
Q 046017 277 IVKGTAIREVPE-SLGYLSSLAKLELSNNNLK 307 (443)
Q Consensus 277 ~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~ 307 (443)
||++|+|+.+|. .|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 578889988875 4667889999999998776
Done!