BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046018
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP8|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FP9|A Chain A, Crystal Structure Of Native Strictosidine Synthase
pdb|2FP9|B Chain B, Crystal Structure Of Native Strictosidine Synthase
pdb|2FPC|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPC|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2VAQ|A Chain A, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|2VAQ|B Chain B, Structure Of Strictosidine Synthase In Complex With
Inhibitor
pdb|3V1S|A Chain A, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
pdb|3V1S|B Chain B, Scaffold Tailoring By A Newly Detected Pictet-Spenglerase
Ac-Tivity Of Strictosidine Synthase (Str1): From The
Common Tryp-Toline Skeleton To The Rare
Piperazino-Indole Framework
Length = 322
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 31/306 (10%)
Query: 1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEH--ICGRPLGIRFDKKT 58
G YT V DGR++K++G G+ +FA + + + D E +CGR I ++ +
Sbjct: 32 GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91
Query: 59 GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
LYI D Y VVG EGG ATQL T G P ++ + +D+ G++YFTD ST +
Sbjct: 92 NQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 151
Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
R + + DKTGRL+KY+ +TKE T+LL+ L G +S D +F+L+AE + +I++
Sbjct: 152 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVK 211
Query: 179 FWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL 238
+WL GP G +V ++P P N++ N++G FWV+ + + L G +
Sbjct: 212 YWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS--SSEELDGNM-------------- 254
Query: 239 PLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVL 298
G+ IK E G +LEV+ +++E DG L++G++
Sbjct: 255 ------------HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF 302
Query: 299 MPFIGI 304
+GI
Sbjct: 303 HGSVGI 308
>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With
Strictosidine
pdb|2V91|B Chain B, Structure Of Strictosidine Synthase In Complex With
Strictosidine
Length = 302
Score = 174 bits (441), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 158/306 (51%), Gaps = 31/306 (10%)
Query: 1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEH--ICGRPLGIRFDKKT 58
G YT V DGR++K++G G+ +FA + + + D E +CGR I ++ +
Sbjct: 23 GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 82
Query: 59 GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
LYI D Y VVG EGG ATQL T G P ++ + +D+ G++YFTD ST +
Sbjct: 83 NQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 142
Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
R + + DKTGRL+KY+ +TKE T+LL+ L G +S D +F+L+AE + +I++
Sbjct: 143 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVK 202
Query: 179 FWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL 238
+WL GP G +V ++P P N++ N++G FWV+ + + L G +
Sbjct: 203 YWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS--SSEELDGNM-------------- 245
Query: 239 PLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVL 298
G+ IK E G +LEV+ +++E DG L++G++
Sbjct: 246 ------------HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF 293
Query: 299 MPFIGI 304
+GI
Sbjct: 294 HGSVGI 299
>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
pdb|2FPB|B Chain B, Structure Of Strictosidine Synthase, The Biosynthetic
Entry To The Monoterpenoid Indole Alkaloid Family
Length = 322
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 97/306 (31%), Positives = 152/306 (49%), Gaps = 31/306 (10%)
Query: 1 GPYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEH--ICGRPLGIRFDKKT 58
G YT V DGR+ K++G G+ +FA + + + D E +CGR I ++ +
Sbjct: 32 GFYTSVQDGRVXKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91
Query: 59 GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118
YI D Y VVG EGG ATQL T G P ++ + +D+ G++YFTD ST +
Sbjct: 92 NQXYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 151
Query: 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILR 178
R + DKTGRL KY+ +TKE T+L + L G +S D +F+L+AE + +I++
Sbjct: 152 RGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAEFLSHQIVK 211
Query: 179 FWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL 238
+WL GP G +V ++P P N++ N++G FWV+ + + L G
Sbjct: 212 YWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVS--SSEELDGN--------------- 253
Query: 239 PLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVL 298
G+ IK E G +LEV+ +++E DG L++G++
Sbjct: 254 -----------XHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLF 302
Query: 299 MPFIGI 304
+GI
Sbjct: 303 HGSVGI 308
>pdb|2DSO|A Chain A, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|B Chain B, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|C Chain C, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|D Chain D, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|E Chain E, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
pdb|2DSO|F Chain F, Crystal Structure Of D138n Mutant Of Drp35, A 35kda Drug
Responsive Protein From Staphylococcus Aureus
Length = 333
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 36/211 (17%)
Query: 30 QRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVG-----PEGGLATQL 83
+ KE RPF + H P I+ K G L++ YLG F+ G E G Q
Sbjct: 74 ETKEIKRPF---VSH-KANPAAIKI-HKDGRLFVC--YLGDFKSTGGIFAATENGDNLQD 126
Query: 84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE 143
+ E ND+ D KG YFTD R + ++ L G + +
Sbjct: 127 IIEDLSTAYCI-NDMVFDS-KGGFYFTD------FRGYSTNPLGG-----VYYVSPDFRT 173
Query: 144 VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF----- 198
VT ++Q ++ ANG+ALS D + + ET+ R+ R L Q A +P +
Sbjct: 174 VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE 233
Query: 199 -PDNVRSNSNGEFWVALHAKKGLFGKLILLN 228
PD+ +S+ +VA++ + G++++ N
Sbjct: 234 GPDSCCIDSDDNLYVAMYGQ----GRVLVFN 260
>pdb|2DG1|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
pdb|2DG1|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus, Complexed With Ca2+
Length = 333
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 36/211 (17%)
Query: 30 QRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVG-----PEGGLATQL 83
+ KE RPF + H P I+ K G L++ YLG F+ G E G Q
Sbjct: 74 ETKEIKRPF---VSH-KANPAAIKI-HKDGRLFVC--YLGDFKSTGGIFAATENGDNLQD 126
Query: 84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE 143
+ E + D + + KG YFTD R + ++ L G + +
Sbjct: 127 IIEDLST--AYCIDDMVFDSKGGFYFTD------FRGYSTNPLGG-----VYYVSPDFRT 173
Query: 144 VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF----- 198
VT ++Q ++ ANG+ALS D + + ET+ R+ R L Q A +P +
Sbjct: 174 VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE 233
Query: 199 -PDNVRSNSNGEFWVALHAKKGLFGKLILLN 228
PD+ +S+ +VA++ + G++++ N
Sbjct: 234 GPDSCCIDSDDNLYVAMYGQ----GRVLVFN 260
>pdb|2DG0|A Chain A, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|B Chain B, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|C Chain C, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|D Chain D, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|E Chain E, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|F Chain F, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|G Chain G, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|H Chain H, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|I Chain I, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|J Chain J, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|K Chain K, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
pdb|2DG0|L Chain L, Crystal Structure Of Drp35, A 35kda Drug Responsive
Protein From Staphylococcus Aureus
Length = 333
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 91/211 (43%), Gaps = 36/211 (17%)
Query: 30 QRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVG-----PEGGLATQL 83
+ KE RPF + H P I+ K G L++ YLG F+ G E G Q
Sbjct: 74 ETKEIKRPF---VSHKA-NPAAIKI-HKDGRLFVC--YLGDFKSTGGIFAATENGDNLQD 126
Query: 84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE 143
+ E + D + + KG YFTD R + ++ L G + +
Sbjct: 127 IIEDLST--AYCIDDXVFDSKGGFYFTD------FRGYSTNPLGG-----VYYVSPDFRT 173
Query: 144 VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF----- 198
VT ++Q ++ ANG+ALS D + + ET+ R+ R L Q A +P +
Sbjct: 174 VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHE 233
Query: 199 -PDNVRSNSNGEFWVALHAKKGLFGKLILLN 228
PD+ +S+ +VA + + G++++ N
Sbjct: 234 GPDSCCIDSDDNLYVAXYGQ----GRVLVFN 260
>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant
Length = 312
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 62 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F NG+A
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 62 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F NG+A
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant
Length = 312
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 62 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F NG+A
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant
Length = 312
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 62 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F NG+A
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant
Length = 312
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 62 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F NG+A
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris
pdb|1PJX|A Chain A, 0.85 Angstrom Structure Of Squid Ganglion Dfpase
pdb|2GVV|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase) In
Complex With Dicyclopentylphosphoroamidate (Dcppa)
pdb|2GVW|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase)
Holoenzyme (Rt)
pdb|3BYC|A Chain A, Joint Neutron And X-Ray Structure Of Diisopropyl
Fluorophosphatase. Deuterium Occupancies Are 1-Q, Where
Q Is Occupancy Of H
pdb|3KGG|A Chain A, X-Ray Structure Of Perdeuterated Diisopropyl
Fluorophosphata (Dfpase): Perdeuteration Of Proteins For
Neutron Diffractio
pdb|3O4P|A Chain A, Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
Length = 314
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 64 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 123
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F NG+A
Sbjct: 124 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 179
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant
Length = 312
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 62 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F NG+A
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant
Length = 312
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 62 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F NG+A
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant
Length = 312
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 62 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F NG+A
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 62 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F NG+A
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant
Length = 312
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 62 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 121
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F +G+A
Sbjct: 122 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPDGIAV 177
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 178 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 220
>pdb|3LI3|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), D121e Mutant
Length = 314
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ N+
Sbjct: 64 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNECA 123
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F NG+A
Sbjct: 124 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 179
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase),
Mutant D229n N175D
Length = 314
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 64 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 123
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F +G+A
Sbjct: 124 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPDGIAV 179
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|2GVU|A Chain A, Crystal Structure Of Diisopropyl Fluorophosphatase
(Dfpase), Mutant D229n N120D
Length = 314
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ +D
Sbjct: 64 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCA 123
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F NG+A
Sbjct: 124 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPNGIAV 179
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|3HLI|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 64 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 123
Query: 100 IDEHKGVIYFT---------DSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG 150
D ++G ++ T D++ S Q + SI G++++ +
Sbjct: 124 FD-YEGNLWITAPAGEVAPADATASMQEK--FGSIYCFTTDGQMIQVDTA---------- 170
Query: 151 LAFANGVA---LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
F NG+A ++ R + +++AE ++ + + GP + V+ +PG
Sbjct: 171 FQFPNGIAVRHMNDGRPYQLIVAEMPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|3HLH|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 27/172 (15%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ ND
Sbjct: 64 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCA 123
Query: 100 IDEHKGVIYFT---------DSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG 150
D ++G ++ T D++ S Q + SI G++++ +
Sbjct: 124 FD-YEGNLWITAPAGEVAPADATASMQEK--FGSIYCFTTDGQMIQVDTA---------- 170
Query: 151 LAFANGVA---LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
F NG+A ++ R + +++AE ++ + + GP + V+ +PG
Sbjct: 171 FQFPNGIAVRHMNDGRPYQLIVAEMPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|3LI4|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), N120d,N175d,D229n
Mutant
Length = 314
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ +D
Sbjct: 64 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCA 123
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F +G+A
Sbjct: 124 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPDGIAV 179
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|3LI5|A Chain A, Diisopropyl Fluorophosphatase (Dfpase),
E21q,N120d,N175d,D229n Mutant
Length = 314
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P G + D+ L++AD LG VV +G ++ G+ ++ +D
Sbjct: 64 PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCDDCA 123
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + + S+ +K G + + T ++ + F +G+A
Sbjct: 124 FD-YEGNLWITAPAGEVAPADYTRSMQ--EKFGSIYCF-TTDGQMIQVDTAFQFPDGIAV 179
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AET ++ + + GP + V+ +PG
Sbjct: 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|3I1C|A Chain A, Crystal Structure Of A Novel Engineered Diels-Alderase:
Da_20_00_a74i
Length = 324
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 69/168 (41%), Gaps = 19/168 (11%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLR------ 93
P++ G P+G + D+ L++AD LG VV +G ++ G+ ++
Sbjct: 64 PEVNGYGGIPIGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCAYCA 123
Query: 94 --FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL 151
+ +L I G + D + S Q + SI G+++ +V Q
Sbjct: 124 FDYEGNLWITAPAGEVAPADFTISLQEK--FGSIYCFTTDGQMI-------QVDTAFQAP 174
Query: 152 AFANGVALSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
A ++ R + +++AE ++ + + GP + V+ +PG
Sbjct: 175 AGIAVRHMNDGRPYQLIVAEQPTKKLWSYDIKGPAKIENKKVWGHIPG 222
>pdb|3U0S|A Chain A, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
pdb|3U0S|B Chain B, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
Length = 337
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 71/163 (43%), Gaps = 9/163 (5%)
Query: 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99
P++ G P+G + D+ L++AD LG VV +G ++ G+ ++
Sbjct: 77 PEVNGYGGSPIGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCAYCA 136
Query: 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158
D ++G ++ T + F S+ +K G + + T ++ + G+A
Sbjct: 137 FD-YEGNLWITAPAGEVAPADFTISLR--EKFGSIYCF-TTDGQMIQVDTAFQCPAGIAV 192
Query: 159 --LSRDRTF-ILIAETSNCRILRFWLHGPNS-GKQDVFAELPG 197
++ R + +++AE ++ + + GP + V+ +PG
Sbjct: 193 RHMNDGRPYQLIVAEQPTKKLWSYDIKGPAKIENKKVWGHIPG 235
>pdb|1V04|A Chain A, Serum Paraoxonase By Directed Evolution
pdb|3SRE|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5
pdb|3SRG|A Chain A, Serum Paraoxonase-1 By Directed Evolution At Ph 6.5 In
Complex With 2- Hydroxyquinoline
Length = 355
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 140 TTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP 199
+ +V ++ +G FANG+ +S D ++ IAE +I + H +
Sbjct: 209 SPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV 268
Query: 200 DNVRSNS-NGEFWVALH 215
DN+ + G+ WV H
Sbjct: 269 DNISVDPVTGDLWVGCH 285
>pdb|3FVZ|A Chain A, Structure Of Peptidyl-Alpha-Hydroxyglycine Alpha-Amidating
Lyase (Pal)
pdb|3FW0|A Chain A, Structure Of Peptidyl-Alpha-Hydroxyglycine Alpha-Amidating
Lyase (Pal) Bound To Alpha-Hydroxyhippuric Acid (Non-
Peptidic Substrate)
Length = 329
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 41 DIEHICGRPLGIRFDKKTGDLYIADAYLGFQVV--GPEGGLATQLVTEAAGQPLR 93
D H C +P + + TG ++++D Y ++V P G TQ E++G R
Sbjct: 138 DQNHFC-QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPR 191
>pdb|1VM6|A Chain A, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|B Chain B, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|C Chain C, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|D Chain D, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
Length = 228
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 222 GKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTL 279
G ILL S LGK++ +HSL VGG P + GE +E+ +T+
Sbjct: 149 GTAILLESALGKSV--------PIHSLRVGGVPGDHVVVFGNIGETIEIKHRAISRTV 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,627,075
Number of Sequences: 62578
Number of extensions: 406178
Number of successful extensions: 894
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 32
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)