Query 046017
Match_columns 443
No_of_seqs 538 out of 4066
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 13:41:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2E-40 6.9E-45 351.3 26.8 395 3-403 35-537 (768)
2 4eco_A Uncharacterized protein 100.0 1.2E-40 4E-45 345.6 24.4 354 4-364 63-585 (636)
3 3rgz_A Protein brassinosteroid 100.0 2.3E-39 7.8E-44 343.2 23.4 336 17-357 267-716 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 1.1E-38 3.8E-43 337.3 25.9 355 2-364 292-825 (876)
5 3vq2_A TLR4, TOLL-like recepto 100.0 2.3E-36 7.9E-41 312.4 30.0 345 18-368 31-544 (606)
6 4eco_A Uncharacterized protein 100.0 9.9E-37 3.4E-41 316.2 23.5 317 35-362 198-604 (636)
7 3t6q_A CD180 antigen; protein- 100.0 6.6E-36 2.3E-40 309.0 28.6 290 18-307 32-413 (606)
8 2z81_A CD282 antigen, TOLL-lik 100.0 3.4E-36 1.2E-40 307.5 23.0 332 18-363 25-491 (549)
9 3t6q_A CD180 antigen; protein- 100.0 8.1E-35 2.8E-39 300.9 33.0 374 16-396 54-535 (606)
10 3v47_A TOLL-like receptor 5B a 100.0 1.6E-35 5.3E-40 295.6 25.1 324 19-360 30-410 (455)
11 4ecn_A Leucine-rich repeat pro 100.0 2.2E-35 7.5E-40 312.1 26.4 317 35-362 440-844 (876)
12 2z7x_B TOLL-like receptor 1, v 100.0 1.1E-34 3.8E-39 294.3 25.3 117 19-139 21-150 (520)
13 3j0a_A TOLL-like receptor 5; m 100.0 6.4E-34 2.2E-38 304.5 31.1 343 8-358 14-464 (844)
14 2z7x_B TOLL-like receptor 1, v 100.0 5.7E-34 1.9E-38 289.1 27.7 336 22-370 3-446 (520)
15 2z63_A TOLL-like receptor 4, v 100.0 5.5E-34 1.9E-38 292.4 27.0 123 18-140 27-162 (570)
16 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.1E-34 2.8E-38 290.7 27.0 135 18-155 30-181 (562)
17 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-34 1.4E-38 295.5 25.1 367 20-396 12-557 (606)
18 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.7E-34 1.6E-38 292.4 25.0 342 10-363 43-491 (562)
19 1ziw_A TOLL-like receptor 3; i 100.0 2.7E-33 9.3E-38 293.3 31.0 327 19-363 222-602 (680)
20 2z63_A TOLL-like receptor 4, v 100.0 2.1E-33 7.3E-38 288.0 27.4 338 16-362 49-511 (570)
21 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-32 4E-37 288.5 32.1 138 18-155 24-183 (680)
22 1ogq_A PGIP-2, polygalacturona 100.0 3.7E-34 1.3E-38 271.3 15.7 260 4-356 30-302 (313)
23 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-33 9.1E-38 286.1 22.7 337 7-364 3-450 (549)
24 1o6v_A Internalin A; bacterial 100.0 9E-33 3.1E-37 276.4 25.8 307 17-360 44-368 (466)
25 1o6v_A Internalin A; bacterial 100.0 1.7E-32 5.8E-37 274.4 26.7 313 16-364 65-394 (466)
26 3o6n_A APL1; leucine-rich repe 100.0 6.5E-33 2.2E-37 271.1 23.1 293 17-359 43-353 (390)
27 4g8a_A TOLL-like receptor 4; l 100.0 6.5E-32 2.2E-36 280.1 31.3 122 19-140 52-186 (635)
28 4fmz_A Internalin; leucine ric 100.0 5.1E-32 1.7E-36 260.5 26.3 290 17-358 42-346 (347)
29 3j0a_A TOLL-like receptor 5; m 100.0 3.3E-32 1.1E-36 291.3 27.0 310 16-330 45-464 (844)
30 3oja_B Anopheles plasmodium-re 100.0 1.3E-32 4.3E-37 283.6 22.0 292 17-358 49-358 (597)
31 3v47_A TOLL-like receptor 5B a 100.0 3.9E-32 1.3E-36 271.0 23.4 315 16-333 51-412 (455)
32 2id5_A Lingo-1, leucine rich r 100.0 1.5E-31 5E-36 268.5 27.2 281 18-330 31-333 (477)
33 1jl5_A Outer protein YOPM; leu 100.0 2.5E-32 8.7E-37 271.4 21.0 310 17-362 9-354 (454)
34 2id5_A Lingo-1, leucine rich r 100.0 1.6E-31 5.5E-36 268.2 23.8 300 21-359 13-334 (477)
35 3bz5_A Internalin-J, INLJ; leu 100.0 5.8E-31 2E-35 261.9 25.9 284 17-332 40-354 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 4.3E-31 1.5E-35 258.1 23.7 273 17-331 67-353 (390)
37 1jl5_A Outer protein YOPM; leu 100.0 6E-31 2.1E-35 261.5 21.6 316 16-367 31-382 (454)
38 1xku_A Decorin; proteoglycan, 100.0 7.9E-30 2.7E-34 243.5 26.8 259 20-330 32-306 (330)
39 4fmz_A Internalin; leucine ric 100.0 6.3E-30 2.2E-34 245.8 25.7 269 16-331 63-347 (347)
40 3oja_B Anopheles plasmodium-re 100.0 2.5E-30 8.5E-35 266.4 23.4 272 17-330 73-358 (597)
41 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-29 3.9E-34 242.6 24.9 268 20-358 34-307 (332)
42 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-29 6E-34 251.2 25.4 294 28-360 27-354 (457)
43 1ogq_A PGIP-2, polygalacturona 100.0 1.4E-30 4.8E-35 246.7 16.5 175 190-371 116-294 (313)
44 4fcg_A Uncharacterized protein 100.0 3.2E-30 1.1E-34 245.8 16.3 242 4-310 57-317 (328)
45 4g8a_A TOLL-like receptor 4; l 100.0 4.4E-29 1.5E-33 258.9 26.4 130 22-154 34-184 (635)
46 1xku_A Decorin; proteoglycan, 100.0 2.6E-28 8.8E-33 233.0 26.3 259 18-328 51-330 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 4.1E-28 1.4E-32 231.8 23.7 269 18-356 53-331 (332)
48 4fcg_A Uncharacterized protein 100.0 3.5E-28 1.2E-32 231.6 19.2 238 41-334 79-318 (328)
49 2z80_A TOLL-like receptor 2, v 100.0 2.7E-28 9.1E-33 235.1 18.3 265 23-359 35-315 (353)
50 3g06_A SSPH2 (leucine-rich rep 100.0 3.9E-27 1.3E-31 241.4 23.4 270 5-360 19-299 (622)
51 2z66_A Variable lymphocyte rec 100.0 3.9E-27 1.3E-31 222.4 20.0 245 23-358 11-261 (306)
52 1z7x_W Ribonuclease inhibitor; 99.9 1.6E-29 5.6E-34 252.3 2.4 310 17-359 26-412 (461)
53 2z80_A TOLL-like receptor 2, v 99.9 1.4E-27 4.9E-32 230.0 15.3 253 18-332 51-316 (353)
54 3o53_A Protein LRIM1, AGAP0063 99.9 3.3E-28 1.1E-32 230.9 7.4 259 20-355 11-272 (317)
55 2z66_A Variable lymphocyte rec 99.9 1.8E-26 6.2E-31 217.7 17.0 243 3-308 2-262 (306)
56 1wwl_A Monocyte differentiatio 99.9 3.7E-28 1.3E-32 230.0 4.1 134 194-330 168-309 (312)
57 1ozn_A Reticulon 4 receptor; N 99.9 9.2E-26 3.1E-30 210.7 19.2 221 22-307 14-238 (285)
58 3zyj_A Leucine-rich repeat-con 99.9 7.5E-25 2.6E-29 217.3 24.4 243 20-329 44-291 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 5.5E-25 1.9E-29 219.0 23.1 243 20-329 55-302 (452)
60 3zyi_A Leucine-rich repeat-con 99.9 3.8E-25 1.3E-29 220.2 21.4 227 18-307 74-303 (452)
61 3o53_A Protein LRIM1, AGAP0063 99.9 2E-26 6.7E-31 218.6 11.2 253 44-373 11-267 (317)
62 3oja_A Leucine-rich immune mol 99.9 4.6E-26 1.6E-30 228.5 13.1 234 43-353 34-270 (487)
63 1wwl_A Monocyte differentiatio 99.9 1.4E-27 4.8E-32 226.0 1.4 253 39-359 39-310 (312)
64 3g06_A SSPH2 (leucine-rich rep 99.9 4.5E-24 1.5E-28 218.7 25.7 248 43-375 40-291 (622)
65 1z7x_W Ribonuclease inhibitor; 99.9 2.7E-27 9.3E-32 236.2 1.5 313 18-358 2-383 (461)
66 3zyj_A Leucine-rich repeat-con 99.9 5.6E-24 1.9E-28 211.0 22.3 227 18-307 63-292 (440)
67 1ozn_A Reticulon 4 receptor; N 99.9 5.2E-25 1.8E-29 205.6 13.6 206 17-284 30-238 (285)
68 2o6q_A Variable lymphocyte rec 99.9 7.8E-24 2.7E-28 196.0 20.8 77 5-84 2-78 (270)
69 3oja_A Leucine-rich immune mol 99.9 2.1E-25 7.2E-30 223.7 10.9 236 17-325 32-270 (487)
70 3ogk_B Coronatine-insensitive 99.9 2.5E-25 8.6E-30 229.0 2.6 320 21-359 140-527 (592)
71 2z62_A TOLL-like receptor 4, v 99.9 9.6E-23 3.3E-27 189.2 17.4 219 23-330 11-237 (276)
72 2z62_A TOLL-like receptor 4, v 99.9 1.7E-22 5.9E-27 187.5 16.6 163 194-360 71-239 (276)
73 2o6q_A Variable lymphocyte rec 99.9 9.8E-22 3.3E-26 181.8 20.7 162 194-359 56-219 (270)
74 1p9a_G Platelet glycoprotein I 99.9 5.5E-22 1.9E-26 185.3 19.0 158 194-359 50-209 (290)
75 1p9a_G Platelet glycoprotein I 99.9 1E-21 3.6E-26 183.4 20.2 64 17-83 8-71 (290)
76 3ogk_B Coronatine-insensitive 99.9 3.5E-24 1.2E-28 220.5 -0.9 323 17-357 71-500 (592)
77 2xwt_C Thyrotropin receptor; s 99.9 1.5E-21 5E-26 177.3 15.0 152 195-355 76-236 (239)
78 2ast_B S-phase kinase-associat 99.9 5E-23 1.7E-27 196.7 5.1 234 6-304 35-282 (336)
79 1h6u_A Internalin H; cell adhe 99.9 1E-21 3.5E-26 185.2 13.8 134 195-336 103-236 (308)
80 1h6u_A Internalin H; cell adhe 99.9 1.3E-21 4.3E-26 184.6 14.3 156 195-364 81-236 (308)
81 2ca6_A RAN GTPase-activating p 99.9 2.4E-23 8.1E-28 202.9 1.8 46 34-79 23-72 (386)
82 3rfs_A Internalin B, repeat mo 99.9 6.6E-21 2.3E-25 176.4 17.1 163 195-368 81-246 (272)
83 4glp_A Monocyte differentiatio 99.9 5.2E-21 1.8E-25 180.6 16.4 223 67-358 64-307 (310)
84 4glp_A Monocyte differentiatio 99.9 3.3E-21 1.1E-25 182.0 13.8 160 196-362 114-289 (310)
85 2xwt_C Thyrotropin receptor; s 99.9 1.1E-20 3.6E-25 171.6 16.6 202 32-327 23-236 (239)
86 3rfs_A Internalin B, repeat mo 99.9 3.5E-21 1.2E-25 178.3 13.3 138 195-338 105-244 (272)
87 2ca6_A RAN GTPase-activating p 99.8 1.6E-22 5.4E-27 197.1 3.8 245 57-361 22-319 (386)
88 3m19_A Variable lymphocyte rec 99.8 4E-20 1.4E-24 169.1 19.0 173 189-368 27-202 (251)
89 3goz_A Leucine-rich repeat-con 99.8 6.3E-22 2.1E-26 191.1 6.5 250 23-330 2-297 (362)
90 3m19_A Variable lymphocyte rec 99.8 6.2E-20 2.1E-24 167.8 18.3 178 105-332 15-194 (251)
91 2ast_B S-phase kinase-associat 99.8 4.8E-22 1.7E-26 189.8 4.0 161 193-360 136-308 (336)
92 2p1m_B Transport inhibitor res 99.8 1.3E-22 4.5E-27 208.8 -2.4 137 17-153 64-245 (594)
93 3goz_A Leucine-rich repeat-con 99.8 4.2E-22 1.4E-26 192.4 1.2 251 47-360 2-299 (362)
94 4ay9_X Follicle-stimulating ho 99.8 1E-19 3.6E-24 174.7 17.2 154 193-355 98-256 (350)
95 2p1m_B Transport inhibitor res 99.8 1.5E-21 5E-26 200.9 2.3 321 17-357 103-518 (594)
96 3cvr_A Invasion plasmid antige 99.8 1.5E-19 5.3E-24 183.0 16.5 115 200-329 121-242 (571)
97 4ay9_X Follicle-stimulating ho 99.8 7.4E-19 2.5E-23 168.7 16.4 222 70-361 12-240 (350)
98 3cvr_A Invasion plasmid antige 99.8 4.7E-19 1.6E-23 179.4 15.2 139 198-359 99-244 (571)
99 1dce_A Protein (RAB geranylger 99.8 1.3E-22 4.4E-27 206.4 -12.1 109 224-336 442-552 (567)
100 1h6t_A Internalin B; cell adhe 99.8 1.1E-18 3.8E-23 163.0 13.2 132 195-334 86-217 (291)
101 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.4E-23 162.0 14.0 154 195-362 64-217 (291)
102 2o6s_A Variable lymphocyte rec 99.8 3.5E-18 1.2E-22 151.4 13.2 177 3-248 2-190 (208)
103 4ezg_A Putative uncharacterize 99.8 2.8E-18 9.6E-23 150.7 12.3 154 195-359 40-195 (197)
104 2o6s_A Variable lymphocyte rec 99.8 7.2E-18 2.5E-22 149.4 14.5 166 188-366 19-187 (208)
105 4ezg_A Putative uncharacterize 99.8 2.5E-18 8.4E-23 151.1 10.2 134 194-331 61-195 (197)
106 2xot_A Amphoterin-induced prot 99.7 8.6E-18 3E-22 162.0 13.3 165 188-358 30-202 (361)
107 3e6j_A Variable lymphocyte rec 99.7 2.3E-17 7.8E-22 148.5 15.1 152 201-360 21-174 (229)
108 3e6j_A Variable lymphocyte rec 99.7 4.5E-17 1.6E-21 146.5 16.2 144 186-331 29-173 (229)
109 1m9s_A Internalin B; cell inva 99.7 1.6E-17 5.6E-22 169.8 14.3 128 197-332 85-212 (605)
110 2xot_A Amphoterin-induced prot 99.7 2.8E-17 9.7E-22 158.3 14.6 134 197-330 62-202 (361)
111 1m9s_A Internalin B; cell inva 99.7 3.8E-17 1.3E-21 167.2 14.2 155 195-363 61-215 (605)
112 2v9t_B SLIT homolog 2 protein 99.7 7.7E-17 2.6E-21 144.1 14.3 150 202-359 14-166 (220)
113 2v9t_B SLIT homolog 2 protein 99.7 7.4E-17 2.5E-21 144.2 13.7 143 186-330 21-165 (220)
114 2ell_A Acidic leucine-rich nuc 99.7 1.9E-17 6.5E-22 141.5 8.9 133 223-362 24-164 (168)
115 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-16 3.6E-21 143.2 14.0 150 202-359 14-167 (220)
116 1xeu_A Internalin C; cellular 99.7 8E-18 2.7E-22 154.7 6.6 131 195-334 59-189 (263)
117 1xeu_A Internalin C; cellular 99.7 5.8E-17 2E-21 148.9 12.2 160 188-363 31-190 (263)
118 2ell_A Acidic leucine-rich nuc 99.7 6.1E-17 2.1E-21 138.3 11.5 137 197-335 22-165 (168)
119 2v70_A SLIT-2, SLIT homolog 2 99.7 2.2E-16 7.7E-21 141.0 15.0 129 201-329 34-165 (220)
120 1dce_A Protein (RAB geranylger 99.7 6E-19 2.1E-23 179.4 -2.9 173 187-368 360-556 (567)
121 4b8c_D Glucose-repressible alc 99.7 3.3E-17 1.1E-21 171.6 4.9 227 7-306 162-403 (727)
122 2je0_A Acidic leucine-rich nuc 99.6 1.5E-16 5.2E-21 132.9 7.2 124 223-353 17-148 (149)
123 2je0_A Acidic leucine-rich nuc 99.6 3E-16 1E-20 131.1 8.8 128 197-326 15-149 (149)
124 4b8c_D Glucose-repressible alc 99.6 7.7E-17 2.6E-21 168.8 3.6 125 194-327 242-369 (727)
125 1a9n_A U2A', U2A'; complex (nu 99.6 3E-15 1E-19 128.8 10.0 132 219-358 15-153 (176)
126 1w8a_A SLIT protein; signaling 99.6 1.4E-14 4.7E-19 126.5 12.4 125 202-329 11-138 (192)
127 1a9n_A U2A', U2A'; complex (nu 99.6 4.6E-15 1.6E-19 127.6 7.3 134 195-332 15-155 (176)
128 2wfh_A SLIT homolog 2 protein 99.5 8.9E-14 3E-18 121.4 13.5 104 248-357 32-138 (193)
129 1w8a_A SLIT protein; signaling 99.5 6.4E-14 2.2E-18 122.2 12.5 118 189-308 21-140 (192)
130 1ds9_A Outer arm dynein; leuci 99.5 1.1E-16 3.8E-21 140.6 -6.1 134 195-332 14-155 (198)
131 3sb4_A Hypothetical leucine ri 99.5 1.3E-14 4.5E-19 137.8 7.4 88 246-335 225-315 (329)
132 2o6r_A Variable lymphocyte rec 99.5 2.2E-13 7.5E-18 117.1 13.6 109 247-359 28-138 (177)
133 2wfh_A SLIT homolog 2 protein 99.5 2.4E-13 8.3E-18 118.6 11.9 125 202-330 13-139 (193)
134 3sb4_A Hypothetical leucine ri 99.5 9.8E-14 3.3E-18 131.8 9.5 125 198-324 201-328 (329)
135 2o6r_A Variable lymphocyte rec 99.5 4.6E-13 1.6E-17 115.1 12.4 129 201-332 9-139 (177)
136 4fdw_A Leucine rich hypothetic 99.4 4.3E-12 1.5E-16 123.4 19.8 153 194-355 221-380 (401)
137 1ds9_A Outer arm dynein; leuci 99.4 4.5E-16 1.5E-20 136.7 -9.0 134 219-360 14-155 (198)
138 2r9u_A Variable lymphocyte rec 99.4 2.2E-12 7.6E-17 110.4 11.8 107 250-364 15-124 (174)
139 2r9u_A Variable lymphocyte rec 99.4 2.3E-12 7.9E-17 110.3 11.6 107 226-335 15-123 (174)
140 3g39_A Variable lymphocyte rec 99.3 6.5E-12 2.2E-16 107.1 11.6 84 271-359 30-116 (170)
141 3g39_A Variable lymphocyte rec 99.3 8.7E-12 3E-16 106.3 10.4 107 225-334 11-119 (170)
142 4fdw_A Leucine rich hypothetic 99.3 1.6E-10 5.4E-15 112.3 18.4 255 17-329 111-382 (401)
143 3un9_A NLR family member X1; l 99.2 4.8E-13 1.6E-17 128.9 -2.4 156 199-359 72-253 (372)
144 4fs7_A Uncharacterized protein 99.1 6.3E-09 2.2E-13 101.0 20.6 287 37-355 65-376 (394)
145 3un9_A NLR family member X1; l 99.1 6.8E-12 2.3E-16 120.8 -1.2 136 198-333 100-255 (372)
146 2ifg_A High affinity nerve gro 99.1 2.6E-10 9.1E-15 108.8 9.5 102 205-307 14-116 (347)
147 2ifg_A High affinity nerve gro 99.1 5E-10 1.7E-14 106.8 10.4 104 227-331 12-117 (347)
148 4fs7_A Uncharacterized protein 99.0 5E-08 1.7E-12 94.6 20.1 270 60-360 64-357 (394)
149 4gt6_A Cell surface protein; l 98.9 1.5E-07 5.2E-12 91.2 21.2 108 217-328 259-368 (394)
150 4gt6_A Cell surface protein; l 98.8 3.1E-07 1.1E-11 89.0 20.5 290 20-328 65-389 (394)
151 2ra8_A Uncharacterized protein 98.8 8.6E-10 2.9E-14 105.3 0.8 158 193-358 133-320 (362)
152 2ra8_A Uncharacterized protein 98.7 3.6E-09 1.2E-13 101.0 3.8 136 193-331 166-321 (362)
153 4h09_A Hypothetical leucine ri 98.7 5E-06 1.7E-10 79.9 24.7 134 195-333 213-348 (379)
154 4h09_A Hypothetical leucine ri 98.7 2.3E-06 7.9E-11 82.3 20.7 149 197-354 192-342 (379)
155 1io0_A Tropomodulin; LRR prote 98.5 2.2E-08 7.4E-13 86.3 0.8 114 216-329 29-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 2.7E-08 9.1E-13 85.7 0.7 112 242-358 31-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.8E-07 6.1E-12 84.8 1.3 62 245-307 168-233 (267)
158 3rw6_A Nuclear RNA export fact 98.2 7.5E-07 2.6E-11 80.7 3.0 79 220-300 167-257 (267)
159 3e4g_A ATP synthase subunit S, 98.0 4.2E-06 1.4E-10 70.5 5.2 35 20-54 62-96 (176)
160 3e4g_A ATP synthase subunit S, 97.9 2.6E-06 8.9E-11 71.7 2.1 82 224-305 62-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00019 6.4E-09 61.5 1.8 56 271-326 70-135 (197)
162 1pgv_A TMD-1, tropomodulin TMD 96.9 0.001 3.4E-08 57.0 5.4 17 121-137 151-167 (197)
163 3rfe_A Platelet glycoprotein I 96.9 0.0016 5.6E-08 51.9 6.3 52 275-328 12-66 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.0065 2.2E-07 48.3 5.2 56 297-358 11-68 (130)
165 2lz0_A Uncharacterized protein 28.0 72 0.0025 23.2 4.3 39 37-76 14-52 (100)
166 2lz0_A Uncharacterized protein 25.2 1.6E+02 0.0056 21.2 5.8 36 195-231 16-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-40 Score=351.31 Aligned_cols=395 Identities=19% Similarity=0.184 Sum_probs=265.2
Q ss_pred CCCCCCccCCCCCccCCCcceEEecCCCCCCc---CC-----------------------ccccCCCCCcEEeccccccc
Q 046017 3 PKIPSCNIDGSTGIERPCSCGLRLKNCSSLES---FP-----------------------SSLCVLKSLRSLQIIDCKKF 56 (443)
Q Consensus 3 ~~~~~c~~~g~~~~~~~~L~~L~ls~~~~~~~---~p-----------------------~~~~~l~~L~~L~L~~n~~~ 56 (443)
.+.+||+|.||+|. -.+++.|+++++.+.+. +| ..++.+++|++|+|++|.+.
T Consensus 35 ~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~ 113 (768)
T 3rgz_A 35 SNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLS 113 (768)
T ss_dssp TTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEE
T ss_pred CCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCC
Confidence 36789999999996 46677777776665444 32 34556666666666666666
Q ss_pred ccccc--ccCCCCcccEEEeecCchh-hhhhh----------------------------hccCCCCcEEecCCC-----
Q 046017 57 ERLLD--ELGNLETLLVLRVEGAAIR-ELSQS----------------------------LGQLALLSELELKNS----- 100 (443)
Q Consensus 57 ~~~p~--~~~~l~~L~~L~l~~n~l~-~lp~~----------------------------~~~l~~L~~L~ls~~----- 100 (443)
+.+|. .++++++|++|++++|.++ .+|.. +.++++|++|++++|
T Consensus 114 ~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 193 (768)
T 3rgz_A 114 GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193 (768)
T ss_dssp EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC
T ss_pred CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc
Confidence 55555 5555555555555555543 22222 344455555555544
Q ss_pred ---CCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCCCCCCCC--CCCcc
Q 046017 101 ---SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLKRFPKI--ASCNK 167 (443)
Q Consensus 101 ---~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l~~~~~~--~~l~~ 167 (443)
..+++|++|++++|.+...+..++++++|++|++++|.+. .+++|++|++++|.....+|.. .+++.
T Consensus 194 ~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~ 273 (768)
T 3rgz_A 194 VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQY 273 (768)
T ss_dssp CBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCE
T ss_pred CCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCE
Confidence 2457777777777776554333778888888888888664 6788888888887665556554 66777
Q ss_pred ccc--cCcc-cccccccc----------cCCCCCcccCCcccCCcccceeeccccccccccccc-ccCCCCcceeeccCc
Q 046017 168 VGI--TGIK-RLSSTLRL----------KNCSSLESLPSSLCMLKSLRFLETIACKKLERLPES-LGQLALLCELKMIKC 233 (443)
Q Consensus 168 L~l--~~l~-~l~~~l~~----------~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~-l~~l~~L~~L~ls~n 233 (443)
|++ +.+. .+|..+.. .+|...+.+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 776 5554 44543321 133333467777888888888888888887777765 788888888888888
Q ss_pred cCCCCCCchhhcCC-CCCcEecccccccccCCCCCCC--CCCCceEEecCCCCc-ccChhccCCCCCCEEEccCCCCC-C
Q 046017 234 SSFESLPSSLCMLK-SLTPLAIIDCKIFKRLPNELGN--LKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNNNLK-R 308 (443)
Q Consensus 234 ~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls~n~l~-~ 308 (443)
.+.+.+|..+..++ +|++|++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|+++ .
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence 88778888887776 7888888888877777766655 677888888888777 66777777888888888888777 5
Q ss_pred CChhhhCCCCCCeeeCCCCCCC-ccCcccccCCCCCcccccccccccCCCC-cccCChhhhhhHHHhcccccccc-----
Q 046017 309 TPESLYQLSSLKYLKPFENNSD-RIPEYLRSSPTSIPSELRSLNLSVDSGN-SLNLDLNKLSEIVKEGWMKQSFH----- 381 (443)
Q Consensus 309 lp~~l~~l~~L~~L~ls~n~l~-~lp~~~~~~~~~lp~~L~~L~l~~N~l~-~l~~~~~~l~~l~~~~~~~~~~~----- 381 (443)
+|..+..+++|++|++++|++. .+|..+..+ ++|++|++++|.++ .+|..+.+++.+...+...+.+.
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~ 508 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-----KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-----TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-----CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh
Confidence 6777777888888888887774 677766654 67788888877666 45666665555544333332222
Q ss_pred ---cccceeEEEecCCC----CCcccccC
Q 046017 382 ---GQSWIKSMYFPGNE----IPKWFRHQ 403 (443)
Q Consensus 382 ---~~~~~~~~~l~g~~----ip~w~~~~ 403 (443)
....++.+.+.+|. +|.++..-
T Consensus 509 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 509 WIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred HHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 22335666677663 46666543
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-40 Score=345.59 Aligned_cols=354 Identities=12% Similarity=0.139 Sum_probs=280.5
Q ss_pred CCCCCcc---CCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEecccccc-------------------------
Q 046017 4 KIPSCNI---DGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKK------------------------- 55 (443)
Q Consensus 4 ~~~~c~~---~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~------------------------- 55 (443)
..++|.| .||.|..-.+++.|+|+++.+.+.+|++++++++|++|+|++|.+
T Consensus 63 ~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (636)
T 4eco_A 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142 (636)
T ss_dssp SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH
T ss_pred CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHH
Confidence 4688999 999997668999999999999899999999999999999998843
Q ss_pred ----------------------------------------------------ccccccccCCCCcccEEEeecCchhh--
Q 046017 56 ----------------------------------------------------FERLLDELGNLETLLVLRVEGAAIRE-- 81 (443)
Q Consensus 56 ----------------------------------------------------~~~~p~~~~~l~~L~~L~l~~n~l~~-- 81 (443)
...+|..++++++|++|++++|.++.
T Consensus 143 l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~ 222 (636)
T 4eco_A 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAEN 222 (636)
T ss_dssp THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGG
T ss_pred hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCcccccc
Confidence 11388889999999999999999987
Q ss_pred ----------------hhhhhc--cCCCCcEEecCCCC----------CCCCccEEEEeCCC-Cc--ccCccccCC----
Q 046017 82 ----------------LSQSLG--QLALLSELELKNSS----------EFEYLRVLRVEGAA-IR--ELPESIGKS---- 126 (443)
Q Consensus 82 ----------------lp~~~~--~l~~L~~L~ls~~~----------~l~~L~~L~l~~n~-~~--~lp~~l~~l---- 126 (443)
+|..++ ++++|++|++++|. ++++|++|++++|. ++ .+|..++.+
T Consensus 223 ~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~ 302 (636)
T 4eco_A 223 ICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP 302 (636)
T ss_dssp BSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSG
T ss_pred ccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccc
Confidence 999988 99999999999873 56899999999998 77 488887776
Q ss_pred --CCCCEEeccCCCCC---------CCCCcCEEEccCCCCCCCCCCC---CCCccccc--cCccccccccccc-------
Q 046017 127 --TLLSELELKNCSEL---------KLKSLRRIKMSKCSNLKRFPKI---ASCNKVGI--TGIKRLSSTLRLK------- 183 (443)
Q Consensus 127 --~~L~~L~l~~n~~~---------~l~~L~~L~l~~~~~l~~~~~~---~~l~~L~l--~~l~~l~~~l~~~------- 183 (443)
++|++|++++|.+. .+++|++|++++|.....+|.. .+++.|++ +.+..+|..+...
T Consensus 303 ~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 303 VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382 (636)
T ss_dssp GGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEE
T ss_pred cCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEE
Confidence 89999999998754 5677999999986554478743 45555666 6666665433221
Q ss_pred --CCCCCcccCCcccCCc--ccceeeccccccccccccccc-------CCCCcceeeccCccCCCCCCch-hhcCCCCCc
Q 046017 184 --NCSSLESLPSSLCMLK--SLRFLETIACKKLERLPESLG-------QLALLCELKMIKCSSFESLPSS-LCMLKSLTP 251 (443)
Q Consensus 184 --~~~~l~~lp~~~~~l~--~L~~L~ls~n~~~~~~p~~l~-------~l~~L~~L~ls~n~~~~~~p~~-~~~l~~L~~ 251 (443)
..+.+..+|..+..++ +|++|++++|.+.+..|..+. .+++|++|++++|.+. .+|.. +..+++|++
T Consensus 383 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~ 461 (636)
T 4eco_A 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSS 461 (636)
T ss_dssp ECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSE
T ss_pred EccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCE
Confidence 2344557777776654 788888888888888877777 6778888888888776 45544 455888888
Q ss_pred EecccccccccCCCCCCC--------CCCCceEEecCCCCcccChhcc--CCCCCCEEEccCCCCCCCChhhhCCCCCCe
Q 046017 252 LAIIDCKIFKRLPNELGN--------LKCLAALIVKGTAIREVPESLG--YLSSLAKLELSNNNLKRTPESLYQLSSLKY 321 (443)
Q Consensus 252 L~l~~n~~~~~~~~~l~~--------l~~L~~L~l~~n~l~~lp~~~~--~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~ 321 (443)
|++++|++. .+|..... +++|++|++++|+++.+|..+. .+++|+.|++++|+++++|..+..+++|++
T Consensus 462 L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~ 540 (636)
T 4eco_A 462 INLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540 (636)
T ss_dssp EECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred EECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence 888888886 56654332 2288888888888888888876 888888999988888888888888888888
Q ss_pred eeCC------CCCC-CccCcccccCCCCCcccccccccccCCCCcccCCh
Q 046017 322 LKPF------ENNS-DRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDL 364 (443)
Q Consensus 322 L~ls------~n~l-~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~ 364 (443)
|+++ +|++ +.+|..+..+ ++|++|++++|.++.+|..+
T Consensus 541 L~Ls~N~~ls~N~l~~~~p~~l~~l-----~~L~~L~Ls~N~l~~ip~~~ 585 (636)
T 4eco_A 541 FGIRNQRDAQGNRTLREWPEGITLC-----PSLTQLQIGSNDIRKVNEKI 585 (636)
T ss_dssp EECCSCBCTTCCBCCCCCCTTGGGC-----SSCCEEECCSSCCCBCCSCC
T ss_pred EECCCCcccccCcccccChHHHhcC-----CCCCEEECCCCcCCccCHhH
Confidence 8884 4554 6788877765 68888899888888887764
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-39 Score=343.24 Aligned_cols=336 Identities=19% Similarity=0.216 Sum_probs=204.8
Q ss_pred cCCCcceEEecCCCCCCcCCccccCC-CCCcEEeccccccccccccccCCCCcccEEEeecCchh-hhhhh-hccCCCCc
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVL-KSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIR-ELSQS-LGQLALLS 93 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~lp~~-~~~l~~L~ 93 (443)
.+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+.+|..++.+++|++|++++|.++ .+|.. +.++++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 56778888888777666777766654 77888888777777777777777777777777777776 67754 77777777
Q ss_pred EEecCCCC----------CCC-CccEEEEeCCCCc-ccCccccC--CCCCCEEeccCCCCC--------CCCCcCEEEcc
Q 046017 94 ELELKNSS----------EFE-YLRVLRVEGAAIR-ELPESIGK--STLLSELELKNCSEL--------KLKSLRRIKMS 151 (443)
Q Consensus 94 ~L~ls~~~----------~l~-~L~~L~l~~n~~~-~lp~~l~~--l~~L~~L~l~~n~~~--------~l~~L~~L~l~ 151 (443)
+|++++|. .++ +|++|++++|.++ .+|..+.. +++|++|++++|.+. .+++|++|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 77777763 122 6777777776643 45555544 566666666666543 55666666666
Q ss_pred CCCCCCCCCCC----CCCccccc--cCcc-cccccc---------cccCCCCCcccCCcccCCcccceeecccccccccc
Q 046017 152 KCSNLKRFPKI----ASCNKVGI--TGIK-RLSSTL---------RLKNCSSLESLPSSLCMLKSLRFLETIACKKLERL 215 (443)
Q Consensus 152 ~~~~l~~~~~~----~~l~~L~l--~~l~-~l~~~l---------~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~ 215 (443)
+|.....+|.. .+++.|++ +.+. .+|..+ ...+|...+.+|..+..+++|++|++++|.+.+.+
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 65444444443 33444444 3332 222211 11123333355555666666666666666666666
Q ss_pred cccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCC-----------------------------
Q 046017 216 PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNE----------------------------- 266 (443)
Q Consensus 216 p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~----------------------------- 266 (443)
|.+++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTT
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccc
Confidence 666666666666666666666666666666666666666666655444432
Q ss_pred -----------------------------------------CCCCCCCceEEecCCCCc-ccChhccCCCCCCEEEccCC
Q 046017 267 -----------------------------------------LGNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNN 304 (443)
Q Consensus 267 -----------------------------------------l~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls~n 304 (443)
+..+++|+.|++++|+++ .+|..++.+++|+.|++++|
T Consensus 587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N 666 (768)
T 3rgz_A 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666 (768)
T ss_dssp CCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence 222345566666666665 55666666666666666666
Q ss_pred CCC-CCChhhhCCCCCCeeeCCCCCC-CccCcccccCCCCCcccccccccccCCC
Q 046017 305 NLK-RTPESLYQLSSLKYLKPFENNS-DRIPEYLRSSPTSIPSELRSLNLSVDSG 357 (443)
Q Consensus 305 ~l~-~lp~~l~~l~~L~~L~ls~n~l-~~lp~~~~~~~~~lp~~L~~L~l~~N~l 357 (443)
+++ .+|..++.+++|++||+++|++ +.+|..+..+ ++|++|++++|.+
T Consensus 667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l-----~~L~~L~ls~N~l 716 (768)
T 3rgz_A 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL-----TMLTEIDLSNNNL 716 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC-----CCCSEEECCSSEE
T ss_pred ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC-----CCCCEEECcCCcc
Confidence 666 5566666666666666666666 3566655554 4566666666644
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-38 Score=337.29 Aligned_cols=355 Identities=12% Similarity=0.144 Sum_probs=261.0
Q ss_pred CCCCCC--Ccc------------CCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEec-cccccccc--------
Q 046017 2 FPKIPS--CNI------------DGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQI-IDCKKFER-------- 58 (443)
Q Consensus 2 ~~~~~~--c~~------------~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L-~~n~~~~~-------- 58 (443)
+|..++ |+| .|+.|..-.+++.|+|+++.+.+.+|++++++++|++|+| ++|.+.+.
T Consensus 292 ~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~ 371 (876)
T 4ecn_A 292 TINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371 (876)
T ss_dssp SCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCC
T ss_pred cccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCchHHhccccceEeeeccccccccccccccccc
Confidence 344455 999 9999876678999999999988899999999999999999 66643322
Q ss_pred --------------------------------------------------------------------cccccCCCCccc
Q 046017 59 --------------------------------------------------------------------LLDELGNLETLL 70 (443)
Q Consensus 59 --------------------------------------------------------------------~p~~~~~l~~L~ 70 (443)
+|..++++++|+
T Consensus 372 ~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~ 451 (876)
T 4ecn_A 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQ 451 (876)
T ss_dssp CSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCC
T ss_pred ccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCC
Confidence 788899999999
Q ss_pred EEEeecCchhh------------------hhhhhc--cCCCCcEEecCCCC----------CCCCccEEEEeCCC-Ccc-
Q 046017 71 VLRVEGAAIRE------------------LSQSLG--QLALLSELELKNSS----------EFEYLRVLRVEGAA-IRE- 118 (443)
Q Consensus 71 ~L~l~~n~l~~------------------lp~~~~--~l~~L~~L~ls~~~----------~l~~L~~L~l~~n~-~~~- 118 (443)
+|++++|.++. +|..++ ++++|++|++++|. ++++|+.|++++|. ++.
T Consensus 452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~ 531 (876)
T 4ecn_A 452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531 (876)
T ss_dssp EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHH
T ss_pred EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccc
Confidence 99999999987 898877 99999999998873 56788888888887 664
Q ss_pred -cCccccCC-------CCCCEEeccCCCCC---------CCCCcCEEEccCCCCCCCCCCCC---CCccccc--cCcccc
Q 046017 119 -LPESIGKS-------TLLSELELKNCSEL---------KLKSLRRIKMSKCSNLKRFPKIA---SCNKVGI--TGIKRL 176 (443)
Q Consensus 119 -lp~~l~~l-------~~L~~L~l~~n~~~---------~l~~L~~L~l~~~~~l~~~~~~~---~l~~L~l--~~l~~l 176 (443)
+|..++.+ ++|++|++++|.+. .+++|++|++++|. +..+|... +++.|++ |.+..+
T Consensus 532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~l 610 (876)
T 4ecn_A 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEI 610 (876)
T ss_dssp HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCC
T ss_pred cchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccc
Confidence 77655544 48888888888654 56778888888864 44777433 4444555 555555
Q ss_pred ccccccc---------CCCCCcccCCcccCCcc--cceeeccccccccccccc---cc--CCCCcceeeccCccCCCCCC
Q 046017 177 SSTLRLK---------NCSSLESLPSSLCMLKS--LRFLETIACKKLERLPES---LG--QLALLCELKMIKCSSFESLP 240 (443)
Q Consensus 177 ~~~l~~~---------~~~~l~~lp~~~~~l~~--L~~L~ls~n~~~~~~p~~---l~--~l~~L~~L~ls~n~~~~~~p 240 (443)
|..+... ..+.+..+|..+..++. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.+. .+|
T Consensus 611 p~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp 689 (876)
T 4ecn_A 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFP 689 (876)
T ss_dssp CTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCC
T ss_pred hHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccC
Confidence 5432211 22345567766665543 788888887776655422 22 2347888888887766 555
Q ss_pred chh-hcCCCCCcEecccccccccCCCCCCC--------CCCCceEEecCCCCcccChhcc--CCCCCCEEEccCCCCCCC
Q 046017 241 SSL-CMLKSLTPLAIIDCKIFKRLPNELGN--------LKCLAALIVKGTAIREVPESLG--YLSSLAKLELSNNNLKRT 309 (443)
Q Consensus 241 ~~~-~~l~~L~~L~l~~n~~~~~~~~~l~~--------l~~L~~L~l~~n~l~~lp~~~~--~l~~L~~L~ls~n~l~~l 309 (443)
..+ ..+++|+.|++++|++. .+|..+.. +++|++|++++|+++.+|..+. .+++|+.|++++|+++.+
T Consensus 690 ~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l 768 (876)
T 4ecn_A 690 TELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768 (876)
T ss_dssp HHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC
T ss_pred HHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc
Confidence 554 36788888888888775 56654433 2378888888888888888776 788888888888888888
Q ss_pred ChhhhCCCCCCeeeCCC------CCC-CccCcccccCCCCCcccccccccccCCCCcccCCh
Q 046017 310 PESLYQLSSLKYLKPFE------NNS-DRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDL 364 (443)
Q Consensus 310 p~~l~~l~~L~~L~ls~------n~l-~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~ 364 (443)
|..+..+++|+.|++++ |++ +.+|..+..+ ++|++|++++|.++.+|..+
T Consensus 769 p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L-----~~L~~L~Ls~N~L~~Ip~~l 825 (876)
T 4ecn_A 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC-----PSLIQLQIGSNDIRKVDEKL 825 (876)
T ss_dssp CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC-----SSCCEEECCSSCCCBCCSCC
T ss_pred chhhhcCCCCCEEECCCCCCcccccccccChHHHhcC-----CCCCEEECCCCCCCccCHhh
Confidence 87888888888888866 554 6777777665 68888888888887777664
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.3e-36 Score=312.44 Aligned_cols=345 Identities=18% Similarity=0.145 Sum_probs=269.8
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEe
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELE 96 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ 96 (443)
.+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.++.+ |..|.++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 46899999999997666666899999999999999988777788899999999999999999876 78899999999999
Q ss_pred cCCCC----------CCCCccEEEEeCCCCc--ccCccccCCCCCCEEeccCCCCC-----------CC-----------
Q 046017 97 LKNSS----------EFEYLRVLRVEGAAIR--ELPESIGKSTLLSELELKNCSEL-----------KL----------- 142 (443)
Q Consensus 97 ls~~~----------~l~~L~~L~l~~n~~~--~lp~~l~~l~~L~~L~l~~n~~~-----------~l----------- 142 (443)
+++|. ++++|++|++++|.++ .+|..++++++|++|++++|.+. .+
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 98873 5689999999999977 47888999999999999988654 11
Q ss_pred -------------CCcCEEEccCCCCC-----------------------------------------------------
Q 046017 143 -------------KSLRRIKMSKCSNL----------------------------------------------------- 156 (443)
Q Consensus 143 -------------~~L~~L~l~~~~~l----------------------------------------------------- 156 (443)
.+|++|++++|...
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 13444444443210
Q ss_pred ---------------------------CCCCCC---CCCccccc--cCccccccc-------cccc--------------
Q 046017 157 ---------------------------KRFPKI---ASCNKVGI--TGIKRLSST-------LRLK-------------- 183 (443)
Q Consensus 157 ---------------------------~~~~~~---~~l~~L~l--~~l~~l~~~-------l~~~-------------- 183 (443)
+.+|.. .+++.|++ +.++.+|.. +...
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~ 350 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP 350 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCT
T ss_pred cccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCC
Confidence 111111 22333333 333333310 0000
Q ss_pred -------CCCCCccc---CCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCC-chhhcCCCCCcE
Q 046017 184 -------NCSSLESL---PSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLP-SSLCMLKSLTPL 252 (443)
Q Consensus 184 -------~~~~l~~l---p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p-~~~~~l~~L~~L 252 (443)
..+.+..+ |..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..+..+++|++|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 11222222 5667788888888888877554 66888999999999999999888777 678899999999
Q ss_pred ecccccccccCCCCCCCCCCCceEEecCCCCcc--cChhccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCeeeCCCCCC
Q 046017 253 AIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE--VPESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKYLKPFENNS 329 (443)
Q Consensus 253 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--lp~~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~L~ls~n~l 329 (443)
++++|.+.+..|..+..+++|++|++++|.++. +|..+..+++|++|++++|+++++ |..+..+++|++|++++|++
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 999999988889999999999999999999985 788899999999999999999966 56789999999999999999
Q ss_pred Ccc-CcccccCCCCCcccccccccccCCCCcccCChhhhh
Q 046017 330 DRI-PEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLS 368 (443)
Q Consensus 330 ~~l-p~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l~ 368 (443)
+.+ |..+..+ ++|++|++++|.++.+|..+..+.
T Consensus 510 ~~~~~~~~~~l-----~~L~~L~l~~N~l~~~p~~~~~l~ 544 (606)
T 3vq2_A 510 LFLDSSHYNQL-----YSLSTLDCSFNRIETSKGILQHFP 544 (606)
T ss_dssp SCEEGGGTTTC-----TTCCEEECTTSCCCCEESCGGGSC
T ss_pred CCcCHHHccCC-----CcCCEEECCCCcCcccCHhHhhhc
Confidence 766 6666655 799999999999999988866553
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.9e-37 Score=316.16 Aligned_cols=317 Identities=14% Similarity=0.154 Sum_probs=214.9
Q ss_pred CCccccCCCCCcEEeccccccccc-----------------cccccC--CCCcccEEEeecCchh-hhhhhhccCCCCcE
Q 046017 35 FPSSLCVLKSLRSLQIIDCKKFER-----------------LLDELG--NLETLLVLRVEGAAIR-ELSQSLGQLALLSE 94 (443)
Q Consensus 35 ~p~~~~~l~~L~~L~L~~n~~~~~-----------------~p~~~~--~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~ 94 (443)
+|..++++++|++|++++|.+.+. +|..++ ++++|++|++++|.+. .+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 444455555555555555554443 555555 5555555555555543 45555555555555
Q ss_pred EecCCCCC------------------CCCccEEEEeCCCCcccCc--cccCCCCCCEEeccCCCCC-------CCCCcCE
Q 046017 95 LELKNSSE------------------FEYLRVLRVEGAAIRELPE--SIGKSTLLSELELKNCSEL-------KLKSLRR 147 (443)
Q Consensus 95 L~ls~~~~------------------l~~L~~L~l~~n~~~~lp~--~l~~l~~L~~L~l~~n~~~-------~l~~L~~ 147 (443)
|++++|.. +++|++|++++|.++.+|. .++++++|++|++++|.+. .+++|++
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~ 357 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLAS 357 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESE
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCE
Confidence 55555531 1455555555555555555 5555555555555555433 3345555
Q ss_pred EEccCCCCCCCCCCC----CC-Cccccc--cCcccccccccc-----------cCCCCCcccCCccc-------CCcccc
Q 046017 148 IKMSKCSNLKRFPKI----AS-CNKVGI--TGIKRLSSTLRL-----------KNCSSLESLPSSLC-------MLKSLR 202 (443)
Q Consensus 148 L~l~~~~~l~~~~~~----~~-l~~L~l--~~l~~l~~~l~~-----------~~~~~l~~lp~~~~-------~l~~L~ 202 (443)
|++++| .++.+|.. .+ ++.|++ +.+..+|..+.. .+|...+.+|..+. .+++|+
T Consensus 358 L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~ 436 (636)
T 4eco_A 358 LNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436 (636)
T ss_dssp EECCSS-EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred EECCCC-ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence 555553 23344433 23 444444 444444433221 12333345566666 778999
Q ss_pred eeecccccccccccc-cccCCCCcceeeccCccCCCCCCchhhc-C-------CCCCcEecccccccccCCCCCC--CCC
Q 046017 203 FLETIACKKLERLPE-SLGQLALLCELKMIKCSSFESLPSSLCM-L-------KSLTPLAIIDCKIFKRLPNELG--NLK 271 (443)
Q Consensus 203 ~L~ls~n~~~~~~p~-~l~~l~~L~~L~ls~n~~~~~~p~~~~~-l-------~~L~~L~l~~n~~~~~~~~~l~--~l~ 271 (443)
+|++++|.+. .+|. .+..+++|++|++++|.+. .+|..... . ++|++|++++|++. .+|..+. .++
T Consensus 437 ~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 513 (636)
T 4eco_A 437 SINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP 513 (636)
T ss_dssp EEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT
T ss_pred EEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC
Confidence 9999998877 4554 4556999999999999887 66654433 2 29999999999996 7888887 999
Q ss_pred CCceEEecCCCCcccChhccCCCCCCEEEccC------CCCC-CCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCc
Q 046017 272 CLAALIVKGTAIREVPESLGYLSSLAKLELSN------NNLK-RTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIP 344 (443)
Q Consensus 272 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~------n~l~-~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp 344 (443)
+|++|++++|+++.+|..+..+++|+.|++++ |++. .+|..+..+++|++|++++|+++.+|..+ .
T Consensus 514 ~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~-------~ 586 (636)
T 4eco_A 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI-------T 586 (636)
T ss_dssp TCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC-------C
T ss_pred CcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH-------h
Confidence 99999999999999999999999999999954 5555 78999999999999999999999999863 2
Q ss_pred ccccccccccCCCCcccC
Q 046017 345 SELRSLNLSVDSGNSLNL 362 (443)
Q Consensus 345 ~~L~~L~l~~N~l~~l~~ 362 (443)
++|++|++++|.+..++.
T Consensus 587 ~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 587 PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp TTCCEEECCSCTTCEEEC
T ss_pred CcCCEEECcCCCCccccH
Confidence 699999999999988754
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.6e-36 Score=309.00 Aligned_cols=290 Identities=18% Similarity=0.128 Sum_probs=174.4
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEe
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELE 96 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ 96 (443)
.+++++|++++|.+.+..|.+|+++++|++|++++|.+.+..|.+|+++++|++|++++|.++.+ |..|.++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 35788999999886666677888899999999998888777788888899999999998888754 67888888999998
Q ss_pred cCCCC----------CCCCccEEEEeCCCCcccC-ccccCCCCCCEEeccCCCCC--------CCCCcC--EEEccCCCC
Q 046017 97 LKNSS----------EFEYLRVLRVEGAAIRELP-ESIGKSTLLSELELKNCSEL--------KLKSLR--RIKMSKCSN 155 (443)
Q Consensus 97 ls~~~----------~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~l~~n~~~--------~l~~L~--~L~l~~~~~ 155 (443)
+++|. .+++|++|++++|.++.++ ..+..+++|++|++++|.+. .+++|+ +|++++|..
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 88763 5678888888888877652 23445888888888888665 566666 677777543
Q ss_pred CCCCCCC---C----------------------------------------------------CCccccc--cCcccccc
Q 046017 156 LKRFPKI---A----------------------------------------------------SCNKVGI--TGIKRLSS 178 (443)
Q Consensus 156 l~~~~~~---~----------------------------------------------------~l~~L~l--~~l~~l~~ 178 (443)
....|.. . +++.+++ +.+..++.
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 3222211 0 1111222 22222221
Q ss_pred c-cccc--------CCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCc-hhhcCCC
Q 046017 179 T-LRLK--------NCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPS-SLCMLKS 248 (443)
Q Consensus 179 ~-l~~~--------~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~-~~~~l~~ 248 (443)
. +... ..+.+..+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 1 1000 2234456666666666666666666666555555555566666666665555443332 2444455
Q ss_pred CCcEecccccccccC--CCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCC
Q 046017 249 LTPLAIIDCKIFKRL--PNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLK 307 (443)
Q Consensus 249 L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~ 307 (443)
|++|++++|.+.+.. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|++.
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 555555555443322 33344444444444444444322 223333344444444444333
No 8
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.4e-36 Score=307.53 Aligned_cols=332 Identities=22% Similarity=0.212 Sum_probs=231.5
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcEEe
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSELE 96 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ 96 (443)
.++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|.+|+.+++|++|++++|.++.+|. .|+++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 3589999999998766667789999999999999998887777889999999999999999987764 488999999999
Q ss_pred cCCCC-----------CCCCccEEEEeCCC-CcccC-ccccCCCCCCEEeccCCCCC-----------------------
Q 046017 97 LKNSS-----------EFEYLRVLRVEGAA-IRELP-ESIGKSTLLSELELKNCSEL----------------------- 140 (443)
Q Consensus 97 ls~~~-----------~l~~L~~L~l~~n~-~~~lp-~~l~~l~~L~~L~l~~n~~~----------------------- 140 (443)
+++|. ++++|++|++++|. ++.+| ..+.++++|++|++++|.+.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 98863 45788899998887 67776 45777888888888877653
Q ss_pred ---------CCCCcCEEEccCCCCCCCCC-------CC-CCCccccc--cCccc-----cccc-----------------
Q 046017 141 ---------KLKSLRRIKMSKCSNLKRFP-------KI-ASCNKVGI--TGIKR-----LSST----------------- 179 (443)
Q Consensus 141 ---------~l~~L~~L~l~~~~~l~~~~-------~~-~~l~~L~l--~~l~~-----l~~~----------------- 179 (443)
.+++|++|++++|...+ ++ .. .+++.|++ +.+.. ++..
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~ 263 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDTNLAR-FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL 263 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESCBCTT-CCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEE
T ss_pred cccchhhHhhcccccEEEccCCcccc-ccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccc
Confidence 25677777777754332 21 11 33333333 11110 0000
Q ss_pred ---------------------------------------------------ccccCCCCCcccCCcc-cCCcccceeecc
Q 046017 180 ---------------------------------------------------LRLKNCSSLESLPSSL-CMLKSLRFLETI 207 (443)
Q Consensus 180 ---------------------------------------------------l~~~~~~~l~~lp~~~-~~l~~L~~L~ls 207 (443)
+.. ..+.++.+|..+ ..+++|++|+++
T Consensus 264 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l-~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 264 NGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV-ENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp ECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE-ESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred cccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe-ccCccccCCHHHHhcCccccEEEcc
Confidence 000 112233455544 357777777777
Q ss_pred ccccccccc---ccccCCCCcceeeccCccCCCCCC--chhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCC
Q 046017 208 ACKKLERLP---ESLGQLALLCELKMIKCSSFESLP--SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTA 282 (443)
Q Consensus 208 ~n~~~~~~p---~~l~~l~~L~~L~ls~n~~~~~~p--~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 282 (443)
+|.+.+.+| ..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|++. .+|..+..+++|++|++++|.
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSC
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCC
Confidence 777766553 235667777888887776654321 34667777888888887774 567777777778888888887
Q ss_pred CcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccC
Q 046017 283 IREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNL 362 (443)
Q Consensus 283 l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~ 362 (443)
++.+|..+ .++|++|++++|++++++ ..+++|++|++++|+++.+|.. .. .++|++|++++|.++.++.
T Consensus 422 l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~~-~~-----l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 422 IRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDA-SL-----FPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp CSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCG-GG-----CTTCCEEECCSSCCCCCCT
T ss_pred cccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCCc-cc-----CccCCEEecCCCccCCcCH
Confidence 77776544 257788888888777665 4677888888888888888863 22 2678888888888777754
Q ss_pred C
Q 046017 363 D 363 (443)
Q Consensus 363 ~ 363 (443)
.
T Consensus 491 ~ 491 (549)
T 2z81_A 491 G 491 (549)
T ss_dssp T
T ss_pred H
Confidence 3
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.1e-35 Score=300.86 Aligned_cols=374 Identities=19% Similarity=0.123 Sum_probs=298.4
Q ss_pred ccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcE
Q 046017 16 IERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSE 94 (443)
Q Consensus 16 ~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~ 94 (443)
..+++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..|..++.+++|++|++++|.++.+ |..+.++++|++
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 4688999999999998777888999999999999999998888899999999999999999999977 578999999999
Q ss_pred EecCCCC----------CCCCccEEEEeCCCCccc-CccccCCCCCC--EEeccCCCCC-------CCC-----------
Q 046017 95 LELKNSS----------EFEYLRVLRVEGAAIREL-PESIGKSTLLS--ELELKNCSEL-------KLK----------- 143 (443)
Q Consensus 95 L~ls~~~----------~l~~L~~L~l~~n~~~~l-p~~l~~l~~L~--~L~l~~n~~~-------~l~----------- 143 (443)
|++++|. .+++|++|++++|.++.+ |..+..+++|+ +|++++|.+. ...
T Consensus 134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred EECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCch
Confidence 9999873 358899999999998877 45578889998 8888888654 111
Q ss_pred -----------------------------------------CcCEEEccCCCCCCCCCCC-----CCCccccc--cCccc
Q 046017 144 -----------------------------------------SLRRIKMSKCSNLKRFPKI-----ASCNKVGI--TGIKR 175 (443)
Q Consensus 144 -----------------------------------------~L~~L~l~~~~~l~~~~~~-----~~l~~L~l--~~l~~ 175 (443)
+|++|++++| .++.++.. .+++.|++ +.+..
T Consensus 214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 292 (606)
T 3t6q_A 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSE 292 (606)
T ss_dssp CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCSC
T ss_pred hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecC-ccCccCHHHhccccCCCEEeccCCccCC
Confidence 5667777775 44445442 56677777 77778
Q ss_pred cccccccc--------CCCCCcc-cCCcccCCcccceeecccccccccccc-cccCCCCcceeeccCccCCCCC--Cchh
Q 046017 176 LSSTLRLK--------NCSSLES-LPSSLCMLKSLRFLETIACKKLERLPE-SLGQLALLCELKMIKCSSFESL--PSSL 243 (443)
Q Consensus 176 l~~~l~~~--------~~~~l~~-lp~~~~~l~~L~~L~ls~n~~~~~~p~-~l~~l~~L~~L~ls~n~~~~~~--p~~~ 243 (443)
+|..+... ..+.+.. .|..+..+++|++|++++|...+.+|. .+..+++|++|++++|.+.+.. +..+
T Consensus 293 lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence 87654322 2233333 466789999999999999988877665 4889999999999999887655 7788
Q ss_pred hcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCccc-C-hhccCCCCCCEEEccCCCCCCC-ChhhhCCCCCC
Q 046017 244 CMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV-P-ESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLK 320 (443)
Q Consensus 244 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p-~~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~ 320 (443)
..+++|++|++++|++.+..|..+..+++|++|++++|.++.. + ..+..+++|++|++++|.++.. |..+..+++|+
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 452 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC
T ss_pred ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC
Confidence 9999999999999999888888999999999999999999854 3 3488999999999999999965 57789999999
Q ss_pred eeeCCCCCCCc--cC--cccccCCCCCcccccccccccCCCCcc-cCChhhhhhHHHhccccccc--------cccccee
Q 046017 321 YLKPFENNSDR--IP--EYLRSSPTSIPSELRSLNLSVDSGNSL-NLDLNKLSEIVKEGWMKQSF--------HGQSWIK 387 (443)
Q Consensus 321 ~L~ls~n~l~~--lp--~~~~~~~~~lp~~L~~L~l~~N~l~~l-~~~~~~l~~l~~~~~~~~~~--------~~~~~~~ 387 (443)
+|++++|+++. +| ..+..+ ++|++|++++|.++.+ |..+..++.+...+...+.+ .....+
T Consensus 453 ~L~L~~n~l~~~~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L- 526 (606)
T 3t6q_A 453 HLNLQGNHFPKGNIQKTNSLQTL-----GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI- 526 (606)
T ss_dssp EEECTTCBCGGGEECSSCGGGGC-----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-
T ss_pred EEECCCCCCCccccccchhhccC-----CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-
Confidence 99999999964 23 345444 7999999999998887 56666666654444333322 223334
Q ss_pred EEEecCCCC
Q 046017 388 SMYFPGNEI 396 (443)
Q Consensus 388 ~~~l~g~~i 396 (443)
.+++.+|.+
T Consensus 527 ~L~L~~N~l 535 (606)
T 3t6q_A 527 YLNLASNHI 535 (606)
T ss_dssp EEECCSSCC
T ss_pred EEECcCCcc
Confidence 666677654
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-35 Score=295.57 Aligned_cols=324 Identities=18% Similarity=0.179 Sum_probs=230.0
Q ss_pred CCcceEEecCCCCCCcCCccccCCCCCcEEecccccccccc-ccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEe
Q 046017 19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERL-LDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELE 96 (443)
Q Consensus 19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ 96 (443)
++|++|++++|.+.+..|..|+++++|++|++++|.+.+.+ +..|..+++|++|++++|.++.+ |..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 68999999999977777888999999999999999887665 56799999999999999999865 78899999999999
Q ss_pred cCCCC------------CCCCccEEEEeCCCCccc-Ccc-ccCCCCCCEEeccCCCCC----------CCCCcCEEEccC
Q 046017 97 LKNSS------------EFEYLRVLRVEGAAIREL-PES-IGKSTLLSELELKNCSEL----------KLKSLRRIKMSK 152 (443)
Q Consensus 97 ls~~~------------~l~~L~~L~l~~n~~~~l-p~~-l~~l~~L~~L~l~~n~~~----------~l~~L~~L~l~~ 152 (443)
+++|. .+++|++|++++|.++.+ |.. +.++++|++|++++|.+. ...+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 99873 468999999999998877 554 788999999999999765 226788888888
Q ss_pred CCCCCCCCCC-------------CCCccccccCcccccccccccCCCCCcccCCcccC---Ccccceeeccccccccccc
Q 046017 153 CSNLKRFPKI-------------ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCM---LKSLRFLETIACKKLERLP 216 (443)
Q Consensus 153 ~~~l~~~~~~-------------~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~---l~~L~~L~ls~n~~~~~~p 216 (443)
|. +..++.. .+++.|++. +|...+..|..+.. .++|+.|++++|...+...
T Consensus 190 n~-l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls------------~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 190 IT-LQDMNEYWLGWEKCGNPFKNTSITTLDLS------------GNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp CB-CTTCSTTCTTHHHHCCTTTTCEEEEEECT------------TSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred Cc-ccccchhhccccccccccccceeeeEecC------------CCcccccchhhhhccccccceeeEeecccccccccc
Confidence 53 3333321 122223330 11111122222221 2455555555543322110
Q ss_pred ----------cccc--CCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCc
Q 046017 217 ----------ESLG--QLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR 284 (443)
Q Consensus 217 ----------~~l~--~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 284 (443)
..+. ..++|++|++++|.+.+..|..+..+++|++|++++|++.+..|..+..+++|++|++++|.++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 0111 1256777777777777777777777777888888777777666667777777888888877777
Q ss_pred cc-ChhccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCeeeCCCCCCCccCcccc-cCCCCCcccccccccccCCCCcc
Q 046017 285 EV-PESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKYLKPFENNSDRIPEYLR-SSPTSIPSELRSLNLSVDSGNSL 360 (443)
Q Consensus 285 ~l-p~~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~L~ls~n~l~~lp~~~~-~~~~~lp~~L~~L~l~~N~l~~l 360 (443)
.+ |..+..+++|++|++++|+++.+ |..+..+++|++|++++|+++.+|.... .+ ++|++|++++|.++.-
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL-----TSLQKIWLHTNPWDCS 410 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSSCBCCC
T ss_pred CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC-----CcccEEEccCCCcccC
Confidence 55 45567777788888888777765 5667777778888887777777776442 22 5777778877766543
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.2e-35 Score=312.11 Aligned_cols=317 Identities=16% Similarity=0.151 Sum_probs=235.8
Q ss_pred CCccccCCCCCcEEecccccccc-----------------ccccccC--CCCcccEEEeecCchh-hhhhhhccCCCCcE
Q 046017 35 FPSSLCVLKSLRSLQIIDCKKFE-----------------RLLDELG--NLETLLVLRVEGAAIR-ELSQSLGQLALLSE 94 (443)
Q Consensus 35 ~p~~~~~l~~L~~L~L~~n~~~~-----------------~~p~~~~--~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~ 94 (443)
+|..++++++|++|+|++|.+.+ .+|..++ ++++|++|++++|.+. .+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 66667777777777777777666 2677766 7777777777777654 66777777777777
Q ss_pred EecCCCCC-------------------CCCccEEEEeCCCCcccCc--cccCCCCCCEEeccCCCCC------CCCCcCE
Q 046017 95 LELKNSSE-------------------FEYLRVLRVEGAAIRELPE--SIGKSTLLSELELKNCSEL------KLKSLRR 147 (443)
Q Consensus 95 L~ls~~~~-------------------l~~L~~L~l~~n~~~~lp~--~l~~l~~L~~L~l~~n~~~------~l~~L~~ 147 (443)
|++++|.. +++|+.|++++|.++.+|. .+.++++|++|++++|.+. .+++|++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~ 599 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTD 599 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceE
Confidence 77777641 1267777777777777777 6777777777777777554 5567777
Q ss_pred EEccCCCCCCCCCCC----CC-Cccccc--cCccccccccccc-----------CCCCCcccC---Cccc--CCccccee
Q 046017 148 IKMSKCSNLKRFPKI----AS-CNKVGI--TGIKRLSSTLRLK-----------NCSSLESLP---SSLC--MLKSLRFL 204 (443)
Q Consensus 148 L~l~~~~~l~~~~~~----~~-l~~L~l--~~l~~l~~~l~~~-----------~~~~l~~lp---~~~~--~l~~L~~L 204 (443)
|++++|. +..+|.. .+ ++.|++ |.+..+|..+... +|...+.+| ..+. .+++|++|
T Consensus 600 L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 600 LKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp EECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred EECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence 7777754 4466654 34 666666 5566666443222 222222222 2233 34589999
Q ss_pred ecccccccccccccc-cCCCCcceeeccCccCCCCCCchhhcC--------CCCCcEecccccccccCCCCCC--CCCCC
Q 046017 205 ETIACKKLERLPESL-GQLALLCELKMIKCSSFESLPSSLCML--------KSLTPLAIIDCKIFKRLPNELG--NLKCL 273 (443)
Q Consensus 205 ~ls~n~~~~~~p~~l-~~l~~L~~L~ls~n~~~~~~p~~~~~l--------~~L~~L~l~~n~~~~~~~~~l~--~l~~L 273 (443)
++++|.+. .+|..+ ..+++|+.|++++|.+. .+|..+... ++|++|++++|++. .+|..+. .+++|
T Consensus 679 ~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 679 TLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755 (876)
T ss_dssp ECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred EccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence 99998877 566554 48999999999999876 666654432 39999999999986 7888887 99999
Q ss_pred ceEEecCCCCcccChhccCCCCCCEEEccC------CCCC-CCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccc
Q 046017 274 AALIVKGTAIREVPESLGYLSSLAKLELSN------NNLK-RTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSE 346 (443)
Q Consensus 274 ~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~------n~l~-~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~ 346 (443)
+.|++++|.++.+|..+..+++|+.|++++ |++. .+|..+..+++|++|++++|+++.+|..+ +++
T Consensus 756 ~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l-------~~~ 828 (876)
T 4ecn_A 756 SNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL-------TPQ 828 (876)
T ss_dssp CEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC-------CSS
T ss_pred CEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhh-------cCC
Confidence 999999999999999999999999999987 5555 78889999999999999999999999864 269
Q ss_pred ccccccccCCCCcccC
Q 046017 347 LRSLNLSVDSGNSLNL 362 (443)
Q Consensus 347 L~~L~l~~N~l~~l~~ 362 (443)
|+.|++++|.+..++.
T Consensus 829 L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 829 LYILDIADNPNISIDV 844 (876)
T ss_dssp SCEEECCSCTTCEEEC
T ss_pred CCEEECCCCCCCccCh
Confidence 9999999999888754
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=294.35 Aligned_cols=117 Identities=17% Similarity=0.110 Sum_probs=71.6
Q ss_pred CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecC
Q 046017 19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELK 98 (443)
Q Consensus 19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls 98 (443)
++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..|+++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 5677777777765544455677777777777777776666666777777777777777777766654 56666666666
Q ss_pred CCC-----------CCCCccEEEEeCCCCcccCccccCCCCC--CEEeccCCCC
Q 046017 99 NSS-----------EFEYLRVLRVEGAAIRELPESIGKSTLL--SELELKNCSE 139 (443)
Q Consensus 99 ~~~-----------~l~~L~~L~l~~n~~~~lp~~l~~l~~L--~~L~l~~n~~ 139 (443)
+|. .+++|++|++++|.++. ..+..+++| ++|++++|.+
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred CCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 542 23455555555555443 223444444 5555555543
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-34 Score=304.47 Aligned_cols=343 Identities=20% Similarity=0.150 Sum_probs=229.5
Q ss_pred CccCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEecccccccccc-ccccCCCCcccEEEeecCchhhh-hhh
Q 046017 8 CNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERL-LDELGNLETLLVLRVEGAAIREL-SQS 85 (443)
Q Consensus 8 c~~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~l~~n~l~~l-p~~ 85 (443)
++|..+.. ..+++++|++++|.+.+..|..|.++++|++|++++|...+.+ |.+|+++++|++|++++|.++.+ |..
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 66777877 6789999999999977777889999999999999999777766 78899999999999999999965 789
Q ss_pred hccCCCCcEEecCCCC------------CCCCccEEEEeCCCCcccC--ccccCCCCCCEEeccCCCCC--------CC-
Q 046017 86 LGQLALLSELELKNSS------------EFEYLRVLRVEGAAIRELP--ESIGKSTLLSELELKNCSEL--------KL- 142 (443)
Q Consensus 86 ~~~l~~L~~L~ls~~~------------~l~~L~~L~l~~n~~~~lp--~~l~~l~~L~~L~l~~n~~~--------~l- 142 (443)
|.++++|++|++++|. .+++|++|++++|.++.++ ..++++++|++|++++|.+. .+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 9999999999998863 5689999999999987663 56899999999999999764 22
Q ss_pred -CCcCEEEccCCCCCCCCCCC-C---------CCccccc--cCcc-ccccccc---------------------------
Q 046017 143 -KSLRRIKMSKCSNLKRFPKI-A---------SCNKVGI--TGIK-RLSSTLR--------------------------- 181 (443)
Q Consensus 143 -~~L~~L~l~~~~~l~~~~~~-~---------~l~~L~l--~~l~-~l~~~l~--------------------------- 181 (443)
++|+.|++++|......|.. . .++.|++ +.+. ..+..+.
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 77888888887655544432 1 2455555 3222 1111110
Q ss_pred --------------------ccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCc
Q 046017 182 --------------------LKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPS 241 (443)
Q Consensus 182 --------------------~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~ 241 (443)
..++......|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|.
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 332 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence 001111122244566666777777777666666666666677777777777666666566
Q ss_pred hhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh----------
Q 046017 242 SLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE---------- 311 (443)
Q Consensus 242 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~---------- 311 (443)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.++. +++|+.|++++|+++.+|.
T Consensus 333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~l~~~~~~l~~L~l 408 (844)
T 3j0a_A 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHL 408 (844)
T ss_dssp SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCCCCCCCTTCCEEEC
T ss_pred HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCcccccccccccceeec
Confidence 66667777777777776655444556666677777776666654432 2333333333333332221
Q ss_pred ------------hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017 312 ------------SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 312 ------------~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
.+..+++|++|++++|+++.++...... -.++|++|++++|.++
T Consensus 409 s~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS---ENPSLEQLFLGENMLQ 464 (844)
T ss_dssp CSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSC---SCTTCCBCEEESCCCS
T ss_pred ccCccccCchhhhhhcCCccceeeCCCCcccccccccccc---cCCccccccCCCCccc
Confidence 2335666677777776665544321100 1245555555555443
No 14
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.7e-34 Score=289.15 Aligned_cols=336 Identities=18% Similarity=0.169 Sum_probs=224.3
Q ss_pred ceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecCCC
Q 046017 22 CGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELKNS 100 (443)
Q Consensus 22 ~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~~ 100 (443)
++|++++|+ ++.+|..+. ++|++|++++|.+.+..|..|..+++|++|++++|.++.+ |..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~-l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNG-LIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSC-CSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCC-ccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 689999998 457887665 8999999999998877778899999999999999999966 689999999999999997
Q ss_pred C-------CCCCccEEEEeCCCCcc--cCccccCCCCCCEEeccCCCCC-----CCCCc--CEEEccCCCC--CCCCCCC
Q 046017 101 S-------EFEYLRVLRVEGAAIRE--LPESIGKSTLLSELELKNCSEL-----KLKSL--RRIKMSKCSN--LKRFPKI 162 (443)
Q Consensus 101 ~-------~l~~L~~L~l~~n~~~~--lp~~l~~l~~L~~L~l~~n~~~-----~l~~L--~~L~l~~~~~--l~~~~~~ 162 (443)
. .+++|++|++++|.++. +|..++++++|++|++++|.+. .+++| ++|++++|.. ....|..
T Consensus 80 ~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 80 KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp CCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred ceeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeeccccccccccccc
Confidence 4 67899999999999876 5788999999999999999765 66777 9999999766 3444443
Q ss_pred -CCCc--------------------------c---ccc--cC----ccccccccc-ccCCCCCcc---------------
Q 046017 163 -ASCN--------------------------K---VGI--TG----IKRLSSTLR-LKNCSSLES--------------- 190 (443)
Q Consensus 163 -~~l~--------------------------~---L~l--~~----l~~l~~~l~-~~~~~~l~~--------------- 190 (443)
..++ . +++ +. +..++..+. ......++.
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~ 239 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHH
Confidence 3322 1 111 10 000000000 000000000
Q ss_pred cCCcccCCcccceeecccccccccccccc-----cCCCCcceeeccCccCCCCCC-ch----------------------
Q 046017 191 LPSSLCMLKSLRFLETIACKKLERLPESL-----GQLALLCELKMIKCSSFESLP-SS---------------------- 242 (443)
Q Consensus 191 lp~~~~~l~~L~~L~ls~n~~~~~~p~~l-----~~l~~L~~L~ls~n~~~~~~p-~~---------------------- 242 (443)
++..+ ..++|++|++++|.+.+.+|..+ +.++.|+.+++++|.+ .+| ..
T Consensus 240 ~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 240 ILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccc
Confidence 00000 12356666666666665666555 5555555555555443 223 11
Q ss_pred ---hhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcc---cChhccCCCCCCEEEccCCCCCC-CChh-hh
Q 046017 243 ---LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE---VPESLGYLSSLAKLELSNNNLKR-TPES-LY 314 (443)
Q Consensus 243 ---~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~---lp~~~~~l~~L~~L~ls~n~l~~-lp~~-l~ 314 (443)
+..+++|++|++++|++.+..|..+..+++|++|++++|+++. +|..+..+++|++|++++|+++. +|.. +.
T Consensus 317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 1456677777777777766667777777777777777777763 34556777777777777777775 6643 56
Q ss_pred CCCCCCeeeCCCCCC-CccCcccccCCCCCcccccccccccCCCCcccCChhhhhhH
Q 046017 315 QLSSLKYLKPFENNS-DRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLSEI 370 (443)
Q Consensus 315 ~l~~L~~L~ls~n~l-~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l~~l 370 (443)
.+++|++|++++|++ +.+|.. +|++|++|++++|.++.+|..+..++.+
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~-------l~~~L~~L~Ls~N~l~~ip~~~~~l~~L 446 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRC-------LPPRIKVLDLHSNKIKSIPKQVVKLEAL 446 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGS-------CCTTCCEEECCSSCCCCCCGGGGGCTTC
T ss_pred cCccCCEEECcCCCCCcchhhh-------hcccCCEEECCCCcccccchhhhcCCCC
Confidence 667777777777766 333332 3356777777777766666655444444
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.5e-34 Score=292.40 Aligned_cols=123 Identities=21% Similarity=0.210 Sum_probs=108.0
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEe
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELE 96 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ 96 (443)
.+++++|++++|.+.+..+.+|.++++|++|++++|.+.+..|..|+++++|++|++++|.++.+| ..|.++++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 468999999999976666678999999999999999877777788999999999999999998776 7899999999999
Q ss_pred cCCCC----------CCCCccEEEEeCCCCcc--cCccccCCCCCCEEeccCCCCC
Q 046017 97 LKNSS----------EFEYLRVLRVEGAAIRE--LPESIGKSTLLSELELKNCSEL 140 (443)
Q Consensus 97 ls~~~----------~l~~L~~L~l~~n~~~~--lp~~l~~l~~L~~L~l~~n~~~ 140 (443)
+++|. .+++|++|++++|.++. +|..+.++++|++|++++|.+.
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc
Confidence 99863 56899999999999775 6889999999999999999754
No 16
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.1e-34 Score=290.66 Aligned_cols=135 Identities=21% Similarity=0.196 Sum_probs=80.0
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEe
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELE 96 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ 96 (443)
+...+++++++++ ++.+|..+. ++|++|++++|.+.+..|..|+++++|++|++++|.++.+ |..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~-L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRN-LTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSC-CCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCC-CccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3344666666665 334555443 5666666666665555555666666666666666666654 45566666666666
Q ss_pred cCCCC-------CCCCccEEEEeCCCCcccC--ccccCCCCCCEEeccCCCCC-----CCCCc--CEEEccCCCC
Q 046017 97 LKNSS-------EFEYLRVLRVEGAAIRELP--ESIGKSTLLSELELKNCSEL-----KLKSL--RRIKMSKCSN 155 (443)
Q Consensus 97 ls~~~-------~l~~L~~L~l~~n~~~~lp--~~l~~l~~L~~L~l~~n~~~-----~l~~L--~~L~l~~~~~ 155 (443)
+++|. .+++|++|++++|.++.+| ..++++++|++|++++|.+. .+++| ++|++++|..
T Consensus 107 Ls~N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 107 VSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CTTSCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred CCCCcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 66653 4566666666666666543 55666677777777666543 33344 6666666543
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.2e-34 Score=295.48 Aligned_cols=367 Identities=16% Similarity=0.126 Sum_probs=276.0
Q ss_pred CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecC
Q 046017 20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELK 98 (443)
Q Consensus 20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls 98 (443)
.-++++.++++ ++.+|..+. +++++|++++|.+.+..+..|+++++|++|++++|.++.+ |..|.++++|++|+++
T Consensus 12 ~~~~~~c~~~~-l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 12 PNITYQCMDQK-LSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTTEEECTTSC-CSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCceEccCCC-cccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 34678999877 677887554 7999999999998877777999999999999999999977 5789999999999999
Q ss_pred CCC----------CCCCccEEEEeCCCCcccC-ccccCCCCCCEEeccCCCCC---------CCCCcCEEEccCCCCCCC
Q 046017 99 NSS----------EFEYLRVLRVEGAAIRELP-ESIGKSTLLSELELKNCSEL---------KLKSLRRIKMSKCSNLKR 158 (443)
Q Consensus 99 ~~~----------~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~l~~n~~~---------~l~~L~~L~l~~~~~l~~ 158 (443)
+|. ++++|++|++++|.++.++ ..++++++|++|++++|.+. ++++|++|++++|.....
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 873 6799999999999998886 67899999999999999764 688999999999744332
Q ss_pred CCCC-CC---Cc----cccc--cCcccccccc------------------------------------------------
Q 046017 159 FPKI-AS---CN----KVGI--TGIKRLSSTL------------------------------------------------ 180 (443)
Q Consensus 159 ~~~~-~~---l~----~L~l--~~l~~l~~~l------------------------------------------------ 180 (443)
.+.. .. ++ .+++ +.+..++...
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 2221 11 11 1222 2222111100
Q ss_pred ----------------------------------------------------------------cccCCCCCcccCC---
Q 046017 181 ----------------------------------------------------------------RLKNCSSLESLPS--- 193 (443)
Q Consensus 181 ----------------------------------------------------------------~~~~~~~l~~lp~--- 193 (443)
...+|. ++.+|.
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~-l~~lp~~~l 327 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ-LKQFPTLDL 327 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCC-CSSCCCCCC
T ss_pred ccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEccccc-CcccccCCC
Confidence 000111 122231
Q ss_pred -----------------cccCCcccceeeccccccccc--ccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEec
Q 046017 194 -----------------SLCMLKSLRFLETIACKKLER--LPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAI 254 (443)
Q Consensus 194 -----------------~~~~l~~L~~L~ls~n~~~~~--~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l 254 (443)
.+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+.+ +|..+..+++|++|++
T Consensus 328 ~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDF 406 (606)
T ss_dssp SSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEEC
T ss_pred CccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeEC
Confidence 123445666666666655544 36778889999999999988654 6688899999999999
Q ss_pred ccccccccCC-CCCCCCCCCceEEecCCCCc-ccChhccCCCCCCEEEccCCCCCC--CChhhhCCCCCCeeeCCCCCCC
Q 046017 255 IDCKIFKRLP-NELGNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNNNLKR--TPESLYQLSSLKYLKPFENNSD 330 (443)
Q Consensus 255 ~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls~n~l~~--lp~~l~~l~~L~~L~ls~n~l~ 330 (443)
++|.+.+..+ ..+..+++|++|++++|.++ ..|..+..+++|++|++++|++.. +|..+..+++|++|++++|+++
T Consensus 407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (606)
T 3vq2_A 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486 (606)
T ss_dssp TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC
Confidence 9999988777 67899999999999999998 467789999999999999999996 6888999999999999999997
Q ss_pred ccC-cccccCCCCCcccccccccccCCCCcc-cCChhhhhhHHHhcccccccc-------ccc-ceeEEEecCCCC
Q 046017 331 RIP-EYLRSSPTSIPSELRSLNLSVDSGNSL-NLDLNKLSEIVKEGWMKQSFH-------GQS-WIKSMYFPGNEI 396 (443)
Q Consensus 331 ~lp-~~~~~~~~~lp~~L~~L~l~~N~l~~l-~~~~~~l~~l~~~~~~~~~~~-------~~~-~~~~~~l~g~~i 396 (443)
.++ ..+..+ ++|++|++++|.++.+ |..+..++.+...+...+.+. ... .++.+++.||++
T Consensus 487 ~~~~~~~~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 487 QISWGVFDTL-----HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECTTTTTTC-----TTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred ccChhhhccc-----ccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCc
Confidence 765 445554 7999999999998887 666666666544443333322 111 246666766644
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.7e-34 Score=292.44 Aligned_cols=342 Identities=18% Similarity=0.139 Sum_probs=207.8
Q ss_pred cCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccC
Q 046017 10 IDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQL 89 (443)
Q Consensus 10 ~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l 89 (443)
+.++...-.+++++|++++|.+.+..|.+|.++++|++|++++|.+.+..|.+|+.+++|++|++++|.++.+|.. .+
T Consensus 43 L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l 120 (562)
T 3a79_B 43 LTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PM 120 (562)
T ss_dssp CCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CC
T ss_pred CccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cc
Confidence 3344433457999999999997666667899999999999999998887889999999999999999999999977 89
Q ss_pred CCCcEEecCCCC-----------CCCCccEEEEeCCCCcccCccccCCCCC--CEEeccCCCC--C-----CCCCcC---
Q 046017 90 ALLSELELKNSS-----------EFEYLRVLRVEGAAIRELPESIGKSTLL--SELELKNCSE--L-----KLKSLR--- 146 (443)
Q Consensus 90 ~~L~~L~ls~~~-----------~l~~L~~L~l~~n~~~~lp~~l~~l~~L--~~L~l~~n~~--~-----~l~~L~--- 146 (443)
++|++|++++|. ++++|++|++++|.++.. .+..+++| ++|++++|.+ . .+..+.
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~ 198 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV 198 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcce
Confidence 999999999873 568999999999998753 35666666 9999999976 2 222222
Q ss_pred -EEEccCCCCCCCCCCC--CCCcc---ccc--cC--ccccccccccc-CCC---------------CCcccCCcccCCcc
Q 046017 147 -RIKMSKCSNLKRFPKI--ASCNK---VGI--TG--IKRLSSTLRLK-NCS---------------SLESLPSSLCMLKS 200 (443)
Q Consensus 147 -~L~l~~~~~l~~~~~~--~~l~~---L~l--~~--l~~l~~~l~~~-~~~---------------~l~~lp~~~~~l~~ 200 (443)
.+++++|.....++.. ..++. +++ +. ...++..+... ... .+..++..+ ..++
T Consensus 199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~ 277 (562)
T 3a79_B 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRP 277 (562)
T ss_dssp EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSS
T ss_pred EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hccc
Confidence 4577777666655543 33333 333 11 00000000000 000 000011101 1124
Q ss_pred cceeecccccccccccccc-----------------------------------------------------cCCCCcce
Q 046017 201 LRFLETIACKKLERLPESL-----------------------------------------------------GQLALLCE 227 (443)
Q Consensus 201 L~~L~ls~n~~~~~~p~~l-----------------------------------------------------~~l~~L~~ 227 (443)
|++|++++|.+.+.+|..+ ..+++|++
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~ 357 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred ccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence 4444444444443333322 34555566
Q ss_pred eeccCccCCCCCCchhhcCCCCCcEecccccccc--cCCCCCCCCCCCceEEecCCCCcc-cChh-ccCCCCCCEEEccC
Q 046017 228 LKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFK--RLPNELGNLKCLAALIVKGTAIRE-VPES-LGYLSSLAKLELSN 303 (443)
Q Consensus 228 L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~-lp~~-~~~l~~L~~L~ls~ 303 (443)
|++++|.+.+.+|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|.++. +|.. +..+++|++|++++
T Consensus 358 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp EECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred EECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 6666655555555555555666666666655543 222345555566666666665554 4432 44555666666666
Q ss_pred CCCCC-CChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCC
Q 046017 304 NNLKR-TPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLD 363 (443)
Q Consensus 304 n~l~~-lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~ 363 (443)
|++++ +|..+. ++|++|++++|+++.+|..++.+ ++|++|++++|.++.+|..
T Consensus 438 n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l-----~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 438 NMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHL-----QALQELNVASNQLKSVPDG 491 (562)
T ss_dssp SCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSS-----CCCSEEECCSSCCCCCCTT
T ss_pred CCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCC-----CCCCEEECCCCCCCCCCHH
Confidence 65542 222221 45666666666666666555543 4566666666666655554
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.7e-33 Score=293.32 Aligned_cols=327 Identities=22% Similarity=0.158 Sum_probs=270.5
Q ss_pred CCcceEEecCCCCCCcCCccccCCCC--CcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEE
Q 046017 19 PCSCGLRLKNCSSLESFPSSLCVLKS--LRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSEL 95 (443)
Q Consensus 19 ~~L~~L~ls~~~~~~~~p~~~~~l~~--L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L 95 (443)
++|+.|++++|.+.+..|..+..++. |++|++++|.+.+..|..++.+++|++|++++|.++.+ |..+..+++|++|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 67899999999877777888887755 99999999998888888899999999999999999854 5789999999999
Q ss_pred ecCCC-------------------CCCCCccEEEEeCCCCcccC-ccccCCCCCCEEeccCCCCC------------CCC
Q 046017 96 ELKNS-------------------SEFEYLRVLRVEGAAIRELP-ESIGKSTLLSELELKNCSEL------------KLK 143 (443)
Q Consensus 96 ~ls~~-------------------~~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~l~~n~~~------------~l~ 143 (443)
+++++ ..+++|++|++++|.++.++ ..+.++++|++|++++|... ..+
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 99753 35689999999999988774 45788999999999998532 236
Q ss_pred CcCEEEccCCCCCCCCCCC----CCCccccc--cCcccccccccccCCCCCcccC-CcccCCcccceeeccccccccccc
Q 046017 144 SLRRIKMSKCSNLKRFPKI----ASCNKVGI--TGIKRLSSTLRLKNCSSLESLP-SSLCMLKSLRFLETIACKKLERLP 216 (443)
Q Consensus 144 ~L~~L~l~~~~~l~~~~~~----~~l~~L~l--~~l~~l~~~l~~~~~~~l~~lp-~~~~~l~~L~~L~ls~n~~~~~~p 216 (443)
+|+.|++++|......|.. .+++.|++ +.+. +.+| ..+..+++|++|++++|.+.+..+
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG--------------QELTGQEWRGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE--------------EECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc--------------cccCcccccCcccccEEecCCCCcceeCh
Confidence 8999999997554443433 44555655 3222 2344 457889999999999999888888
Q ss_pred ccccCCCCcceeeccCccCC--CCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccCh------
Q 046017 217 ESLGQLALLCELKMIKCSSF--ESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE------ 288 (443)
Q Consensus 217 ~~l~~l~~L~~L~ls~n~~~--~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~------ 288 (443)
..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++.+..+..+..+++|++|++++|.++.++.
T Consensus 448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 527 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS
T ss_pred hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC
Confidence 88999999999999998765 5788889999999999999999987666778999999999999999986532
Q ss_pred ---hccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCC
Q 046017 289 ---SLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLD 363 (443)
Q Consensus 289 ---~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~ 363 (443)
.+..+++|++|++++|+++.+|. .+..+++|++|++++|+++.+|...+.. + ++|++|++++|.++.++..
T Consensus 528 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~---l-~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN---Q-VSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---C-TTCCEEECTTSCCCBCCHH
T ss_pred cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC---C-CCCCEEECCCCcCCccChh
Confidence 26788999999999999999985 5899999999999999999999865432 1 6999999999999887553
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=288.02 Aligned_cols=338 Identities=18% Similarity=0.181 Sum_probs=200.4
Q ss_pred ccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcE
Q 046017 16 IERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSE 94 (443)
Q Consensus 16 ~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~ 94 (443)
..+++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..|..|+.+++|++|++++|.++.++. .++++++|++
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence 356778888888877555555667778888888888777666555667777777777777777766653 4666677777
Q ss_pred EecCCCC-----------CCCCccEEEEeCCCCcccC-ccccCCCC---------------------------CCEEecc
Q 046017 95 LELKNSS-----------EFEYLRVLRVEGAAIRELP-ESIGKSTL---------------------------LSELELK 135 (443)
Q Consensus 95 L~ls~~~-----------~l~~L~~L~l~~n~~~~lp-~~l~~l~~---------------------------L~~L~l~ 135 (443)
|++++|. ++++|++|++++|.++.++ ..++.+++ |++|+++
T Consensus 129 L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 208 (570)
T 2z63_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208 (570)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred EecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc
Confidence 7776652 2456666666666655442 22322222 3333333
Q ss_pred CCC---------------------------------------------------------C---------CCCCCcCEEE
Q 046017 136 NCS---------------------------------------------------------E---------LKLKSLRRIK 149 (443)
Q Consensus 136 ~n~---------------------------------------------------------~---------~~l~~L~~L~ 149 (443)
+|. . ..+++|++|+
T Consensus 209 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ 288 (570)
T 2z63_A 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288 (570)
T ss_dssp SCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEE
T ss_pred cccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEE
Confidence 320 0 0357777777
Q ss_pred ccCCCCCCCCCCC---CCCccccc--cCccccccc-------ccccCCCCCcccCCcccCCcccceeecccccccccc--
Q 046017 150 MSKCSNLKRFPKI---ASCNKVGI--TGIKRLSST-------LRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERL-- 215 (443)
Q Consensus 150 l~~~~~l~~~~~~---~~l~~L~l--~~l~~l~~~-------l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~-- 215 (443)
+++| .++.+|.. .+++.|++ +.+..+|.. +...++.....++. ..+++|++|++++|.+.+..
T Consensus 289 l~~~-~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~ 365 (570)
T 2z63_A 289 LVSV-TIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCC 365 (570)
T ss_dssp EESC-EECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEE
T ss_pred ecCc-cchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccc
Confidence 7775 44456654 24444555 444444431 11112222222222 45667777777776655432
Q ss_pred cccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCC-CCCCCCCCCceEEecCCCCc-ccChhccCC
Q 046017 216 PESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLP-NELGNLKCLAALIVKGTAIR-EVPESLGYL 293 (443)
Q Consensus 216 p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~-~lp~~~~~l 293 (443)
|..+..+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++ ..|..+..+
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred cccccccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC
Confidence 4556666777777777765544333 36666677777777766655444 34566667777777777666 345556666
Q ss_pred CCCCEEEccCCCCC--CCChhhhCCCCCCeeeCCCCCCCcc-CcccccCCCCCcccccccccccCCCCcccC
Q 046017 294 SSLAKLELSNNNLK--RTPESLYQLSSLKYLKPFENNSDRI-PEYLRSSPTSIPSELRSLNLSVDSGNSLNL 362 (443)
Q Consensus 294 ~~L~~L~ls~n~l~--~lp~~l~~l~~L~~L~ls~n~l~~l-p~~~~~~~~~lp~~L~~L~l~~N~l~~l~~ 362 (443)
++|++|++++|++. .+|..+..+++|++|++++|+++.+ |..+..+ ++|++|++++|.++.++.
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-----SSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC-----TTCCEEECCSSCCSCCCT
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcc-----cCCCEEeCCCCcCCCCCH
Confidence 77777777777665 3566666677777777777766555 4444443 567777777776666643
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-32 Score=288.53 Aligned_cols=138 Identities=19% Similarity=0.112 Sum_probs=112.7
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcEEe
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSELE 96 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ 96 (443)
.+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..++++++|++|++++|.++.+|. .|.++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 3689999999998666555678899999999999988887778888899999999999999988885 588899999999
Q ss_pred cCCCC----------CCCCccEEEEeCCCCccc-CccccCCCCCCEEeccCCCCC----------CCCCcCEEEccCCCC
Q 046017 97 LKNSS----------EFEYLRVLRVEGAAIREL-PESIGKSTLLSELELKNCSEL----------KLKSLRRIKMSKCSN 155 (443)
Q Consensus 97 ls~~~----------~l~~L~~L~l~~n~~~~l-p~~l~~l~~L~~L~l~~n~~~----------~l~~L~~L~l~~~~~ 155 (443)
+++|. ++++|++|++++|.++.+ |..+.++++|++|++++|.+. .+++|++|++++|..
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 98762 568899999999986655 556778889999999888654 347788888888643
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.7e-34 Score=271.29 Aligned_cols=260 Identities=20% Similarity=0.215 Sum_probs=179.8
Q ss_pred CCCCCc--cCCCCCccC---CCcceEEecCCCCCC--cCCccccCCCCCcEEeccc-cccccccccccCCCCcccEEEee
Q 046017 4 KIPSCN--IDGSTGIER---PCSCGLRLKNCSSLE--SFPSSLCVLKSLRSLQIID-CKKFERLLDELGNLETLLVLRVE 75 (443)
Q Consensus 4 ~~~~c~--~~g~~~~~~---~~L~~L~ls~~~~~~--~~p~~~~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~l~ 75 (443)
+.++|. |.|+.|... .++++|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..++++++|++|+++
T Consensus 30 ~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls 109 (313)
T 1ogq_A 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109 (313)
T ss_dssp TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE
T ss_pred CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECc
Confidence 467898 999999754 689999999999877 8899999999999999995 88888899999999999999999
Q ss_pred cCchh-hhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCc-ccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCC
Q 046017 76 GAAIR-ELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIR-ELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKC 153 (443)
Q Consensus 76 ~n~l~-~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~-~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~ 153 (443)
+|.++ .+|..+.++++|++|++++ |.++ .+|..+..+++|++|++++
T Consensus 110 ~n~l~~~~p~~~~~l~~L~~L~Ls~--------------N~l~~~~p~~~~~l~~L~~L~L~~----------------- 158 (313)
T 1ogq_A 110 HTNVSGAIPDFLSQIKTLVTLDFSY--------------NALSGTLPPSISSLPNLVGITFDG----------------- 158 (313)
T ss_dssp EECCEEECCGGGGGCTTCCEEECCS--------------SEEESCCCGGGGGCTTCCEEECCS-----------------
T ss_pred CCeeCCcCCHHHhCCCCCCEEeCCC--------------CccCCcCChHHhcCCCCCeEECcC-----------------
Confidence 98887 6777666665555555544 4433 4555555555555555444
Q ss_pred CCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCC-CcceeeccC
Q 046017 154 SNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLA-LLCELKMIK 232 (443)
Q Consensus 154 ~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~-~L~~L~ls~ 232 (443)
|.+.+.+|..++.++ .|++|++++
T Consensus 159 -------------------------------------------------------N~l~~~~p~~l~~l~~~L~~L~L~~ 183 (313)
T 1ogq_A 159 -------------------------------------------------------NRISGAIPDSYGSFSKLFTSMTISR 183 (313)
T ss_dssp -------------------------------------------------------SCCEEECCGGGGCCCTTCCEEECCS
T ss_pred -------------------------------------------------------CcccCcCCHHHhhhhhcCcEEECcC
Confidence 444444454555554 555555555
Q ss_pred ccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCC-CCCh
Q 046017 233 CSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLK-RTPE 311 (443)
Q Consensus 233 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~-~lp~ 311 (443)
|.+.+.+|..+..++ |++|++++|.+.+..|..+..+++|++|++++|.++..++.+..+++|++|++++|+++ .+|.
T Consensus 184 N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 262 (313)
T 1ogq_A 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ 262 (313)
T ss_dssp SEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG
T ss_pred CeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh
Confidence 555555555555554 66666666666555566666666666666666666644444666777777777777777 6677
Q ss_pred hhhCCCCCCeeeCCCCCCC-ccCcccccCCCCCcccccccccccCC
Q 046017 312 SLYQLSSLKYLKPFENNSD-RIPEYLRSSPTSIPSELRSLNLSVDS 356 (443)
Q Consensus 312 ~l~~l~~L~~L~ls~n~l~-~lp~~~~~~~~~lp~~L~~L~l~~N~ 356 (443)
.+..+++|++|++++|+++ .+|.. ..+ ++|+.+++++|.
T Consensus 263 ~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l-----~~L~~l~l~~N~ 302 (313)
T 1ogq_A 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNL-----QRFDVSAYANNK 302 (313)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCCS-TTG-----GGSCGGGTCSSS
T ss_pred HHhcCcCCCEEECcCCcccccCCCC-ccc-----cccChHHhcCCC
Confidence 7777777777777777774 56653 332 577777777774
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-33 Score=286.06 Aligned_cols=337 Identities=20% Similarity=0.237 Sum_probs=234.9
Q ss_pred CCccCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hh
Q 046017 7 SCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QS 85 (443)
Q Consensus 7 ~c~~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~ 85 (443)
.|.|.|+ | +.+++. .+.+|..+. ++|++|++++|.+.+..|..|+++++|++|++++|.++.++ ..
T Consensus 3 ~C~~~~~-c---------~~~~~~-l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 69 (549)
T 2z81_A 3 SCDASGV-C---------DGRSRS-FTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69 (549)
T ss_dssp EECTTSE-E---------ECTTSC-CSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT
T ss_pred cCCCCce-E---------ECCCCc-cccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh
Confidence 4777775 3 556665 567887554 79999999999988777889999999999999999999766 78
Q ss_pred hccCCCCcEEecCCCC----------CCCCccEEEEeCCCCcc--cCccccCCCCCCEEeccCCCCC---------CCCC
Q 046017 86 LGQLALLSELELKNSS----------EFEYLRVLRVEGAAIRE--LPESIGKSTLLSELELKNCSEL---------KLKS 144 (443)
Q Consensus 86 ~~~l~~L~~L~ls~~~----------~l~~L~~L~l~~n~~~~--lp~~l~~l~~L~~L~l~~n~~~---------~l~~ 144 (443)
|.++++|++|++++|. .+++|++|++++|.++. +|..++++++|++|++++|... .+++
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~ 149 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccc
Confidence 9999999999999973 67999999999999885 4677899999999999999733 7889
Q ss_pred cCEEEccCCCCCCCCCCC-CCCc---cccc--cCccccccccc-------cc--CCCCCccc------------------
Q 046017 145 LRRIKMSKCSNLKRFPKI-ASCN---KVGI--TGIKRLSSTLR-------LK--NCSSLESL------------------ 191 (443)
Q Consensus 145 L~~L~l~~~~~l~~~~~~-~~l~---~L~l--~~l~~l~~~l~-------~~--~~~~l~~l------------------ 191 (443)
|++|++++|.....+|.. ..++ .|++ +.+..+|..+. .. ..+.+..+
T Consensus 150 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 229 (549)
T 2z81_A 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229 (549)
T ss_dssp EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred cCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence 999999997655555554 4333 3444 33333332110 00 01111111
Q ss_pred --------------CCcccCCcccceeeccccccccc--c---------------------------------cccccCC
Q 046017 192 --------------PSSLCMLKSLRFLETIACKKLER--L---------------------------------PESLGQL 222 (443)
Q Consensus 192 --------------p~~~~~l~~L~~L~ls~n~~~~~--~---------------------------------p~~l~~l 222 (443)
+..+..+++|+.+++++|...+. + +..+...
T Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~ 309 (549)
T 2z81_A 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309 (549)
T ss_dssp EESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred ccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence 11112233444444444333221 0 0001112
Q ss_pred CCcceeeccCccCCCCCCchh-hcCCCCCcEecccccccccCC---CCCCCCCCCceEEecCCCCcccC---hhccCCCC
Q 046017 223 ALLCELKMIKCSSFESLPSSL-CMLKSLTPLAIIDCKIFKRLP---NELGNLKCLAALIVKGTAIREVP---ESLGYLSS 295 (443)
Q Consensus 223 ~~L~~L~ls~n~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~~lp---~~~~~l~~ 295 (443)
++|++|++++|.+ +.+|..+ ..+++|++|++++|++.+.+| ..++.+++|++|++++|+++.++ ..+..+++
T Consensus 310 ~~L~~L~l~~n~l-~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 310 EKVKRITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN 388 (549)
T ss_dssp TTCCEEEEESSCC-CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred ccceEEEeccCcc-ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence 4566777777654 3566665 468888899998888876553 34677888888888888888765 34778888
Q ss_pred CCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCCh
Q 046017 296 LAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDL 364 (443)
Q Consensus 296 L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~ 364 (443)
|++|++++|+++.+|..+..+++|++|++++|+++.+|.. +|++|++|++++|.++.++..+
T Consensus 389 L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-------~~~~L~~L~Ls~N~l~~~~~~l 450 (549)
T 2z81_A 389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC-------IPQTLEVLDVSNNNLDSFSLFL 450 (549)
T ss_dssp CCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTT-------SCTTCSEEECCSSCCSCCCCCC
T ss_pred CCEEECCCCCCccCChhhcccccccEEECCCCCcccccch-------hcCCceEEECCCCChhhhcccC
Confidence 8888888888888888888888888888888888877764 3356666666666655554333
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9e-33 Score=276.40 Aligned_cols=307 Identities=19% Similarity=0.262 Sum_probs=173.3
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE 96 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ 96 (443)
.++++++|+++++. ...+|. +..+++|++|++++|.+.+ ++. ++.+++|++|++++|.++.++. +.++++|++|+
T Consensus 44 ~l~~l~~L~l~~~~-i~~l~~-~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCSSC-CCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred HhccccEEecCCCC-CccCcc-hhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 35677888887776 345554 6777788888888776544 333 7777888888888877776665 77778888888
Q ss_pred cCCCC--------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC-----CCCCcCEEEccCCCCCCCCCCC-
Q 046017 97 LKNSS--------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL-----KLKSLRRIKMSKCSNLKRFPKI- 162 (443)
Q Consensus 97 ls~~~--------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~-----~l~~L~~L~l~~~~~l~~~~~~- 162 (443)
+++|. .+++|++|++++|.++.++. +..+++|++|+++++... .+++|++|++++|. ++.++..
T Consensus 119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~ 196 (466)
T 1o6v_A 119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLA 196 (466)
T ss_dssp CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGG
T ss_pred CCCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhc
Confidence 87763 56778888888777776654 667777777777533211 66777777777753 4444332
Q ss_pred --CCCccccc--cCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCC
Q 046017 163 --ASCNKVGI--TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES 238 (443)
Q Consensus 163 --~~l~~L~l--~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~ 238 (443)
.+++.|++ +.+..+ +. ++.+++|++|++++|.+.+ + ..+..+++|++|++++|.+.+.
T Consensus 197 ~l~~L~~L~l~~n~l~~~---------------~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDI---------------TP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp GCTTCSEEECCSSCCCCC---------------GG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC
T ss_pred cCCCCCEEEecCCccccc---------------cc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccc
Confidence 44444544 222221 11 3344555555555544332 1 2344455555555555544433
Q ss_pred CCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCC
Q 046017 239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSS 318 (443)
Q Consensus 239 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~ 318 (443)
.+ +..+++|++|++++|.+.+. +. +..+++|++|++++|+++.++. +..+++|+.|++++|++++++. +..+++
T Consensus 259 ~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~ 332 (466)
T 1o6v_A 259 AP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTK 332 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTT
T ss_pred hh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCcc
Confidence 22 44455555555555554332 22 4445555555555555554443 4445555555555555554443 445555
Q ss_pred CCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcc
Q 046017 319 LKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL 360 (443)
Q Consensus 319 L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l 360 (443)
|++|++++|+++.++ .+..+ ++|++|++++|.++.+
T Consensus 333 L~~L~l~~n~l~~~~-~l~~l-----~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 333 LQRLFFYNNKVSDVS-SLANL-----TNINWLSAGHNQISDL 368 (466)
T ss_dssp CCEEECCSSCCCCCG-GGTTC-----TTCCEEECCSSCCCBC
T ss_pred CCEeECCCCccCCch-hhccC-----CCCCEEeCCCCccCcc
Confidence 555555555554442 22222 4555555555544444
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.7e-32 Score=274.41 Aligned_cols=313 Identities=21% Similarity=0.265 Sum_probs=258.0
Q ss_pred ccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEE
Q 046017 16 IERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSEL 95 (443)
Q Consensus 16 ~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L 95 (443)
..+++|++|++++|.+ ..+|. +.++++|++|++++|.+.+..+ ++++++|++|++++|.++.++. +.++++|++|
T Consensus 65 ~~l~~L~~L~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred hhhcCCCEEECCCCcc-CCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 3689999999999984 45555 8999999999999998765444 9999999999999999998876 8999999999
Q ss_pred ecCCC--------CCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcCEEEccCCCCCCCCCC
Q 046017 96 ELKNS--------SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLRRIKMSKCSNLKRFPK 161 (443)
Q Consensus 96 ~ls~~--------~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~~ 161 (443)
++++| ..+++|++|+++ +.+..++. +.++++|++|++++|... .+++|++|++++|. +..++.
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~ 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-ISDITP 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCGG
T ss_pred ECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCc-cccccc
Confidence 99886 367999999997 45555554 889999999999999765 77899999999964 444332
Q ss_pred C---CCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCC
Q 046017 162 I---ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES 238 (443)
Q Consensus 162 ~---~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~ 238 (443)
. .+++.|++.+ +.+..++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.
T Consensus 217 ~~~l~~L~~L~l~~-------------n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 280 (466)
T 1o6v_A 217 LGILTNLDELSLNG-------------NQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280 (466)
T ss_dssp GGGCTTCCEEECCS-------------SCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC
T ss_pred ccccCCCCEEECCC-------------CCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc
Confidence 3 5666666611 1222332 47788999999999988876554 88999999999999987764
Q ss_pred CCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCC
Q 046017 239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSS 318 (443)
Q Consensus 239 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~ 318 (443)
.+ +..+++|++|++++|++.+..+ +..+++|++|++++|+++.+++ +..+++|++|++++|+++.++ .+..+++
T Consensus 281 ~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~ 354 (466)
T 1o6v_A 281 SP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTN 354 (466)
T ss_dssp GG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred cc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCC
Confidence 43 7889999999999999866433 7889999999999999998776 788999999999999999985 6899999
Q ss_pred CCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccCCh
Q 046017 319 LKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNLDL 364 (443)
Q Consensus 319 L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~ 364 (443)
|++|++++|+++.+++ +..+ ++|++|++++|.++.+|..+
T Consensus 355 L~~L~l~~n~l~~~~~-~~~l-----~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 355 INWLSAGHNQISDLTP-LANL-----TRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp CCEEECCSSCCCBCGG-GTTC-----TTCCEEECCCEEEECCCBCC
T ss_pred CCEEeCCCCccCccch-hhcC-----CCCCEEeccCCcccCCchhh
Confidence 9999999999987766 5554 78999999999888876654
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.5e-33 Score=271.08 Aligned_cols=293 Identities=17% Similarity=0.140 Sum_probs=237.7
Q ss_pred cCCCcceEEecCCCCCCcCCc-cccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcE
Q 046017 17 ERPCSCGLRLKNCSSLESFPS-SLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSE 94 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~ 94 (443)
.++++++|+++++. .+.+|. .+..+++|++|++++|.+.+..+..++.+++|++|++++|.++.++ ..+.++++|++
T Consensus 43 ~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 45889999999987 556665 4678999999999999877766778999999999999999998775 56888999999
Q ss_pred EecCCCC----------CCCCccEEEEeCCCCcccC-ccccCCCCCCEEeccCCCCC-----CCCCcCEEEccCCCCCCC
Q 046017 95 LELKNSS----------EFEYLRVLRVEGAAIRELP-ESIGKSTLLSELELKNCSEL-----KLKSLRRIKMSKCSNLKR 158 (443)
Q Consensus 95 L~ls~~~----------~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~l~~n~~~-----~l~~L~~L~l~~~~~l~~ 158 (443)
|++++|. .+++|++|++++|.++.++ ..+..+++|++|++++|.+. .+++|++|++++| .++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n-~l~- 199 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLS- 199 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSS-CCS-
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccc-ccc-
Confidence 9988762 4577888888888776664 34677778888888777554 5566666666663 111
Q ss_pred CCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCC
Q 046017 159 FPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES 238 (443)
Q Consensus 159 ~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~ 238 (443)
.+...++|++|++++|.+... |.. ..++|+.|++++|.+.+.
T Consensus 200 -----------------------------------~~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~ 241 (390)
T 3o6n_A 200 -----------------------------------TLAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT 241 (390)
T ss_dssp -----------------------------------EEECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC
T ss_pred -----------------------------------ccCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc
Confidence 123345899999999876554 433 357899999999987653
Q ss_pred CCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCC
Q 046017 239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSS 318 (443)
Q Consensus 239 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~ 318 (443)
..+..+++|++|++++|.+.+..|..+..+++|++|++++|+++.+|..+..+++|++|++++|+++.+|..+..+++
T Consensus 242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319 (390)
T ss_dssp --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCc
Confidence 578899999999999999988888899999999999999999999998888899999999999999999988999999
Q ss_pred CCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCc
Q 046017 319 LKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNS 359 (443)
Q Consensus 319 L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~ 359 (443)
|++|++++|+++.+|. .. .++|++|++++|.++.
T Consensus 320 L~~L~L~~N~i~~~~~--~~-----~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 320 LENLYLDHNSIVTLKL--ST-----HHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CSEEECCSSCCCCCCC--CT-----TCCCSEEECCSSCEEH
T ss_pred CCEEECCCCccceeCc--hh-----hccCCEEEcCCCCccc
Confidence 9999999999988863 22 2689999999997653
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.5e-32 Score=280.14 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=107.6
Q ss_pred CCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEec
Q 046017 19 PCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELEL 97 (443)
Q Consensus 19 ~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~l 97 (443)
+++++|||++|.+.+..+.+|.++++|++|+|++|.+.+..|.+|+++++|++|+|++|+++.+| ..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 48999999999965555578999999999999999987766778999999999999999999888 56899999999999
Q ss_pred CCCC----------CCCCccEEEEeCCCCcc--cCccccCCCCCCEEeccCCCCC
Q 046017 98 KNSS----------EFEYLRVLRVEGAAIRE--LPESIGKSTLLSELELKNCSEL 140 (443)
Q Consensus 98 s~~~----------~l~~L~~L~l~~n~~~~--lp~~l~~l~~L~~L~l~~n~~~ 140 (443)
++|. ++++|++|++++|.++. +|..+..+++|++|++++|++.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 9873 67899999999999774 5777889999999999999754
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.1e-32 Score=260.46 Aligned_cols=290 Identities=22% Similarity=0.229 Sum_probs=214.8
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE 96 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ 96 (443)
.+++|++|+++++. ...+|. +..+++|++|++++|.+.+ ++. +..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~~~-i~~~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHTTCSEEECCSSC-CCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred hcccccEEEEeCCc-cccchh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 67899999999988 455665 8899999999999997654 554 889999999999999999876 588888888888
Q ss_pred cCCCC--------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcCEEEccCCCCCCCCCCC
Q 046017 97 LKNSS--------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLRRIKMSKCSNLKRFPKI 162 (443)
Q Consensus 97 ls~~~--------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~~~ 162 (443)
+++|. .+++|++|++++|.....+..+..+++|++|++++|... .+++|++|++++|. +.
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~----- 190 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ-IE----- 190 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC-CC-----
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc-cc-----
Confidence 88763 557777777777753333333677777777777777544 45666666666642 21
Q ss_pred CCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCch
Q 046017 163 ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSS 242 (443)
Q Consensus 163 ~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~ 242 (443)
.++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+.. .
T Consensus 191 ---------------------------~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-~- 238 (347)
T 4fmz_A 191 ---------------------------DISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-P- 238 (347)
T ss_dssp ---------------------------CCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-
T ss_pred ---------------------------cccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-c-
Confidence 2222 5677788888888876665433 677888888888887765533 3
Q ss_pred hhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCe
Q 046017 243 LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKY 321 (443)
Q Consensus 243 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~ 321 (443)
+..+++|++|++++|.+.+ + ..+..+++|++|++++|.++.++ .+..+++|+.|++++|+++.. |..+..+++|++
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 7778888888888887754 3 45777888888888888888775 467788888888888888854 466788888888
Q ss_pred eeCCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017 322 LKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 322 L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
|++++|+++.+++ +..+ ++|++|++++|.++
T Consensus 316 L~L~~n~l~~~~~-~~~l-----~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP-LASL-----SKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG-GGGC-----TTCSEESSSCC---
T ss_pred EEccCCccccccC-hhhh-----hccceeehhhhccc
Confidence 8888888877766 4443 68888888888764
No 29
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.3e-32 Score=291.27 Aligned_cols=310 Identities=16% Similarity=0.112 Sum_probs=208.8
Q ss_pred ccCCCcceEEecCCCCCCcC-CccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhh-hhhh--hccCCC
Q 046017 16 IERPCSCGLRLKNCSSLESF-PSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRE-LSQS--LGQLAL 91 (443)
Q Consensus 16 ~~~~~L~~L~ls~~~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-lp~~--~~~l~~ 91 (443)
..+++|++|++++|...+.+ |.+|.++++|++|+|++|.+.+..|..|+.+++|++|++++|.++. +|.. +.++++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 46788999999998766666 6778899999999999988887778889999999999999998874 5544 888999
Q ss_pred CcEEecCCCC-----------CCCCccEEEEeCCCCccc-CccccCC--CCCCEEeccCCCCC--------CCC------
Q 046017 92 LSELELKNSS-----------EFEYLRVLRVEGAAIREL-PESIGKS--TLLSELELKNCSEL--------KLK------ 143 (443)
Q Consensus 92 L~~L~ls~~~-----------~l~~L~~L~l~~n~~~~l-p~~l~~l--~~L~~L~l~~n~~~--------~l~------ 143 (443)
|++|++++|. ++++|++|++++|.++.+ |..+..+ ++|+.|+++.|... .++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 9999988863 568899999999886543 5555555 67777777777543 122
Q ss_pred CcCEEEccCCCCCCCCCCC------------------------------------------CCCccccc--cCcccccc-
Q 046017 144 SLRRIKMSKCSNLKRFPKI------------------------------------------ASCNKVGI--TGIKRLSS- 178 (443)
Q Consensus 144 ~L~~L~l~~~~~l~~~~~~------------------------------------------~~l~~L~l--~~l~~l~~- 178 (443)
+|++|++++|.....++.. .+++.|++ +.+..++.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~ 284 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence 2777777776322221110 13344444 34433321
Q ss_pred cc---------cccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCC
Q 046017 179 TL---------RLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSL 249 (443)
Q Consensus 179 ~l---------~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L 249 (443)
.+ ...++...+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L 364 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCC
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCC
Confidence 11 111233223345678889999999999988888778889999999999999998877667778889999
Q ss_pred CcEecccccccccCCCCCCCCCCCceEEecCCCCcccCh----------------------hccCCCCCCEEEccCCCCC
Q 046017 250 TPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE----------------------SLGYLSSLAKLELSNNNLK 307 (443)
Q Consensus 250 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~----------------------~~~~l~~L~~L~ls~n~l~ 307 (443)
++|++++|.+.+ ++ .+++|+.|++++|+++.+|. .+..+++|+.|++++|+++
T Consensus 365 ~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 365 QTLDLRDNALTT-IH----FIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp CEEEEETCCSCC-CS----SCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CEEECCCCCCCc-cc----CCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 999999988743 22 13444444444444443332 1335666666666666666
Q ss_pred CCCh--hhhCCCCCCeeeCCCCCCC
Q 046017 308 RTPE--SLYQLSSLKYLKPFENNSD 330 (443)
Q Consensus 308 ~lp~--~l~~l~~L~~L~ls~n~l~ 330 (443)
.++. .+..+++|++|++++|.++
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~ 464 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQ 464 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCS
T ss_pred ccccccccccCCccccccCCCCccc
Confidence 4432 2334555555555555554
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-32 Score=283.58 Aligned_cols=292 Identities=17% Similarity=0.142 Sum_probs=237.5
Q ss_pred cCCCcceEEecCCCCCCcCCc-cccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcE
Q 046017 17 ERPCSCGLRLKNCSSLESFPS-SLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSE 94 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~ 94 (443)
.+.+++.+++++|. .+.+|. .+..+++|++|++++|.+.+..|..|+.+++|++|++++|.++.+| ..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 45788999999987 455554 5678999999999999987777778999999999999999999776 45788999999
Q ss_pred EecCCCC----------CCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCC-----CCCCcCEEEccCCCCCCC
Q 046017 95 LELKNSS----------EFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSEL-----KLKSLRRIKMSKCSNLKR 158 (443)
Q Consensus 95 L~ls~~~----------~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~-----~l~~L~~L~l~~~~~l~~ 158 (443)
|++++|. .+++|++|++++|.++.++. .+..+++|++|++++|.+. .+++|+.|++++| .+.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n-~l~- 205 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLS- 205 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSS-CCS-
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccC-ccc-
Confidence 9998862 45778888888888766644 5777888888888887654 5566667766663 111
Q ss_pred CCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCC
Q 046017 159 FPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES 238 (443)
Q Consensus 159 ~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~ 238 (443)
.+...++|++|++++|.+... +..+ .++|+.|++++|.+.+
T Consensus 206 -----------------------------------~l~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~- 246 (597)
T 3oja_B 206 -----------------------------------TLAIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD- 246 (597)
T ss_dssp -----------------------------------EEECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC-
T ss_pred -----------------------------------cccCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC-
Confidence 123445799999999876543 3322 3689999999998876
Q ss_pred CCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCC
Q 046017 239 LPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSS 318 (443)
Q Consensus 239 ~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~ 318 (443)
+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++.+|..+..+++|+.|++++|.++.+|..+..+++
T Consensus 247 -~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~ 325 (597)
T 3oja_B 247 -TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325 (597)
T ss_dssp -CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred -ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCC
Confidence 3678899999999999999988888899999999999999999999998888899999999999999999998999999
Q ss_pred CCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017 319 LKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 319 L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
|++|++++|.+..+|. .. .++|+.|++++|.+.
T Consensus 326 L~~L~L~~N~l~~~~~--~~-----~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 326 LENLYLDHNSIVTLKL--ST-----HHTLKNLTLSHNDWD 358 (597)
T ss_dssp CSEEECCSSCCCCCCC--CT-----TCCCSEEECCSSCEE
T ss_pred CCEEECCCCCCCCcCh--hh-----cCCCCEEEeeCCCCC
Confidence 9999999999988863 22 268999999999764
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.9e-32 Score=270.95 Aligned_cols=315 Identities=16% Similarity=0.137 Sum_probs=248.6
Q ss_pred ccCCCcceEEecCCCCCCcC-CccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchh-hhhhh--hccCCC
Q 046017 16 IERPCSCGLRLKNCSSLESF-PSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIR-ELSQS--LGQLAL 91 (443)
Q Consensus 16 ~~~~~L~~L~ls~~~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~lp~~--~~~l~~ 91 (443)
..+++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..++++++|++|++++|.++ .+|.. +..+++
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 130 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc
Confidence 36889999999999876666 467899999999999999988888999999999999999999998 45554 899999
Q ss_pred CcEEecCCCC-----------CCCCccEEEEeCCCCccc-CccccCC--CCCCEEeccCCCCC----------------C
Q 046017 92 LSELELKNSS-----------EFEYLRVLRVEGAAIREL-PESIGKS--TLLSELELKNCSEL----------------K 141 (443)
Q Consensus 92 L~~L~ls~~~-----------~l~~L~~L~l~~n~~~~l-p~~l~~l--~~L~~L~l~~n~~~----------------~ 141 (443)
|++|++++|. .+++|++|++++|.++.+ |..+..+ .+|+.|++++|... .
T Consensus 131 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 210 (455)
T 3v47_A 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210 (455)
T ss_dssp CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT
T ss_pred CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccc
Confidence 9999999873 568999999999997765 4455544 67888888888655 2
Q ss_pred CCCcCEEEccCCCCCCCCCCC-------CCCccccccCcccccccccccCCCCCcc-cCCccc--CCcccceeecccccc
Q 046017 142 LKSLRRIKMSKCSNLKRFPKI-------ASCNKVGITGIKRLSSTLRLKNCSSLES-LPSSLC--MLKSLRFLETIACKK 211 (443)
Q Consensus 142 l~~L~~L~l~~~~~l~~~~~~-------~~l~~L~l~~l~~l~~~l~~~~~~~l~~-lp~~~~--~l~~L~~L~ls~n~~ 211 (443)
+++|++|++++|......|.. .+++.|++.+-......+.. ..+.. .+..+. ..++|++|++++|.+
T Consensus 211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH---TNFKDPDNFTFKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC---CSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch---hhhccCcccccccccccCceEEEecCccc
Confidence 357888888887544322221 23444444111100000000 00000 011122 236899999999999
Q ss_pred cccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCccc-Chhc
Q 046017 212 LERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV-PESL 290 (443)
Q Consensus 212 ~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~ 290 (443)
.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++.+ |..+
T Consensus 288 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence 999999999999999999999999888888999999999999999999777788899999999999999999966 7789
Q ss_pred cCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCC-ccC
Q 046017 291 GYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSD-RIP 333 (443)
Q Consensus 291 ~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~-~lp 333 (443)
..+++|++|++++|+++++|. .+..+++|++|++++|++. ..|
T Consensus 368 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 368 LGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999999999885 5689999999999999995 444
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=268.50 Aligned_cols=281 Identities=17% Similarity=0.148 Sum_probs=205.3
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcEEe
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSELE 96 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ 96 (443)
.+++++|++++|.+.+..+..|.++++|++|+|++|.+.+..|..|+++++|++|++++|.++.+|. .|.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 4589999999998666667788999999999999998877778889999999999999999998874 478888888888
Q ss_pred cCCCC----------CCCCccEEEEeCCCCccc-CccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCCC
Q 046017 97 LKNSS----------EFEYLRVLRVEGAAIREL-PESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLK 157 (443)
Q Consensus 97 ls~~~----------~l~~L~~L~l~~n~~~~l-p~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l~ 157 (443)
+++|. .+++|++|++++|.++.+ |..+.++++|++|++++|.+. .+++|+.|++++|. +.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~ 189 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-IN 189 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-Cc
Confidence 88763 457777777777776655 445677777777777777543 45566666666632 11
Q ss_pred CCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCC
Q 046017 158 RFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFE 237 (443)
Q Consensus 158 ~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~ 237 (443)
.+ .+..+..+++|++|++++|...+.+|.......+|++|++++|.+..
T Consensus 190 ~~-------------------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 190 AI-------------------------------RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp EE-------------------------------CTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred Ee-------------------------------ChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence 11 12345667777777777777777777666666677777777776654
Q ss_pred CCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCCh-hhhC
Q 046017 238 SLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPE-SLYQ 315 (443)
Q Consensus 238 ~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~-~l~~ 315 (443)
..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++.+ |..+..+++|+.|++++|+++.+|. .+..
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 318 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHS 318 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSC
T ss_pred cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCC
Confidence 3335667777777777777777665566677777777777777777754 5567777777777777777777764 4567
Q ss_pred CCCCCeeeCCCCCCC
Q 046017 316 LSSLKYLKPFENNSD 330 (443)
Q Consensus 316 l~~L~~L~ls~n~l~ 330 (443)
+++|++|++++|.+.
T Consensus 319 l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 319 VGNLETLILDSNPLA 333 (477)
T ss_dssp GGGCCEEECCSSCEE
T ss_pred CcccCEEEccCCCcc
Confidence 777777777777764
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.5e-32 Score=271.43 Aligned_cols=310 Identities=20% Similarity=0.164 Sum_probs=160.3
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcc-------------cEEEeecCchhhhh
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETL-------------LVLRVEGAAIRELS 83 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L-------------~~L~l~~n~l~~lp 83 (443)
..++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++.+++| ++|+++++.++.+|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 357899999999986 8999999999999999999999888999999888765 88888888887777
Q ss_pred hhhccCCCCcEEecCCCC------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcCEEEcc
Q 046017 84 QSLGQLALLSELELKNSS------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLRRIKMS 151 (443)
Q Consensus 84 ~~~~~l~~L~~L~ls~~~------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~ 151 (443)
.. .++|++|++++|. .+++|++|++++|.++.+|.. .++|++|++++|.+. .+++|++|+++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD 161 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred CC---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCcccCCCCCCCEEECC
Confidence 52 3577777777653 235677777777766666542 256777777766543 55666777777
Q ss_pred CCCCCCCCCCC-CCCccccc--cCccccccccccc--------CCCCCcccCCcccCCcccceeeccccccccccccccc
Q 046017 152 KCSNLKRFPKI-ASCNKVGI--TGIKRLSSTLRLK--------NCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLG 220 (443)
Q Consensus 152 ~~~~l~~~~~~-~~l~~L~l--~~l~~l~~~l~~~--------~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~ 220 (443)
+| .++.+|.. .+++.|++ +.+..+|. +... ..+.+..+|.. .++|++|++++|.+. .+| .++
T Consensus 162 ~N-~l~~lp~~~~~L~~L~L~~n~l~~l~~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~lp-~~~ 234 (454)
T 1jl5_A 162 NN-SLKKLPDLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-ELP-ELQ 234 (454)
T ss_dssp SS-CCSCCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SCC-CCT
T ss_pred CC-cCcccCCCcccccEEECcCCcCCcCcc-ccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-ccc-ccC
Confidence 64 45556655 56666655 33332221 0000 11112222221 124555555554433 344 245
Q ss_pred CCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEE
Q 046017 221 QLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLE 300 (443)
Q Consensus 221 ~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ 300 (443)
.+++|++|++++|.+.+ +|.. +++|++|++++|.+.+ +|.. +++|++|++++|.++.+|.. .++|+.|+
T Consensus 235 ~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~---~~~L~~L~ 303 (454)
T 1jl5_A 235 NLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL---PPNLYYLN 303 (454)
T ss_dssp TCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC---CTTCCEEE
T ss_pred CCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc---CCcCCEEE
Confidence 55555555555544432 3321 2455555555555432 3332 24555555555555544321 14555555
Q ss_pred ccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcccC
Q 046017 301 LSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSLNL 362 (443)
Q Consensus 301 ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l~~ 362 (443)
+++|++++++. ..++|++|++++|+++.+|.. +++|++|++++|.++.+|.
T Consensus 304 l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~--------~~~L~~L~L~~N~l~~lp~ 354 (454)
T 1jl5_A 304 ASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL--------PPRLERLIASFNHLAEVPE 354 (454)
T ss_dssp CCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC--------CTTCCEEECCSSCCSCCCC
T ss_pred CcCCcCCcccC---CcCcCCEEECCCCcccccccc--------CCcCCEEECCCCccccccc
Confidence 55555554432 113666666666666666652 2566666666666666655
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-31 Score=268.21 Aligned_cols=300 Identities=19% Similarity=0.198 Sum_probs=247.3
Q ss_pred cceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecCC
Q 046017 21 SCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELKN 99 (443)
Q Consensus 21 L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~ 99 (443)
-+.++.++.+ +..+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.++.+ |..|.++++|++|++++
T Consensus 13 ~~~v~c~~~~-l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKR-FVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCC-CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCC-cCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 3567777766 667787553 6899999999998887788999999999999999999966 68899999999999988
Q ss_pred CC----------CCCCccEEEEeCCCCccc-CccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCCCCCC
Q 046017 100 SS----------EFEYLRVLRVEGAAIREL-PESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLKRFP 160 (443)
Q Consensus 100 ~~----------~l~~L~~L~l~~n~~~~l-p~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l~~~~ 160 (443)
|. ++++|++|++++|.++.+ |..+.++++|++|++++|.+. .+++|++|++++| .++.++
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 168 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIP 168 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccC
Confidence 62 567888888888887655 456777888888888887654 5677777777774 222221
Q ss_pred CCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCC
Q 046017 161 KIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLP 240 (443)
Q Consensus 161 ~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p 240 (443)
+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|
T Consensus 169 -------------------------------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 169 -------------------------------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp -------------------------------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred -------------------------------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 1347788999999999999888777889999999999999999988888
Q ss_pred chhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCCCCCCC-ChhhhCCCC
Q 046017 241 SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLKRT-PESLYQLSS 318 (443)
Q Consensus 241 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~ 318 (443)
.......+|++|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|+++.+ |..+..+++
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 877777899999999999864333568899999999999999997754 578899999999999999976 678999999
Q ss_pred CCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCc
Q 046017 319 LKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNS 359 (443)
Q Consensus 319 L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~ 359 (443)
|++|++++|+++.+|...... .++|++|++++|.+..
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~----l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHS----VGNLETLILDSNPLAC 334 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSC----GGGCCEEECCSSCEEC
T ss_pred CCEEECCCCcCceeCHhHcCC----CcccCEEEccCCCccC
Confidence 999999999999998765432 2699999999997653
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=5.8e-31 Score=261.87 Aligned_cols=284 Identities=17% Similarity=0.150 Sum_probs=202.2
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE 96 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ 96 (443)
.+++|++|++++|.+. .+| .+..+++|++|++++|.+.+ +| ++.+++|++|++++|.++.+| ++.+++|++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~-~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHTTCCEEECCSSCCC-CCT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred HcCCCCEEEccCCCcc-cCh-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 5789999999999854 456 58999999999999998665 44 889999999999999999875 88999999999
Q ss_pred cCCCC-------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcCEEEccCCCCCCCCCCC-
Q 046017 97 LKNSS-------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLRRIKMSKCSNLKRFPKI- 162 (443)
Q Consensus 97 ls~~~-------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~~~- 162 (443)
+++|. .+++|++|++++|.++.++ ++.+++|++|++++|... .+++|++|++++| .++.+|-.
T Consensus 113 L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~l~l~~ 189 (457)
T 3bz5_A 113 CDTNKLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELDVSQ 189 (457)
T ss_dssp CCSSCCSCCCCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS-CCCCCCCTT
T ss_pred CCCCcCCeecCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC-ccceecccc
Confidence 99873 6688999999999988875 788899999999988533 7788899999885 45555532
Q ss_pred -CCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCc
Q 046017 163 -ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPS 241 (443)
Q Consensus 163 -~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~ 241 (443)
.+++.|++. .+.+..+ .++.+++|++|++++|.+.+ +| ++.+++|++|++++|.+.+..+.
T Consensus 190 l~~L~~L~l~-------------~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~ 251 (457)
T 3bz5_A 190 NKLLNRLNCD-------------TNNITKL--DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS 251 (457)
T ss_dssp CTTCCEEECC-------------SSCCSCC--CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT
T ss_pred CCCCCEEECc-------------CCcCCee--ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH
Confidence 445555551 1122222 25566777777777776665 45 66777777777777776654443
Q ss_pred hhhcCC-------CCCcEecccccccccCCCCCCCCCCCceEEecCCCC-cccCh--------hccCCCCCCEEEccCCC
Q 046017 242 SLCMLK-------SLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAI-REVPE--------SLGYLSSLAKLELSNNN 305 (443)
Q Consensus 242 ~~~~l~-------~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l-~~lp~--------~~~~l~~L~~L~ls~n~ 305 (443)
.+.+++ +|+.|++++|...+.+| ++.+++|+.|++++|.. ..+|. .+..+++|++|++++|+
T Consensus 252 ~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 252 TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 333333 44555666665555554 35667777777777742 23332 14455677777777777
Q ss_pred CCCCChhhhCCCCCCeeeCCCCCCCcc
Q 046017 306 LKRTPESLYQLSSLKYLKPFENNSDRI 332 (443)
Q Consensus 306 l~~lp~~l~~l~~L~~L~ls~n~l~~l 332 (443)
+++++ +..+++|+.|++++|+++.+
T Consensus 330 l~~l~--l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 330 LTELD--VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp CSCCC--CTTCTTCSEEECCSSCCCBC
T ss_pred ccccc--cccCCcCcEEECCCCCCCCc
Confidence 77763 66777777777777777654
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=4.3e-31 Score=258.14 Aligned_cols=273 Identities=14% Similarity=0.074 Sum_probs=239.1
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhh-hccCCCCcEE
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQS-LGQLALLSEL 95 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L 95 (443)
.+++|++|++++|.+.+..+.+|..+++|++|++++|.+.+..|..++.+++|++|++++|.++.+|.. |.++++|++|
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 578999999999996656666899999999999999998877788899999999999999999999865 5899999999
Q ss_pred ecCCCC----------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC---CCCCcCEEEccCCCCCCCCCCC
Q 046017 96 ELKNSS----------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL---KLKSLRRIKMSKCSNLKRFPKI 162 (443)
Q Consensus 96 ~ls~~~----------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~---~l~~L~~L~l~~~~~l~~~~~~ 162 (443)
++++|. .+++|++|++++|.++.++ +..+++|++|++++|... ..++|++|++++| .+.
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n-~l~----- 218 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SIN----- 218 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS-CCC-----
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCC-eee-----
Confidence 999873 5689999999999998886 677999999999999766 6678999999985 222
Q ss_pred CCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCch
Q 046017 163 ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSS 242 (443)
Q Consensus 163 ~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~ 242 (443)
.+|.. ..++|++|++++|.+.+. ..+..+++|++|++++|.+.+..|..
T Consensus 219 ---------------------------~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 219 ---------------------------VVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp ---------------------------EEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ---------------------------ecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 22222 346899999999887764 57889999999999999998888999
Q ss_pred hhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCee
Q 046017 243 LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYL 322 (443)
Q Consensus 243 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L 322 (443)
+..+++|++|++++|++.+ +|..+..+++|++|++++|.++.+|..+..+++|++|++++|+++.++ +..+++|++|
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L 344 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNL 344 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEE
T ss_pred ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEE
Confidence 9999999999999999854 677778899999999999999999998999999999999999999886 6789999999
Q ss_pred eCCCCCCCc
Q 046017 323 KPFENNSDR 331 (443)
Q Consensus 323 ~ls~n~l~~ 331 (443)
++++|.+..
T Consensus 345 ~l~~N~~~~ 353 (390)
T 3o6n_A 345 TLSHNDWDC 353 (390)
T ss_dssp ECCSSCEEH
T ss_pred EcCCCCccc
Confidence 999999854
No 37
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=6e-31 Score=261.54 Aligned_cols=316 Identities=21% Similarity=0.196 Sum_probs=247.5
Q ss_pred ccCCCcceEEecCCCCCCcCCccccCCCCC-------------cEEeccccccccccccccCCCCcccEEEeecCchhhh
Q 046017 16 IERPCSCGLRLKNCSSLESFPSSLCVLKSL-------------RSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL 82 (443)
Q Consensus 16 ~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L-------------~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l 82 (443)
..+++|++|++++|.+.+.+|..++++++| ++|++++|.+. .+|.. .++|++|++++|.++.+
T Consensus 31 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~~---~~~L~~L~l~~n~l~~l 106 (454)
T 1jl5_A 31 ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTEL 106 (454)
T ss_dssp ---CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSC
T ss_pred hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCCC---cCCCCEEEccCCcCCcc
Confidence 367899999999999888999989988875 99999998854 45552 47899999999999988
Q ss_pred hhhhccCCCCcEEecCCCC-----CC-CCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC----CCCCcCEEEccC
Q 046017 83 SQSLGQLALLSELELKNSS-----EF-EYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL----KLKSLRRIKMSK 152 (443)
Q Consensus 83 p~~~~~l~~L~~L~ls~~~-----~l-~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~----~l~~L~~L~l~~ 152 (443)
|.. +++|++|++++|. .+ ++|++|++++|.++.+| .++++++|++|++++|.+. ...+|++|++++
T Consensus 107 p~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~ 182 (454)
T 1jl5_A 107 PEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN 182 (454)
T ss_dssp CCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred ccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcC
Confidence 854 4789999999874 23 68999999999999999 5999999999999999776 456899999999
Q ss_pred CCCCCCCCCC---CCCccccc--cCcccccccc---ccc--CCCCCcccCCcccCCcccceeecccccccccccccccCC
Q 046017 153 CSNLKRFPKI---ASCNKVGI--TGIKRLSSTL---RLK--NCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQL 222 (443)
Q Consensus 153 ~~~l~~~~~~---~~l~~L~l--~~l~~l~~~l---~~~--~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l 222 (443)
| .++.+|.. .+++.|++ +.+..+|... ... ..+.+..+|. ++.+++|++|++++|.+.+ +|.. +
T Consensus 183 n-~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~ 256 (454)
T 1jl5_A 183 N-QLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LPDL---P 256 (454)
T ss_dssp S-CCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CCSC---C
T ss_pred C-cCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCc-cccc---c
Confidence 6 56667755 55566666 6666655422 211 2345668885 8899999999999987765 5543 4
Q ss_pred CCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEcc
Q 046017 223 ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELS 302 (443)
Q Consensus 223 ~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls 302 (443)
++|++|++++|.+.+ +|.. +++|++|++++|.+.+ +|.. .++|++|++++|+++.++.. .++|++|+++
T Consensus 257 ~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls 325 (454)
T 1jl5_A 257 PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVS 325 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECC
T ss_pred cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECC
Confidence 899999999988765 5653 4889999999999865 3321 26899999999999877632 2589999999
Q ss_pred CCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcc---cCChhhh
Q 046017 303 NNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL---NLDLNKL 367 (443)
Q Consensus 303 ~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l---~~~~~~l 367 (443)
+|+++++|.. +++|++|++++|+++.+|. .+++|++|++++|.++.+ |.++.++
T Consensus 326 ~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~--------~l~~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 326 NNKLIELPAL---PPRLERLIASFNHLAEVPE--------LPQNLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp SSCCSCCCCC---CTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred CCcccccccc---CCcCCEEECCCCccccccc--------hhhhccEEECCCCCCCcCCCChHHHHhh
Confidence 9999998864 6899999999999999988 237899999999988774 4555443
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=7.9e-30 Score=243.48 Aligned_cols=259 Identities=20% Similarity=0.209 Sum_probs=154.5
Q ss_pred CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecC
Q 046017 20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELK 98 (443)
Q Consensus 20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls 98 (443)
++++++++++. ...+|..+. +++++|++++|.+.+..+..++++++|++|++++|.++.+ |..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCC-ccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 78999999887 566776553 6899999999987776666899999999999999999866 6778887777777776
Q ss_pred CCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC--------CCCCcCEEEccCCCCCCCCCCCCCCccccc
Q 046017 99 NSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL--------KLKSLRRIKMSKCSNLKRFPKIASCNKVGI 170 (443)
Q Consensus 99 ~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~--------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l 170 (443)
+ |.++.+|..+. ++|++|++++|.+. .+++|++|++++|.. +
T Consensus 109 ~--------------n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~------------- 158 (330)
T 1xku_A 109 K--------------NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL-K------------- 158 (330)
T ss_dssp S--------------SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCC-C-------------
T ss_pred C--------------CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcC-C-------------
Confidence 6 44555555433 45555555555321 223333333333211 0
Q ss_pred cCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCC
Q 046017 171 TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLT 250 (443)
Q Consensus 171 ~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~ 250 (443)
..+..+..+..+++|++|++++|.+.. +|..+. ++|++|++++|.+.+..|..+..+++|+
T Consensus 159 ----------------~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 159 ----------------SSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLA 219 (330)
T ss_dssp ----------------GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred ----------------ccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 001222345555566666666554432 343332 5566666666555555555555566666
Q ss_pred cEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh-hhh------CCCCCCeee
Q 046017 251 PLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE-SLY------QLSSLKYLK 323 (443)
Q Consensus 251 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~-~l~------~l~~L~~L~ 323 (443)
+|++++|.+.+..+..+..+++|++|++++|.++.+|..+..+++|++|++++|+++.++. .+. ..+.|+.|+
T Consensus 220 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~ 299 (330)
T 1xku_A 220 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299 (330)
T ss_dssp EEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred EEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceE
Confidence 6666666555444445555566666666666666666555556666666666666665542 221 124555666
Q ss_pred CCCCCCC
Q 046017 324 PFENNSD 330 (443)
Q Consensus 324 ls~n~l~ 330 (443)
+++|.+.
T Consensus 300 l~~N~~~ 306 (330)
T 1xku_A 300 LFSNPVQ 306 (330)
T ss_dssp CCSSSSC
T ss_pred eecCccc
Confidence 6665553
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=6.3e-30 Score=245.81 Aligned_cols=269 Identities=22% Similarity=0.203 Sum_probs=227.8
Q ss_pred ccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEE
Q 046017 16 IERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSEL 95 (443)
Q Consensus 16 ~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L 95 (443)
..+++|++|++++|.+ +.++. +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.++.++. +..+++|++|
T Consensus 63 ~~~~~L~~L~l~~n~i-~~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQI-TDISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSL 137 (347)
T ss_dssp GGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred hhcCCccEEEccCCcc-ccchh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence 3689999999999984 55665 8999999999999997654 54 69999999999999999998877 8899999999
Q ss_pred ecCCCC---------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC------CCCCcCEEEccCCCCCCCCC
Q 046017 96 ELKNSS---------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL------KLKSLRRIKMSKCSNLKRFP 160 (443)
Q Consensus 96 ~ls~~~---------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~------~l~~L~~L~l~~~~~l~~~~ 160 (443)
++++|. .+++|++|++++|.+..++. +..+++|++|++++|.+. .+++|+++++++|. +.
T Consensus 138 ~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~--- 212 (347)
T 4fmz_A 138 NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ-IT--- 212 (347)
T ss_dssp ECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSC-CC---
T ss_pred ECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCC-CC---
Confidence 999983 56899999999999888877 889999999999999765 67788888888852 22
Q ss_pred CCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCC
Q 046017 161 KIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLP 240 (443)
Q Consensus 161 ~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p 240 (443)
.++. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ +
T Consensus 213 -----------------------------~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~- 258 (347)
T 4fmz_A 213 -----------------------------DITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I- 258 (347)
T ss_dssp -----------------------------CCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-
T ss_pred -----------------------------CCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-
Confidence 2222 6788999999999988766443 8899999999999987765 3
Q ss_pred chhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcc-cChhccCCCCCCEEEccCCCCCCCChhhhCCCCC
Q 046017 241 SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE-VPESLGYLSSLAKLELSNNNLKRTPESLYQLSSL 319 (443)
Q Consensus 241 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L 319 (443)
+.+..+++|++|++++|.+.+ + ..+..+++|++|++++|.++. .+..+..+++|++|++++|.++.+++ +..+++|
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 335 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKM 335 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTC
T ss_pred hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhcc
Confidence 468899999999999998865 3 458889999999999999984 45678899999999999999999877 8999999
Q ss_pred CeeeCCCCCCCc
Q 046017 320 KYLKPFENNSDR 331 (443)
Q Consensus 320 ~~L~ls~n~l~~ 331 (443)
++|++++|.+++
T Consensus 336 ~~L~l~~N~i~~ 347 (347)
T 4fmz_A 336 DSADFANQVIKK 347 (347)
T ss_dssp SEESSSCC----
T ss_pred ceeehhhhcccC
Confidence 999999998863
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.5e-30 Score=266.45 Aligned_cols=272 Identities=15% Similarity=0.078 Sum_probs=239.5
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhh-hccCCCCcEE
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQS-LGQLALLSEL 95 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L 95 (443)
.+++|++|++++|.+.+..|..|+.+++|++|+|++|.+.+..|..|+.+++|++|++++|.++.+|.. |..+++|++|
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 578999999999997666667899999999999999998887788889999999999999999998865 6899999999
Q ss_pred ecCCCC----------CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC---CCCCcCEEEccCCCCCCCCCCC
Q 046017 96 ELKNSS----------EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL---KLKSLRRIKMSKCSNLKRFPKI 162 (443)
Q Consensus 96 ~ls~~~----------~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~---~l~~L~~L~l~~~~~l~~~~~~ 162 (443)
++++|. .+++|++|++++|.++.++ +..+++|+.|++++|... ...+|++|++++|. +..
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~-l~~---- 225 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INV---- 225 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSC-CCE----
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCc-ccc----
Confidence 999873 5689999999999998886 567999999999999766 66789999999852 222
Q ss_pred CCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCch
Q 046017 163 ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSS 242 (443)
Q Consensus 163 ~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~ 242 (443)
+|..+ .++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..|..
T Consensus 226 ----------------------------~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 226 ----------------------------VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp ----------------------------EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ----------------------------ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 22222 2589999999998876 367889999999999999999988999
Q ss_pred hhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCee
Q 046017 243 LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYL 322 (443)
Q Consensus 243 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L 322 (443)
+..+++|++|++++|.+.+ +|..+..+++|++|++++|.++.+|..+..+++|+.|++++|.++.+| +..+++|+.|
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L 350 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNL 350 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEE
T ss_pred hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEE
Confidence 9999999999999999865 677778899999999999999999999999999999999999999886 6789999999
Q ss_pred eCCCCCCC
Q 046017 323 KPFENNSD 330 (443)
Q Consensus 323 ~ls~n~l~ 330 (443)
++++|.+.
T Consensus 351 ~l~~N~~~ 358 (597)
T 3oja_B 351 TLSHNDWD 358 (597)
T ss_dssp ECCSSCEE
T ss_pred EeeCCCCC
Confidence 99999984
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.1e-29 Score=242.58 Aligned_cols=268 Identities=19% Similarity=0.235 Sum_probs=162.0
Q ss_pred CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecC
Q 046017 20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELK 98 (443)
Q Consensus 20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls 98 (443)
++++++++++. .+.+|..+. ++|++|++++|.+.+..|..++++++|++|++++|.++.+ |..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSC-CSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCC-ccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 68999999987 567776553 6899999999987766677899999999999999999866 6778777777777766
Q ss_pred CCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccc
Q 046017 99 NSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSS 178 (443)
Q Consensus 99 ~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~ 178 (443)
+ |.++.+|..+. ++|++|++++|. ++.++
T Consensus 111 ~--------------n~l~~l~~~~~--~~L~~L~l~~n~-----------------i~~~~------------------ 139 (332)
T 2ft3_A 111 K--------------NHLVEIPPNLP--SSLVELRIHDNR-----------------IRKVP------------------ 139 (332)
T ss_dssp S--------------SCCCSCCSSCC--TTCCEEECCSSC-----------------CCCCC------------------
T ss_pred C--------------CcCCccCcccc--ccCCEEECCCCc-----------------cCccC------------------
Confidence 5 45556665443 556666665541 11111
Q ss_pred cccccCCCCCcccCCcccCCcccceeeccccccc--ccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccc
Q 046017 179 TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKL--ERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIID 256 (443)
Q Consensus 179 ~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~--~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~ 256 (443)
+..+..+++|++|++++|.+. +..+..+..+ +|++|++++|.+.+ +|..+. ++|++|++++
T Consensus 140 -------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~ 202 (332)
T 2ft3_A 140 -------------KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDH 202 (332)
T ss_dssp -------------SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCS
T ss_pred -------------HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCC
Confidence 112445555666666655543 2344445444 56666666655433 343332 4566666666
Q ss_pred ccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcc
Q 046017 257 CKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEY 335 (443)
Q Consensus 257 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~ 335 (443)
|.+.+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|+++.+|..+..+++|++|++++|+++.++..
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChh
Confidence 66555444555566666666666666654443 45556666666666666666665566666666666666666555543
Q ss_pred cccCC--CCCcccccccccccCCCC
Q 046017 336 LRSSP--TSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 336 ~~~~~--~~lp~~L~~L~l~~N~l~ 358 (443)
..... .....+|+.|++++|.+.
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred HccccccccccccccceEeecCccc
Confidence 22110 001234556666666544
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.8e-29 Score=251.20 Aligned_cols=294 Identities=16% Similarity=0.105 Sum_probs=233.8
Q ss_pred CCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCCCC------
Q 046017 28 NCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSS------ 101 (443)
Q Consensus 28 ~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~------ 101 (443)
.+......+..++++++|++|++++|.+.+ +| .++.+++|++|++++|.++.+| ++.+++|++|++++|.
T Consensus 27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~ 102 (457)
T 3bz5_A 27 AFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLDV 102 (457)
T ss_dssp HTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred hcCcCcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceeec
Confidence 333334445568889999999999998765 56 6899999999999999999886 8899999999999973
Q ss_pred -CCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC-----CCCCcCEEEccCCCCCCCCCCC--CCCccccccCc
Q 046017 102 -EFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL-----KLKSLRRIKMSKCSNLKRFPKI--ASCNKVGITGI 173 (443)
Q Consensus 102 -~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~-----~l~~L~~L~l~~~~~l~~~~~~--~~l~~L~l~~l 173 (443)
.+++|++|++++|.++.+| ++.+++|++|++++|.+. .+++|++|++++|..++.++.. .+++.|++.
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls-- 178 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS-- 178 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC--
T ss_pred CCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECC--
Confidence 6799999999999999887 889999999999999775 7889999999998888777543 667777761
Q ss_pred ccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEe
Q 046017 174 KRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLA 253 (443)
Q Consensus 174 ~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~ 253 (443)
.+.++.+| ++.+++|++|++++|.+.+. .++.+++|++|++++|.+.+ +| +..+++|++|+
T Consensus 179 -----------~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 179 -----------FNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp -----------SSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred -----------CCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 12334454 67889999999999887764 37889999999999998876 66 78899999999
Q ss_pred cccccccccCCCCCCCCCCCceEEecCCCCc-----------ccChhccCCCCCCEEEccCCCCC-CCCh--------hh
Q 046017 254 IIDCKIFKRLPNELGNLKCLAALIVKGTAIR-----------EVPESLGYLSSLAKLELSNNNLK-RTPE--------SL 313 (443)
Q Consensus 254 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-----------~lp~~~~~l~~L~~L~ls~n~l~-~lp~--------~l 313 (443)
+++|++.+..+ ..+++|+.|++++|+++ .+| ++.+++|+.|++++|... .+|. .+
T Consensus 240 l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l 314 (457)
T 3bz5_A 240 CSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDL 314 (457)
T ss_dssp CCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred eeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEech
Confidence 99999976543 34555555544444443 344 467899999999999743 2221 26
Q ss_pred hCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcc
Q 046017 314 YQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL 360 (443)
Q Consensus 314 ~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l 360 (443)
..+++|++|++++|+++.++ +..+ ++|++|++++|.++.+
T Consensus 315 ~~~~~L~~L~L~~N~l~~l~--l~~l-----~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 315 SQNPKLVYLYLNNTELTELD--VSHN-----TKLKSLSCVNAHIQDF 354 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCC--CTTC-----TTCSEEECCSSCCCBC
T ss_pred hhcccCCEEECCCCcccccc--cccC-----CcCcEEECCCCCCCCc
Confidence 77889999999999998884 5554 6899999999998875
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.4e-30 Score=246.69 Aligned_cols=175 Identities=20% Similarity=0.219 Sum_probs=153.2
Q ss_pred ccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCC-CCCcEecccccccccCCCCCC
Q 046017 190 SLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLK-SLTPLAIIDCKIFKRLPNELG 268 (443)
Q Consensus 190 ~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~l~ 268 (443)
.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+.
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 3455567778888888888888888899999999999999999999889999999998 999999999999989999998
Q ss_pred CCCCCceEEecCCCCc-ccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCC-ccCcccccCCCCCccc
Q 046017 269 NLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSD-RIPEYLRSSPTSIPSE 346 (443)
Q Consensus 269 ~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~-~lp~~~~~~~~~lp~~ 346 (443)
.++ |++|++++|.++ ..|..+..+++|+.|++++|+++..+..+..+++|++|++++|+++ .+|..+..+ ++
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-----~~ 269 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-----KF 269 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC-----TT
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcC-----cC
Confidence 887 999999999998 6677889999999999999999977666899999999999999995 889888776 79
Q ss_pred ccccccccCCCC-cccCChhhhhhHH
Q 046017 347 LRSLNLSVDSGN-SLNLDLNKLSEIV 371 (443)
Q Consensus 347 L~~L~l~~N~l~-~l~~~~~~l~~l~ 371 (443)
|++|++++|.++ .+|.. .+++.+.
T Consensus 270 L~~L~Ls~N~l~~~ip~~-~~l~~L~ 294 (313)
T 1ogq_A 270 LHSLNVSFNNLCGEIPQG-GNLQRFD 294 (313)
T ss_dssp CCEEECCSSEEEEECCCS-TTGGGSC
T ss_pred CCEEECcCCcccccCCCC-ccccccC
Confidence 999999999887 55554 5555553
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=3.2e-30 Score=245.77 Aligned_cols=242 Identities=22% Similarity=0.325 Sum_probs=191.4
Q ss_pred CCCCCccCCCCCc---------cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEe
Q 046017 4 KIPSCNIDGSTGI---------ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRV 74 (443)
Q Consensus 4 ~~~~c~~~g~~~~---------~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l 74 (443)
..++|.|.|+.+. ..+++++|++++|. ++.+|..+.++++|++|++++|.+. .+|..++.+++|++|++
T Consensus 57 ~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~L 134 (328)
T 4fcg_A 57 NPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134 (328)
T ss_dssp CTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEE
T ss_pred cccccccCCcchhhhHHHHhcccccceeEEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEEC
Confidence 4577999988764 45899999999998 4588988999999999999999877 89999999999999999
Q ss_pred ecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccccC---------CCCCCEEeccCCCCCCCCCc
Q 046017 75 EGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGK---------STLLSELELKNCSELKLKSL 145 (443)
Q Consensus 75 ~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~---------l~~L~~L~l~~n~~~~l~~L 145 (443)
++|.++.+|..+.++++|++|++++|. .++.+|..+.. +++|++|++++|
T Consensus 135 s~n~l~~lp~~l~~l~~L~~L~L~~n~-------------~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-------- 193 (328)
T 4fcg_A 135 ARNPLRALPASIASLNRLRELSIRACP-------------ELTELPEPLASTDASGEHQGLVNLQSLRLEWT-------- 193 (328)
T ss_dssp ESCCCCCCCGGGGGCTTCCEEEEEEET-------------TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE--------
T ss_pred CCCccccCcHHHhcCcCCCEEECCCCC-------------CccccChhHhhccchhhhccCCCCCEEECcCC--------
Confidence 999999999999888877777776642 24555655433 555555555553
Q ss_pred CEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCc
Q 046017 146 RRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALL 225 (443)
Q Consensus 146 ~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L 225 (443)
.+ ..+|..++.+++|++|++++|.+.+ +|..++.+++|
T Consensus 194 ---------~l--------------------------------~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L 231 (328)
T 4fcg_A 194 ---------GI--------------------------------RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231 (328)
T ss_dssp ---------CC--------------------------------CCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred ---------Cc--------------------------------CcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence 11 2445567788888888888877664 66678888888
Q ss_pred ceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCc-ccChhccCCCCCCEEEccCC
Q 046017 226 CELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIR-EVPESLGYLSSLAKLELSNN 304 (443)
Q Consensus 226 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~lp~~~~~l~~L~~L~ls~n 304 (443)
++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+. .+|..++.+++|+.+++..+
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 88888888888888888888888888888888888888888888888888888887554 78888888888888888877
Q ss_pred CCCCCC
Q 046017 305 NLKRTP 310 (443)
Q Consensus 305 ~l~~lp 310 (443)
.+..++
T Consensus 312 ~~~~l~ 317 (328)
T 4fcg_A 312 LQAQLD 317 (328)
T ss_dssp GSCC--
T ss_pred HHHHHh
Confidence 665543
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=4.4e-29 Score=258.88 Aligned_cols=130 Identities=18% Similarity=0.176 Sum_probs=110.6
Q ss_pred ceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecCCC
Q 046017 22 CGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELKNS 100 (443)
Q Consensus 22 ~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~~ 100 (443)
++.+.++-+ ++.+|..+. +++++|+|++|.+.+..+.+|.++++|++|++++|.++.+| ..|.++++|++|+|++|
T Consensus 34 ~~~~c~~~~-l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 34 ITYQCMELN-FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp TEEECTTSC-CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CEEECCCCC-cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 445555544 667887553 48999999999987766778999999999999999999887 57999999999999997
Q ss_pred C----------CCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCC---------CCCCcCEEEccCCC
Q 046017 101 S----------EFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSEL---------KLKSLRRIKMSKCS 154 (443)
Q Consensus 101 ~----------~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~---------~l~~L~~L~l~~~~ 154 (443)
. ++++|++|++++|.++.+|. .++++++|++|++++|.+. .+++|++|++++|.
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 3 67999999999999999976 4889999999999999764 67899999999964
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.6e-28 Score=232.95 Aligned_cols=259 Identities=20% Similarity=0.175 Sum_probs=203.1
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEec
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELEL 97 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l 97 (443)
.+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..++.+++|++|++++|.++.+|..+. ++|++|++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 4689999999999666556689999999999999999887779999999999999999999998886553 45555555
Q ss_pred CCCCCCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCC----------CCCCcCEEEccCCCCCCCCCCCCCCc
Q 046017 98 KNSSEFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSEL----------KLKSLRRIKMSKCSNLKRFPKIASCN 166 (443)
Q Consensus 98 s~~~~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~----------~l~~L~~L~l~~~~~l~~~~~~~~l~ 166 (443)
++ |.++.++. .+.++++|++|++++|... .+++|++|++++| .++.+
T Consensus 129 ~~--------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l------- 186 (330)
T 1xku_A 129 HE--------------NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTI------- 186 (330)
T ss_dssp CS--------------SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSC-------
T ss_pred CC--------------CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccC-------
Confidence 54 55555543 2455666666666666542 4566666666663 23333
Q ss_pred cccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcC
Q 046017 167 KVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCML 246 (443)
Q Consensus 167 ~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l 246 (443)
|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+
T Consensus 187 -------------------------~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 239 (330)
T 1xku_A 187 -------------------------PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239 (330)
T ss_dssp -------------------------CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred -------------------------Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC
Confidence 33332 689999999999888888899999999999999999888777789999
Q ss_pred CCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhcc-------CCCCCCEEEccCCCCCC--C-ChhhhCC
Q 046017 247 KSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLG-------YLSSLAKLELSNNNLKR--T-PESLYQL 316 (443)
Q Consensus 247 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~-------~l~~L~~L~ls~n~l~~--l-p~~l~~l 316 (443)
++|++|++++|.+. .+|..+..+++|++|++++|.++.++.... ..+.++.|++++|.+.. + |..+..+
T Consensus 240 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence 99999999999885 788889999999999999999998765322 24789999999999973 3 4678889
Q ss_pred CCCCeeeCCCCC
Q 046017 317 SSLKYLKPFENN 328 (443)
Q Consensus 317 ~~L~~L~ls~n~ 328 (443)
++++.+++++|+
T Consensus 319 ~~l~~l~L~~N~ 330 (330)
T 1xku_A 319 YVRAAVQLGNYK 330 (330)
T ss_dssp CCGGGEEC----
T ss_pred cceeEEEecccC
Confidence 999999999874
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=4.1e-28 Score=231.78 Aligned_cols=269 Identities=18% Similarity=0.167 Sum_probs=209.4
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEec
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELEL 97 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~l 97 (443)
.+++++|++++|.+.+..|..|.++++|++|++++|.+.+..|..++.+++|++|++++|.++.+|..+. +
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~------- 123 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--S------- 123 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--T-------
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--c-------
Confidence 4689999999999666667789999999999999999888778999999999999999999998886543 3
Q ss_pred CCCCCCCCccEEEEeCCCCcccCcc-ccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccc
Q 046017 98 KNSSEFEYLRVLRVEGAAIRELPES-IGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRL 176 (443)
Q Consensus 98 s~~~~l~~L~~L~l~~n~~~~lp~~-l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l 176 (443)
+|++|++++|.++.+|.. +.++++|++|++++|.. +.
T Consensus 124 -------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l-----------------~~------------------ 161 (332)
T 2ft3_A 124 -------SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL-----------------EN------------------ 161 (332)
T ss_dssp -------TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC-----------------BG------------------
T ss_pred -------cCCEEECCCCccCccCHhHhCCCccCCEEECCCCcc-----------------cc------------------
Confidence 455555666788888764 77888999998888721 10
Q ss_pred cccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccc
Q 046017 177 SSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIID 256 (443)
Q Consensus 177 ~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~ 256 (443)
.+..|..+..+ +|++|++++|.+.+ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 162 -----------~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 162 -----------SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp -----------GGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS
T ss_pred -----------CCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 01223445566 88899999877654 665543 7899999999888877778888899999999999
Q ss_pred ccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh-hhhC------CCCCCeeeCCCCCC
Q 046017 257 CKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE-SLYQ------LSSLKYLKPFENNS 329 (443)
Q Consensus 257 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~-~l~~------l~~L~~L~ls~n~l 329 (443)
|.+.+..+..+..+++|++|++++|+++.+|..+..+++|++|++++|+++.++. .+.. .++|+.|++++|.+
T Consensus 227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence 9987766667888999999999999999999889999999999999999998763 3333 46789999999988
Q ss_pred C--ccCcccccCCCCCcccccccccccCC
Q 046017 330 D--RIPEYLRSSPTSIPSELRSLNLSVDS 356 (443)
Q Consensus 330 ~--~lp~~~~~~~~~lp~~L~~L~l~~N~ 356 (443)
. .+++..... .++|+.+++++|.
T Consensus 307 ~~~~~~~~~~~~----l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 307 PYWEVQPATFRC----VTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGSCGGGGTT----BCCSTTEEC----
T ss_pred cccccCcccccc----cchhhhhhccccc
Confidence 6 555433321 2688999998873
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=3.5e-28 Score=231.65 Aligned_cols=238 Identities=23% Similarity=0.280 Sum_probs=179.8
Q ss_pred CCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccC
Q 046017 41 VLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELP 120 (443)
Q Consensus 41 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp 120 (443)
..+++++|++++|.+. .+|..++++++|++|++++|.++.+|..+..+++|++|++ ++|.++.+|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~L--------------s~n~l~~lp 143 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTL--------------ARNPLRALP 143 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEE--------------ESCCCCCCC
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEEC--------------CCCccccCc
Confidence 3578899999998865 7888888899999999999998888877777655555544 457777888
Q ss_pred ccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcc
Q 046017 121 ESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKS 200 (443)
Q Consensus 121 ~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~ 200 (443)
..+.++++|++|++++| +.++.+|.. +. -..++..+..+++
T Consensus 144 ~~l~~l~~L~~L~L~~n----------------~~~~~~p~~-----------------~~------~~~~~~~~~~l~~ 184 (328)
T 4fcg_A 144 ASIASLNRLRELSIRAC----------------PELTELPEP-----------------LA------STDASGEHQGLVN 184 (328)
T ss_dssp GGGGGCTTCCEEEEEEE----------------TTCCCCCSC-----------------SE------EEC-CCCEEESTT
T ss_pred HHHhcCcCCCEEECCCC----------------CCccccChh-----------------Hh------hccchhhhccCCC
Confidence 88888888888888776 344444321 00 0012233556888
Q ss_pred cceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecC
Q 046017 201 LRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG 280 (443)
Q Consensus 201 L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 280 (443)
|++|++++|.+. .+|..++.+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus 185 L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 888998887766 778888888888888888887764 666788888888888888888888888888888888888888
Q ss_pred CCCc-ccChhccCCCCCCEEEccCCCCC-CCChhhhCCCCCCeeeCCCCCCCccCc
Q 046017 281 TAIR-EVPESLGYLSSLAKLELSNNNLK-RTPESLYQLSSLKYLKPFENNSDRIPE 334 (443)
Q Consensus 281 n~l~-~lp~~~~~l~~L~~L~ls~n~l~-~lp~~l~~l~~L~~L~ls~n~l~~lp~ 334 (443)
|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.+++..+.+..++.
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~~ 318 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC---
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHhh
Confidence 7554 77878888888888888887665 678888888888888888776665543
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=235.10 Aligned_cols=265 Identities=19% Similarity=0.188 Sum_probs=156.0
Q ss_pred eEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecCCCC
Q 046017 23 GLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELKNSS 101 (443)
Q Consensus 23 ~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~~~ 101 (443)
..+++++. .+.+|..+. ++|++|++++|.+.+..+..++++++|++|++++|.++.++ ..|.++++|++|++++
T Consensus 35 ~c~~~~~~-l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-- 109 (353)
T 2z80_A 35 ICKGSSGS-LNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-- 109 (353)
T ss_dssp EEECCSTT-CSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS--
T ss_pred EeeCCCCC-ccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC--
Confidence 45666665 556666443 47888888887766544556778888888888888777554 4566655555555544
Q ss_pred CCCCccEEEEeCCCCcccCcc-ccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccc
Q 046017 102 EFEYLRVLRVEGAAIRELPES-IGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTL 180 (443)
Q Consensus 102 ~l~~L~~L~l~~n~~~~lp~~-l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l 180 (443)
|.++.+|.. +.++++|++|++++|. ++
T Consensus 110 ------------n~l~~~~~~~~~~l~~L~~L~L~~n~-----------------l~----------------------- 137 (353)
T 2z80_A 110 ------------NYLSNLSSSWFKPLSSLTFLNLLGNP-----------------YK----------------------- 137 (353)
T ss_dssp ------------SCCSSCCHHHHTTCTTCSEEECTTCC-----------------CS-----------------------
T ss_pred ------------CcCCcCCHhHhCCCccCCEEECCCCC-----------------Cc-----------------------
Confidence 556666654 5666666666666651 11
Q ss_pred cccCCCCCcccCC--cccCCcccceeecccccccc-cccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccc
Q 046017 181 RLKNCSSLESLPS--SLCMLKSLRFLETIACKKLE-RLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDC 257 (443)
Q Consensus 181 ~~~~~~~l~~lp~--~~~~l~~L~~L~ls~n~~~~-~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n 257 (443)
.+|. .+..+++|++|++++|+..+ ..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 138 ---------~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 138 ---------TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp ---------SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred ---------ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 1111 24455566666666653222 23345556666666666666655555556666666666666666
Q ss_pred cccccCCC-CCCCCCCCceEEecCCCCcccCh----hccCCCCCCEEEccCCCCC-----CCChhhhCCCCCCeeeCCCC
Q 046017 258 KIFKRLPN-ELGNLKCLAALIVKGTAIREVPE----SLGYLSSLAKLELSNNNLK-----RTPESLYQLSSLKYLKPFEN 327 (443)
Q Consensus 258 ~~~~~~~~-~l~~l~~L~~L~l~~n~l~~lp~----~~~~l~~L~~L~ls~n~l~-----~lp~~l~~l~~L~~L~ls~n 327 (443)
.+. .+|. .+..+++|++|++++|.++.++. .....+.++.++++++.+. .+|..+..+++|++|++++|
T Consensus 209 ~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 209 QHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp CST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred ccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 552 2222 22335566666666666654331 1223455666666666665 25666677777777777777
Q ss_pred CCCccCccc-ccCCCCCcccccccccccCCCCc
Q 046017 328 NSDRIPEYL-RSSPTSIPSELRSLNLSVDSGNS 359 (443)
Q Consensus 328 ~l~~lp~~~-~~~~~~lp~~L~~L~l~~N~l~~ 359 (443)
+++.+|..+ ..+ ++|++|++++|.+..
T Consensus 288 ~l~~i~~~~~~~l-----~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 288 QLKSVPDGIFDRL-----TSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCCCTTTTTTC-----TTCCEEECCSSCBCC
T ss_pred CCCccCHHHHhcC-----CCCCEEEeeCCCccC
Confidence 777777654 333 567777777776544
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=3.9e-27 Score=241.38 Aligned_cols=270 Identities=23% Similarity=0.233 Sum_probs=182.4
Q ss_pred CCCCccCCCCCc-------cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecC
Q 046017 5 IPSCNIDGSTGI-------ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGA 77 (443)
Q Consensus 5 ~~~c~~~g~~~~-------~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n 77 (443)
.++|.|.|..+. ...++++|+++++. ++.+|..+. ++|++|++++|.+. .+|. .+++|++|++++|
T Consensus 19 ~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~-L~~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N 91 (622)
T 3g06_A 19 APAEESRGRAAVVQKMRACLNNGNAVLNVGESG-LTTLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGN 91 (622)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSC-CSCCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSC
T ss_pred CCcchhccccccCcccccccCCCCcEEEecCCC-cCccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCC
Confidence 356777553221 22469999999998 558887665 89999999999865 6776 6789999999999
Q ss_pred chhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC----CCCCcCEEEccCC
Q 046017 78 AIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL----KLKSLRRIKMSKC 153 (443)
Q Consensus 78 ~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~----~l~~L~~L~l~~~ 153 (443)
.++.+|. .+++|++|++++ |.++.+|. .+++|++|++++|.+. .+++|++|++++|
T Consensus 92 ~l~~lp~---~l~~L~~L~Ls~--------------N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N 151 (622)
T 3g06_A 92 QLTSLPV---LPPGLLELSIFS--------------NPLTHLPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN 151 (622)
T ss_dssp CCSCCCC---CCTTCCEEEECS--------------CCCCCCCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred cCCcCCC---CCCCCCEEECcC--------------CcCCCCCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCC
Confidence 9988876 455555555554 55555554 3455555555555433 2345555555553
Q ss_pred CCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCc
Q 046017 154 SNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKC 233 (443)
Q Consensus 154 ~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n 233 (443)
.++.+| . .+++|+.|++++|.+.+ +| ..+++|+.|++++|
T Consensus 152 -~l~~l~--------------------------------~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 152 -QLASLP--------------------------------A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDN 191 (622)
T ss_dssp -CCSCCC--------------------------------C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSS
T ss_pred -cCCCcC--------------------------------C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCC
Confidence 333222 2 23467777777765544 44 34577788888877
Q ss_pred cCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhh
Q 046017 234 SSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESL 313 (443)
Q Consensus 234 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l 313 (443)
.+.+ +|.. +++|+.|++++|.+. .+|.. +++|++|++++|+++.+| ..+++|+.|++++|+++.+|.
T Consensus 192 ~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~-- 258 (622)
T 3g06_A 192 QLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM-- 258 (622)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--
T ss_pred CCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--
Confidence 6553 4432 467788888877764 45542 467888888888887777 455778888888888887776
Q ss_pred hCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCCcc
Q 046017 314 YQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNSL 360 (443)
Q Consensus 314 ~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~l 360 (443)
.+++|++|++++|+|+.+|..+..+ ++|+.|++++|.++..
T Consensus 259 -~~~~L~~L~Ls~N~L~~lp~~l~~l-----~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLTRLPESLIHL-----SSETTVNLEGNPLSER 299 (622)
T ss_dssp -CCTTCCEEECCSSCCCSCCGGGGGS-----CTTCEEECCSCCCCHH
T ss_pred -ccccCcEEeCCCCCCCcCCHHHhhc-----cccCEEEecCCCCCCc
Confidence 5677888888888888888777665 6788888888876544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.9e-27 Score=222.35 Aligned_cols=245 Identities=23% Similarity=0.217 Sum_probs=137.8
Q ss_pred eEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh---hhhhccCCCCcEEecCC
Q 046017 23 GLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL---SQSLGQLALLSELELKN 99 (443)
Q Consensus 23 ~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l---p~~~~~l~~L~~L~ls~ 99 (443)
.++.++++ ++.+|..+. ++|++|++++|.+....+..++++++|++|++++|.++.+ |..+..+++|++|+++
T Consensus 11 ~l~c~~~~-l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls- 86 (306)
T 2z66_A 11 EIRCNSKG-LTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS- 86 (306)
T ss_dssp EEECCSSC-CSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC-
T ss_pred EEEcCCCC-cccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC-
Confidence 45556655 566776443 6899999999886543334478899999999999888744 4555555555555444
Q ss_pred CCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccccccc
Q 046017 100 SSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSST 179 (443)
Q Consensus 100 ~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~ 179 (443)
+|.++.+|..+..+++|++|++++|. ++.++.
T Consensus 87 -------------~n~i~~l~~~~~~l~~L~~L~l~~n~-----------------l~~~~~------------------ 118 (306)
T 2z66_A 87 -------------FNGVITMSSNFLGLEQLEHLDFQHSN-----------------LKQMSE------------------ 118 (306)
T ss_dssp -------------SCSEEEEEEEEETCTTCCEEECTTSE-----------------EESSTT------------------
T ss_pred -------------CCccccChhhcCCCCCCCEEECCCCc-----------------cccccc------------------
Confidence 45566677667777777777777651 111000
Q ss_pred ccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccc
Q 046017 180 LRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKI 259 (443)
Q Consensus 180 l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~ 259 (443)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 119 ------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------- 165 (306)
T 2z66_A 119 ------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--------------------- 165 (306)
T ss_dssp ------------TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG---------------------
T ss_pred ------------chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc---------------------
Confidence 01244555555666555555444444444455555555555444330
Q ss_pred cccCCCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCcc-Cccc
Q 046017 260 FKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRI-PEYL 336 (443)
Q Consensus 260 ~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~l-p~~~ 336 (443)
.+|..+..+++|++|++++|+++.+ |..+..+++|++|++++|+++.++. .+..+++|++|++++|+++.. |..+
T Consensus 166 --~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 166 --FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp --EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred --cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 2344445555555555555555543 3445555555555555555555442 455556666666666665433 2222
Q ss_pred ccCCCCCcccccccccccCCCC
Q 046017 337 RSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 337 ~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
.. +|++|++|++++|.++
T Consensus 244 ~~----~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 244 QH----FPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CC----CCTTCCEEECTTCCEE
T ss_pred Hh----hhccCCEEEccCCCee
Confidence 22 3346666666666544
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.6e-29 Score=252.34 Aligned_cols=310 Identities=22% Similarity=0.189 Sum_probs=218.8
Q ss_pred cCCCcceEEecCCCCCC----cCCccccCCCCCcEEecccccccccccccc-CCCC----cccEEEeecCchh-----hh
Q 046017 17 ERPCSCGLRLKNCSSLE----SFPSSLCVLKSLRSLQIIDCKKFERLLDEL-GNLE----TLLVLRVEGAAIR-----EL 82 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~----~L~~L~l~~n~l~-----~l 82 (443)
.+++|++|++++|.+.. .++..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|.++ .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 46788888888887543 456667778888888888887655333222 2344 6888888888876 56
Q ss_pred hhhhccCCCCcEEecCCCC---------------CCCCccEEEEeCCCCcc-----cCccccCCCCCCEEeccCCCCC--
Q 046017 83 SQSLGQLALLSELELKNSS---------------EFEYLRVLRVEGAAIRE-----LPESIGKSTLLSELELKNCSEL-- 140 (443)
Q Consensus 83 p~~~~~l~~L~~L~ls~~~---------------~l~~L~~L~l~~n~~~~-----lp~~l~~l~~L~~L~l~~n~~~-- 140 (443)
|..+..+++|++|++++|. ..++|++|++++|.++. ++..+..+++|++|++++|.+.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 7778888888888888874 13468888888888664 4555666788888888888754
Q ss_pred -----------CCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccc
Q 046017 141 -----------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIAC 209 (443)
Q Consensus 141 -----------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n 209 (443)
..++|++|++++|. ++.. ....++..+..+++|++|++++|
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~---------------------------~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCG-VTSD---------------------------NCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSC-CBTT---------------------------HHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCceEEEccCCC-CcHH---------------------------HHHHHHHHHHhCCCccEEeccCC
Confidence 25588888888752 2110 11234555677888999999988
Q ss_pred cccccc-----cccccCCCCcceeeccCccCCCC----CCchhhcCCCCCcEecccccccccCCCCC-----CCCCCCce
Q 046017 210 KKLERL-----PESLGQLALLCELKMIKCSSFES----LPSSLCMLKSLTPLAIIDCKIFKRLPNEL-----GNLKCLAA 275 (443)
Q Consensus 210 ~~~~~~-----p~~l~~l~~L~~L~ls~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~l-----~~l~~L~~ 275 (443)
.+.... +..+..+++|++|++++|.+... ++..+..+++|++|++++|.+....+..+ ...++|++
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 765432 22334578899999999876653 56677778899999999988754322222 22368999
Q ss_pred EEecCCCCcc-----cChhccCCCCCCEEEccCCCCCCC-Chhhh----C-CCCCCeeeCCCCCCC-----ccCcccccC
Q 046017 276 LIVKGTAIRE-----VPESLGYLSSLAKLELSNNNLKRT-PESLY----Q-LSSLKYLKPFENNSD-----RIPEYLRSS 339 (443)
Q Consensus 276 L~l~~n~l~~-----lp~~~~~l~~L~~L~ls~n~l~~l-p~~l~----~-l~~L~~L~ls~n~l~-----~lp~~~~~~ 339 (443)
|++++|.++. ++..+..+++|++|++++|+++.. +..+. . .++|++|++++|+++ .+|..+...
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 397 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 397 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhC
Confidence 9999998873 466677788999999999988743 22232 2 678999999999887 677766655
Q ss_pred CCCCcccccccccccCCCCc
Q 046017 340 PTSIPSELRSLNLSVDSGNS 359 (443)
Q Consensus 340 ~~~lp~~L~~L~l~~N~l~~ 359 (443)
++|++|++++|.++.
T Consensus 398 -----~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 398 -----HSLRELDLSNNCLGD 412 (461)
T ss_dssp -----CCCCEEECCSSSCCH
T ss_pred -----CCccEEECCCCCCCH
Confidence 689999999987664
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.4e-27 Score=229.99 Aligned_cols=253 Identities=22% Similarity=0.171 Sum_probs=205.7
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhh-hccCCCCcEEe
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQS-LGQLALLSELE 96 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ 96 (443)
.++|++|++++|.+.+..+..+.++++|++|++++|.+.+..|..++++++|++|++++|.++.+|.. +.++++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 35899999999996554455899999999999999998877788899999999999999999988865 77777666666
Q ss_pred cCCCCCCCCccEEEEeCCCCcccCc--cccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcc
Q 046017 97 LKNSSEFEYLRVLRVEGAAIRELPE--SIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIK 174 (443)
Q Consensus 97 ls~~~~l~~L~~L~l~~n~~~~lp~--~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~ 174 (443)
+++ |.++.+|. .+..+++|++|++++| +.++.+
T Consensus 131 L~~--------------n~l~~l~~~~~~~~l~~L~~L~l~~n----------------~~~~~~--------------- 165 (353)
T 2z80_A 131 LLG--------------NPYKTLGETSLFSHLTKLQILRVGNM----------------DTFTKI--------------- 165 (353)
T ss_dssp CTT--------------CCCSSSCSSCSCTTCTTCCEEEEEES----------------SSCCEE---------------
T ss_pred CCC--------------CCCcccCchhhhccCCCCcEEECCCC----------------cccccc---------------
Confidence 655 66788876 5778888888888776 222221
Q ss_pred cccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCch-hhcCCCCCcEe
Q 046017 175 RLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSS-LCMLKSLTPLA 253 (443)
Q Consensus 175 ~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~-~~~l~~L~~L~ 253 (443)
.+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|.. +..+++|++|+
T Consensus 166 ----------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 166 ----------------QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLE 228 (353)
T ss_dssp ----------------CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEE
T ss_pred ----------------CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEE
Confidence 1345778999999999999998888999999999999999998864 44443 45689999999
Q ss_pred cccccccccCCCCC---CCCCCCceEEecCCCCc-----ccChhccCCCCCCEEEccCCCCCCCChh-hhCCCCCCeeeC
Q 046017 254 IIDCKIFKRLPNEL---GNLKCLAALIVKGTAIR-----EVPESLGYLSSLAKLELSNNNLKRTPES-LYQLSSLKYLKP 324 (443)
Q Consensus 254 l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~n~l~~lp~~-l~~l~~L~~L~l 324 (443)
+++|.+.+..+..+ ...+.++.++++++.++ .+|..+..+++|++|++++|+++.+|.. +..+++|++|++
T Consensus 229 L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 229 LRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp EESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEe
Confidence 99999876544433 34567888888888776 5788899999999999999999999976 489999999999
Q ss_pred CCCCCCcc
Q 046017 325 FENNSDRI 332 (443)
Q Consensus 325 s~n~l~~l 332 (443)
++|.+..-
T Consensus 309 ~~N~~~~~ 316 (353)
T 2z80_A 309 HTNPWDCS 316 (353)
T ss_dssp CSSCBCCC
T ss_pred eCCCccCc
Confidence 99998543
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.3e-28 Score=230.86 Aligned_cols=259 Identities=13% Similarity=0.068 Sum_probs=174.4
Q ss_pred CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCC
Q 046017 20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKN 99 (443)
Q Consensus 20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~ 99 (443)
.++..+++.+.+...+...+..+++|++|++++|.+.+..|..++.+++|++|++++|.++.++. +..+++|++|++++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 34445555544322223334456677777777777666555667777777777777777764443 44444444444443
Q ss_pred CCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccccccc
Q 046017 100 SSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSST 179 (443)
Q Consensus 100 ~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~ 179 (443)
|.++.++. .++|++|++++|. ++.
T Consensus 90 --------------n~l~~l~~----~~~L~~L~l~~n~-----------------l~~--------------------- 113 (317)
T 3o53_A 90 --------------NYVQELLV----GPSIETLHAANNN-----------------ISR--------------------- 113 (317)
T ss_dssp --------------SEEEEEEE----CTTCCEEECCSSC-----------------CSE---------------------
T ss_pred --------------CccccccC----CCCcCEEECCCCc-----------------cCC---------------------
Confidence 44554442 2566666666541 111
Q ss_pred ccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchh-hcCCCCCcEeccccc
Q 046017 180 LRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSL-CMLKSLTPLAIIDCK 258 (443)
Q Consensus 180 l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~-~~l~~L~~L~l~~n~ 258 (443)
++ ...+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+ ..+++|++|++++|.
T Consensus 114 -----------~~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 114 -----------VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp -----------EE--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred -----------cC--ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 11 1134678888888887777666677788888888888887776666555 367888888888888
Q ss_pred ccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCC--ccCccc
Q 046017 259 IFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSD--RIPEYL 336 (443)
Q Consensus 259 ~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~--~lp~~~ 336 (443)
+.+. +. ...+++|++|++++|+++.+|..+..+++|+.|++++|+++.+|..+..+++|+.|++++|.+. .+|..+
T Consensus 181 l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 181 IYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp CCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred Cccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 7543 33 3347888888888888888887788888888888888888888888888888888888888886 566666
Q ss_pred ccCCCCCcccccccccccC
Q 046017 337 RSSPTSIPSELRSLNLSVD 355 (443)
Q Consensus 337 ~~~~~~lp~~L~~L~l~~N 355 (443)
..+ ++|+.++++++
T Consensus 259 ~~~-----~~L~~l~l~~~ 272 (317)
T 3o53_A 259 SKN-----QRVQTVAKQTV 272 (317)
T ss_dssp HTC-----HHHHHHHHHHH
T ss_pred hcc-----ccceEEECCCc
Confidence 554 67888877643
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.8e-26 Score=217.72 Aligned_cols=243 Identities=20% Similarity=0.168 Sum_probs=185.7
Q ss_pred CCCCCCccCCCCCc----------cCCCcceEEecCCCCCCcCCc-cccCCCCCcEEecccccccc--ccccccCCCCcc
Q 046017 3 PKIPSCNIDGSTGI----------ERPCSCGLRLKNCSSLESFPS-SLCVLKSLRSLQIIDCKKFE--RLLDELGNLETL 69 (443)
Q Consensus 3 ~~~~~c~~~g~~~~----------~~~~L~~L~ls~~~~~~~~p~-~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L 69 (443)
|....|.|.++.|. -.+++++|++++|.+. .+|. .|.++++|++|++++|.+.. ..+..+..+++|
T Consensus 2 P~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 2 PSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred cCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 55566888876664 2358999999999854 5554 57899999999999998763 346777789999
Q ss_pred cEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCc--cccCCCCCCEEeccCCCCCCCCCcCE
Q 046017 70 LVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPE--SIGKSTLLSELELKNCSELKLKSLRR 147 (443)
Q Consensus 70 ~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~--~l~~l~~L~~L~l~~n~~~~l~~L~~ 147 (443)
++|++++|.++.+|..+..+++|++|++++ |.++.++. .+..+++|++|++++|.
T Consensus 81 ~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~--------------n~l~~~~~~~~~~~l~~L~~L~l~~n~--------- 137 (306)
T 2z66_A 81 KYLDLSFNGVITMSSNFLGLEQLEHLDFQH--------------SNLKQMSEFSVFLSLRNLIYLDISHTH--------- 137 (306)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTT--------------SEEESSTTTTTTTTCTTCCEEECTTSC---------
T ss_pred CEEECCCCccccChhhcCCCCCCCEEECCC--------------CcccccccchhhhhccCCCEEECCCCc---------
Confidence 999999999999988888777777666665 66676654 57788888888888761
Q ss_pred EEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccc-cccccccCCCCcc
Q 046017 148 IKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLE-RLPESLGQLALLC 226 (443)
Q Consensus 148 L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~-~~p~~l~~l~~L~ 226 (443)
+. ...|..+..+++|++|++++|.+.+ .+|..+..+++|+
T Consensus 138 --------l~-------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 138 --------TR-------------------------------VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp --------CE-------------------------------ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred --------CC-------------------------------ccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 11 1233457788999999999988876 5788888999999
Q ss_pred eeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcc-cChhccCC-CCCCEEEccCC
Q 046017 227 ELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE-VPESLGYL-SSLAKLELSNN 304 (443)
Q Consensus 227 ~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-lp~~~~~l-~~L~~L~ls~n 304 (443)
+|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++. .|..+..+ ++|++|++++|
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 99999988877777778888888888888888766555566777777788887777774 34556666 37777777777
Q ss_pred CCCC
Q 046017 305 NLKR 308 (443)
Q Consensus 305 ~l~~ 308 (443)
.++.
T Consensus 259 ~~~~ 262 (306)
T 2z66_A 259 DFAC 262 (306)
T ss_dssp CEEC
T ss_pred Ceec
Confidence 7763
No 56
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.7e-28 Score=229.98 Aligned_cols=134 Identities=19% Similarity=0.154 Sum_probs=66.3
Q ss_pred cccCCcccceeeccccccccc--ccccc--cCCCCcceeeccCccCCC--CCC-chhhcCCCCCcEecccccccccCC-C
Q 046017 194 SLCMLKSLRFLETIACKKLER--LPESL--GQLALLCELKMIKCSSFE--SLP-SSLCMLKSLTPLAIIDCKIFKRLP-N 265 (443)
Q Consensus 194 ~~~~l~~L~~L~ls~n~~~~~--~p~~l--~~l~~L~~L~ls~n~~~~--~~p-~~~~~l~~L~~L~l~~n~~~~~~~-~ 265 (443)
.++.+++|++|++++|.+.+. +|..+ ..+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+.+..| .
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 345555566666665554443 22222 455556666665555432 111 122344555555555555544332 2
Q ss_pred CCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCC
Q 046017 266 ELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSD 330 (443)
Q Consensus 266 ~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~ 330 (443)
.+..+++|++|++++|+++.+|..+. ++|++|++++|+++++|. +..+++|++|++++|+++
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred hhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence 33344555555555555555554443 455555555555555544 455555555555555543
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9.2e-26 Score=210.68 Aligned_cols=221 Identities=18% Similarity=0.239 Sum_probs=118.1
Q ss_pred ceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhh-hhhhccCCCCcEEecCCC
Q 046017 22 CGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIREL-SQSLGQLALLSELELKNS 100 (443)
Q Consensus 22 ~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~~ 100 (443)
++++.+++. ++.+|..+ .++|++|++++|.+.+..+..++.+++|++|++++|.++.+ |..|..+++|++|++++
T Consensus 14 ~~~~c~~~~-l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~- 89 (285)
T 1ozn_A 14 VTTSCPQQG-LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD- 89 (285)
T ss_dssp CEEECCSSC-CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-
T ss_pred eEEEcCcCC-cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC-
Confidence 678888776 56677543 46899999999887766667788888888888888888755 45566555555555544
Q ss_pred CCCCCccEEEEeCCC-Cccc-CccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccc
Q 046017 101 SEFEYLRVLRVEGAA-IREL-PESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSS 178 (443)
Q Consensus 101 ~~l~~L~~L~l~~n~-~~~l-p~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~ 178 (443)
|. ++.+ |..+..+++|++|++++|. ++.+
T Consensus 90 -------------n~~l~~~~~~~~~~l~~L~~L~l~~n~-----------------l~~~------------------- 120 (285)
T 1ozn_A 90 -------------NAQLRSVDPATFHGLGRLHTLHLDRCG-----------------LQEL------------------- 120 (285)
T ss_dssp -------------CTTCCCCCTTTTTTCTTCCEEECTTSC-----------------CCCC-------------------
T ss_pred -------------CCCccccCHHHhcCCcCCCEEECCCCc-----------------CCEE-------------------
Confidence 43 4444 4445555555555555541 1110
Q ss_pred cccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccccc
Q 046017 179 TLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCK 258 (443)
Q Consensus 179 ~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~ 258 (443)
.|..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 121 ------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 121 ------------GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp ------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ------------CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 12234445555555555544443333334444555555555544433333334444444444444444
Q ss_pred ccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCCCCC
Q 046017 259 IFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLK 307 (443)
Q Consensus 259 ~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~ 307 (443)
+.+..|..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 444334444444444444444444443332 2334444444444444443
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=7.5e-25 Score=217.30 Aligned_cols=243 Identities=22% Similarity=0.289 Sum_probs=168.4
Q ss_pred CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecC
Q 046017 20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELK 98 (443)
Q Consensus 20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls 98 (443)
..+.++.++.. +..+|..+. +++++|+|++|.+.+..+..|.++++|++|++++|.++.++ ..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKN-LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCC-CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCC-cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 45677777765 667777554 68899999999887777788899999999999999888665 566666655555555
Q ss_pred CCCCCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccccc
Q 046017 99 NSSEFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLS 177 (443)
Q Consensus 99 ~~~~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~ 177 (443)
+ |.++.+|. .+..+++|++|++++|.+ +.++
T Consensus 121 ~--------------n~l~~~~~~~~~~l~~L~~L~L~~N~i-----------------~~~~----------------- 152 (440)
T 3zyj_A 121 D--------------NRLTTIPNGAFVYLSKLKELWLRNNPI-----------------ESIP----------------- 152 (440)
T ss_dssp S--------------SCCSSCCTTTSCSCSSCCEEECCSCCC-----------------CEEC-----------------
T ss_pred C--------------CcCCeeCHhHhhccccCceeeCCCCcc-----------------cccC-----------------
Confidence 4 66777765 467788888888877621 1111
Q ss_pred ccccccCCCCCcccCCcccCCcccceeecccccccccccc-cccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccc
Q 046017 178 STLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPE-SLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIID 256 (443)
Q Consensus 178 ~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~-~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~ 256 (443)
+..+..+++|++|++++|+..+.++. .+..+++|++|++++|.+. .+| .+..+++|++|++++
T Consensus 153 --------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 153 --------------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSG 216 (440)
T ss_dssp --------------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTT
T ss_pred --------------HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCC
Confidence 12355666777777777655555543 5666777777777776554 344 356677777777777
Q ss_pred ccccccCCCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCC
Q 046017 257 CKIFKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNS 329 (443)
Q Consensus 257 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l 329 (443)
|.+.+..|..+..+++|++|++++|+++.+ +..+..+++|+.|+|++|+++.+| ..+..+++|+.|++++|.+
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 777666666777777777777777777755 345666777777777777777665 3456677777777777765
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=5.5e-25 Score=219.02 Aligned_cols=243 Identities=24% Similarity=0.281 Sum_probs=151.7
Q ss_pred CcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecC
Q 046017 20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELK 98 (443)
Q Consensus 20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls 98 (443)
..+.++.++.. +..+|..+. +++++|+|++|.+.+..|..|+++++|++|++++|.++.++ ..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~-l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRG-LSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCC-cCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34567777655 556776443 57888888888877777778888888888888888887655 556666555555554
Q ss_pred CCCCCCCccEEEEeCCCCcccCcc-ccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccccc
Q 046017 99 NSSEFEYLRVLRVEGAAIRELPES-IGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLS 177 (443)
Q Consensus 99 ~~~~l~~L~~L~l~~n~~~~lp~~-l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~ 177 (443)
+ |.++.+|.. +..+++|++|++++|.+ +.++
T Consensus 132 ~--------------n~l~~~~~~~~~~l~~L~~L~L~~N~l-----------------~~~~----------------- 163 (452)
T 3zyi_A 132 D--------------NWLTVIPSGAFEYLSKLRELWLRNNPI-----------------ESIP----------------- 163 (452)
T ss_dssp S--------------SCCSBCCTTTSSSCTTCCEEECCSCCC-----------------CEEC-----------------
T ss_pred C--------------CcCCccChhhhcccCCCCEEECCCCCc-----------------ceeC-----------------
Confidence 4 566666554 56677777777777621 1111
Q ss_pred ccccccCCCCCcccCCcccCCcccceeecccccccccccc-cccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccc
Q 046017 178 STLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPE-SLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIID 256 (443)
Q Consensus 178 ~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~-~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~ 256 (443)
+..+..+++|++|++++|+..+.++. .+..+++|++|++++|.+.+ +| .+..+++|++|++++
T Consensus 164 --------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 164 --------------SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSG 227 (452)
T ss_dssp --------------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTT
T ss_pred --------------HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcC
Confidence 12345556666666666555554443 35566666666666665443 33 355566666666666
Q ss_pred ccccccCCCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCC
Q 046017 257 CKIFKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNS 329 (443)
Q Consensus 257 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l 329 (443)
|.+.+..|..+..+++|++|++++|+++.+ +..+..+++|+.|++++|+++.+| ..+..+++|++|++++|.+
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 666555555666666666666666666644 344566666666666666666655 3345566666666666654
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=3.8e-25 Score=220.17 Aligned_cols=227 Identities=21% Similarity=0.234 Sum_probs=187.1
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcEEe
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSELE 96 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ 96 (443)
.+++++|++++|.+.+..|..|.++++|++|++++|.+.+..+..|..+++|++|++++|.++.+|. .|..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 3589999999999777778889999999999999999888778899999999999999999998874 466666555555
Q ss_pred cCCCCCCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccc
Q 046017 97 LKNSSEFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKR 175 (443)
Q Consensus 97 ls~~~~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~ 175 (443)
++ +|.++.+|. .+.++++|++|++++| +.++.++.
T Consensus 154 L~--------------~N~l~~~~~~~~~~l~~L~~L~l~~~----------------~~l~~i~~-------------- 189 (452)
T 3zyi_A 154 LR--------------NNPIESIPSYAFNRVPSLMRLDLGEL----------------KKLEYISE-------------- 189 (452)
T ss_dssp CC--------------SCCCCEECTTTTTTCTTCCEEECCCC----------------TTCCEECT--------------
T ss_pred CC--------------CCCcceeCHhHHhcCCcccEEeCCCC----------------CCccccCh--------------
Confidence 55 467777765 4677888888887775 33332221
Q ss_pred ccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecc
Q 046017 176 LSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAII 255 (443)
Q Consensus 176 l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~ 255 (443)
..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 190 -----------------~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 190 -----------------GAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250 (452)
T ss_dssp -----------------TTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECT
T ss_pred -----------------hhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeC
Confidence 246788899999999987664 44 57889999999999999888888899999999999999
Q ss_pred cccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCCCCC
Q 046017 256 DCKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLK 307 (443)
Q Consensus 256 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~ 307 (443)
+|++.+..+..+..+++|++|++++|+++.+|. .+..+++|+.|++++|.+.
T Consensus 251 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 251 NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred CCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 999988888889999999999999999998775 4577899999999999876
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2e-26 Score=218.62 Aligned_cols=253 Identities=16% Similarity=0.087 Sum_probs=200.1
Q ss_pred CCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCcc
Q 046017 44 SLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPES 122 (443)
Q Consensus 44 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~ 122 (443)
.++..+++.+.+...+...+..+++|++|++++|.++.++ ..|..+++|++|++++ |.++.++.
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~--------------n~l~~~~~- 75 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS--------------NVLYETLD- 75 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT--------------SCCEEEEE-
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCC--------------CcCCcchh-
Confidence 4566777777665555555667789999999999998665 6777777666666665 55665554
Q ss_pred ccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccc
Q 046017 123 IGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLR 202 (443)
Q Consensus 123 l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~ 202 (443)
+..+++|++|++++|. + .. +...++|+
T Consensus 76 ~~~l~~L~~L~Ls~n~-----------------l--------------------------------~~----l~~~~~L~ 102 (317)
T 3o53_A 76 LESLSTLRTLDLNNNY-----------------V--------------------------------QE----LLVGPSIE 102 (317)
T ss_dssp ETTCTTCCEEECCSSE-----------------E--------------------------------EE----EEECTTCC
T ss_pred hhhcCCCCEEECcCCc-----------------c--------------------------------cc----ccCCCCcC
Confidence 7788888888888861 1 11 12337899
Q ss_pred eeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCC-CCCCCCceEEecCC
Q 046017 203 FLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNEL-GNLKCLAALIVKGT 281 (443)
Q Consensus 203 ~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n 281 (443)
+|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 999999888765543 36889999999999888777788999999999999999977666655 47899999999999
Q ss_pred CCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCC--c
Q 046017 282 AIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN--S 359 (443)
Q Consensus 282 ~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~--~ 359 (443)
.++.++.. ..+++|++|++++|+++.+|..+..+++|++|++++|+++.+|..+..+ ++|++|++++|.+. .
T Consensus 180 ~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l-----~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 180 FIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS-----QNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp CCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCC-----TTCCEEECTTCCCBHHH
T ss_pred cCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcC-----CCCCEEEccCCCccCcC
Confidence 99988654 4589999999999999999988999999999999999999999887655 79999999999887 4
Q ss_pred ccCChhhhhhHHHh
Q 046017 360 LNLDLNKLSEIVKE 373 (443)
Q Consensus 360 l~~~~~~l~~l~~~ 373 (443)
++..+..+..+...
T Consensus 254 ~~~~~~~~~~L~~l 267 (317)
T 3o53_A 254 LRDFFSKNQRVQTV 267 (317)
T ss_dssp HHHHHHTCHHHHHH
T ss_pred HHHHHhccccceEE
Confidence 45555555555433
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.6e-26 Score=228.47 Aligned_cols=234 Identities=13% Similarity=0.092 Sum_probs=172.5
Q ss_pred CCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCcc
Q 046017 43 KSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPES 122 (443)
Q Consensus 43 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~ 122 (443)
++|++|+|++|.+.+..|..|+.+++|++|++++|.++..++ +..+++|++|+++ +|.++.+|.
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls--------------~N~l~~l~~- 97 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN--------------NNYVQELLV- 97 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECC--------------SSEEEEEEE-
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEec--------------CCcCCCCCC-
Confidence 378888888887776666778888888888888887765443 5555444444444 455555553
Q ss_pred ccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccc
Q 046017 123 IGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLR 202 (443)
Q Consensus 123 l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~ 202 (443)
.++|++|++++|. +.. ++. ..+++|+
T Consensus 98 ---~~~L~~L~L~~N~-----------------l~~--------------------------------~~~--~~l~~L~ 123 (487)
T 3oja_A 98 ---GPSIETLHAANNN-----------------ISR--------------------------------VSC--SRGQGKK 123 (487)
T ss_dssp ---CTTCCEEECCSSC-----------------CCC--------------------------------EEE--CCCSSCE
T ss_pred ---CCCcCEEECcCCc-----------------CCC--------------------------------CCc--cccCCCC
Confidence 2566666666651 111 111 1346788
Q ss_pred eeecccccccccccccccCCCCcceeeccCccCCCCCCchhh-cCCCCCcEecccccccccCCCCCCCCCCCceEEecCC
Q 046017 203 FLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLC-MLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT 281 (443)
Q Consensus 203 ~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 281 (443)
+|++++|.+.+..|..++.+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+. +. ...+++|++|++++|
T Consensus 124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N 201 (487)
T 3oja_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSN 201 (487)
T ss_dssp EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSS
T ss_pred EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCC
Confidence 888888888887777888888899999998888877777775 688899999999888654 32 345888999999999
Q ss_pred CCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCC--ccCcccccCCCCCcccccccccc
Q 046017 282 AIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSD--RIPEYLRSSPTSIPSELRSLNLS 353 (443)
Q Consensus 282 ~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~--~lp~~~~~~~~~lp~~L~~L~l~ 353 (443)
.++.+|+.+..+++|+.|++++|.++++|..+..+++|+.|++++|.+. .+|..+..+ +.|+.++++
T Consensus 202 ~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l-----~~L~~l~~~ 270 (487)
T 3oja_A 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN-----QRVQTVAKQ 270 (487)
T ss_dssp CCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC-----HHHHHHHHH
T ss_pred CCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC-----CCCcEEecc
Confidence 9998888888889999999999999988888888899999999998886 666666554 577777775
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.4e-27 Score=225.99 Aligned_cols=253 Identities=20% Similarity=0.193 Sum_probs=176.9
Q ss_pred ccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchh--hhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCC
Q 046017 39 LCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIR--ELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAI 116 (443)
Q Consensus 39 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~ 116 (443)
++..++|++|++++|.+ .+|..+... |++|++++|.++ .+|..+.. ..++ ...+++|++|++++|.+
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~-~~~~------~~~l~~L~~L~L~~n~l 107 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILF-GALR------VLGISGLQELTLENLEV 107 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHH-HHHH------HHTTSCCCEEEEEEEBC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHH-HHHH------hcCcCCccEEEccCCcc
Confidence 34556677777777665 556554433 666777776664 34433320 0000 00134555556666776
Q ss_pred c-ccCccc--cCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCC
Q 046017 117 R-ELPESI--GKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPS 193 (443)
Q Consensus 117 ~-~lp~~l--~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~ 193 (443)
+ .+|..+ ..+++|++|++++| .++ .+|.
T Consensus 108 ~~~~~~~~~~~~l~~L~~L~Ls~N-----------------~l~--------------------------------~~~~ 138 (312)
T 1wwl_A 108 TGTAPPPLLEATGPDLNILNLRNV-----------------SWA--------------------------------TRDA 138 (312)
T ss_dssp BSCCCCCSSSCCSCCCSEEEEESC-----------------BCS--------------------------------SSSS
T ss_pred cchhHHHHHHhcCCCccEEEccCC-----------------CCc--------------------------------chhH
Confidence 5 567765 67777888777776 111 1133
Q ss_pred cccCC-----cccceeecccccccccccccccCCCCcceeeccCccCCCC--CCchh--hcCCCCCcEecccccccc--c
Q 046017 194 SLCML-----KSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFES--LPSSL--CMLKSLTPLAIIDCKIFK--R 262 (443)
Q Consensus 194 ~~~~l-----~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~--~p~~~--~~l~~L~~L~l~~n~~~~--~ 262 (443)
.++.+ ++|++|++++|.+.+..|..++.+++|++|++++|.+.+. ++..+ ..+++|++|++++|++.+ .
T Consensus 139 ~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 218 (312)
T 1wwl_A 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218 (312)
T ss_dssp HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence 34444 7899999999888887778899999999999999887664 23344 788999999999998852 2
Q ss_pred CC-CCCCCCCCCceEEecCCCCcccC--hhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccC
Q 046017 263 LP-NELGNLKCLAALIVKGTAIREVP--ESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSS 339 (443)
Q Consensus 263 ~~-~~l~~l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~ 339 (443)
++ ..+..+++|++|++++|+++..+ ..+..+++|++|++++|+++.+|..+. ++|++|++++|+++.+|. +..+
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l 295 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDEL 295 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTS
T ss_pred HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhC
Confidence 22 23356789999999999998654 445668899999999999999987666 889999999999988877 5554
Q ss_pred CCCCcccccccccccCCCCc
Q 046017 340 PTSIPSELRSLNLSVDSGNS 359 (443)
Q Consensus 340 ~~~lp~~L~~L~l~~N~l~~ 359 (443)
++|++|++++|.++.
T Consensus 296 -----~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 296 -----PQVGNLSLKGNPFLD 310 (312)
T ss_dssp -----CEEEEEECTTCTTTC
T ss_pred -----CCCCEEeccCCCCCC
Confidence 689999999997764
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=4.5e-24 Score=218.74 Aligned_cols=248 Identities=24% Similarity=0.230 Sum_probs=196.3
Q ss_pred CCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCcc
Q 046017 43 KSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPES 122 (443)
Q Consensus 43 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~ 122 (443)
.++++|++++|.+. .+|..+. ++|++|++++|.++.+|. .+ ++|++|++++|.++.+|.
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~---~l--------------~~L~~L~Ls~N~l~~lp~- 98 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA---LP--------------PELRTLEVSGNQLTSLPV- 98 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC---CC--------------TTCCEEEECSCCCSCCCC-
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC---cC--------------CCCCEEEcCCCcCCcCCC-
Confidence 36899999988754 7777665 789999999998887775 22 466666777788888887
Q ss_pred ccCCCCCCEEeccCCCCC----CCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCC
Q 046017 123 IGKSTLLSELELKNCSEL----KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCML 198 (443)
Q Consensus 123 l~~l~~L~~L~l~~n~~~----~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l 198 (443)
.+++|++|++++|.+. .+++|++|++++| .++. +|. .+
T Consensus 99 --~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N-~l~~--------------------------------lp~---~l 140 (622)
T 3g06_A 99 --LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGN-QLTS--------------------------------LPV---LP 140 (622)
T ss_dssp --CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSS-CCSC--------------------------------CCC---CC
T ss_pred --CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCC-CCCc--------------------------------CCC---CC
Confidence 6789999999998655 4567777777774 2333 333 24
Q ss_pred cccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEe
Q 046017 199 KSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIV 278 (443)
Q Consensus 199 ~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 278 (443)
++|++|++++|.+.+ +|. .+++|+.|++++|.+.+ +| ..+++|+.|++++|.+.+ +|.. +++|+.|++
T Consensus 141 ~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L 208 (622)
T 3g06_A 141 PGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWA 208 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEEC
Confidence 789999999987654 554 35789999999987765 66 457899999999999854 5553 478999999
Q ss_pred cCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017 279 KGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 279 ~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
++|.++.+|.. +++|+.|++++|+++.+| ..+++|++|++++|+|+.+|. .+++|++|++++|.++
T Consensus 209 ~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 209 YNNRLTSLPAL---PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp CSSCCSSCCCC---CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSCCC
T ss_pred cCCcccccCCC---CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCCCCC
Confidence 99999998863 589999999999999998 467899999999999999998 3379999999999999
Q ss_pred cccCChhhhhhHHHhcc
Q 046017 359 SLNLDLNKLSEIVKEGW 375 (443)
Q Consensus 359 ~l~~~~~~l~~l~~~~~ 375 (443)
.+|..+.+++.+...+.
T Consensus 275 ~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 275 RLPESLIHLSSETTVNL 291 (622)
T ss_dssp SCCGGGGGSCTTCEEEC
T ss_pred cCCHHHhhccccCEEEe
Confidence 99887776666643333
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=2.7e-27 Score=236.24 Aligned_cols=313 Identities=19% Similarity=0.142 Sum_probs=197.5
Q ss_pred CCCcceEEecCCCCCCcCC-ccccCCCCCcEEecccccccc----ccccccCCCCcccEEEeecCchhh-hh-hhhccCC
Q 046017 18 RPCSCGLRLKNCSSLESFP-SSLCVLKSLRSLQIIDCKKFE----RLLDELGNLETLLVLRVEGAAIRE-LS-QSLGQLA 90 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p-~~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~~-lp-~~~~~l~ 90 (443)
.+++++|+++++.+..... ..+..+++|++|++++|.+.+ .++..+..+++|++|++++|.++. .+ ..+..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4689999999998544322 337789999999999998764 467778889999999999999874 23 2333444
Q ss_pred ----CCcEEecCCCC--------------CCCCccEEEEeCCCCccc-----Ccc-ccCCCCCCEEeccCCCCC------
Q 046017 91 ----LLSELELKNSS--------------EFEYLRVLRVEGAAIREL-----PES-IGKSTLLSELELKNCSEL------ 140 (443)
Q Consensus 91 ----~L~~L~ls~~~--------------~l~~L~~L~l~~n~~~~l-----p~~-l~~l~~L~~L~l~~n~~~------ 140 (443)
+|++|++++|. .+++|++|++++|.++.. ... ....++|++|++++|.+.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 57777777652 334555555555554321 111 112334555555555433
Q ss_pred ------CCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCccc-CCcccceeecccccccc
Q 046017 141 ------KLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLC-MLKSLRFLETIACKKLE 213 (443)
Q Consensus 141 ------~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~-~l~~L~~L~ls~n~~~~ 213 (443)
.+++|++|++++|. +... ....+...+. ..++|++|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~------------------i~~~----------~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNND------------------INEA----------GVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSB------------------CHHH----------HHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHHHhhCCCCCEEECcCCC------------------cchH----------HHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 23455555555431 1100 0001111111 34588888888887765
Q ss_pred c----ccccccCCCCcceeeccCccCCCCC-----CchhhcCCCCCcEeccccccccc----CCCCCCCCCCCceEEecC
Q 046017 214 R----LPESLGQLALLCELKMIKCSSFESL-----PSSLCMLKSLTPLAIIDCKIFKR----LPNELGNLKCLAALIVKG 280 (443)
Q Consensus 214 ~----~p~~l~~l~~L~~L~ls~n~~~~~~-----p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~ 280 (443)
. ++..+..+++|++|++++|.+.... +..+..+++|++|++++|.+... ++..+..+++|++|++++
T Consensus 214 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 3 5667777888889998888764422 11222478889999988877543 455666788899999998
Q ss_pred CCCcc-----cChhcc-CCCCCCEEEccCCCCCC-----CChhhhCCCCCCeeeCCCCCCCcc-CcccccCCCCCccccc
Q 046017 281 TAIRE-----VPESLG-YLSSLAKLELSNNNLKR-----TPESLYQLSSLKYLKPFENNSDRI-PEYLRSSPTSIPSELR 348 (443)
Q Consensus 281 n~l~~-----lp~~~~-~l~~L~~L~ls~n~l~~-----lp~~l~~l~~L~~L~ls~n~l~~l-p~~~~~~~~~lp~~L~ 348 (443)
|.++. +...+. ..++|++|++++|.++. ++..+..+++|++|++++|+++.. +..+........++|+
T Consensus 294 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~ 373 (461)
T 1z7x_W 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373 (461)
T ss_dssp CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceE
Confidence 88862 222222 23688999999998884 456677888999999999988543 2222211000125889
Q ss_pred ccccccCCCC
Q 046017 349 SLNLSVDSGN 358 (443)
Q Consensus 349 ~L~l~~N~l~ 358 (443)
+|++++|.++
T Consensus 374 ~L~L~~n~i~ 383 (461)
T 1z7x_W 374 VLWLADCDVS 383 (461)
T ss_dssp EEECTTSCCC
T ss_pred EEECCCCCCC
Confidence 9999988776
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=5.6e-24 Score=211.00 Aligned_cols=227 Identities=21% Similarity=0.242 Sum_probs=185.8
Q ss_pred CCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcEEe
Q 046017 18 RPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSELE 96 (443)
Q Consensus 18 ~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ 96 (443)
.++++.|++++|.+.+..+..|.++++|++|+|++|.+.+..+..|..+++|++|++++|.++.+|. .|..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 4689999999999766667889999999999999999877777889999999999999999998875 576666666665
Q ss_pred cCCCCCCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCccc
Q 046017 97 LKNSSEFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKR 175 (443)
Q Consensus 97 ls~~~~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~ 175 (443)
++ +|.++.+|. .+.++++|++|++++| +.+..++.
T Consensus 143 L~--------------~N~i~~~~~~~~~~l~~L~~L~l~~~----------------~~l~~i~~-------------- 178 (440)
T 3zyj_A 143 LR--------------NNPIESIPSYAFNRIPSLRRLDLGEL----------------KRLSYISE-------------- 178 (440)
T ss_dssp CC--------------SCCCCEECTTTTTTCTTCCEEECCCC----------------TTCCEECT--------------
T ss_pred CC--------------CCcccccCHHHhhhCcccCEeCCCCC----------------CCcceeCc--------------
Confidence 55 466777765 4677888888887775 33322221
Q ss_pred ccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecc
Q 046017 176 LSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAII 255 (443)
Q Consensus 176 l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~ 255 (443)
..+..+++|++|++++|.+. .+| .+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 179 -----------------~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 179 -----------------GAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239 (440)
T ss_dssp -----------------TTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred -----------------chhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence 24678889999999997665 455 47888999999999998888888889999999999999
Q ss_pred cccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCCCCC
Q 046017 256 DCKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLK 307 (443)
Q Consensus 256 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~ 307 (443)
+|++.+..+..+..+++|++|++++|+++.+|. .+..+++|+.|++++|.+.
T Consensus 240 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 999988878889999999999999999997765 4577899999999998876
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=5.2e-25 Score=205.55 Aligned_cols=206 Identities=17% Similarity=0.133 Sum_probs=164.1
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCc-hhhh-hhhhccCCCCcE
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAA-IREL-SQSLGQLALLSE 94 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~l-p~~~~~l~~L~~ 94 (443)
..+++++|++++|.+.+..+..|..+++|++|++++|.+.+..|..++.+++|++|++++|. ++.+ |..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 35689999999999666556779999999999999999877778899999999999999997 8776 567777766666
Q ss_pred EecCCCCCCCCccEEEEeCCCCccc-CccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCc
Q 046017 95 LELKNSSEFEYLRVLRVEGAAIREL-PESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGI 173 (443)
Q Consensus 95 L~ls~~~~l~~L~~L~l~~n~~~~l-p~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l 173 (443)
|++++ |.++.+ |..+.++++|++|++++|. ++.++
T Consensus 110 L~l~~--------------n~l~~~~~~~~~~l~~L~~L~l~~n~-----------------l~~~~------------- 145 (285)
T 1ozn_A 110 LHLDR--------------CGLQELGPGLFRGLAALQYLYLQDNA-----------------LQALP------------- 145 (285)
T ss_dssp EECTT--------------SCCCCCCTTTTTTCTTCCEEECCSSC-----------------CCCCC-------------
T ss_pred EECCC--------------CcCCEECHhHhhCCcCCCEEECCCCc-----------------ccccC-------------
Confidence 66655 666666 5557778888888888862 22211
Q ss_pred ccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEe
Q 046017 174 KRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLA 253 (443)
Q Consensus 174 ~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~ 253 (443)
+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 146 ------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 207 (285)
T 1ozn_A 146 ------------------DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207 (285)
T ss_dssp ------------------TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ------------------HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence 13366788899999998877765556688889999999999888887788888899999999
Q ss_pred cccccccccCCCCCCCCCCCceEEecCCCCc
Q 046017 254 IIDCKIFKRLPNELGNLKCLAALIVKGTAIR 284 (443)
Q Consensus 254 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 284 (443)
+++|.+.+..+..+..+++|++|++++|.+.
T Consensus 208 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 208 LFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 9999887655556888899999999999776
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=7.8e-24 Score=195.98 Aligned_cols=77 Identities=16% Similarity=0.181 Sum_probs=60.7
Q ss_pred CCCCccCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh
Q 046017 5 IPSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ 84 (443)
Q Consensus 5 ~~~c~~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~ 84 (443)
.++|.|.|..|......+.++++++. ++.+|..+. +++++|++++|.+.+..+..|+.+++|++|++++|.++.+|.
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~-l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~ 78 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKK-LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSC-CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCC-CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence 48999999999766789999999988 556776554 678999999988766555678888888888888877765553
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.1e-25 Score=223.68 Aligned_cols=236 Identities=13% Similarity=0.110 Sum_probs=193.5
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhhhhccCCCCcEEe
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQSLGQLALLSELE 96 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ 96 (443)
.+++|++|++++|.+.+..|..|..+++|++|+|++|.+.+..| ++.+++|++|++++|.++.+|..
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----------- 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----------- 98 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-----------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-----------
Confidence 34589999999999777777889999999999999999877665 89999999999999999877632
Q ss_pred cCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccc
Q 046017 97 LKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRL 176 (443)
Q Consensus 97 ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l 176 (443)
++|++|++++|.++.++.. .+++|++|++++|. ++
T Consensus 99 -------~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~-----------------l~------------------- 133 (487)
T 3oja_A 99 -------PSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-----------------IT------------------- 133 (487)
T ss_dssp -------TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSC-----------------CC-------------------
T ss_pred -------CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCC-----------------CC-------------------
Confidence 3555555566777776642 46777777777761 11
Q ss_pred cccccccCCCCCcccCCcccCCcccceeeccccccccccccccc-CCCCcceeeccCccCCCCCCchhhcCCCCCcEecc
Q 046017 177 SSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLG-QLALLCELKMIKCSSFESLPSSLCMLKSLTPLAII 255 (443)
Q Consensus 177 ~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~-~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~ 255 (443)
+..|..++.+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+. | ....+++|++|+++
T Consensus 134 ------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 134 ------------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLS 199 (487)
T ss_dssp ------------SGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECC
T ss_pred ------------CCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECC
Confidence 12244577889999999999999888887776 789999999999987765 3 23468999999999
Q ss_pred cccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCC--CCChhhhCCCCCCeeeCC
Q 046017 256 DCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLK--RTPESLYQLSSLKYLKPF 325 (443)
Q Consensus 256 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~--~lp~~l~~l~~L~~L~ls 325 (443)
+|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..++.|+.++++
T Consensus 200 ~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 200 SNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp SSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999965 555688999999999999999999999999999999999999998 677888889888888875
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=2.5e-25 Score=229.05 Aligned_cols=320 Identities=14% Similarity=0.035 Sum_probs=205.2
Q ss_pred cceEEecCCCCCC--cCCccccCCCCCcEEeccccccccc----cccccCCCCcccEEEeecCchh-----hhhhhhccC
Q 046017 21 SCGLRLKNCSSLE--SFPSSLCVLKSLRSLQIIDCKKFER----LLDELGNLETLLVLRVEGAAIR-----ELSQSLGQL 89 (443)
Q Consensus 21 L~~L~ls~~~~~~--~~p~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~-----~lp~~~~~l 89 (443)
|++|++++|.... .++.....+++|++|++++|.+.+. ++.....+++|++|++++|.++ .++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 8888888875211 2223334678888888888876543 4444556778888888887764 556666778
Q ss_pred CCCcEEecCCCC---------CCCCccEEEEeCCC-C---cccCccccCCCCCCEEeccCCCCC-------CCCCcCEEE
Q 046017 90 ALLSELELKNSS---------EFEYLRVLRVEGAA-I---RELPESIGKSTLLSELELKNCSEL-------KLKSLRRIK 149 (443)
Q Consensus 90 ~~L~~L~ls~~~---------~l~~L~~L~l~~n~-~---~~lp~~l~~l~~L~~L~l~~n~~~-------~l~~L~~L~ 149 (443)
++|++|++++|. .+++|++|+++.+. . ...+..+..+++|+.|+++++... .+++|++|+
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence 888888888764 45778888887543 1 233445667778888887765322 567788888
Q ss_pred ccCCCCCCC--C----CCCCCCccccc-cCcccccccccccCCCCCcccCCcccCCcccceeeccc----------cccc
Q 046017 150 MSKCSNLKR--F----PKIASCNKVGI-TGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIA----------CKKL 212 (443)
Q Consensus 150 l~~~~~l~~--~----~~~~~l~~L~l-~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~----------n~~~ 212 (443)
+++|. +.. + ....+++.|++ +.+.. ..++.....+++|++|++++ |+..
T Consensus 300 Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~-------------~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~ 365 (592)
T 3ogk_B 300 LLYAL-LETEDHCTLIQKCPNLEVLETRNVIGD-------------RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLV 365 (592)
T ss_dssp ETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHH-------------HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCC
T ss_pred cCCCc-CCHHHHHHHHHhCcCCCEEeccCccCH-------------HHHHHHHHhCCCCCEEEeecCccccccccccCcc
Confidence 88775 321 1 11144555544 11110 12223335677888998884 4333
Q ss_pred c-c-ccccccCCCCcceeeccCccCCCCCCchhhc-CCCCCcEeccc----cccccc-----CCCCCCCCCCCceEEecC
Q 046017 213 E-R-LPESLGQLALLCELKMIKCSSFESLPSSLCM-LKSLTPLAIID----CKIFKR-----LPNELGNLKCLAALIVKG 280 (443)
Q Consensus 213 ~-~-~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~-l~~L~~L~l~~----n~~~~~-----~~~~l~~l~~L~~L~l~~ 280 (443)
. . ++.....+++|++|+++.+.+.+..+..+.. +++|++|++++ |.+.+. ++..+.++++|++|++++
T Consensus 366 ~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 366 SQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 2 2 3333455788999998777776655555555 88899999873 334321 222255688899999976
Q ss_pred CC--Cc-c-cChhccCCCCCCEEEccCCCCC--CCChhhhCCCCCCeeeCCCCCCCc--cCcccccCCCCCccccccccc
Q 046017 281 TA--IR-E-VPESLGYLSSLAKLELSNNNLK--RTPESLYQLSSLKYLKPFENNSDR--IPEYLRSSPTSIPSELRSLNL 352 (443)
Q Consensus 281 n~--l~-~-lp~~~~~l~~L~~L~ls~n~l~--~lp~~l~~l~~L~~L~ls~n~l~~--lp~~~~~~~~~lp~~L~~L~l 352 (443)
|. ++ . +......+++|++|++++|+++ .++..+..+++|++|++++|.++. ++..+..+ ++|++|++
T Consensus 446 ~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l-----~~L~~L~l 520 (592)
T 3ogk_B 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL-----PSLRYLWV 520 (592)
T ss_dssp CGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC-----SSCCEEEE
T ss_pred CCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc-----CccCeeEC
Confidence 53 55 2 2222345788999999999887 355667788999999999988743 34433333 68999999
Q ss_pred ccCCCCc
Q 046017 353 SVDSGNS 359 (443)
Q Consensus 353 ~~N~l~~ 359 (443)
++|.++.
T Consensus 521 s~n~it~ 527 (592)
T 3ogk_B 521 QGYRASM 527 (592)
T ss_dssp ESCBCCT
T ss_pred cCCcCCH
Confidence 9987654
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=9.6e-23 Score=189.25 Aligned_cols=219 Identities=20% Similarity=0.167 Sum_probs=116.8
Q ss_pred eEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhhh-hhccCCCCcEEecCCCC
Q 046017 23 GLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELSQ-SLGQLALLSELELKNSS 101 (443)
Q Consensus 23 ~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~~~ 101 (443)
.++..+.. ...+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++.++. .|..+++|++|++++
T Consensus 11 ~~~c~~~~-l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-- 85 (276)
T 2z62_A 11 TYQCMELN-FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-- 85 (276)
T ss_dssp EEECTTSC-CSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT--
T ss_pred eEEecCCC-ccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC--
Confidence 34444433 445665443 467888888877665555567777788888877777765543 444444444444433
Q ss_pred CCCCccEEEEeCCCCcccC-ccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccc
Q 046017 102 EFEYLRVLRVEGAAIRELP-ESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTL 180 (443)
Q Consensus 102 ~l~~L~~L~l~~n~~~~lp-~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l 180 (443)
|.++.++ ..+.++++|++|++++|
T Consensus 86 ------------n~l~~~~~~~~~~l~~L~~L~l~~n------------------------------------------- 110 (276)
T 2z62_A 86 ------------NPIQSLALGAFSGLSSLQKLVAVET------------------------------------------- 110 (276)
T ss_dssp ------------CCCCEECTTTTTTCTTCCEEECTTS-------------------------------------------
T ss_pred ------------CccCccChhhhcCCccccEEECCCC-------------------------------------------
Confidence 4444443 33444555555555443
Q ss_pred cccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCC-CCCchhhcCCCCCcEecccccc
Q 046017 181 RLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFE-SLPSSLCMLKSLTPLAIIDCKI 259 (443)
Q Consensus 181 ~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~-~~p~~~~~l~~L~~L~l~~n~~ 259 (443)
.+.+..+..++.+++|++|++++|.+.+ .+|..+..+++|++|++++|++
T Consensus 111 -----------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 111 -----------------------------NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp -----------------------------CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred -----------------------------CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 3322222234444444445554444433 2344455555555555555554
Q ss_pred cccCCCCCCCCCCCc----eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCC
Q 046017 260 FKRLPNELGNLKCLA----ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSD 330 (443)
Q Consensus 260 ~~~~~~~l~~l~~L~----~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~ 330 (443)
.+..+..+..+++|+ .|++++|.++.++.......+|++|++++|+++.+|. .+..+++|++|++++|.+.
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 433333333333333 5666666666555544444566666666666666653 3455666666666666653
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=1.7e-22 Score=187.53 Aligned_cols=163 Identities=19% Similarity=0.182 Sum_probs=136.6
Q ss_pred cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccc-cCCCCCCCCCC
Q 046017 194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFK-RLPNELGNLKC 272 (443)
Q Consensus 194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~ 272 (443)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~ 150 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence 46778899999999988887777889999999999999998877666678899999999999999866 36888999999
Q ss_pred CceEEecCCCCcccC-hhccCCCCCC----EEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccc
Q 046017 273 LAALIVKGTAIREVP-ESLGYLSSLA----KLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSEL 347 (443)
Q Consensus 273 L~~L~l~~n~l~~lp-~~~~~l~~L~----~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L 347 (443)
|++|++++|+++.++ ..+..+++|+ .|++++|+++.++.......+|++|++++|+++.+|..+... + ++|
T Consensus 151 L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~---l-~~L 226 (276)
T 2z62_A 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR---L-TSL 226 (276)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTT---C-CSC
T ss_pred CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcc---c-ccc
Confidence 999999999999765 4455555565 899999999988876666779999999999999998765331 1 689
Q ss_pred cccccccCCCCcc
Q 046017 348 RSLNLSVDSGNSL 360 (443)
Q Consensus 348 ~~L~l~~N~l~~l 360 (443)
++|++++|.++.-
T Consensus 227 ~~L~l~~N~~~c~ 239 (276)
T 2z62_A 227 QKIWLHTNPWDCS 239 (276)
T ss_dssp CEEECCSSCBCCC
T ss_pred cEEEccCCccccc
Confidence 9999999987653
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=9.8e-22 Score=181.84 Aligned_cols=162 Identities=25% Similarity=0.254 Sum_probs=114.0
Q ss_pred cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017 194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL 273 (443)
Q Consensus 194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 273 (443)
.+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 135 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence 35566667777776666554444445667777777777776665555566777777778887777766556667777888
Q ss_pred ceEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccc
Q 046017 274 AALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLN 351 (443)
Q Consensus 274 ~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~ 351 (443)
++|++++|.++.+|.. +..+++|++|++++|+++.+|. .+..+++|++|++++|+++.+|...... + ++|+.|+
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---l-~~L~~L~ 211 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS---L-EKLKMLQ 211 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT---C-TTCCEEE
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc---c-cCCCEEE
Confidence 8888888888777654 6777888888888888887764 4777888888888888887777653221 1 5788888
Q ss_pred cccCCCCc
Q 046017 352 LSVDSGNS 359 (443)
Q Consensus 352 l~~N~l~~ 359 (443)
+++|.+..
T Consensus 212 l~~N~~~c 219 (270)
T 2o6q_A 212 LQENPWDC 219 (270)
T ss_dssp CCSSCBCC
T ss_pred ecCCCeeC
Confidence 88886544
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=5.5e-22 Score=185.32 Aligned_cols=158 Identities=27% Similarity=0.216 Sum_probs=114.4
Q ss_pred cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017 194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL 273 (443)
Q Consensus 194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 273 (443)
.+..+++|++|++++|.+.+. +.. +.+++|++|++++|.+. .+|..+..+++|++|++++|++.+..+..+..+++|
T Consensus 50 ~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L 126 (290)
T 1p9a_G 50 TLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL 126 (290)
T ss_dssp GGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC
T ss_pred HhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC
Confidence 355566666666666554443 222 56677777777776554 566667777788888888887765555667788888
Q ss_pred ceEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccc
Q 046017 274 AALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLN 351 (443)
Q Consensus 274 ~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~ 351 (443)
++|++++|+++.+|.. +..+++|+.|++++|+++.+|. .+..+++|++|++++|+++.+|..++.. .+|+.++
T Consensus 127 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~-----~~L~~l~ 201 (290)
T 1p9a_G 127 QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS-----HLLPFAF 201 (290)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----CCCSEEE
T ss_pred CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhccc-----ccCCeEE
Confidence 8888888888876654 4677888888888888888775 4567888888888888888888877664 5788888
Q ss_pred cccCCCCc
Q 046017 352 LSVDSGNS 359 (443)
Q Consensus 352 l~~N~l~~ 359 (443)
+++|.+..
T Consensus 202 L~~Np~~C 209 (290)
T 1p9a_G 202 LHGNPWLC 209 (290)
T ss_dssp CCSCCBCC
T ss_pred eCCCCccC
Confidence 88886643
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1e-21 Score=183.43 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=38.4
Q ss_pred cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS 83 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp 83 (443)
.+++++++++++++ ++.+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.++.++
T Consensus 8 ~l~~l~~l~~~~~~-l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 71 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71 (290)
T ss_dssp CSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred ccCCccEEECCCCC-CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc
Confidence 35566777776665 445554443 46666666666665555556666666666666666555443
No 76
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=3.5e-24 Score=220.45 Aligned_cols=323 Identities=15% Similarity=0.110 Sum_probs=185.7
Q ss_pred cCCCcceEEecCCCCC---CcCCcccc------------CCCCCcEEeccccccccccccccCC-CC-cccEEEeecCc-
Q 046017 17 ERPCSCGLRLKNCSSL---ESFPSSLC------------VLKSLRSLQIIDCKKFERLLDELGN-LE-TLLVLRVEGAA- 78 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~---~~~p~~~~------------~l~~L~~L~L~~n~~~~~~p~~~~~-l~-~L~~L~l~~n~- 78 (443)
.+++|++|++++|... +.+|..++ .+++|++|+|++|.+.+..+..++. ++ +|++|+++++.
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~ 150 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG 150 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC
Confidence 5889999999886532 23332222 6889999999998876665555655 34 49999998865
Q ss_pred hh--hhhhhhccCCCCcEEecCCCC--------------CCCCccEEEEeCCCCc-----ccCccccCCCCCCEEeccCC
Q 046017 79 IR--ELSQSLGQLALLSELELKNSS--------------EFEYLRVLRVEGAAIR-----ELPESIGKSTLLSELELKNC 137 (443)
Q Consensus 79 l~--~lp~~~~~l~~L~~L~ls~~~--------------~l~~L~~L~l~~n~~~-----~lp~~l~~l~~L~~L~l~~n 137 (443)
++ .++.....+++|++|++++|. .+++|++|++++|.++ .++..+.++++|++|++++|
T Consensus 151 ~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 230 (592)
T 3ogk_B 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF 230 (592)
T ss_dssp EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence 32 455556688999999999884 3589999999998875 34455567899999999998
Q ss_pred CCC-------CCCCcCEEEccCCCCCCCCC---CC----CCCccccccCcccccccccccCCCCCcccCCcccCCcccce
Q 046017 138 SEL-------KLKSLRRIKMSKCSNLKRFP---KI----ASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRF 203 (443)
Q Consensus 138 ~~~-------~l~~L~~L~l~~~~~l~~~~---~~----~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~ 203 (443)
... .+++|++|+++.+......+ .. .+++.+++.... ...+|..+..+++|++
T Consensus 231 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 231 EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-------------PNEMPILFPFAAQIRK 297 (592)
T ss_dssp BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-------------TTTGGGGGGGGGGCCE
T ss_pred cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-------------hhHHHHHHhhcCCCcE
Confidence 654 67889999998643331111 11 334444442211 1223333444455555
Q ss_pred eecccccccc-------------------------cccccccCCCCcceeeccC----------ccCCC-C-CCchhhcC
Q 046017 204 LETIACKKLE-------------------------RLPESLGQLALLCELKMIK----------CSSFE-S-LPSSLCML 246 (443)
Q Consensus 204 L~ls~n~~~~-------------------------~~p~~l~~l~~L~~L~ls~----------n~~~~-~-~p~~~~~l 246 (443)
|++++|.+.. .++.....+++|++|++++ |...+ . ++.....+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 5555544322 2222223344555555552 22111 1 11122335
Q ss_pred CCCCcEecccccccccCCCCCCC-CCCCceEEec----CCCCccc------ChhccCCCCCCEEEccCCC--CC-CCChh
Q 046017 247 KSLTPLAIIDCKIFKRLPNELGN-LKCLAALIVK----GTAIREV------PESLGYLSSLAKLELSNNN--LK-RTPES 312 (443)
Q Consensus 247 ~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~----~n~l~~l------p~~~~~l~~L~~L~ls~n~--l~-~lp~~ 312 (443)
++|++|+++.+.+.+..+..+.. +++|++|+++ .|.++.. +..+..+++|+.|++++|. ++ ..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 55555555544444333333332 5566666664 3355532 2234456666666665432 33 11122
Q ss_pred -hhCCCCCCeeeCCCCCCCc--cCcccccCCCCCcccccccccccCCC
Q 046017 313 -LYQLSSLKYLKPFENNSDR--IPEYLRSSPTSIPSELRSLNLSVDSG 357 (443)
Q Consensus 313 -l~~l~~L~~L~ls~n~l~~--lp~~~~~~~~~lp~~L~~L~l~~N~l 357 (443)
...+++|++|++++|+++. ++..+..+ ++|++|++++|.+
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~-----~~L~~L~l~~n~l 500 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGC-----PNLQKLEMRGCCF 500 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCC-----TTCCEEEEESCCC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcC-----cccCeeeccCCCC
Confidence 2346777777777777643 33333332 5777777777764
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.5e-21 Score=177.27 Aligned_cols=152 Identities=18% Similarity=0.121 Sum_probs=89.3
Q ss_pred ccCCcccceeeccc-ccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCC---cEecccc-cccccCCCCCCC
Q 046017 195 LCMLKSLRFLETIA-CKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLT---PLAIIDC-KIFKRLPNELGN 269 (443)
Q Consensus 195 ~~~l~~L~~L~ls~-n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~---~L~l~~n-~~~~~~~~~l~~ 269 (443)
+..+++|++|++++ |.+.+..+..+..+++|++|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..+..
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence 44445555555554 33333333445555556666665555443 443 55555555 6666666 554433445666
Q ss_pred CCCCc-eEEecCCCCcccChhccCCCCCCEEEccCCC-CCCCC-hhhhCC-CCCCeeeCCCCCCCccCcccccCCCCCcc
Q 046017 270 LKCLA-ALIVKGTAIREVPESLGYLSSLAKLELSNNN-LKRTP-ESLYQL-SSLKYLKPFENNSDRIPEYLRSSPTSIPS 345 (443)
Q Consensus 270 l~~L~-~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~-l~~lp-~~l~~l-~~L~~L~ls~n~l~~lp~~~~~~~~~lp~ 345 (443)
+++|+ +|++++|+++.+|......++|+.|++++|+ ++.+| ..+..+ ++|++|++++|+++.+|.. . .+
T Consensus 154 l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~-----~~ 226 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--G-----LE 226 (239)
T ss_dssp TBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--T-----CT
T ss_pred hhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--H-----hc
Confidence 67777 7777777777666554444667777777774 76664 446666 7777777777777777664 1 14
Q ss_pred cccccccccC
Q 046017 346 ELRSLNLSVD 355 (443)
Q Consensus 346 ~L~~L~l~~N 355 (443)
+|+.|+++++
T Consensus 227 ~L~~L~l~~~ 236 (239)
T 2xwt_C 227 HLKELIARNT 236 (239)
T ss_dssp TCSEEECTTC
T ss_pred cCceeeccCc
Confidence 6777776654
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=5e-23 Score=196.67 Aligned_cols=234 Identities=17% Similarity=0.141 Sum_probs=144.7
Q ss_pred CCCccCCCCCccCCCcceEEecCCCCCCcCCccccCC--CCCcEEeccccccccccccccCCCCcccEEEeecCchh--h
Q 046017 6 PSCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVL--KSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIR--E 81 (443)
Q Consensus 6 ~~c~~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l--~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~--~ 81 (443)
-|.+|.++.+. ...++.++++++.+. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.++ .
T Consensus 35 vc~~W~~~~~~-~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 35 VCKRWYRLASD-ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp SCHHHHHHHTC-STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHHhcC-chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 45567766542 346889999987643 4556666 8899999999887665554 567899999999998886 2
Q ss_pred hhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCc-ccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCC
Q 046017 82 LSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIR-ELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFP 160 (443)
Q Consensus 82 lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~-~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~ 160 (443)
+|..+..+++|++|++++ |.++ ..|..+..+++|++|++++| ..++.
T Consensus 110 ~~~~~~~~~~L~~L~L~~--------------~~l~~~~~~~l~~~~~L~~L~L~~~----------------~~l~~-- 157 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEG--------------LRLSDPIVNTLAKNSNLVRLNLSGC----------------SGFSE-- 157 (336)
T ss_dssp HHHHHTTBCCCSEEECTT--------------CBCCHHHHHHHTTCTTCSEEECTTC----------------BSCCH--
T ss_pred HHHHHhhCCCCCEEeCcC--------------cccCHHHHHHHhcCCCCCEEECCCC----------------CCCCH--
Confidence 777777777777776665 4433 44555666777777777665 11110
Q ss_pred CCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccc-ccccc-ccccccCCC-CcceeeccCcc--C
Q 046017 161 KIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIAC-KKLER-LPESLGQLA-LLCELKMIKCS--S 235 (443)
Q Consensus 161 ~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n-~~~~~-~p~~l~~l~-~L~~L~ls~n~--~ 235 (443)
..++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|. +
T Consensus 158 ----------------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~ 209 (336)
T 2ast_B 158 ----------------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNL 209 (336)
T ss_dssp ----------------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGS
T ss_pred ----------------------------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccC
Confidence 013334556667777777776 54432 455566666 77777777763 3
Q ss_pred C-CCCCchhhcCCCCCcEeccccc-ccccCCCCCCCCCCCceEEecCCC-Cc-ccChhccCCCCCCEEEccCC
Q 046017 236 F-ESLPSSLCMLKSLTPLAIIDCK-IFKRLPNELGNLKCLAALIVKGTA-IR-EVPESLGYLSSLAKLELSNN 304 (443)
Q Consensus 236 ~-~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-l~-~lp~~~~~l~~L~~L~ls~n 304 (443)
. +.++..+..+++|++|++++|. +.+..+..+..+++|++|++++|. +. .....+..+++|+.|++++|
T Consensus 210 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 210 QKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 2 3445555666666666666666 433444455555666666666652 22 11123445555555555555
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1e-21 Score=185.21 Aligned_cols=134 Identities=22% Similarity=0.263 Sum_probs=93.5
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+ ++. +..+++|+
T Consensus 103 ~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 176 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLT 176 (308)
T ss_dssp GTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCC
T ss_pred hcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCC
Confidence 4455566666666655443 22 266667777777777665443 22 6677777788887777744 333 67778888
Q ss_pred eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCccc
Q 046017 275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYL 336 (443)
Q Consensus 275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~ 336 (443)
+|++++|.++.++. +..+++|++|++++|+++.+++ +..+++|++|++++|+++..|..+
T Consensus 177 ~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 177 TLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp EEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred EEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCeee
Confidence 88888888877765 6778888888888888887774 778888888888888887776643
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.3e-21 Score=184.59 Aligned_cols=156 Identities=19% Similarity=0.197 Sum_probs=133.8
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+ ++. +..+++|+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~ 154 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQ 154 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCC
T ss_pred HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCcc
Confidence 6677888888888877554 33 68899999999999998765 44 38899999999999999865 333 88899999
Q ss_pred eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccccc
Q 046017 275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSV 354 (443)
Q Consensus 275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~ 354 (443)
+|++++|.++.++. +..+++|+.|++++|+++.++. +..+++|++|++++|+++.+++ +..+ ++|++|++++
T Consensus 155 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l-----~~L~~L~l~~ 226 (308)
T 1h6u_A 155 YLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANT-----SNLFIVTLTN 226 (308)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTC-----TTCCEEEEEE
T ss_pred EEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCC-----CCCCEEEccC
Confidence 99999999998887 8999999999999999999886 8999999999999999998885 5444 7999999999
Q ss_pred CCCCcccCCh
Q 046017 355 DSGNSLNLDL 364 (443)
Q Consensus 355 N~l~~l~~~~ 364 (443)
|.++..|..+
T Consensus 227 N~i~~~~~~~ 236 (308)
T 1h6u_A 227 QTITNQPVFY 236 (308)
T ss_dssp EEEECCCEEC
T ss_pred CeeecCCeee
Confidence 9888776554
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.4e-23 Score=202.93 Aligned_cols=46 Identities=11% Similarity=0.041 Sum_probs=29.3
Q ss_pred cCCccccCCCCCcEEeccccccccc----cccccCCCCcccEEEeecCch
Q 046017 34 SFPSSLCVLKSLRSLQIIDCKKFER----LLDELGNLETLLVLRVEGAAI 79 (443)
Q Consensus 34 ~~p~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l 79 (443)
.++..+..+++|++|++++|.+... ++..+..+++|++|++++|.+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~ 72 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 72 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc
Confidence 4555566677777777777766543 334466677777777777543
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=6.6e-21 Score=176.42 Aligned_cols=163 Identities=20% Similarity=0.227 Sum_probs=119.8
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 56677788888888777766666677888888888888877766666677888888888888887665555677888888
Q ss_pred eEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccc
Q 046017 275 ALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNL 352 (443)
Q Consensus 275 ~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l 352 (443)
+|++++|+++.++.. +..+++|++|++++|+++.++. .+..+++|++|++++|.+..- . ++|+.+++
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----------~-~~l~~l~~ 229 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----------C-PGIRYLSE 229 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----------T-TTTHHHHH
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----------C-cHHHHHHH
Confidence 888888888866654 5778888888888888887764 467888888888888876421 1 46777887
Q ss_pred ccCCCC-cccCChhhhh
Q 046017 353 SVDSGN-SLNLDLNKLS 368 (443)
Q Consensus 353 ~~N~l~-~l~~~~~~l~ 368 (443)
+.|.++ .+|..+.++.
T Consensus 230 ~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 230 WINKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHHHTGGGBBCTTSCBC
T ss_pred HHHhCCCcccCcccccC
Confidence 777443 4566555443
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=5.2e-21 Score=180.62 Aligned_cols=223 Identities=19% Similarity=0.159 Sum_probs=120.5
Q ss_pred CcccEEEeecCchh-----hhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCc-ccCccc--cCCCCCCEEeccCCC
Q 046017 67 ETLLVLRVEGAAIR-----ELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIR-ELPESI--GKSTLLSELELKNCS 138 (443)
Q Consensus 67 ~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~-~lp~~l--~~l~~L~~L~l~~n~ 138 (443)
..++.+.+.+..++ .++..+ .+ ++|++|++++|.++ ..|..+ ..+++|++|++++|.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~-~~--------------~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 128 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVL-AY--------------SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS 128 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHH-HH--------------SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhc-cc--------------CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc
Confidence 35778888876664 222211 12 34666666677755 556666 778888888888874
Q ss_pred CCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccC-CcccCCcccceeecccccccccccc
Q 046017 139 ELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLP-SSLCMLKSLRFLETIACKKLERLPE 217 (443)
Q Consensus 139 ~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp-~~~~~l~~L~~L~ls~n~~~~~~p~ 217 (443)
+.. ..+ .++ ..+..+++|++|++++|.+.+..+.
T Consensus 129 i~~----------------~~~-----------------------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 163 (310)
T 4glp_A 129 WAT----------------GRS-----------------------------WLAELQQWLKPGLKVLSIAQAHSPAFSCE 163 (310)
T ss_dssp CSS----------------TTS-----------------------------SHHHHHTTBCSCCCEEEEECCSSCCCCTT
T ss_pred ccc----------------hhh-----------------------------hhHHHHhhhccCCCEEEeeCCCcchhhHH
Confidence 321 000 000 1123455566666666555555555
Q ss_pred cccCCCCcceeeccCccCCCC--C--CchhhcCCCCCcEecccccccccCCC----CCCCCCCCceEEecCCCCccc-Ch
Q 046017 218 SLGQLALLCELKMIKCSSFES--L--PSSLCMLKSLTPLAIIDCKIFKRLPN----ELGNLKCLAALIVKGTAIREV-PE 288 (443)
Q Consensus 218 ~l~~l~~L~~L~ls~n~~~~~--~--p~~~~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~~l-p~ 288 (443)
.++.+++|++|++++|.+.+. + +..+..+++|++|++++|++. .++. .+..+++|++|++++|+++.+ |.
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 555666666666666554331 1 112245556666666666552 1221 124455666666666666544 44
Q ss_pred hccCC---CCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017 289 SLGYL---SSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 289 ~~~~l---~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
.+..+ ++|++|++++|+++.+|..+. ++|++|++++|+++.+|. +..+ ++|++|++++|.++
T Consensus 243 ~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l-----~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDEL-----PEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSC-----CCCSCEECSSTTTS
T ss_pred hHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhC-----CCccEEECcCCCCC
Confidence 44444 466666666666666665442 566666666666665544 2222 46666666666543
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.3e-21 Score=181.97 Aligned_cols=160 Identities=19% Similarity=0.101 Sum_probs=136.3
Q ss_pred cCCcccceeeccccccccccc----ccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccccccccc--C--CCCC
Q 046017 196 CMLKSLRFLETIACKKLERLP----ESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKR--L--PNEL 267 (443)
Q Consensus 196 ~~l~~L~~L~ls~n~~~~~~p----~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~--~--~~~l 267 (443)
..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 788999999999999887554 3455789999999999999888888999999999999999987652 2 2345
Q ss_pred CCCCCCceEEecCCCCcccChh----ccCCCCCCEEEccCCCCCCC-ChhhhCC---CCCCeeeCCCCCCCccCcccccC
Q 046017 268 GNLKCLAALIVKGTAIREVPES----LGYLSSLAKLELSNNNLKRT-PESLYQL---SSLKYLKPFENNSDRIPEYLRSS 339 (443)
Q Consensus 268 ~~l~~L~~L~l~~n~l~~lp~~----~~~l~~L~~L~ls~n~l~~l-p~~l~~l---~~L~~L~ls~n~l~~lp~~~~~~ 339 (443)
..+++|++|++++|+++.++.. +..+++|++|++++|+++.+ |..+..+ ++|++|++++|+++.+|..+
T Consensus 194 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--- 270 (310)
T 4glp_A 194 HKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--- 270 (310)
T ss_dssp TSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---
T ss_pred hcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---
Confidence 7899999999999999877653 57789999999999999976 7767666 69999999999999998863
Q ss_pred CCCCcccccccccccCCCCcccC
Q 046017 340 PTSIPSELRSLNLSVDSGNSLNL 362 (443)
Q Consensus 340 ~~~lp~~L~~L~l~~N~l~~l~~ 362 (443)
+++|++|++++|.++.+|.
T Consensus 271 ----~~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 271 ----PAKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp ----CSCCSCEECCSCCCCSCCC
T ss_pred ----cCCCCEEECCCCcCCCCch
Confidence 4799999999999988754
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.1e-20 Score=171.56 Aligned_cols=202 Identities=17% Similarity=0.168 Sum_probs=111.2
Q ss_pred CCcCCccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCc-hhhhhh-hhccCCCCcEEecCCCCCCCCccEE
Q 046017 32 LESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAA-IRELSQ-SLGQLALLSELELKNSSEFEYLRVL 109 (443)
Q Consensus 32 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~lp~-~~~~l~~L~~L~ls~~~~l~~L~~L 109 (443)
.+.+|. +. ++|++|++++|.+.+..+..|+.+++|++|++++|. ++.++. .|.++++| ++|
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L--------------~~L 85 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV--------------THI 85 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTC--------------CEE
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCC--------------cEE
Confidence 556666 33 378888888887665555577788888888888876 766653 45444433 333
Q ss_pred EEeC-CCCcccCc-cccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCC
Q 046017 110 RVEG-AAIRELPE-SIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSS 187 (443)
Q Consensus 110 ~l~~-n~~~~lp~-~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~ 187 (443)
++++ |.++.+|. .+.++++|++|++++|
T Consensus 86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-------------------------------------------------- 115 (239)
T 2xwt_C 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNT-------------------------------------------------- 115 (239)
T ss_dssp EEEEETTCCEECTTSEECCTTCCEEEEEEE--------------------------------------------------
T ss_pred ECCCCCCeeEcCHHHhCCCCCCCEEeCCCC--------------------------------------------------
Confidence 4444 44555543 3455555555555554
Q ss_pred CcccCCcccCCcccceeecccccccccccccccCCCCcc---eeeccCc-cCCCCCCchhhcCCCCC-cEeccccccccc
Q 046017 188 LESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLC---ELKMIKC-SSFESLPSSLCMLKSLT-PLAIIDCKIFKR 262 (443)
Q Consensus 188 l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~---~L~ls~n-~~~~~~p~~~~~l~~L~-~L~l~~n~~~~~ 262 (443)
.+.+ +|. +..+++|+ +|++++| .+.+..+..+..+++|+ +|++++|++. .
T Consensus 116 ----------------------~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~ 170 (239)
T 2xwt_C 116 ----------------------GLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-S 170 (239)
T ss_dssp ----------------------CCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-E
T ss_pred ----------------------CCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-c
Confidence 2222 222 33333333 4444444 33222223344455555 5555555553 3
Q ss_pred CCCCCCCCCCCceEEecCC-CCcccC-hhccCC-CCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCC
Q 046017 263 LPNELGNLKCLAALIVKGT-AIREVP-ESLGYL-SSLAKLELSNNNLKRTPESLYQLSSLKYLKPFEN 327 (443)
Q Consensus 263 ~~~~l~~l~~L~~L~l~~n-~l~~lp-~~~~~l-~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n 327 (443)
+|......++|++|++++| .++.+| ..+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 3333222256666666666 366554 335556 6677777777777666653 5666677766653
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=3.5e-21 Score=178.32 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=102.5
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+..+..+++|+
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 45666777777777766665556677778888888888777666566677788888888888887665555677888888
Q ss_pred eEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCC-CccCccccc
Q 046017 275 ALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNS-DRIPEYLRS 338 (443)
Q Consensus 275 ~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l-~~lp~~~~~ 338 (443)
+|++++|.++.++.. +..+++|+.|++++|.+.. .++.|+.|++..|.+ +.+|..++.
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------CTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------cCcHHHHHHHHHHhCCCcccCcccc
Confidence 888888888866543 6778888888888887663 355788888888777 577776654
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.6e-22 Score=197.06 Aligned_cols=245 Identities=16% Similarity=0.140 Sum_probs=172.6
Q ss_pred cccccccCCCCcccEEEeecCchhh-----hhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCC-cccCccc-------
Q 046017 57 ERLLDELGNLETLLVLRVEGAAIRE-----LSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAI-RELPESI------- 123 (443)
Q Consensus 57 ~~~p~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~-~~lp~~l------- 123 (443)
..++..+..+++|++|++++|.++. ++..+..+++|++|++++|.. +.+ +.+|..+
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~-----------~~l~~~~~~~~~~l~~~l 90 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT-----------GRVKDEIPEALRLLLQAL 90 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT-----------TSCGGGSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc-----------CccccchhHHHHHHHHHH
Confidence 4677778889999999999998863 344566777777777766420 111 1334333
Q ss_pred cCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccce
Q 046017 124 GKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRF 203 (443)
Q Consensus 124 ~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~ 203 (443)
..+++|++|++++|. ++. .....+|..+..+++|++
T Consensus 91 ~~~~~L~~L~Ls~n~-----------------l~~---------------------------~~~~~l~~~l~~~~~L~~ 126 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNA-----------------FGP---------------------------TAQEPLIDFLSKHTPLEH 126 (386)
T ss_dssp TTCTTCCEEECCSCC-----------------CCT---------------------------TTHHHHHHHHHHCTTCCE
T ss_pred hhCCcccEEECCCCc-----------------CCH---------------------------HHHHHHHHHHHhCCCCCE
Confidence 567777777777762 110 111235556677888888
Q ss_pred eeccccccccccc----ccccCC---------CCcceeeccCccCC-CCCC---chhhcCCCCCcEecccccccc-----
Q 046017 204 LETIACKKLERLP----ESLGQL---------ALLCELKMIKCSSF-ESLP---SSLCMLKSLTPLAIIDCKIFK----- 261 (443)
Q Consensus 204 L~ls~n~~~~~~p----~~l~~l---------~~L~~L~ls~n~~~-~~~p---~~~~~l~~L~~L~l~~n~~~~----- 261 (443)
|++++|.+....+ ..+..+ ++|++|++++|.+. ..++ ..+..+++|++|++++|.+..
T Consensus 127 L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~ 206 (386)
T 2ca6_A 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206 (386)
T ss_dssp EECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred EECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH
Confidence 8888887754333 333333 78999999988876 3444 456678899999999988752
Q ss_pred cCCCCCCCCCCCceEEecCCCC-----cccChhccCCCCCCEEEccCCCCCC-----CChhhhC--CCCCCeeeCCCCCC
Q 046017 262 RLPNELGNLKCLAALIVKGTAI-----REVPESLGYLSSLAKLELSNNNLKR-----TPESLYQ--LSSLKYLKPFENNS 329 (443)
Q Consensus 262 ~~~~~l~~l~~L~~L~l~~n~l-----~~lp~~~~~l~~L~~L~ls~n~l~~-----lp~~l~~--l~~L~~L~ls~n~l 329 (443)
..+..+..+++|++|++++|.+ ..+|..+..+++|++|++++|.++. ++..+.. +++|++|++++|.+
T Consensus 207 l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 207 LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 2344677888999999999988 4677788888999999999999884 3566644 88999999999998
Q ss_pred Cc-----cCccc-ccCCCCCcccccccccccCCCCccc
Q 046017 330 DR-----IPEYL-RSSPTSIPSELRSLNLSVDSGNSLN 361 (443)
Q Consensus 330 ~~-----lp~~~-~~~~~~lp~~L~~L~l~~N~l~~l~ 361 (443)
+. +|..+ ..+ ++|++|++++|.++...
T Consensus 287 ~~~g~~~l~~~l~~~l-----~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 287 ELDAVRTLKTVIDEKM-----PDLLFLELNGNRFSEED 319 (386)
T ss_dssp BHHHHHHHHHHHHHHC-----TTCCEEECTTSBSCTTS
T ss_pred CHHHHHHHHHHHHhcC-----CCceEEEccCCcCCcch
Confidence 76 77766 323 68999999999877543
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=4e-20 Score=169.08 Aligned_cols=173 Identities=18% Similarity=0.214 Sum_probs=147.7
Q ss_pred cccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCC
Q 046017 189 ESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELG 268 (443)
Q Consensus 189 ~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 268 (443)
..+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.
T Consensus 27 ~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 104 (251)
T 3m19_A 27 DSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD 104 (251)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc
Confidence 44454443 5899999999998888888899999999999999999888888899999999999999999876667789
Q ss_pred CCCCCceEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcc-cccCCCCCcc
Q 046017 269 NLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEY-LRSSPTSIPS 345 (443)
Q Consensus 269 ~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~-~~~~~~~lp~ 345 (443)
.+++|++|++++|+++.+|.. +..+++|++|++++|+++.+|. .+..+++|++|++++|+++.+|.. +..+ +
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~ 179 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRL-----G 179 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----T
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCC-----C
Confidence 999999999999999988765 5889999999999999999886 689999999999999999988864 4333 6
Q ss_pred cccccccccCCCCcccCChhhhh
Q 046017 346 ELRSLNLSVDSGNSLNLDLNKLS 368 (443)
Q Consensus 346 ~L~~L~l~~N~l~~l~~~~~~l~ 368 (443)
+|++|++++|.+..-+..+..+.
T Consensus 180 ~L~~L~l~~N~~~c~~~~~~~l~ 202 (251)
T 3m19_A 180 KLQTITLFGNQFDCSRCEILYLS 202 (251)
T ss_dssp TCCEEECCSCCBCTTSTTHHHHH
T ss_pred CCCEEEeeCCceeCCccccHHHH
Confidence 89999999998876544444333
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=6.3e-22 Score=191.11 Aligned_cols=250 Identities=12% Similarity=0.063 Sum_probs=136.8
Q ss_pred eEEecCCCCCCcCCccccCCCCCcEEeccccccccccc----cccCCCC-cccEEEeecCchhhh-hhhhccC-----CC
Q 046017 23 GLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLL----DELGNLE-TLLVLRVEGAAIREL-SQSLGQL-----AL 91 (443)
Q Consensus 23 ~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p----~~~~~l~-~L~~L~l~~n~l~~l-p~~~~~l-----~~ 91 (443)
.++++.+.+.+.+|..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45778888777777766666679999999888665544 6677788 889999998888743 4444443 55
Q ss_pred CcEEecCCCCCCCCccEEEEeCCCCcccCcc-----ccCC-CCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCC
Q 046017 92 LSELELKNSSEFEYLRVLRVEGAAIRELPES-----IGKS-TLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASC 165 (443)
Q Consensus 92 L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~-----l~~l-~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l 165 (443)
|++|++++ |.++..+.. +..+ ++|++|++++|.+. ..+.
T Consensus 82 L~~L~Ls~--------------n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-----------------~~~~---- 126 (362)
T 3goz_A 82 VTSLNLSG--------------NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS-----------------SKSS---- 126 (362)
T ss_dssp CCEEECCS--------------SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-----------------GSCH----
T ss_pred ccEEECcC--------------CcCChHHHHHHHHHHHhCCCCccEEECcCCcCC-----------------cHHH----
Confidence 55555544 555543322 3334 56666666665221 0000
Q ss_pred ccccccCcccccccccccCCCCCcccCCcccC-Ccccceeecccccccc----cccccccCCC-CcceeeccCccCCCCC
Q 046017 166 NKVGITGIKRLSSTLRLKNCSSLESLPSSLCM-LKSLRFLETIACKKLE----RLPESLGQLA-LLCELKMIKCSSFESL 239 (443)
Q Consensus 166 ~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~-l~~L~~L~ls~n~~~~----~~p~~l~~l~-~L~~L~ls~n~~~~~~ 239 (443)
..+...+.. .++|++|++++|.+.. .++..+..++ +|++|++++|.+.+..
T Consensus 127 -----------------------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 127 -----------------------SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp -----------------------HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred -----------------------HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 011111222 2356666666555443 2223333343 5666666666554444
Q ss_pred Cchhh----cC-CCCCcEeccccccccc----CCCCCCC-CCCCceEEecCCCCcccC-----hhccCCCCCCEEEccCC
Q 046017 240 PSSLC----ML-KSLTPLAIIDCKIFKR----LPNELGN-LKCLAALIVKGTAIREVP-----ESLGYLSSLAKLELSNN 304 (443)
Q Consensus 240 p~~~~----~l-~~L~~L~l~~n~~~~~----~~~~l~~-l~~L~~L~l~~n~l~~lp-----~~~~~l~~L~~L~ls~n 304 (443)
+..+. .. ++|++|++++|.+... ++..+.. .++|++|++++|.++..+ ..+..+++|++|++++|
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 33222 23 3666666666655431 2222333 235666666666665332 23345566666666666
Q ss_pred CCCCC--------ChhhhCCCCCCeeeCCCCCCC
Q 046017 305 NLKRT--------PESLYQLSSLKYLKPFENNSD 330 (443)
Q Consensus 305 ~l~~l--------p~~l~~l~~L~~L~ls~n~l~ 330 (443)
.+..+ +..+..+++|++||+++|+++
T Consensus 264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred CccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 64332 223455666666666666664
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=6.2e-20 Score=167.77 Aligned_cols=178 Identities=18% Similarity=0.216 Sum_probs=144.1
Q ss_pred CccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccC
Q 046017 105 YLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKN 184 (443)
Q Consensus 105 ~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~ 184 (443)
..++++++++.++.+|..+. +.+++|++++| .+..+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n-----------------~l~~~------------------------- 50 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQST-----------------GLATL------------------------- 50 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTS-----------------CCCCC-------------------------
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCC-----------------CcCcc-------------------------
Confidence 45566666777788887654 56777777765 12211
Q ss_pred CCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCC
Q 046017 185 CSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLP 264 (443)
Q Consensus 185 ~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 264 (443)
.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+..+
T Consensus 51 ------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 124 (251)
T 3m19_A 51 ------SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124 (251)
T ss_dssp ------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ------CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcCh
Confidence 12346788899999999988888777778899999999999998887777788899999999999999876555
Q ss_pred CCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCcc
Q 046017 265 NELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRI 332 (443)
Q Consensus 265 ~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~l 332 (443)
..+..+++|++|++++|+++.+|. .+..+++|++|++++|+++.+|. .+..+++|++|++++|.+..-
T Consensus 125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 667889999999999999998876 58889999999999999998874 788999999999999998644
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.8e-22 Score=189.80 Aligned_cols=161 Identities=19% Similarity=0.231 Sum_probs=87.5
Q ss_pred CcccCCcccceeeccccc-ccc-cccccccCCCCcceeeccCc-cCCCC-CCchhhcCC-CCCcEeccccc--cc-ccCC
Q 046017 193 SSLCMLKSLRFLETIACK-KLE-RLPESLGQLALLCELKMIKC-SSFES-LPSSLCMLK-SLTPLAIIDCK--IF-KRLP 264 (443)
Q Consensus 193 ~~~~~l~~L~~L~ls~n~-~~~-~~p~~l~~l~~L~~L~ls~n-~~~~~-~p~~~~~l~-~L~~L~l~~n~--~~-~~~~ 264 (443)
..++.+++|++|++++|. +.+ .++..+..+++|++|++++| .+.+. ++..+..++ +|++|++++|. +. +.++
T Consensus 136 ~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 136 NTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp HHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred HHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 345556666667766663 332 24555566666666666666 44432 445556666 66666666663 32 2334
Q ss_pred CCCCCCCCCceEEecCCC-Cc-ccChhccCCCCCCEEEccCCC-CC-CCChhhhCCCCCCeeeCCCCCCCccCcccccCC
Q 046017 265 NELGNLKCLAALIVKGTA-IR-EVPESLGYLSSLAKLELSNNN-LK-RTPESLYQLSSLKYLKPFENNSDRIPEYLRSSP 340 (443)
Q Consensus 265 ~~l~~l~~L~~L~l~~n~-l~-~lp~~~~~l~~L~~L~ls~n~-l~-~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~ 340 (443)
..+..+++|++|++++|. ++ ..+..+..+++|++|++++|. +. .....+..+++|++|++++| ++......
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~----i~~~~~~~- 290 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI----VPDGTLQL- 290 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS----SCTTCHHH-
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc----cCHHHHHH-
Confidence 445556666666666665 44 444556666666666666664 21 01123556666666666666 22211110
Q ss_pred CCCcccccccccccCCCCcc
Q 046017 341 TSIPSELRSLNLSVDSGNSL 360 (443)
Q Consensus 341 ~~lp~~L~~L~l~~N~l~~l 360 (443)
+..+++.|++++|.++..
T Consensus 291 --l~~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 291 --LKEALPHLQINCSHFTTI 308 (336)
T ss_dssp --HHHHSTTSEESCCCSCCT
T ss_pred --HHhhCcceEEecccCccc
Confidence 223456666666655443
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.3e-22 Score=208.78 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=83.0
Q ss_pred cCCCcceEEecCCCCCCcC---C------------ccccCCCCCcEEeccccccccccccccC-CCCcccEEEeecC-ch
Q 046017 17 ERPCSCGLRLKNCSSLESF---P------------SSLCVLKSLRSLQIIDCKKFERLLDELG-NLETLLVLRVEGA-AI 79 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~---p------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~l~~n-~l 79 (443)
.+++|++|++++|.....+ | .....+++|++|++++|.+.+..+..+. .+++|++|+++++ .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 5777777777776533322 1 1123567777777777776655555554 5677777777776 44
Q ss_pred hh--hhhhhccCCCCcEEecCCCC--------------CCCCccEEEEeCCC--Cc--ccCccccCCCCCCEEeccCCCC
Q 046017 80 RE--LSQSLGQLALLSELELKNSS--------------EFEYLRVLRVEGAA--IR--ELPESIGKSTLLSELELKNCSE 139 (443)
Q Consensus 80 ~~--lp~~~~~l~~L~~L~ls~~~--------------~l~~L~~L~l~~n~--~~--~lp~~l~~l~~L~~L~l~~n~~ 139 (443)
+. ++..+.++++|++|++++|. .+++|++|++++|. ++ .++..+..+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 42 55555567777777777663 44577777777765 11 1222223467777777777632
Q ss_pred C--------CCCCcCEEEccCC
Q 046017 140 L--------KLKSLRRIKMSKC 153 (443)
Q Consensus 140 ~--------~l~~L~~L~l~~~ 153 (443)
. .+++|++|+++.+
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHHHHhcCCcceEcccccc
Confidence 2 5566777765443
No 93
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=4.2e-22 Score=192.36 Aligned_cols=251 Identities=10% Similarity=0.040 Sum_probs=176.9
Q ss_pred EEeccccccccccccccCCCCcccEEEeecCchhhhh-----hhhccCC-CCcEEecCCCCCCCCccEEEEeCCCCccc-
Q 046017 47 SLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-----QSLGQLA-LLSELELKNSSEFEYLRVLRVEGAAIREL- 119 (443)
Q Consensus 47 ~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-----~~~~~l~-~L~~L~ls~~~~l~~L~~L~l~~n~~~~l- 119 (443)
+++++.|.+.+.+|..+...++|++|++++|.++..+ ..+..++ +|++|++++ |.++..
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~--------------N~l~~~~ 67 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG--------------NSLGFKN 67 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCS--------------SCGGGSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcC--------------CCCCHHH
Confidence 4678888888888887777778999999999998655 4566655 555555544 666554
Q ss_pred CccccCC-----CCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCc
Q 046017 120 PESIGKS-----TLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSS 194 (443)
Q Consensus 120 p~~l~~l-----~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~ 194 (443)
+..+..+ ++|++|++++|. ++..+ ...+...
T Consensus 68 ~~~l~~~l~~~~~~L~~L~Ls~n~-----------------l~~~~---------------------------~~~l~~~ 103 (362)
T 3goz_A 68 SDELVQILAAIPANVTSLNLSGNF-----------------LSYKS---------------------------SDELVKT 103 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSC-----------------GGGSC---------------------------HHHHHHH
T ss_pred HHHHHHHHhccCCCccEEECcCCc-----------------CChHH---------------------------HHHHHHH
Confidence 3333332 777777777761 11110 0111122
Q ss_pred ccCC-cccceeeccccccccccccc----ccC-CCCcceeeccCccCCCCC----CchhhcCC-CCCcEecccccccccC
Q 046017 195 LCML-KSLRFLETIACKKLERLPES----LGQ-LALLCELKMIKCSSFESL----PSSLCMLK-SLTPLAIIDCKIFKRL 263 (443)
Q Consensus 195 ~~~l-~~L~~L~ls~n~~~~~~p~~----l~~-l~~L~~L~ls~n~~~~~~----p~~~~~l~-~L~~L~l~~n~~~~~~ 263 (443)
+..+ ++|++|++++|.+.+..+.. +.. .++|++|++++|.+.... +..+..++ +|++|++++|.+.+..
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 4444 79999999999887655443 334 369999999999887533 34455565 9999999999997655
Q ss_pred CCC----CCCC-CCCceEEecCCCCcc-----cChhccC-CCCCCEEEccCCCCCCCC-----hhhhCCCCCCeeeCCCC
Q 046017 264 PNE----LGNL-KCLAALIVKGTAIRE-----VPESLGY-LSSLAKLELSNNNLKRTP-----ESLYQLSSLKYLKPFEN 327 (443)
Q Consensus 264 ~~~----l~~l-~~L~~L~l~~n~l~~-----lp~~~~~-l~~L~~L~ls~n~l~~lp-----~~l~~l~~L~~L~ls~n 327 (443)
+.. +..+ ++|++|++++|.++. ++..+.. .++|++|++++|.++..+ ..+..+++|++|++++|
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 433 3344 599999999999986 6766766 459999999999999764 34577899999999999
Q ss_pred CCCccCcc--------cccCCCCCcccccccccccCCCCcc
Q 046017 328 NSDRIPEY--------LRSSPTSIPSELRSLNLSVDSGNSL 360 (443)
Q Consensus 328 ~l~~lp~~--------~~~~~~~lp~~L~~L~l~~N~l~~l 360 (443)
.+..++.. +... ++|++||+++|.+...
T Consensus 264 ~l~~i~~~~~~~l~~~~~~l-----~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 264 IVKNMSKEQCKALGAAFPNI-----QKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHTTCCHHHHHHHHTTSTTC-----CEEEEECTTSCBCCGG
T ss_pred CccccCHHHHHHHHHHhccC-----CceEEEecCCCcCCCc
Confidence 96555432 2222 6899999999987654
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1e-19 Score=174.68 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=112.8
Q ss_pred CcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCc-hhhcC-CCCCcEecccccccccCCCCCCCC
Q 046017 193 SSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPS-SLCML-KSLTPLAIIDCKIFKRLPNELGNL 270 (443)
Q Consensus 193 ~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~-~~~~l-~~L~~L~l~~n~~~~~~~~~l~~l 270 (443)
..+..+++|++|++++|.+....+..+....++..|++.++.....++. .+..+ ..++.|++++|++. .++......
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~ 176 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNG 176 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTT
T ss_pred hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccc
Confidence 4577888999999998877666555666677788888877655555543 44444 36888999998884 466655567
Q ss_pred CCCceEEecC-CCCcccCh-hccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCC-CCCCccCcccccCCCCCcccc
Q 046017 271 KCLAALIVKG-TAIREVPE-SLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFE-NNSDRIPEYLRSSPTSIPSEL 347 (443)
Q Consensus 271 ~~L~~L~l~~-n~l~~lp~-~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~-n~l~~lp~~~~~~~~~lp~~L 347 (443)
++|++|++.+ |.++.+|. .+..+++|++|++++|+|+.+|. ..+.+|+.|.+.+ +.++.+|. +..+ ++|
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~-l~~l-----~~L 248 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKLPT-LEKL-----VAL 248 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCCCC-TTTC-----CSC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcCCC-chhC-----cCh
Confidence 7889999875 68888875 46788999999999999998886 3466777777766 66788885 3333 578
Q ss_pred cccccccC
Q 046017 348 RSLNLSVD 355 (443)
Q Consensus 348 ~~L~l~~N 355 (443)
+.+++.++
T Consensus 249 ~~l~l~~~ 256 (350)
T 4ay9_X 249 MEASLTYP 256 (350)
T ss_dssp CEEECSCH
T ss_pred hhCcCCCC
Confidence 88888753
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.82 E-value=1.5e-21 Score=200.94 Aligned_cols=321 Identities=16% Similarity=0.147 Sum_probs=205.1
Q ss_pred cCCCcceEEecCCCCCCcCCcccc-CCCCCcEEeccccccccc--cccccCCCCcccEEEeecCchhh-----hhhhhcc
Q 046017 17 ERPCSCGLRLKNCSSLESFPSSLC-VLKSLRSLQIIDCKKFER--LLDELGNLETLLVLRVEGAAIRE-----LSQSLGQ 88 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~l~~n~l~~-----lp~~~~~ 88 (443)
.+++|++|++++|.+....+..+. .+++|++|++++|...+. ++..+..+++|++|++++|.++. ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 578999999999986555555554 689999999999854432 55555688999999999988652 3444446
Q ss_pred CCCCcEEecCCCC-------------CCCCccEEEEeCCC-CcccCccccCCCCCCEEeccCCCC---------------
Q 046017 89 LALLSELELKNSS-------------EFEYLRVLRVEGAA-IRELPESIGKSTLLSELELKNCSE--------------- 139 (443)
Q Consensus 89 l~~L~~L~ls~~~-------------~l~~L~~L~l~~n~-~~~lp~~l~~l~~L~~L~l~~n~~--------------- 139 (443)
+++|++|++++|. .+++|++|++++|. ++.+|..+..+++|++|++..+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7899999998874 34899999999884 666777677778888887654421
Q ss_pred ------------------C-----CCCCcCEEEccCCCCCCC--CC----CCCCCccccccC-cccccccccccCCCCCc
Q 046017 140 ------------------L-----KLKSLRRIKMSKCSNLKR--FP----KIASCNKVGITG-IKRLSSTLRLKNCSSLE 189 (443)
Q Consensus 140 ------------------~-----~l~~L~~L~l~~~~~l~~--~~----~~~~l~~L~l~~-l~~l~~~l~~~~~~~l~ 189 (443)
+ .+++|++|++++|. +.. +. ...+++.|++.+ +. -.
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~-------------~~ 328 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIE-------------DA 328 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGH-------------HH
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccC-------------HH
Confidence 0 35677777777765 331 11 113444444411 11 01
Q ss_pred ccCCcccCCcccceeecccc---------cccccccccc-cCCCCcceeeccCccCCCCCCchhh-cCCCCCcEecc--c
Q 046017 190 SLPSSLCMLKSLRFLETIAC---------KKLERLPESL-GQLALLCELKMIKCSSFESLPSSLC-MLKSLTPLAII--D 256 (443)
Q Consensus 190 ~lp~~~~~l~~L~~L~ls~n---------~~~~~~p~~l-~~l~~L~~L~ls~n~~~~~~p~~~~-~l~~L~~L~l~--~ 256 (443)
.++.....+++|++|+++++ .+.......+ ..+++|++|.++.+.+....+..+. .+++|+.|+++ +
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 11222234677888877332 2222111122 2367888887776666554444443 57889999988 2
Q ss_pred ---ccccccCC------CCCCCCCCCceEEecCCCCc-ccChhccC-CCCCCEEEccCCCCCC--CChhhhCCCCCCeee
Q 046017 257 ---CKIFKRLP------NELGNLKCLAALIVKGTAIR-EVPESLGY-LSSLAKLELSNNNLKR--TPESLYQLSSLKYLK 323 (443)
Q Consensus 257 ---n~~~~~~~------~~l~~l~~L~~L~l~~n~l~-~lp~~~~~-l~~L~~L~ls~n~l~~--lp~~l~~l~~L~~L~ 323 (443)
|...+..| ..+..+++|++|++++ .++ ..+..+.. +++|+.|++++|.++. ++.....+++|++|+
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 22223222 1245678899999977 555 22333433 7889999999999873 223236789999999
Q ss_pred CCCCCCCccC--cccccCCCCCcccccccccccCCC
Q 046017 324 PFENNSDRIP--EYLRSSPTSIPSELRSLNLSVDSG 357 (443)
Q Consensus 324 ls~n~l~~lp--~~~~~~~~~lp~~L~~L~l~~N~l 357 (443)
+++|.++... ..+..+ ++|++|++++|.+
T Consensus 488 L~~n~~~~~~~~~~~~~l-----~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKL-----ETMRSLWMSSCSV 518 (594)
T ss_dssp EESCSCCHHHHHHTGGGG-----GGSSEEEEESSCC
T ss_pred CcCCCCcHHHHHHHHHhC-----CCCCEEeeeCCCC
Confidence 9999885322 122222 6899999999876
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.5e-19 Score=182.98 Aligned_cols=115 Identities=23% Similarity=0.248 Sum_probs=64.0
Q ss_pred ccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEec
Q 046017 200 SLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVK 279 (443)
Q Consensus 200 ~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 279 (443)
+|++|++++|.+.+ +|. .+++|+.|++++|.+.+ +|. .+++|++|++++|.+.+ +|. +. ++|+.|+++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 56666666655544 444 45566666666655443 443 34566666666665543 444 33 556666666
Q ss_pred CCCCcccChhccCCCCC-------CEEEccCCCCCCCChhhhCCCCCCeeeCCCCCC
Q 046017 280 GTAIREVPESLGYLSSL-------AKLELSNNNLKRTPESLYQLSSLKYLKPFENNS 329 (443)
Q Consensus 280 ~n~l~~lp~~~~~l~~L-------~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l 329 (443)
+|+|+.+|. +.. +| +.|++++|+|+.+|..+..+++|+.|++++|.+
T Consensus 189 ~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 189 TNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp SSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred CCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 666665555 332 44 666666666666665555566666666666665
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=7.4e-19 Score=168.73 Aligned_cols=222 Identities=18% Similarity=0.126 Sum_probs=170.2
Q ss_pred cEEEeecCchhhhhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCc-cccCCCCCCEEeccCCCCCCCCCcCEE
Q 046017 70 LVLRVEGAAIRELSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPE-SIGKSTLLSELELKNCSELKLKSLRRI 148 (443)
Q Consensus 70 ~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~-~l~~l~~L~~L~l~~n~~~~l~~L~~L 148 (443)
++++.++++++++|..+. +++++|++++|+++.+|. .|.++++|++|++++|
T Consensus 12 ~~v~C~~~~Lt~iP~~l~----------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N----------- 64 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP----------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN----------- 64 (350)
T ss_dssp TEEEEESTTCCSCCTTCC----------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-----------
T ss_pred CEEEecCCCCCccCcCcC----------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-----------
Confidence 789999999999997652 356777777889999986 4788999999988887
Q ss_pred EccCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccce-eecccccccccccccccCCCCcce
Q 046017 149 KMSKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRF-LETIACKKLERLPESLGQLALLCE 227 (443)
Q Consensus 149 ~l~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~-L~ls~n~~~~~~p~~l~~l~~L~~ 227 (443)
...+.+|. ..|.+++++++ +.+.+|++....|..+..+++|++
T Consensus 65 -----~i~~~i~~-------------------------------~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 65 -----DVLEVIEA-------------------------------DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp -----TTCCEECT-------------------------------TSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred -----CCCCccCh-------------------------------hHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 22222221 24667777776 455556666666788999999999
Q ss_pred eeccCccCCCCCCchhhcCCCCCcEecccccccccCCC-CCCCCC-CCceEEecCCCCcccChhccCCCCCCEEEccC-C
Q 046017 228 LKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN-ELGNLK-CLAALIVKGTAIREVPESLGYLSSLAKLELSN-N 304 (443)
Q Consensus 228 L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~-~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~-n 304 (443)
|++++|.+....+..+....++..+++.++.....++. .+..+. .+++|++++|+|+.+|.......+|++|++++ |
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCT
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCC
Confidence 99999988776666666777888899977544455543 455554 68999999999999998888888999999985 8
Q ss_pred CCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccC-CCCccc
Q 046017 305 NLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVD-SGNSLN 361 (443)
Q Consensus 305 ~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N-~l~~l~ 361 (443)
.++.+|. .+..+++|++|++++|+|+.+|.... .+|+.|.+.++ .++.+|
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~-------~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGL-------ENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC-------TTCCEEECTTCTTCCCCC
T ss_pred cccCCCHHHhccCcccchhhcCCCCcCccChhhh-------ccchHhhhccCCCcCcCC
Confidence 8999985 67999999999999999999998532 46666665554 567776
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=4.7e-19 Score=179.41 Aligned_cols=139 Identities=25% Similarity=0.275 Sum_probs=91.5
Q ss_pred CcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEE
Q 046017 198 LKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALI 277 (443)
Q Consensus 198 l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 277 (443)
+++|++|++++|.+.+ +|. +.. +|++|++++|.+.+ +|. .+++|++|++++|.+.+ +|. .+++|++|+
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 166 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLS 166 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEE
Confidence 4567777777765554 555 443 77777777766655 554 46777777777777644 554 456777777
Q ss_pred ecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCC-------CeeeCCCCCCCccCcccccCCCCCccccccc
Q 046017 278 VKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSL-------KYLKPFENNSDRIPEYLRSSPTSIPSELRSL 350 (443)
Q Consensus 278 l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L-------~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L 350 (443)
+++|.++.+|. +. ++|+.|++++|+|+.+|. +.. +| ++|++++|+|+.+|..++.+ ++|+.|
T Consensus 167 Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l-----~~L~~L 235 (571)
T 3cvr_A 167 VRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSL-----DPTCTI 235 (571)
T ss_dssp CCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGS-----CTTEEE
T ss_pred CCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcC-----CCCCEE
Confidence 77777777766 44 677777777777777766 443 55 77777777777777766654 567777
Q ss_pred ccccCCCCc
Q 046017 351 NLSVDSGNS 359 (443)
Q Consensus 351 ~l~~N~l~~ 359 (443)
++++|.++.
T Consensus 236 ~L~~N~l~~ 244 (571)
T 3cvr_A 236 ILEDNPLSS 244 (571)
T ss_dssp ECCSSSCCH
T ss_pred EeeCCcCCC
Confidence 777776654
No 99
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.79 E-value=1.3e-22 Score=206.36 Aligned_cols=109 Identities=24% Similarity=0.246 Sum_probs=82.6
Q ss_pred CcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccC
Q 046017 224 LLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSN 303 (443)
Q Consensus 224 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~ 303 (443)
.|+.|++++|.+.+ +|. +..+++|+.|++++|.+. .+|..++.+++|++|++++|.|+.+| .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 47778888776654 565 777788888888887775 67777777888888888888887777 677788888888888
Q ss_pred CCCCCC--ChhhhCCCCCCeeeCCCCCCCccCccc
Q 046017 304 NNLKRT--PESLYQLSSLKYLKPFENNSDRIPEYL 336 (443)
Q Consensus 304 n~l~~l--p~~l~~l~~L~~L~ls~n~l~~lp~~~ 336 (443)
|+++++ |..+..+++|+.|++++|+++.+|+..
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 888876 777778888888888888877766543
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.1e-18 Score=162.96 Aligned_cols=132 Identities=27% Similarity=0.284 Sum_probs=91.1
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+ + +.+..+++|++|++++|.+.+. ..+..+++|+
T Consensus 86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence 4455666666666655443 32 36667777777777766544 2 3566777777777777776443 4566777788
Q ss_pred eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCc
Q 046017 275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPE 334 (443)
Q Consensus 275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~ 334 (443)
+|++++|.++.++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|++...|.
T Consensus 160 ~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 160 TLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp EEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred EEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCcc
Confidence 88888887777665 7777888888888888887764 7778888888888887766554
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.6e-18 Score=161.96 Aligned_cols=154 Identities=24% Similarity=0.218 Sum_probs=133.9
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+ + ..+..+++|+
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~ 137 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE 137 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCC
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCC
Confidence 6788999999999988776543 8899999999999988765 44 58899999999999999865 3 4688899999
Q ss_pred eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccccc
Q 046017 275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSV 354 (443)
Q Consensus 275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~ 354 (443)
+|++++|+++.+ ..+..+++|+.|++++|+++.++. +..+++|++|++++|+++.+|. +..+ ++|+.|++++
T Consensus 138 ~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l-----~~L~~L~l~~ 209 (291)
T 1h6t_A 138 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGL-----KNLDVLELFS 209 (291)
T ss_dssp EEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTC-----TTCSEEEEEE
T ss_pred EEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccC-----CCCCEEECcC
Confidence 999999999988 568899999999999999999887 9999999999999999999876 5554 7999999999
Q ss_pred CCCCcccC
Q 046017 355 DSGNSLNL 362 (443)
Q Consensus 355 N~l~~l~~ 362 (443)
|.+...|.
T Consensus 210 n~i~~~~~ 217 (291)
T 1h6t_A 210 QECLNKPI 217 (291)
T ss_dssp EEEECCCE
T ss_pred CcccCCcc
Confidence 98766544
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=3.5e-18 Score=151.41 Aligned_cols=177 Identities=19% Similarity=0.124 Sum_probs=116.7
Q ss_pred CCCCCCccCCCCCc----------cCCCcceEEecCCCCCCcCCccccCCCCCcEEeccccccccccccccCCCCcccEE
Q 046017 3 PKIPSCNIDGSTGI----------ERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVL 72 (443)
Q Consensus 3 ~~~~~c~~~g~~~~----------~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 72 (443)
|....|.|.++.+. ..+++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 2 p~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (208)
T 2o6s_A 2 PSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL 81 (208)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEE
Confidence 56667888876653 23467777777777554444456777777777777777655444456777777777
Q ss_pred EeecCchhhhhh-hhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCcc-ccCCCCCCEEeccCCCCCCCCCcCEEEc
Q 046017 73 RVEGAAIRELSQ-SLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPES-IGKSTLLSELELKNCSELKLKSLRRIKM 150 (443)
Q Consensus 73 ~l~~n~l~~lp~-~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~-l~~l~~L~~L~l~~n~~~~l~~L~~L~l 150 (443)
++++|.++.+|. .+..+++|++|+ +++|.++.+|.. +..+++|++|++++|
T Consensus 82 ~Ls~n~l~~~~~~~~~~l~~L~~L~--------------L~~N~l~~~~~~~~~~l~~L~~L~l~~N------------- 134 (208)
T 2o6s_A 82 NLSTNQLQSLPNGVFDKLTQLKELA--------------LNTNQLQSLPDGVFDKLTQLKDLRLYQN------------- 134 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEE--------------CCSSCCCCCCTTTTTTCTTCCEEECCSS-------------
T ss_pred ECCCCcCCccCHhHhcCccCCCEEE--------------cCCCcCcccCHhHhccCCcCCEEECCCC-------------
Confidence 777777776653 345554444444 444666666654 566777777777775
Q ss_pred cCCCCCCCCCCCCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeec
Q 046017 151 SKCSNLKRFPKIASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKM 230 (443)
Q Consensus 151 ~~~~~l~~~~~~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~l 230 (443)
.++.++ +..+..+++|++|++++|.+.+ .++.|++|++
T Consensus 135 ----~l~~~~-------------------------------~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~ 172 (208)
T 2o6s_A 135 ----QLKSVP-------------------------------DGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSE 172 (208)
T ss_dssp ----CCSCCC-------------------------------TTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHH
T ss_pred ----ccceeC-------------------------------HHHhccCCCccEEEecCCCeec-------CCCCHHHHHH
Confidence 222222 1235677888899998875543 4567888888
Q ss_pred cCccCCCCCCchhhcCCC
Q 046017 231 IKCSSFESLPSSLCMLKS 248 (443)
Q Consensus 231 s~n~~~~~~p~~~~~l~~ 248 (443)
+.|.+.+.+|..++.++.
T Consensus 173 ~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 173 WINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHCTTTBBCTTSSBCT
T ss_pred HHHhCCceeeccCccccC
Confidence 888888888888776654
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.8e-18 Score=150.73 Aligned_cols=154 Identities=16% Similarity=0.147 Sum_probs=131.5
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
.+.+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 367889999999997766 566 6889999999999998443 335788999999999999999887888899999999
Q ss_pred eEEecCCCCcc-cChhccCCCCCCEEEccCCC-CCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccc
Q 046017 275 ALIVKGTAIRE-VPESLGYLSSLAKLELSNNN-LKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNL 352 (443)
Q Consensus 275 ~L~l~~n~l~~-lp~~~~~l~~L~~L~ls~n~-l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l 352 (443)
+|++++|+++. .+..+..+++|++|++++|+ ++.+| .+..+++|++|++++|+++.++ .+..+ ++|++|++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l-----~~L~~L~l 188 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDF-----PKLNQLYA 188 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGC-----SSCCEEEE
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccC-----CCCCEEEe
Confidence 99999999994 67789999999999999998 88887 6899999999999999999887 45554 68999999
Q ss_pred ccCCCCc
Q 046017 353 SVDSGNS 359 (443)
Q Consensus 353 ~~N~l~~ 359 (443)
++|.++.
T Consensus 189 ~~N~i~~ 195 (197)
T 4ezg_A 189 FSQTIGG 195 (197)
T ss_dssp CBC----
T ss_pred eCcccCC
Confidence 9998653
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=7.2e-18 Score=149.40 Aligned_cols=166 Identities=19% Similarity=0.212 Sum_probs=120.7
Q ss_pred CcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCC
Q 046017 188 LESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNEL 267 (443)
Q Consensus 188 l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l 267 (443)
+..+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 34455433 3578888888887776555667788888888888887776555567788888888888888865555557
Q ss_pred CCCCCCceEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcccccCCCCCcc
Q 046017 268 GNLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPS 345 (443)
Q Consensus 268 ~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~ 345 (443)
..+++|++|++++|+++.++.. +..+++|++|++++|+++.+|. .+..+++|++|++++|.+..- .+
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-----------~~ 165 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-----------CP 165 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-----------TT
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-----------CC
Confidence 7888888888888888877654 5778888888888888887765 367788888888888866421 14
Q ss_pred cccccccccCCCC-cccCChhh
Q 046017 346 ELRSLNLSVDSGN-SLNLDLNK 366 (443)
Q Consensus 346 ~L~~L~l~~N~l~-~l~~~~~~ 366 (443)
+|+.|+++.|.++ .+|..+..
T Consensus 166 ~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 166 GIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp TTHHHHHHHHHCTTTBBCTTSS
T ss_pred CHHHHHHHHHhCCceeeccCcc
Confidence 6778888777544 55655543
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=2.5e-18 Score=151.08 Aligned_cols=134 Identities=15% Similarity=0.159 Sum_probs=117.3
Q ss_pred cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017 194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL 273 (443)
Q Consensus 194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 273 (443)
.+..+++|++|++++|.. .. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 61 ~l~~l~~L~~L~l~~n~~-~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 138 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHA-TN-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138 (197)
T ss_dssp TGGGCTTCSEEEEESCCC-SC-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred HHhcCCCCCEEEccCCCC-Cc-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence 477889999999999844 33 3478899999999999999888788889999999999999999988778889999999
Q ss_pred ceEEecCCC-CcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCc
Q 046017 274 AALIVKGTA-IREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDR 331 (443)
Q Consensus 274 ~~L~l~~n~-l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~ 331 (443)
++|++++|. ++.+| .+..+++|+.|++++|+++.++ .+..+++|++|++++|+++.
T Consensus 139 ~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 139 NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 999999997 88887 5889999999999999999988 68999999999999999864
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=8.6e-18 Score=161.95 Aligned_cols=165 Identities=21% Similarity=0.200 Sum_probs=134.7
Q ss_pred CcccCCcccCCcccceeeccccccccccccccc-CCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCC
Q 046017 188 LESLPSSLCMLKSLRFLETIACKKLERLPESLG-QLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNE 266 (443)
Q Consensus 188 l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~-~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 266 (443)
+..+|..+. +.++.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..|..+++|++|++++|++.+..+..
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 107 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL 107 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHH
Confidence 344555443 3689999999888877777777 8999999999999888777778999999999999999997766667
Q ss_pred CCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCChhh----hCCCCCCeeeCCCCCCCccCcc-cccCC
Q 046017 267 LGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPESL----YQLSSLKYLKPFENNSDRIPEY-LRSSP 340 (443)
Q Consensus 267 l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~~l----~~l~~L~~L~ls~n~l~~lp~~-~~~~~ 340 (443)
+..+++|++|++++|+|+.+ |..+..+++|+.|+|++|+++.+|..+ ..+++|+.|+|++|+|+.+|.. +..
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-- 185 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK-- 185 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHH--
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhh--
Confidence 89999999999999999976 567889999999999999999998654 5799999999999999998853 333
Q ss_pred CCCcc-cccccccccCCCC
Q 046017 341 TSIPS-ELRSLNLSVDSGN 358 (443)
Q Consensus 341 ~~lp~-~L~~L~l~~N~l~ 358 (443)
+|. .++.|++++|.+.
T Consensus 186 --l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 186 --LPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp --SCHHHHTTEECCSSCEE
T ss_pred --ccHhhcceEEecCCCcc
Confidence 222 2588999999765
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.3e-17 Score=148.48 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=114.6
Q ss_pred cceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecC
Q 046017 201 LRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG 280 (443)
Q Consensus 201 L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 280 (443)
.+.++.+++ ....+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..+..+++|++|++++
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 445666653 3445665443 7788888888887777777788888888888888887544445567888888888888
Q ss_pred CCCcccChh-ccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcc-cccCCCCCcccccccccccCCCC
Q 046017 281 TAIREVPES-LGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEY-LRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 281 n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~-~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
|+++.++.. +..+++|++|++++|+++.+|..+..+++|++|++++|+++.+|.. +..+ ++|++|++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL-----SSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC-----TTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCC-----CCCCEEEeeCCCcc
Confidence 888877654 5778888888888888888888888888888888888888888754 3333 68888888888765
Q ss_pred cc
Q 046017 359 SL 360 (443)
Q Consensus 359 ~l 360 (443)
.-
T Consensus 173 c~ 174 (229)
T 3e6j_A 173 CE 174 (229)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=4.5e-17 Score=146.50 Aligned_cols=144 Identities=22% Similarity=0.185 Sum_probs=127.6
Q ss_pred CCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCC
Q 046017 186 SSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN 265 (443)
Q Consensus 186 ~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 265 (443)
..++.+|..+. ++|++|++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++|++.+..+.
T Consensus 29 ~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 29 KRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 45667787654 7999999999999988888999999999999999988665556678999999999999999766666
Q ss_pred CCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCc
Q 046017 266 ELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDR 331 (443)
Q Consensus 266 ~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~ 331 (443)
.+..+++|++|++++|+++.+|..+..+++|+.|++++|+++.+| ..+..+++|+.|++++|.+.-
T Consensus 107 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred HhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 688999999999999999999999999999999999999999887 468899999999999998853
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.6e-17 Score=169.84 Aligned_cols=128 Identities=27% Similarity=0.270 Sum_probs=58.9
Q ss_pred CCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceE
Q 046017 197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL 276 (443)
Q Consensus 197 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 276 (443)
.+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+.+. ..+..+++|+.|
T Consensus 85 ~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 158 (605)
T 1m9s_A 85 NLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL 158 (605)
T ss_dssp GCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEE
T ss_pred cCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEE
Confidence 33444444444433322 11 34444444444444444332 1 2344445555555555544332 334445555555
Q ss_pred EecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCcc
Q 046017 277 IVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRI 332 (443)
Q Consensus 277 ~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~l 332 (443)
+|++|.++.+++ +..+++|+.|+|++|+++.+| .+..+++|+.|+|++|++...
T Consensus 159 ~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 159 SLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred ECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence 555555554433 445555555555555555543 245555555555555555433
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2.8e-17 Score=158.34 Aligned_cols=134 Identities=22% Similarity=0.163 Sum_probs=107.0
Q ss_pred CCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceE
Q 046017 197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL 276 (443)
Q Consensus 197 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 276 (443)
.+++|++|++++|.+.+..+..|..+++|++|+|++|.+....+..|..+++|++|++++|++.+..+..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 66777888887777766666677888888888888887766666677888888888888888877777788888899999
Q ss_pred EecCCCCcccChhc----cCCCCCCEEEccCCCCCCCC-hhhhCCCC--CCeeeCCCCCCC
Q 046017 277 IVKGTAIREVPESL----GYLSSLAKLELSNNNLKRTP-ESLYQLSS--LKYLKPFENNSD 330 (443)
Q Consensus 277 ~l~~n~l~~lp~~~----~~l~~L~~L~ls~n~l~~lp-~~l~~l~~--L~~L~ls~n~l~ 330 (443)
++++|+|+.+|..+ ..+++|+.|+|++|+|+.+| ..+..++. ++.|++++|.+.
T Consensus 142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99999988888765 56889999999999999887 46777776 488999998874
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=3.8e-17 Score=167.18 Aligned_cols=155 Identities=24% Similarity=0.216 Sum_probs=134.5
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+.+ +| .+..+++|+.|++++|.+.+ + ..+..+++|+
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 134 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLE 134 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCS
T ss_pred HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccC
Confidence 7788999999999988776544 8899999999999998765 44 68899999999999999865 3 4588999999
Q ss_pred eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccccc
Q 046017 275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSV 354 (443)
Q Consensus 275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~ 354 (443)
.|+|++|.++.+ ..+..+++|+.|+|++|++..++. +..+++|+.|+|++|+|+.+|. +..+ ++|+.|++++
T Consensus 135 ~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~-l~~l-----~~L~~L~L~~ 206 (605)
T 1m9s_A 135 SLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGL-----KNLDVLELFS 206 (605)
T ss_dssp EEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTC-----TTCSEEECCS
T ss_pred EEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH-HccC-----CCCCEEEccC
Confidence 999999999988 568999999999999999998877 9999999999999999998864 5554 7999999999
Q ss_pred CCCCcccCC
Q 046017 355 DSGNSLNLD 363 (443)
Q Consensus 355 N~l~~l~~~ 363 (443)
|.+...|..
T Consensus 207 N~l~~~p~~ 215 (605)
T 1m9s_A 207 QECLNKPIN 215 (605)
T ss_dssp EEEECCCCC
T ss_pred CcCcCCccc
Confidence 977665543
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=7.7e-17 Score=144.05 Aligned_cols=150 Identities=19% Similarity=0.318 Sum_probs=110.3
Q ss_pred ceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCC
Q 046017 202 RFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT 281 (443)
Q Consensus 202 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 281 (443)
+.++.+++. ...+|..+. +.|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 455666543 334555443 57788888887776655667777888888888888887766777888888888888888
Q ss_pred CCcccChh-ccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccCcc-cccCCCCCcccccccccccCCCC
Q 046017 282 AIREVPES-LGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPEY-LRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 282 ~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp~~-~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
.|+.+|.. +..+++|++|++++|+++.++ ..+..+++|++|++++|+++.++.. +..+ ++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL-----RAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-----TTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCC-----CCCCEEEeCCCCcC
Confidence 88877755 467888888888888888764 5678888888888888888877764 3333 57888888888665
Q ss_pred c
Q 046017 359 S 359 (443)
Q Consensus 359 ~ 359 (443)
.
T Consensus 166 c 166 (220)
T 2v9t_B 166 C 166 (220)
T ss_dssp C
T ss_pred C
Confidence 4
No 113
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=7.4e-17 Score=144.17 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=125.3
Q ss_pred CCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCC
Q 046017 186 SSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPN 265 (443)
Q Consensus 186 ~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 265 (443)
..++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+.
T Consensus 21 ~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 21 KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence 34667777654 6899999999988877777899999999999999999888889999999999999999999755455
Q ss_pred CCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCC
Q 046017 266 ELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSD 330 (443)
Q Consensus 266 ~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~ 330 (443)
.+..+++|++|++++|+++.+ |..+..+++|+.|++++|+++.++. .+..+++|++|++++|.+.
T Consensus 99 ~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 678899999999999999977 5678899999999999999998874 5889999999999999884
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=1.9e-17 Score=141.47 Aligned_cols=133 Identities=23% Similarity=0.235 Sum_probs=77.1
Q ss_pred CCcceeeccCccCC-CCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcc-cChhccCCCCCCEEE
Q 046017 223 ALLCELKMIKCSSF-ESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE-VPESLGYLSSLAKLE 300 (443)
Q Consensus 223 ~~L~~L~ls~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~ 300 (443)
++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555544 34555555556666666666655432 445556666666666666664 555555566666666
Q ss_pred ccCCCCCCCC--hhhhCCCCCCeeeCCCCCCCccCc----ccccCCCCCcccccccccccCCCCcccC
Q 046017 301 LSNNNLKRTP--ESLYQLSSLKYLKPFENNSDRIPE----YLRSSPTSIPSELRSLNLSVDSGNSLNL 362 (443)
Q Consensus 301 ls~n~l~~lp--~~l~~l~~L~~L~ls~n~l~~lp~----~~~~~~~~lp~~L~~L~l~~N~l~~l~~ 362 (443)
+++|+++.+| ..+..+++|++|++++|.++.+|. .+..+ ++|++|++++|.+..+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-----PQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC-----SSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC-----ccCcEecCCCCChhhccc
Confidence 6666666654 456666666666666666665554 33332 466666666666655554
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=143.16 Aligned_cols=150 Identities=19% Similarity=0.230 Sum_probs=111.7
Q ss_pred ceeecccccccccccccccCCCCcceeeccCccCCCCCC-chhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecC
Q 046017 202 RFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLP-SSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG 280 (443)
Q Consensus 202 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 280 (443)
+.++++++.+. .+|..+. +.+++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777775543 4665543 456788888877766544 3477888888888888888766666788888888888888
Q ss_pred CCCcccCh-hccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCeeeCCCCCCCcc-CcccccCCCCCcccccccccccCCC
Q 046017 281 TAIREVPE-SLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKYLKPFENNSDRI-PEYLRSSPTSIPSELRSLNLSVDSG 357 (443)
Q Consensus 281 n~l~~lp~-~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~L~ls~n~l~~l-p~~~~~~~~~lp~~L~~L~l~~N~l 357 (443)
|.++.++. .+..+++|++|++++|+++.+ |..+..+++|++|++++|+++.+ |..+..+ ++|++|++++|.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L~~L~L~~N~l 165 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL-----HSLSTLNLLANPF 165 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTC-----TTCCEEECCSCCE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCC-----CCCCEEEecCcCC
Confidence 88887654 477888888888888888876 56788888888888888888777 4555444 6888888888866
Q ss_pred Cc
Q 046017 358 NS 359 (443)
Q Consensus 358 ~~ 359 (443)
..
T Consensus 166 ~c 167 (220)
T 2v70_A 166 NC 167 (220)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=8e-18 Score=154.72 Aligned_cols=131 Identities=21% Similarity=0.250 Sum_probs=75.2
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
+..+++|++|++++|.+.+.. . +..+++|++|++++|.+.+ +|... . ++|++|++++|++.+ ++ .+..+++|+
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~ 131 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLE 131 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCC
T ss_pred HhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcCccccc
Confidence 444555555555555444322 2 5555666666666655443 22221 2 566666666666543 22 355666666
Q ss_pred eEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCc
Q 046017 275 ALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPE 334 (443)
Q Consensus 275 ~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~ 334 (443)
+|++++|+++.++ .+..+++|+.|++++|+++.+ ..+..+++|+.|++++|.+...|.
T Consensus 132 ~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 132 ILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp EEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred EEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence 6666666666665 456666666666666666666 446666666666666666655554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=5.8e-17 Score=148.94 Aligned_cols=160 Identities=21% Similarity=0.191 Sum_probs=132.8
Q ss_pred CcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCC
Q 046017 188 LESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNEL 267 (443)
Q Consensus 188 l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l 267 (443)
+..++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|++.+ ++...
T Consensus 31 i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~ 104 (263)
T 1xeu_A 31 VTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP 104 (263)
T ss_dssp TTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC
T ss_pred ccccc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc
Confidence 34444 4678899999999998655 455 688899999999999887654 44 8899999999999999855 55433
Q ss_pred CCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccc
Q 046017 268 GNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSEL 347 (443)
Q Consensus 268 ~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L 347 (443)
. ++|++|++++|+++.++ .+..+++|+.|++++|+++.++ .+..+++|++|++++|+++.+ ..+..+ ++|
T Consensus 105 -~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l-----~~L 174 (263)
T 1xeu_A 105 -S-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRL-----KKV 174 (263)
T ss_dssp -C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTC-----CCC
T ss_pred -c-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccC-----CCC
Confidence 3 89999999999999886 4889999999999999999987 689999999999999999888 445444 689
Q ss_pred cccccccCCCCcccCC
Q 046017 348 RSLNLSVDSGNSLNLD 363 (443)
Q Consensus 348 ~~L~l~~N~l~~l~~~ 363 (443)
+.|++++|.++..|..
T Consensus 175 ~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 175 NWIDLTGQKCVNEPVK 190 (263)
T ss_dssp CEEEEEEEEEECCCEE
T ss_pred CEEeCCCCcccCCccc
Confidence 9999999987766543
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.70 E-value=6.1e-17 Score=138.29 Aligned_cols=137 Identities=23% Similarity=0.318 Sum_probs=123.8
Q ss_pred CCcccceeeccccccc-ccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCce
Q 046017 197 MLKSLRFLETIACKKL-ERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAA 275 (443)
Q Consensus 197 ~l~~L~~L~ls~n~~~-~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 275 (443)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4478999999999887 68888889999999999999987654 67889999999999999998777777777999999
Q ss_pred EEecCCCCcccC--hhccCCCCCCEEEccCCCCCCCCh----hhhCCCCCCeeeCCCCCCCccCcc
Q 046017 276 LIVKGTAIREVP--ESLGYLSSLAKLELSNNNLKRTPE----SLYQLSSLKYLKPFENNSDRIPEY 335 (443)
Q Consensus 276 L~l~~n~l~~lp--~~~~~l~~L~~L~ls~n~l~~lp~----~l~~l~~L~~L~ls~n~l~~lp~~ 335 (443)
|++++|.++.+| ..+..+++|+.|++++|.++.+|. .+..+++|++|++++|.+.++|..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999999876 688999999999999999999886 789999999999999999998874
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=141.02 Aligned_cols=129 Identities=16% Similarity=0.126 Sum_probs=74.2
Q ss_pred cceeeccccccccccc-ccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEec
Q 046017 201 LRFLETIACKKLERLP-ESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVK 279 (443)
Q Consensus 201 L~~L~ls~n~~~~~~p-~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 279 (443)
+++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 3455555544444322 234555555555655555554444455556666666666666544444445566666666666
Q ss_pred CCCCccc-ChhccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCeeeCCCCCC
Q 046017 280 GTAIREV-PESLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKYLKPFENNS 329 (443)
Q Consensus 280 ~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~L~ls~n~l 329 (443)
+|+++.+ |..+..+++|++|++++|+++.+ |..+..+++|++|++++|.+
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 6666644 44555666666666666666655 45566666666666666665
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=6e-19 Score=179.36 Aligned_cols=173 Identities=24% Similarity=0.158 Sum_probs=139.3
Q ss_pred CCcccCCcccCCcccceeeccccc-------------ccccccccccCCCCcceee-ccCccCCCCCCc------hhhc-
Q 046017 187 SLESLPSSLCMLKSLRFLETIACK-------------KLERLPESLGQLALLCELK-MIKCSSFESLPS------SLCM- 245 (443)
Q Consensus 187 ~l~~lp~~~~~l~~L~~L~ls~n~-------------~~~~~p~~l~~l~~L~~L~-ls~n~~~~~~p~------~~~~- 245 (443)
.++.+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+. .++. .+..
T Consensus 360 ~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-~L~~l~l~~n~i~~l 438 (567)
T 1dce_A 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-DLRSKFLLENSVLKM 438 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHHHHH
T ss_pred hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-hhhhhhhhccccccc
Confidence 345677778888889988886654 4556677778888888888 5544221 1111 1111
Q ss_pred -CCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCChhhhCCCCCCeeeC
Q 046017 246 -LKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPESLYQLSSLKYLKP 324 (443)
Q Consensus 246 -l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~l 324 (443)
...|+.|++++|.+.+ +|. ++.+++|+.|++++|.|+.+|..++.+++|+.|++++|+++++| .+..+++|++|++
T Consensus 439 ~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 439 EYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp HHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred CccCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 2369999999999865 776 99999999999999999999999999999999999999999998 7999999999999
Q ss_pred CCCCCCcc--CcccccCCCCCcccccccccccCCCCcccCChhhhh
Q 046017 325 FENNSDRI--PEYLRSSPTSIPSELRSLNLSVDSGNSLNLDLNKLS 368 (443)
Q Consensus 325 s~n~l~~l--p~~~~~~~~~lp~~L~~L~l~~N~l~~l~~~~~~l~ 368 (443)
++|+|+.+ |..+..+ ++|+.|++++|.++.+|.....+.
T Consensus 516 s~N~l~~~~~p~~l~~l-----~~L~~L~L~~N~l~~~~~~~~~l~ 556 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSC-----PRLVLLNLQGNSLCQEEGIQERLA 556 (567)
T ss_dssp CSSCCCSSSTTGGGGGC-----TTCCEEECTTSGGGGSSSCTTHHH
T ss_pred CCCCCCCCCCcHHHhcC-----CCCCEEEecCCcCCCCccHHHHHH
Confidence 99999888 8888876 799999999999988877654433
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=3.3e-17 Score=171.60 Aligned_cols=227 Identities=19% Similarity=0.137 Sum_probs=107.8
Q ss_pred CCccCCCCCccCCCcceEEecCCCCCCcCCccccCCCCCcEEeccc-----cccccccccccCCCCcccEEEeecCchhh
Q 046017 7 SCNIDGSTGIERPCSCGLRLKNCSSLESFPSSLCVLKSLRSLQIID-----CKKFERLLDELGNLETLLVLRVEGAAIRE 81 (443)
Q Consensus 7 ~c~~~g~~~~~~~~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~-----n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 81 (443)
...|.+... ..++++.|++.++.+ ...+..+.....|+.+.+.. |. ....+..+..++.|+.|+|++|.+..
T Consensus 162 ~~~~~~~~~-s~~~~~~l~L~~n~~-~~~~~~~l~~l~Ls~~~i~~~~~~~n~-~~~~~~~~~~l~~L~~L~Ls~n~l~~ 238 (727)
T 4b8c_D 162 SGTATNSAV-STPLTPKIELFANGK-DEANQALLQHKKLSQYSIDEDDDIENR-MVMPKDSKYDDQLWHALDLSNLQIFN 238 (727)
T ss_dssp ---------------------------------------------------------------CCCCCCEEECTTSCCSC
T ss_pred cccCCCcee-cCCccceEEeeCCCC-CcchhhHhhcCccCcccccCccccccc-eecChhhhccCCCCcEEECCCCCCCC
Confidence 345655443 346789999988874 33454443334444433332 22 22457778899999999999999999
Q ss_pred hhhhhccCCCCcEEecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCCCCCCcCEEEccCCCCCCCCCC
Q 046017 82 LSQSLGQLALLSELELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSELKLKSLRRIKMSKCSNLKRFPK 161 (443)
Q Consensus 82 lp~~~~~l~~L~~L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~~l~~L~~L~l~~~~~l~~~~~ 161 (443)
+|..+..+++|++|+|++ |.++.+|..+.++++|++|+|++|. +
T Consensus 239 l~~~~~~l~~L~~L~Ls~--------------N~l~~lp~~~~~l~~L~~L~Ls~N~-----------------l----- 282 (727)
T 4b8c_D 239 ISANIFKYDFLTRLYLNG--------------NSLTELPAEIKNLSNLRVLDLSHNR-----------------L----- 282 (727)
T ss_dssp CCGGGGGCCSCSCCBCTT--------------SCCSCCCGGGGGGTTCCEEECTTSC-----------------C-----
T ss_pred CChhhcCCCCCCEEEeeC--------------CcCcccChhhhCCCCCCEEeCcCCc-----------------C-----
Confidence 988777777666666665 6677889888888888888888861 1
Q ss_pred CCCCccccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCc
Q 046017 162 IASCNKVGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPS 241 (443)
Q Consensus 162 ~~~l~~L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~ 241 (443)
..+|..++.+++|++|+|++|.+ +.+|..|+.+++|++|+|++|.+.+.+|.
T Consensus 283 ---------------------------~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 283 ---------------------------TSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp ---------------------------SSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred ---------------------------CccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChH
Confidence 24556678888899999988765 47788888888999999999888888777
Q ss_pred hhhcCCC-CCcEecccccccccCCCCCCCCCCCceEEecCC--------CCc-ccChhccCCCCCCEEEccCCCC
Q 046017 242 SLCMLKS-LTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT--------AIR-EVPESLGYLSSLAKLELSNNNL 306 (443)
Q Consensus 242 ~~~~l~~-L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n--------~l~-~lp~~~~~l~~L~~L~ls~n~l 306 (443)
.+..+.. +..+++++|.+.+.+|. .|+.|+++.| .+. ..+..+..+..+....+++|-+
T Consensus 335 ~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 335 ILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------CC
T ss_pred HHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeecccc
Confidence 7655422 23467888888777665 3455566655 111 1122233444555556666655
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=1.5e-16 Score=132.94 Aligned_cols=124 Identities=21% Similarity=0.202 Sum_probs=68.4
Q ss_pred CCcceeeccCccCC-CCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcc-cChhccCCCCCCEEE
Q 046017 223 ALLCELKMIKCSSF-ESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIRE-VPESLGYLSSLAKLE 300 (443)
Q Consensus 223 ~~L~~L~ls~n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~ 300 (443)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555444 34454445555555555555555332 445555666666666666654 555555566666666
Q ss_pred ccCCCCCCCC--hhhhCCCCCCeeeCCCCCCCccCc----ccccCCCCCcccccccccc
Q 046017 301 LSNNNLKRTP--ESLYQLSSLKYLKPFENNSDRIPE----YLRSSPTSIPSELRSLNLS 353 (443)
Q Consensus 301 ls~n~l~~lp--~~l~~l~~L~~L~ls~n~l~~lp~----~~~~~~~~lp~~L~~L~l~ 353 (443)
+++|+++.+| ..+..+++|++|++++|+++.+|. .+..+ ++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-----~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL-----PQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC-----TTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC-----CCcccccCC
Confidence 6666666543 455666666666666666655554 23332 456666554
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=3e-16 Score=131.11 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=111.9
Q ss_pred CCcccceeeccccccc-ccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCce
Q 046017 197 MLKSLRFLETIACKKL-ERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAA 275 (443)
Q Consensus 197 ~l~~L~~L~ls~n~~~-~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 275 (443)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 4478999999999887 68888889999999999999887665 67888999999999999997767777777999999
Q ss_pred EEecCCCCcccC--hhccCCCCCCEEEccCCCCCCCCh----hhhCCCCCCeeeCCC
Q 046017 276 LIVKGTAIREVP--ESLGYLSSLAKLELSNNNLKRTPE----SLYQLSSLKYLKPFE 326 (443)
Q Consensus 276 L~l~~n~l~~lp--~~~~~l~~L~~L~ls~n~l~~lp~----~l~~l~~L~~L~ls~ 326 (443)
|++++|.++.++ ..+..+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999765 778999999999999999998875 688999999999864
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=7.7e-17 Score=168.83 Aligned_cols=125 Identities=22% Similarity=0.210 Sum_probs=61.3
Q ss_pred cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017 194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL 273 (443)
Q Consensus 194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 273 (443)
.+..+++|++|+|++|.+. .+|..++.+++|++|+|++|.+. .+|..+..+++|++|+|++|.+ +.+|..++.+++|
T Consensus 242 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L 318 (727)
T 4b8c_D 242 NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNL 318 (727)
T ss_dssp GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTC
T ss_pred hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCc
Confidence 3445556666666665544 55555566666666666665544 4555566666666666666655 3455556666666
Q ss_pred ceEEecCCCCc-ccChhccCCC-CCCEEEccCCCCCC-CChhhhCCCCCCeeeCCCC
Q 046017 274 AALIVKGTAIR-EVPESLGYLS-SLAKLELSNNNLKR-TPESLYQLSSLKYLKPFEN 327 (443)
Q Consensus 274 ~~L~l~~n~l~-~lp~~~~~l~-~L~~L~ls~n~l~~-lp~~l~~l~~L~~L~ls~n 327 (443)
++|+|++|.|+ .+|..+..+. .+..|++++|.++. +| ..|+.|+++.|
T Consensus 319 ~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 319 QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 66666666555 2333332211 11234555555552 23 24566666665
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=3e-15 Score=128.80 Aligned_cols=132 Identities=23% Similarity=0.241 Sum_probs=101.8
Q ss_pred ccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhc-cCCCCCC
Q 046017 219 LGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESL-GYLSSLA 297 (443)
Q Consensus 219 l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~-~~l~~L~ 297 (443)
+..+++|+.|++++|.+. .+|......++|++|++++|.+.+. ..+..+++|++|++++|.++.+|+.+ ..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 445677888888887665 3454333334888888888887653 56788888999999999888887554 7888999
Q ss_pred EEEccCCCCCCCCh--hhhCCCCCCeeeCCCCCCCccCcc----cccCCCCCcccccccccccCCCC
Q 046017 298 KLELSNNNLKRTPE--SLYQLSSLKYLKPFENNSDRIPEY----LRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 298 ~L~ls~n~l~~lp~--~l~~l~~L~~L~ls~n~l~~lp~~----~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
+|++++|+++.+|. .+..+++|++|++++|.++.+|.. +..+ ++|+.||+++|...
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l-----~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV-----PQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC-----TTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHC-----CccceeCCCcCCHH
Confidence 99999999988886 788889999999999999888875 5554 68899998887543
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=1.4e-14 Score=126.47 Aligned_cols=125 Identities=18% Similarity=0.174 Sum_probs=74.1
Q ss_pred ceeecccccccccccccccCCCCcceeeccCccCCCCCCc-hhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecC
Q 046017 202 RFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPS-SLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG 280 (443)
Q Consensus 202 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 280 (443)
++++++++.+ +.+|..+. ..+++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5566666444 44555443 2666666666655444332 356666666666666666655566666666666666666
Q ss_pred CCCcccCh-hccCCCCCCEEEccCCCCCCC-ChhhhCCCCCCeeeCCCCCC
Q 046017 281 TAIREVPE-SLGYLSSLAKLELSNNNLKRT-PESLYQLSSLKYLKPFENNS 329 (443)
Q Consensus 281 n~l~~lp~-~~~~l~~L~~L~ls~n~l~~l-p~~l~~l~~L~~L~ls~n~l 329 (443)
|+++.++. .+..+++|++|++++|+++.+ |..+..+++|++|++++|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 66665443 355566666666666666644 44555666666666666655
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=4.6e-15 Score=127.60 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=114.2
Q ss_pred ccCCcccceeecccccccccccccccCC-CCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCC
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQL-ALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCL 273 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l-~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 273 (443)
+..+++|++|++++|.+. .+|. +..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 567889999999998776 4554 4444 4999999999987764 578899999999999999965433445889999
Q ss_pred ceEEecCCCCcccCh--hccCCCCCCEEEccCCCCCCCChh----hhCCCCCCeeeCCCCCCCcc
Q 046017 274 AALIVKGTAIREVPE--SLGYLSSLAKLELSNNNLKRTPES----LYQLSSLKYLKPFENNSDRI 332 (443)
Q Consensus 274 ~~L~l~~n~l~~lp~--~~~~l~~L~~L~ls~n~l~~lp~~----l~~l~~L~~L~ls~n~l~~l 332 (443)
++|++++|.++.+|. .+..+++|+.|++++|.+..+|.. +..+++|++|++++|.+.+.
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 999999999999987 788999999999999999999875 89999999999999987543
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=8.9e-14 Score=121.35 Aligned_cols=104 Identities=26% Similarity=0.339 Sum_probs=48.3
Q ss_pred CCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCC
Q 046017 248 SLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPF 325 (443)
Q Consensus 248 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls 325 (443)
+|++|++++|.+. .+|..+..+++|++|++++|.|+.++ ..+..+++|++|++++|+++.++ ..+..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 3444444444442 33344444444444444444444333 23444455555555555555443 234555555555555
Q ss_pred CCCCCccCccc-ccCCCCCcccccccccccCCC
Q 046017 326 ENNSDRIPEYL-RSSPTSIPSELRSLNLSVDSG 357 (443)
Q Consensus 326 ~n~l~~lp~~~-~~~~~~lp~~L~~L~l~~N~l 357 (443)
+|+|+.+|... ..+ ++|+.|++++|.+
T Consensus 111 ~N~l~~~~~~~~~~l-----~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 GNDISVVPEGAFNDL-----SALSHLAIGANPL 138 (193)
T ss_dssp SSCCCBCCTTTTTTC-----TTCCEEECCSSCE
T ss_pred CCCCCeeChhhhhcC-----ccccEEEeCCCCe
Confidence 55555554432 222 3555555555543
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=6.4e-14 Score=122.22 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=102.5
Q ss_pred cccCCcccCCcccceeecccccccccccc-cccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCC
Q 046017 189 ESLPSSLCMLKSLRFLETIACKKLERLPE-SLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNEL 267 (443)
Q Consensus 189 ~~lp~~~~~l~~L~~L~ls~n~~~~~~p~-~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l 267 (443)
+.+|..+.. +|++|++++|.+.+..+. .++.+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..+
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 98 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF 98 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh
Confidence 344544433 899999999887665553 48899999999999999998889999999999999999999988878889
Q ss_pred CCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCC
Q 046017 268 GNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKR 308 (443)
Q Consensus 268 ~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~ 308 (443)
..+++|++|++++|+++.+ |..+..+++|++|++++|.+..
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 9999999999999999955 7788999999999999999984
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.1e-16 Score=140.57 Aligned_cols=134 Identities=21% Similarity=0.127 Sum_probs=111.2
Q ss_pred ccCCcccceeecccccccccccc------cccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCC
Q 046017 195 LCMLKSLRFLETIACKKLERLPE------SLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELG 268 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~------~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 268 (443)
+.....++.++++.+.+.+.+|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 44556777888888777777665 78889999999999987765 66 7888999999999999885 6777777
Q ss_pred CCCCCceEEecCCCCcccChhccCCCCCCEEEccCCCCCCCCh--hhhCCCCCCeeeCCCCCCCcc
Q 046017 269 NLKCLAALIVKGTAIREVPESLGYLSSLAKLELSNNNLKRTPE--SLYQLSSLKYLKPFENNSDRI 332 (443)
Q Consensus 269 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp~--~l~~l~~L~~L~ls~n~l~~l 332 (443)
.+++|++|++++|+++.+| .+..+++|++|++++|+++.++. .+..+++|++|++++|.+...
T Consensus 91 ~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 7789999999999999887 57888899999999999998764 788899999999999988544
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.51 E-value=1.3e-14 Score=137.77 Aligned_cols=88 Identities=14% Similarity=0.191 Sum_probs=47.9
Q ss_pred CCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCC-EEEccCCCCCCCC-hhhhCCCCCCee
Q 046017 246 LKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLA-KLELSNNNLKRTP-ESLYQLSSLKYL 322 (443)
Q Consensus 246 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~-~L~ls~n~l~~lp-~~l~~l~~L~~L 322 (443)
+++|+.+++++|++...-...|.++++|+.+++.+| ++.++ .+|..+++|+ .+++.+ .++.++ ..|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 455566666555553333334555556666666554 44443 2345555565 666655 455543 455566666666
Q ss_pred eCCCCCCCccCcc
Q 046017 323 KPFENNSDRIPEY 335 (443)
Q Consensus 323 ~ls~n~l~~lp~~ 335 (443)
++++|+++.|+..
T Consensus 303 ~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 303 LATGDKITTLGDE 315 (329)
T ss_dssp EECSSCCCEECTT
T ss_pred EeCCCccCccchh
Confidence 6656666555553
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=2.2e-13 Score=117.11 Aligned_cols=109 Identities=22% Similarity=0.280 Sum_probs=63.0
Q ss_pred CCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChh-ccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeC
Q 046017 247 KSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKP 324 (443)
Q Consensus 247 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~l 324 (443)
++|++|++++|++.+..+..+..+++|++|++++|.++.+|.. +..+++|++|++++|+++.+|. .+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 4556666666655443334455566666666666666655433 4556666666666666666553 3456666666666
Q ss_pred CCCCCCccCcccccCCCCCcccccccccccCCCCc
Q 046017 325 FENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGNS 359 (443)
Q Consensus 325 s~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~~ 359 (443)
++|+++.+|...... .++|++|++++|.+..
T Consensus 108 ~~N~l~~~~~~~~~~----l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDR----LTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCSCCCTTTTTT----CTTCCEEECCSSCBCC
T ss_pred cCCcceEeCHHHhcC----CcccCEEEecCCCeec
Confidence 666666666543221 1466666666665543
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=2.4e-13 Score=118.57 Aligned_cols=125 Identities=23% Similarity=0.244 Sum_probs=102.0
Q ss_pred ceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCC
Q 046017 202 RFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGT 281 (443)
Q Consensus 202 ~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 281 (443)
+.++++++.+ ..+|..+. ++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGL-KVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCC-CcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4677777554 45665543 57889999987765 67788888999999999999987766677889999999999999
Q ss_pred CCcccCh-hccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCC
Q 046017 282 AIREVPE-SLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSD 330 (443)
Q Consensus 282 ~l~~lp~-~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~ 330 (443)
.++.++. .+..+++|+.|++++|+++.+|. .+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9997764 58889999999999999998875 5788999999999999874
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=9.8e-14 Score=131.76 Aligned_cols=125 Identities=11% Similarity=0.032 Sum_probs=86.6
Q ss_pred CcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc-eE
Q 046017 198 LKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA-AL 276 (443)
Q Consensus 198 l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~-~L 276 (443)
..++..+.+.++-....+......+++|+.+++++|.+....+..|..+++|+.+++.+| +...-+..|.++++|+ .+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 345555655543211111111123678888888887766555567888888888888876 5444445678888888 88
Q ss_pred EecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeC
Q 046017 277 IVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKP 324 (443)
Q Consensus 277 ~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~l 324 (443)
++.+ +++.++ .+|..+++|+.+++++|+++.++ ..|.++++|+.++.
T Consensus 280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 8887 777664 66788888999998888888886 47888888888764
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.46 E-value=4.6e-13 Score=115.10 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=101.2
Q ss_pred cceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecC
Q 046017 201 LRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKG 280 (443)
Q Consensus 201 L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 280 (443)
.+.++++++.+ ..+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l-~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGL-TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCC-SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCC-ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45677766543 3455433 36888888888887766566678889999999999988665555678899999999999
Q ss_pred CCCcccChh-ccCCCCCCEEEccCCCCCCCChh-hhCCCCCCeeeCCCCCCCcc
Q 046017 281 TAIREVPES-LGYLSSLAKLELSNNNLKRTPES-LYQLSSLKYLKPFENNSDRI 332 (443)
Q Consensus 281 n~l~~lp~~-~~~l~~L~~L~ls~n~l~~lp~~-l~~l~~L~~L~ls~n~l~~l 332 (443)
|+++.+|.. +..+++|++|++++|+++.+|.. +..+++|++|++++|.+...
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 999977764 67889999999999999988864 57899999999999988543
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=4.3e-12 Score=123.41 Aligned_cols=153 Identities=12% Similarity=0.139 Sum_probs=101.8
Q ss_pred cccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEeccccccc-----ccCCCCCC
Q 046017 194 SLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIF-----KRLPNELG 268 (443)
Q Consensus 194 ~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~-----~~~~~~l~ 268 (443)
.|.++++|+.+++.. +....-..+|.+ .+|+.+.+.. .+...-...|..+++|+.+++.++... ..-...|.
T Consensus 221 aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 221 AFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred HhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 366677777777765 233222344555 6777777754 344444566777888888888776553 23345677
Q ss_pred CCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccc
Q 046017 269 NLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSE 346 (443)
Q Consensus 269 ~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~ 346 (443)
++++|+.+++. +.++.++ ..|..+++|+.+.+..+ ++.+. ..|.++ +|+.+++++|.+..++...+.. +|..
T Consensus 298 ~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~---~~~~ 371 (401)
T 4fdw_A 298 GCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG---FPDD 371 (401)
T ss_dssp TCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC---SCTT
T ss_pred CCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC---CCCC
Confidence 88888888887 4477664 45677888888888554 66664 567788 8888888888887777654433 5566
Q ss_pred ccccccccC
Q 046017 347 LRSLNLSVD 355 (443)
Q Consensus 347 L~~L~l~~N 355 (443)
++.|++-.+
T Consensus 372 l~~l~vp~~ 380 (401)
T 4fdw_A 372 ITVIRVPAE 380 (401)
T ss_dssp CCEEEECGG
T ss_pred ccEEEeCHH
Confidence 777776654
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=4.5e-16 Score=136.68 Aligned_cols=134 Identities=19% Similarity=0.192 Sum_probs=115.7
Q ss_pred ccCCCCcceeeccCccCCCCCCc------hhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChhccC
Q 046017 219 LGQLALLCELKMIKCSSFESLPS------SLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPESLGY 292 (443)
Q Consensus 219 l~~l~~L~~L~ls~n~~~~~~p~------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~ 292 (443)
+.....++.++++.+.+.+.+|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++.+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 44556777778888777777666 89999999999999999865 77 788999999999999999999988888
Q ss_pred CCCCCEEEccCCCCCCCChhhhCCCCCCeeeCCCCCCCccCc--ccccCCCCCcccccccccccCCCCcc
Q 046017 293 LSSLAKLELSNNNLKRTPESLYQLSSLKYLKPFENNSDRIPE--YLRSSPTSIPSELRSLNLSVDSGNSL 360 (443)
Q Consensus 293 l~~L~~L~ls~n~l~~lp~~l~~l~~L~~L~ls~n~l~~lp~--~~~~~~~~lp~~L~~L~l~~N~l~~l 360 (443)
+++|++|++++|+++.+| .+..+++|++|++++|+++.++. .+..+ ++|++|++++|.+...
T Consensus 92 ~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l-----~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAAL-----DKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTT-----TTCSEEEECSCHHHHH
T ss_pred CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcC-----CCCCEEEecCCccccc
Confidence 899999999999999987 68899999999999999998775 45554 7999999999976554
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=2.2e-12 Score=110.41 Aligned_cols=107 Identities=19% Similarity=0.266 Sum_probs=61.6
Q ss_pred CcEecccccccccCCCCCCCCCCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCChh-hhCCCCCCeeeCCCC
Q 046017 250 TPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPES-LYQLSSLKYLKPFEN 327 (443)
Q Consensus 250 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~~-l~~l~~L~~L~ls~n 327 (443)
+.+++++|.+ +.+|..+. ++|++|++++|+|+.+ |..+..+++|++|+|++|+++.+|.. +..+++|++|++++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4455555554 34454433 5566666666666654 34455666666666666666666543 456666666666666
Q ss_pred CCCccCcc-cccCCCCCcccccccccccCCCCcccCCh
Q 046017 328 NSDRIPEY-LRSSPTSIPSELRSLNLSVDSGNSLNLDL 364 (443)
Q Consensus 328 ~l~~lp~~-~~~~~~~lp~~L~~L~l~~N~l~~l~~~~ 364 (443)
+|+.+|.. +..+ ++|++|++++|.+...+..+
T Consensus 92 ~l~~l~~~~~~~l-----~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 92 HLKSIPRGAFDNL-----KSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp CCCCCCTTTTTTC-----TTCSEEECCSSCBCTTBGGG
T ss_pred ccceeCHHHhccc-----cCCCEEEeCCCCcccccccH
Confidence 66666654 3332 46666666666665554433
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=2.3e-12 Score=110.33 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=84.6
Q ss_pred ceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChh-ccCCCCCCEEEccCC
Q 046017 226 CELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSNN 304 (443)
Q Consensus 226 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~n 304 (443)
+.++++++.+ +.+|..+. ++|++|++++|++.+..|..+..+++|++|++++|+|+.+|.. +..+++|++|++++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 5677777554 45665543 7788888888888776677788888888888888888888765 478899999999999
Q ss_pred CCCCCChh-hhCCCCCCeeeCCCCCCCccCcc
Q 046017 305 NLKRTPES-LYQLSSLKYLKPFENNSDRIPEY 335 (443)
Q Consensus 305 ~l~~lp~~-l~~l~~L~~L~ls~n~l~~lp~~ 335 (443)
+++.+|.. +..+++|++|++++|.+...+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 99988864 88899999999999988766653
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=6.5e-12 Score=107.10 Aligned_cols=84 Identities=23% Similarity=0.317 Sum_probs=39.5
Q ss_pred CCCceEEecCCCCccc-ChhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCCCCccCcc-cccCCCCCcccc
Q 046017 271 KCLAALIVKGTAIREV-PESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENNSDRIPEY-LRSSPTSIPSEL 347 (443)
Q Consensus 271 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~~-~~~~~~~lp~~L 347 (443)
++|++|++++|+|+.+ |..+..+++|++|++++|+++.+|. .+..+++|++|++++|+|+.+|.. +..+ ++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-----~~L 104 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL-----KSL 104 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----TTC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCC-----CCC
Confidence 4444455555544444 2334444555555555555554443 234455555555555555444443 2222 345
Q ss_pred cccccccCCCCc
Q 046017 348 RSLNLSVDSGNS 359 (443)
Q Consensus 348 ~~L~l~~N~l~~ 359 (443)
++|++++|.++.
T Consensus 105 ~~L~L~~N~~~c 116 (170)
T 3g39_A 105 THIWLLNNPWDC 116 (170)
T ss_dssp CEEECCSSCBCT
T ss_pred CEEEeCCCCCCC
Confidence 555555554443
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=8.7e-12 Score=106.29 Aligned_cols=107 Identities=23% Similarity=0.272 Sum_probs=78.9
Q ss_pred cceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccChh-ccCCCCCCEEEccC
Q 046017 225 LCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVPES-LGYLSSLAKLELSN 303 (443)
Q Consensus 225 L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~~-~~~l~~L~~L~ls~ 303 (443)
.+.+++++|.+. .+|..+ .++|++|++++|.+.+..|..+..+++|++|++++|+|+.+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 356667765543 355444 36778888888877766677777888888888888888877654 47788888888888
Q ss_pred CCCCCCCh-hhhCCCCCCeeeCCCCCCCccCc
Q 046017 304 NNLKRTPE-SLYQLSSLKYLKPFENNSDRIPE 334 (443)
Q Consensus 304 n~l~~lp~-~l~~l~~L~~L~ls~n~l~~lp~ 334 (443)
|+++.+|. .+..+++|++|++++|.+.-.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88888775 47888888888888888765443
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.27 E-value=1.6e-10 Score=112.34 Aligned_cols=255 Identities=11% Similarity=0.074 Sum_probs=159.9
Q ss_pred cCCCcceEEecCCCCCCcCC-ccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcE
Q 046017 17 ERPCSCGLRLKNCSSLESFP-SSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSE 94 (443)
Q Consensus 17 ~~~~L~~L~ls~~~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~ 94 (443)
.+..++.+.+.+. .+.++ .+|.++ +|+.+.+..+ +...-..+|.+. +|+.+.+.. .++.++ ..|.++++|+.
T Consensus 111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3467777777653 34444 456664 6888888764 333334456663 688888865 455554 45666655555
Q ss_pred EecCCCCCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC-------CCCCcCEEEccCCCCCCCCCCCCCCcc
Q 046017 95 LELKNSSEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL-------KLKSLRRIKMSKCSNLKRFPKIASCNK 167 (443)
Q Consensus 95 L~ls~~~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~-------~l~~L~~L~l~~~~~l~~~~~~~~l~~ 167 (443)
+++++ |.++.++.......+|+.+.+..+-.. .+++|+.+++..+ ++.++.
T Consensus 185 l~l~~--------------n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~------ 242 (401)
T 4fdw_A 185 ADLSK--------------TKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQ------ 242 (401)
T ss_dssp EECTT--------------SCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT--CCEECT------
T ss_pred eecCC--------------CcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC--ccCccc------
Confidence 55543 456666555444566666666543100 3444444444431 222211
Q ss_pred ccccCcccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCC-----CCCCch
Q 046017 168 VGITGIKRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSF-----ESLPSS 242 (443)
Q Consensus 168 L~l~~l~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~-----~~~p~~ 242 (443)
..|.+ .+|+.+.+.. .....-..+|.++++|+.+++.++... ..-+..
T Consensus 243 -------------------------~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a 295 (401)
T 4fdw_A 243 -------------------------EAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC 295 (401)
T ss_dssp -------------------------TTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT
T ss_pred -------------------------ccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH
Confidence 22334 5788888844 444444567888889999988876543 234567
Q ss_pred hhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCC-CC
Q 046017 243 LCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLS-SL 319 (443)
Q Consensus 243 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~-~L 319 (443)
|..+++|+.+++.. .+...-...|.++++|+.+.+..+ ++.++ .+|..+ +|+.+++.+|.+..++ ..+.+++ .+
T Consensus 296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l 372 (401)
T 4fdw_A 296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDI 372 (401)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTC
T ss_pred hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCc
Confidence 88889999999984 354444557888899999999654 66664 457778 9999999999888765 4566664 67
Q ss_pred CeeeCCCCCC
Q 046017 320 KYLKPFENNS 329 (443)
Q Consensus 320 ~~L~ls~n~l 329 (443)
+.|++..+.+
T Consensus 373 ~~l~vp~~~~ 382 (401)
T 4fdw_A 373 TVIRVPAESV 382 (401)
T ss_dssp CEEEECGGGH
T ss_pred cEEEeCHHHH
Confidence 7887776554
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=4.8e-13 Score=128.86 Aligned_cols=156 Identities=18% Similarity=0.129 Sum_probs=100.0
Q ss_pred cccceeeccccccccccccc----cc-CCCCcceeeccCccCCCCCCch-hhcCCCCCcEecccccccccCCCCC-----
Q 046017 199 KSLRFLETIACKKLERLPES----LG-QLALLCELKMIKCSSFESLPSS-LCMLKSLTPLAIIDCKIFKRLPNEL----- 267 (443)
Q Consensus 199 ~~L~~L~ls~n~~~~~~p~~----l~-~l~~L~~L~ls~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~l----- 267 (443)
+.|++|++++|.+....... +. ..++|++|+|++|.+....... ...+++|++|++++|.+...-...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 56788888887765432222 22 2267888888887764432222 2235678888888887743322222
Q ss_pred CCCCCCceEEecCCCCcc-----cChhccCCCCCCEEEccCCCCCC-----CChhhhCCCCCCeeeCCCCCCCcc-----
Q 046017 268 GNLKCLAALIVKGTAIRE-----VPESLGYLSSLAKLELSNNNLKR-----TPESLYQLSSLKYLKPFENNSDRI----- 332 (443)
Q Consensus 268 ~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~ls~n~l~~-----lp~~l~~l~~L~~L~ls~n~l~~l----- 332 (443)
...++|++|++++|.|+. ++..+...++|++|+|++|.++. ++..+...++|++|++++|.|+..
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 245678888888888763 45555677888888888888773 345567777888888888888643
Q ss_pred CcccccCCCCCcccccccccccCCCCc
Q 046017 333 PEYLRSSPTSIPSELRSLNLSVDSGNS 359 (443)
Q Consensus 333 p~~~~~~~~~lp~~L~~L~l~~N~l~~ 359 (443)
+..+... ++|++|++++|.++.
T Consensus 232 ~~~L~~~-----~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREH-----PSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHC-----SSCCEEECTTSSCCH
T ss_pred HHHHHhC-----CCCCEEeccCCCCCH
Confidence 2222222 568888888887654
No 144
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.10 E-value=6.3e-09 Score=101.01 Aligned_cols=287 Identities=12% Similarity=0.077 Sum_probs=151.5
Q ss_pred ccccCCCCCcEEeccccccccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecCCC---------CCCCCc
Q 046017 37 SSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELKNS---------SEFEYL 106 (443)
Q Consensus 37 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~~---------~~l~~L 106 (443)
.+|.++.+|+.+.+.. .+...-..+|.++++|+.+++..+ ++.++ ..|.++.+|+.+.+... .... +
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~-~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCD-F 141 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCC-C
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccc-c
Confidence 3566677777777754 222222345666777777776543 44444 45556666666555431 1111 1
Q ss_pred cEEEEeCCCCccc-CccccCCCCCCEEeccCCCCC-------CCCCcCEEEccCCCCCCCCCCC--C---CCccccccCc
Q 046017 107 RVLRVEGAAIREL-PESIGKSTLLSELELKNCSEL-------KLKSLRRIKMSKCSNLKRFPKI--A---SCNKVGITGI 173 (443)
Q Consensus 107 ~~L~l~~n~~~~l-p~~l~~l~~L~~L~l~~n~~~-------~l~~L~~L~l~~~~~l~~~~~~--~---~l~~L~l~~l 173 (443)
....+.. ....+ ...+.++++|+.+.+..+-.. .+.+|+.+++..+ ++.++.. . .++.+.+.
T Consensus 142 ~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~-- 216 (394)
T 4fs7_A 142 KEITIPE-GVTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFP-- 216 (394)
T ss_dssp SEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCC--
T ss_pred cccccCc-cccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecC--
Confidence 1111111 11222 233556667777776553211 3444555544331 2222221 1 11111110
Q ss_pred ccccccccccCCCCCcccCCcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEe
Q 046017 174 KRLSSTLRLKNCSSLESLPSSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLA 253 (443)
Q Consensus 174 ~~l~~~l~~~~~~~l~~lp~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~ 253 (443)
.....+........+|+.+.+.. .....-...+..+..++.+.+..+ ........+..+..++.+.
T Consensus 217 ------------~~~~~i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~ 282 (394)
T 4fs7_A 217 ------------NSLYYLGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVI 282 (394)
T ss_dssp ------------TTCCEECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEE
T ss_pred ------------CCceEeehhhcccCCCceEEECC-CceecccccccccccceeEEcCCC-cceeeccccccccccceec
Confidence 00111122223345666666654 222222345666777777777663 3333344566677777777
Q ss_pred cccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCc
Q 046017 254 IIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDR 331 (443)
Q Consensus 254 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~ 331 (443)
.....+ ....+..+.+|+.+.+.++ ++.++ .+|..+.+|+.+++.++ ++.+. ..|.+|++|+.+++..+ ++.
T Consensus 283 ~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~ 356 (394)
T 4fs7_A 283 YGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRK 356 (394)
T ss_dssp ECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCE
T ss_pred cCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccE
Confidence 665432 1234667788888888654 55554 45677888888888644 66664 56788888888888765 777
Q ss_pred cCcccccCCCCCcccccccccccC
Q 046017 332 IPEYLRSSPTSIPSELRSLNLSVD 355 (443)
Q Consensus 332 lp~~~~~~~~~lp~~L~~L~l~~N 355 (443)
|+...+.-. .+|+++++..+
T Consensus 357 I~~~aF~~C----~~L~~i~lp~~ 376 (394)
T 4fs7_A 357 IGANAFQGC----INLKKVELPKR 376 (394)
T ss_dssp ECTTTBTTC----TTCCEEEEEGG
T ss_pred ehHHHhhCC----CCCCEEEECCC
Confidence 765444321 57777776543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.09 E-value=6.8e-12 Score=120.76 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=103.5
Q ss_pred Ccccceeecccccccccccccc-cCCCCcceeeccCccCCCCCCchh-----hcCCCCCcEecccccccc----cCCCCC
Q 046017 198 LKSLRFLETIACKKLERLPESL-GQLALLCELKMIKCSSFESLPSSL-----CMLKSLTPLAIIDCKIFK----RLPNEL 267 (443)
Q Consensus 198 l~~L~~L~ls~n~~~~~~p~~l-~~l~~L~~L~ls~n~~~~~~p~~~-----~~l~~L~~L~l~~n~~~~----~~~~~l 267 (443)
.++|++|++++|.+.......+ ..+++|++|+|++|.+.......+ ...++|++|++++|.+.. .++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 3689999999998755322222 345789999999998765433333 235789999999998854 233445
Q ss_pred CCCCCCceEEecCCCCcc-----cChhccCCCCCCEEEccCCCCCC-----CChhhhCCCCCCeeeCCCCCCCccC
Q 046017 268 GNLKCLAALIVKGTAIRE-----VPESLGYLSSLAKLELSNNNLKR-----TPESLYQLSSLKYLKPFENNSDRIP 333 (443)
Q Consensus 268 ~~l~~L~~L~l~~n~l~~-----lp~~~~~l~~L~~L~ls~n~l~~-----lp~~l~~l~~L~~L~ls~n~l~~lp 333 (443)
...++|++|++++|.|+. ++..+...++|++|+|++|.++. ++..+...++|++|+|++|.|+...
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 678899999999999883 45667788899999999999984 3456677899999999999997543
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.08 E-value=2.6e-10 Score=108.75 Aligned_cols=102 Identities=22% Similarity=0.087 Sum_probs=49.5
Q ss_pred ecccccccccccccccCCCCcceeeccC-ccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCC
Q 046017 205 ETIACKKLERLPESLGQLALLCELKMIK-CSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAI 283 (443)
Q Consensus 205 ~ls~n~~~~~~p~~l~~l~~L~~L~ls~-n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 283 (443)
+.++++.+..+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|++.+..|..|..+++|+.|+|++|+|
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 4444312333444 55555555555553 444443334455555555555555555444444455555555555555555
Q ss_pred cccChhccCCCCCCEEEccCCCCC
Q 046017 284 REVPESLGYLSSLAKLELSNNNLK 307 (443)
Q Consensus 284 ~~lp~~~~~l~~L~~L~ls~n~l~ 307 (443)
+.+|..+.....|+.|++.+|.+.
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ceeCHHHcccCCceEEEeeCCCcc
Confidence 555443322222555555555554
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=5e-10 Score=106.83 Aligned_cols=104 Identities=24% Similarity=0.186 Sum_probs=78.0
Q ss_pred eeeccCccCCCCCCchhhcCCCCCcEeccc-ccccccCCCCCCCCCCCceEEecCCCCcccCh-hccCCCCCCEEEccCC
Q 046017 227 ELKMIKCSSFESLPSSLCMLKSLTPLAIID-CKIFKRLPNELGNLKCLAALIVKGTAIREVPE-SLGYLSSLAKLELSNN 304 (443)
Q Consensus 227 ~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~ls~n 304 (443)
.++.++++....+|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|+|+.+++ .|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 457777523455777 88888888888886 77766555678888888888888888886654 5688888888888888
Q ss_pred CCCCCChhhhCCCCCCeeeCCCCCCCc
Q 046017 305 NLKRTPESLYQLSSLKYLKPFENNSDR 331 (443)
Q Consensus 305 ~l~~lp~~l~~l~~L~~L~ls~n~l~~ 331 (443)
+|+.+|..+.....|+.|++.+|.+..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 888887544333348888888888754
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.95 E-value=5e-08 Score=94.65 Aligned_cols=270 Identities=12% Similarity=0.086 Sum_probs=150.2
Q ss_pred ccccCCCCcccEEEeecCchhhhh-hhhccCCCCcEEecCCC---------CCCCCccEEEEeCCCCcccC-ccccCCCC
Q 046017 60 LDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSELELKNS---------SEFEYLRVLRVEGAAIRELP-ESIGKSTL 128 (443)
Q Consensus 60 p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~~---------~~l~~L~~L~l~~n~~~~lp-~~l~~l~~ 128 (443)
..+|.++.+|+.+.+.. .++.++ .+|.++++|+.+++..+ .++.+|+.+.+..+ +..+. ..+.++..
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 45788999999999974 477776 67889999999999653 23345555444332 22222 22333333
Q ss_pred CCEEeccCCCC------CCCCCcCEEEccCCCCCCCCCCC-----CCCccccc-cCcccccccccccCCCCCcccCCccc
Q 046017 129 LSELELKNCSE------LKLKSLRRIKMSKCSNLKRFPKI-----ASCNKVGI-TGIKRLSSTLRLKNCSSLESLPSSLC 196 (443)
Q Consensus 129 L~~L~l~~n~~------~~l~~L~~L~l~~~~~l~~~~~~-----~~l~~L~l-~~l~~l~~~l~~~~~~~l~~lp~~~~ 196 (443)
++......... ..+.+|+.+.+.+. +..++.. .+++.+.+ .++..++ ...+.
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~~~~I~--------------~~~F~ 205 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRNLKIIR--------------DYCFA 205 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTTCCEEC--------------TTTTT
T ss_pred cccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCCceEeC--------------chhhc
Confidence 22222222111 15677777777642 2333322 22333332 1111111 12244
Q ss_pred CCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceE
Q 046017 197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL 276 (443)
Q Consensus 197 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 276 (443)
++..|+.+.+..+.. .+.........|+.+.+.. .....-...+..+..++.+.+..+.. ......+..+..++.+
T Consensus 206 ~~~~L~~i~~~~~~~--~i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~ 281 (394)
T 4fs7_A 206 ECILLENMEFPNSLY--YLGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKV 281 (394)
T ss_dssp TCTTCCBCCCCTTCC--EECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEE
T ss_pred cccccceeecCCCce--EeehhhcccCCCceEEECC-CceecccccccccccceeEEcCCCcc-eeecccccccccccee
Confidence 555666665544221 1222233445666666654 22222234556677777777765532 3334456677777777
Q ss_pred EecCCCCcccChhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccC
Q 046017 277 IVKGTAIREVPESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVD 355 (443)
Q Consensus 277 ~l~~n~l~~lp~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N 355 (443)
......+. ...+..+.+|+.+.+.++ ++.++ ..+.++++|+.+++.. .++.|+...+.-. .+|+.+++..|
T Consensus 282 ~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c----~~L~~i~lp~~ 353 (394)
T 4fs7_A 282 IYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGC----TSLSNINFPLS 353 (394)
T ss_dssp EECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTC----TTCCEECCCTT
T ss_pred ccCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCC----CCCCEEEECcc
Confidence 76554322 234667788998888765 66665 4688889999998864 4777765443321 67888887655
Q ss_pred CCCcc
Q 046017 356 SGNSL 360 (443)
Q Consensus 356 ~l~~l 360 (443)
++.+
T Consensus 354 -l~~I 357 (394)
T 4fs7_A 354 -LRKI 357 (394)
T ss_dssp -CCEE
T ss_pred -ccEe
Confidence 4444
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.90 E-value=1.5e-07 Score=91.23 Aligned_cols=108 Identities=10% Similarity=0.178 Sum_probs=65.3
Q ss_pred ccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCC
Q 046017 217 ESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSS 295 (443)
Q Consensus 217 ~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~ 295 (443)
.+|.++..|+.+.+... ....-...|..+++|+.+.+.. .+...-...|.++.+|+.+++..+ ++.+. .+|..+.+
T Consensus 259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 35666677777776542 2222334566677777777753 232222345666777777777643 55553 35666777
Q ss_pred CCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCC
Q 046017 296 LAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENN 328 (443)
Q Consensus 296 L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~ 328 (443)
|+.+.+..+ ++.+. ..|.+|++|+.+++.++.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 777777543 66664 467777777777777654
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.82 E-value=3.1e-07 Score=88.97 Aligned_cols=290 Identities=11% Similarity=0.127 Sum_probs=170.0
Q ss_pred CcceEEecCCCCCCcC-CccccCCCCCcEEeccccc---cccccccccCCCCcccEEEeecCchhhhh-hhhccCCCCcE
Q 046017 20 CSCGLRLKNCSSLESF-PSSLCVLKSLRSLQIIDCK---KFERLLDELGNLETLLVLRVEGAAIRELS-QSLGQLALLSE 94 (443)
Q Consensus 20 ~L~~L~ls~~~~~~~~-p~~~~~l~~L~~L~L~~n~---~~~~~p~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~ 94 (443)
.|+.+.+... .+.+ ..+|.++++|+.+.+..+. +...-..+|..+.+|+.+.+..+ ++.++ ..|..+.+|+.
T Consensus 65 ~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 5888888754 4444 4578899999999987652 22222446777888887766543 44444 56777888888
Q ss_pred EecCCC---------CCCCCccEEEEeCCCCcccCccccCCCCCCEEeccCCCCC-------CCCCcCEEEccCCCCCCC
Q 046017 95 LELKNS---------SEFEYLRVLRVEGAAIRELPESIGKSTLLSELELKNCSEL-------KLKSLRRIKMSKCSNLKR 158 (443)
Q Consensus 95 L~ls~~---------~~l~~L~~L~l~~n~~~~lp~~l~~l~~L~~L~l~~n~~~-------~l~~L~~L~l~~~~~l~~ 158 (443)
+.+... .....|+.+.+..+ ++.+.........|+.+.+..+-.. .+.+++....... ....
T Consensus 142 i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~-~~~~ 219 (394)
T 4gt6_A 142 VTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSE-SYPA 219 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCS-SSCB
T ss_pred ccccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceeccccc-cccc
Confidence 887542 24566777777544 4455443334456777776553211 3344444443321 1111
Q ss_pred CCCC----CCCcc---ccc---cCcc--cccccccccCCCCCccc-CCcccCCcccceeecccccccccccccccCCCCc
Q 046017 159 FPKI----ASCNK---VGI---TGIK--RLSSTLRLKNCSSLESL-PSSLCMLKSLRFLETIACKKLERLPESLGQLALL 225 (443)
Q Consensus 159 ~~~~----~~l~~---L~l---~~l~--~l~~~l~~~~~~~l~~l-p~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L 225 (443)
+... ..... ... .... .+|. .+..+ ...|..+++|+.+.+.. .....-...+.+++.|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--------~v~~i~~~aF~~c~~L~~i~lp~-~~~~I~~~aF~~c~~L 290 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPN--------GVARIETHAFDSCAYLASVKMPD-SVVSIGTGAFMNCPAL 290 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCT--------TEEEECTTTTTTCSSCCEEECCT-TCCEECTTTTTTCTTC
T ss_pred ccceeecccccccccccccccccccceEEcCC--------cceEcccceeeecccccEEeccc-ccceecCccccccccc
Confidence 1110 00000 000 0000 1111 11122 13467788899998866 3333334578889999
Q ss_pred ceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceEEecCCCCcccC-hhccCCCCCCEEEccCC
Q 046017 226 CELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAALIVKGTAIREVP-ESLGYLSSLAKLELSNN 304 (443)
Q Consensus 226 ~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n 304 (443)
+.+.+.. .+...-...|..+.+|+.+++..+ +...-...|.++.+|+.+.+..+ ++.+. .+|.++++|+.+++.++
T Consensus 291 ~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 291 QDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred ccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 9999975 444444457888999999999764 43333457889999999999654 67664 56889999999999987
Q ss_pred CCCCCChhhhCCCCCCeeeCCCCC
Q 046017 305 NLKRTPESLYQLSSLKYLKPFENN 328 (443)
Q Consensus 305 ~l~~lp~~l~~l~~L~~L~ls~n~ 328 (443)
.... ..+..+..|+.+.+..+.
T Consensus 368 ~~~~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 368 RSQW--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp HHHH--HTCBCCCCC---------
T ss_pred eeeh--hhhhccCCCCEEEeCCCC
Confidence 4331 345667788887766543
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=8.6e-10 Score=105.33 Aligned_cols=158 Identities=14% Similarity=0.104 Sum_probs=91.3
Q ss_pred CcccCCcccceeecccccc---------cccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccC
Q 046017 193 SSLCMLKSLRFLETIACKK---------LERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRL 263 (443)
Q Consensus 193 ~~~~~l~~L~~L~ls~n~~---------~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~ 263 (443)
+++..+++|+.|.+..... .+.+...+..+++|+.|.+++|... .++. + .+++|++|++..|.+....
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHH
T ss_pred HhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHH
Confidence 3345566777777654321 1123344556778888888776322 2333 3 3678888888777653322
Q ss_pred CCCC--CCCCCCceEEecCC--C------CcccChhc--cCCCCCCEEEccCCCCCC-CChhh---hCCCCCCeeeCCCC
Q 046017 264 PNEL--GNLKCLAALIVKGT--A------IREVPESL--GYLSSLAKLELSNNNLKR-TPESL---YQLSSLKYLKPFEN 327 (443)
Q Consensus 264 ~~~l--~~l~~L~~L~l~~n--~------l~~lp~~~--~~l~~L~~L~ls~n~l~~-lp~~l---~~l~~L~~L~ls~n 327 (443)
...+ ..+++|+.|+|+.+ . +..+...+ ..+++|+.|++++|.+.. .+..+ ..+++|++|+|+.|
T Consensus 210 l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 210 VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 2222 25778888887531 1 22222222 246788888888887762 22222 24678888888888
Q ss_pred CCCc-----cCcccccCCCCCcccccccccccCCCC
Q 046017 328 NSDR-----IPEYLRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 328 ~l~~-----lp~~~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
.++. ++..+..+ ++|+.|++++|.++
T Consensus 290 ~L~d~G~~~L~~~L~~l-----~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 290 VLTDEGARLLLDHVDKI-----KHLKFINMKYNYLS 320 (362)
T ss_dssp CCBHHHHHHHHTTHHHH-----TTCSEEECCSBBCC
T ss_pred CCChHHHHHHHhhcccC-----CcceEEECCCCcCC
Confidence 8765 33322222 57888888887654
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=3.6e-09 Score=101.04 Aligned_cols=136 Identities=16% Similarity=0.121 Sum_probs=89.8
Q ss_pred CcccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhh--cCCCCCcEecccc--cccc-----cC
Q 046017 193 SSLCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLC--MLKSLTPLAIIDC--KIFK-----RL 263 (443)
Q Consensus 193 ~~~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~--~l~~L~~L~l~~n--~~~~-----~~ 263 (443)
..+..+++|+.|++++|... .++. + .+++|++|++..|.+.......+. .+++|+.|+|+.+ ...+ .+
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 33556778888888876322 2333 3 378888888887765433223333 6788999888532 1111 11
Q ss_pred CCCC--CCCCCCceEEecCCCCcc-cChhc---cCCCCCCEEEccCCCCCC-----CChhhhCCCCCCeeeCCCCCCCc
Q 046017 264 PNEL--GNLKCLAALIVKGTAIRE-VPESL---GYLSSLAKLELSNNNLKR-----TPESLYQLSSLKYLKPFENNSDR 331 (443)
Q Consensus 264 ~~~l--~~l~~L~~L~l~~n~l~~-lp~~~---~~l~~L~~L~ls~n~l~~-----lp~~l~~l~~L~~L~ls~n~l~~ 331 (443)
...+ ..+++|++|++.+|.+.. .+..+ ..+++|++|+|+.|.+.. ++..+..+++|+.|++++|.++.
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 1122 357899999999998872 22222 357899999999999884 34455678999999999998764
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.70 E-value=5e-06 Score=79.90 Aligned_cols=134 Identities=13% Similarity=0.017 Sum_probs=68.4
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLA 274 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 274 (443)
+....+|+.+.+.. .....-...+..+..|+.+.+..+ +...-...+..+.+|+.+.+..+ +...-...+.++++|+
T Consensus 213 f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 33445555555543 222222234555666666666542 22222334555666666666432 2222223455666666
Q ss_pred eEEecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccC
Q 046017 275 ALIVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIP 333 (443)
Q Consensus 275 ~L~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp 333 (443)
.+.+.++.++.++ ..|.++.+|+.+.+..+ ++.+. ..|.+|++|+.+.+..+ ++.|.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence 6666666666553 34556666666666543 55554 35666666666655432 44443
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.66 E-value=2.3e-06 Score=82.29 Aligned_cols=149 Identities=13% Similarity=0.050 Sum_probs=97.2
Q ss_pred CCcccceeecccccccccccccccCCCCcceeeccCccCCCCCCchhhcCCCCCcEecccccccccCCCCCCCCCCCceE
Q 046017 197 MLKSLRFLETIACKKLERLPESLGQLALLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLKCLAAL 276 (443)
Q Consensus 197 ~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 276 (443)
....+..+.+.. .........+.....|+.+.+.. .........+..+..|+.+.+..+ +...-...+.++.+|+.+
T Consensus 192 ~~~~~~~~~~~~-~~~~i~~~~f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 192 AAKTGTEFTIPS-TVKTVTAYGFSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TTCCCSEEECCT-TCCEECTTTTTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccccccccc-ceeEEeecccccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 334444444433 12222234556677788887765 333333456677888988888765 333334567788889999
Q ss_pred EecCCCCcccC-hhccCCCCCCEEEccCCCCCCCC-hhhhCCCCCCeeeCCCCCCCccCcccccCCCCCccccccccccc
Q 046017 277 IVKGTAIREVP-ESLGYLSSLAKLELSNNNLKRTP-ESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSV 354 (443)
Q Consensus 277 ~l~~n~l~~lp-~~~~~l~~L~~L~ls~n~l~~lp-~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~ 354 (443)
.+..+ ++.++ ..+..+++|+.+.+.++.++.++ ..|.++++|+.+++..+ ++.|....+.-. .+|+++.+..
T Consensus 269 ~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C----~~L~~i~ip~ 342 (379)
T 4h09_A 269 NFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC----KALSTISYPK 342 (379)
T ss_dssp EECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC----TTCCCCCCCT
T ss_pred ccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC----CCCCEEEECC
Confidence 88654 55554 45778899999999988888876 57888999999998653 777766443321 5677776643
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=2.2e-08 Score=86.32 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=57.5
Q ss_pred cccccCCCCcceeeccCc-cCCCC----CCchhhcCCCCCcEeccccccccc----CCCCCCCCCCCceEEecCCCCcc-
Q 046017 216 PESLGQLALLCELKMIKC-SSFES----LPSSLCMLKSLTPLAIIDCKIFKR----LPNELGNLKCLAALIVKGTAIRE- 285 (443)
Q Consensus 216 p~~l~~l~~L~~L~ls~n-~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~- 285 (443)
...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|++++|.|+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 344556677777777776 54321 223344455666666666655321 11222333455555555555552
Q ss_pred ----cChhccCCCCCCEEEc--cCCCCCC-----CChhhhCCCCCCeeeCCCCCC
Q 046017 286 ----VPESLGYLSSLAKLEL--SNNNLKR-----TPESLYQLSSLKYLKPFENNS 329 (443)
Q Consensus 286 ----lp~~~~~l~~L~~L~l--s~n~l~~-----lp~~l~~l~~L~~L~ls~n~l 329 (443)
+...+...++|++|++ ++|.+.. +...+...++|++|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3344444455555555 4555551 223344445555555555544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=2.7e-08 Score=85.73 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=65.1
Q ss_pred hhhcCCCCCcEecccc-ccccc----CCCCCCCCCCCceEEecCCCCc-----ccChhccCCCCCCEEEccCCCCCC---
Q 046017 242 SLCMLKSLTPLAIIDC-KIFKR----LPNELGNLKCLAALIVKGTAIR-----EVPESLGYLSSLAKLELSNNNLKR--- 308 (443)
Q Consensus 242 ~~~~l~~L~~L~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~n~l~~--- 308 (443)
.+...++|++|++++| .+... +...+...++|++|++++|.|. .+...+...++|++|+|++|.|..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566777777776 55321 2233445566777777777665 234445555667777777777762
Q ss_pred --CChhhhCCCCCCeeeC--CCCCCCc-----cCcccccCCCCCcccccccccccCCCC
Q 046017 309 --TPESLYQLSSLKYLKP--FENNSDR-----IPEYLRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 309 --lp~~l~~l~~L~~L~l--s~n~l~~-----lp~~~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
+...+...++|++|++ ++|.++. +...+... ++|++|++++|.++
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n-----~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKN-----TTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHC-----SSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhC-----CCcCEEeccCCCCC
Confidence 3445666667777777 5576653 22322222 46777777766543
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=1.8e-07 Score=84.83 Aligned_cols=62 Identities=18% Similarity=0.311 Sum_probs=28.0
Q ss_pred cCCCCCcEecccccccc--cCCCCCCCCCCCceEEecCCCCcccChhccCCC--CCCEEEccCCCCC
Q 046017 245 MLKSLTPLAIIDCKIFK--RLPNELGNLKCLAALIVKGTAIREVPESLGYLS--SLAKLELSNNNLK 307 (443)
Q Consensus 245 ~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~lp~~~~~l~--~L~~L~ls~n~l~ 307 (443)
++++|+.|+|++|++.+ .++..+..+++|+.|+|++|+|+.+. .+..+. +|++|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence 34555555555555543 22333334445555555555444331 122222 4555555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=7.5e-07 Score=80.73 Aligned_cols=79 Identities=16% Similarity=0.231 Sum_probs=57.1
Q ss_pred cCCCCcceeeccCccCCC--CCCchhhcCCCCCcEecccccccccCCCCCCCCC--CCceEEecCCCCc-ccC-------
Q 046017 220 GQLALLCELKMIKCSSFE--SLPSSLCMLKSLTPLAIIDCKIFKRLPNELGNLK--CLAALIVKGTAIR-EVP------- 287 (443)
Q Consensus 220 ~~l~~L~~L~ls~n~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~l~-~lp------- 287 (443)
.++++|+.|+|++|.+.+ .+|..+..+++|+.|+|++|++.+. ..+..+. +|++|++++|.+. .+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 457889999999988876 5567777889999999999988653 2233333 8999999999887 344
Q ss_pred hhccCCCCCCEEE
Q 046017 288 ESLGYLSSLAKLE 300 (443)
Q Consensus 288 ~~~~~l~~L~~L~ 300 (443)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2245566666665
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=4.2e-06 Score=70.48 Aligned_cols=35 Identities=6% Similarity=0.088 Sum_probs=15.6
Q ss_pred CcceEEecCCCCCCcCCccccCCCCCcEEeccccc
Q 046017 20 CSCGLRLKNCSSLESFPSSLCVLKSLRSLQIIDCK 54 (443)
Q Consensus 20 ~L~~L~ls~~~~~~~~p~~~~~l~~L~~L~L~~n~ 54 (443)
+|+.||+++|.+...--..+..+++|++|+|++|.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 35555555554222211224445555555555553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=2.6e-06 Score=71.73 Aligned_cols=82 Identities=12% Similarity=0.126 Sum_probs=36.9
Q ss_pred CcceeeccCccCCCCCCchhhcCCCCCcEecccccccc-cCCCCCCCC----CCCceEEecCC-CCccc-ChhccCCCCC
Q 046017 224 LLCELKMIKCSSFESLPSSLCMLKSLTPLAIIDCKIFK-RLPNELGNL----KCLAALIVKGT-AIREV-PESLGYLSSL 296 (443)
Q Consensus 224 ~L~~L~ls~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l----~~L~~L~l~~n-~l~~l-p~~~~~l~~L 296 (443)
.|+.||+++|.++..--..+..+++|++|+|++|...+ .--..+..+ ++|++|++++| +++.- -..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34455555444333222333445555555555553211 111112221 34666666666 45511 1224456666
Q ss_pred CEEEccCCC
Q 046017 297 AKLELSNNN 305 (443)
Q Consensus 297 ~~L~ls~n~ 305 (443)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666653
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.03 E-value=0.00019 Score=61.54 Aligned_cols=56 Identities=25% Similarity=0.193 Sum_probs=25.2
Q ss_pred CCCceEEecCCCCc-----ccChhccCCCCCCEEEccCCCCC-----CCChhhhCCCCCCeeeCCC
Q 046017 271 KCLAALIVKGTAIR-----EVPESLGYLSSLAKLELSNNNLK-----RTPESLYQLSSLKYLKPFE 326 (443)
Q Consensus 271 ~~L~~L~l~~n~l~-----~lp~~~~~l~~L~~L~ls~n~l~-----~lp~~l~~l~~L~~L~ls~ 326 (443)
+.|+.|+|++|.|. .+...+..-+.|+.|+|++|.|. .+-+.+..-+.|++|+|++
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 34444444444443 22333333445555555555554 1223344444555555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.92 E-value=0.001 Score=56.99 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=9.4
Q ss_pred ccccCCCCCCEEeccCC
Q 046017 121 ESIGKSTLLSELELKNC 137 (443)
Q Consensus 121 ~~l~~l~~L~~L~l~~n 137 (443)
..+..-+.|++|+++.+
T Consensus 151 ~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 151 MAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHCSSCCEEECCCC
T ss_pred HHHHhCCCcCeEeccCC
Confidence 33444556666666554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.91 E-value=0.0016 Score=51.87 Aligned_cols=52 Identities=21% Similarity=0.238 Sum_probs=23.8
Q ss_pred eEEecCCCCc--ccChhccCCCCCCEEEccCCCCCCCCh-hhhCCCCCCeeeCCCCC
Q 046017 275 ALIVKGTAIR--EVPESLGYLSSLAKLELSNNNLKRTPE-SLYQLSSLKYLKPFENN 328 (443)
Q Consensus 275 ~L~l~~n~l~--~lp~~~~~l~~L~~L~ls~n~l~~lp~-~l~~l~~L~~L~ls~n~ 328 (443)
+++.++++++ .+|..+ .++|+.|+|++|+|+.+|. .+..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4444444444 444321 1245555555555555442 33444445555444443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.16 E-value=0.0065 Score=48.34 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=45.5
Q ss_pred CEEEccCCCCC--CCChhhhCCCCCCeeeCCCCCCCccCcccccCCCCCcccccccccccCCCC
Q 046017 297 AKLELSNNNLK--RTPESLYQLSSLKYLKPFENNSDRIPEYLRSSPTSIPSELRSLNLSVDSGN 358 (443)
Q Consensus 297 ~~L~ls~n~l~--~lp~~l~~l~~L~~L~ls~n~l~~lp~~~~~~~~~lp~~L~~L~l~~N~l~ 358 (443)
..++.++++++ .+|..+ -++|++|+|++|+|+.+|...+.. + ++|++|+|++|...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~---l-~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDA---L-PALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGG---C-TTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhh---c-cccCEEEecCCCee
Confidence 48899999998 898643 247999999999999999876542 2 58999999999764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.96 E-value=72 Score=23.18 Aligned_cols=39 Identities=13% Similarity=0.004 Sum_probs=21.5
Q ss_pred ccccCCCCCcEEeccccccccccccccCCCCcccEEEeec
Q 046017 37 SSLCVLKSLRSLQIIDCKKFERLLDELGNLETLLVLRVEG 76 (443)
Q Consensus 37 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~ 76 (443)
.+|.++.+|+.+.+.. .+...-..+|..+.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcC
Confidence 3466666666666654 22222334566666666666655
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.24 E-value=1.6e+02 Score=21.20 Aligned_cols=36 Identities=8% Similarity=-0.073 Sum_probs=15.1
Q ss_pred ccCCcccceeecccccccccccccccCCCCcceeecc
Q 046017 195 LCMLKSLRFLETIACKKLERLPESLGQLALLCELKMI 231 (443)
Q Consensus 195 ~~~l~~L~~L~ls~n~~~~~~p~~l~~l~~L~~L~ls 231 (443)
|.++++|+.+.+-. .....-..+|.++.+|+.+.+.
T Consensus 16 F~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 16 FAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEEC
T ss_pred hcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEc
Confidence 44445555554433 2222222344444444444443
Done!