Query 046018
Match_columns 310
No_of_seqs 154 out of 1730
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 07:57:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1520 Predicted alkaloid syn 100.0 4.1E-39 8.8E-44 272.8 22.9 306 1-307 67-375 (376)
2 PF08450 SGL: SMP-30/Gluconola 100.0 2.5E-27 5.5E-32 200.2 20.5 231 10-259 3-242 (246)
3 COG3386 Gluconolactonase [Carb 100.0 2.9E-26 6.3E-31 196.2 23.2 232 10-255 28-267 (307)
4 COG4257 Vgb Streptogramin lyas 99.8 6.1E-18 1.3E-22 137.1 20.7 261 15-307 68-346 (353)
5 KOG4499 Ca2+-binding protein R 99.8 3E-18 6.5E-23 135.8 17.2 237 10-262 18-274 (310)
6 PLN02919 haloacid dehalogenase 99.7 1.6E-14 3.4E-19 143.5 31.6 218 45-307 622-887 (1057)
7 PF08450 SGL: SMP-30/Gluconola 99.7 9.7E-15 2.1E-19 123.3 23.6 208 49-297 2-245 (246)
8 COG4257 Vgb Streptogramin lyas 99.7 7.4E-15 1.6E-19 119.4 20.6 230 45-309 60-306 (353)
9 PF03088 Str_synth: Strictosid 99.7 1.1E-15 2.4E-20 105.5 10.0 87 96-183 1-88 (89)
10 PLN02919 haloacid dehalogenase 99.6 1.2E-12 2.6E-17 130.2 27.2 159 44-219 565-763 (1057)
11 PF10282 Lactonase: Lactonase, 99.5 5.4E-12 1.2E-16 111.8 23.9 156 46-219 143-315 (345)
12 PF10282 Lactonase: Lactonase, 99.5 3.5E-11 7.5E-16 106.7 27.1 155 46-219 36-215 (345)
13 COG2706 3-carboxymuconate cycl 99.4 5.9E-10 1.3E-14 94.3 28.0 158 43-219 36-214 (346)
14 PRK11028 6-phosphogluconolacto 99.4 5.5E-10 1.2E-14 98.5 29.0 153 47-219 35-198 (330)
15 COG3386 Gluconolactonase [Carb 99.4 1.6E-10 3.5E-15 99.4 23.4 215 48-301 26-279 (307)
16 COG2706 3-carboxymuconate cycl 99.4 9.6E-11 2.1E-15 99.0 19.2 155 47-220 145-314 (346)
17 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 7.5E-09 1.6E-13 89.3 27.9 186 4-238 6-195 (300)
18 PRK11028 6-phosphogluconolacto 99.3 8.6E-09 1.9E-13 90.9 26.8 153 47-218 80-250 (330)
19 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 6.7E-08 1.4E-12 83.4 27.5 133 59-218 1-136 (300)
20 PF03022 MRJP: Major royal jel 99.2 2.3E-08 5E-13 85.9 23.9 154 48-219 2-208 (287)
21 COG3391 Uncharacterized conser 99.1 6.2E-08 1.3E-12 86.9 24.8 151 47-217 74-228 (381)
22 TIGR02604 Piru_Ver_Nterm putat 99.1 5.8E-09 1.3E-13 93.2 17.3 142 46-218 13-205 (367)
23 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.4E-06 3.1E-11 76.3 27.7 85 28-113 28-125 (352)
24 COG3391 Uncharacterized conser 99.0 7.6E-08 1.7E-12 86.4 18.9 150 47-219 116-276 (381)
25 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.9E-07 4E-12 81.8 20.1 121 103-242 11-148 (352)
26 PF01731 Arylesterase: Arylest 98.9 2.3E-08 5E-13 68.7 10.0 84 96-182 1-84 (86)
27 COG3292 Predicted periplasmic 98.9 9.3E-08 2E-12 85.8 15.2 251 21-307 136-403 (671)
28 KOG0291 WD40-repeat-containing 98.9 1.2E-06 2.6E-11 80.8 22.6 173 4-218 367-543 (893)
29 KOG1214 Nidogen and related ba 98.9 1.4E-07 3E-12 87.7 16.0 177 21-220 1041-1220(1289)
30 KOG0315 G-protein beta subunit 98.8 6.1E-07 1.3E-11 72.6 17.3 191 2-239 98-297 (311)
31 KOG1214 Nidogen and related ba 98.8 5.7E-07 1.2E-11 83.7 18.7 142 46-210 1024-1169(1289)
32 KOG2055 WD40 repeat protein [G 98.8 3.3E-06 7.1E-11 73.9 20.8 224 52-306 263-510 (514)
33 PF02239 Cytochrom_D1: Cytochr 98.7 5.7E-06 1.2E-10 73.8 22.6 135 59-217 5-148 (369)
34 PF06977 SdiA-regulated: SdiA- 98.7 3.8E-07 8.2E-12 76.2 14.1 190 11-217 26-242 (248)
35 PRK04792 tolB translocation pr 98.7 3.2E-06 6.9E-11 77.7 21.3 182 12-217 223-414 (448)
36 TIGR02604 Piru_Ver_Nterm putat 98.7 3.1E-07 6.8E-12 82.1 14.0 133 43-180 68-211 (367)
37 PF07433 DUF1513: Protein of u 98.7 4E-05 8.8E-10 65.2 25.7 158 46-219 4-185 (305)
38 PF07995 GSDH: Glucose / Sorbo 98.7 9.1E-06 2E-10 71.6 22.9 158 47-218 2-203 (331)
39 PF02239 Cytochrom_D1: Cytochr 98.7 5.1E-06 1.1E-10 74.1 20.4 161 50-237 40-209 (369)
40 PF06977 SdiA-regulated: SdiA- 98.7 1.7E-05 3.8E-10 66.3 22.3 201 44-305 19-247 (248)
41 PRK04922 tolB translocation pr 98.6 5.8E-06 1.3E-10 75.7 19.7 157 29-210 230-392 (433)
42 PRK02888 nitrous-oxide reducta 98.6 2.6E-06 5.6E-11 78.8 16.8 148 45-220 233-398 (635)
43 cd00200 WD40 WD40 domain, foun 98.6 4.6E-05 1E-09 64.1 23.1 147 47-219 94-242 (289)
44 TIGR03606 non_repeat_PQQ dehyd 98.6 6.3E-06 1.4E-10 74.6 18.0 167 42-218 25-251 (454)
45 cd00200 WD40 WD40 domain, foun 98.6 0.00027 6E-09 59.4 27.1 168 22-215 26-197 (289)
46 PRK05137 tolB translocation pr 98.6 1.8E-05 4E-10 72.5 21.0 175 12-211 207-391 (435)
47 PRK03629 tolB translocation pr 98.5 4E-05 8.6E-10 70.1 22.6 178 11-213 203-390 (429)
48 PRK04922 tolB translocation pr 98.5 0.00012 2.5E-09 67.2 25.2 141 48-212 205-351 (433)
49 PRK02889 tolB translocation pr 98.5 3.4E-05 7.4E-10 70.6 21.3 164 29-217 222-392 (427)
50 KOG1446 Histone H3 (Lys4) meth 98.5 8.2E-05 1.8E-09 62.3 21.2 163 46-241 100-273 (311)
51 PRK00178 tolB translocation pr 98.5 4E-05 8.7E-10 70.2 21.6 180 12-216 204-394 (430)
52 KOG4659 Uncharacterized conser 98.5 7.3E-06 1.6E-10 79.9 16.5 79 27-113 348-427 (1899)
53 PRK05137 tolB translocation pr 98.5 0.00021 4.6E-09 65.6 25.7 142 47-212 202-349 (435)
54 PRK03629 tolB translocation pr 98.5 0.00026 5.7E-09 64.7 25.5 141 48-212 200-346 (429)
55 TIGR03118 PEPCTERM_chp_1 conse 98.4 0.00023 5.1E-09 60.0 22.5 233 40-307 16-278 (336)
56 PF07995 GSDH: Glucose / Sorbo 98.4 1.1E-05 2.4E-10 71.0 15.8 130 46-180 48-212 (331)
57 KOG0279 G protein beta subunit 98.4 0.00041 8.8E-09 57.5 23.0 149 46-219 63-215 (315)
58 PRK04043 tolB translocation pr 98.4 0.00016 3.4E-09 65.8 23.2 180 11-216 192-388 (419)
59 KOG4659 Uncharacterized conser 98.4 1.7E-05 3.6E-10 77.5 17.2 174 21-219 446-684 (1899)
60 PF03022 MRJP: Major royal jel 98.4 4.2E-05 9.1E-10 65.8 18.3 154 47-218 61-257 (287)
61 PRK04792 tolB translocation pr 98.4 0.00026 5.7E-09 65.1 24.6 142 50-215 221-369 (448)
62 KOG0315 G-protein beta subunit 98.4 0.00034 7.3E-09 57.1 21.8 150 47-219 41-190 (311)
63 TIGR02800 propeller_TolB tol-p 98.4 7.7E-05 1.7E-09 67.9 20.7 164 29-217 216-386 (417)
64 COG3490 Uncharacterized protei 98.4 0.00031 6.8E-09 58.5 21.7 240 46-303 67-343 (366)
65 KOG0291 WD40-repeat-containing 98.4 3.2E-05 7E-10 71.8 17.4 160 50-238 439-620 (893)
66 PRK01742 tolB translocation pr 98.4 9.7E-05 2.1E-09 67.6 20.9 175 12-216 209-391 (429)
67 PRK02889 tolB translocation pr 98.4 0.00059 1.3E-08 62.5 25.3 140 49-212 198-343 (427)
68 TIGR02800 propeller_TolB tol-p 98.3 0.00057 1.2E-08 62.2 24.6 143 49-215 192-340 (417)
69 PRK04043 tolB translocation pr 98.3 0.00082 1.8E-08 61.2 23.7 137 50-212 191-334 (419)
70 COG3292 Predicted periplasmic 98.3 0.00018 3.9E-09 65.2 18.7 192 5-234 243-450 (671)
71 PRK00178 tolB translocation pr 98.2 0.0014 3E-08 60.1 25.3 141 49-212 201-346 (430)
72 TIGR03032 conserved hypothetic 98.2 6.4E-05 1.4E-09 63.7 14.1 151 48-216 104-261 (335)
73 PF05096 Glu_cyclase_2: Glutam 98.2 0.0014 3E-08 54.8 21.4 160 49-240 47-213 (264)
74 KOG1446 Histone H3 (Lys4) meth 98.2 0.0031 6.7E-08 53.1 26.7 148 45-218 13-162 (311)
75 PRK11138 outer membrane biogen 98.2 0.0013 2.9E-08 59.4 23.1 213 58-307 160-393 (394)
76 KOG0266 WD40 repeat-containing 98.2 0.00099 2.1E-08 61.5 22.4 149 47-219 204-357 (456)
77 COG4946 Uncharacterized protei 98.2 0.00079 1.7E-08 59.8 20.2 169 58-255 331-501 (668)
78 PRK01742 tolB translocation pr 98.2 0.0018 3.9E-08 59.4 23.8 140 48-214 205-350 (429)
79 PF06433 Me-amine-dh_H: Methyl 98.1 0.00049 1.1E-08 59.5 18.1 184 105-307 3-212 (342)
80 TIGR03300 assembly_YfgL outer 98.1 0.0026 5.7E-08 57.1 23.8 156 131-305 199-376 (377)
81 TIGR03606 non_repeat_PQQ dehyd 98.1 0.0003 6.4E-09 63.9 17.2 109 92-218 29-167 (454)
82 PF03088 Str_synth: Strictosid 98.1 4.2E-05 9.1E-10 53.0 8.8 68 51-140 2-87 (89)
83 KOG0282 mRNA splicing factor [ 98.1 6.3E-05 1.4E-09 66.4 11.8 176 3-219 274-455 (503)
84 KOG0318 WD40 repeat stress pro 98.1 0.0015 3.2E-08 58.7 19.9 176 2-220 335-511 (603)
85 KOG2139 WD40 repeat protein [G 98.0 0.0019 4E-08 55.6 19.7 147 49-219 198-368 (445)
86 PF05096 Glu_cyclase_2: Glutam 98.0 0.0019 4.1E-08 54.1 19.4 154 93-307 45-202 (264)
87 COG3204 Uncharacterized protei 98.0 0.00066 1.4E-08 57.0 16.5 156 46-218 128-305 (316)
88 PRK01029 tolB translocation pr 98.0 0.0062 1.3E-07 55.7 24.5 140 51-210 189-340 (428)
89 PRK01029 tolB translocation pr 98.0 0.0052 1.1E-07 56.3 23.8 159 29-210 213-384 (428)
90 PTZ00421 coronin; Provisional 98.0 0.003 6.5E-08 58.7 22.0 146 47-215 126-278 (493)
91 KOG1520 Predicted alkaloid syn 98.0 0.00027 5.8E-09 61.5 14.0 103 94-218 116-240 (376)
92 TIGR03300 assembly_YfgL outer 98.0 0.0059 1.3E-07 54.9 23.6 217 52-307 101-337 (377)
93 KOG0279 G protein beta subunit 98.0 0.0028 6.1E-08 52.6 19.0 175 2-218 78-254 (315)
94 PRK11138 outer membrane biogen 98.0 0.0037 8.1E-08 56.6 22.1 217 51-307 115-352 (394)
95 KOG0278 Serine/threonine kinas 98.0 0.00039 8.5E-09 56.8 13.6 145 13-182 150-297 (334)
96 KOG0266 WD40 repeat-containing 98.0 0.0014 3E-08 60.5 19.3 113 47-183 247-365 (456)
97 PF08662 eIF2A: Eukaryotic tra 97.9 0.0015 3.2E-08 53.0 17.0 119 70-215 41-162 (194)
98 PF07433 DUF1513: Protein of u 97.9 0.0017 3.7E-08 55.5 17.0 165 94-297 6-181 (305)
99 PF13360 PQQ_2: PQQ-like domai 97.9 0.0069 1.5E-07 50.4 20.9 204 70-307 5-229 (238)
100 COG3204 Uncharacterized protei 97.9 0.0066 1.4E-07 51.1 19.7 112 47-180 86-210 (316)
101 KOG4499 Ca2+-binding protein R 97.8 0.0015 3.1E-08 53.2 14.6 144 47-217 109-276 (310)
102 KOG0289 mRNA splicing factor [ 97.8 0.013 2.7E-07 51.8 21.2 143 47-214 304-450 (506)
103 PF08662 eIF2A: Eukaryotic tra 97.8 0.002 4.3E-08 52.2 15.8 115 47-184 60-181 (194)
104 KOG0286 G-protein beta subunit 97.8 0.012 2.6E-07 49.4 20.1 157 51-237 150-310 (343)
105 PF05787 DUF839: Bacterial pro 97.8 0.00046 1E-08 64.2 13.2 119 45-169 348-519 (524)
106 KOG0278 Serine/threonine kinas 97.7 0.0042 9.1E-08 50.9 16.0 178 14-219 108-290 (334)
107 KOG1407 WD40 repeat protein [F 97.7 0.0078 1.7E-07 49.7 17.6 159 50-241 110-272 (313)
108 KOG0272 U4/U6 small nuclear ri 97.7 0.0017 3.8E-08 56.7 14.7 150 41-219 256-411 (459)
109 KOG0263 Transcription initiati 97.7 0.0014 3E-08 61.4 14.9 173 2-220 466-643 (707)
110 KOG0293 WD40 repeat-containing 97.7 0.0029 6.4E-08 55.3 15.7 148 47-219 270-418 (519)
111 PF14583 Pectate_lyase22: Olig 97.7 0.03 6.5E-07 49.6 23.1 119 29-150 62-186 (386)
112 KOG0271 Notchless-like WD40 re 97.7 0.028 6.1E-07 48.9 21.5 110 49-182 160-276 (480)
113 KOG0639 Transducin-like enhanc 97.7 0.0017 3.8E-08 58.0 14.3 143 51-218 424-574 (705)
114 KOG1407 WD40 repeat protein [F 97.7 0.011 2.4E-07 48.8 17.8 148 47-219 21-170 (313)
115 KOG0285 Pleiotropic regulator 97.7 0.0065 1.4E-07 52.2 17.1 199 8-238 151-356 (460)
116 PTZ00420 coronin; Provisional 97.7 0.05 1.1E-06 51.3 26.1 120 94-239 76-206 (568)
117 PF13360 PQQ_2: PQQ-like domai 97.7 0.023 4.9E-07 47.3 22.2 146 58-235 76-235 (238)
118 PF01436 NHL: NHL repeat; Int 97.6 9.5E-05 2.1E-09 39.4 3.7 27 152-179 2-28 (28)
119 PRK02888 nitrous-oxide reducta 97.6 0.012 2.6E-07 55.2 19.6 105 60-170 143-253 (635)
120 KOG2106 Uncharacterized conser 97.6 0.0084 1.8E-07 53.8 17.7 143 48-219 370-514 (626)
121 PLN00181 protein SPA1-RELATED; 97.6 0.075 1.6E-06 52.8 26.6 148 47-219 576-731 (793)
122 KOG0273 Beta-transducin family 97.6 0.041 8.9E-07 49.1 21.1 145 47-219 236-382 (524)
123 COG2133 Glucose/sorbosone dehy 97.6 0.032 6.8E-07 49.9 20.5 126 46-176 130-263 (399)
124 PTZ00420 coronin; Provisional 97.6 0.049 1.1E-06 51.4 22.8 147 47-219 126-286 (568)
125 KOG1036 Mitotic spindle checkp 97.6 0.031 6.8E-07 47.2 18.9 112 47-183 14-125 (323)
126 KOG0316 Conserved WD40 repeat- 97.5 0.026 5.6E-07 46.0 17.7 155 49-238 62-221 (307)
127 PTZ00421 coronin; Provisional 97.5 0.022 4.8E-07 53.0 20.1 120 94-238 77-206 (493)
128 PF13449 Phytase-like: Esteras 97.5 0.0082 1.8E-07 52.9 16.5 159 45-216 18-234 (326)
129 KOG0271 Notchless-like WD40 re 97.5 0.00088 1.9E-08 57.9 9.5 155 49-238 118-284 (480)
130 PLN00181 protein SPA1-RELATED; 97.5 0.13 2.7E-06 51.2 29.6 113 48-183 534-649 (793)
131 cd00216 PQQ_DH Dehydrogenases 97.5 0.085 1.8E-06 49.2 25.2 190 97-299 221-458 (488)
132 COG3211 PhoX Predicted phospha 97.5 0.0013 2.9E-08 59.9 11.0 119 46-171 416-573 (616)
133 KOG0294 WD40 repeat-containing 97.4 0.054 1.2E-06 46.0 19.0 164 27-217 63-229 (362)
134 KOG0286 G-protein beta subunit 97.4 0.056 1.2E-06 45.5 22.9 146 49-219 100-252 (343)
135 KOG1539 WD repeat protein [Gen 97.4 0.0063 1.4E-07 57.7 14.4 144 47-218 494-639 (910)
136 KOG1273 WD40 repeat protein [G 97.4 0.051 1.1E-06 46.2 18.3 146 51-215 111-268 (405)
137 KOG0645 WD40 repeat protein [G 97.4 0.06 1.3E-06 44.8 19.0 179 2-219 30-218 (312)
138 KOG0639 Transducin-like enhanc 97.4 0.0043 9.2E-08 55.6 12.4 170 21-218 481-655 (705)
139 cd00216 PQQ_DH Dehydrogenases 97.4 0.13 2.8E-06 48.1 26.1 83 51-146 104-189 (488)
140 KOG2048 WD40 repeat protein [G 97.4 0.058 1.3E-06 50.2 19.9 148 47-217 26-176 (691)
141 KOG4378 Nuclear protein COP1 [ 97.4 0.0082 1.8E-07 53.8 14.0 149 47-220 122-274 (673)
142 KOG0318 WD40 repeat stress pro 97.4 0.11 2.4E-06 47.1 24.3 144 48-218 282-427 (603)
143 KOG2106 Uncharacterized conser 97.4 0.11 2.3E-06 47.0 24.7 146 50-218 204-350 (626)
144 KOG0316 Conserved WD40 repeat- 97.3 0.038 8.1E-07 45.1 16.4 146 47-218 18-165 (307)
145 smart00135 LY Low-density lipo 97.3 0.00097 2.1E-08 39.2 5.9 37 148-184 5-41 (43)
146 COG0823 TolB Periplasmic compo 97.3 0.013 2.9E-07 53.3 15.7 150 13-182 199-358 (425)
147 KOG1274 WD40 repeat protein [G 97.3 0.072 1.6E-06 51.3 20.7 113 47-184 57-170 (933)
148 KOG0772 Uncharacterized conser 97.3 0.024 5.1E-07 51.2 16.5 172 53-244 275-459 (641)
149 KOG0263 Transcription initiati 97.3 0.019 4.1E-07 54.1 16.2 162 47-238 452-615 (707)
150 KOG0282 mRNA splicing factor [ 97.3 0.011 2.3E-07 52.8 13.8 146 49-219 261-408 (503)
151 COG4946 Uncharacterized protei 97.3 0.0075 1.6E-07 53.8 12.8 123 29-170 384-507 (668)
152 COG2133 Glucose/sorbosone dehy 97.3 0.019 4.1E-07 51.3 15.4 162 51-218 181-388 (399)
153 KOG0272 U4/U6 small nuclear ri 97.3 0.028 6E-07 49.4 15.9 151 43-219 214-368 (459)
154 KOG0649 WD40 repeat protein [G 97.3 0.04 8.7E-07 45.2 15.8 159 47-240 115-283 (325)
155 KOG0285 Pleiotropic regulator 97.2 0.082 1.8E-06 45.8 18.2 113 47-184 152-267 (460)
156 KOG1274 WD40 repeat protein [G 97.2 0.035 7.6E-07 53.4 17.4 145 50-219 100-255 (933)
157 KOG0310 Conserved WD40 repeat- 97.2 0.066 1.4E-06 47.9 17.8 175 48-254 70-250 (487)
158 KOG0289 mRNA splicing factor [ 97.2 0.091 2E-06 46.6 18.3 100 95-218 306-411 (506)
159 KOG0283 WD40 repeat-containing 97.1 0.065 1.4E-06 50.9 18.0 176 2-220 383-570 (712)
160 KOG0293 WD40 repeat-containing 97.1 0.013 2.9E-07 51.3 12.5 113 47-183 313-426 (519)
161 COG3490 Uncharacterized protei 97.1 0.052 1.1E-06 45.7 15.4 142 134-297 93-244 (366)
162 KOG2096 WD40 repeat protein [G 97.1 0.14 3.1E-06 43.7 20.4 132 47-182 87-258 (420)
163 KOG0296 Angio-associated migra 97.1 0.16 3.5E-06 44.0 19.4 161 48-239 66-229 (399)
164 PF06433 Me-amine-dh_H: Methyl 97.1 0.17 3.7E-06 44.1 26.1 225 51-277 40-323 (342)
165 PF13449 Phytase-like: Esteras 97.1 0.055 1.2E-06 47.7 16.5 131 48-182 86-251 (326)
166 KOG0292 Vesicle coat complex C 97.1 0.19 4.1E-06 48.7 20.3 117 43-183 48-166 (1202)
167 KOG1273 WD40 repeat protein [G 97.1 0.056 1.2E-06 46.0 15.2 191 49-272 26-224 (405)
168 KOG1539 WD repeat protein [Gen 97.0 0.14 3.1E-06 48.9 19.1 186 47-272 449-636 (910)
169 KOG0646 WD40 repeat protein [G 97.0 0.18 3.9E-06 45.0 18.4 141 49-218 84-240 (476)
170 KOG2055 WD40 repeat protein [G 97.0 0.019 4.1E-07 51.0 12.4 149 44-218 342-504 (514)
171 TIGR03032 conserved hypothetic 97.0 0.033 7.1E-07 47.7 13.2 94 48-170 153-259 (335)
172 KOG0640 mRNA cleavage stimulat 96.9 0.033 7.1E-07 47.2 12.8 102 94-219 174-284 (430)
173 KOG0288 WD40 repeat protein Ti 96.9 0.022 4.8E-07 49.9 11.8 107 46-170 341-450 (459)
174 PF01436 NHL: NHL repeat; Int 96.9 0.0025 5.5E-08 33.8 4.0 26 47-73 2-28 (28)
175 KOG0772 Uncharacterized conser 96.9 0.34 7.4E-06 44.1 21.2 153 48-218 216-386 (641)
176 PF05694 SBP56: 56kDa selenium 96.8 0.12 2.7E-06 46.4 16.2 166 47-215 130-393 (461)
177 KOG0643 Translation initiation 96.8 0.048 1E-06 45.3 12.6 151 10-182 54-220 (327)
178 KOG1538 Uncharacterized conser 96.8 0.33 7.2E-06 45.6 19.0 164 47-237 13-217 (1081)
179 PF00930 DPPIV_N: Dipeptidyl p 96.8 0.22 4.8E-06 44.4 18.0 150 48-218 185-349 (353)
180 KOG0303 Actin-binding protein 96.7 0.058 1.3E-06 47.2 13.2 144 2-183 147-295 (472)
181 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.7 0.4 8.8E-06 45.2 19.9 80 50-146 114-195 (527)
182 KOG2048 WD40 repeat protein [G 96.7 0.56 1.2E-05 44.0 22.3 176 46-251 69-254 (691)
183 KOG0275 Conserved WD40 repeat- 96.7 0.024 5.2E-07 48.2 10.3 151 47-219 214-371 (508)
184 KOG0296 Angio-associated migra 96.7 0.37 8.1E-06 41.9 23.5 114 47-184 107-222 (399)
185 PF05787 DUF839: Bacterial pro 96.7 0.073 1.6E-06 49.9 14.5 82 90-172 347-455 (524)
186 PHA02713 hypothetical protein; 96.6 0.66 1.4E-05 44.1 21.5 93 58-170 303-405 (557)
187 PF02333 Phytase: Phytase; In 96.6 0.47 1E-05 42.3 18.6 155 51-230 58-236 (381)
188 KOG0646 WD40 repeat protein [G 96.5 0.22 4.8E-06 44.5 15.7 110 50-183 178-308 (476)
189 KOG0284 Polyadenylation factor 96.5 0.043 9.3E-07 48.1 10.8 180 10-218 100-286 (464)
190 KOG2110 Uncharacterized conser 96.4 0.2 4.4E-06 43.5 14.4 132 28-182 107-248 (391)
191 TIGR02276 beta_rpt_yvtn 40-res 96.4 0.022 4.7E-07 33.2 6.4 42 102-160 1-42 (42)
192 KOG0643 Translation initiation 96.4 0.47 1E-05 39.7 21.5 148 47-218 53-212 (327)
193 COG3823 Glutamine cyclotransfe 96.4 0.041 8.9E-07 44.2 9.3 103 47-170 131-247 (262)
194 KOG0294 WD40 repeat-containing 96.4 0.54 1.2E-05 40.2 20.1 139 47-218 44-190 (362)
195 PF02333 Phytase: Phytase; In 96.3 0.43 9.3E-06 42.6 16.3 173 27-219 78-283 (381)
196 KOG0275 Conserved WD40 repeat- 96.3 0.095 2.1E-06 44.7 11.7 114 47-184 307-425 (508)
197 KOG2919 Guanine nucleotide-bin 96.3 0.11 2.3E-06 44.5 12.0 140 58-218 122-273 (406)
198 PF14870 PSII_BNR: Photosynthe 96.3 0.65 1.4E-05 40.3 17.6 168 21-218 75-254 (302)
199 COG0823 TolB Periplasmic compo 96.3 0.13 2.9E-06 46.9 13.5 123 70-215 220-344 (425)
200 PRK13616 lipoprotein LpqB; Pro 96.3 1 2.3E-05 43.0 19.8 113 95-217 399-517 (591)
201 KOG2111 Uncharacterized conser 96.2 0.59 1.3E-05 40.0 15.5 71 94-183 183-257 (346)
202 KOG0301 Phospholipase A2-activ 96.1 0.79 1.7E-05 43.2 17.2 209 58-306 71-286 (745)
203 KOG0973 Histone transcription 96.1 0.73 1.6E-05 45.4 17.7 104 153-271 131-237 (942)
204 KOG2139 WD40 repeat protein [G 96.1 0.81 1.8E-05 39.9 16.0 106 93-218 196-303 (445)
205 KOG0299 U3 snoRNP-associated p 96.0 0.35 7.6E-06 43.2 14.1 104 94-218 329-448 (479)
206 TIGR02276 beta_rpt_yvtn 40-res 96.0 0.039 8.4E-07 32.1 6.0 42 161-205 1-42 (42)
207 PHA02713 hypothetical protein; 96.0 0.5 1.1E-05 44.9 16.4 148 58-215 351-520 (557)
208 KOG0319 WD40-repeat-containing 96.0 0.89 1.9E-05 43.2 17.2 136 52-211 25-162 (775)
209 PF14583 Pectate_lyase22: Olig 95.9 0.12 2.6E-06 45.9 10.9 104 94-216 37-144 (386)
210 KOG4441 Proteins containing BT 95.9 0.51 1.1E-05 44.9 15.9 170 9-218 349-533 (571)
211 KOG0283 WD40 repeat-containing 95.9 0.58 1.3E-05 44.7 15.8 110 50-184 373-483 (712)
212 KOG0306 WD40-repeat-containing 95.9 0.33 7.2E-06 46.1 14.0 149 43-219 505-657 (888)
213 COG3211 PhoX Predicted phospha 95.9 0.12 2.5E-06 47.7 10.9 68 151-218 416-521 (616)
214 KOG0310 Conserved WD40 repeat- 95.8 1.4 3E-05 39.9 19.8 164 47-241 111-279 (487)
215 KOG1538 Uncharacterized conser 95.8 0.45 9.7E-06 44.8 14.3 125 92-241 12-172 (1081)
216 KOG4649 PQQ (pyrrolo-quinoline 95.8 0.94 2E-05 37.9 18.3 132 58-218 23-158 (354)
217 KOG0973 Histone transcription 95.8 0.54 1.2E-05 46.3 15.6 103 94-215 131-238 (942)
218 KOG0306 WD40-repeat-containing 95.7 2 4.4E-05 41.1 18.9 146 46-219 412-573 (888)
219 KOG0645 WD40 repeat protein [G 95.7 1.1 2.3E-05 37.7 25.5 149 47-219 15-173 (312)
220 KOG0308 Conserved WD40 repeat- 95.6 0.7 1.5E-05 43.3 14.8 182 4-218 135-320 (735)
221 KOG0273 Beta-transducin family 95.6 1.7 3.6E-05 39.3 16.6 82 131-218 431-515 (524)
222 KOG0641 WD40 repeat protein [G 95.6 1 2.2E-05 36.7 19.0 66 47-114 33-110 (350)
223 COG5276 Uncharacterized conser 95.5 1.4 2.9E-05 37.7 18.3 133 58-218 96-234 (370)
224 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 2.3 4.9E-05 40.2 19.5 82 130-217 439-524 (527)
225 COG1520 FOG: WD40-like repeat 95.5 0.59 1.3E-05 41.9 14.2 107 54-184 65-173 (370)
226 KOG4328 WD40 protein [Function 95.5 1.8 3.9E-05 38.9 16.5 149 49-218 237-392 (498)
227 KOG2110 Uncharacterized conser 95.4 1.1 2.3E-05 39.2 14.5 145 51-219 92-241 (391)
228 COG1520 FOG: WD40-like repeat 95.4 1.9 4.2E-05 38.6 24.1 103 58-184 111-219 (370)
229 KOG0301 Phospholipase A2-activ 95.4 0.99 2.2E-05 42.6 15.0 138 49-218 143-281 (745)
230 PRK13684 Ycf48-like protein; P 95.4 1.8 4E-05 38.2 20.6 99 94-217 174-280 (334)
231 KOG0264 Nucleosome remodeling 95.4 0.26 5.7E-06 43.8 10.8 114 48-182 229-347 (422)
232 PHA02790 Kelch-like protein; P 95.3 1.8 3.8E-05 40.4 17.2 130 58-215 318-454 (480)
233 KOG0303 Actin-binding protein 95.3 1.9 4.1E-05 38.1 19.8 84 130-215 152-235 (472)
234 KOG4649 PQQ (pyrrolo-quinoline 95.3 1.5 3.3E-05 36.7 21.2 70 54-146 101-171 (354)
235 KOG4441 Proteins containing BT 95.2 3 6.5E-05 39.8 20.2 144 49-215 325-483 (571)
236 COG3823 Glutamine cyclotransfe 95.2 1.4 2.9E-05 35.8 17.4 108 50-183 49-159 (262)
237 KOG0319 WD40-repeat-containing 95.2 2.5 5.5E-05 40.3 17.1 189 46-262 147-344 (775)
238 KOG1036 Mitotic spindle checkp 95.1 1.9 4.1E-05 36.8 15.5 105 51-183 59-164 (323)
239 PRK13684 Ycf48-like protein; P 95.0 2.3 5.1E-05 37.5 18.0 142 47-218 173-324 (334)
240 KOG0307 Vesicle coat complex C 95.0 0.13 2.9E-06 50.7 8.8 172 46-241 116-295 (1049)
241 KOG0284 Polyadenylation factor 95.0 0.91 2E-05 40.2 12.9 105 93-219 97-203 (464)
242 PHA03098 kelch-like protein; P 95.0 2.5 5.3E-05 40.0 17.3 109 58-183 342-465 (534)
243 PF14339 DUF4394: Domain of un 94.9 1.2 2.6E-05 36.9 12.8 115 47-179 27-160 (236)
244 COG4247 Phy 3-phytase (myo-ino 94.9 2 4.3E-05 35.9 13.9 140 25-182 75-234 (364)
245 KOG0268 Sof1-like rRNA process 94.8 2.5 5.4E-05 37.0 18.9 167 2-219 82-252 (433)
246 KOG0288 WD40 repeat protein Ti 94.8 0.92 2E-05 40.2 12.5 127 61-214 314-449 (459)
247 KOG1009 Chromatin assembly com 94.7 0.51 1.1E-05 41.6 10.6 98 47-164 66-178 (434)
248 PF14517 Tachylectin: Tachylec 94.6 0.31 6.6E-06 40.1 8.7 139 51-216 38-197 (229)
249 KOG0265 U5 snRNP-specific prot 94.6 2.6 5.6E-05 36.0 20.8 170 3-216 63-236 (338)
250 PLN00033 photosystem II stabil 94.5 3.1 6.6E-05 37.8 15.8 142 50-218 242-392 (398)
251 PF07494 Reg_prop: Two compone 94.5 0.04 8.7E-07 27.9 2.2 17 199-215 7-23 (24)
252 KOG2315 Predicted translation 94.5 4 8.7E-05 37.7 17.2 121 131-272 250-373 (566)
253 PF05694 SBP56: 56kDa selenium 94.4 0.12 2.6E-06 46.4 6.5 61 94-171 313-393 (461)
254 PF14870 PSII_BNR: Photosynthe 94.3 3.2 6.9E-05 36.1 15.1 142 47-216 145-295 (302)
255 PF00058 Ldl_recept_b: Low-den 94.3 0.18 3.8E-06 29.6 5.0 40 165-206 2-42 (42)
256 KOG0299 U3 snoRNP-associated p 94.3 3.9 8.4E-05 36.9 17.1 150 10-183 204-357 (479)
257 PHA02790 Kelch-like protein; P 94.3 1.7 3.6E-05 40.6 14.0 97 58-182 362-470 (480)
258 PF02897 Peptidase_S9_N: Proly 94.2 4.2 9.2E-05 37.0 18.3 121 50-183 127-261 (414)
259 KOG2919 Guanine nucleotide-bin 94.2 1.3 2.7E-05 38.2 11.6 149 48-218 160-319 (406)
260 KOG2321 WD40 repeat protein [G 94.1 0.64 1.4E-05 43.0 10.3 87 131-218 154-251 (703)
261 KOG4328 WD40 protein [Function 94.0 3.9 8.4E-05 36.9 14.6 166 50-241 283-461 (498)
262 KOG0647 mRNA export protein (c 93.9 2.8 6.2E-05 35.8 13.0 63 153-216 29-93 (347)
263 TIGR03074 PQQ_membr_DH membran 93.9 7.3 0.00016 38.6 23.5 23 58-80 194-216 (764)
264 KOG1408 WD40 repeat protein [F 93.8 0.79 1.7E-05 43.6 10.6 114 48-182 598-713 (1080)
265 KOG2096 WD40 repeat protein [G 93.8 4 8.6E-05 35.3 14.4 125 94-241 88-227 (420)
266 KOG3881 Uncharacterized conser 93.8 4.3 9.3E-05 35.9 14.3 87 130-218 224-312 (412)
267 PLN00033 photosystem II stabil 93.8 3.6 7.8E-05 37.3 14.6 111 47-179 281-396 (398)
268 KOG0292 Vesicle coat complex C 93.7 7.8 0.00017 38.3 22.4 86 131-220 229-316 (1202)
269 PRK13616 lipoprotein LpqB; Pro 93.7 4.9 0.00011 38.5 16.1 71 94-184 449-529 (591)
270 KOG0268 Sof1-like rRNA process 93.7 1 2.2E-05 39.4 10.2 86 131-218 209-294 (433)
271 PF00058 Ldl_recept_b: Low-den 93.7 0.37 7.9E-06 28.2 5.6 39 106-161 2-42 (42)
272 KOG0771 Prolactin regulatory e 93.6 3.7 8.1E-05 36.4 13.8 150 47-218 187-346 (398)
273 KOG0295 WD40 repeat-containing 93.6 4.7 0.0001 35.3 15.2 138 51-218 113-257 (406)
274 KOG2394 WD40 protein DMR-N9 [G 93.5 1 2.3E-05 41.3 10.5 78 152-237 291-369 (636)
275 KOG1963 WD40 repeat protein [G 93.5 7.9 0.00017 37.7 17.2 148 49-220 163-316 (792)
276 TIGR03118 PEPCTERM_chp_1 conse 93.3 3.4 7.4E-05 35.6 12.7 65 148-213 19-93 (336)
277 smart00135 LY Low-density lipo 93.3 0.31 6.7E-06 28.1 4.9 34 91-141 7-40 (43)
278 KOG0640 mRNA cleavage stimulat 93.3 0.99 2.1E-05 38.6 9.4 111 50-182 220-335 (430)
279 KOG0265 U5 snRNP-specific prot 93.2 4.9 0.00011 34.4 14.1 88 153-249 49-139 (338)
280 PF00930 DPPIV_N: Dipeptidyl p 93.1 1 2.2E-05 40.2 10.1 86 70-179 25-128 (353)
281 PF08553 VID27: VID27 cytoplas 93.0 0.59 1.3E-05 45.8 8.9 100 60-181 544-646 (794)
282 KOG2321 WD40 repeat protein [G 93.0 1.4 3E-05 40.9 10.5 111 47-179 229-340 (703)
283 PF01731 Arylesterase: Arylest 93.0 0.69 1.5E-05 31.9 6.8 38 69-113 37-74 (86)
284 PHA03098 kelch-like protein; P 93.0 4.5 9.9E-05 38.2 14.8 109 58-183 389-512 (534)
285 KOG1215 Low-density lipoprotei 92.8 5.2 0.00011 40.5 15.7 148 47-217 480-630 (877)
286 KOG4497 Uncharacterized conser 92.8 2.4 5.1E-05 36.7 11.1 81 130-214 69-151 (447)
287 KOG0647 mRNA export protein (c 92.8 5.6 0.00012 34.0 13.6 139 4-184 45-186 (347)
288 KOG1963 WD40 repeat protein [G 92.7 4.7 0.0001 39.1 14.0 69 94-182 253-322 (792)
289 PF07494 Reg_prop: Two compone 92.7 0.17 3.7E-06 25.6 2.7 20 91-111 3-22 (24)
290 KOG2315 Predicted translation 92.7 3.7 8E-05 38.0 12.7 113 47-183 271-391 (566)
291 KOG0281 Beta-TrCP (transducin 92.6 4.3 9.4E-05 35.4 12.4 160 52-249 241-407 (499)
292 KOG0308 Conserved WD40 repeat- 92.3 6.1 0.00013 37.4 13.8 117 47-182 118-243 (735)
293 PF14269 Arylsulfotran_2: Aryl 92.3 4.3 9.2E-05 35.3 12.5 37 94-148 145-181 (299)
294 KOG3881 Uncharacterized conser 92.2 4 8.6E-05 36.1 11.9 111 51-183 207-321 (412)
295 KOG0270 WD40 repeat-containing 92.2 8.4 0.00018 34.7 15.3 53 130-182 264-317 (463)
296 KOG4378 Nuclear protein COP1 [ 92.0 2.4 5.2E-05 38.7 10.6 70 95-184 211-282 (673)
297 PF14517 Tachylectin: Tachylec 92.0 1.4 3E-05 36.4 8.5 110 51-182 85-206 (229)
298 KOG2394 WD40 protein DMR-N9 [G 91.4 0.64 1.4E-05 42.6 6.5 70 94-182 292-362 (636)
299 KOG0269 WD40 repeat-containing 91.3 7.3 0.00016 37.6 13.4 119 44-184 131-252 (839)
300 KOG1310 WD40 repeat protein [G 91.3 12 0.00027 34.8 16.7 122 41-183 45-179 (758)
301 PF14269 Arylsulfotran_2: Aryl 90.8 10 0.00023 32.9 13.9 34 47-81 144-178 (299)
302 KOG0313 Microtubule binding pr 90.2 4.4 9.5E-05 35.7 10.2 112 48-183 262-377 (423)
303 TIGR03548 mutarot_permut cycli 90.1 12 0.00027 32.7 16.9 74 58-148 123-202 (323)
304 KOG4547 WD40 repeat-containing 90.1 16 0.00035 34.0 18.2 100 58-181 114-219 (541)
305 PF08553 VID27: VID27 cytoplas 90.0 6.5 0.00014 38.8 12.3 144 49-218 483-640 (794)
306 KOG0322 G-protein beta subunit 89.6 3.9 8.5E-05 34.3 9.1 69 94-181 253-322 (323)
307 KOG0641 WD40 repeat protein [G 89.5 11 0.00023 31.0 14.6 108 58-184 193-305 (350)
308 PF06739 SBBP: Beta-propeller 89.4 0.45 9.8E-06 27.1 2.6 21 198-218 14-34 (38)
309 PF02897 Peptidase_S9_N: Proly 89.3 17 0.00036 33.1 19.9 130 70-213 95-243 (414)
310 KOG0771 Prolactin regulatory e 89.3 12 0.00027 33.3 12.4 144 50-218 148-304 (398)
311 KOG0264 Nucleosome remodeling 89.2 8 0.00017 34.7 11.2 115 51-183 182-304 (422)
312 KOG0305 Anaphase promoting com 88.8 12 0.00027 34.7 12.6 134 58-218 188-323 (484)
313 KOG1009 Chromatin assembly com 88.5 5.2 0.00011 35.5 9.5 99 93-212 66-181 (434)
314 KOG0295 WD40 repeat-containing 88.5 17 0.00036 32.1 17.4 124 69-219 216-357 (406)
315 KOG1272 WD40-repeat-containing 88.4 2.2 4.8E-05 38.5 7.3 183 92-305 129-319 (545)
316 KOG1445 Tumor-specific antigen 88.2 6.3 0.00014 37.3 10.3 119 47-182 721-844 (1012)
317 KOG1517 Guanine nucleotide bin 88.2 27 0.00059 35.4 14.9 203 2-238 1126-1340(1387)
318 KOG0650 WD40 repeat nucleolar 87.8 25 0.00054 33.2 16.7 71 94-182 402-472 (733)
319 KOG0321 WD40 repeat-containing 87.5 11 0.00024 35.6 11.4 107 58-182 64-175 (720)
320 PF10647 Gmad1: Lipoprotein Lp 87.4 16 0.00036 30.8 15.4 120 47-184 66-199 (253)
321 KOG4227 WD40 repeat protein [G 87.0 22 0.00047 31.7 12.4 145 44-208 54-206 (609)
322 KOG0302 Ribosome Assembly prot 87.0 21 0.00046 31.6 12.3 117 45-182 256-378 (440)
323 KOG0649 WD40 repeat protein [G 87.0 17 0.00036 30.4 14.2 115 47-183 157-275 (325)
324 COG4247 Phy 3-phytase (myo-ino 86.9 17 0.00038 30.5 20.5 85 133-218 127-227 (364)
325 smart00284 OLF Olfactomedin-li 86.8 18 0.00039 30.5 12.3 109 51-181 132-251 (255)
326 KOG3914 WD repeat protein WDR4 86.7 16 0.00034 32.5 11.4 112 48-182 64-181 (390)
327 KOG2111 Uncharacterized conser 86.5 21 0.00045 31.0 14.8 121 95-240 97-222 (346)
328 PF00400 WD40: WD domain, G-be 85.9 4.3 9.2E-05 22.5 5.7 30 150-180 10-39 (39)
329 KOG0918 Selenium-binding prote 85.7 5.4 0.00012 35.6 8.1 20 152-171 389-408 (476)
330 KOG4227 WD40 repeat protein [G 85.7 26 0.00056 31.3 18.0 151 49-219 108-267 (609)
331 KOG4497 Uncharacterized conser 85.4 24 0.00053 30.8 11.6 105 47-172 49-154 (447)
332 KOG3914 WD repeat protein WDR4 85.3 8.1 0.00017 34.3 8.9 116 45-184 106-225 (390)
333 KOG0269 WD40 repeat-containing 84.6 19 0.00042 34.9 11.7 145 2-184 149-298 (839)
334 KOG0281 Beta-TrCP (transducin 83.9 9.1 0.0002 33.5 8.5 83 131-218 339-421 (499)
335 KOG0302 Ribosome Assembly prot 83.6 23 0.00049 31.5 10.8 57 128-184 230-290 (440)
336 COG5276 Uncharacterized conser 83.5 28 0.00061 30.0 16.2 164 26-218 105-278 (370)
337 KOG4283 Transcription-coupled 82.9 30 0.00065 29.8 13.1 88 130-218 166-269 (397)
338 KOG0274 Cdc4 and related F-box 82.7 45 0.00097 31.7 21.7 158 27-217 228-392 (537)
339 PF04762 IKI3: IKI3 family; I 82.6 61 0.0013 33.2 23.0 115 48-181 23-149 (928)
340 KOG0270 WD40 repeat-containing 81.6 41 0.00089 30.5 17.5 153 43-218 283-440 (463)
341 KOG0276 Vesicle coat complex C 81.2 52 0.0011 31.4 18.5 52 2-69 112-163 (794)
342 PF11768 DUF3312: Protein of u 81.1 11 0.00023 35.3 8.5 69 94-182 261-329 (545)
343 PF07250 Glyoxal_oxid_N: Glyox 80.9 32 0.0007 28.9 12.9 145 70-239 48-206 (243)
344 KOG0307 Vesicle coat complex C 80.8 9.7 0.00021 38.3 8.5 107 94-220 118-232 (1049)
345 KOG1517 Guanine nucleotide bin 80.7 56 0.0012 33.4 13.4 150 47-217 1209-1372(1387)
346 KOG0274 Cdc4 and related F-box 80.3 55 0.0012 31.1 17.5 135 69-240 312-451 (537)
347 KOG1230 Protein containing rep 80.2 38 0.00083 30.6 11.1 109 48-168 123-248 (521)
348 PLN02153 epithiospecifier prot 79.9 42 0.00091 29.6 16.4 117 58-183 85-226 (341)
349 KOG1188 WD40 repeat protein [G 79.3 43 0.00094 29.4 11.7 83 131-214 49-135 (376)
350 KOG1445 Tumor-specific antigen 78.6 7 0.00015 37.0 6.5 52 131-183 699-751 (1012)
351 PF07676 PD40: WD40-like Beta 78.6 7.8 0.00017 21.7 4.6 21 153-173 10-30 (39)
352 KOG1034 Transcriptional repres 78.2 46 0.001 29.1 11.0 103 58-182 103-211 (385)
353 KOG0300 WD40 repeat-containing 78.1 46 0.00099 29.0 12.6 119 94-240 316-437 (481)
354 KOG0322 G-protein beta subunit 77.6 8.9 0.00019 32.3 6.2 81 134-217 231-314 (323)
355 KOG2395 Protein involved in va 77.4 13 0.00029 34.5 7.8 99 62-181 398-499 (644)
356 KOG1408 WD40 repeat protein [F 77.2 76 0.0016 31.0 14.9 71 93-183 597-672 (1080)
357 TIGR03074 PQQ_membr_DH membran 77.0 83 0.0018 31.4 18.3 83 97-183 379-478 (764)
358 KOG1272 WD40-repeat-containing 75.6 11 0.00023 34.4 6.6 84 128-215 269-353 (545)
359 KOG3621 WD40 repeat-containing 75.2 9.4 0.0002 36.5 6.4 88 130-218 53-147 (726)
360 KOG1215 Low-density lipoprotei 74.9 53 0.0011 33.4 12.3 149 11-181 486-638 (877)
361 KOG4283 Transcription-coupled 74.7 56 0.0012 28.2 10.7 75 2-80 204-280 (397)
362 KOG0650 WD40 repeat nucleolar 73.9 21 0.00046 33.7 8.1 69 94-182 568-637 (733)
363 TIGR03548 mutarot_permut cycli 73.1 63 0.0014 28.2 15.6 112 58-183 72-195 (323)
364 KOG0918 Selenium-binding prote 72.0 12 0.00025 33.6 5.9 29 155-183 315-343 (476)
365 smart00564 PQQ beta-propeller 71.7 8.9 0.00019 20.4 3.5 23 58-80 6-28 (33)
366 TIGR03547 muta_rot_YjhT mutatr 71.5 72 0.0016 28.1 13.9 102 58-170 17-125 (346)
367 KOG0276 Vesicle coat complex C 71.4 99 0.0021 29.7 19.4 41 68-113 77-117 (794)
368 COG1770 PtrB Protease II [Amin 70.4 1.1E+02 0.0023 29.7 17.0 76 93-183 129-209 (682)
369 KOG4547 WD40 repeat-containing 70.3 44 0.00095 31.3 9.3 113 127-248 75-190 (541)
370 PF05935 Arylsulfotrans: Aryls 70.2 95 0.0021 29.0 13.7 122 52-183 153-302 (477)
371 PLN02193 nitrile-specifier pro 69.3 98 0.0021 28.8 16.6 110 58-183 228-352 (470)
372 KOG1645 RING-finger-containing 68.8 26 0.00057 31.4 7.3 72 93-182 194-266 (463)
373 KOG1587 Cytoplasmic dynein int 68.5 1.1E+02 0.0024 29.2 13.4 29 154-182 444-472 (555)
374 PF05935 Arylsulfotrans: Aryls 67.9 1.1E+02 0.0023 28.7 14.3 153 58-239 113-310 (477)
375 PRK14131 N-acetylneuraminic ac 67.5 94 0.002 27.9 14.6 102 58-170 38-146 (376)
376 KOG0321 WD40 repeat-containing 67.4 73 0.0016 30.5 10.1 88 131-219 73-168 (720)
377 KOG0305 Anaphase promoting com 67.4 1.1E+02 0.0024 28.6 18.6 112 46-182 217-331 (484)
378 PRK10115 protease 2; Provision 67.0 1.4E+02 0.0029 29.5 20.5 76 94-184 128-209 (686)
379 KOG2314 Translation initiation 66.7 60 0.0013 30.6 9.3 63 152-217 493-558 (698)
380 PF01011 PQQ: PQQ enzyme repea 66.5 9.2 0.0002 21.5 2.9 22 59-80 1-22 (38)
381 KOG0277 Peroxisomal targeting 66.3 81 0.0017 26.7 13.0 52 131-183 82-136 (311)
382 PF13570 PQQ_3: PQQ-like domai 63.9 24 0.00052 19.8 4.8 24 283-307 15-38 (40)
383 TIGR02608 delta_60_rpt delta-6 63.6 31 0.00067 21.5 5.0 17 200-216 4-20 (55)
384 PF09910 DUF2139: Uncharacteri 63.4 1E+02 0.0022 26.8 21.2 76 47-144 106-185 (339)
385 PF15492 Nbas_N: Neuroblastoma 63.1 41 0.00088 28.7 7.1 67 96-183 1-74 (282)
386 PLN02193 nitrile-specifier pro 62.9 1.3E+02 0.0029 28.0 16.8 77 58-149 278-360 (470)
387 PF11768 DUF3312: Protein of u 62.7 1.1E+02 0.0025 28.8 10.5 63 152-219 260-322 (545)
388 PRK14131 N-acetylneuraminic ac 62.4 1.2E+02 0.0026 27.2 13.9 39 132-170 189-228 (376)
389 KOG1310 WD40 repeat protein [G 61.9 1.1E+02 0.0024 28.9 10.1 72 94-183 52-126 (758)
390 PF03178 CPSF_A: CPSF A subuni 61.3 70 0.0015 27.9 8.9 58 49-111 132-191 (321)
391 KOG0267 Microtubule severing p 61.1 56 0.0012 31.7 8.3 119 95-239 73-193 (825)
392 KOG1524 WD40 repeat-containing 61.1 1.5E+02 0.0032 28.0 13.2 42 131-173 125-167 (737)
393 PF02191 OLF: Olfactomedin-lik 59.5 1.1E+02 0.0023 25.9 12.9 109 51-181 127-246 (250)
394 COG4590 ABC-type uncharacteriz 58.6 1.5E+02 0.0033 27.4 10.2 29 154-184 223-251 (733)
395 PRK10115 protease 2; Provision 58.6 1.9E+02 0.0042 28.5 17.2 114 49-181 129-254 (686)
396 KOG2395 Protein involved in va 58.2 58 0.0013 30.6 7.7 50 58-111 441-490 (644)
397 KOG1034 Transcriptional repres 57.7 1.3E+02 0.0029 26.4 11.7 87 130-218 113-203 (385)
398 COG5167 VID27 Protein involved 56.1 57 0.0012 30.5 7.3 51 130-182 581-632 (776)
399 KOG2314 Translation initiation 55.2 77 0.0017 29.9 8.0 59 93-166 493-552 (698)
400 smart00284 OLF Olfactomedin-li 55.2 1.3E+02 0.0028 25.5 17.1 142 58-218 83-245 (255)
401 KOG1188 WD40 repeat protein [G 54.8 1.5E+02 0.0033 26.2 12.9 154 48-218 72-235 (376)
402 COG5354 Uncharacterized protei 52.0 2.1E+02 0.0045 26.8 12.5 113 47-183 275-396 (561)
403 PF12894 Apc4_WD40: Anaphase-p 51.6 42 0.00092 20.0 4.1 30 154-184 14-43 (47)
404 KOG1063 RNA polymerase II elon 51.6 2.4E+02 0.0052 27.5 14.5 96 2-113 282-381 (764)
405 KOG0300 WD40 repeat-containing 50.9 1.7E+02 0.0037 25.6 12.4 109 51-184 319-430 (481)
406 PLN02153 epithiospecifier prot 50.7 1.8E+02 0.0038 25.6 14.3 82 51-148 27-117 (341)
407 PF08309 LVIVD: LVIVD repeat; 48.4 54 0.0012 19.0 4.4 29 48-78 3-31 (42)
408 TIGR03547 muta_rot_YjhT mutatr 47.6 2E+02 0.0042 25.3 12.9 50 132-182 168-225 (346)
409 PF04762 IKI3: IKI3 family; I 47.1 3.4E+02 0.0074 28.0 22.5 60 47-111 76-139 (928)
410 PF14339 DUF4394: Domain of un 44.8 1.6E+02 0.0035 24.6 7.8 70 95-184 29-105 (236)
411 PF04053 Coatomer_WDAD: Coatom 44.7 2.6E+02 0.0056 25.9 18.5 49 163-218 117-166 (443)
412 COG5354 Uncharacterized protei 42.4 2.9E+02 0.0063 25.9 9.5 118 51-181 37-159 (561)
413 KOG0974 WD-repeat protein WDR6 42.1 4E+02 0.0086 27.3 11.9 107 58-184 99-207 (967)
414 KOG1920 IkappaB kinase complex 40.3 1.7E+02 0.0036 30.6 8.3 68 94-180 70-137 (1265)
415 PF00780 CNH: CNH domain; Int 39.0 1.2E+02 0.0026 25.5 6.7 64 98-182 1-64 (275)
416 PF10647 Gmad1: Lipoprotein Lp 38.8 2.4E+02 0.0051 23.7 19.1 147 48-219 25-188 (253)
417 PF14783 BBS2_Mid: Ciliary BBS 38.6 1.5E+02 0.0033 21.5 11.0 90 59-176 16-108 (111)
418 KOG0642 Cell-cycle nuclear pro 37.8 3.6E+02 0.0078 25.6 10.3 62 154-218 492-553 (577)
419 KOG4714 Nucleoporin [Nuclear s 37.2 1.2E+02 0.0025 25.9 5.8 28 154-182 226-254 (319)
420 PF13964 Kelch_6: Kelch motif 36.7 77 0.0017 18.6 3.8 18 131-148 27-44 (50)
421 PF11725 AvrE: Pathogenicity f 34.9 1.3E+02 0.0029 32.5 6.9 22 5-26 619-640 (1774)
422 PF07569 Hira: TUP1-like enhan 34.2 2.6E+02 0.0057 22.9 8.0 15 131-145 31-45 (219)
423 PF15390 DUF4613: Domain of un 32.8 4.4E+02 0.0096 25.4 9.3 65 149-213 336-401 (671)
424 TIGR02171 Fb_sc_TIGR02171 Fibr 32.2 4.2E+02 0.0091 27.1 9.6 56 132-187 329-390 (912)
425 PF14298 DUF4374: Domain of un 31.8 4.2E+02 0.0091 24.5 12.2 52 131-184 366-426 (435)
426 KOG0267 Microtubule severing p 30.5 1.1E+02 0.0023 30.0 5.1 111 47-182 71-184 (825)
427 KOG1240 Protein kinase contain 29.7 7.1E+02 0.015 26.5 17.8 52 166-218 1165-1217(1431)
428 PF02191 OLF: Olfactomedin-lik 28.6 3.6E+02 0.0078 22.8 16.5 142 58-218 78-240 (250)
429 PF11161 DUF2944: Protein of u 28.3 1.8E+02 0.0039 23.2 5.3 54 164-218 75-129 (187)
430 COG4993 Gcd Glucose dehydrogen 27.2 6E+02 0.013 24.8 17.6 23 58-80 214-236 (773)
431 PF09826 Beta_propel: Beta pro 27.1 5.5E+02 0.012 24.4 15.1 26 282-307 328-354 (521)
432 KOG3621 WD40 repeat-containing 27.0 2.3E+02 0.005 27.6 6.7 29 154-183 127-155 (726)
433 COG4222 Uncharacterized protei 27.0 4.9E+02 0.011 23.7 8.4 16 155-170 203-218 (391)
434 PF14977 FAM194: FAM194 protei 26.7 3.6E+02 0.0078 22.1 11.9 21 199-219 68-88 (208)
435 KOG1379 Serine/threonine prote 26.5 3.5E+02 0.0076 23.8 7.1 83 52-153 174-257 (330)
436 KOG3567 Peptidylglycine alpha- 26.4 98 0.0021 28.5 4.0 52 131-183 444-497 (501)
437 KOG1230 Protein containing rep 24.7 5.6E+02 0.012 23.6 9.3 96 70-169 209-314 (521)
438 KOG1334 WD40 repeat protein [G 23.1 4E+02 0.0088 24.9 7.2 129 47-182 233-366 (559)
439 KOG0277 Peroxisomal targeting 23.0 4.8E+02 0.01 22.3 15.3 53 130-182 36-91 (311)
440 PF12768 Rax2: Cortical protei 23.0 4.9E+02 0.011 22.4 7.9 50 133-183 17-73 (281)
441 KOG3545 Olfactomedin and relat 22.8 4.7E+02 0.01 22.1 11.3 105 59-183 78-203 (249)
442 PF04053 Coatomer_WDAD: Coatom 22.7 6.2E+02 0.013 23.5 13.8 48 131-181 125-172 (443)
443 PF15416 DUF4623: Domain of un 22.1 5.7E+02 0.012 22.8 9.5 60 160-219 140-205 (442)
444 KOG1912 WD40 repeat protein [G 21.9 8.3E+02 0.018 24.6 11.9 54 130-183 87-144 (1062)
445 COG4246 Uncharacterized protei 21.3 4.8E+02 0.01 22.4 6.8 27 154-182 137-163 (340)
446 PF12275 DUF3616: Protein of u 21.0 5.9E+02 0.013 22.6 10.2 18 48-67 171-188 (330)
447 KOG0290 Conserved WD40 repeat- 21.0 5.6E+02 0.012 22.3 10.2 96 94-208 198-299 (364)
448 PTZ00486 apyrase Superfamily; 20.3 6.3E+02 0.014 22.6 11.1 22 162-184 124-145 (352)
449 KOG0290 Conserved WD40 repeat- 20.2 5.9E+02 0.013 22.2 11.9 153 47-217 197-356 (364)
No 1
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=100.00 E-value=4.1e-39 Score=272.78 Aligned_cols=306 Identities=52% Similarity=0.962 Sum_probs=266.1
Q ss_pred CCcccccCcEEEEEeCCCCCeEEEEEe--ccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCC
Q 046018 1 GPYTGVADGRILKWQGDELGWTEFAVT--TSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGG 78 (310)
Q Consensus 1 ~~~~~~~~~~i~~~~~~~~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~ 78 (310)
|||+++.+++++.|.....+|+++... ..++..|..+.-...+..+++|.||+++.+.|+|||+|..-|++.++++++
T Consensus 67 gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~ 146 (376)
T KOG1520|consen 67 GPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGG 146 (376)
T ss_pred CceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCC
Confidence 689999999999999988889999988 555566654322566788999999999996669999999999999999999
Q ss_pred eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEE
Q 046018 79 LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA 158 (310)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~ 158 (310)
+.+.+.+...+.+....|++.++++|. +|+|+++.+|+++..+..++.++.+|++++||+.++..+++..++.+|||++
T Consensus 147 ~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGla 225 (376)
T KOG1520|consen 147 LAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLA 225 (376)
T ss_pred cceeccccccCeeeeecCceeEcCCCe-EEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhccccccccc
Confidence 887777776777888999999999998 9999999999999999999999999999999999988888889999999999
Q ss_pred EecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEee
Q 046018 159 LSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK 237 (310)
Q Consensus 159 ~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~ 237 (310)
++||+.+++++++...+|.+|.+.+.+.+..+.|++ +||+||||..+++|++||+.........+.+..++.-++++..
T Consensus 226 LS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~~~~~~~~~~~p~vr~~~~~ 305 (376)
T KOG1520|consen 226 LSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKRSTLWRLLMKYPWVRKFIAK 305 (376)
T ss_pred CCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEecccchHHHhhhcChHHHHHHHh
Confidence 999999999999999999999999988888899988 9999999999999999999988777666667777878887777
Q ss_pred ccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018 238 LPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR 307 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~ 307 (310)
++.+...+....-+..++..+...|.+|++++.+.+.+|.....++.+.+++|+||+||...++|.++++
T Consensus 306 ~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~~p~i~~lkl 375 (376)
T KOG1520|consen 306 LPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLFNPYIARLKL 375 (376)
T ss_pred hccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccCcceeEEEec
Confidence 6655554444444444555666778999999999998898877788888889999999999999999885
No 2
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.96 E-value=2.5e-27 Score=200.17 Aligned_cols=231 Identities=28% Similarity=0.452 Sum_probs=173.3
Q ss_pred EEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeec
Q 046018 10 RILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEA 87 (310)
Q Consensus 10 ~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~ 87 (310)
.-+.|++..+. |++.....++++++.+..... .....|.|++++..+|+||+++.. ++.++|+.+++++.+....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~~~~~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--IDLPGPNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EESSSEEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--EecCCCceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 45789986665 999889999999887733221 223449999999338999999875 5666799999988887764
Q ss_pred CCc-cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeE
Q 046018 88 AGQ-PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFI 166 (310)
Q Consensus 88 ~~~-~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~l 166 (310)
.+. +...||+++++++|+ +|++++...... ....|.|++++++ ++.+.+...+..||||+++||++.|
T Consensus 80 ~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGN-LYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS--EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEE
T ss_pred CCCcccCCCceEEEcCCCC-EEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchhe
Confidence 333 677899999999999 999997532110 0012889999998 7888888888999999999999999
Q ss_pred EEEecCCceEEEEEccCC--CCCcceeeeeCC---CCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018 167 LIAETSNCRILRFWLHGP--NSGKQDVFAELP---GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS 241 (310)
Q Consensus 167 yv~~~~~~~i~~~~~~~~--~~~~~~~~~~~~---~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 241 (310)
|++++.+++|++|+++.. .....+.+...+ +.|+|+++|++|+||||.+.++. |.+++++|+.+..+++|
T Consensus 149 yv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-----I~~~~p~G~~~~~i~~p 223 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-----IVVFDPDGKLLREIELP 223 (246)
T ss_dssp EEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-----EEEEETTSCEEEEEE-S
T ss_pred eecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-----EEEECCCccEEEEEcCC
Confidence 999999999999999743 233445555432 45999999999999999998776 67777778888888887
Q ss_pred hhhhcccccCCCCc-eEEE
Q 046018 242 FRQLHSLLVGGKPH-ATAI 259 (310)
Q Consensus 242 ~~~~~~~~~~~~~~-~~~~ 259 (310)
.+.+++|+|++++. .+++
T Consensus 224 ~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 224 VPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp SSSEEEEEEESTTSSEEEE
T ss_pred CCCEEEEEEECCCCCEEEE
Confidence 67788888866553 4444
No 3
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.9e-26 Score=196.24 Aligned_cols=232 Identities=25% Similarity=0.339 Sum_probs=173.9
Q ss_pred EEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeE-EEEEee
Q 046018 10 RILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLA-TQLVTE 86 (310)
Q Consensus 10 ~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~-~~~~~~ 86 (310)
.-+.|+++... |+|+....++++++..............+.++.++. .+.|+++.+ |+++++++.+.. +.+...
T Consensus 28 EgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~-~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 28 EGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDA-GGRLIACEH--GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred cCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecC-CCeEEEEcc--ccEEEeccCCceeEEeccc
Confidence 44568887775 999999999999987533344455556677888888 878877755 466666665555 556555
Q ss_pred cCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeE
Q 046018 87 AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFI 166 (310)
Q Consensus 87 ~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~l 166 (310)
..+.+.+++|++.++++|+ +||+++.. +. .........|.||++++.++..+.+...+..||||+|+||++.|
T Consensus 105 ~~~~~~~r~ND~~v~pdG~-~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tl 177 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGR-IWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTL 177 (307)
T ss_pred cCCCCcCCCCceeEcCCCC-EEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEE
Confidence 5677788999999999999 99999872 00 01112335778999999654444444448899999999999999
Q ss_pred EEEecCCceEEEEEccC--CCCCcce--eeee-CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018 167 LIAETSNCRILRFWLHG--PNSGKQD--VFAE-LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS 241 (310)
Q Consensus 167 yv~~~~~~~i~~~~~~~--~~~~~~~--~~~~-~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 241 (310)
|++++..++|++|+.+. ....... .+.. .++.|||+++|++|+||++...++.. +.+++++|+.+..+.+|
T Consensus 178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~----v~~~~pdG~l~~~i~lP 253 (307)
T COG3386 178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGR----VVRFNPDGKLLGEIKLP 253 (307)
T ss_pred EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCce----EEEECCCCcEEEEEECC
Confidence 99999999999998872 2222222 2222 46899999999999999655554322 88999999999999999
Q ss_pred hhhhcccccCCCCc
Q 046018 242 FRQLHSLLVGGKPH 255 (310)
Q Consensus 242 ~~~~~~~~~~~~~~ 255 (310)
...+++|+|++.+.
T Consensus 254 ~~~~t~~~FgG~~~ 267 (307)
T COG3386 254 VKRPTNPAFGGPDL 267 (307)
T ss_pred CCCCccceEeCCCc
Confidence 88999999998764
No 4
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.81 E-value=6.1e-18 Score=137.12 Aligned_cols=261 Identities=13% Similarity=0.122 Sum_probs=182.2
Q ss_pred eCCCCC--eEEEEE-eccccccccCCCCCcc-ccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCc
Q 046018 15 QGDELG--WTEFAV-TTSQRKECVRPFAPDI-EHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQ 90 (310)
Q Consensus 15 ~~~~~~--W~~~~~-~~~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~ 90 (310)
-+..++ |++.-. ..+.++|+++..-... .....+|++|.+++ +|..||++...+|.|+|+++.+++++.-. ...
T Consensus 68 apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~aI~R~dpkt~evt~f~lp-~~~ 145 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGLAIGRLDPKTLEVTRFPLP-LEH 145 (353)
T ss_pred ccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcceeEEecCcccceEEeecc-ccc
Confidence 344455 764433 4466678776332222 33447899999999 99999999988999999999888877332 222
Q ss_pred cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEE
Q 046018 91 PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIA 169 (310)
Q Consensus 91 ~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~ 169 (310)
.....+..++|++|+ ||++.. .|.--++||.++.++++.. ....|+||+..|||. +|++
T Consensus 146 a~~nlet~vfD~~G~-lWFt~q------------------~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGs-vwya 205 (353)
T COG4257 146 ADANLETAVFDPWGN-LWFTGQ------------------IGAYGRLDPARNVISVFPAPQGGGPYGICATPDGS-VWYA 205 (353)
T ss_pred CCCcccceeeCCCcc-EEEeec------------------cccceecCcccCceeeeccCCCCCCcceEECCCCc-EEEE
Confidence 334578899999999 999984 3333478998887776543 345699999999999 9999
Q ss_pred ecCCceEEEEEccCCCCCcceeeee---CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhh--
Q 046018 170 ETSNCRILRFWLHGPNSGKQDVFAE---LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQ-- 244 (310)
Q Consensus 170 ~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~-- 244 (310)
+-..+.|.++|+... +.+.+.. +......+-.|+.|++|++++.... +..+++.-+.=...++|...
T Consensus 206 slagnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~-----l~rfdPs~~sW~eypLPgs~ar 277 (353)
T COG4257 206 SLAGNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGS-----LHRFDPSVTSWIEYPLPGSKAR 277 (353)
T ss_pred eccccceEEcccccC---CcceecCCCcccccccccccCccCcEEEeccCCce-----eeEeCcccccceeeeCCCCCCC
Confidence 888899999998643 2233321 1234567899999999999998887 67787766665556665433
Q ss_pred hcc--------cccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018 245 LHS--------LLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR 307 (310)
Q Consensus 245 ~~~--------~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~ 307 (310)
+.+ .|+..-+.+.+.+||+....++++..+.-. .+.-.+-...|++|++...-+.|..+..
T Consensus 278 pys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~pr~n--~gn~ql~gr~ge~W~~e~gvd~lv~~r~ 346 (353)
T COG4257 278 PYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIPRPN--SGNIQLDGRPGELWFTEAGVDALVTTRI 346 (353)
T ss_pred cceeeeccCCcEEeeccccCceeecCcccceEEEecCCCCC--CCceeccCCCCceeecccCcceeEEEEe
Confidence 222 234444556788999988888888654321 1222222458999999998888887753
No 5
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.81 E-value=3e-18 Score=135.84 Aligned_cols=237 Identities=16% Similarity=0.157 Sum_probs=164.5
Q ss_pred EEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccce-eceEEEeCCCC--cEEEEECCCc--eEEEeCCCCeEEE
Q 046018 10 RILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGR-PLGIRFDKKTG--DLYIADAYLG--FQVVGPEGGLATQ 82 (310)
Q Consensus 10 ~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~gl~~d~~~g--~l~v~~~~~g--i~~~d~~~~~~~~ 82 (310)
.-++|+.+.+. |+|++..+++++|..+.+ ......... ..|.++-- .| +.+++.-+.. |..+|........
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~-v~ra~ie~p~~ag~ilpv-~~~~q~~~v~~G~kf~i~nwd~~~~~a~v 95 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNK-VYRAKIEGPPSAGFILPV-EGGPQEFAVGCGSKFVIVNWDGVSESAKV 95 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhh-eEEEEEecCcceeEEEEe-cCCCceEEEeecceEEEEEcccccceeee
Confidence 45678887777 999999999999988855 233333232 23444422 33 5677766644 5555533333333
Q ss_pred EEeec---CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEE
Q 046018 83 LVTEA---AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVAL 159 (310)
Q Consensus 83 ~~~~~---~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~ 159 (310)
+...+ ....-++.|+-.+||+|+ .|.+.+...-. .+ ....|.+++|-+. ++.+.+.....-+||++|
T Consensus 96 ~~t~~ev~~d~kknR~NDgkvdP~Gr-yy~GtMad~~~-------~l-e~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~W 165 (310)
T KOG4499|consen 96 YRTLFEVQPDRKKNRLNDGKVDPDGR-YYGGTMADFGD-------DL-EPIGGELYSWLAG-HQVELIWNCVGISNGLAW 165 (310)
T ss_pred eeeccccCchHHhcccccCccCCCCc-eeeeeeccccc-------cc-cccccEEEEeccC-CCceeeehhccCCccccc
Confidence 33321 233456789999999999 79888753211 11 1125667777665 678877888888999999
Q ss_pred ecCCCeEEEEecCCceEEEEE--ccCCCCCcceeeeeC-------CCCCCeeEECCCCCEEEEEecCCccceeeeeeccc
Q 046018 160 SRDRTFILIAETSNCRILRFW--LHGPNSGKQDVFAEL-------PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSW 230 (310)
Q Consensus 160 ~~d~~~lyv~~~~~~~i~~~~--~~~~~~~~~~~~~~~-------~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~ 230 (310)
+.|.+.+|+.++.+-.|-.|| ..++....+..+.++ +-.|||+++|.+|+||||+++++.+ ...++.
T Consensus 166 d~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V----~~~dp~ 241 (310)
T KOG4499|consen 166 DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV----QKVDPT 241 (310)
T ss_pred cccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE----EEECCC
Confidence 999999999999999995555 555555444433221 2479999999999999999999885 556678
Q ss_pred cccEEeeccchhhhhcccccCCCCc-eEEEEEC
Q 046018 231 LGKTLLKLPLSFRQLHSLLVGGKPH-ATAIKLS 262 (310)
Q Consensus 231 ~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d 262 (310)
+|+.+..+.+|....++|+|++..- .+++...
T Consensus 242 tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 242 TGKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 9999999999999999999999864 3444443
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.72 E-value=1.6e-14 Score=143.51 Aligned_cols=218 Identities=19% Similarity=0.229 Sum_probs=142.2
Q ss_pred ccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeec------CC------ccccCCcceEEeCCCCEEEEEe
Q 046018 45 ICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEA------AG------QPLRFTNDLDIDEHKGVIYFTD 111 (310)
Q Consensus 45 ~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~------~~------~~~~~~~~i~~d~~g~~l~v~~ 111 (310)
....|+||+++++++.|||++.. +.|.++|..++.++.+.... .+ ..+..|.+|++++++..+||++
T Consensus 622 ~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 622 TFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred ccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 34679999999855669999987 45899999888876664321 00 1245799999999443499998
Q ss_pred CCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec---------------CCcccceEEEecCCCeEEEEecCCceE
Q 046018 112 SSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ---------------GLAFANGVALSRDRTFILIAETSNCRI 176 (310)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~---------------~~~~~~gi~~~~d~~~lyv~~~~~~~i 176 (310)
.. .+.|++||+.++....+.. .+..|+||+++||++.|||+++.+++|
T Consensus 702 ~~-----------------~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~I 764 (1057)
T PLN02919 702 AG-----------------QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSI 764 (1057)
T ss_pred CC-----------------CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeE
Confidence 64 6678889887776554321 234689999999999999999999999
Q ss_pred EEEEccCCCCCcc-----------eeeee--------CCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEee
Q 046018 177 LRFWLHGPNSGKQ-----------DVFAE--------LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLK 237 (310)
Q Consensus 177 ~~~~~~~~~~~~~-----------~~~~~--------~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~ 237 (310)
.+||++++..... ..+.. .-..|.++++|++|++||++..++. |..++..+..+..
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~r-----IrviD~~tg~v~t 839 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHK-----IKKLDPATKRVTT 839 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCE-----EEEEECCCCeEEE
Confidence 9999874321000 00000 1136899999999999999998876 4444433322221
Q ss_pred ccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEEE-eCCEEEEecCCCCeEEEecc
Q 046018 238 LPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVEE-KDGQLWMGSVLMPFIGIYNR 307 (310)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~-~~g~l~vgs~~~~~i~~~~~ 307 (310)
+... .. .-..+|... ...+..++.++. .+|+|||+...+++|.++++
T Consensus 840 iaG~------------G~----~G~~dG~~~-------~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 840 LAGT------------GK----AGFKDGKAL-------KAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred Eecc------------CC----cCCCCCccc-------ccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 1000 00 000112110 112344555543 46789999888888888875
No 7
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.70 E-value=9.7e-15 Score=123.32 Aligned_cols=208 Identities=20% Similarity=0.274 Sum_probs=141.5
Q ss_pred eceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEe-CCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 49 PLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDID-EHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
+.|+++++.+|.||+++... .|+++++++++...+ .. ..|++++++ ++|+ +|+++
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~-~~------~~~~G~~~~~~~g~-l~v~~--------------- 58 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI-DL------PGPNGMAFDRPDGR-LYVAD--------------- 58 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-ES------SSEEEEEEECTTSE-EEEEE---------------
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE-ec------CCCceEEEEccCCE-EEEEE---------------
Confidence 56899997789999999875 499999999876543 22 128999999 7777 99998
Q ss_pred cCCCCceEEEEeCCCCeEEEEec------CCcccceEEEecCCCeEEEEecCC--------ceEEEEEccCCCCCcceee
Q 046018 127 SGDKTGRLLKYEKTTKEVTILLQ------GLAFANGVALSRDRTFILIAETSN--------CRILRFWLHGPNSGKQDVF 192 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~~~~~~~------~~~~~~gi~~~~d~~~lyv~~~~~--------~~i~~~~~~~~~~~~~~~~ 192 (310)
.+.+..+|+++++.+.+.. ....||.++++++|+ +|++++.. ++|+++++++ .....
T Consensus 59 ----~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~~----~~~~~ 129 (246)
T PF08450_consen 59 ----SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPDG----KVTVV 129 (246)
T ss_dssp ----TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETTS----EEEEE
T ss_pred ----cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCCC----eEEEE
Confidence 4456666999888876543 345689999999998 99998764 6799999772 23333
Q ss_pred eeCCCCCCeeEECCCCC-EEEEEecCCccceeeeeecccc--cc-E-----EeeccchhhhhcccccCCCCc--------
Q 046018 193 AELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSWL--GK-T-----LLKLPLSFRQLHSLLVGGKPH-------- 255 (310)
Q Consensus 193 ~~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~~--g~-~-----~~~~~~~~~~~~~~~~~~~~~-------- 255 (310)
...-..|++|+++++|+ ||+++...+. |..++.. +. . +..++.....|.++++...+.
T Consensus 130 ~~~~~~pNGi~~s~dg~~lyv~ds~~~~-----i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~ 204 (246)
T PF08450_consen 130 ADGLGFPNGIAFSPDGKTLYVADSFNGR-----IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG 204 (246)
T ss_dssp EEEESSEEEEEEETTSSEEEEEETTTTE-----EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT
T ss_pred ecCcccccceEECCcchheeecccccce-----eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC
Confidence 33225699999999996 8888877665 4454432 22 1 222222112355555554332
Q ss_pred eEEEEECCCCCEEEEEEcCCCCeecceeEEEEe---CCEEEEecC
Q 046018 256 ATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEK---DGQLWMGSV 297 (310)
Q Consensus 256 ~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~l~vgs~ 297 (310)
..+.+++++|+++..+..+. ..++.++.. .++|||.+.
T Consensus 205 ~~I~~~~p~G~~~~~i~~p~----~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 205 GRIVVFDPDGKLLREIELPV----PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TEEEEEETTSCEEEEEE-SS----SSEEEEEEESTTSSEEEEEEB
T ss_pred CEEEEECCCccEEEEEcCCC----CCEEEEEEECCCCCEEEEEeC
Confidence 35667888898888887652 246777653 579999874
No 8
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.70 E-value=7.4e-15 Score=119.38 Aligned_cols=230 Identities=13% Similarity=0.127 Sum_probs=157.9
Q ss_pred ccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 45 ICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 45 ~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
....|..++.++ +|.+|......+ |-++|+.+++.+++.. .....|..|.+.|||. .||++.+
T Consensus 60 ~G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypL----g~Ga~Phgiv~gpdg~-~Witd~~---------- 123 (353)
T COG4257 60 NGSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPL----GSGASPHGIVVGPDGS-AWITDTG---------- 123 (353)
T ss_pred CCCCccccccCC-CCceEEecCccccceecCCCCCceEEEec----CCCCCCceEEECCCCC-eeEecCc----------
Confidence 335788899999 999999988755 8999999999876632 2345899999999999 9999943
Q ss_pred hhhcCCCCceEEEEeCCCCeEEEEecCCcc----cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCC
Q 046018 124 SILSGDKTGRLLKYEKTTKEVTILLQGLAF----ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGF 198 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~----~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~ 198 (310)
. .|.|+|+++.+++.+.-.... -+-..|+++|+ ||++.+ .+---++|+... ..+++.. ..+.
T Consensus 124 -------~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q-~G~yGrLdPa~~---~i~vfpaPqG~g 190 (353)
T COG4257 124 -------L-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQ-IGAYGRLDPARN---VISVFPAPQGGG 190 (353)
T ss_pred -------c-eeEEecCcccceEEeecccccCCCcccceeeCCCcc-EEEeec-cccceecCcccC---ceeeeccCCCCC
Confidence 2 699999998888876533333 25678999987 898865 344456666532 2344433 4467
Q ss_pred CCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhh---hccc--------ccCCCCceEEEEECCCCCE
Q 046018 199 PDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQ---LHSL--------LVGGKPHATAIKLSEKGEV 267 (310)
Q Consensus 199 p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~d~~g~~ 267 (310)
|.|||+.++|.+|++...++-+ ..+++..+ .-++++.|... ...+ +........+.++||..+.
T Consensus 191 pyGi~atpdGsvwyaslagnai----aridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 191 PYGICATPDGSVWYASLAGNAI----ARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred CcceEECCCCcEEEEeccccce----EEcccccC-CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc
Confidence 9999999999999999888763 34445455 44444444321 1112 2222233466788887655
Q ss_pred EEEEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEecccc
Q 046018 268 LEVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNRFR 309 (310)
Q Consensus 268 ~~~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~~~ 309 (310)
=..|..++.+. ..-+.-++..|++|+.....+.|.+||.+.
T Consensus 266 W~eypLPgs~a-rpys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 266 WIEYPLPGSKA-RPYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred ceeeeCCCCCC-CcceeeeccCCcEEeeccccCceeecCccc
Confidence 55565554332 222333466899999999999999999763
No 9
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.66 E-value=1.1e-15 Score=105.50 Aligned_cols=87 Identities=56% Similarity=1.017 Sum_probs=72.8
Q ss_pred cceEEeCC-CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCc
Q 046018 96 NDLDIDEH-KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNC 174 (310)
Q Consensus 96 ~~i~~d~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~ 174 (310)
|+++++++ |. +|+|+++.+|....++..++++..+|+|++|||.+++.+++..++..||||++++|+.+|+|+++...
T Consensus 1 ndldv~~~~g~-vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGT-VYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp -EEEE-TTT---EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CceeEecCCCE-EEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCc
Confidence 57899998 77 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEccC
Q 046018 175 RILRFWLHG 183 (310)
Q Consensus 175 ~i~~~~~~~ 183 (310)
+|.+|.+.|
T Consensus 80 Ri~rywl~G 88 (89)
T PF03088_consen 80 RILRYWLKG 88 (89)
T ss_dssp EEEEEESSS
T ss_pred eEEEEEEeC
Confidence 999999875
No 10
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.59 E-value=1.2e-12 Score=130.22 Aligned_cols=159 Identities=14% Similarity=0.171 Sum_probs=114.6
Q ss_pred cccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeec-C--------CccccCCcceEEeCCCCEEEEEeCC
Q 046018 44 HICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEA-A--------GQPLRFTNDLDIDEHKGVIYFTDSS 113 (310)
Q Consensus 44 ~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~-~--------~~~~~~~~~i~~d~~g~~l~v~~~~ 113 (310)
.....|.++++|+.+|+|||++..+ .|.++|.++.....+.... . ...+..|.+|+++++++.|||++..
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 3446788999998678999999884 5999999876544332211 0 1235679999999988779999854
Q ss_pred CchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-----------------CcccceEEEecCCCeEEEEecCCceE
Q 046018 114 TSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-----------------LAFANGVALSRDRTFILIAETSNCRI 176 (310)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----------------~~~~~gi~~~~d~~~lyv~~~~~~~i 176 (310)
.+.|.++|..++..+++... +..|.+++++|+++.+||++..+++|
T Consensus 645 -----------------n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I 707 (1057)
T PLN02919 645 -----------------NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQI 707 (1057)
T ss_pred -----------------CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeE
Confidence 56788999887777665321 34688999999777799999999999
Q ss_pred EEEEccCCCCCcc------eee----e--eCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018 177 LRFWLHGPNSGKQ------DVF----A--ELPGFPDNVRSNSNGE-FWVALHAKKG 219 (310)
Q Consensus 177 ~~~~~~~~~~~~~------~~~----~--~~~~~p~~i~~d~~G~-l~va~~~~~~ 219 (310)
++++..++..... ... . .....|.+|+++++|+ |||++..++.
T Consensus 708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 9999864321000 000 0 0114689999999986 9999988776
No 11
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=5.4e-12 Score=111.82 Aligned_cols=156 Identities=16% Similarity=0.185 Sum_probs=102.7
Q ss_pred cceeceEEEeCCCCcEEEEECC-CceEEEeC--CCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAY-LGFQVVGP--EGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~--~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~ 122 (310)
..+||.+.++++...||+++.+ +.|+.++. .+++++..... .......|++|+++|+|+++|+....
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~--------- 212 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL--------- 212 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT---------
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC---------
Confidence 4789999999955569999987 45665554 44445442221 23445689999999999999999843
Q ss_pred hhhhcCCCCceEE--EEeCCCCeEEEEe---c---C---CcccceEEEecCCCeEEEEecCCceEEEEEccCC--CCCcc
Q 046018 123 SSILSGDKTGRLL--KYEKTTKEVTILL---Q---G---LAFANGVALSRDRTFILIAETSNCRILRFWLHGP--NSGKQ 189 (310)
Q Consensus 123 ~~~~~~~~~g~v~--~~d~~~~~~~~~~---~---~---~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~--~~~~~ 189 (310)
.+.|. .++.+++.++.+. . . ...+.+|+++|||++||+++..++.|.+|+.+.. .+...
T Consensus 213 --------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~ 284 (345)
T PF10282_consen 213 --------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLV 284 (345)
T ss_dssp --------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEE
T ss_pred --------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEE
Confidence 55554 4554466665432 1 1 1257899999999999999999999999998632 22222
Q ss_pred eeeeeCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018 190 DVFAELPGFPDNVRSNSNGE-FWVALHAKKG 219 (310)
Q Consensus 190 ~~~~~~~~~p~~i~~d~~G~-l~va~~~~~~ 219 (310)
..+......|++++++++|+ |||++...+.
T Consensus 285 ~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 285 QTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp EEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred EEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 22222345699999999996 6666666554
No 12
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.51 E-value=3.5e-11 Score=106.67 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=105.7
Q ss_pred cceeceEEEeCCCCcEEEEECC---C-c--eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAY---L-G--FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR 119 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~---~-g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~ 119 (310)
...|..|+++++...||++... . + .++++.++++++.+..... ....|..+++++++++||+++..
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~--~g~~p~~i~~~~~g~~l~vany~------ 107 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS--GGSSPCHIAVDPDGRFLYVANYG------ 107 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE--SSSCEEEEEECTTSSEEEEEETT------
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc--CCCCcEEEEEecCCCEEEEEEcc------
Confidence 3678899999977789999884 2 3 4566777678776644321 23468899999999999999854
Q ss_pred hhhhhhhcCCCCceEEEEeCCC-CeEEEEe--------------cCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 120 QFMSSILSGDKTGRLLKYEKTT-KEVTILL--------------QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 120 ~~~~~~~~~~~~g~v~~~d~~~-~~~~~~~--------------~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
.|.|..++.+. +...... .....|+.+.++||+++||+++.+.++|++|+.+..
T Consensus 108 -----------~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 108 -----------GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp -----------TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred -----------CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 66666665543 5443321 123557899999999999999999999999999754
Q ss_pred C--CCcceeee-eCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018 185 N--SGKQDVFA-ELPGFPDNVRSNSNGE-FWVALHAKKG 219 (310)
Q Consensus 185 ~--~~~~~~~~-~~~~~p~~i~~d~~G~-l~va~~~~~~ 219 (310)
. +.....+. .....|+.++++++|+ +||.+...+.
T Consensus 177 ~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~ 215 (345)
T PF10282_consen 177 TGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNT 215 (345)
T ss_dssp S-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred CceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCc
Confidence 2 22211121 1235799999999985 7777665555
No 13
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=5.9e-10 Score=94.28 Aligned_cols=158 Identities=14% Similarity=0.208 Sum_probs=106.1
Q ss_pred ccccceeceEEEeCCCCcEEEEECC--C-c--eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchh
Q 046018 43 EHICGRPLGIRFDKKTGDLYIADAY--L-G--FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ 117 (310)
Q Consensus 43 ~~~~~~p~gl~~d~~~g~l~v~~~~--~-g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~ 117 (310)
....+.|.-|+++++...||++... . + .+++|+++|+++.+-.. ..+...|..+++|++|+++++++.+
T Consensus 36 v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~--~~~g~~p~yvsvd~~g~~vf~AnY~---- 109 (346)
T COG2706 36 VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ--TLPGSPPCYVSVDEDGRFVFVANYH---- 109 (346)
T ss_pred ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc--ccCCCCCeEEEECCCCCEEEEEEcc----
Confidence 3344788999999955589999876 2 3 56778888988765433 2234456899999999978888754
Q ss_pred hhhhhhhhhcCCCCceEEEEeC-CCCeEEEE----ecCC---------cccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 118 RRQFMSSILSGDKTGRLLKYEK-TTKEVTIL----LQGL---------AFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 118 ~~~~~~~~~~~~~~g~v~~~d~-~~~~~~~~----~~~~---------~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
.|.|.++-. +.|..... .... +.++-..++||+++|++++-+.++|+.|+.+.
T Consensus 110 -------------~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d 176 (346)
T COG2706 110 -------------SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD 176 (346)
T ss_pred -------------CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc
Confidence 455544433 12433321 1111 12456789999999999999999999999985
Q ss_pred CCCCcceeee-eCCCCCCeeEECCCCC-EEEEEecCCc
Q 046018 184 PNSGKQDVFA-ELPGFPDNVRSNSNGE-FWVALHAKKG 219 (310)
Q Consensus 184 ~~~~~~~~~~-~~~~~p~~i~~d~~G~-l~va~~~~~~ 219 (310)
+.+....... .....|+.|++.++|. .|+.+--++.
T Consensus 177 g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~st 214 (346)
T COG2706 177 GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNST 214 (346)
T ss_pred CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCE
Confidence 5443333221 2235799999999997 4555444444
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.43 E-value=5.5e-10 Score=98.52 Aligned_cols=153 Identities=10% Similarity=0.059 Sum_probs=100.5
Q ss_pred ceeceEEEeCCCCcEEEEECC-CceEEEeCC-CCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPE-GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~-~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
+.|..|+++++...||++... .+|..++.+ +++++...... ....|..|+++|+|+++|++...
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~---~~~~p~~i~~~~~g~~l~v~~~~----------- 100 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP---LPGSPTHISTDHQGRFLFSASYN----------- 100 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec---CCCCceEEEECCCCCEEEEEEcC-----------
Confidence 568889999944458888765 457655554 45554332221 11258899999999988888743
Q ss_pred hhcCCCCceEEEEeCCC-CeE-EE--EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcc--eeee-eCC
Q 046018 125 ILSGDKTGRLLKYEKTT-KEV-TI--LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQ--DVFA-ELP 196 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~-~~~-~~--~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~--~~~~-~~~ 196 (310)
.+.|..|+.++ +.. +. .......|.+++++||++++|+++...+.|.+|+.+.. ..... .... ...
T Consensus 101 ------~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g 174 (330)
T PRK11028 101 ------ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG 174 (330)
T ss_pred ------CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC
Confidence 56777776642 221 11 12334568999999999999999999999999998742 11110 1111 123
Q ss_pred CCCCeeEECCCCC-EEEEEecCCc
Q 046018 197 GFPDNVRSNSNGE-FWVALHAKKG 219 (310)
Q Consensus 197 ~~p~~i~~d~~G~-l~va~~~~~~ 219 (310)
..|+.++++++|+ +|+++...+.
T Consensus 175 ~~p~~~~~~pdg~~lyv~~~~~~~ 198 (330)
T PRK11028 175 AGPRHMVFHPNQQYAYCVNELNSS 198 (330)
T ss_pred CCCceEEECCCCCEEEEEecCCCE
Confidence 4689999999996 6666654554
No 15
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=1.6e-10 Score=99.45 Aligned_cols=215 Identities=15% Similarity=0.149 Sum_probs=139.7
Q ss_pred eeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 48 RPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
-..|..++++.+.||+++..+ .|.++++.+++.+.+.. +...++.+.++..|. |+++.
T Consensus 26 ~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~-----p~~~~~~~~~d~~g~-Lv~~~--------------- 84 (307)
T COG3386 26 LGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS-----PGGFSSGALIDAGGR-LIACE--------------- 84 (307)
T ss_pred cccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC-----CCCcccceeecCCCe-EEEEc---------------
Confidence 445777888677799999885 49999998887655532 223477788888887 88775
Q ss_pred cCCCCceEEEEeCCCCeE-EEEec-----CCcccceEEEecCCCeEEEEecC-----------CceEEEEEccCCCCCcc
Q 046018 127 SGDKTGRLLKYEKTTKEV-TILLQ-----GLAFANGVALSRDRTFILIAETS-----------NCRILRFWLHGPNSGKQ 189 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~~-~~~~~-----~~~~~~gi~~~~d~~~lyv~~~~-----------~~~i~~~~~~~~~~~~~ 189 (310)
..+++++++++.. +.+.. ....+|...++|||+ +|++++. .++||++++.+. ..
T Consensus 85 -----~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~---~~ 155 (307)
T COG3386 85 -----HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDPDGG---VV 155 (307)
T ss_pred -----cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCccccCCcceEEEEcCCCC---EE
Confidence 2356666665555 43332 235689999999998 8998776 247999987543 22
Q ss_pred eeeeeCCCCCCeeEECCCC-CEEEEEecCCccceeeeeecccc---ccE-----EeeccchhhhhcccccCCCCc-----
Q 046018 190 DVFAELPGFPDNVRSNSNG-EFWVALHAKKGLFGKLILLNSWL---GKT-----LLKLPLSFRQLHSLLVGGKPH----- 255 (310)
Q Consensus 190 ~~~~~~~~~p~~i~~d~~G-~l~va~~~~~~~~~~~i~~~~~~---g~~-----~~~~~~~~~~~~~~~~~~~~~----- 255 (310)
+++.+.-..|++|++++|| .+|+++...+. +.+++.. +.. ..........|.+++......
T Consensus 156 ~l~~~~~~~~NGla~SpDg~tly~aDT~~~~-----i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a 230 (307)
T COG3386 156 RLLDDDLTIPNGLAFSPDGKTLYVADTPANR-----IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA 230 (307)
T ss_pred EeecCcEEecCceEECCCCCEEEEEeCCCCe-----EEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence 3333323468999999999 79999987665 4444322 222 111122223444444332222
Q ss_pred ----eEEEEECCCCCEEEEEEcCCCCeecceeEEEEe---CCEEEEecCCCCe
Q 046018 256 ----ATAIKLSEKGEVLEVLEDCEGKTLSFISEVEEK---DGQLWMGSVLMPF 301 (310)
Q Consensus 256 ----~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~~---~g~l~vgs~~~~~ 301 (310)
..+.+++|+|+.+..+..|. ..++.++.. .++||+.+.....
T Consensus 231 ~~~g~~v~~~~pdG~l~~~i~lP~----~~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 231 VWGGGRVVRFNPDGKLLGEIKLPV----KRPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred ccCCceEEEECCCCcEEEEEECCC----CCCccceEeCCCcCEEEEEecCCCC
Confidence 26778899999998887764 234555444 4899999987744
No 16
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=9.6e-11 Score=99.01 Aligned_cols=155 Identities=16% Similarity=0.207 Sum_probs=110.2
Q ss_pred ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
+++|..-++|+...|++.+.+ ++|+.++.+.++++..... .-.+...|++|++.|+|+.+|+...-
T Consensus 145 ~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~-~v~~G~GPRHi~FHpn~k~aY~v~EL------------ 211 (346)
T COG2706 145 PHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA-EVKPGAGPRHIVFHPNGKYAYLVNEL------------ 211 (346)
T ss_pred CccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc-ccCCCCCcceEEEcCCCcEEEEEecc------------
Confidence 456777788934478888887 5688887778877654222 22456789999999999999988742
Q ss_pred hcCCCCce--EEEEeCCCCeEEEEec------C---CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee
Q 046018 126 LSGDKTGR--LLKYEKTTKEVTILLQ------G---LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE 194 (310)
Q Consensus 126 ~~~~~~g~--v~~~d~~~~~~~~~~~------~---~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~ 194 (310)
+++ ++.|++..++++.+.. + ......|.+++||++||+++.+.+.|+.|..+.. .+....+..
T Consensus 212 -----~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~-~g~L~~~~~ 285 (346)
T COG2706 212 -----NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD-GGKLELVGI 285 (346)
T ss_pred -----CCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC-CCEEEEEEE
Confidence 444 6667776677776542 1 2234579999999999999999999999977632 122333322
Q ss_pred --CC-CCCCeeEECCCCCEEEEEecCCcc
Q 046018 195 --LP-GFPDNVRSNSNGEFWVALHAKKGL 220 (310)
Q Consensus 195 --~~-~~p~~i~~d~~G~l~va~~~~~~~ 220 (310)
.. ..|+.+.+++.|++.++.++....
T Consensus 286 ~~teg~~PR~F~i~~~g~~Liaa~q~sd~ 314 (346)
T COG2706 286 TPTEGQFPRDFNINPSGRFLIAANQKSDN 314 (346)
T ss_pred eccCCcCCccceeCCCCCEEEEEccCCCc
Confidence 22 359999999999988887766543
No 17
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.31 E-value=7.5e-09 Score=89.33 Aligned_cols=186 Identities=15% Similarity=0.103 Sum_probs=111.8
Q ss_pred ccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCC-ceEEEeCCCCeEE
Q 046018 4 TGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYL-GFQVVGPEGGLAT 81 (310)
Q Consensus 4 ~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~-gi~~~d~~~~~~~ 81 (310)
++..++.+..|+.+...-+. .......+.++++++ +|+ +|++.... .|..+|..+++..
T Consensus 6 s~~~d~~v~~~d~~t~~~~~------------------~~~~~~~~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 6 SNEKDNTISVIDTATLEVTR------------------TFPVGQRPRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVI 66 (300)
T ss_pred EecCCCEEEEEECCCCceEE------------------EEECCCCCCceEECC-CCCEEEEEECCCCeEEEEECCCCcEE
Confidence 45567788888875542110 011123467899998 554 67776554 4888898887654
Q ss_pred EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEec
Q 046018 82 QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR 161 (310)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~ 161 (310)
..... ...+..++++++|+.+|++... .+.+..||..+++..........+.+++++|
T Consensus 67 ~~~~~-----~~~~~~~~~~~~g~~l~~~~~~-----------------~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 124 (300)
T TIGR03866 67 GTLPS-----GPDPELFALHPNGKILYIANED-----------------DNLVTVIDIETRKVLAEIPVGVEPEGMAVSP 124 (300)
T ss_pred EeccC-----CCCccEEEECCCCCEEEEEcCC-----------------CCeEEEEECCCCeEEeEeeCCCCcceEEECC
Confidence 32221 1235678999999967776532 5689999998765433333334578999999
Q ss_pred CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEE-EEEecCCccceeeeeec-cccccEEeec
Q 046018 162 DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFW-VALHAKKGLFGKLILLN-SWLGKTLLKL 238 (310)
Q Consensus 162 d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~-va~~~~~~~~~~~i~~~-~~~g~~~~~~ 238 (310)
|++.++++......+..++..+.. ..........|..++++++|..+ ++....+. +..+ ...++.+..+
T Consensus 125 dg~~l~~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~-----v~i~d~~~~~~~~~~ 195 (300)
T TIGR03866 125 DGKIVVNTSETTNMAHFIDTKTYE---IVDNVLVDQRPRFAEFTADGKELWVSSEIGGT-----VSVIDVATRKVIKKI 195 (300)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCe---EEEEEEcCCCccEEEECCCCCEEEEEcCCCCE-----EEEEEcCcceeeeee
Confidence 999777665444566777765321 11111123457789999999754 55433443 3333 3445544443
No 18
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.28 E-value=8.6e-09 Score=90.90 Aligned_cols=153 Identities=12% Similarity=0.169 Sum_probs=97.3
Q ss_pred ceeceEEEeCCCCcEEEEECCC-ceEEEeCCC-CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEG-GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
+.|.+++++++...||++.... .|..++.+. +.......... ....|..++++|+|+++|+++..
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~----------- 146 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLK----------- 146 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCC-----------
Confidence 5788999999444688887654 366665542 22211111111 12358889999999988888854
Q ss_pred hhcCCCCceEEEEeCCC-CeEEE------EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC--CCCcceeeeeC
Q 046018 125 ILSGDKTGRLLKYEKTT-KEVTI------LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP--NSGKQDVFAEL 195 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~-~~~~~------~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~--~~~~~~~~~~~ 195 (310)
.+.|..||.++ +.+.. .......|.+++++||++++|+++..++.|.+|+.+.. .......+...
T Consensus 147 ------~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 220 (330)
T PRK11028 147 ------EDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM 220 (330)
T ss_pred ------CCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence 67788888754 33321 11234568999999999999999988999999998732 11111111111
Q ss_pred C------CCCCeeEECCCCC-EEEEEecCC
Q 046018 196 P------GFPDNVRSNSNGE-FWVALHAKK 218 (310)
Q Consensus 196 ~------~~p~~i~~d~~G~-l~va~~~~~ 218 (310)
| ..|..+.++++|+ +|+++...+
T Consensus 221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~ 250 (330)
T PRK11028 221 PADFSDTRWAADIHITPDGRHLYACDRTAS 250 (330)
T ss_pred CCcCCCCccceeEEECCCCCEEEEecCCCC
Confidence 1 2344688999996 777654444
No 19
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.19 E-value=6.7e-08 Score=83.39 Aligned_cols=133 Identities=14% Similarity=0.148 Sum_probs=92.7
Q ss_pred CcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018 59 GDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY 137 (310)
Q Consensus 59 g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~ 137 (310)
+++|++....+ |.++|.++++....... ...+..++++++|+.+|++... .+.|..|
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-----~~~~~~l~~~~dg~~l~~~~~~-----------------~~~v~~~ 58 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-----GQRPRGITLSKDGKLLYVCASD-----------------SDTIQVI 58 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC-----CCCCCceEECCCCCEEEEEECC-----------------CCeEEEE
Confidence 35777776654 88889887765433321 1246789999999867777632 6779999
Q ss_pred eCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCCCeeEECCCCCEEEEEe
Q 046018 138 EKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFPDNVRSNSNGEFWVALH 215 (310)
Q Consensus 138 d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~l~va~~ 215 (310)
|.++++..........+..++++|+++.+|++....+.|.+||+... ..+.. ....|.+++++++|.+++...
T Consensus 59 d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~-----~~~~~~~~~~~~~~~~~~~dg~~l~~~~ 133 (300)
T TIGR03866 59 DLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETR-----KVLAEIPVGVEPEGMAVSPDGKIVVNTS 133 (300)
T ss_pred ECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCC-----eEEeEeeCCCCcceEEECCCCCEEEEEe
Confidence 99877665433334457789999999988888777789999998642 11222 223578899999998877665
Q ss_pred cCC
Q 046018 216 AKK 218 (310)
Q Consensus 216 ~~~ 218 (310)
...
T Consensus 134 ~~~ 136 (300)
T TIGR03866 134 ETT 136 (300)
T ss_pred cCC
Confidence 543
No 20
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.19 E-value=2.3e-08 Score=85.88 Aligned_cols=154 Identities=19% Similarity=0.257 Sum_probs=101.1
Q ss_pred eeceEEEeCCCCcEEEEECCC-------------ceEEEeCCCCeEEEEEeecC--CccccCCcceEEeCCC-----CEE
Q 046018 48 RPLGIRFDKKTGDLYIADAYL-------------GFQVVGPEGGLATQLVTEAA--GQPLRFTNDLDIDEHK-----GVI 107 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~-------------gi~~~d~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~g-----~~l 107 (310)
.+.++.+|+ .|+|||.|.+. .|+.+|..+.++.+....+. ..+..+.+++++|... .++
T Consensus 2 sV~~v~iD~-~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 2 SVQRVQIDE-CGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp -EEEEEE-T-TSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 356799999 99999999751 38999999988755444332 2245578999999731 359
Q ss_pred EEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCc--------------------ccceEEEec---CCC
Q 046018 108 YFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLA--------------------FANGVALSR---DRT 164 (310)
Q Consensus 108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~--------------------~~~gi~~~~---d~~ 164 (310)
|++|.. .+.+..||..+++..++..... ...||+++| |++
T Consensus 81 YItD~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r 143 (287)
T PF03022_consen 81 YITDSG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGR 143 (287)
T ss_dssp EEEETT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-
T ss_pred EEeCCC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCcc
Confidence 999965 4579999998887766542211 134788876 888
Q ss_pred eEEEEecCCceEEEEEcc---CCCCCc-------ceeeeeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018 165 FILIAETSNCRILRFWLH---GPNSGK-------QDVFAELPGFPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 165 ~lyv~~~~~~~i~~~~~~---~~~~~~-------~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~ 219 (310)
+||+....+..+|++..+ ...... .+.+...+...+++++|++|+||++....+.
T Consensus 144 ~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~a 208 (287)
T PF03022_consen 144 WLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNA 208 (287)
T ss_dssp EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTE
T ss_pred EEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCe
Confidence 999997777889999764 111111 1222222335689999999999999988764
No 21
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=6.2e-08 Score=86.94 Aligned_cols=151 Identities=13% Similarity=0.174 Sum_probs=112.3
Q ss_pred ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
..|.++++++...++|+.+.. ..|..+|..+.+....... ...|.+++++++++.+|+++...
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-----G~~P~~~~~~~~~~~vYV~n~~~----------- 137 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-----GLGPVGLAVDPDGKYVYVANAGN----------- 137 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-----ccCCceEEECCCCCEEEEEeccc-----------
Confidence 578899999855569999877 4699999766654433222 22799999999998899999641
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcce--eeeeCCCCCCeeE
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQD--VFAELPGFPDNVR 203 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~p~~i~ 203 (310)
..+.+..+|.++.+..........|.+++++|+++.+|+++..++.|..++.++....... ........|.+++
T Consensus 138 ----~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~ 213 (381)
T COG3391 138 ----GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIA 213 (381)
T ss_pred ----CCceEEEEeCCCCeEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEE
Confidence 2678999999887765544444468999999999999999999999999997654222100 0112335789999
Q ss_pred ECCCCC-EEEEEecC
Q 046018 204 SNSNGE-FWVALHAK 217 (310)
Q Consensus 204 ~d~~G~-l~va~~~~ 217 (310)
++++|+ +|++....
T Consensus 214 v~~~g~~~yV~~~~~ 228 (381)
T COG3391 214 VDPDGNRVYVANDGS 228 (381)
T ss_pred ECCCCCEEEEEeccC
Confidence 999997 88887765
No 22
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.11 E-value=5.8e-09 Score=93.19 Aligned_cols=142 Identities=19% Similarity=0.263 Sum_probs=97.1
Q ss_pred cceeceEEEeCCCCcEEEEEC-----------C-C-ceEEEeCC--CCeE---EEEEeecCCccccCCcceEEeCCCCEE
Q 046018 46 CGRPLGIRFDKKTGDLYIADA-----------Y-L-GFQVVGPE--GGLA---TQLVTEAAGQPLRFTNDLDIDEHKGVI 107 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~-----------~-~-gi~~~d~~--~~~~---~~~~~~~~~~~~~~~~~i~~d~~g~~l 107 (310)
...|.+|++|+ +|+|||++. . . .|.+++.. +++. +.+++ .+..|++|++.++| +
T Consensus 13 ~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-----~l~~p~Gi~~~~~G--l 84 (367)
T TIGR02604 13 LRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-----ELSMVTGLAVAVGG--V 84 (367)
T ss_pred cCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-----CCCCccceeEecCC--E
Confidence 37899999999 999999974 1 2 47777432 2332 33332 24478999999887 9
Q ss_pred EEEeCCCchhhhhhhhhhhcCCCCceEEEE-eCCC-----CeEEEEecC--------CcccceEEEecCCCeEEEEecC-
Q 046018 108 YFTDSSTSFQRRQFMSSILSGDKTGRLLKY-EKTT-----KEVTILLQG--------LAFANGVALSRDRTFILIAETS- 172 (310)
Q Consensus 108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~-d~~~-----~~~~~~~~~--------~~~~~gi~~~~d~~~lyv~~~~- 172 (310)
||+. ...|+++ +.+. ++.+++... ...++++++.|||+ ||++...
T Consensus 85 yV~~-------------------~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~ 144 (367)
T TIGR02604 85 YVAT-------------------PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNT 144 (367)
T ss_pred EEeC-------------------CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccC
Confidence 9986 4457777 3321 133444332 23378999999997 9997652
Q ss_pred ------------------CceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018 173 ------------------NCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 173 ------------------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~ 218 (310)
.+.|++++++++ ..+.++.--..|.++++|++|++|++++...
T Consensus 145 ~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~~ 205 (367)
T TIGR02604 145 LASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHGFQNPYGHSVDSWGDVFFCDNDDP 205 (367)
T ss_pred CCceeccCCCccCcccccCceEEEEecCCC---eEEEEecCcCCCccceECCCCCEEEEccCCC
Confidence 157999998864 2455554335689999999999999988554
No 23
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.01 E-value=1.4e-06 Score=76.35 Aligned_cols=85 Identities=9% Similarity=-0.031 Sum_probs=55.7
Q ss_pred ccccccccCCCCCccccccceeceEEEeCCCCcEEEEEC---------C-CceEEEeCCCCeEEEEEeecCCc---cccC
Q 046018 28 TSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADA---------Y-LGFQVVGPEGGLATQLVTEAAGQ---PLRF 94 (310)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~---------~-~gi~~~d~~~~~~~~~~~~~~~~---~~~~ 94 (310)
.+..+|.++.+..........|+++ ++++...||++.. . +.|..+|..+.+...-+..+..+ ....
T Consensus 28 ~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred eEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence 3444554442212223344688897 8996668999998 4 34899999988764333332221 1456
Q ss_pred CcceEEeCCCCEEEEEeCC
Q 046018 95 TNDLDIDEHKGVIYFTDSS 113 (310)
Q Consensus 95 ~~~i~~d~~g~~l~v~~~~ 113 (310)
++.+++++||++|||.+..
T Consensus 107 ~~~~~ls~dgk~l~V~n~~ 125 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFS 125 (352)
T ss_pred cceEEECCCCCEEEEecCC
Confidence 7899999999999998844
No 24
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=7.6e-08 Score=86.37 Aligned_cols=150 Identities=18% Similarity=0.214 Sum_probs=108.7
Q ss_pred ceeceEEEeCCCCcEEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
..|++++++++.+.+||++.. ..+.++|..++++... .+.+ ..|.+++++|+|+.+|+++..
T Consensus 116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~--~~vG---~~P~~~a~~p~g~~vyv~~~~---------- 180 (381)
T COG3391 116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT--IPVG---NTPTGVAVDPDGNKVYVTNSD---------- 180 (381)
T ss_pred cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE--EecC---CCcceEEECCCCCeEEEEecC----------
Confidence 489999999966699999995 3499999998876544 2122 257899999999999999854
Q ss_pred hhhcCCCCceEEEEeCCCCeEEE-----EecCCcccceEEEecCCCeEEEEecCC--ceEEEEEccCCCCCcceeeeeCC
Q 046018 124 SILSGDKTGRLLKYEKTTKEVTI-----LLQGLAFANGVALSRDRTFILIAETSN--CRILRFWLHGPNSGKQDVFAELP 196 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~~~-----~~~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~ 196 (310)
.+.|..+|.++..... .......|.++++++|++.+|+++..+ +.+.++|................
T Consensus 181 -------~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~ 253 (381)
T COG3391 181 -------DNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG 253 (381)
T ss_pred -------CCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC
Confidence 7889999987654442 123456789999999999999998887 69999887643221111111122
Q ss_pred CCCCeeEECCCCC-EEEEEecCCc
Q 046018 197 GFPDNVRSNSNGE-FWVALHAKKG 219 (310)
Q Consensus 197 ~~p~~i~~d~~G~-l~va~~~~~~ 219 (310)
.|.++.++++|. +|++....+.
T Consensus 254 -~~~~v~~~p~g~~~yv~~~~~~~ 276 (381)
T COG3391 254 -APRGVAVDPAGKAAYVANSQGGT 276 (381)
T ss_pred -CCCceeECCCCCEEEEEecCCCe
Confidence 688999999996 5555455444
No 25
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.96 E-value=1.9e-07 Score=81.81 Aligned_cols=121 Identities=12% Similarity=0.030 Sum_probs=86.1
Q ss_pred CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec---------CC
Q 046018 103 HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET---------SN 173 (310)
Q Consensus 103 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~---------~~ 173 (310)
+++++||.+.... ...++|+.+|.++.++.-.......|+++ ++||++.||++++ .+
T Consensus 11 ~~~~v~V~d~~~~-------------~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~ 76 (352)
T TIGR02658 11 DARRVYVLDPGHF-------------AATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRT 76 (352)
T ss_pred CCCEEEEECCccc-------------ccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCC
Confidence 3446999986421 12488999999988876655666789997 9999999999999 88
Q ss_pred ceEEEEEccCCCCCcceeee-eC-----CCCCCeeEECCCCC-EEEEEec-CCccceeeeeeccccccEEeeccchh
Q 046018 174 CRILRFWLHGPNSGKQDVFA-EL-----PGFPDNVRSNSNGE-FWVALHA-KKGLFGKLILLNSWLGKTLLKLPLSF 242 (310)
Q Consensus 174 ~~i~~~~~~~~~~~~~~~~~-~~-----~~~p~~i~~d~~G~-l~va~~~-~~~~~~~~i~~~~~~g~~~~~~~~~~ 242 (310)
+.|.+||..+.+... ++.. .. ...|..+++++||+ |||++.. ...+ ...+...++.+..++.|.
T Consensus 77 d~V~v~D~~t~~~~~-~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V----~VvD~~~~kvv~ei~vp~ 148 (352)
T TIGR02658 77 DYVEVIDPQTHLPIA-DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV----GVVDLEGKAFVRMMDVPD 148 (352)
T ss_pred CEEEEEECccCcEEe-EEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE----EEEECCCCcEEEEEeCCC
Confidence 999999987532110 1110 01 12355899999995 8888866 4543 455678889999888864
No 26
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=98.91 E-value=2.3e-08 Score=68.71 Aligned_cols=84 Identities=24% Similarity=0.365 Sum_probs=66.0
Q ss_pred cceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCce
Q 046018 96 NDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCR 175 (310)
Q Consensus 96 ~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~ 175 (310)
|+|+.-...+ +|+|+.+..-......++.+.+...+.|..||++ +.+.+..++..||||+++||++.|||++...+.
T Consensus 1 NDIvavG~~s-Fy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~~--~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~ 77 (86)
T PF01731_consen 1 NDIVAVGPDS-FYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDGK--EVKVVASGFSFANGIAISPDKKYLYVASSLAHS 77 (86)
T ss_pred CCEEEECcCc-EEEECchhhCcHHHHHHHHHhcCCCceEEEEeCC--EeEEeeccCCCCceEEEcCCCCEEEEEeccCCe
Confidence 3555444445 9999876433344556677777788889999984 577788899999999999999999999999999
Q ss_pred EEEEEcc
Q 046018 176 ILRFWLH 182 (310)
Q Consensus 176 i~~~~~~ 182 (310)
|++|...
T Consensus 78 I~vy~~~ 84 (86)
T PF01731_consen 78 IHVYKRH 84 (86)
T ss_pred EEEEEec
Confidence 9999754
No 27
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.87 E-value=9.3e-08 Score=85.77 Aligned_cols=251 Identities=14% Similarity=0.173 Sum_probs=132.7
Q ss_pred eEEEEEeccccccccCCCC---CccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcc
Q 046018 21 WTEFAVTTSQRKECVRPFA---PDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTND 97 (310)
Q Consensus 21 W~~~~~~~~~~~~~~~~~~---~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (310)
|...+..++...+.-+... .....+......+.+|. .|+|||++. +|++++|..+++.-+.... +....++.
T Consensus 136 w~~~~~~gV~~~d~lg~~~v~~~r~ll~d~~V~aLv~D~-~g~lWvgT~-dGL~~fd~~~gkalql~s~---~~dk~I~a 210 (671)
T COG3292 136 WLHASVIGVDSADALGREAVKDVRPLLKDTPVVALVFDA-NGRLWVGTP-DGLSYFDAGRGKALQLASP---PLDKAINA 210 (671)
T ss_pred hhccccCCccccccchhhhccCccccccCccceeeeeec-cCcEEEecC-CcceEEccccceEEEcCCC---cchhhHHH
Confidence 6655555555544322000 11122334455789998 999999955 4899999998876444322 11146788
Q ss_pred eEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccce----EEEecCCCeEEEEecCC
Q 046018 98 LDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANG----VALSRDRTFILIAETSN 173 (310)
Q Consensus 98 i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~g----i~~~~d~~~lyv~~~~~ 173 (310)
++.|..|+ +||++ +..++++++++-++.-. ....|.+ +.-+.+|. +|+...
T Consensus 211 l~~d~qg~-LWVGT-------------------dqGv~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~-lWiGTe-- 265 (671)
T COG3292 211 LIADVQGR-LWVGT-------------------DQGVYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE-LWIGTE-- 265 (671)
T ss_pred HHHHhcCc-EEEEe-------------------ccceEEEchhhcccccc--CCCCcchheeeeecccCCC-EEEeec--
Confidence 99999999 99998 44588888875333322 2233433 22233455 788632
Q ss_pred ceEEEEEccCCCCCcceeeee--CC-CCCCeeEECCCCCEEEEEecCCcc-----ceeeeeeccccccEEeeccc-hhhh
Q 046018 174 CRILRFWLHGPNSGKQDVFAE--LP-GFPDNVRSNSNGEFWVALHAKKGL-----FGKLILLNSWLGKTLLKLPL-SFRQ 244 (310)
Q Consensus 174 ~~i~~~~~~~~~~~~~~~~~~--~~-~~p~~i~~d~~G~l~va~~~~~~~-----~~~~i~~~~~~g~~~~~~~~-~~~~ 244 (310)
+.++++....+...- .... .+ .....+..|.+|++|++++.+.-. +..+....+.+|...+.... +...
T Consensus 266 nGl~r~~l~rq~Lq~--~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll 343 (671)
T COG3292 266 NGLWRTRLPRQGLQI--PLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALL 343 (671)
T ss_pred ccceeEecCCCCccc--cccccCCccccccceeeccCCCEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhc
Confidence 456666544221110 1111 11 123678999999999999875421 00000011111221111100 0000
Q ss_pred hcccccCCCCceEEEEECCCCCEEEEEEcCCCCeecceeEEE-EeCCEEEEecCCCCeEEEecc
Q 046018 245 LHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKTLSFISEVE-EKDGQLWMGSVLMPFIGIYNR 307 (310)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~-~~~g~l~vgs~~~~~i~~~~~ 307 (310)
.-..++......+.+.-+..|.++.....-.| .+++.++ ...+++|+|+. +++|.+++.
T Consensus 344 ~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg---~nit~~~~d~~g~lWlgs~-q~GLsrl~n 403 (671)
T COG3292 344 SWGVRQLNSIGELMVANGSTGELVRSVHQLRG---MNITTTLEDSRGRLWLGSM-QNGLSRLDN 403 (671)
T ss_pred ccceeeccccceEEEecCCCCcEEEEeeeccc---cccchhhhccCCcEEEEec-ccchhhhcc
Confidence 00112222222333333455666666544334 2355444 45899999998 667777653
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.87 E-value=1.2e-06 Score=80.84 Aligned_cols=173 Identities=13% Similarity=0.183 Sum_probs=115.6
Q ss_pred ccccCcEEEEEeCCCCC-eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEE
Q 046018 4 TGVADGRILKWQGDELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLAT 81 (310)
Q Consensus 4 ~~~~~~~i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~ 81 (310)
|+..|+.|..|+.-+.. .++ +........++.+.. .|+..++..-+| |..+|..-.+--
T Consensus 367 TG~eDgKVKvWn~~SgfC~vT------------------FteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 367 TGAEDGKVKVWNTQSGFCFVT------------------FTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNF 427 (893)
T ss_pred eccCCCcEEEEeccCceEEEE------------------eccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeeccccee
Confidence 55666677777765542 332 222336677899988 777777766655 777787654321
Q ss_pred EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEe
Q 046018 82 QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALS 160 (310)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~ 160 (310)
+.... +.-.....+++||.|. +.++.... .-.|+.|+.++|+..-+..+...| .+++++
T Consensus 428 RTft~---P~p~QfscvavD~sGe-lV~AG~~d----------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~ 487 (893)
T KOG0291|consen 428 RTFTS---PEPIQFSCVAVDPSGE-LVCAGAQD----------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFS 487 (893)
T ss_pred eeecC---CCceeeeEEEEcCCCC-EEEeeccc----------------eEEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence 12222 2223567899999999 88776431 346999999999887766666666 789999
Q ss_pred cCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCC-CEEEEEecCC
Q 046018 161 RDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNG-EFWVALHAKK 218 (310)
Q Consensus 161 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~va~~~~~ 218 (310)
|++. ++++.++..+|.+|+.-... +..+.+. .....-++.+.|+| .|-|++..+.
T Consensus 488 ~~~~-~LaS~SWDkTVRiW~if~s~-~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgq 543 (893)
T KOG0291|consen 488 PDGS-LLASGSWDKTVRIWDIFSSS-GTVETLE-IRSDVLAVSFRPDGKELAVATLDGQ 543 (893)
T ss_pred cccC-eEEeccccceEEEEEeeccC-ceeeeEe-eccceeEEEEcCCCCeEEEEEecce
Confidence 9999 67778999999999986431 1122221 11223578889999 6888887765
No 29
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.85 E-value=1.4e-07 Score=87.73 Aligned_cols=177 Identities=18% Similarity=0.260 Sum_probs=122.6
Q ss_pred eEEEEEeccccccccCCCCC-ccccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcce
Q 046018 21 WTEFAVTTSQRKECVRPFAP-DIEHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDL 98 (310)
Q Consensus 21 W~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i 98 (310)
|+|.++..|.+-+..+-..+ .+......|.|||+|....++|.++.- +.|-+...++...+.+... .+..|++|
T Consensus 1041 WtDv~g~SI~rasL~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~t----dLVNPR~i 1116 (1289)
T KOG1214|consen 1041 WTDVAGRSISRASLEGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYT----DLVNPRAI 1116 (1289)
T ss_pred EeecCCCccccccccCCCCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEee----cccCcceE
Confidence 99999988888765442222 223345789999999867789999876 4444434444333333332 35679999
Q ss_pred EEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE-ecCCcccceEEEecCCCeEEEEecCCceEE
Q 046018 99 DIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL-LQGLAFANGVALSRDRTFILIAETSNCRIL 177 (310)
Q Consensus 99 ~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~ 177 (310)
++|+-++.||.+++.. .+-.|-+.+.++...+++ .++..-|||+.|+|-.+.|.|++.+++++.
T Consensus 1117 v~D~~rgnLYwtDWnR---------------enPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LCWvDAGt~rle 1181 (1289)
T KOG1214|consen 1117 VVDPIRGNLYWTDWNR---------------ENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLCWVDAGTKRLE 1181 (1289)
T ss_pred EeecccCceeeccccc---------------cCCcceeeccCCccceEEeecccCCCCCceeCcccceeeEEecCCccee
Confidence 9998655599999542 133455556654434443 466788999999999998999999999999
Q ss_pred EEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCcc
Q 046018 178 RFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGL 220 (310)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~ 220 (310)
...+++. +....+..+ .+|.++.-+.+. +|..+|..+.+
T Consensus 1182 C~~p~g~--gRR~i~~~L-qYPF~itsy~~~-fY~TDWk~n~v 1220 (1289)
T KOG1214|consen 1182 CTLPDGT--GRRVIQNNL-QYPFSITSYADH-FYHTDWKRNGV 1220 (1289)
T ss_pred EecCCCC--cchhhhhcc-cCceeeeecccc-ceeeccccCce
Confidence 9988853 333333333 478899888766 99999987764
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.84 E-value=6.1e-07 Score=72.62 Aligned_cols=191 Identities=13% Similarity=0.097 Sum_probs=115.8
Q ss_pred CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEE
Q 046018 2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLAT 81 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~ 81 (310)
|||+..|+.++.|+.... .-+..........-+.+.+..++|++++-.+.|..+|.......
T Consensus 98 MyTgseDgt~kIWdlR~~------------------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 98 MYTGSEDGTVKIWDLRSL------------------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred EEecCCCceEEEEeccCc------------------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 577777777777776442 11222222234456888887889999987777999998876544
Q ss_pred EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE-Eec--CCcc----c
Q 046018 82 QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQ--GLAF----A 154 (310)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~--~~~~----~ 154 (310)
..... .....+..+++.+||. ..++.. ..|+.|.|+.-++.... +.+ .+.. .
T Consensus 160 ~~liP---e~~~~i~sl~v~~dgs-ml~a~n-----------------nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~i 218 (311)
T KOG0315|consen 160 HELIP---EDDTSIQSLTVMPDGS-MLAAAN-----------------NKGNCYVWRLLNHQTASELEPVHKFQAHNGHI 218 (311)
T ss_pred cccCC---CCCcceeeEEEcCCCc-EEEEec-----------------CCccEEEEEccCCCccccceEhhheecccceE
Confidence 33221 2234678899999999 555542 37889999875543222 111 1111 2
Q ss_pred ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCccceeeeeec-cccc
Q 046018 155 NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLN-SWLG 232 (310)
Q Consensus 155 ~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~-~~~g 232 (310)
--..++||+++| ++.+.+..+.+|+.++- . ..+...+ -.+....-+|+.||...|.....+. +... .+.+
T Consensus 219 l~C~lSPd~k~l-at~ssdktv~iwn~~~~-~-kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~-----~rlW~~~~~ 290 (311)
T KOG0315|consen 219 LRCLLSPDVKYL-ATCSSDKTVKIWNTDDF-F-KLELVLTGHQRWVWDCAFSADGEYLVTASSDHT-----ARLWDLSAG 290 (311)
T ss_pred EEEEECCCCcEE-EeecCCceEEEEecCCc-e-eeEEEeecCCceEEeeeeccCccEEEecCCCCc-----eeecccccC
Confidence 246789999954 45567789999998753 1 1121111 2245667889999987776655553 2332 3455
Q ss_pred cEEeecc
Q 046018 233 KTLLKLP 239 (310)
Q Consensus 233 ~~~~~~~ 239 (310)
+.+...+
T Consensus 291 k~v~qy~ 297 (311)
T KOG0315|consen 291 KEVRQYQ 297 (311)
T ss_pred ceeeecC
Confidence 5555443
No 31
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.81 E-value=5.7e-07 Score=83.75 Aligned_cols=142 Identities=15% Similarity=0.229 Sum_probs=104.8
Q ss_pred cceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
..-+.||.+|=++..+|.++... .|.+-..++++-+.++.. .+..|.+||+|.-++.+|.+++..+
T Consensus 1024 ~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~----~L~SPEGiAVDh~~Rn~ywtDS~lD--------- 1090 (1289)
T KOG1214|consen 1024 GSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNS----GLISPEGIAVDHIRRNMYWTDSVLD--------- 1090 (1289)
T ss_pred cceeeeeecccccceEEEeecCCCccccccccCCCCceeecc----cCCCccceeeeeccceeeeeccccc---------
Confidence 35677999997688899998874 588888887776666543 4568999999988888999996421
Q ss_pred hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeee-CCCCCCe
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAE-LPGFPDN 201 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~ 201 (310)
.=.|..+|-+ .+...+.+++..|.+|++++=++.|||++.. +..|..-+++|. ..+++.+ .-+.|+|
T Consensus 1091 ------~IevA~LdG~-~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~---NrRilin~DigLPNG 1160 (1289)
T KOG1214|consen 1091 ------KIEVALLDGS-ERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGE---NRRILINTDIGLPNG 1160 (1289)
T ss_pred ------hhheeecCCc-eeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCc---cceEEeecccCCCCC
Confidence 1135555543 2233356789999999999988889999864 458888888875 3455554 4478999
Q ss_pred eEECCCCCE
Q 046018 202 VRSNSNGEF 210 (310)
Q Consensus 202 i~~d~~G~l 210 (310)
+.+|+..++
T Consensus 1161 Ltfdpfs~~ 1169 (1289)
T KOG1214|consen 1161 LTFDPFSKL 1169 (1289)
T ss_pred ceeCcccce
Confidence 999998743
No 32
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=3.3e-06 Score=73.92 Aligned_cols=224 Identities=12% Similarity=0.152 Sum_probs=126.3
Q ss_pred EEEeCCCCc-EEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 52 IRFDKKTGD-LYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 52 l~~d~~~g~-l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
.++.+ +|. ..++.... =++.+|..+++++++-. +.+.+........+++++++|.+..
T Consensus 263 a~f~p-~G~~~i~~s~rrky~ysyDle~ak~~k~~~-~~g~e~~~~e~FeVShd~~fia~~G------------------ 322 (514)
T KOG2055|consen 263 AEFAP-NGHSVIFTSGRRKYLYSYDLETAKVTKLKP-PYGVEEKSMERFEVSHDSNFIAIAG------------------ 322 (514)
T ss_pred eeecC-CCceEEEecccceEEEEeeccccccccccC-CCCcccchhheeEecCCCCeEEEcc------------------
Confidence 55666 665 44433333 37888999988776632 2333334567889999999444332
Q ss_pred CCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC-CCCeeEECCCC
Q 046018 130 KTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG-FPDNVRSNSNG 208 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~G 208 (310)
..|.|+.+...++++-.-..-.+...+++|+.|++.||++ ...+.||+||+... .....+.+..+ .-..+|.+.+|
T Consensus 323 ~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~--~~~~rf~D~G~v~gts~~~S~ng 399 (514)
T KOG2055|consen 323 NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQN--SCLHRFVDDGSVHGTSLCISLNG 399 (514)
T ss_pred cCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEE-cCCceEEEEecCCc--ceEEEEeecCccceeeeeecCCC
Confidence 3677888877666543322223346789999999988876 56679999998743 12233433221 22457888888
Q ss_pred CEEEEEecCCccceeeeeeccccccEEeeccchhhhhccc-------ccCCCCc------------eEEEEECCCCCEEE
Q 046018 209 EFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSL-------LVGGKPH------------ATAIKLSEKGEVLE 269 (310)
Q Consensus 209 ~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~------------~~~~~~d~~g~~~~ 269 (310)
. |+|+.....+ |.+|+..-.+...-|.|.....++ .|....+ -.++-+ |.-.++.
T Consensus 400 ~-ylA~GS~~Gi----VNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-PS~TVFs 473 (514)
T KOG2055|consen 400 S-YLATGSDSGI----VNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-PSCTVFS 473 (514)
T ss_pred c-eEEeccCcce----EEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-cceeeec
Confidence 7 6666665554 666664444444444443332222 2221111 112222 2233444
Q ss_pred EEEcCCCCeecceeEEEEe--CCEEEEecCCCCeEEEec
Q 046018 270 VLEDCEGKTLSFISEVEEK--DGQLWMGSVLMPFIGIYN 306 (310)
Q Consensus 270 ~~~~~~g~~~~~~~~~~~~--~g~l~vgs~~~~~i~~~~ 306 (310)
+++.+ +.++..++.+... .|-|-||+- ..++-.++
T Consensus 474 NfP~~-n~~vg~vtc~aFSP~sG~lAvGNe-~grv~l~k 510 (514)
T KOG2055|consen 474 NFPTS-NTKVGHVTCMAFSPNSGYLAVGNE-AGRVHLFK 510 (514)
T ss_pred cCCCC-CCcccceEEEEecCCCceEEeecC-CCceeeEe
Confidence 44443 3445667766654 577777775 44454444
No 33
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.75 E-value=5.7e-06 Score=73.81 Aligned_cols=135 Identities=12% Similarity=0.173 Sum_probs=82.6
Q ss_pred CcEE-EEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE
Q 046018 59 GDLY-IADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK 136 (310)
Q Consensus 59 g~l~-v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~ 136 (310)
++|+ |+.... .|..+|.++.+....... +. .....+++++||+++|+++ .+|.|..
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~--~~--~~h~~~~~s~Dgr~~yv~~------------------rdg~vsv 62 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPT--GG--APHAGLKFSPDGRYLYVAN------------------RDGTVSV 62 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE---ST--TEEEEEE-TT-SSEEEEEE------------------TTSEEEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcC--CC--CceeEEEecCCCCEEEEEc------------------CCCeEEE
Confidence 3454 555554 489999988765333222 11 1134577899999999987 3688999
Q ss_pred EeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CC-----CCCCeeEECCCCC
Q 046018 137 YEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LP-----GFPDNVRSNSNGE 209 (310)
Q Consensus 137 ~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~-----~~p~~i~~d~~G~ 209 (310)
+|+.+.+..........|.++++++||+++|+++...+.+.++|..+.+ ....+.. .+ ..+.+|..++...
T Consensus 63 iD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle--~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~ 140 (369)
T PF02239_consen 63 IDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE--PVKTIPTGGMPVDGPESRVAAIVASPGRP 140 (369)
T ss_dssp EETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SSSS
T ss_pred EECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecccccc--ceeecccccccccccCCCceeEEecCCCC
Confidence 9998887665455567799999999999999999899999999976421 1111111 11 1123566666666
Q ss_pred EEEEEecC
Q 046018 210 FWVALHAK 217 (310)
Q Consensus 210 l~va~~~~ 217 (310)
.|+.+...
T Consensus 141 ~fVv~lkd 148 (369)
T PF02239_consen 141 EFVVNLKD 148 (369)
T ss_dssp EEEEEETT
T ss_pred EEEEEEcc
Confidence 66655543
No 34
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.74 E-value=3.8e-07 Score=76.16 Aligned_cols=190 Identities=10% Similarity=0.072 Sum_probs=98.0
Q ss_pred EEEEeCCCCC-e-EEEEEeccccccccCCCCCcccc-ccceeceEEEeCCCCcEEEEECCC-ceEEEeC--CCCeE----
Q 046018 11 ILKWQGDELG-W-TEFAVTTSQRKECVRPFAPDIEH-ICGRPLGIRFDKKTGDLYIADAYL-GFQVVGP--EGGLA---- 80 (310)
Q Consensus 11 i~~~~~~~~~-W-~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~--~~~~~---- 80 (310)
-..|+++.+. | |..+...+..++..++....+.. ..+-+.||+.-. ++.+.+++... .++.+.. .+..+
T Consensus 26 GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~ 104 (248)
T PF06977_consen 26 GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTTSLDRAD 104 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----TT--EEE
T ss_pred ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccccccchhh
Confidence 3556776665 4 22233444455555422222211 236688999987 77777777654 4666644 33322
Q ss_pred -EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeC--CCCeEEEEe--------c
Q 046018 81 -TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEK--TTKEVTILL--------Q 149 (310)
Q Consensus 81 -~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~--~~~~~~~~~--------~ 149 (310)
+.+.............+|+.|+.++++|++-.. .-..|+.++. ......... .
T Consensus 105 ~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~----------------~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 105 VQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER----------------KPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEEE---S---SS--EEEEEETTTTEEEEEEES----------------SSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred ceEEecccccCCCcceEEEEEcCCCCEEEEEeCC----------------CChhhEEEccccCccceeeccccccccccc
Confidence 111111111122346899999998879988532 2345777765 222222211 1
Q ss_pred CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC------CCCCCeeEECCCCCEEEEEecC
Q 046018 150 GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL------PGFPDNVRSNSNGEFWVALHAK 217 (310)
Q Consensus 150 ~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~~p~~i~~d~~G~l~va~~~~ 217 (310)
....+.+++++|..+.||+-+..+++|..+|.+|.......+.... -..|.||++|++|+|||+.-.+
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 2345889999999888999988999999999776422211111100 0258999999999999998543
No 35
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.73 E-value=3.2e-06 Score=77.65 Aligned_cols=182 Identities=13% Similarity=0.113 Sum_probs=105.2
Q ss_pred EEEeCCCCC--eEEEEE--eccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC---ceEEEeCCCCeEEEEE
Q 046018 12 LKWQGDELG--WTEFAV--TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL---GFQVVGPEGGLATQLV 84 (310)
Q Consensus 12 ~~~~~~~~~--W~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~---gi~~~d~~~~~~~~~~ 84 (310)
+.|.++.+. |+.... ..|+.+|..+.+...+....+.....+++++...|+++.... .|+.+|.++++.+++.
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt 302 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT 302 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc
Confidence 467776654 443322 235555655433222322223334678898333476554332 3999999988766553
Q ss_pred eecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCC
Q 046018 85 TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRT 164 (310)
Q Consensus 85 ~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~ 164 (310)
.. .......+++|||++|+++... .....|+.+|.++++.+.+..........+++|||+
T Consensus 303 ~~-----~~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~ 362 (448)
T PRK04792 303 RH-----RAIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGR 362 (448)
T ss_pred cC-----CCCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCC
Confidence 21 1134567889999977776532 123469999998887776543333334578999999
Q ss_pred eEEEEecCCc--eEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecC
Q 046018 165 FILIAETSNC--RILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAK 217 (310)
Q Consensus 165 ~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~ 217 (310)
.|+++....+ .|++++++++. ...+... .......++++|+ |+++...+
T Consensus 363 ~l~~~~~~~g~~~I~~~dl~~g~---~~~lt~~-~~d~~ps~spdG~~I~~~~~~~ 414 (448)
T PRK04792 363 SMIMVNRTNGKFNIARQDLETGA---MQVLTST-RLDESPSVAPNGTMVIYSTTYQ 414 (448)
T ss_pred EEEEEEecCCceEEEEEECCCCC---eEEccCC-CCCCCceECCCCCEEEEEEecC
Confidence 8888755433 67888877542 2222221 1112346888885 44444433
No 36
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.72 E-value=3.1e-07 Score=82.11 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=88.9
Q ss_pred ccccceeceEEEeCCCCcEEEEECCCceEEE-eCCC-----CeEEEEEeecCCc---cccCCcceEEeCCCCEEEEEeCC
Q 046018 43 EHICGRPLGIRFDKKTGDLYIADAYLGFQVV-GPEG-----GLATQLVTEAAGQ---PLRFTNDLDIDEHKGVIYFTDSS 113 (310)
Q Consensus 43 ~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~-d~~~-----~~~~~~~~~~~~~---~~~~~~~i~~d~~g~~l~v~~~~ 113 (310)
......|.||++.+ +| |||+... .|+++ +.++ ++.+.+....... ..+.++++++++||. ||++...
T Consensus 68 a~~l~~p~Gi~~~~-~G-lyV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~ 143 (367)
T TIGR02604 68 AEELSMVTGLAVAV-GG-VYVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGN 143 (367)
T ss_pred ecCCCCccceeEec-CC-EEEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEeccc
Confidence 44457899999988 77 9998644 58877 4432 1334454433221 245689999999999 9998753
Q ss_pred Cc--hhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEE
Q 046018 114 TS--FQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFW 180 (310)
Q Consensus 114 ~~--~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~ 180 (310)
.. ................|.++++++++++.+++..++..|+|++++++|+ +|+++.......+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~~~~~~i~ 211 (367)
T TIGR02604 144 TLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDDPPLCRVT 211 (367)
T ss_pred CCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCCCceeEEc
Confidence 21 1000000000011234789999999999999888899999999999987 899887665555554
No 37
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.72 E-value=4e-05 Score=65.24 Aligned_cols=158 Identities=11% Similarity=0.045 Sum_probs=96.9
Q ss_pred cceeceEEEeCCCCcEEEEECCCc--eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAYLG--FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~~g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
..+.|+++.++..+.+.+.-..-| ..++|+.+++.......+ ..-++--+-++++||++||.+....
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~--~gRHFyGHg~fs~dG~~LytTEnd~--------- 72 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAP--PGRHFYGHGVFSPDGRLLYTTENDY--------- 72 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCC--CCCEEecCEEEcCCCCEEEEecccc---------
Confidence 357789999984444333333333 788999999876554432 2234556789999999777665331
Q ss_pred hhhcCCCCceEEEEeCCCCeEEE---EecCCcccceEEEecCCCeEEEEecC-----------------CceEEEEEccC
Q 046018 124 SILSGDKTGRLLKYEKTTKEVTI---LLQGLAFANGVALSRDRTFILIAETS-----------------NCRILRFWLHG 183 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~~~---~~~~~~~~~gi~~~~d~~~lyv~~~~-----------------~~~i~~~~~~~ 183 (310)
....|.|-+||.. ..+++ +....-.|+.|.+.||++.|.|++-+ ...|..+|...
T Consensus 73 ----~~g~G~IgVyd~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~s 147 (305)
T PF07433_consen 73 ----ETGRGVIGVYDAA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARS 147 (305)
T ss_pred ----CCCcEEEEEEECc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCC
Confidence 2247789999987 33443 33456679999999999889998632 12222232221
Q ss_pred CCCCcceee-eeC-CCCCCeeEECCCCCEEEEEecCCc
Q 046018 184 PNSGKQDVF-AEL-PGFPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 184 ~~~~~~~~~-~~~-~~~p~~i~~d~~G~l~va~~~~~~ 219 (310)
+.+-....+ ... ...-.-++++++|.+|++....+.
T Consensus 148 G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~ 185 (305)
T PF07433_consen 148 GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGD 185 (305)
T ss_pred CceeeeeecCccccccceeeEEecCCCcEEEEEecCCC
Confidence 111000001 000 113456899999999999887654
No 38
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.72 E-value=9.1e-06 Score=71.59 Aligned_cols=158 Identities=19% Similarity=0.284 Sum_probs=94.3
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeec--CCccccCCcceEEeCC----CCEEEEEeCCC--chhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEA--AGQPLRFTNDLDIDEH----KGVIYFTDSST--SFQR 118 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~----g~~l~v~~~~~--~~~~ 118 (310)
..|.+|++.+ +|+|||++..+.|++++.++.....+.... .........+|+++|+ +. ||+..... ..
T Consensus 2 ~~P~~~a~~p-dG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~-lYv~~t~~~~~~-- 77 (331)
T PF07995_consen 2 NNPRSMAFLP-DGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGY-LYVYYTNADEDG-- 77 (331)
T ss_dssp SSEEEEEEET-TSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-E-EEEEEEEE-TSS--
T ss_pred CCceEEEEeC-CCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCE-EEEEEEcccCCC--
Confidence 4789999999 899999988666999885543313333321 1222345788999994 65 99887421 00
Q ss_pred hhhhhhhhcCCCCceEEEEeCCCC--e---EEEEecC-------CcccceEEEecCCCeEEEEec-------------CC
Q 046018 119 RQFMSSILSGDKTGRLLKYEKTTK--E---VTILLQG-------LAFANGVALSRDRTFILIAET-------------SN 173 (310)
Q Consensus 119 ~~~~~~~~~~~~~g~v~~~d~~~~--~---~~~~~~~-------~~~~~gi~~~~d~~~lyv~~~-------------~~ 173 (310)
.....+|.++..+.+ . .+.+... .....+|++.|||. ||++-- ..
T Consensus 78 ---------~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~~~~~ 147 (331)
T PF07995_consen 78 ---------GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDPNSLR 147 (331)
T ss_dssp ---------SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCSTTSST
T ss_pred ---------CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCccccccccccc
Confidence 011345777755433 2 2222211 22345799999994 999642 14
Q ss_pred ceEEEEEccCCCC----------CcceeeeeCCCCCCeeEECCC-CCEEEEEecCC
Q 046018 174 CRILRFWLHGPNS----------GKQDVFAELPGFPDNVRSNSN-GEFWVALHAKK 218 (310)
Q Consensus 174 ~~i~~~~~~~~~~----------~~~~~~~~~~~~p~~i~~d~~-G~l~va~~~~~ 218 (310)
++|.++++++... ...++++.--..|.++++|+. |+||++++...
T Consensus 148 G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~ 203 (331)
T PF07995_consen 148 GKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPD 203 (331)
T ss_dssp TEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SS
T ss_pred ceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCC
Confidence 6899999876410 122344432245788999999 99999997654
No 39
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.69 E-value=5.1e-06 Score=74.12 Aligned_cols=161 Identities=14% Similarity=0.196 Sum_probs=95.5
Q ss_pred ceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
.+++++++...+|++...+.|..+|+.+.++..-+.. ...|.++++++||+++|+++..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-----G~~~~~i~~s~DG~~~~v~n~~---------------- 98 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-----GGNPRGIAVSPDGKYVYVANYE---------------- 98 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------SSEEEEEEE--TTTEEEEEEEE----------------
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----CCCcceEEEcCCCCEEEEEecC----------------
Confidence 3567777333599997665699999998875332221 2368899999999988888743
Q ss_pred CCceEEEEeCCCCeEEEEecCC--------cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018 130 KTGRLLKYEKTTKEVTILLQGL--------AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDN 201 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~~~--------~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~ 201 (310)
.+.+..+|.++.+........ +...+|..++.+...+++....+.|+.+|....+. ...........|..
T Consensus 99 -~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-~~~~~i~~g~~~~D 176 (369)
T PF02239_consen 99 -PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-LKVTTIKVGRFPHD 176 (369)
T ss_dssp -TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-EEEEEEE--TTEEE
T ss_pred -CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-cceeeecccccccc
Confidence 678999998775543322111 22357777887774555656779999998764311 11112224457889
Q ss_pred eEECCCCCEE-EEEecCCccceeeeeeccccccEEee
Q 046018 202 VRSNSNGEFW-VALHAKKGLFGKLILLNSWLGKTLLK 237 (310)
Q Consensus 202 i~~d~~G~l~-va~~~~~~~~~~~i~~~~~~g~~~~~ 237 (310)
..+|++|+.+ ++.+..+.+ ...+..+++....
T Consensus 177 ~~~dpdgry~~va~~~sn~i----~viD~~~~k~v~~ 209 (369)
T PF02239_consen 177 GGFDPDGRYFLVAANGSNKI----AVIDTKTGKLVAL 209 (369)
T ss_dssp EEE-TTSSEEEEEEGGGTEE----EEEETTTTEEEEE
T ss_pred cccCcccceeeeccccccee----EEEeeccceEEEE
Confidence 9999999755 555555542 3344555555443
No 40
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.69 E-value=1.7e-05 Score=66.27 Aligned_cols=201 Identities=13% Similarity=0.167 Sum_probs=104.9
Q ss_pred cccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018 44 HICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 44 ~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~ 122 (310)
.....+.||+++++++.||++....+ |+.++.++..++++ .. .....+.+|+...++. +++++..
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i-~l---~g~~D~EgI~y~g~~~-~vl~~Er--------- 84 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRI-PL---DGFGDYEGITYLGNGR-YVLSEER--------- 84 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEE-E----SS-SSEEEEEE-STTE-EEEEETT---------
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEE-eC---CCCCCceeEEEECCCE-EEEEEcC---------
Confidence 33456889999997788999988754 99999876544433 22 1234688999988887 7777633
Q ss_pred hhhhcCCCCceEEEEeC--CCCeE-----EEEecC-----CcccceEEEecCCCeEEEEecCCc-eEEEEEccCCCCC-c
Q 046018 123 SSILSGDKTGRLLKYEK--TTKEV-----TILLQG-----LAFANGVALSRDRTFILIAETSNC-RILRFWLHGPNSG-K 188 (310)
Q Consensus 123 ~~~~~~~~~g~v~~~d~--~~~~~-----~~~~~~-----~~~~~gi~~~~d~~~lyv~~~~~~-~i~~~~~~~~~~~-~ 188 (310)
.+.++.++. .+... +.+.-+ ...-.|+++++.+++||++..... .|+.++....... .
T Consensus 85 --------~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~ 156 (248)
T PF06977_consen 85 --------DQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF 156 (248)
T ss_dssp --------TTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E
T ss_pred --------CCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee
Confidence 566666654 22211 112111 122469999999888988754433 5666664111000 0
Q ss_pred ce---eee-e--CCCCCCeeEECCC-CCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEE
Q 046018 189 QD---VFA-E--LPGFPDNVRSNSN-GEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKL 261 (310)
Q Consensus 189 ~~---~~~-~--~~~~p~~i~~d~~-G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (310)
.. .+. . .-.-|.++++++. |+||+-...+. +++.+
T Consensus 157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~--------------------------------------~l~~~ 198 (248)
T PF06977_consen 157 VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESR--------------------------------------LLLEL 198 (248)
T ss_dssp EEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTT--------------------------------------EEEEE
T ss_pred eccccccccccceeccccceEEcCCCCeEEEEECCCC--------------------------------------eEEEE
Confidence 00 011 0 1124677888765 46777654444 34566
Q ss_pred CCCCCEEEEEEcCCC-----CeecceeEEEE-eCCEEEEecCCCCeEEEe
Q 046018 262 SEKGEVLEVLEDCEG-----KTLSFISEVEE-KDGQLWMGSVLMPFIGIY 305 (310)
Q Consensus 262 d~~g~~~~~~~~~~g-----~~~~~~~~~~~-~~g~l~vgs~~~~~i~~~ 305 (310)
|.+|+++..+....| ..+.++-.++. .+|+||+.|= .+..++|
T Consensus 199 d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 199 DRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF 247 (248)
T ss_dssp -TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred CCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence 777777766654433 22345555553 4678888774 5555554
No 41
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=5.8e-06 Score=75.74 Aligned_cols=157 Identities=13% Similarity=0.084 Sum_probs=92.5
Q ss_pred cccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCC
Q 046018 29 SQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHK 104 (310)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g 104 (310)
+..++..+.+...+....+....+++++ +| .|+++.... .|+.+|.++++.+++... . ......+++|||
T Consensus 230 l~~~dl~~g~~~~l~~~~g~~~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~---~--~~~~~~~~spDG 303 (433)
T PRK04922 230 IYVQDLATGQRELVASFRGINGAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNH---F--GIDTEPTWAPDG 303 (433)
T ss_pred EEEEECCCCCEEEeccCCCCccCceECC-CCCEEEEEEeCCCCceEEEEECCCCCeEECccC---C--CCccceEECCCC
Confidence 4445554432222222223334678888 55 465543332 399999998876654321 1 123467899999
Q ss_pred CEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC--ceEEEEEcc
Q 046018 105 GVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN--CRILRFWLH 182 (310)
Q Consensus 105 ~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~ 182 (310)
++|+++... .....|+.++.++++.+.+.........++++|||+.++++.... ..|++++++
T Consensus 304 ~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 304 KSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred CEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 977776532 112359999988777766543333344689999999887764432 368899886
Q ss_pred CCCCCcceeeeeCCCCCCeeEECCCCCE
Q 046018 183 GPNSGKQDVFAELPGFPDNVRSNSNGEF 210 (310)
Q Consensus 183 ~~~~~~~~~~~~~~~~p~~i~~d~~G~l 210 (310)
++. ...+... .......++++|+.
T Consensus 369 ~g~---~~~Lt~~-~~~~~p~~spdG~~ 392 (433)
T PRK04922 369 TGS---VRTLTPG-SLDESPSFAPNGSM 392 (433)
T ss_pred CCC---eEECCCC-CCCCCceECCCCCE
Confidence 542 2223221 12345688999973
No 42
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.62 E-value=2.6e-06 Score=78.84 Aligned_cols=148 Identities=11% Similarity=0.019 Sum_probs=98.3
Q ss_pred ccceeceEEEeCCCCcEEEEECC--Cc--eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018 45 ICGRPLGIRFDKKTGDLYIADAY--LG--FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120 (310)
Q Consensus 45 ~~~~p~gl~~d~~~g~l~v~~~~--~g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~ 120 (310)
..+.|..++++++.+.+|++... .+ +..++............ ..--+..++|++.|+.
T Consensus 233 Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni--------~~iea~vkdGK~~~V~---------- 294 (635)
T PRK02888 233 VDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI--------ARIEEAVKAGKFKTIG---------- 294 (635)
T ss_pred eCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch--------HHHHHhhhCCCEEEEC----------
Confidence 44688899999955567777532 22 55555543332222211 0011344577766663
Q ss_pred hhhhhhcCCCCceEEEEeCCC-----CeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCC------CCcc
Q 046018 121 FMSSILSGDKTGRLLKYEKTT-----KEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPN------SGKQ 189 (310)
Q Consensus 121 ~~~~~~~~~~~g~v~~~d~~~-----~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~------~~~~ 189 (310)
.+.|..+|..+ .++.........|.|+.++|||+++|+++..+..|.++|....+ +...
T Consensus 295 ----------gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 295 ----------GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred ----------CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCcc
Confidence 45789999876 24444556778899999999999999999999999999986421 1111
Q ss_pred e-eeee--CCCCCCeeEECCCCCEEEEEecCCcc
Q 046018 190 D-VFAE--LPGFPDNVRSNSNGEFWVALHAKKGL 220 (310)
Q Consensus 190 ~-~~~~--~~~~p~~i~~d~~G~l~va~~~~~~~ 220 (310)
. +..+ +...|-..++|.+|+.|++.+-..++
T Consensus 365 ~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv 398 (635)
T PRK02888 365 DAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQI 398 (635)
T ss_pred ceEEEeeccCCCcceEEECCCCCEEEeEeeccee
Confidence 1 2233 33468889999999999999887763
No 43
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.59 E-value=4.6e-05 Score=64.13 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=94.5
Q ss_pred ceeceEEEeCCCCcEEEEEC-CCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADA-YLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~-~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
..+..+.+++ +++++++.. .+.|..+|.++++....... ....+..++++++++ ++++..
T Consensus 94 ~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~-~l~~~~------------- 154 (289)
T cd00200 94 SYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRG----HTDWVNSVAFSPDGT-FVASSS------------- 154 (289)
T ss_pred CcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEecc----CCCcEEEEEEcCcCC-EEEEEc-------------
Confidence 3567888988 677777766 44588888886554332221 122477899999988 555542
Q ss_pred hcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS 204 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 204 (310)
.++.+..||..+++...... .......++++|+++.++++. ..+.|.+|+...... ...+.........+++
T Consensus 155 ----~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 155 ----QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS-SDGTIKLWDLSTGKC--LGTLRGHENGVNSVAF 227 (289)
T ss_pred ----CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec-CCCcEEEEECCCCce--ecchhhcCCceEEEEE
Confidence 26779999987554433222 233567899999998677764 478999999864211 1112112234577899
Q ss_pred CCCCCEEEEEecCCc
Q 046018 205 NSNGEFWVALHAKKG 219 (310)
Q Consensus 205 d~~G~l~va~~~~~~ 219 (310)
++++.++++....+.
T Consensus 228 ~~~~~~~~~~~~~~~ 242 (289)
T cd00200 228 SPDGYLLASGSEDGT 242 (289)
T ss_pred cCCCcEEEEEcCCCc
Confidence 998888877763443
No 44
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.58 E-value=6.3e-06 Score=74.55 Aligned_cols=167 Identities=14% Similarity=0.194 Sum_probs=99.6
Q ss_pred cccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeec---CCccccCCcceEEeCCC------CEEEEEe
Q 046018 42 IEHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEA---AGQPLRFTNDLDIDEHK------GVIYFTD 111 (310)
Q Consensus 42 ~~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~---~~~~~~~~~~i~~d~~g------~~l~v~~ 111 (310)
+..-...|.+|++.+ +|+|||+... +.|.+++..++..+.+.... .......+.+|+++|+= ++||++-
T Consensus 25 va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsy 103 (454)
T TIGR03606 25 LLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISY 103 (454)
T ss_pred EECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEE
Confidence 344457899999999 8999999884 56999987765443332221 11123457899998762 3589885
Q ss_pred CCCchhhhhhhhhhhcCCCCceEEEEeCCC--Ce---EEEEecCC-----cccceEEEecCCCeEEEEecC---------
Q 046018 112 SSTSFQRRQFMSSILSGDKTGRLLKYEKTT--KE---VTILLQGL-----AFANGVALSRDRTFILIAETS--------- 172 (310)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~~---~~~~~~~~-----~~~~gi~~~~d~~~lyv~~~~--------- 172 (310)
+...-.. ......+|.++..+. .. .+.+.... .....|+|.|||+ ||++.-.
T Consensus 104 t~~~~~~--------~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~g~~~~~n~ 174 (454)
T TIGR03606 104 TYKNGDK--------ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQGRNQGANF 174 (454)
T ss_pred eccCCCC--------CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCCCCCCcccc
Confidence 3210000 000134677765431 11 12232222 2245799999997 9985322
Q ss_pred -----------------------CceEEEEEccCCCC-C-------cceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018 173 -----------------------NCRILRFWLHGPNS-G-------KQDVFAELPGFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 173 -----------------------~~~i~~~~~~~~~~-~-------~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~ 218 (310)
.++|.|+++++.-. . ..++++---..|.++++|++|+||++++...
T Consensus 175 ~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 175 FLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQGPN 251 (454)
T ss_pred cCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCCEEEEecCCC
Confidence 23688888876310 0 1123333225688999999999999988654
No 45
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.57 E-value=0.00027 Score=59.35 Aligned_cols=168 Identities=15% Similarity=0.101 Sum_probs=97.0
Q ss_pred EEEEEeccccccccCCCCCcccccc-ceeceEEEeCCCC-cEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceE
Q 046018 22 TEFAVTTSQRKECVRPFAPDIEHIC-GRPLGIRFDKKTG-DLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLD 99 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~~g-~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~ 99 (310)
+......+..++............. .....+.+.+ ++ .|+++...+.|..++.++++....... ....+..+.
T Consensus 26 ~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~----~~~~i~~~~ 100 (289)
T cd00200 26 TGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTG----HTSYVSSVA 100 (289)
T ss_pred EeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEec----cCCcEEEEE
Confidence 3333445555555442211111111 2334788888 55 555555555588888876533222221 112467888
Q ss_pred EeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEE
Q 046018 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILR 178 (310)
Q Consensus 100 ~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~ 178 (310)
++++++ ++++... .+.+..||..+++...... .......++++|+++. +++...++.|..
T Consensus 101 ~~~~~~-~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~~~~i~i 161 (289)
T cd00200 101 FSPDGR-ILSSSSR-----------------DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF-VASSSQDGTIKL 161 (289)
T ss_pred EcCCCC-EEEEecC-----------------CCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCE-EEEEcCCCcEEE
Confidence 999988 6666532 6789999987655444333 2334678999999774 444455789999
Q ss_pred EEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEe
Q 046018 179 FWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALH 215 (310)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~ 215 (310)
|+...... ...+.........+.++++|+ ++++..
T Consensus 162 ~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 162 WDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred EEcccccc--ceeEecCccccceEEECCCcCEEEEecC
Confidence 99864311 122222223457889999984 555544
No 46
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=1.8e-05 Score=72.53 Aligned_cols=175 Identities=10% Similarity=0.086 Sum_probs=102.7
Q ss_pred EEEeCCCCC--eEEEE--EeccccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEE
Q 046018 12 LKWQGDELG--WTEFA--VTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQL 83 (310)
Q Consensus 12 ~~~~~~~~~--W~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~ 83 (310)
+.|.+|.+. ++... ...+..++..+.....+....+.....++++ +| .|+++.... .|+.+|.+++..+++
T Consensus 207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~L 285 (435)
T PRK05137 207 PRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGTTTRL 285 (435)
T ss_pred eEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECC-CCCEEEEEEecCCCceEEEEECCCCceEEc
Confidence 456665443 22211 1345555655433222222223445678888 66 455544332 399999998877655
Q ss_pred EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCC
Q 046018 84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDR 163 (310)
Q Consensus 84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~ 163 (310)
... . ......+++|||++|+++... .....|+.+|.+++..+.+...........++|||
T Consensus 286 t~~---~--~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG 345 (435)
T PRK05137 286 TDS---P--AIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRG 345 (435)
T ss_pred cCC---C--CccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECCCC
Confidence 322 1 123457899999977776532 12346999999887777665433334557899999
Q ss_pred CeEEEEecCC--ceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEE
Q 046018 164 TFILIAETSN--CRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFW 211 (310)
Q Consensus 164 ~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~ 211 (310)
+.|+++.... ..|++++++++. ...+.. ........+++||+..
T Consensus 346 ~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~-~~~~~~p~~spDG~~i 391 (435)
T PRK05137 346 DLIAFTKQGGGQFSIGVMKPDGSG---ERILTS-GFLVEGPTWAPNGRVI 391 (435)
T ss_pred CEEEEEEcCCCceEEEEEECCCCc---eEeccC-CCCCCCCeECCCCCEE
Confidence 9887765433 478888876432 222222 1234567889999643
No 47
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.55 E-value=4e-05 Score=70.13 Aligned_cols=178 Identities=11% Similarity=0.095 Sum_probs=103.6
Q ss_pred EEEEeCCCCC--eEEEE--EeccccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEE
Q 046018 11 ILKWQGDELG--WTEFA--VTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQ 82 (310)
Q Consensus 11 i~~~~~~~~~--W~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~ 82 (310)
-+.|.++... ++... ...+..++..+.+...+....+....+++++ +| .|+++.... .|+.+|.++++.++
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~~ 281 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIRQ 281 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 4667776654 33221 1234444544432222222223344678999 55 466554432 39999999887765
Q ss_pred EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecC
Q 046018 83 LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD 162 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d 162 (310)
+... . ......+++|||++|+++.... ..-.||.++.+++..+.+..........+++||
T Consensus 282 lt~~---~--~~~~~~~wSPDG~~I~f~s~~~---------------g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD 341 (429)
T PRK03629 282 VTDG---R--SNNTEPTWFPDSQNLAYTSDQA---------------GRPQVYKVNINGGAPQRITWEGSQNQDADVSSD 341 (429)
T ss_pred ccCC---C--CCcCceEECCCCCEEEEEeCCC---------------CCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence 5322 1 1345688999999776665321 133699999988777665433333456889999
Q ss_pred CCeEEEEecCC--ceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEE
Q 046018 163 RTFILIAETSN--CRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVA 213 (310)
Q Consensus 163 ~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va 213 (310)
|+.++++.... ..|++++++++. ...+... ..-....+++||+..+.
T Consensus 342 G~~Ia~~~~~~g~~~I~~~dl~~g~---~~~Lt~~-~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 342 GKFMVMVSSNGGQQHIAKQDLATGG---VQVLTDT-FLDETPSIAPNGTMVIY 390 (429)
T ss_pred CCEEEEEEccCCCceEEEEECCCCC---eEEeCCC-CCCCCceECCCCCEEEE
Confidence 99887654433 468888877542 2333221 11235678899964443
No 48
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.53 E-value=0.00012 Score=67.23 Aligned_cols=141 Identities=12% Similarity=0.108 Sum_probs=87.8
Q ss_pred eeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 48 RPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 48 ~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
.....++++ +| .|+.+.... .|+++|.++++.+++... .+ .....+++|||+.|+++.+.
T Consensus 205 ~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-~g----~~~~~~~SpDG~~l~~~~s~---------- 268 (433)
T PRK04922 205 PILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRELVASF-RG----INGAPSFSPDGRRLALTLSR---------- 268 (433)
T ss_pred ccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-CC----CccCceECCCCCEEEEEEeC----------
Confidence 344678888 55 465554332 389999988876555322 11 23467899999877766432
Q ss_pred hhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018 124 SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPDN 201 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~ 201 (310)
.....|+.+|.++++.+.+..........+++||++.|+++... ...|+.++.+++. .+.+.........
T Consensus 269 -----~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt~~g~~~~~ 340 (433)
T PRK04922 269 -----DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AERLTFQGNYNAR 340 (433)
T ss_pred -----CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEeecCCCCccC
Confidence 12346999999988877654433333567899999988776433 3468888876532 2222211223346
Q ss_pred eEECCCCCEEE
Q 046018 202 VRSNSNGEFWV 212 (310)
Q Consensus 202 i~~d~~G~l~v 212 (310)
..++++|+..+
T Consensus 341 ~~~SpDG~~Ia 351 (433)
T PRK04922 341 ASVSPDGKKIA 351 (433)
T ss_pred EEECCCCCEEE
Confidence 78999996433
No 49
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=3.4e-05 Score=70.56 Aligned_cols=164 Identities=10% Similarity=0.082 Sum_probs=93.9
Q ss_pred cccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCC
Q 046018 29 SQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHK 104 (310)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g 104 (310)
+..+|..+.+...+....+.....++++ +| .|+++.... .|+.+|.+++..+++... . .......++|||
T Consensus 222 I~~~dl~~g~~~~l~~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~---~--~~~~~~~wSpDG 295 (427)
T PRK02889 222 VYVHDLATGRRRVVANFKGSNSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS---S--GIDTEPFFSPDG 295 (427)
T ss_pred EEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEEccCCCceEEEEECCCCCcEECCCC---C--CCCcCeEEcCCC
Confidence 5555654432222222223445678998 55 565554432 388889887765544221 1 123456899999
Q ss_pred CEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC--ceEEEEEcc
Q 046018 105 GVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN--CRILRFWLH 182 (310)
Q Consensus 105 ~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~ 182 (310)
++|+++... ...-.|+.++.+++..+.+..........+++|||+.++++.... ..|++++.+
T Consensus 296 ~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 296 RSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred CEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECC
Confidence 977776532 113468888887776665543222233578999999887664433 268899887
Q ss_pred CCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecC
Q 046018 183 GPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAK 217 (310)
Q Consensus 183 ~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~ 217 (310)
++. ...+... .......++++|+ |+++...+
T Consensus 361 ~g~---~~~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 361 TGQ---VTALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CCC---eEEccCC-CCccCceECCCCCEEEEEEecC
Confidence 542 2222221 1235678899996 44444333
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=8.2e-05 Score=62.34 Aligned_cols=163 Identities=13% Similarity=0.064 Sum_probs=105.5
Q ss_pred cceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
......|.+.| .+..++....+ .|..+|.+..+.+.+... ..+.-.|+||+|- +++....
T Consensus 100 ~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------~~~pi~AfDp~GL-ifA~~~~----------- 160 (311)
T KOG1446|consen 100 KKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------SGRPIAAFDPEGL-IFALANG----------- 160 (311)
T ss_pred CceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEec------CCCcceeECCCCc-EEEEecC-----------
Confidence 35677899999 66788887765 477888886655444322 2355688999996 6655532
Q ss_pred hhcCCCCceEEEEeCC---CCeEEEEe---cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee---C
Q 046018 125 ILSGDKTGRLLKYEKT---TKEVTILL---QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---L 195 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~---~~~~~~~~---~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~ 195 (310)
...|..||.. .|-++.+. +....-+.|.++|||+.|+++ +.++.++.+|.-.+.. ...+.. .
T Consensus 161 ------~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLls-T~~s~~~~lDAf~G~~--~~tfs~~~~~ 231 (311)
T KOG1446|consen 161 ------SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLS-TNASFIYLLDAFDGTV--KSTFSGYPNA 231 (311)
T ss_pred ------CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEE-eCCCcEEEEEccCCcE--eeeEeeccCC
Confidence 3367777753 23344432 223345799999999988887 6678888888643321 122222 2
Q ss_pred CCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeeccch
Q 046018 196 PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLPLS 241 (310)
Q Consensus 196 ~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~~ 241 (310)
...|-..++.|||++.++....+. +..++ ..|+.+.....+
T Consensus 232 ~~~~~~a~ftPds~Fvl~gs~dg~-----i~vw~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLSGSDDGT-----IHVWNLETGKKVAVLRGP 273 (311)
T ss_pred CCcceeEEECCCCcEEEEecCCCc-----EEEEEcCCCcEeeEecCC
Confidence 235667889999999888877665 55554 566666665443
No 51
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.50 E-value=4e-05 Score=70.19 Aligned_cols=180 Identities=11% Similarity=0.106 Sum_probs=102.0
Q ss_pred EEEeCCCCC--eEEEEE--eccccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEE
Q 046018 12 LKWQGDELG--WTEFAV--TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQL 83 (310)
Q Consensus 12 ~~~~~~~~~--W~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~ 83 (310)
+.|.++.+. ++.... ..|..++..+...+.+....+.....++++ +| .|++..... .|+.+|.++++.+.+
T Consensus 204 p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~~~l 282 (430)
T PRK00178 204 PRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQLSRV 282 (430)
T ss_pred eeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECC-CCCEEEEEEccCCCceEEEEECCCCCeEEc
Confidence 356665543 332221 234445554432222222223334678888 55 565554432 399999998877655
Q ss_pred EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCC
Q 046018 84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDR 163 (310)
Q Consensus 84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~ 163 (310)
... . .......++|||+.|+++... .....|+.++.++++.+.+...........++||+
T Consensus 283 t~~-~----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg 342 (430)
T PRK00178 283 TNH-P----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADG 342 (430)
T ss_pred ccC-C----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECCCC
Confidence 321 1 123456789999878777532 12346999998888776654332233456899999
Q ss_pred CeEEEEecCCc--eEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEE-EEEec
Q 046018 164 TFILIAETSNC--RILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFW-VALHA 216 (310)
Q Consensus 164 ~~lyv~~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~-va~~~ 216 (310)
+.++++....+ .|+++|++++. ...+... .......++++|+.. ++...
T Consensus 343 ~~i~~~~~~~~~~~l~~~dl~tg~---~~~lt~~-~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 343 KTLVMVHRQDGNFHVAAQDLQRGS---VRILTDT-SLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CEEEEEEccCCceEEEEEECCCCC---EEEccCC-CCCCCceECCCCCEEEEEEec
Confidence 98887754333 58888877542 2333221 122345788898644 34433
No 52
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.49 E-value=7.3e-06 Score=79.93 Aligned_cols=79 Identities=11% Similarity=0.206 Sum_probs=54.0
Q ss_pred eccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCC
Q 046018 27 TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKG 105 (310)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~ 105 (310)
..+.|.+|.+ .......-.|..++..+ +|.|||++.. =|.|+-+++... .+.... ......-.-||++| +|.
T Consensus 348 R~veC~~C~G---~a~~~~L~aPvala~a~-DGSl~VGDfN-yIRRI~~dg~v~-tIl~L~-~t~~sh~Yy~AvsPvdgt 420 (1899)
T KOG4659|consen 348 RDVECPKCEG---KADSISLFAPVALAYAP-DGSLIVGDFN-YIRRISQDGQVS-TILTLG-LTDTSHSYYIAVSPVDGT 420 (1899)
T ss_pred ccccCCCCCC---ccccceeeceeeEEEcC-CCcEEEccch-heeeecCCCceE-EEEEec-CCCccceeEEEecCcCce
Confidence 3455667777 44444556789999999 9999999876 378887876543 444432 12223456799998 677
Q ss_pred EEEEEeCC
Q 046018 106 VIYFTDSS 113 (310)
Q Consensus 106 ~l~v~~~~ 113 (310)
||+++..
T Consensus 421 -lyvSdp~ 427 (1899)
T KOG4659|consen 421 -LYVSDPL 427 (1899)
T ss_pred -EEecCCC
Confidence 9999864
No 53
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=0.00021 Score=65.55 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=88.8
Q ss_pred ceeceEEEeCCCCc-EEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018 47 GRPLGIRFDKKTGD-LYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 47 ~~p~gl~~d~~~g~-l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~ 122 (310)
......++++ +|+ |..+... ..|+.+|..+++.+++... .+ .....+++|||++|+++...
T Consensus 202 ~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g----~~~~~~~SPDG~~la~~~~~--------- 266 (435)
T PRK05137 202 SLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRELVGNF-PG----MTFAPRFSPDGRKVVMSLSQ--------- 266 (435)
T ss_pred CCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-CC----cccCcEECCCCCEEEEEEec---------
Confidence 3445688888 554 5444332 2499999988876555322 11 23467899999877766532
Q ss_pred hhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCC
Q 046018 123 SSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPD 200 (310)
Q Consensus 123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~ 200 (310)
.....|+.+|.+++..+.+..........+++|||+.|+++... ...|++++.+++. .+.+....+...
T Consensus 267 ------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---~~~lt~~~~~~~ 337 (435)
T PRK05137 267 ------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---PRRISFGGGRYS 337 (435)
T ss_pred ------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---eEEeecCCCccc
Confidence 12456999999888777665433334568899999988766433 3479999877542 222322222234
Q ss_pred eeEECCCCCEEE
Q 046018 201 NVRSNSNGEFWV 212 (310)
Q Consensus 201 ~i~~d~~G~l~v 212 (310)
...++++|+..+
T Consensus 338 ~~~~SpdG~~ia 349 (435)
T PRK05137 338 TPVWSPRGDLIA 349 (435)
T ss_pred CeEECCCCCEEE
Confidence 567889996433
No 54
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.45 E-value=0.00026 Score=64.74 Aligned_cols=141 Identities=10% Similarity=0.091 Sum_probs=88.7
Q ss_pred eeceEEEeCCCCc-EEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 48 RPLGIRFDKKTGD-LYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 48 ~p~gl~~d~~~g~-l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
.....+++| +|+ |.++... ..|+.++.++++.+.+... .+ ....++++|||++|+++...
T Consensus 200 ~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~----~~~~~~~SPDG~~La~~~~~---------- 263 (429)
T PRK03629 200 PLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPDGSKLAFALSK---------- 263 (429)
T ss_pred ceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC----CcCCeEECCCCCEEEEEEcC----------
Confidence 445788999 664 4433322 2388889888876555322 11 23468999999978876532
Q ss_pred hhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018 124 SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPDN 201 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~ 201 (310)
.....|+.+|.++++.+.+..........+|+|||+.|+++... ...||+++++++. ...+.........
T Consensus 264 -----~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---~~~lt~~~~~~~~ 335 (429)
T PRK03629 264 -----TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQD 335 (429)
T ss_pred -----CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---eEEeecCCCCccC
Confidence 11335999999988877665444445678999999987655332 2478888877542 2223222223346
Q ss_pred eEECCCCCEEE
Q 046018 202 VRSNSNGEFWV 212 (310)
Q Consensus 202 i~~d~~G~l~v 212 (310)
..+++||+..+
T Consensus 336 ~~~SpDG~~Ia 346 (429)
T PRK03629 336 ADVSSDGKFMV 346 (429)
T ss_pred EEECCCCCEEE
Confidence 78899996443
No 55
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.45 E-value=0.00023 Score=59.98 Aligned_cols=233 Identities=14% Similarity=0.112 Sum_probs=129.4
Q ss_pred CccccccceeceEEEeCCCCcEEEEECCCc-eEEEeCC--C--C-eEEEEEeec--CC-ccccCCcceEEeCCCCEEEEE
Q 046018 40 PDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPE--G--G-LATQLVTEA--AG-QPLRFTNDLDIDEHKGVIYFT 110 (310)
Q Consensus 40 ~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~--~--~-~~~~~~~~~--~~-~~~~~~~~i~~d~~g~~l~v~ 110 (310)
++...-...|.||++.+ .+-+||++...+ ...+|.+ + + ........+ .+ .....|.++++..... +-|+
T Consensus 16 ~~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~-F~vt 93 (336)
T TIGR03118 16 QIVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT-FVVS 93 (336)
T ss_pred cccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc-eEEc
Confidence 34444557899999999 889999999866 3333433 1 1 111112221 11 1123577777765544 4333
Q ss_pred eCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE------EEEecC--CcccceEEEecC--CCeEEEEecCCceEEEEE
Q 046018 111 DSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV------TILLQG--LAFANGVALSRD--RTFILIAETSNCRILRFW 180 (310)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~------~~~~~~--~~~~~gi~~~~d--~~~lyv~~~~~~~i~~~~ 180 (310)
.....- ...++....+|.|..|.+.-+.. ..+... ..--.|+++... +.+||.++..+++|-+||
T Consensus 94 ~~g~~~-----~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 94 GEGITG-----PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred CCCccc-----ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 311000 00011123477888887643322 122111 112358888754 568999999999999998
Q ss_pred ccCCCCCcceeeee--CC--CCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCce
Q 046018 181 LHGPNSGKQDVFAE--LP--GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHA 256 (310)
Q Consensus 181 ~~~~~~~~~~~~~~--~~--~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 256 (310)
-.-.+......+.+ +| ..|.+|.-- .|+|||+--.... .++ . .+.+...+
T Consensus 169 ~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~-----------~~~--d------------~v~G~G~G 222 (336)
T TIGR03118 169 GSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDA-----------DRN--D------------EVAGAGLG 222 (336)
T ss_pred CccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCC-----------ccc--c------------cccCCCcc
Confidence 54221111112222 22 246677443 4788887543221 100 0 01233345
Q ss_pred EEEEECCCCCEEEEEEcCCCCeecceeEEEE-------eCCEEEEecCCCCeEEEecc
Q 046018 257 TAIKLSEKGEVLEVLEDCEGKTLSFISEVEE-------KDGQLWMGSVLMPFIGIYNR 307 (310)
Q Consensus 257 ~~~~~d~~g~~~~~~~~~~g~~~~~~~~~~~-------~~g~l~vgs~~~~~i~~~~~ 307 (310)
.+-.+|.+|++++.+.. +..++.+=.++. ..+.|.||++.+.+|..||.
T Consensus 223 ~VdvFd~~G~l~~r~as--~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~ 278 (336)
T TIGR03118 223 YVNVFTLNGQLLRRVAS--SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDP 278 (336)
T ss_pred eEEEEcCCCcEEEEecc--CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecC
Confidence 66678999999998853 334555543332 36899999999999999984
No 56
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.45 E-value=1.1e-05 Score=71.01 Aligned_cols=130 Identities=18% Similarity=0.175 Sum_probs=72.0
Q ss_pred cceeceEEEeCC---CCcEEEEECCC---------ceEEEeCCCC--eE---EEEEee-cC-CccccCCcceEEeCCCCE
Q 046018 46 CGRPLGIRFDKK---TGDLYIADAYL---------GFQVVGPEGG--LA---TQLVTE-AA-GQPLRFTNDLDIDEHKGV 106 (310)
Q Consensus 46 ~~~p~gl~~d~~---~g~l~v~~~~~---------gi~~~d~~~~--~~---~~~~~~-~~-~~~~~~~~~i~~d~~g~~ 106 (310)
.....||+++++ ++.||++.... .|.|+..+.+ .+ +.+... +. ....+....|+++|||.
T Consensus 48 ~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~- 126 (331)
T PF07995_consen 48 ERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK- 126 (331)
T ss_dssp TBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-
T ss_pred cCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-
Confidence 367889999982 48999988732 3777644333 22 223222 22 23446677899999997
Q ss_pred EEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCC-------------eEEEEecCCcccceEEEecCCCeEEEEecCC
Q 046018 107 IYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTK-------------EVTILLQGLAFANGVALSRDRTFILIAETSN 173 (310)
Q Consensus 107 l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~-------------~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~ 173 (310)
||++.-...... ...-.....|.|+++++++. ..++++.++..|.+++|+|....||+++.+.
T Consensus 127 LYvs~G~~~~~~----~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~ 202 (331)
T PF07995_consen 127 LYVSVGDGGNDD----NAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP 202 (331)
T ss_dssp EEEEEB-TTTGG----GGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred EEEEeCCCCCcc----cccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence 999974321100 00001223677888887643 2345566777788888888833488887654
Q ss_pred ---ceEEEEE
Q 046018 174 ---CRILRFW 180 (310)
Q Consensus 174 ---~~i~~~~ 180 (310)
..|.++.
T Consensus 203 ~~~dein~i~ 212 (331)
T PF07995_consen 203 DGWDEINRIE 212 (331)
T ss_dssp SSSEEEEEE-
T ss_pred CCCcEEEEec
Confidence 3455543
No 57
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.43 E-value=0.00041 Score=57.45 Aligned_cols=149 Identities=9% Similarity=0.116 Sum_probs=97.2
Q ss_pred cceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
.....++++.+ +|+..++..-++ +..+|..+++.++.... .....-++++++|.+ -.++.+.
T Consensus 63 sH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~G----H~~dVlsva~s~dn~-qivSGSr----------- 125 (315)
T KOG0279|consen 63 SHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVG----HTKDVLSVAFSTDNR-QIVSGSR----------- 125 (315)
T ss_pred ceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEe----cCCceEEEEecCCCc-eeecCCC-----------
Confidence 34566888988 888777766666 55569888765443322 122467899999998 6666543
Q ss_pred hhcCCCCceEEEEeCCCCeEEEEecC--CcccceEEEecCC-CeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTILLQG--LAFANGVALSRDR-TFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDN 201 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~~~~--~~~~~gi~~~~d~-~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~ 201 (310)
+..+..||..++-.-++... -...+.+.|+|.. ...+++.+..+.|.+||.++-+. ...+..-.++.+-
T Consensus 126 ------DkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t 197 (315)
T KOG0279|consen 126 ------DKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNT 197 (315)
T ss_pred ------cceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEE
Confidence 77888999875433333333 2346899999985 44566667888999999875322 1112222245577
Q ss_pred eEECCCCCEEEEEecCCc
Q 046018 202 VRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 202 i~~d~~G~l~va~~~~~~ 219 (310)
+++++||.+-++...+++
T Consensus 198 ~~vSpDGslcasGgkdg~ 215 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDGE 215 (315)
T ss_pred EEECCCCCEEecCCCCce
Confidence 899999998777544443
No 58
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.43 E-value=0.00016 Score=65.81 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=105.2
Q ss_pred EEEEeCCCCC--eE-EEE--EeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC---ceEEEeCCCCeEEE
Q 046018 11 ILKWQGDELG--WT-EFA--VTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL---GFQVVGPEGGLATQ 82 (310)
Q Consensus 11 i~~~~~~~~~--W~-~~~--~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~---gi~~~d~~~~~~~~ 82 (310)
-+.|.++.+. ++ ... ...++.+|..+.+.+.+....+......++++..+|.+..... .|+.+|.+++..++
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~ 271 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ 271 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence 4678887663 32 332 2345556765544333333323333456888333566554432 39999998887766
Q ss_pred EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecC
Q 046018 83 LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD 162 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d 162 (310)
+.... . .-....++|||++|+++.... ....|+++|.++++.+.+..... .+ ..++||
T Consensus 272 LT~~~-~----~d~~p~~SPDG~~I~F~Sdr~---------------g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPD 329 (419)
T PRK04043 272 ITNYP-G----IDVNGNFVEDDKRIVFVSDRL---------------GYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTY 329 (419)
T ss_pred cccCC-C----ccCccEECCCCCEEEEEECCC---------------CCceEEEEECCCCCeEeCccCCC-cC-ceECCC
Confidence 53321 1 112347999998899887431 23479999999888866543221 22 489999
Q ss_pred CCeEEEEecCC--------ceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEec
Q 046018 163 RTFILIAETSN--------CRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHA 216 (310)
Q Consensus 163 ~~~lyv~~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~ 216 (310)
|+.+.++.... ..|++++++++. .+.+... +.-....++|||+ |+++...
T Consensus 330 G~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 330 KNYIVYSSRETNNEFGKNTFNLYLISTNSDY---IRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred CCEEEEEEcCCCcccCCCCcEEEEEECCCCC---eEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 99876654432 478888887542 2333221 1123467889986 5455443
No 59
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.43 E-value=1.7e-05 Score=77.52 Aligned_cols=174 Identities=24% Similarity=0.338 Sum_probs=107.1
Q ss_pred eEEEEEeccccc----cccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEee----------
Q 046018 21 WTEFAVTTSQRK----ECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTE---------- 86 (310)
Q Consensus 21 W~~~~~~~~~~~----~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~---------- 86 (310)
|--.++.|-.|. .|.... ....-....|.||++|+ .|.||+++.. .|..+|.++ .+..+...
T Consensus 446 ~evvaG~Ge~Clp~desCGDGa-lA~dA~L~~PkGIa~dk-~g~lYfaD~t-~IR~iD~~g-iIstlig~~~~~~~p~~C 521 (1899)
T KOG4659|consen 446 YEVVAGDGEVCLPADESCGDGA-LAQDAQLIFPKGIAFDK-MGNLYFADGT-RIRVIDTTG-IISTLIGTTPDQHPPRTC 521 (1899)
T ss_pred eeEEeccCcCccccccccCcch-hcccceeccCCceeEcc-CCcEEEeccc-EEEEeccCc-eEEEeccCCCCccCcccc
Confidence 654555555554 232211 12233446799999999 9999999765 477777653 33333221
Q ss_pred c-----CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec------------
Q 046018 87 A-----AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ------------ 149 (310)
Q Consensus 87 ~-----~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~------------ 149 (310)
. ....+.-|.++|++|-.+.+||-+ ++-|+++++. +++.++..
T Consensus 522 ~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld-------------------~nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~ 581 (1899)
T KOG4659|consen 522 AQITKLVDLQLEWPTSLAVDPMDNSLLVLD-------------------TNVVLRITVV-HRVRIILGRPTHCDLANATS 581 (1899)
T ss_pred ccccchhheeeecccceeecCCCCeEEEee-------------------cceEEEEccC-ccEEEEcCCccccccCCCch
Confidence 0 112345699999999655599998 5567777765 34443321
Q ss_pred ---------CCcccceEEEecCCCeEEEEecCCceEEEEEc---cC-------CCC-------Ccceeee------e--C
Q 046018 150 ---------GLAFANGVALSRDRTFILIAETSNCRILRFWL---HG-------PNS-------GKQDVFA------E--L 195 (310)
Q Consensus 150 ---------~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~---~~-------~~~-------~~~~~~~------~--~ 195 (310)
.+..+..|+++++|. |||+++..++|-++.. ++ .+. ....++. . .
T Consensus 582 ~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~ 660 (1899)
T KOG4659|consen 582 SASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAK 660 (1899)
T ss_pred hhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccc
Confidence 122356899999997 9999998776655543 21 100 0011111 1 0
Q ss_pred CCCCCeeEECCCCCEEEEEecCCc
Q 046018 196 PGFPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 196 ~~~p~~i~~d~~G~l~va~~~~~~ 219 (310)
-..|..+|+.|||.+++|+..+..
T Consensus 661 lnsp~alaVsPdg~v~IAD~gN~r 684 (1899)
T KOG4659|consen 661 LNSPYALAVSPDGDVIIADSGNSR 684 (1899)
T ss_pred cCCcceEEECCCCcEEEecCCchh
Confidence 136889999999999999987754
No 60
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.42 E-value=4.2e-05 Score=65.82 Aligned_cols=154 Identities=18% Similarity=0.291 Sum_probs=94.1
Q ss_pred ceeceEEEeCCC-----CcEEEEECC-CceEEEeCCCCeEEEEEeecC------------Cccc---cCCcceEEeC---
Q 046018 47 GRPLGIRFDKKT-----GDLYIADAY-LGFQVVGPEGGLATQLVTEAA------------GQPL---RFTNDLDIDE--- 102 (310)
Q Consensus 47 ~~p~gl~~d~~~-----g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~------------~~~~---~~~~~i~~d~--- 102 (310)
.....|++|..+ +.+|+++.. .||.++|..+++..++..... +... ....+++.++
T Consensus 61 s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~ 140 (287)
T PF03022_consen 61 SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISP 140 (287)
T ss_dssp GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTST
T ss_pred cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCC
Confidence 455678888733 479999998 579999999988777654310 0011 1134566654
Q ss_pred CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeC---CC----------CeEEEEecCCcccceEEEecCCCeEEEE
Q 046018 103 HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEK---TT----------KEVTILLQGLAFANGVALSRDRTFILIA 169 (310)
Q Consensus 103 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~---~~----------~~~~~~~~~~~~~~gi~~~~d~~~lyv~ 169 (310)
+|++||+.... ...+|++.. .+ ..++.+........|++++++|. ||++
T Consensus 141 d~r~LYf~~ls-----------------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~ 202 (287)
T PF03022_consen 141 DGRWLYFHPLS-----------------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFT 202 (287)
T ss_dssp TS-EEEEEETT------------------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEE
T ss_pred CccEEEEEeCC-----------------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEe
Confidence 77778887643 223554421 00 12233333345678999999876 9999
Q ss_pred ecCCceEEEEEccCCCC-CcceeeeeCC---CCCCeeEECC--CCCEEEEEecCC
Q 046018 170 ETSNCRILRFWLHGPNS-GKQDVFAELP---GFPDNVRSNS--NGEFWVALHAKK 218 (310)
Q Consensus 170 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~---~~p~~i~~d~--~G~l~va~~~~~ 218 (310)
+...+.|.++++++... ...+.+...+ .+|+++.+++ +|.||+..+.-.
T Consensus 203 ~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~ 257 (287)
T PF03022_consen 203 DVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQ 257 (287)
T ss_dssp ECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--
T ss_pred cCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECcch
Confidence 99999999999886321 2334444433 4899999999 999999987644
No 61
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=0.00026 Score=65.11 Aligned_cols=142 Identities=11% Similarity=0.041 Sum_probs=87.5
Q ss_pred ceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 50 LGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 50 ~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
....+++ +| .|+++.... .|+.+|.++++.+.+... .+ .....+++|||++|+++...
T Consensus 221 ~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-~g----~~~~~~wSPDG~~La~~~~~------------ 282 (448)
T PRK04792 221 MSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-PG----INGAPRFSPDGKKLALVLSK------------ 282 (448)
T ss_pred cCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-CC----CcCCeeECCCCCEEEEEEeC------------
Confidence 4578888 55 454443332 389999988876554322 11 22367899999978776432
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPDNVR 203 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~ 203 (310)
.....|+.+|.++++.+.+..........+|+||++.|+++... ...|++++.++++ ...+...........
T Consensus 283 ---~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~~~Lt~~g~~~~~~~ 356 (448)
T PRK04792 283 ---DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---VSRLTFEGEQNLGGS 356 (448)
T ss_pred ---CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEEecCCCCCcCee
Confidence 12346999999888777655433344567899999988776433 3578888876542 222221112233467
Q ss_pred ECCCCC-EEEEEe
Q 046018 204 SNSNGE-FWVALH 215 (310)
Q Consensus 204 ~d~~G~-l~va~~ 215 (310)
+++||+ |+++..
T Consensus 357 ~SpDG~~l~~~~~ 369 (448)
T PRK04792 357 ITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCCEEEEEEe
Confidence 899995 444433
No 62
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.41 E-value=0.00034 Score=57.07 Aligned_cols=150 Identities=10% Similarity=0.055 Sum_probs=95.6
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
.....|.+.+ +++..++.....|..+|.+++...++.... ........+.+..+|+++|-+.
T Consensus 41 sqVNrLeiTp-dk~~LAaa~~qhvRlyD~~S~np~Pv~t~e--~h~kNVtaVgF~~dgrWMyTgs--------------- 102 (311)
T KOG0315|consen 41 SQVNRLEITP-DKKDLAAAGNQHVRLYDLNSNNPNPVATFE--GHTKNVTAVGFQCDGRWMYTGS--------------- 102 (311)
T ss_pred cceeeEEEcC-CcchhhhccCCeeEEEEccCCCCCceeEEe--ccCCceEEEEEeecCeEEEecC---------------
Confidence 5667788888 555555444445777787776543443321 1223456677888999555443
Q ss_pred cCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018 127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS 206 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 206 (310)
.+|.+-.||...-.++.........|.+.+.|....|++++ .++.|++||+....-. .++..+..-....+.+.+
T Consensus 103 ---eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d-qsg~irvWDl~~~~c~-~~liPe~~~~i~sl~v~~ 177 (311)
T KOG0315|consen 103 ---EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD-QSGNIRVWDLGENSCT-HELIPEDDTSIQSLTVMP 177 (311)
T ss_pred ---CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec-CCCcEEEEEccCCccc-cccCCCCCcceeeEEEcC
Confidence 37888889987655555444445568999999877788774 5689999998643111 111211112336789999
Q ss_pred CCCEEEEEecCCc
Q 046018 207 NGEFWVALHAKKG 219 (310)
Q Consensus 207 ~G~l~va~~~~~~ 219 (310)
||...+|.+..+.
T Consensus 178 dgsml~a~nnkG~ 190 (311)
T KOG0315|consen 178 DGSMLAAANNKGN 190 (311)
T ss_pred CCcEEEEecCCcc
Confidence 9988888766554
No 63
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.40 E-value=7.7e-05 Score=67.94 Aligned_cols=164 Identities=15% Similarity=0.144 Sum_probs=96.1
Q ss_pred cccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCC
Q 046018 29 SQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHK 104 (310)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g 104 (310)
+..++..+.....+.........+++++ +| .|+++.... .|+.++.+++..+.+... . ......+++++|
T Consensus 216 i~v~d~~~g~~~~~~~~~~~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~---~--~~~~~~~~s~dg 289 (417)
T TIGR02800 216 IYVQDLATGQREKVASFPGMNGAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG---P--GIDTEPSWSPDG 289 (417)
T ss_pred EEEEECCCCCEEEeecCCCCccceEECC-CCCEEEEEECCCCCccEEEEECCCCCEEECCCC---C--CCCCCEEECCCC
Confidence 4445554422122222223344678888 55 566654432 399999988776554321 1 112356788999
Q ss_pred CEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC--ceEEEEEcc
Q 046018 105 GVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN--CRILRFWLH 182 (310)
Q Consensus 105 ~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~ 182 (310)
++|+++.... ....|+.++.++++.+.+.........++++||++.++++.... ..|+.++++
T Consensus 290 ~~l~~~s~~~---------------g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 290 KSIAFTSDRG---------------GSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred CEEEEEECCC---------------CCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 8777665321 23469999998877766654444556788999999888775543 378888876
Q ss_pred CCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecC
Q 046018 183 GPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAK 217 (310)
Q Consensus 183 ~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~ 217 (310)
++ ....+... .......+.++|+ |+++...+
T Consensus 355 ~~---~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 355 GG---GERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CC---CeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 53 22222221 1234457888885 44444443
No 64
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.40 E-value=0.00031 Score=58.54 Aligned_cols=240 Identities=15% Similarity=0.106 Sum_probs=125.8
Q ss_pred cceeceEEEeCCCCc-EEEEECCCc--eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018 46 CGRPLGIRFDKKTGD-LYIADAYLG--FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~-l~v~~~~~g--i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~ 122 (310)
..+-|||+++|...+ +.++ ..-| .+.||+++.+..+...... .-++--+-++++||+.||.|...++
T Consensus 67 paR~Hgi~~~p~~~ravafA-RrPGtf~~vfD~~~~~~pv~~~s~~--~RHfyGHGvfs~dG~~LYATEndfd------- 136 (366)
T COG3490 67 PARGHGIAFHPALPRAVAFA-RRPGTFAMVFDPNGAQEPVTLVSQE--GRHFYGHGVFSPDGRLLYATENDFD------- 136 (366)
T ss_pred ccccCCeecCCCCcceEEEE-ecCCceEEEECCCCCcCcEEEeccc--CceeecccccCCCCcEEEeecCCCC-------
Confidence 356778998884443 3333 2223 6678998876544433322 2344556788999998888765432
Q ss_pred hhhhcCCCCceEEEEeCCCCeEEEEe---cCCcccceEEEecCCCeEEEEecC-----------------CceEEEEEcc
Q 046018 123 SSILSGDKTGRLLKYEKTTKEVTILL---QGLAFANGVALSRDRTFILIAETS-----------------NCRILRFWLH 182 (310)
Q Consensus 123 ~~~~~~~~~g~v~~~d~~~~~~~~~~---~~~~~~~gi~~~~d~~~lyv~~~~-----------------~~~i~~~~~~ 182 (310)
...|-|-.||.. ..++.+. .-...|+.+.+.+||+.|.+++-+ ..++..++..
T Consensus 137 ------~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a 209 (366)
T COG3490 137 ------PNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA 209 (366)
T ss_pred ------CCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc
Confidence 134556678765 3454432 334569999999999988877531 1122222211
Q ss_pred CCCCCcceeee-eC-CCCCCeeEECCCCCEEEEEecCCcc-ceeeeeeccccccEEeeccchhhhhcc------cccCCC
Q 046018 183 GPNSGKQDVFA-EL-PGFPDNVRSNSNGEFWVALHAKKGL-FGKLILLNSWLGKTLLKLPLSFRQLHS------LLVGGK 253 (310)
Q Consensus 183 ~~~~~~~~~~~-~~-~~~p~~i~~d~~G~l~va~~~~~~~-~~~~i~~~~~~g~~~~~~~~~~~~~~~------~~~~~~ 253 (310)
.+.+-++..+. .+ .....-+..+.||.+|.++...+.. -.-.+.-....|+.+..++.|.+.... ......
T Consensus 210 tG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~ 289 (366)
T COG3490 210 TGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR 289 (366)
T ss_pred ccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc
Confidence 11111111111 00 0234668999999999998765431 000011112344555555555432111 111123
Q ss_pred CceEEEEECCCCCEEEEEEcCCCCeec-----ceeEEEEeCCEEEEecCCCCeEE
Q 046018 254 PHATAIKLSEKGEVLEVLEDCEGKTLS-----FISEVEEKDGQLWMGSVLMPFIG 303 (310)
Q Consensus 254 ~~~~~~~~d~~g~~~~~~~~~~g~~~~-----~~~~~~~~~g~l~vgs~~~~~i~ 303 (310)
...++...+|.|+...++.-..|.... ....+....+-+-+.|. ..+|.
T Consensus 290 ~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~daaGva~~~~gf~vssg-~G~~~ 343 (366)
T COG3490 290 RDGLVALTSPRGNRAVIWDAATGAVVSEAALPDAAGVAAAKGGFAVSSG-QGRII 343 (366)
T ss_pred cCCeEEEecCCCCeEEEEEcCCCcEEecccccccccceeccCceEEecC-CceEE
Confidence 345555567888887777654554322 12233344455555554 44444
No 65
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.39 E-value=3.2e-05 Score=71.77 Aligned_cols=160 Identities=16% Similarity=0.127 Sum_probs=101.7
Q ss_pred ceEEEeCCCCcEEEEECCC--ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 50 LGIRFDKKTGDLYIADAYL--GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 50 ~gl~~d~~~g~l~v~~~~~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
.-+++|+ .|.|.++.... .|+.++.++|++.-+.....+ -+.+++++|.|. +.++.+.
T Consensus 439 scvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEg----PVs~l~f~~~~~-~LaS~SW-------------- 498 (893)
T KOG0291|consen 439 SCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEG----PVSGLSFSPDGS-LLASGSW-------------- 498 (893)
T ss_pred eEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCC----cceeeEEccccC-eEEeccc--------------
Confidence 3588999 89988887764 499999999976433222111 246789999999 6666543
Q ss_pred CCCCceEEEEeC--CCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcce-------------e
Q 046018 128 GDKTGRLLKYEK--TTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQD-------------V 191 (310)
Q Consensus 128 ~~~~g~v~~~d~--~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~-------------~ 191 (310)
+.+|-.||. ..++.+++. -....-++++.|||+.|-|+ +-++.|..||.... +.+..+ .
T Consensus 499 ---DkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVa-TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~ 573 (893)
T KOG0291|consen 499 ---DKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVA-TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR 573 (893)
T ss_pred ---cceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEE-EecceEEEEEhhhceeeccccchhhccccccccce
Confidence 556766664 234565543 23345689999999988887 66789999998632 221111 1
Q ss_pred eee---CC-CCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeec
Q 046018 192 FAE---LP-GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL 238 (310)
Q Consensus 192 ~~~---~~-~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~ 238 (310)
+.. .. ..-..+++++||...+|....+.+ ..+.-+++.+++++
T Consensus 574 ~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~i----CiY~v~~~vllkkf 620 (893)
T KOG0291|consen 574 ITAENSAKGKTFTTICYSADGKCILAGGESNSI----CIYDVPEGVLLKKF 620 (893)
T ss_pred eehhhcccCCceEEEEEcCCCCEEEecCCcccE----EEEECchhheeeeE
Confidence 110 00 112458999999988887665542 23334566666554
No 66
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=9.7e-05 Score=67.62 Aligned_cols=175 Identities=14% Similarity=0.175 Sum_probs=99.3
Q ss_pred EEEeCCCCC--eEEEEE--eccccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCC---ceEEEeCCCCeEEEE
Q 046018 12 LKWQGDELG--WTEFAV--TTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYL---GFQVVGPEGGLATQL 83 (310)
Q Consensus 12 ~~~~~~~~~--W~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~---gi~~~d~~~~~~~~~ 83 (310)
+.|.++.+. ++.... ..+..+|..+.....+....+....+++++ +|+ |.++.... .|+.+|.+++..+++
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGTPSQL 287 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECC-CCCEEEEEEecCCcEEEEEEECCCCCeEee
Confidence 456665543 332211 235555655432222222223444688999 664 55554333 388889888776555
Q ss_pred EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCC
Q 046018 84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDR 163 (310)
Q Consensus 84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~ 163 (310)
... .......+++|||++|+++... ...-.|+.++..++..+.+. .. . ...+++|||
T Consensus 288 t~~-----~~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l~-~~-~-~~~~~SpDG 344 (429)
T PRK01742 288 TSG-----AGNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLVG-GR-G-YSAQISADG 344 (429)
T ss_pred ccC-----CCCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEec-CC-C-CCccCCCCC
Confidence 321 1135678999999977776532 12346888887766555442 11 1 346799999
Q ss_pred CeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEec
Q 046018 164 TFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHA 216 (310)
Q Consensus 164 ~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~ 216 (310)
+.++++.. ..++++|..++. ...+... .......++++|++.+....
T Consensus 345 ~~ia~~~~--~~i~~~Dl~~g~---~~~lt~~-~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 345 KTLVMING--DNVVKQDLTSGS---TEVLSST-FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred CEEEEEcC--CCEEEEECCCCC---eEEecCC-CCCCCceECCCCCEEEEEEc
Confidence 98877643 578888876432 2222111 11245678999976555443
No 67
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.35 E-value=0.00059 Score=62.45 Aligned_cols=140 Identities=12% Similarity=0.072 Sum_probs=85.0
Q ss_pred eceEEEeCCCC-cEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 49 PLGIRFDKKTG-DLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 49 p~gl~~d~~~g-~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
....+++| +| .|+++.... .|+.+|..+++.+++... .+ .....+++|||+.|+++...
T Consensus 198 v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-~g----~~~~~~~SPDG~~la~~~~~----------- 260 (427)
T PRK02889 198 IISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-KG----SNSAPAWSPDGRTLAVALSR----------- 260 (427)
T ss_pred cccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-CC----CccceEECCCCCEEEEEEcc-----------
Confidence 34678888 55 555554432 389999988876655322 11 23468899999877776432
Q ss_pred hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec--CCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET--SNCRILRFWLHGPNSGKQDVFAELPGFPDNV 202 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i 202 (310)
.....||.+|.+++..+.+..........+|+|||+.|+++.. +...||.++.+++. .+.+..........
T Consensus 261 ----~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~---~~~lt~~g~~~~~~ 333 (427)
T PRK02889 261 ----DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA---AQRVTFTGSYNTSP 333 (427)
T ss_pred ----CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc---eEEEecCCCCcCce
Confidence 1234699999887766655433323345789999998876543 23467777765432 22222111223356
Q ss_pred EECCCCCEEE
Q 046018 203 RSNSNGEFWV 212 (310)
Q Consensus 203 ~~d~~G~l~v 212 (310)
.++++|+..+
T Consensus 334 ~~SpDG~~Ia 343 (427)
T PRK02889 334 RISPDGKLLA 343 (427)
T ss_pred EECCCCCEEE
Confidence 7899996433
No 68
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.33 E-value=0.00057 Score=62.25 Aligned_cols=143 Identities=14% Similarity=0.130 Sum_probs=86.8
Q ss_pred eceEEEeCCCCc-EEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 49 PLGIRFDKKTGD-LYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 49 p~gl~~d~~~g~-l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
....++++ +|+ |+++.... .|+.+|..+++.+.+... .+ ....++++|+|+.|+++...
T Consensus 192 ~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~----~~~~~~~spDg~~l~~~~~~----------- 254 (417)
T TIGR02800 192 ILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PG----MNGAPAFSPDGSKLAVSLSK----------- 254 (417)
T ss_pred eecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CC----CccceEECCCCCEEEEEECC-----------
Confidence 44567888 554 55444332 388899988765544321 11 23457899999878776532
Q ss_pred hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPDNV 202 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i 202 (310)
.....|+.++..++..+.+...........++||++.|+++... ...|+.++.+++. ...+..........
T Consensus 255 ----~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~~~~~~~~ 327 (417)
T TIGR02800 255 ----DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFRGGYNASP 327 (417)
T ss_pred ----CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccCe
Confidence 12346999999887766554332223356899999988665432 3479998877532 22222222334567
Q ss_pred EECCCCCEEEEEe
Q 046018 203 RSNSNGEFWVALH 215 (310)
Q Consensus 203 ~~d~~G~l~va~~ 215 (310)
.++++|+..+...
T Consensus 328 ~~spdg~~i~~~~ 340 (417)
T TIGR02800 328 SWSPDGDLIAFVH 340 (417)
T ss_pred EECCCCCEEEEEE
Confidence 8899996554443
No 69
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.00082 Score=61.19 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=86.1
Q ss_pred ceEEEeCCCCc--EEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 50 LGIRFDKKTGD--LYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 50 ~gl~~d~~~g~--l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
....+++ +|+ +|++.... .|+.+|..+++.+++... .+ ......++|||+.+.++...
T Consensus 191 ~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-~g----~~~~~~~SPDG~~la~~~~~----------- 253 (419)
T PRK04043 191 IFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-QG----MLVVSDVSKDGSKLLLTMAP----------- 253 (419)
T ss_pred EeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-CC----cEEeeEECCCCCEEEEEEcc-----------
Confidence 3577888 554 66555442 399999999987766432 11 12235689999878777642
Q ss_pred hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPDNV 202 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i 202 (310)
.....|+.+|.++++.+.+...........++|||+.|+++... ...|++++.+++.. +.+... +. .+.
T Consensus 254 ----~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~---~rlt~~-g~-~~~ 324 (419)
T PRK04043 254 ----KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV---EQVVFH-GK-NNS 324 (419)
T ss_pred ----CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe---EeCccC-CC-cCc
Confidence 12567999999888777665333222345799999988776533 33899998876422 222211 11 235
Q ss_pred EECCCCCEEE
Q 046018 203 RSNSNGEFWV 212 (310)
Q Consensus 203 ~~d~~G~l~v 212 (310)
.++++|+..+
T Consensus 325 ~~SPDG~~Ia 334 (419)
T PRK04043 325 SVSTYKNYIV 334 (419)
T ss_pred eECCCCCEEE
Confidence 7899996443
No 70
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=98.26 E-value=0.00018 Score=65.24 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=101.9
Q ss_pred cccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCcccc----ccceeceEEEeCCCCcEEEEECCCceEEEeCCCC
Q 046018 5 GVADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEH----ICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGG 78 (310)
Q Consensus 5 ~~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~ 78 (310)
.+-.++|...-.|.++ |++++ .|+.++.......+.... ......++..|. +|.||+.+.. +|.++....-
T Consensus 243 ~lp~~~I~ll~qD~qG~lWiGTe-nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~-dGsLWv~t~~-giv~~~~a~w 319 (671)
T COG3292 243 MLPSGNILLLVQDAQGELWIGTE-NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDT-DGSLWVGTYG-GIVRYLTADW 319 (671)
T ss_pred CCcchheeeeecccCCCEEEeec-ccceeEecCCCCccccccccCCccccccceeecc-CCCEeeeccC-ceEEEecchh
Confidence 3456678888888887 99655 446655322211111111 113456899999 9999999776 4555533221
Q ss_pred -eEEEEEeecCCccccCCcceEEeC---CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cCCc
Q 046018 79 -LATQLVTEAAGQPLRFTNDLDIDE---HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QGLA 152 (310)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~i~~d~---~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~ 152 (310)
.+..+... .+.... -.+..+ +.. ++..++ .|.+...+..+|...... -...
T Consensus 320 ~~ma~in~~-dG~v~~---~~~~a~~ll~~~-v~~~ns------------------~g~L~van~stG~~v~sv~q~Rg~ 376 (671)
T COG3292 320 KRMAVINDS-DGGVSQ---YEAVAPALLSWG-VRQLNS------------------IGELMVANGSTGELVRSVHQLRGM 376 (671)
T ss_pred hheeeeecC-CCchhh---hhccCchhcccc-eeeccc------------------cceEEEecCCCCcEEEEeeecccc
Confidence 11112221 111111 111222 222 555442 455666777666543322 1223
Q ss_pred ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee---CC-CCCCeeEECCCCCEEEEEecCCccceeeeeec
Q 046018 153 FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---LP-GFPDNVRSNSNGEFWVALHAKKGLFGKLILLN 228 (310)
Q Consensus 153 ~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~~-~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~ 228 (310)
...-..++.+++ +|+. +.++.|.+++... ....+.+ ++ .....|..|++++||+++..+- +.+.
T Consensus 377 nit~~~~d~~g~-lWlg-s~q~GLsrl~n~n----~~avlde~agl~ss~V~aived~dnsLWIGTs~Gl------vk~~ 444 (671)
T COG3292 377 NITTTLEDSRGR-LWLG-SMQNGLSRLDNKN----EWAVLDEDAGLPSSEVSAIVEDPDNSLWIGTSGGL------VKRD 444 (671)
T ss_pred ccchhhhccCCc-EEEE-ecccchhhhccCC----cccccccccCCcccceeeeeecCCCCEEEeccCCe------EecC
Confidence 334455666666 8887 5567888887553 1112222 22 2235688899999999997765 4445
Q ss_pred cccccE
Q 046018 229 SWLGKT 234 (310)
Q Consensus 229 ~~~g~~ 234 (310)
++.++.
T Consensus 445 pe~~~v 450 (671)
T COG3292 445 PESGRV 450 (671)
T ss_pred ccccch
Confidence 444443
No 71
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=0.0014 Score=60.06 Aligned_cols=141 Identities=11% Similarity=0.130 Sum_probs=86.1
Q ss_pred eceEEEeCCCCcEEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 49 PLGIRFDKKTGDLYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
.....++++...|..+... ..|++++.++++.+.+... .+ .....+++|||++|+++...
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-~g----~~~~~~~SpDG~~la~~~~~------------ 263 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-EG----LNGAPAWSPDGSKLAFVLSK------------ 263 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-CC----CcCCeEECCCCCEEEEEEcc------------
Confidence 4567888833355444333 2389999998876555321 11 23357899999877766532
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGFPDNVR 203 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~ 203 (310)
.....|+.+|.++++.+.+...........++||++.++++... ...|++++.+++. ...+...........
T Consensus 264 ---~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~---~~~lt~~~~~~~~~~ 337 (430)
T PRK00178 264 ---DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR---AERVTFVGNYNARPR 337 (430)
T ss_pred ---CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEeecCCCCccceE
Confidence 12346999999988777655433334457899999988776432 3478888876542 222221112233467
Q ss_pred ECCCCCEEE
Q 046018 204 SNSNGEFWV 212 (310)
Q Consensus 204 ~d~~G~l~v 212 (310)
++++|+..+
T Consensus 338 ~Spdg~~i~ 346 (430)
T PRK00178 338 LSADGKTLV 346 (430)
T ss_pred ECCCCCEEE
Confidence 888886433
No 72
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.21 E-value=6.4e-05 Score=63.74 Aligned_cols=151 Identities=18% Similarity=0.234 Sum_probs=98.3
Q ss_pred eeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEee-----cCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018 48 RPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTE-----AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF 121 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~-----~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~ 121 (310)
..|.|++ . ++++|+++.. ..+..+++.-. +.+..+. .....-...|++|... |+-.|||.-++.-....|
T Consensus 104 diHdia~-~-~~~l~fVNT~fSCLatl~~~~S-F~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~yVTa~~~sD~~~gW 179 (335)
T TIGR03032 104 DAHDLAL-G-AGRLLFVNTLFSCLATVSPDYS-FVPLWKPPFISKLAPEDRCHLNGMALDD-GEPRYVTALSQSDVADGW 179 (335)
T ss_pred chhheee-c-CCcEEEEECcceeEEEECCCCc-cccccCCccccccCccCceeecceeeeC-CeEEEEEEeeccCCcccc
Confidence 3567888 4 6788888776 56999988744 3333222 1223345689999864 444888763321001111
Q ss_pred hhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018 122 MSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDN 201 (310)
Q Consensus 122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~ 201 (310)
+- ...+|.+ .+|..++ +++.+++..|++..+. |++ ||+++++.+.|..+|++. +..+.++..|+.|.|
T Consensus 180 R~----~~~~gG~-vidv~s~--evl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va~vpG~~rG 247 (335)
T TIGR03032 180 RE----GRRDGGC-VIDIPSG--EVVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVAFLPGFTRG 247 (335)
T ss_pred cc----cccCCeE-EEEeCCC--CEEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEEECCCCCcc
Confidence 11 1123333 3676655 3457889999988887 566 999999999999999863 346777788999999
Q ss_pred eEECCCCCEE-EEEec
Q 046018 202 VRSNSNGEFW-VALHA 216 (310)
Q Consensus 202 i~~d~~G~l~-va~~~ 216 (310)
+.+. |++. |+...
T Consensus 248 L~f~--G~llvVgmSk 261 (335)
T TIGR03032 248 LAFA--GDFAFVGLSK 261 (335)
T ss_pred ccee--CCEEEEEecc
Confidence 9998 7655 55444
No 73
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.19 E-value=0.0014 Score=54.85 Aligned_cols=160 Identities=17% Similarity=0.209 Sum_probs=95.1
Q ss_pred eceEEEeCCCCcEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 49 PLGIRFDKKTGDLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
-.||.+.. +|.||.++..- .|.++|++++++......+ +..+..+|++..+ .||.-+..
T Consensus 47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~---~~~FgEGit~~~d--~l~qLTWk------------ 108 (264)
T PF05096_consen 47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP---PRYFGEGITILGD--KLYQLTWK------------ 108 (264)
T ss_dssp EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T---TT--EEEEEEETT--EEEEEESS------------
T ss_pred CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC---ccccceeEEEECC--EEEEEEec------------
Confidence 34999966 78999998863 3999999999865443332 2236678887754 49998854
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC----Ce
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP----DN 201 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p----~~ 201 (310)
.+..+.||+++-+...-..-....-|++ .|++.||+++ ++.+|+.+|++.-.....-.+. ..+.| +-
T Consensus 109 -----~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~-~~g~pv~~LNE 179 (264)
T PF05096_consen 109 -----EGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQVT-DNGRPVSNLNE 179 (264)
T ss_dssp -----SSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-E-ETTEE---EEE
T ss_pred -----CCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEEE-ECCEECCCcEe
Confidence 7889999998654432222123345666 6777788885 6889999998742111111111 11222 33
Q ss_pred eEECCCCCEEEEEecCCccceeeeeeccccccEEeeccc
Q 046018 202 VRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240 (310)
Q Consensus 202 i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~ 240 (310)
+.+- +|.||.-.+....+ +.+++.+|+....+.+
T Consensus 180 LE~i-~G~IyANVW~td~I----~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 180 LEYI-NGKIYANVWQTDRI----VRIDPETGKVVGWIDL 213 (264)
T ss_dssp EEEE-TTEEEEEETTSSEE----EEEETTT-BEEEEEE-
T ss_pred EEEE-cCEEEEEeCCCCeE----EEEeCCCCeEEEEEEh
Confidence 4442 68888877776653 4445566666555543
No 74
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=0.0031 Score=53.11 Aligned_cols=148 Identities=9% Similarity=0.095 Sum_probs=94.7
Q ss_pred ccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 45 ICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 45 ~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
....+..|.++. +|.+.++... .-+..+|...++....+.. +-..+.-+++....+.+..+...
T Consensus 13 ~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~s----kkyG~~~~~Fth~~~~~i~sStk---------- 77 (311)
T KOG1446|consen 13 TNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINS----KKYGVDLACFTHHSNTVIHSSTK---------- 77 (311)
T ss_pred CCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeec----ccccccEEEEecCCceEEEccCC----------
Confidence 346788999998 8887777555 4688888887765444332 11134445554443323333321
Q ss_pred hhhcCCCCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018 124 SILSGDKTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV 202 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i 202 (310)
.+..|..++..+.++.+...+.. ..+.|.++|-+. .+++.+..++|..||++.. +.+....+. .+--.
T Consensus 78 ------~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~---~cqg~l~~~-~~pi~ 146 (311)
T KOG1446|consen 78 ------EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVK---KCQGLLNLS-GRPIA 146 (311)
T ss_pred ------CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCC---CCceEEecC-CCcce
Confidence 24557777777777776655543 468999999876 7888888899999998732 222222222 24567
Q ss_pred EECCCCCEEEEEecCC
Q 046018 203 RSNSNGEFWVALHAKK 218 (310)
Q Consensus 203 ~~d~~G~l~va~~~~~ 218 (310)
++||+|.++++...+.
T Consensus 147 AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 147 AFDPEGLIFALANGSE 162 (311)
T ss_pred eECCCCcEEEEecCCC
Confidence 8999998877766654
No 75
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.16 E-value=0.0013 Score=59.45 Aligned_cols=213 Identities=13% Similarity=0.112 Sum_probs=107.6
Q ss_pred CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccc--cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPL--RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL 135 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~--~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~ 135 (310)
++.||+....+.|+.+|+++++.. .......+.. .....-++. ++. +|++. ..+.++
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~sP~v~-~~~-v~~~~------------------~~g~v~ 218 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVK-WTVNLDVPSLTLRGESAPATA-FGG-AIVGG------------------DNGRVS 218 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEe-eeecCCCCcccccCCCCCEEE-CCE-EEEEc------------------CCCEEE
Confidence 568888866666999999988752 2111111100 001112222 344 77765 267788
Q ss_pred EEeCCCCeEEEEecCCcccc---------eEEEec--CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018 136 KYEKTTKEVTILLQGLAFAN---------GVALSR--DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS 204 (310)
Q Consensus 136 ~~d~~~~~~~~~~~~~~~~~---------gi~~~~--d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 204 (310)
.+|+++|+...... ...|. .+..+| .+..+|++. .++.++.+|+..++ ..+....+.+..+.+
T Consensus 219 a~d~~~G~~~W~~~-~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-~~g~l~ald~~tG~----~~W~~~~~~~~~~~~ 292 (394)
T PRK11138 219 AVLMEQGQLIWQQR-ISQPTGATEIDRLVDVDTTPVVVGGVVYALA-YNGNLVALDLRSGQ----IVWKREYGSVNDFAV 292 (394)
T ss_pred EEEccCChhhheec-cccCCCccchhcccccCCCcEEECCEEEEEE-cCCeEEEEECCCCC----EEEeecCCCccCcEE
Confidence 89988886543211 11110 011112 234588874 56899999987442 223221112233444
Q ss_pred CCCCCEEEEEecCCccceeeeeeccccccEEeeccchh-h---hh---cccccCCCCceEEEEECC-CCCEEEEEEcCCC
Q 046018 205 NSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSF-R---QL---HSLLVGGKPHATAIKLSE-KGEVLEVLEDCEG 276 (310)
Q Consensus 205 d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~-~---~~---~~~~~~~~~~~~~~~~d~-~g~~~~~~~~~~g 276 (310)
.+|+||+++..+. + ...+..+|+.+...+... . .| ....+.....+.+.++|+ +|+++..+....+
T Consensus 293 -~~~~vy~~~~~g~-l----~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~ 366 (394)
T PRK11138 293 -DGGRIYLVDQNDR-V----YALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS 366 (394)
T ss_pred -ECCEEEEEcCCCe-E----EEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 3577888776544 1 333445666654432211 0 00 011111222334556764 4766655543221
Q ss_pred CeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018 277 KTLSFISEVEEKDGQLWMGSVLMPFIGIYNR 307 (310)
Q Consensus 277 ~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~ 307 (310)
. ..+..+..+++||+++. +..|+.|++
T Consensus 367 ~---~~s~P~~~~~~l~v~t~-~G~l~~~~~ 393 (394)
T PRK11138 367 G---FLSEPVVADDKLLIQAR-DGTVYAITR 393 (394)
T ss_pred c---ceeCCEEECCEEEEEeC-CceEEEEeC
Confidence 1 13334456889999986 667887764
No 76
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.16 E-value=0.00099 Score=61.49 Aligned_cols=149 Identities=12% Similarity=0.180 Sum_probs=97.5
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeC-CCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGP-EGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~-~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
.....+++.+ +++..++...+. |..+|. +.+...+.... -...+++++++|+|+ +.++.+.
T Consensus 204 ~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g----H~~~v~~~~f~p~g~-~i~Sgs~----------- 266 (456)
T KOG0266|consen 204 RGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG----HSTYVTSVAFSPDGN-LLVSGSD----------- 266 (456)
T ss_pred cceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecC----CCCceEEEEecCCCC-EEEEecC-----------
Confidence 4566899999 887666655544 666777 44343333221 123578999999998 7777654
Q ss_pred hhcCCCCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC--CCCCe
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP--GFPDN 201 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~p~~ 201 (310)
++.|..||..+++......... ...++++.+|++.|+. .+.++.|.+||..++.......+.... .....
T Consensus 267 ------D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s-~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 339 (456)
T KOG0266|consen 267 ------DGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVS-ASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTS 339 (456)
T ss_pred ------CCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEE-cCCCccEEEEECCCCceeeeecccCCCCCCceeE
Confidence 7889999999877766554443 4678999999995554 477899999998754311011111111 11267
Q ss_pred eEECCCCCEEEEEecCCc
Q 046018 202 VRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 202 i~~d~~G~l~va~~~~~~ 219 (310)
+.++++|...+....++.
T Consensus 340 ~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 340 VQFSPNGKYLLSASLDRT 357 (456)
T ss_pred EEECCCCcEEEEecCCCe
Confidence 899999976666555543
No 77
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.16 E-value=0.00079 Score=59.79 Aligned_cols=169 Identities=16% Similarity=0.167 Sum_probs=103.4
Q ss_pred CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCc-eEEE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTG-RLLK 136 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g-~v~~ 136 (310)
+|.+++....+..+.+++..+...++... ....-..+..++++ +.+++. +| .+-.
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~----~~VrY~r~~~~~e~--~vigt~------------------dgD~l~i 386 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYSIQVGKK----GGVRYRRIQVDPEG--DVIGTN------------------DGDKLGI 386 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCeeEEcCCC----CceEEEEEccCCcc--eEEecc------------------CCceEEE
Confidence 56666665655678888877765444221 11223345566663 555552 44 6889
Q ss_pred EeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEe
Q 046018 137 YEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALH 215 (310)
Q Consensus 137 ~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~ 215 (310)
||.++++++....+++....+.+++||+.+.++ ...-.||++|++.++. +.... -.+....+.+.++++ |+|-.
T Consensus 387 yd~~~~e~kr~e~~lg~I~av~vs~dGK~~vva-Ndr~el~vididngnv---~~idkS~~~lItdf~~~~nsr-~iAYa 461 (668)
T COG4946 387 YDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVA-NDRFELWVIDIDNGNV---RLIDKSEYGLITDFDWHPNSR-WIAYA 461 (668)
T ss_pred EecCCceEEEeeCCccceEEEEEcCCCcEEEEE-cCceEEEEEEecCCCe---eEecccccceeEEEEEcCCce-eEEEe
Confidence 999999999888889899999999999977777 4567999999986532 33222 223455677777774 44433
Q ss_pred cCCccceeeeeeccccccEEeeccchhhhhcccccCCCCc
Q 046018 216 AKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPH 255 (310)
Q Consensus 216 ~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 255 (310)
-...-+..-|..++..+..+-.+..|...-.+.+|.....
T Consensus 462 fP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~r 501 (668)
T COG4946 462 FPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGR 501 (668)
T ss_pred cCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCc
Confidence 2222233336666666655555555544444444444333
No 78
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.0018 Score=59.35 Aligned_cols=140 Identities=14% Similarity=0.127 Sum_probs=84.1
Q ss_pred eeceEEEeCCCCc-EEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 48 RPLGIRFDKKTGD-LYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 48 ~p~gl~~d~~~g~-l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
.....++++ +|+ |..+.... .|+.+|.++++.+.+... .+ ....++++|||++|+++...
T Consensus 205 ~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-~g----~~~~~~wSPDG~~La~~~~~---------- 268 (429)
T PRK01742 205 PLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-RG----HNGAPAFSPDGSRLAFASSK---------- 268 (429)
T ss_pred ccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-CC----ccCceeECCCCCEEEEEEec----------
Confidence 355788999 554 54443322 388899988765544322 11 23368999999977776422
Q ss_pred hhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC--ceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018 124 SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN--CRILRFWLHGPNSGKQDVFAELPGFPDN 201 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~ 201 (310)
...-.|+.+|.+++..+.+..........+|+|||+.|+++.... -.||.++..+.. ...+ ...+ ..
T Consensus 269 -----~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---~~~l-~~~~--~~ 337 (429)
T PRK01742 269 -----DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---ASLV-GGRG--YS 337 (429)
T ss_pred -----CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEe-cCCC--CC
Confidence 112358899988777766554333456789999999877764433 366666654431 2222 1111 34
Q ss_pred eEECCCCCEEEEE
Q 046018 202 VRSNSNGEFWVAL 214 (310)
Q Consensus 202 i~~d~~G~l~va~ 214 (310)
..++++|+..+..
T Consensus 338 ~~~SpDG~~ia~~ 350 (429)
T PRK01742 338 AQISADGKTLVMI 350 (429)
T ss_pred ccCCCCCCEEEEE
Confidence 6688898754433
No 79
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.13 E-value=0.00049 Score=59.48 Aligned_cols=184 Identities=14% Similarity=0.137 Sum_probs=100.6
Q ss_pred CEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC---------Cce
Q 046018 105 GVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS---------NCR 175 (310)
Q Consensus 105 ~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~---------~~~ 175 (310)
+|+||.|.... +..++++.+|.+++++.-..+..-.++ ++++||++.+|++++. ++-
T Consensus 3 ~rvyV~D~~~~-------------~~~~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDv 68 (342)
T PF06433_consen 3 HRVYVQDPVFF-------------HMTSRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDV 68 (342)
T ss_dssp TEEEEEE-GGG-------------GSSEEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEECCccc-------------cccceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeE
Confidence 35999886421 125799999999988765444443445 7789999999998874 457
Q ss_pred EEEEEccCCCC-Ccceeee----eCCCCCCeeEECCCCC-EEEEEecCCccceeeeeeccccccEEeeccchh-hh--hc
Q 046018 176 ILRFWLHGPNS-GKQDVFA----ELPGFPDNVRSNSNGE-FWVALHAKKGLFGKLILLNSWLGKTLLKLPLSF-RQ--LH 246 (310)
Q Consensus 176 i~~~~~~~~~~-~~~~~~~----~~~~~p~~i~~d~~G~-l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~-~~--~~ 246 (310)
|..||..+-.. .+..+.. .....+..+.+..||+ +||.+...-..+ -..+...++++..++.|. .. |.
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SV---tVVDl~~~kvv~ei~~PGC~~iyP~ 145 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSV---TVVDLAAKKVVGEIDTPGCWLIYPS 145 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEE---EEEETTTTEEEEEEEGTSEEEEEEE
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeE---EEEECCCCceeeeecCCCEEEEEec
Confidence 88888764211 1111110 0012456788888885 777766554321 244556778888887762 11 10
Q ss_pred ---cc-ccCCCCceEEEEECCCCCEEEEEE---cCCCCeecceeEEEE-eCCEEEEecCCCCeEEEecc
Q 046018 247 ---SL-LVGGKPHATAIKLSEKGEVLEVLE---DCEGKTLSFISEVEE-KDGQLWMGSVLMPFIGIYNR 307 (310)
Q Consensus 247 ---~~-~~~~~~~~~~~~~d~~g~~~~~~~---~~~g~~~~~~~~~~~-~~g~l~vgs~~~~~i~~~~~ 307 (310)
++ ..-+.+.-+-+.+|.+|+....-. .++-.+ -....+.. .++++|+-++ ...|+..+.
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp-~f~~~~~~~~~~~~~F~Sy-~G~v~~~dl 212 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDP-LFEHPAYSRDGGRLYFVSY-EGNVYSADL 212 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS--B-S--EEETTTTEEEEEBT-TSEEEEEEE
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcc-cccccceECCCCeEEEEec-CCEEEEEec
Confidence 00 011334445567788887663322 111111 01122222 3578888888 666776553
No 80
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.12 E-value=0.0026 Score=57.13 Aligned_cols=156 Identities=15% Similarity=0.130 Sum_probs=77.5
Q ss_pred CceEEEEeCCCCeEEEEecCCccc-------------ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC
Q 046018 131 TGRLLKYEKTTKEVTILLQGLAFA-------------NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG 197 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~~~-------------~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 197 (310)
.+.++.+|+++|+...... ...+ ....+ +++.+|++. ..+.++.+|+..++ ..+.....
T Consensus 199 ~g~v~ald~~tG~~~W~~~-~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-~~g~l~a~d~~tG~----~~W~~~~~ 270 (377)
T TIGR03300 199 GGKLVALDLQTGQPLWEQR-VALPKGRTELERLVDVDGDPVV--DGGQVYAVS-YQGRVAALDLRSGR----VLWKRDAS 270 (377)
T ss_pred CCEEEEEEccCCCEeeeec-cccCCCCCchhhhhccCCccEE--ECCEEEEEE-cCCEEEEEECCCCc----EEEeeccC
Confidence 5789999998886542111 1111 11122 234588874 56899999986432 12221111
Q ss_pred CCCeeEECCCCCEEEEEecCCccceeeeee-ccccccEEeec-cchhhhhcc------cccCCCCceEEEEECCC-CCEE
Q 046018 198 FPDNVRSNSNGEFWVALHAKKGLFGKLILL-NSWLGKTLLKL-PLSFRQLHS------LLVGGKPHATAIKLSEK-GEVL 268 (310)
Q Consensus 198 ~p~~i~~d~~G~l~va~~~~~~~~~~~i~~-~~~~g~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~d~~-g~~~ 268 (310)
......++ ++++|++...+. +.. +..+|+.+... ......... ..+.....+.+..+|++ |+++
T Consensus 271 ~~~~p~~~-~~~vyv~~~~G~------l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 271 SYQGPAVD-DNRLYVTDADGV------VVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred CccCceEe-CCEEEEECCCCe------EEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEE
Confidence 12233343 467887764433 333 34466665443 221111111 11111223345566653 7776
Q ss_pred EEEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEe
Q 046018 269 EVLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIY 305 (310)
Q Consensus 269 ~~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~ 305 (310)
..+..+.+. ..+..+..+++||+++. +..|+.|
T Consensus 344 ~~~~~~~~~---~~~sp~~~~~~l~v~~~-dG~l~~~ 376 (377)
T TIGR03300 344 ARLKTDGSG---IASPPVVVGDGLLVQTR-DGDLYAF 376 (377)
T ss_pred EEEEcCCCc---cccCCEEECCEEEEEeC-CceEEEe
Confidence 666533221 12333456789999997 5557665
No 81
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.11 E-value=0.0003 Score=63.90 Aligned_cols=109 Identities=21% Similarity=0.312 Sum_probs=73.0
Q ss_pred ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--------cCCcccceEEEecCC
Q 046018 92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--------QGLAFANGVALSRDR 163 (310)
Q Consensus 92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--------~~~~~~~gi~~~~d~ 163 (310)
+..|.+|++.|+|+ +||+... .|+|++++..++..+.+. ......-||+++||-
T Consensus 29 L~~Pw~maflPDG~-llVtER~-----------------~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDNQ-LWVTERA-----------------TGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCCe-EEEEEec-----------------CCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 45899999999998 9999721 589999987655433221 123446799999874
Q ss_pred ------CeEEEEecC---------CceEEEEEccC--CCCCc-ceeeeeCCCC----CCeeEECCCCCEEEEEecCC
Q 046018 164 ------TFILIAETS---------NCRILRFWLHG--PNSGK-QDVFAELPGF----PDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 164 ------~~lyv~~~~---------~~~i~~~~~~~--~~~~~-~~~~~~~~~~----p~~i~~d~~G~l~va~~~~~ 218 (310)
++||++.+. ..+|.++..+. ..... ..++...|.. -..|++++||.|||+.-+..
T Consensus 91 ~~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g 167 (454)
T TIGR03606 91 MQEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQG 167 (454)
T ss_pred cccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCC
Confidence 468887522 46898887752 12222 2334444421 24589999999999987764
No 82
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.08 E-value=4.2e-05 Score=53.00 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=50.5
Q ss_pred eEEEeCCCCcEEEEEC---------------C---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeC
Q 046018 51 GIRFDKKTGDLYIADA---------------Y---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDS 112 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~---------------~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~ 112 (310)
++++++++|.||+++. . +++.++||.+++.+.+.+. +.+||+|++++|+.+++|+..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-----L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-----LYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-----ESSEEEEEE-TTSSEEEEEEG
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-----CCccCeEEEcCCCCEEEEEec
Confidence 5788884499999995 1 2399999999998777653 568999999999998888874
Q ss_pred CCchhhhhhhhhhhcCCCCceEEEEeCC
Q 046018 113 STSFQRRQFMSSILSGDKTGRLLKYEKT 140 (310)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~ 140 (310)
. ..+|.+|-.+
T Consensus 77 ~-----------------~~Ri~rywl~ 87 (89)
T PF03088_consen 77 G-----------------RYRILRYWLK 87 (89)
T ss_dssp G-----------------GTEEEEEESS
T ss_pred c-----------------CceEEEEEEe
Confidence 3 6678888765
No 83
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.08 E-value=6.3e-05 Score=66.40 Aligned_cols=176 Identities=13% Similarity=0.154 Sum_probs=109.5
Q ss_pred cccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEE
Q 046018 3 YTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLAT 81 (310)
Q Consensus 3 ~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~ 81 (310)
++...|+.+..||.+.+. -+.+ ......|.=+.+.+++.+++++... ..|..+|.+++++.
T Consensus 274 LS~sfD~~lKlwDtETG~-------~~~~-----------f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETGQ-------VLSR-----------FHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred eeeecceeeeeeccccce-------EEEE-----------EecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH
Confidence 455566677777776641 0111 1112234456677744477777666 45999999988753
Q ss_pred EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cCCcccceEEE
Q 046018 82 QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QGLAFANGVAL 159 (310)
Q Consensus 82 ~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~~~gi~~ 159 (310)
+-. +..+...++|.+-++|+ -+|+++. ++.+..|+-......... .....--.+++
T Consensus 336 qeY----d~hLg~i~~i~F~~~g~-rFissSD-----------------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~ 393 (503)
T KOG0282|consen 336 QEY----DRHLGAILDITFVDEGR-RFISSSD-----------------DKSVRIWENRIPVPIKNIADPEMHTMPCLTL 393 (503)
T ss_pred HHH----HhhhhheeeeEEccCCc-eEeeecc-----------------CccEEEEEcCCCccchhhcchhhccCcceec
Confidence 222 22344688999999999 6666543 556777775543222211 11112236888
Q ss_pred ecCCCeEEEEecCCceEEEEEccCC-CCCcceeeee--CCCCCCeeEECCCCCEEEEEecCCc
Q 046018 160 SRDRTFILIAETSNCRILRFWLHGP-NSGKQDVFAE--LPGFPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 160 ~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~p~~i~~d~~G~l~va~~~~~~ 219 (310)
.|.++ .+++.+..++|++|..... +......+.. .+|++-.+.+++||...++....+.
T Consensus 394 ~P~~~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~ 455 (503)
T KOG0282|consen 394 HPNGK-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGK 455 (503)
T ss_pred CCCCC-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCcc
Confidence 99988 6778889999999986543 2222334433 4678889999999988777666554
No 84
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.05 E-value=0.0015 Score=58.69 Aligned_cols=176 Identities=15% Similarity=0.155 Sum_probs=110.2
Q ss_pred CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCcc-ccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeE
Q 046018 2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDI-EHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLA 80 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~ 80 (310)
+|++..+|.|..|+..... ++... ........+|+.+. .+.|+......-+.+++..++..
T Consensus 335 i~SgsyDG~I~~W~~~~g~-----------------~~~~~g~~h~nqI~~~~~~~-~~~~~t~g~Dd~l~~~~~~~~~~ 396 (603)
T KOG0318|consen 335 IYSGSYDGHINSWDSGSGT-----------------SDRLAGKGHTNQIKGMAASE-SGELFTIGWDDTLRVISLKDNGY 396 (603)
T ss_pred EEeeccCceEEEEecCCcc-----------------ccccccccccceEEEEeecC-CCcEEEEecCCeEEEEecccCcc
Confidence 5777777777777775540 00000 11224566888876 78999888887788877655433
Q ss_pred EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEe
Q 046018 81 TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALS 160 (310)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~ 160 (310)
+.-.. -.....|-++++.++|..+.++. ...|..+.-.++ .... +-.-.+.++|++
T Consensus 397 t~~~~---~~lg~QP~~lav~~d~~~avv~~-------------------~~~iv~l~~~~~-~~~~-~~~y~~s~vAv~ 452 (603)
T KOG0318|consen 397 TKSEV---VKLGSQPKGLAVLSDGGTAVVAC-------------------ISDIVLLQDQTK-VSSI-PIGYESSAVAVS 452 (603)
T ss_pred cccce---eecCCCceeEEEcCCCCEEEEEe-------------------cCcEEEEecCCc-ceee-ccccccceEEEc
Confidence 21100 01234788999999987455554 333544442222 2222 223357899999
Q ss_pred cCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCcc
Q 046018 161 RDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGL 220 (310)
Q Consensus 161 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~ 220 (310)
||+..+.|. -..++|++|.+.+..+.+.....+..+.+..+++++||.+++++-..+.+
T Consensus 453 ~~~~~vaVG-G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkv 511 (603)
T KOG0318|consen 453 PDGSEVAVG-GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKV 511 (603)
T ss_pred CCCCEEEEe-cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcE
Confidence 999966665 45578999999875443222333344667899999999988888777764
No 85
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=0.0019 Score=55.58 Aligned_cols=147 Identities=14% Similarity=0.267 Sum_probs=94.0
Q ss_pred eceEEEeCCCCcEEEEECCC--ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 49 PLGIRFDKKTGDLYIADAYL--GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
...|...+ +|..|+..... .|..+|++++..+++... + .....-+..+|||..++.++-
T Consensus 198 Vtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--g--lgg~slLkwSPdgd~lfaAt~-------------- 258 (445)
T KOG2139|consen 198 VTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPK--G--LGGFSLLKWSPDGDVLFAATC-------------- 258 (445)
T ss_pred eeEEEEcC-CCCEEeecccCcceEEEEcCCCCCccccccc--C--CCceeeEEEcCCCCEEEEecc--------------
Confidence 34788888 78777776653 488899999887666422 1 123456889999996665552
Q ss_pred cCCCCceEEEEeCCCCe--EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCC------C--cceeeeeC-
Q 046018 127 SGDKTGRLLKYEKTTKE--VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNS------G--KQDVFAEL- 195 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~--~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~------~--~~~~~~~~- 195 (310)
++....|+ ++.. .++..-..+...+-+++|+|++|+++-.++..||....+++.. + .....+++
T Consensus 259 ----davfrlw~-e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 259 ----DAVFRLWQ-ENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred ----cceeeeeh-hcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 33233331 2222 2222223335678889999999999889999999987764311 0 11112222
Q ss_pred -----------CCCCCeeEECCCCCEEEEEecCCc
Q 046018 196 -----------PGFPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 196 -----------~~~p~~i~~d~~G~l~va~~~~~~ 219 (310)
.+.+..++.|+.|+..+..+.+..
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 246788999999987777776654
No 86
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.04 E-value=0.0019 Score=54.05 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=95.7
Q ss_pred cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE--ecCCcccceEEEecCCCeEEEEe
Q 046018 93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL--LQGLAFANGVALSRDRTFILIAE 170 (310)
Q Consensus 93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~~~gi~~~~d~~~lyv~~ 170 (310)
.+..++.+..+|. ||-++-. .....|.++|+++++.... .+..-+..||++..| .||.-.
T Consensus 45 aFTQGL~~~~~g~-LyESTG~---------------yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLT 106 (264)
T PF05096_consen 45 AFTQGLEFLDDGT-LYESTGL---------------YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLT 106 (264)
T ss_dssp -EEEEEEEEETTE-EEEEECS---------------TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEE
T ss_pred ccCccEEecCCCE-EEEeCCC---------------CCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEE
Confidence 3567888888887 9998832 2355799999999876542 233446789999854 489887
Q ss_pred cCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhccccc
Q 046018 171 TSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLV 250 (310)
Q Consensus 171 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~ 250 (310)
..++..++||.+. ......+ ..++...|++.|. ..||+++.+.. +..
T Consensus 107 Wk~~~~f~yd~~t--l~~~~~~-~y~~EGWGLt~dg-~~Li~SDGS~~------L~~----------------------- 153 (264)
T PF05096_consen 107 WKEGTGFVYDPNT--LKKIGTF-PYPGEGWGLTSDG-KRLIMSDGSSR------LYF----------------------- 153 (264)
T ss_dssp SSSSEEEEEETTT--TEEEEEE-E-SSS--EEEECS-SCEEEE-SSSE------EEE-----------------------
T ss_pred ecCCeEEEEcccc--ceEEEEE-ecCCcceEEEcCC-CEEEEECCccc------eEE-----------------------
Confidence 8899999999763 1111222 2446678999764 46888876543 222
Q ss_pred CCCCceEEEEECCC-CCEEEEEE-cCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018 251 GGKPHATAIKLSEK-GEVLEVLE-DCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR 307 (310)
Q Consensus 251 ~~~~~~~~~~~d~~-g~~~~~~~-~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~ 307 (310)
+||. -+...... ..+|.+...+..+...+|.+|.--+.++.|+++|.
T Consensus 154 ----------~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 154 ----------LDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp ----------E-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEET
T ss_pred ----------ECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeC
Confidence 2322 11121111 12455666677777789999999999999999986
No 87
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=0.00066 Score=56.98 Aligned_cols=156 Identities=10% Similarity=0.130 Sum_probs=93.7
Q ss_pred cceeceEEEeCCCCcEEEEECCCc---eEEEeCCCCeEEEEE-e--ec-CCccccCCcceEEeCCCCEEEEEeCCCchhh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAYLG---FQVVGPEGGLATQLV-T--EA-AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~~g---i~~~d~~~~~~~~~~-~--~~-~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~ 118 (310)
...|.+|+.-. +|..-+++...+ ++.+|+++..+.... . .. .........++|.|+..+++|++-...
T Consensus 128 ~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~---- 202 (316)
T COG3204 128 FSDPETIEYIG-GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN---- 202 (316)
T ss_pred cCChhHeEEec-CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC----
Confidence 36788898876 665555555543 445577755432111 1 11 111234567999999988899986431
Q ss_pred hhhhhhhhcCCCCceEEEEeCCCCeEEEEec-C--------CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcc
Q 046018 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQ-G--------LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQ 189 (310)
Q Consensus 119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~--------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~ 189 (310)
--+|+.++........-.. . .....|+.+++..+.|+|-+..++.|..++.+|...+..
T Consensus 203 ------------P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~l 270 (316)
T COG3204 203 ------------PIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELL 270 (316)
T ss_pred ------------CcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeE
Confidence 2347777643222221110 0 123468888887777888777888999998876532222
Q ss_pred eeeeeCC------CCCCeeEECCCCCEEEEEecCC
Q 046018 190 DVFAELP------GFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 190 ~~~~~~~------~~p~~i~~d~~G~l~va~~~~~ 218 (310)
....... ..+.|++.|.+|+||++.-.+.
T Consensus 271 sL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnl 305 (316)
T COG3204 271 SLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNL 305 (316)
T ss_pred EeccCCCCCcccCCCcceeEECCCCCEEEEecCCc
Confidence 1111110 2478999999999999987665
No 88
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.02 E-value=0.0062 Score=55.73 Aligned_cols=140 Identities=12% Similarity=0.096 Sum_probs=76.9
Q ss_pred eEEEeCCCCc----EEEEECCC--ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 51 GIRFDKKTGD----LYIADAYL--GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 51 gl~~d~~~g~----l~v~~~~~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
.-+++| +|+ +|+....+ .|+..+.++++.+++... .+ .....+++|||++|.++....
T Consensus 189 sP~wSP-DG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-~g----~~~~p~wSPDG~~Laf~s~~~---------- 252 (428)
T PRK01029 189 TPTWMH-IGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-QG----NQLMPTFSPRKKLLAFISDRY---------- 252 (428)
T ss_pred cceEcc-CCCceEEEEEEccCCCceEEEEECCCCCceEeecC-CC----CccceEECCCCCEEEEEECCC----------
Confidence 457888 653 23444332 499999998877666432 12 123468999998777765321
Q ss_pred hhcCCCCceEEEEeCCC---CeEEEEecCC-cccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeCCCC
Q 046018 125 ILSGDKTGRLLKYEKTT---KEVTILLQGL-AFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAELPGF 198 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~---~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (310)
+..+-.+..++.++ ++.+.+.... ......+++|||+.|+++... ...||+++.++.. +....+....+.
T Consensus 253 ---g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~~~ 328 (428)
T PRK01029 253 ---GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKYRN 328 (428)
T ss_pred ---CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCCCC
Confidence 00122233356543 3334443322 223457899999977665432 3468888765321 122223222223
Q ss_pred CCeeEECCCCCE
Q 046018 199 PDNVRSNSNGEF 210 (310)
Q Consensus 199 p~~i~~d~~G~l 210 (310)
.....+++||+.
T Consensus 329 ~~~p~wSPDG~~ 340 (428)
T PRK01029 329 SSCPAWSPDGKK 340 (428)
T ss_pred ccceeECCCCCE
Confidence 356788999963
No 89
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.01 E-value=0.0052 Score=56.25 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=85.5
Q ss_pred cccccccCCCCCccccccceeceEEEeCCCC-cEEEEECCC---ceEE--EeCCC---CeEEEEEeecCCccccCCcceE
Q 046018 29 SQRKECVRPFAPDIEHICGRPLGIRFDKKTG-DLYIADAYL---GFQV--VGPEG---GLATQLVTEAAGQPLRFTNDLD 99 (310)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g-~l~v~~~~~---gi~~--~d~~~---~~~~~~~~~~~~~~~~~~~~i~ 99 (310)
++.++..+.....+....+.....+++| +| .|.++.... .++. ++..+ +..+++... ........+
T Consensus 213 I~~~~l~~g~~~~lt~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~----~~~~~~~p~ 287 (428)
T PRK01029 213 IFLGSLENPAGKKILALQGNQLMPTFSP-RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE----AFGTQGNPS 287 (428)
T ss_pred EEEEECCCCCceEeecCCCCccceEECC-CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC----CCCCcCCeE
Confidence 4444544433333333334445678888 55 555544322 2444 34443 233333221 111234578
Q ss_pred EeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCC--CCeEEEEecCCcccceEEEecCCCeEEEEecC--Cce
Q 046018 100 IDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKT--TKEVTILLQGLAFANGVALSRDRTFILIAETS--NCR 175 (310)
Q Consensus 100 ~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~--~~~ 175 (310)
++|||++|+++.... ....|+.++.+ ++..+.+..........+++|||+.|+++... ...
T Consensus 288 wSPDG~~Laf~s~~~---------------g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~ 352 (428)
T PRK01029 288 FSPDGTRLVFVSNKD---------------GRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQ 352 (428)
T ss_pred ECCCCCEEEEEECCC---------------CCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcE
Confidence 999999777765321 13358887764 23344443333334567899999988766443 347
Q ss_pred EEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCE
Q 046018 176 ILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEF 210 (310)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 210 (310)
|+++|++++. ...+...+.......+++||+.
T Consensus 353 I~v~dl~~g~---~~~Lt~~~~~~~~p~wSpDG~~ 384 (428)
T PRK01029 353 ICVYDLATGR---DYQLTTSPENKESPSWAIDSLH 384 (428)
T ss_pred EEEEECCCCC---eEEccCCCCCccceEECCCCCE
Confidence 9999987542 2333322233456788888863
No 90
>PTZ00421 coronin; Provisional
Probab=98.00 E-value=0.003 Score=58.67 Aligned_cols=146 Identities=9% Similarity=0.013 Sum_probs=83.4
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
.....+++++..+.++++....+ |..+|.++++....... ....+.+++++++|+ +.++...
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~----h~~~V~sla~spdG~-lLatgs~------------ 188 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC----HSDQITSLEWNLDGS-LLCTTSK------------ 188 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC----CCCceEEEEEECCCC-EEEEecC------------
Confidence 44567899883345555544444 78889887764322221 112478899999999 6666533
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCc--ccceEEEecCCCeEEEEe---cCCceEEEEEccCCCCCcceeee-eCCCCC
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLA--FANGVALSRDRTFILIAE---TSNCRILRFWLHGPNSGKQDVFA-ELPGFP 199 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~--~~~gi~~~~d~~~lyv~~---~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p 199 (310)
++.|..||+.+++......... ....+.+.+++..++.+. +.++.|..||+..... ...... ......
T Consensus 189 -----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-p~~~~~~d~~~~~ 262 (493)
T PTZ00421 189 -----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-PYSTVDLDQSSAL 262 (493)
T ss_pred -----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-ceeEeccCCCCce
Confidence 7889999998776433222221 234567788877554432 2357899999863211 111111 111111
Q ss_pred CeeEECCCCCEEEEEe
Q 046018 200 DNVRSNSNGEFWVALH 215 (310)
Q Consensus 200 ~~i~~d~~G~l~va~~ 215 (310)
....+|+++++++...
T Consensus 263 ~~~~~d~d~~~L~lgg 278 (493)
T PTZ00421 263 FIPFFDEDTNLLYIGS 278 (493)
T ss_pred EEEEEcCCCCEEEEEE
Confidence 2246788887655443
No 91
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=97.99 E-value=0.00027 Score=61.50 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=72.3
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-----CcccceEEEecCCCeEEE
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-----LAFANGVALSRDRTFILI 168 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----~~~~~gi~~~~d~~~lyv 168 (310)
+|-+|+++.+|.-+||+|. --.|+.++++++..+.+... ....|++.++++|. +|+
T Consensus 116 RPLGl~f~~~ggdL~VaDA------------------YlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyF 176 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADA------------------YLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGV-VYF 176 (376)
T ss_pred CcceEEeccCCCeEEEEec------------------ceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCe-EEE
Confidence 7899999999833999994 33599999998877665432 34468999999665 999
Q ss_pred EecC-----------------CceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018 169 AETS-----------------NCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 169 ~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~ 218 (310)
+++. ++++.+||+.++ ..+++.+.-..|+|+++++|+.+.+.+--.-
T Consensus 177 TDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK---~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~ 240 (376)
T KOG1520|consen 177 TDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTK---VTKVLLDGLYFPNGLALSPDGSFVLVAETTT 240 (376)
T ss_pred eccccccchhheEEeeecCCCccceEEecCccc---chhhhhhcccccccccCCCCCCEEEEEeecc
Confidence 8875 467777776532 1223333224799999999998666544443
No 92
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.99 E-value=0.0059 Score=54.87 Aligned_cols=217 Identities=14% Similarity=0.132 Sum_probs=105.7
Q ss_pred EEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018 52 IRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT 131 (310)
Q Consensus 52 l~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (310)
.+++ ++.+|++...+.++.+|+++++.. ......+... ...++ .++. +|+.. ..
T Consensus 101 p~v~--~~~v~v~~~~g~l~ald~~tG~~~-W~~~~~~~~~---~~p~v-~~~~-v~v~~------------------~~ 154 (377)
T TIGR03300 101 VGAD--GGLVFVGTEKGEVIALDAEDGKEL-WRAKLSSEVL---SPPLV-ANGL-VVVRT------------------ND 154 (377)
T ss_pred eEEc--CCEEEEEcCCCEEEEEECCCCcEe-eeeccCceee---cCCEE-ECCE-EEEEC------------------CC
Confidence 4444 578999877767999999888753 2111111111 11122 2444 77765 26
Q ss_pred ceEEEEeCCCCeEEEEecCCcc------cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC-------
Q 046018 132 GRLLKYEKTTKEVTILLQGLAF------ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF------- 198 (310)
Q Consensus 132 g~v~~~d~~~~~~~~~~~~~~~------~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------- 198 (310)
+.|+.+|+++|+.......... ....++. ++ .+|+. ..++.++.+|+..++......+....+.
T Consensus 155 g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~-~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~ 231 (377)
T TIGR03300 155 GRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVG-FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV 231 (377)
T ss_pred CeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEEE-CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence 7899999988876532211111 0112222 33 46665 5567899999864421110001000000
Q ss_pred --CCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhh-h---cccccCCCCceEEEEECC-CCCEEEEE
Q 046018 199 --PDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQ-L---HSLLVGGKPHATAIKLSE-KGEVLEVL 271 (310)
Q Consensus 199 --p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~d~-~g~~~~~~ 271 (310)
.....+ .++.+|++...+. + ...+..+|+.+...+..... + ....+.....+.+.++|. +|+.+...
T Consensus 232 ~~~~~p~~-~~~~vy~~~~~g~-l----~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 232 DVDGDPVV-DGGQVYAVSYQGR-V----AALDLRSGRVLWKRDASSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred ccCCccEE-ECCEEEEEEcCCE-E----EEEECCCCcEEEeeccCCccCceEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 011122 2567888776544 1 23334577766554422110 0 111122223345566665 35544333
Q ss_pred EcCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018 272 EDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR 307 (310)
Q Consensus 272 ~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~ 307 (310)
..-.+. ..+.....++.||+++. +..|+.++.
T Consensus 306 ~~~~~~---~~ssp~i~g~~l~~~~~-~G~l~~~d~ 337 (377)
T TIGR03300 306 DELKYR---QLTAPAVVGGYLVVGDF-EGYLHWLSR 337 (377)
T ss_pred ccccCC---ccccCEEECCEEEEEeC-CCEEEEEEC
Confidence 111111 22333346778888875 566777664
No 93
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.99 E-value=0.0028 Score=52.63 Aligned_cols=175 Identities=8% Similarity=0.099 Sum_probs=103.4
Q ss_pred CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeE
Q 046018 2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLA 80 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~ 80 (310)
.|++..|+.++-||..... ..+.+........++++++ +++-.|...... |-.+|..+.-.
T Consensus 78 alS~swD~~lrlWDl~~g~-----------------~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck 139 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGE-----------------STRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCK 139 (315)
T ss_pred EEeccccceEEEEEecCCc-----------------EEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEE
Confidence 3556666777777765531 0022232334566899999 555555555543 66667765432
Q ss_pred EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEE
Q 046018 81 TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVAL 159 (310)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~ 159 (310)
-.+.. .....-.+.+.+.|+....++...+ .++.|-.||..+-+......+ ....+-+++
T Consensus 140 ~t~~~---~~~~~WVscvrfsP~~~~p~Ivs~s----------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~v 200 (315)
T KOG0279|consen 140 YTIHE---DSHREWVSCVRFSPNESNPIIVSAS----------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTV 200 (315)
T ss_pred EEEec---CCCcCcEEEEEEcCCCCCcEEEEcc----------------CCceEEEEccCCcchhhccccccccEEEEEE
Confidence 22221 1113467889999985225555533 377899999976555432222 234688999
Q ss_pred ecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018 160 SRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 160 ~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~ 218 (310)
+|||. |..+.-..+.++.||++.++- ...+. .......++|.| .++|++..-..
T Consensus 201 SpDGs-lcasGgkdg~~~LwdL~~~k~--lysl~-a~~~v~sl~fsp-nrywL~~at~~ 254 (315)
T KOG0279|consen 201 SPDGS-LCASGGKDGEAMLWDLNEGKN--LYSLE-AFDIVNSLCFSP-NRYWLCAATAT 254 (315)
T ss_pred CCCCC-EEecCCCCceEEEEEccCCce--eEecc-CCCeEeeEEecC-CceeEeeccCC
Confidence 99998 777777788999999874311 11111 112347789987 45777655444
No 94
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.98 E-value=0.0037 Score=56.58 Aligned_cols=217 Identities=15% Similarity=0.131 Sum_probs=106.0
Q ss_pred eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018 51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK 130 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~ 130 (310)
+++++ +++||++...+.++.+|.++++.. ......+.....| ++. ++. +|+.. .
T Consensus 115 ~~~v~--~~~v~v~~~~g~l~ald~~tG~~~-W~~~~~~~~~ssP---~v~-~~~-v~v~~------------------~ 168 (394)
T PRK11138 115 GVTVA--GGKVYIGSEKGQVYALNAEDGEVA-WQTKVAGEALSRP---VVS-DGL-VLVHT------------------S 168 (394)
T ss_pred ccEEE--CCEEEEEcCCCEEEEEECCCCCCc-ccccCCCceecCC---EEE-CCE-EEEEC------------------C
Confidence 35554 578999877666999999988742 2111111111111 222 455 88865 2
Q ss_pred CceEEEEeCCCCeEEEEecCCccc-------ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC-----
Q 046018 131 TGRLLKYEKTTKEVTILLQGLAFA-------NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF----- 198 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~~~-------~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----- 198 (310)
.+.|+.+|+++|+...-.+.. .| ...++. ++ .+|+. ..++.++.++...++..-...+....+.
T Consensus 169 ~g~l~ald~~tG~~~W~~~~~-~~~~~~~~~~sP~v~-~~-~v~~~-~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 169 NGMLQALNESDGAVKWTVNLD-VPSLTLRGESAPATA-FG-GAIVG-GDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR 244 (394)
T ss_pred CCEEEEEEccCCCEeeeecCC-CCcccccCCCCCEEE-CC-EEEEE-cCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence 678999999988765432211 11 112232 23 47776 5668899988775422111111000000
Q ss_pred ----CCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhh-h---cccccCCCCceEEEEECCC-CCEEE
Q 046018 199 ----PDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQ-L---HSLLVGGKPHATAIKLSEK-GEVLE 269 (310)
Q Consensus 199 ----p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~d~~-g~~~~ 269 (310)
...-.+ .+|.+|++...+. + ...+..+|+.+...+..... + ....+-......+.++|+. |+.+-
T Consensus 245 ~~~~~~sP~v-~~~~vy~~~~~g~-l----~ald~~tG~~~W~~~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W 318 (394)
T PRK11138 245 LVDVDTTPVV-VGGVVYALAYNGN-L----VALDLRSGQIVWKREYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELW 318 (394)
T ss_pred ccccCCCcEE-ECCEEEEEEcCCe-E----EEEECCCCCEEEeecCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEE
Confidence 001112 2577888776543 1 34445677776554332110 0 0001111223345566643 44332
Q ss_pred EEEcCCCCeecceeEEEEeCCEEEEecCCCCeEEEecc
Q 046018 270 VLEDCEGKTLSFISEVEEKDGQLWMGSVLMPFIGIYNR 307 (310)
Q Consensus 270 ~~~~~~g~~~~~~~~~~~~~g~l~vgs~~~~~i~~~~~ 307 (310)
......+. ..+.....+++||+++. +..|+.++.
T Consensus 319 ~~~~~~~~---~~~sp~v~~g~l~v~~~-~G~l~~ld~ 352 (394)
T PRK11138 319 SQSDLLHR---LLTAPVLYNGYLVVGDS-EGYLHWINR 352 (394)
T ss_pred cccccCCC---cccCCEEECCEEEEEeC-CCEEEEEEC
Confidence 22111111 12333446889998876 556766653
No 95
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.97 E-value=0.00039 Score=56.76 Aligned_cols=145 Identities=9% Similarity=0.027 Sum_probs=93.1
Q ss_pred EEeCCCCCeEE-EEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCcc
Q 046018 13 KWQGDELGWTE-FAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQP 91 (310)
Q Consensus 13 ~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~ 91 (310)
.||.+....+. ....++..+|+++..-.........+..+.++. +|++.....+.+|..+|+++-.+..-.+. |
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~-dG~ilTia~gssV~Fwdaksf~~lKs~k~----P 224 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQ-DGRILTIAYGSSVKFWDAKSFGLLKSYKM----P 224 (334)
T ss_pred EEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeecc-CCCEEEEecCceeEEeccccccceeeccC----c
Confidence 35655554433 223344445666633222233335666888988 89988777777898899886443222121 1
Q ss_pred ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCC-cccceEEEecCCCeEEEE
Q 046018 92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGL-AFANGVALSRDRTFILIA 169 (310)
Q Consensus 92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~-~~~~gi~~~~d~~~lyv~ 169 (310)
..+......|+.. +||+... +..+++||-.++.-.... .+. .....+.|+|||. +|.+
T Consensus 225 -~nV~SASL~P~k~-~fVaGge-----------------d~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAs 284 (334)
T KOG0278|consen 225 -CNVESASLHPKKE-FFVAGGE-----------------DFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYAS 284 (334)
T ss_pred -cccccccccCCCc-eEEecCc-----------------ceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeec
Confidence 1345556778888 8888633 678999999887543332 222 2347899999998 9999
Q ss_pred ecCCceEEEEEcc
Q 046018 170 ETSNCRILRFWLH 182 (310)
Q Consensus 170 ~~~~~~i~~~~~~ 182 (310)
.+..+.|..|...
T Consensus 285 GSEDGTirlWQt~ 297 (334)
T KOG0278|consen 285 GSEDGTIRLWQTT 297 (334)
T ss_pred cCCCceEEEEEec
Confidence 8988988888765
No 96
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.0014 Score=60.49 Aligned_cols=113 Identities=15% Similarity=0.200 Sum_probs=80.2
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
.....+++++ .|++.+....++ |..+|.++++........ ...+..+++.++|+ ++++.+
T Consensus 247 ~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h----s~~is~~~f~~d~~-~l~s~s------------- 307 (456)
T KOG0266|consen 247 TYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGH----SDGISGLAFSPDGN-LLVSAS------------- 307 (456)
T ss_pred CceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeecc----CCceEEEEECCCCC-EEEEcC-------------
Confidence 4557899999 667777766655 778899987765443321 12577899999999 555543
Q ss_pred hcCCCCceEEEEeCCCCeEE--EEecCCccc---ceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 126 LSGDKTGRLLKYEKTTKEVT--ILLQGLAFA---NGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~--~~~~~~~~~---~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
.++.|..||..++... ........+ .-+.++|++++++.+ ..++.+..|+...
T Consensus 308 ----~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~-~~d~~~~~w~l~~ 365 (456)
T KOG0266|consen 308 ----YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSA-SLDRTLKLWDLRS 365 (456)
T ss_pred ----CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEe-cCCCeEEEEEccC
Confidence 3888999999988732 222333334 788999999977766 5667888888763
No 97
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.95 E-value=0.0015 Score=52.97 Aligned_cols=119 Identities=10% Similarity=0.098 Sum_probs=74.4
Q ss_pred eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec
Q 046018 70 FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ 149 (310)
Q Consensus 70 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~ 149 (310)
|++++..+.....+... .. ..+.+++.+|+|+.+.+.... ....+..||.+......+.
T Consensus 41 l~~~~~~~~~~~~i~l~-~~---~~I~~~~WsP~g~~favi~g~----------------~~~~v~lyd~~~~~i~~~~- 99 (194)
T PF08662_consen 41 LFYLNEKNIPVESIELK-KE---GPIHDVAWSPNGNEFAVIYGS----------------MPAKVTLYDVKGKKIFSFG- 99 (194)
T ss_pred EEEEecCCCccceeecc-CC---CceEEEEECcCCCEEEEEEcc----------------CCcccEEEcCcccEeEeec-
Confidence 77776665543333111 11 137899999999966555421 1347888888643333332
Q ss_pred CCcccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeC-CCCCCeeEECCCCCEEEEEe
Q 046018 150 GLAFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAEL-PGFPDNVRSNSNGEFWVALH 215 (310)
Q Consensus 150 ~~~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~l~va~~ 215 (310)
....|.|.++|+|++|.++..+ ++.|..||.+. ...+... ......++++|+|+.+++..
T Consensus 100 -~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~-----~~~i~~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 100 -TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK-----KKKISTFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred -CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC-----CEEeeccccCcEEEEEEcCCCCEEEEEE
Confidence 3456889999999988777543 46799999763 2223221 12346789999998777654
No 98
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.90 E-value=0.0017 Score=55.51 Aligned_cols=165 Identities=15% Similarity=0.064 Sum_probs=93.1
Q ss_pred CCcceEEeCC-CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcc---cceEEEecCCCeEEEE
Q 046018 94 FTNDLDIDEH-KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAF---ANGVALSRDRTFILIA 169 (310)
Q Consensus 94 ~~~~i~~d~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~---~~gi~~~~d~~~lyv~ 169 (310)
+..+++++|. +..+.|+-. +.-..+++|+.+++.......... --.-+|++||++||.+
T Consensus 6 RgH~~a~~p~~~~avafaRR-----------------PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytT 68 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARR-----------------PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTT 68 (305)
T ss_pred cccceeeCCCCCeEEEEEeC-----------------CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEe
Confidence 5678888984 442333321 233588999988876543322211 2235689999999998
Q ss_pred ec----CCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCC-CEEEEEecCCccceeeeeeccccccEEeeccchhhh
Q 046018 170 ET----SNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNG-EFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQ 244 (310)
Q Consensus 170 ~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~ 244 (310)
+. ..+.|.+||.... ......+....-.|..+.+.+|| .|.||+.. |...+..|+....+.. +
T Consensus 69 End~~~g~G~IgVyd~~~~-~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG--------I~Thpd~GR~kLNl~t---M 136 (305)
T PF07433_consen 69 ENDYETGRGVIGVYDAARG-YRRIGEFPSHGIGPHELLLMPDGETLVVANGG--------IETHPDSGRAKLNLDT---M 136 (305)
T ss_pred ccccCCCcEEEEEEECcCC-cEEEeEecCCCcChhhEEEcCCCCEEEEEcCC--------CccCcccCceecChhh---c
Confidence 65 4679999997622 11122232222358999999999 78777643 4455555544333221 0
Q ss_pred hcccccCCCCceEEEEEC-CCCCEEEEEEcCCCCeecce-eEEEEeCCEEEEecC
Q 046018 245 LHSLLVGGKPHATAIKLS-EKGEVLEVLEDCEGKTLSFI-SEVEEKDGQLWMGSV 297 (310)
Q Consensus 245 ~~~~~~~~~~~~~~~~~d-~~g~~~~~~~~~~g~~~~~~-~~~~~~~g~l~vgs~ 297 (310)
+..++.+| .+|++++....+.......+ +-....+|.+|+|..
T Consensus 137 ----------~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q 181 (305)
T PF07433_consen 137 ----------QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQ 181 (305)
T ss_pred ----------CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEe
Confidence 12345664 45777776554332211112 223344667776653
No 99
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.89 E-value=0.0069 Score=50.43 Aligned_cols=204 Identities=15% Similarity=0.154 Sum_probs=97.9
Q ss_pred eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec
Q 046018 70 FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ 149 (310)
Q Consensus 70 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~ 149 (310)
|..+|+.+++.. ..... ......+...++..+++ +|+++ ..+.|+.+|.++|+...-..
T Consensus 5 l~~~d~~tG~~~-W~~~~-~~~~~~~~~~~~~~~~~-v~~~~------------------~~~~l~~~d~~tG~~~W~~~ 63 (238)
T PF13360_consen 5 LSALDPRTGKEL-WSYDL-GPGIGGPVATAVPDGGR-VYVAS------------------GDGNLYALDAKTGKVLWRFD 63 (238)
T ss_dssp EEEEETTTTEEE-EEEEC-SSSCSSEEETEEEETTE-EEEEE------------------TTSEEEEEETTTSEEEEEEE
T ss_pred EEEEECCCCCEE-EEEEC-CCCCCCccceEEEeCCE-EEEEc------------------CCCEEEEEECCCCCEEEEee
Confidence 667777666642 21111 11111222124445665 99985 27889999998887654332
Q ss_pred CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC----CCCeeEECCCCCEEEEEecCCccceeee
Q 046018 150 GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG----FPDNVRSNSNGEFWVALHAKKGLFGKLI 225 (310)
Q Consensus 150 ~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~p~~i~~d~~G~l~va~~~~~~~~~~~i 225 (310)
............+ ..+|+.. ..+.|+.+|...++..........+. .+....++ .+.++++...+. + .
T Consensus 64 ~~~~~~~~~~~~~-~~v~v~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~-l----~ 135 (238)
T PF13360_consen 64 LPGPISGAPVVDG-GRVYVGT-SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGK-L----V 135 (238)
T ss_dssp CSSCGGSGEEEET-TEEEEEE-TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSE-E----E
T ss_pred ccccccceeeecc-ccccccc-ceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCc-E----E
Confidence 2111122122334 4488775 44599999966442211101111111 11223333 344666654433 2 3
Q ss_pred eeccccccEEeeccchhhhh-----------cccccCCCCceEEEEECCCCCEEEEEEcCCCCe-----ecceeE-EEEe
Q 046018 226 LLNSWLGKTLLKLPLSFRQL-----------HSLLVGGKPHATAIKLSEKGEVLEVLEDCEGKT-----LSFISE-VEEK 288 (310)
Q Consensus 226 ~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~~-----~~~~~~-~~~~ 288 (310)
..+..+|+.+...+...... ..+.+. .+ .+...+.++.++.. ....|.. ...... ....
T Consensus 136 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~~~~~~~~~ 211 (238)
T PF13360_consen 136 ALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG--RVYVSSGDGRVVAV-DLATGEKLWSKPISGIYSLPSVD 211 (238)
T ss_dssp EEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT--EEEEECCTSSEEEE-ETTTTEEEEEECSS-ECECEECC
T ss_pred EEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC--EEEEEcCCCeEEEE-ECCCCCEEEEecCCCccCCceee
Confidence 44457788876665532110 011111 11 23333444443333 2222321 111222 4456
Q ss_pred CCEEEEecCCCCeEEEecc
Q 046018 289 DGQLWMGSVLMPFIGIYNR 307 (310)
Q Consensus 289 ~g~l~vgs~~~~~i~~~~~ 307 (310)
++.||+++ ....|..+|+
T Consensus 212 ~~~l~~~~-~~~~l~~~d~ 229 (238)
T PF13360_consen 212 GGTLYVTS-SDGRLYALDL 229 (238)
T ss_dssp CTEEEEEE-TTTEEEEEET
T ss_pred CCEEEEEe-CCCEEEEEEC
Confidence 89999999 6899999886
No 100
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.88 E-value=0.0066 Score=51.13 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=73.0
Q ss_pred ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
....+|++++++..||.+... ..|..++.++.-++++. ....+.|..|+...+|+ +.+++..
T Consensus 86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiP----L~g~~DpE~Ieyig~n~-fvi~dER------------ 148 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIP----LTGFSDPETIEYIGGNQ-FVIVDER------------ 148 (316)
T ss_pred ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEec----ccccCChhHeEEecCCE-EEEEehh------------
Confidence 457799999988888888766 35999999977655442 22356788899888887 7777743
Q ss_pred hcCCCCce--EEEEeCCCCeEEE------EecC---CcccceEEEecCCCeEEEEecCCc-eEEEEE
Q 046018 126 LSGDKTGR--LLKYEKTTKEVTI------LLQG---LAFANGVALSRDRTFILIAETSNC-RILRFW 180 (310)
Q Consensus 126 ~~~~~~g~--v~~~d~~~~~~~~------~~~~---~~~~~gi~~~~d~~~lyv~~~~~~-~i~~~~ 180 (310)
... ++.+|+++..... +... ..+=.|+|++|..++||++-..+. +|+.++
T Consensus 149 -----~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 149 -----DRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred -----cceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 344 4455665432221 1111 122359999999888999855432 565555
No 101
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.83 E-value=0.0015 Score=53.16 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=85.9
Q ss_pred ceeceEEEeCCCCcEEEEECCC---------ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYL---------GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ 117 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~---------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~ 117 (310)
.+...-.+|| +|+-|.+.+.. |..+.+.-+.++..+... ...+|+++.|.+.+.+|+.++.
T Consensus 109 nR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~-----v~IsNgl~Wd~d~K~fY~iDsl---- 178 (310)
T KOG4499|consen 109 NRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNC-----VGISNGLAWDSDAKKFYYIDSL---- 178 (310)
T ss_pred cccccCccCC-CCceeeeeeccccccccccccEEEEeccCCCceeeehh-----ccCCccccccccCcEEEEEccC----
Confidence 3444556788 89989888752 222222222333333221 2358999999998889999864
Q ss_pred hhhhhhhhhcCCCCceE--EEEeCCCCeEEE---E---e----cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCC
Q 046018 118 RRQFMSSILSGDKTGRL--LKYEKTTKEVTI---L---L----QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPN 185 (310)
Q Consensus 118 ~~~~~~~~~~~~~~g~v--~~~d~~~~~~~~---~---~----~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~ 185 (310)
+-.| +.||..+|.+.. + . .....|.|++++.+|+ |||+-...++|.++|+.+++
T Consensus 179 -------------n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~-L~Va~~ng~~V~~~dp~tGK 244 (310)
T KOG4499|consen 179 -------------NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGN-LYVATFNGGTVQKVDPTTGK 244 (310)
T ss_pred -------------ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCc-EEEEEecCcEEEEECCCCCc
Confidence 3345 444555554321 1 1 1234689999999887 99998888999999987543
Q ss_pred CCcceeeeeCC-CCCCeeEECCCC--CEEEEEecC
Q 046018 186 SGKQDVFAELP-GFPDNVRSNSNG--EFWVALHAK 217 (310)
Q Consensus 186 ~~~~~~~~~~~-~~p~~i~~d~~G--~l~va~~~~ 217 (310)
.- .+. .+| ......|+-..+ -+|+.+...
T Consensus 245 ~L-~ei--klPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 245 IL-LEI--KLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred EE-EEE--EcCCCceEEEEecCCCccEEEEEehhc
Confidence 21 111 122 123556665442 466665543
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.82 E-value=0.013 Score=51.75 Aligned_cols=143 Identities=10% Similarity=0.085 Sum_probs=86.6
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEE-eCCCCeE-EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVV-GPEGGLA-TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~-d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
....++...+ .|.-++.....+-+.| |.+++.. +...+. .........+++|||. |+.+..
T Consensus 304 ~~V~~ls~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~---~s~v~~ts~~fHpDgL-ifgtgt------------ 366 (506)
T KOG0289|consen 304 EPVTGLSLHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDE---TSDVEYTSAAFHPDGL-IFGTGT------------ 366 (506)
T ss_pred ccceeeeecc-CCcEEEEecCCceEEEEEccCCcEEEEEeec---cccceeEEeeEcCCce-EEeccC------------
Confidence 4456888888 7765555555554444 6666653 222221 1223467789999997 877653
Q ss_pred hhcCCCCceEEEEeCCCCeEEEEecCCcc-cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC-CCCCee
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTILLQGLAF-ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP-GFPDNV 202 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~-~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~p~~i 202 (310)
.++.|-.||.+++....-.++... ...|.|+.+|=+| ++....++|..||++.. .....+.... .....+
T Consensus 367 -----~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~L-at~add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~ 438 (506)
T KOG0289|consen 367 -----PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWL-ATAADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSL 438 (506)
T ss_pred -----CCceEEEEEcCCccccccCCCCCCceeEEEeccCceEE-EEEecCCeEEEEEehhh--cccceeeccccccceeE
Confidence 378888999887653322223323 3679999766444 44466777999998732 1222222111 234678
Q ss_pred EECCCCCEEEEE
Q 046018 203 RSNSNGEFWVAL 214 (310)
Q Consensus 203 ~~d~~G~l~va~ 214 (310)
.+|..|.+.+..
T Consensus 439 ~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 439 SFDQSGTYLGIA 450 (506)
T ss_pred EEcCCCCeEEee
Confidence 999999766655
No 103
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.82 E-value=0.002 Score=52.24 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=71.8
Q ss_pred ceeceEEEeCCCCcEEEEECC--CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY--LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
+..+.++++|++.++.+.... ..|..+|.+...+..+ +....|.|..+|+|+++.++..+
T Consensus 60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~-------~~~~~n~i~wsP~G~~l~~~g~~----------- 121 (194)
T PF08662_consen 60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF-------GTQPRNTISWSPDGRFLVLAGFG----------- 121 (194)
T ss_pred CceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee-------cCCCceEEEECCCCCEEEEEEcc-----------
Confidence 347899999933344444322 3477788874433222 11356789999999966655522
Q ss_pred hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC-----CceEEEEEccCC
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS-----NCRILRFWLHGP 184 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~~~ 184 (310)
...|.|..||.++.+... .........++++|||+++..+.+. ++.+.+|+..|.
T Consensus 122 ----n~~G~l~~wd~~~~~~i~-~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 122 ----NLNGDLEFWDVRKKKKIS-TFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ----CCCcEEEEEECCCCEEee-ccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 235789999987543322 2233446789999999987766542 456666666543
No 104
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.82 E-value=0.012 Score=49.37 Aligned_cols=157 Identities=10% Similarity=0.042 Sum_probs=98.8
Q ss_pred eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
-..+-. ++.|.-+....-...+|.++++.+...... ...+..+.+.| +++ .||+..-
T Consensus 150 cC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH----~gDV~slsl~p~~~n-tFvSg~c---------------- 207 (343)
T KOG0286|consen 150 CCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGH----TGDVMSLSLSPSDGN-TFVSGGC---------------- 207 (343)
T ss_pred EEEEcC-CCceEecCCCceEEEEEcccceEEEEecCC----cccEEEEecCCCCCC-eEEeccc----------------
Confidence 344434 555554433334667788888765443321 12355677788 888 8887643
Q ss_pred CCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC--CCCCeeEECC
Q 046018 130 KTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP--GFPDNVRSNS 206 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~ 206 (310)
+..-..||...+.... +.......|.+.|.|+|. -+++.+.+.....||+.... +...+...+ .....++++.
T Consensus 208 -D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~--~~a~ys~~~~~~gitSv~FS~ 283 (343)
T KOG0286|consen 208 -DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQ--ELAVYSHDSIICGITSVAFSK 283 (343)
T ss_pred -ccceeeeeccCcceeEeecccccccceEEEccCCC-eeeecCCCceeEEEeecCCc--EEeeeccCcccCCceeEEEcc
Confidence 5567778876665544 433445689999999997 78888888999999987531 223333211 2347799999
Q ss_pred CCCEEEEEecCCccceeeeeeccccccEEee
Q 046018 207 NGEFWVALHAKKGLFGKLILLNSWLGKTLLK 237 (310)
Q Consensus 207 ~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~ 237 (310)
.|+|..+.+....+ ...+.-.++....
T Consensus 284 SGRlLfagy~d~~c----~vWDtlk~e~vg~ 310 (343)
T KOG0286|consen 284 SGRLLFAGYDDFTC----NVWDTLKGERVGV 310 (343)
T ss_pred cccEEEeeecCCce----eEeeccccceEEE
Confidence 99999887766553 3334444554443
No 105
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.80 E-value=0.00046 Score=64.24 Aligned_cols=119 Identities=18% Similarity=0.302 Sum_probs=77.4
Q ss_pred ccceeceEEEeCCCCcEEEEECC-C-------------------ceEEEeCCCC-------eEEEEEeecC---------
Q 046018 45 ICGRPLGIRFDKKTGDLYIADAY-L-------------------GFQVVGPEGG-------LATQLVTEAA--------- 88 (310)
Q Consensus 45 ~~~~p~gl~~d~~~g~l~v~~~~-~-------------------gi~~~d~~~~-------~~~~~~~~~~--------- 88 (310)
...+|.++.+++.+++||++... . .|++++++.. .+..+.....
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 45789999999988999999632 1 3999987765 4433333211
Q ss_pred ----CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce-----------EEEEeCCCCeEEEEecCC--
Q 046018 89 ----GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR-----------LLKYEKTTKEVTILLQGL-- 151 (310)
Q Consensus 89 ----~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~-----------v~~~d~~~~~~~~~~~~~-- 151 (310)
...+..|-.|+++++|+ |||+......... +......|. +...++.+++++.+....
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~-----l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~g 501 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNN-----LPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNG 501 (524)
T ss_pred CcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcc-----cccccccCceeeeeecccceeeeccccccceeeeccCCCC
Confidence 23466899999999999 9999865321100 000011121 445567777777765433
Q ss_pred cccceEEEecCCCeEEEE
Q 046018 152 AFANGVALSRDRTFILIA 169 (310)
Q Consensus 152 ~~~~gi~~~~d~~~lyv~ 169 (310)
...-|++++||++.||+.
T Consensus 502 aE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 502 AEITGPCFSPDGRTLFVN 519 (524)
T ss_pred cccccceECCCCCEEEEE
Confidence 335699999999999885
No 106
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.74 E-value=0.0042 Score=50.91 Aligned_cols=178 Identities=12% Similarity=0.099 Sum_probs=102.7
Q ss_pred EeCCCCC-eEEEEEeccccccccCCCCCccccccceece---EEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCC
Q 046018 14 WQGDELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPLG---IRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAG 89 (310)
Q Consensus 14 ~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g---l~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~ 89 (310)
++.|+.. .+++....+..+|...+..+. ....+++.+ +.+-..+..+.-+.....|..+|..++...+-...
T Consensus 108 f~~ds~~lltgg~ekllrvfdln~p~App-~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~--- 183 (334)
T KOG0278|consen 108 FSQDSNYLLTGGQEKLLRVFDLNRPKAPP-KEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF--- 183 (334)
T ss_pred ecccchhhhccchHHHhhhhhccCCCCCc-hhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec---
Confidence 4455544 343333333345666655333 333344443 33444255555443334588889988865433221
Q ss_pred ccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEE
Q 046018 90 QPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIA 169 (310)
Q Consensus 90 ~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~ 169 (310)
-..++++.++++|+ +..... .+.|..||+++-....-..-.-..+.-.+.|+.. .||+
T Consensus 184 --~s~VtSlEvs~dG~-ilTia~------------------gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~-~fVa 241 (334)
T KOG0278|consen 184 --NSPVTSLEVSQDGR-ILTIAY------------------GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE-FFVA 241 (334)
T ss_pred --CCCCcceeeccCCC-EEEEec------------------CceeEEeccccccceeeccCccccccccccCCCc-eEEe
Confidence 13578899999999 444431 4568889986532221111122234556788875 8998
Q ss_pred ecCCceEEEEEccCCCCCcceee-eeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018 170 ETSNCRILRFWLHGPNSGKQDVF-AELPGFPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 170 ~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~p~~i~~d~~G~l~va~~~~~~ 219 (310)
.-....+++||.+++. +...+ ..-++-...+.+.|+|.+|.+....+.
T Consensus 242 Gged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 242 GGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred cCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCce
Confidence 7777899999988542 12222 112233477899999999988777665
No 107
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.74 E-value=0.0078 Score=49.66 Aligned_cols=159 Identities=8% Similarity=0.104 Sum_probs=87.8
Q ss_pred ceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
..++..|+++.+.+++....|..+|.++.+.. .. .......+.++..-+++ +++.+.+
T Consensus 110 i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~---~~--~~~~~e~ne~~w~~~nd-~Fflt~G---------------- 167 (313)
T KOG1407|consen 110 INITWSPDGEYIAVGNKDDRITFIDARTYKIV---NE--EQFKFEVNEISWNNSND-LFFLTNG---------------- 167 (313)
T ss_pred eEEEEcCCCCEEEEecCcccEEEEEeccccee---eh--hcccceeeeeeecCCCC-EEEEecC----------------
Confidence 35666663444444444455666666654322 11 11123567788887788 6666633
Q ss_pred CCceEEEEeCCCCeEEEEecC---CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC-CeeEEC
Q 046018 130 KTGRLLKYEKTTKEVTILLQG---LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP-DNVRSN 205 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~~---~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d 205 (310)
.|.|-.+.-- .++++..- ...--.|.|+|+|+++-+. +....+..||++. +-..+.+..+. +| .-+.++
T Consensus 168 -lG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~G-sADAlvSLWD~~E--LiC~R~isRld-wpVRTlSFS 240 (313)
T KOG1407|consen 168 -LGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATG-SADALVSLWDVDE--LICERCISRLD-WPVRTLSFS 240 (313)
T ss_pred -CceEEEEecc--ccccccccccCCcceEEEEECCCCceEeec-cccceeeccChhH--hhhheeecccc-CceEEEEec
Confidence 4544333211 23332211 1222367889999954443 4556777778763 22223333332 33 678999
Q ss_pred CCCCEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018 206 SNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS 241 (310)
Q Consensus 206 ~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 241 (310)
-+|++..+....+-+ =..+-++|..+.+++..
T Consensus 241 ~dg~~lASaSEDh~I----DIA~vetGd~~~eI~~~ 272 (313)
T KOG1407|consen 241 HDGRMLASASEDHFI----DIAEVETGDRVWEIPCE 272 (313)
T ss_pred cCcceeeccCccceE----EeEecccCCeEEEeecc
Confidence 999988777766631 12345788888887654
No 108
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.74 E-value=0.0017 Score=56.69 Aligned_cols=150 Identities=15% Similarity=0.126 Sum_probs=95.1
Q ss_pred ccccccceeceEEEeCCCCcEEEEECCCceEEE-eCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018 41 DIEHICGRPLGIRFDKKTGDLYIADAYLGFQVV-GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR 119 (310)
Q Consensus 41 ~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~-d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~ 119 (310)
.++....+...++++| +|+...+...+.-+++ |.++++.- +... .-.....++++.+||. |..+...
T Consensus 256 ~l~gH~~RVs~VafHP-sG~~L~TasfD~tWRlWD~~tk~El-L~QE---GHs~~v~~iaf~~DGS-L~~tGGl------ 323 (459)
T KOG0272|consen 256 DLEGHLARVSRVAFHP-SGKFLGTASFDSTWRLWDLETKSEL-LLQE---GHSKGVFSIAFQPDGS-LAATGGL------ 323 (459)
T ss_pred hhhcchhhheeeeecC-CCceeeecccccchhhcccccchhh-Hhhc---ccccccceeEecCCCc-eeeccCc------
Confidence 3444556777899999 8886666655444433 77765432 2122 1223578999999999 7776532
Q ss_pred hhhhhhhcCCCCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC--
Q 046018 120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP-- 196 (310)
Q Consensus 120 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-- 196 (310)
+..-..||..+|+...+..+. ....+++|+|.|- .+.+.+..+...+||+..... +...|
T Consensus 324 -----------D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs~Dnt~kVWDLR~r~~-----ly~ipAH 386 (459)
T KOG0272|consen 324 -----------DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGSSDNTCKVWDLRMRSE-----LYTIPAH 386 (459)
T ss_pred -----------cchhheeecccCcEEEEecccccceeeEeECCCce-EEeecCCCCcEEEeeeccccc-----ceecccc
Confidence 222345787788877665543 4467999999986 667777788888888764311 22223
Q ss_pred -CCCCeeEECC-CCCEEEEEecCCc
Q 046018 197 -GFPDNVRSNS-NGEFWVALHAKKG 219 (310)
Q Consensus 197 -~~p~~i~~d~-~G~l~va~~~~~~ 219 (310)
.....+++++ .|.+.++....+.
T Consensus 387 ~nlVS~Vk~~p~~g~fL~TasyD~t 411 (459)
T KOG0272|consen 387 SNLVSQVKYSPQEGYFLVTASYDNT 411 (459)
T ss_pred cchhhheEecccCCeEEEEcccCcc
Confidence 2346788887 5666666555443
No 109
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.73 E-value=0.0014 Score=61.35 Aligned_cols=173 Identities=12% Similarity=0.134 Sum_probs=103.5
Q ss_pred CcccccCcEEEEEeCCCCC-eEEEEEeccccccccCCCCCccccccceec-eEEEeCCCCcEEEEECC-CceEEE-eCCC
Q 046018 2 PYTGVADGRILKWQGDELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPL-GIRFDKKTGDLYIADAY-LGFQVV-GPEG 77 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-gl~~d~~~g~l~v~~~~-~gi~~~-d~~~ 77 (310)
+++...|..|+.|+-+... -|. +++ ...|. .+.+.| .| .|+++.. ++..++ ..+.
T Consensus 466 LlScSED~svRLWsl~t~s~~V~----------y~G---------H~~PVwdV~F~P-~G-yYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 466 LLSCSEDSSVRLWSLDTWSCLVI----------YKG---------HLAPVWDVQFAP-RG-YYFATASHDQTARLWSTDH 524 (707)
T ss_pred eeeccCCcceeeeecccceeEEE----------ecC---------CCcceeeEEecC-Cc-eEEEecCCCceeeeeeccc
Confidence 4566667777777776631 111 111 12333 355666 55 4555443 444443 2222
Q ss_pred CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc-ce
Q 046018 78 GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NG 156 (310)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~g 156 (310)
....++.. ........+.++|+.+ |+++.+ .+.+|..||..+|...++..+...| ..
T Consensus 525 ~~PlRifa----ghlsDV~cv~FHPNs~--Y~aTGS----------------sD~tVRlWDv~~G~~VRiF~GH~~~V~a 582 (707)
T KOG0263|consen 525 NKPLRIFA----GHLSDVDCVSFHPNSN--YVATGS----------------SDRTVRLWDVSTGNSVRIFTGHKGPVTA 582 (707)
T ss_pred CCchhhhc----ccccccceEEECCccc--ccccCC----------------CCceEEEEEcCCCcEEEEecCCCCceEE
Confidence 22112211 1234567789999987 444322 3667999999888777766665554 78
Q ss_pred EEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCcc
Q 046018 157 VALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGL 220 (310)
Q Consensus 157 i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~ 220 (310)
++++|+|++|- +....+.|..||..++.. ...+..-.+....+.++.+|++.++...++.+
T Consensus 583 l~~Sp~Gr~La-Sg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 583 LAFSPCGRYLA-SGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred EEEcCCCceEe-ecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeE
Confidence 99999998544 445678999999875421 11111113455789999999999998877763
No 110
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.72 E-value=0.0029 Score=55.27 Aligned_cols=148 Identities=9% Similarity=0.012 Sum_probs=95.1
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
.....|.++|++..|..+....-+..+|.+++...+.... + ....+.+.+.-|||.+ +|+.+
T Consensus 270 ~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~--~-~~~S~~sc~W~pDg~~-~V~Gs-------------- 331 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS--G-LGFSVSSCAWCPDGFR-FVTGS-------------- 331 (519)
T ss_pred CceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc--C-cCCCcceeEEccCCce-eEecC--------------
Confidence 4455789999665565554444578889999876554433 2 2345777888899984 44443
Q ss_pred cCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018 127 SGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN 205 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 205 (310)
.+..++.||.++....... ...+....+++++||+.++... .+..|..|+..... ....... ......+.++
T Consensus 332 ---~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~--dr~lise-~~~its~~iS 404 (519)
T KOG0293|consen 332 ---PDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARV--DRGLISE-EQPITSFSIS 404 (519)
T ss_pred ---CCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe-cccceeeechhhhh--hhccccc-cCceeEEEEc
Confidence 3677999998754332211 1223457899999999888774 56788888765321 1111111 1123678899
Q ss_pred CCCCEEEEEecCCc
Q 046018 206 SNGEFWVALHAKKG 219 (310)
Q Consensus 206 ~~G~l~va~~~~~~ 219 (310)
.+|.+.+.+.....
T Consensus 405 ~d~k~~LvnL~~qe 418 (519)
T KOG0293|consen 405 KDGKLALVNLQDQE 418 (519)
T ss_pred CCCcEEEEEcccCe
Confidence 99998888877665
No 111
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.72 E-value=0.03 Score=49.59 Aligned_cols=119 Identities=6% Similarity=-0.037 Sum_probs=60.3
Q ss_pred cccccccCCCCCcccccc-ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEE
Q 046018 29 SQRKECVRPFAPDIEHIC-GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVI 107 (310)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l 107 (310)
++.+|..+....++.... ....|..+++++..||.......|.++|.++.+.+.+...+.+-. .-...++..+++ .
T Consensus 62 ly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~--g~gt~v~n~d~t-~ 138 (386)
T PF14583_consen 62 LYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK--GYGTWVANSDCT-K 138 (386)
T ss_dssp EEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE--EEEEEEE-TTSS-E
T ss_pred eEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc--cccceeeCCCcc-E
Confidence 555566553323332222 122356667756677655555679999999988777766533221 112234466787 6
Q ss_pred EEEeCC--Cchh---hhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC
Q 046018 108 YFTDSS--TSFQ---RRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG 150 (310)
Q Consensus 108 ~v~~~~--~~~~---~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~ 150 (310)
++.... ..|. ...++.+++......+|+.+|.++|+.+++...
T Consensus 139 ~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~ 186 (386)
T PF14583_consen 139 LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED 186 (386)
T ss_dssp EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE
T ss_pred EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec
Confidence 665422 1221 133556667777888999999999998877543
No 112
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.70 E-value=0.028 Score=48.92 Aligned_cols=110 Identities=13% Similarity=0.161 Sum_probs=60.7
Q ss_pred eceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEE-----eCCCCEEEEEeCCCchhhhhhh
Q 046018 49 PLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDI-----DEHKGVIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~-----d~~g~~l~v~~~~~~~~~~~~~ 122 (310)
..-++++| +|+..+.....| |..+||++++. +.....+- ...+.+++. +|..+ .+++.+
T Consensus 160 VlcvawsP-Dgk~iASG~~dg~I~lwdpktg~~--~g~~l~gH-~K~It~Lawep~hl~p~~r-~las~s---------- 224 (480)
T KOG0271|consen 160 VLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQQ--IGRALRGH-KKWITALAWEPLHLVPPCR-RLASSS---------- 224 (480)
T ss_pred EEEEEECC-CcchhhccccCCeEEEecCCCCCc--ccccccCc-ccceeEEeecccccCCCcc-ceeccc----------
Confidence 44688899 877655544444 88899988863 32222111 113445553 34555 444443
Q ss_pred hhhhcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 123 SSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
++|.+..||...++......+...| ..+.+.-+| ++++.+..++|.+|+..
T Consensus 225 -------kDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 225 -------KDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRAL 276 (480)
T ss_pred -------CCCCEEEEEccCceEEEEeccCccceEEEEEcCCc--eEEecCCCceEEEEEcc
Confidence 3777888887666555444333332 345554333 44445666666666654
No 113
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.70 E-value=0.0017 Score=58.03 Aligned_cols=143 Identities=11% Similarity=0.146 Sum_probs=88.4
Q ss_pred eEEEeCCCCcEEEEECCCceEEEeCCCCeE-EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLA-TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
.++++.....+|.+. .++|-++|.....- .++.......+.++++.....+||+.|.++..
T Consensus 424 AvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe----------------- 485 (705)
T KOG0639|consen 424 AVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE----------------- 485 (705)
T ss_pred EEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccc-----------------
Confidence 444544233344332 23465666543211 12222222335568889999999997777652
Q ss_pred CCceEEEEeCCCCeEEEEec---CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCe---eE
Q 046018 130 KTGRLLKYEKTTKEVTILLQ---GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDN---VR 203 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~---~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~---i~ 203 (310)
...|..||......++-.+ ....-..++++||.+ |.++...++.|.+||+..+ ..+.+++|.+|| |.
T Consensus 486 -astlsiWDLAapTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq-----~~VrqfqGhtDGascId 558 (705)
T KOG0639|consen 486 -ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQ-----TLVRQFQGHTDGASCID 558 (705)
T ss_pred -cceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccc-----eeeecccCCCCCceeEE
Confidence 4568889987654443221 112235688999998 6666678899999997643 445566777776 67
Q ss_pred ECCCC-CEEEEEecCC
Q 046018 204 SNSNG-EFWVALHAKK 218 (310)
Q Consensus 204 ~d~~G-~l~va~~~~~ 218 (310)
+.++| +||.+..++.
T Consensus 559 is~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 559 ISKDGTKLWTGGLDNT 574 (705)
T ss_pred ecCCCceeecCCCccc
Confidence 78889 8999877654
No 114
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.69 E-value=0.011 Score=48.80 Aligned_cols=148 Identities=10% Similarity=0.067 Sum_probs=91.1
Q ss_pred ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCc-cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQ-PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
+..+.+++.. +|.=.+....+ -+..++.+..++. ...... .......++.+|...-++++.++
T Consensus 21 ~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~---~~~~~~gh~~svdql~w~~~~~d~~atas~----------- 85 (313)
T KOG1407|consen 21 QKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFR---KELVYRGHTDSVDQLCWDPKHPDLFATASG----------- 85 (313)
T ss_pred hcceEEEEcc-cCceeeecccCCceEEEEecchhhh---hhhcccCCCcchhhheeCCCCCcceEEecC-----------
Confidence 5667888888 66544444433 3444444433221 111111 11246778888765547777654
Q ss_pred hhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS 204 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 204 (310)
+..+.+||...++..........-.-|+++|+|+++.+. ...+.|..+|...-+..+. .+.+-..+.++.
T Consensus 86 ------dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~-~kdD~it~id~r~~~~~~~---~~~~~e~ne~~w 155 (313)
T KOG1407|consen 86 ------DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVG-NKDDRITFIDARTYKIVNE---EQFKFEVNEISW 155 (313)
T ss_pred ------CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEe-cCcccEEEEEecccceeeh---hcccceeeeeee
Confidence 556888987666665544444556679999999977766 4567888888653211110 112334578888
Q ss_pred CCCCCEEEEEecCCc
Q 046018 205 NSNGEFWVALHAKKG 219 (310)
Q Consensus 205 d~~G~l~va~~~~~~ 219 (310)
..++++++.+++.++
T Consensus 156 ~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGC 170 (313)
T ss_pred cCCCCEEEEecCCce
Confidence 888999999998776
No 115
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.69 E-value=0.0065 Score=52.25 Aligned_cols=199 Identities=13% Similarity=0.053 Sum_probs=117.9
Q ss_pred CcEEEEEeCCCCC-eE--EEEEeccccccccCCCCCcccc-ccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEE
Q 046018 8 DGRILKWQGDELG-WT--EFAVTTSQRKECVRPFAPDIEH-ICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQL 83 (310)
Q Consensus 8 ~~~i~~~~~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~-~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~ 83 (310)
-+.|++.+.|+.+ |+ +..+.++..+|.++.+...... ......|+++++..-.||-+.....|-.+|.+.+++.+
T Consensus 151 lgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR- 229 (460)
T KOG0285|consen 151 LGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR- 229 (460)
T ss_pred cceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHH-
Confidence 3589999998888 84 3445666667887744322221 22456699999866677777666668889998876532
Q ss_pred EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEec-
Q 046018 84 VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSR- 161 (310)
Q Consensus 84 ~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~- 161 (310)
.+.+ -+.....+...|.-+ +.++... +..+..||..+..-.....+...| ..+...|
T Consensus 230 --~YhG-HlS~V~~L~lhPTld-vl~t~gr-----------------Dst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 230 --HYHG-HLSGVYCLDLHPTLD-VLVTGGR-----------------DSTIRVWDIRTRASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred --Hhcc-ccceeEEEeccccce-eEEecCC-----------------cceEEEeeecccceEEEecCCCCcceeEEeecC
Confidence 2222 233566777888777 6666532 556777887655433334444444 3343333
Q ss_pred CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeec
Q 046018 162 DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKL 238 (310)
Q Consensus 162 d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~ 238 (310)
|.+ +| +.+.+..|..||...++. ...+..-......++..|+-+++.+...++ +..+. +.|.+++.+
T Consensus 289 dpq-vi-t~S~D~tvrlWDl~agkt--~~tlt~hkksvral~lhP~e~~fASas~dn------ik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 289 DPQ-VI-TGSHDSTVRLWDLRAGKT--MITLTHHKKSVRALCLHPKENLFASASPDN------IKQWKLPEGEFLQNL 356 (460)
T ss_pred CCc-eE-EecCCceEEEeeeccCce--eEeeecccceeeEEecCCchhhhhccCCcc------ceeccCCccchhhcc
Confidence 555 44 557788999999875422 111111122346677777777776655544 44433 566666554
No 116
>PTZ00420 coronin; Provisional
Probab=97.68 E-value=0.05 Score=51.31 Aligned_cols=120 Identities=10% Similarity=0.044 Sum_probs=75.6
Q ss_pred CCcceEEeCC-CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE--E-------EEecCCcccceEEEecCC
Q 046018 94 FTNDLDIDEH-KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV--T-------ILLQGLAFANGVALSRDR 163 (310)
Q Consensus 94 ~~~~i~~d~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~--~-------~~~~~~~~~~gi~~~~d~ 163 (310)
.+.+++++|+ ++ +.++.+. ++.|..||..++.. . .+.........++|+|++
T Consensus 76 ~V~~lafsP~~~~-lLASgS~-----------------DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g 137 (568)
T PTZ00420 76 SILDLQFNPCFSE-ILASGSE-----------------DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMN 137 (568)
T ss_pred CEEEEEEcCCCCC-EEEEEeC-----------------CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCC
Confidence 5788999996 66 6655533 77888898754321 1 111112335789999998
Q ss_pred CeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeec-cccccEEeecc
Q 046018 164 TFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLN-SWLGKTLLKLP 239 (310)
Q Consensus 164 ~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~~ 239 (310)
..++++...++.|.+||+..+.. ...+ ..+.....+.++++|++.++....+. +..+ ...++.+..+.
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~--~~~i-~~~~~V~SlswspdG~lLat~s~D~~-----IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKR--AFQI-NMPKKLSSLKWNIKGNLLSGTCVGKH-----MHIIDPRKQEIASSFH 206 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcE--EEEE-ecCCcEEEEEECCCCCEEEEEecCCE-----EEEEECCCCcEEEEEe
Confidence 86766667789999999875321 1111 12234578899999998887665554 3333 44555555443
No 117
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.68 E-value=0.023 Score=47.27 Aligned_cols=146 Identities=14% Similarity=0.199 Sum_probs=78.7
Q ss_pred CCcEEEEECCCceEEEeCCCCeEEEEEeecC--CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAA--GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL 135 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~ 135 (310)
++.||++.....++.+|..+++..--..... ......+...+++ +..++++. ..+.|+
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------------------~~g~l~ 135 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGT------------------SSGKLV 135 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEE------------------TCSEEE
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEe------------------ccCcEE
Confidence 6789999866679999988887532211211 1112223334444 44488776 267899
Q ss_pred EEeCCCCeEEEEecCCccc------------ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018 136 KYEKTTKEVTILLQGLAFA------------NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVR 203 (310)
Q Consensus 136 ~~d~~~~~~~~~~~~~~~~------------~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~ 203 (310)
.+|+++|+....... ..+ .+-.+..++ .+|++. .++.+..+|...+. ..+......+....
T Consensus 136 ~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~-~~g~~~~~d~~tg~----~~w~~~~~~~~~~~ 208 (238)
T PF13360_consen 136 ALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVISDG-RVYVSS-GDGRVVAVDLATGE----KLWSKPISGIYSLP 208 (238)
T ss_dssp EEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECCTT-EEEEEC-CTSSEEEEETTTTE----EEEEECSS-ECECE
T ss_pred EEecCCCcEEEEeec-CCCCCCcceeeecccccceEEECC-EEEEEc-CCCeEEEEECCCCC----EEEEecCCCccCCc
Confidence 999999977543322 111 122222244 688874 44556666766432 22422222334434
Q ss_pred ECCCCCEEEEEecCCccceeeeeeccccccEE
Q 046018 204 SNSNGEFWVALHAKKGLFGKLILLNSWLGKTL 235 (310)
Q Consensus 204 ~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~ 235 (310)
...++.||+++ ..+.+ ...+..+|+.+
T Consensus 209 ~~~~~~l~~~~-~~~~l----~~~d~~tG~~~ 235 (238)
T PF13360_consen 209 SVDGGTLYVTS-SDGRL----YALDLKTGKVV 235 (238)
T ss_dssp ECCCTEEEEEE-TTTEE----EEEETTTTEEE
T ss_pred eeeCCEEEEEe-CCCEE----EEEECCCCCEE
Confidence 55667888888 44432 33344555554
No 118
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.65 E-value=9.5e-05 Score=39.38 Aligned_cols=27 Identities=33% Similarity=0.652 Sum_probs=24.1
Q ss_pred cccceEEEecCCCeEEEEecCCceEEEE
Q 046018 152 AFANGVALSRDRTFILIAETSNCRILRF 179 (310)
Q Consensus 152 ~~~~gi~~~~d~~~lyv~~~~~~~i~~~ 179 (310)
..|.||+++++|+ +||+|+.+++|.+|
T Consensus 2 ~~P~gvav~~~g~-i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGN-IYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSE-EEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCC-EEEEECCCCEEEEC
Confidence 4699999998876 99999999999886
No 119
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.65 E-value=0.012 Score=55.21 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=56.1
Q ss_pred cEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEe--CCCCEEEEEeCCCchh---hhhhhhhhhcCCCCce
Q 046018 60 DLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDID--EHKGVIYFTDSSTSFQ---RRQFMSSILSGDKTGR 133 (310)
Q Consensus 60 ~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d--~~g~~l~v~~~~~~~~---~~~~~~~~~~~~~~g~ 133 (310)
.||+-+.. .+|.|++.+.-+...+...+.. ....++++. |+-.+++.... ..-. ..+.+ .. .....+.
T Consensus 143 ~~findk~n~Rvari~l~~~~~~~i~~iPn~---~~~Hg~~~~~~p~t~yv~~~~e-~~~PlpnDGk~l-~~-~~ey~~~ 216 (635)
T PRK02888 143 YLFINDKANTRVARIRLDVMKCDKITELPNV---QGIHGLRPQKIPRTGYVFCNGE-FRIPLPNDGKDL-DD-PKKYRSL 216 (635)
T ss_pred EEEEecCCCcceEEEECccEeeceeEeCCCc---cCccccCccccCCccEEEeCcc-cccccCCCCCEe-ec-ccceeEE
Confidence 36777665 4699999887777666554321 122333332 33332222211 0000 00000 00 1223566
Q ss_pred EEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEe
Q 046018 134 LLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAE 170 (310)
Q Consensus 134 v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~ 170 (310)
+..+|.++-+..........|..+++++||+++|++.
T Consensus 217 vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTs 253 (635)
T PRK02888 217 FTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTC 253 (635)
T ss_pred EEEEECccceEEEEEEeCCCcccceECCCCCEEEEec
Confidence 7888987644433222344789999999999999985
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.64 E-value=0.0084 Score=53.82 Aligned_cols=143 Identities=12% Similarity=0.130 Sum_probs=89.0
Q ss_pred eeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 48 RPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
...|++..+ +..+|++..+.+ +..++ ..++. +...... ....+.++|.|. +-++.
T Consensus 370 elwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~-wt~~~~d----~~~~~~fhpsg~-va~Gt--------------- 425 (626)
T KOG2106|consen 370 ELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLE-WTKIIED----PAECADFHPSGV-VAVGT--------------- 425 (626)
T ss_pred ceeeEEcCC-ChhheeeccCcceEEEcc--CCcee-EEEEecC----ceeEeeccCcce-EEEee---------------
Confidence 345788887 666677666655 33444 22221 1111111 245677888885 77766
Q ss_pred cCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC-CeeEEC
Q 046018 127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP-DNVRSN 205 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d 205 (310)
.+|+.+.+|.++.....+......-+.+.++|||.+|-+. +.++.||+|..+.... ....+..-.+.| ..+.++
T Consensus 426 ---~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg-s~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS 500 (626)
T KOG2106|consen 426 ---ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG-SHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWS 500 (626)
T ss_pred ---ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe-cCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeec
Confidence 4788999999876666555565566899999999976665 6778999998763211 111121111222 557778
Q ss_pred CCCCEEEEEecCCc
Q 046018 206 SNGEFWVALHAKKG 219 (310)
Q Consensus 206 ~~G~l~va~~~~~~ 219 (310)
+|++..++...+-.
T Consensus 501 ~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 501 SDSQFLVSNSGDYE 514 (626)
T ss_pred CCCceEEeccCceE
Confidence 88888887766554
No 121
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.63 E-value=0.075 Score=52.80 Aligned_cols=148 Identities=10% Similarity=0.079 Sum_probs=85.1
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEe-CCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDID-EHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
.....+++++.++.++++....+ |..+|..++........ ...+..+.+. ++|. .+++..
T Consensus 576 ~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-----~~~v~~v~~~~~~g~-~latgs------------ 637 (793)
T PLN00181 576 KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-----KANICCVQFPSESGR-SLAFGS------------ 637 (793)
T ss_pred CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-----CCCeEEEEEeCCCCC-EEEEEe------------
Confidence 45668889864667666666555 77788877654322221 1134556664 5677 555443
Q ss_pred hhcCCCCceEEEEeCCCCeE--EEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCC----CcceeeeeCCCC
Q 046018 125 ILSGDKTGRLLKYEKTTKEV--TILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNS----GKQDVFAELPGF 198 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~--~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~ 198 (310)
.++.|..||..+.+. ..+.........+.+. ++. .+++.+.++.|..||+..... .....+......
T Consensus 638 -----~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 638 -----ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred -----CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 378899999865432 2222122234567776 666 445556778999999863211 111112111223
Q ss_pred CCeeEECCCCCEEEEEecCCc
Q 046018 199 PDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 199 p~~i~~d~~G~l~va~~~~~~ 219 (310)
...+.++++|.+.++....+.
T Consensus 711 i~~v~~s~~~~~lasgs~D~~ 731 (793)
T PLN00181 711 KNFVGLSVSDGYIATGSETNE 731 (793)
T ss_pred eeEEEEcCCCCEEEEEeCCCE
Confidence 456889999987766665554
No 122
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.59 E-value=0.041 Score=49.10 Aligned_cols=145 Identities=12% Similarity=0.139 Sum_probs=93.8
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEE-eCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVV-GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~-d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
....+|+++. +|.+.++....|..|+ +..++.+..+ ...+++ +..+....+|++|.-+.
T Consensus 236 kdVT~L~Wn~-~G~~LatG~~~G~~riw~~~G~l~~tl-~~HkgP----I~slKWnk~G~yilS~~-------------- 295 (524)
T KOG0273|consen 236 KDVTSLDWNN-DGTLLATGSEDGEARIWNKDGNLISTL-GQHKGP----IFSLKWNKKGTYILSGG-------------- 295 (524)
T ss_pred CCcceEEecC-CCCeEEEeecCcEEEEEecCchhhhhh-hccCCc----eEEEEEcCCCCEEEecc--------------
Confidence 4567899998 8999998888885544 6665543333 221221 45677888888333332
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS 204 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 204 (310)
.+++...||..++..+...+-...| -.+.|-.+.. +++....++|+++..+... ....+..-.+....|.+
T Consensus 296 ----vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~--F~ts~td~~i~V~kv~~~~--P~~t~~GH~g~V~alk~ 367 (524)
T KOG0273|consen 296 ----VDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE--FATSSTDGCIHVCKVGEDR--PVKTFIGHHGEVNALKW 367 (524)
T ss_pred ----CCccEEEEeccCceEEEeeeeccCCccceEEecCce--EeecCCCceEEEEEecCCC--cceeeecccCceEEEEE
Confidence 4888999999888877655444445 4466654443 5666677899999876431 11222222345578999
Q ss_pred CCCCCEEEEEecCCc
Q 046018 205 NSNGEFWVALHAKKG 219 (310)
Q Consensus 205 d~~G~l~va~~~~~~ 219 (310)
++.|.|..++.....
T Consensus 368 n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 368 NPTGSLLASCSDDGT 382 (524)
T ss_pred CCCCceEEEecCCCe
Confidence 999999888877665
No 123
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.032 Score=49.87 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=71.7
Q ss_pred cceeceEEEeCCCCcEEEEECCCceEEEeCCCCeE---EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCc-----hh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLA---TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTS-----FQ 117 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~---~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~-----~~ 117 (310)
...+.+++.. .+.+|+++.. .+.+++....++ ..+....+....+.-..|+++|||+ |||+.-... +.
T Consensus 130 ~~~~~~~a~~--~~~~~~~n~~-~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~-Lyvs~G~~~~~~~aq~ 205 (399)
T COG2133 130 RLVYFGISEP--GGGLYVANRV-AIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGK-LYVTTGSNGDPALAQD 205 (399)
T ss_pred ceeeeEEEee--cCCceEEEEE-EEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCc-EEEEeCCCCCcccccC
Confidence 3456677764 3566777543 466666221222 2233322222356788999999998 999974420 00
Q ss_pred hhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceE
Q 046018 118 RRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRI 176 (310)
Q Consensus 118 ~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i 176 (310)
......-++ ......++..|..+...++...+..+|.|++|+|..+.||.++.+.+.+
T Consensus 206 ~~~~~Gk~~-r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~ 263 (399)
T COG2133 206 NVSLAGKVL-RIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDAL 263 (399)
T ss_pred cccccccee-eeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcc
Confidence 000000000 1112234445555555566677788899999999855599998877555
No 124
>PTZ00420 coronin; Provisional
Probab=97.56 E-value=0.049 Score=51.38 Aligned_cols=147 Identities=9% Similarity=0.043 Sum_probs=81.2
Q ss_pred ceeceEEEeCCCCc-EEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGD-LYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~-l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
.....+++++ ++. ++++.... .|..+|.++++....... ...+.+++++++|+ ++++...
T Consensus 126 ~~V~sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~-----~~~V~SlswspdG~-lLat~s~----------- 187 (568)
T PTZ00420 126 KKISIIDWNP-MNYYIMCSSGFDSFVNIWDIENEKRAFQINM-----PKKLSSLKWNIKGN-LLSGTCV----------- 187 (568)
T ss_pred CcEEEEEECC-CCCeEEEEEeCCCeEEEEECCCCcEEEEEec-----CCcEEEEEECCCCC-EEEEEec-----------
Confidence 4566899998 554 44443433 477889887764322211 12467899999999 6666532
Q ss_pred hhcCCCCceEEEEeCCCCeEEEEecCCccc-ceE-----EEecCCCeEEEEecCC---ceEEEEEccCCCCCcceeeeeC
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGV-----ALSRDRTFILIAETSN---CRILRFWLHGPNSGKQDVFAEL 195 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi-----~~~~d~~~lyv~~~~~---~~i~~~~~~~~~~~~~~~~~~~ 195 (310)
++.|..||+.+++........... ... .+++|++++..+.... +.|.+||.+.... ....+ ..
T Consensus 188 ------D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~-pl~~~-~l 259 (568)
T PTZ00420 188 ------GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS-ALVTM-SI 259 (568)
T ss_pred ------CCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC-ceEEE-Ee
Confidence 677999999877654322222211 111 2347877555543332 4799999873211 11111 12
Q ss_pred CCCCCee--EECC-CCCEEEEEecCCc
Q 046018 196 PGFPDNV--RSNS-NGEFWVALHAKKG 219 (310)
Q Consensus 196 ~~~p~~i--~~d~-~G~l~va~~~~~~ 219 (310)
...+..+ ..|+ +|.+|++..+.+.
T Consensus 260 d~~~~~L~p~~D~~tg~l~lsGkGD~t 286 (568)
T PTZ00420 260 DNASAPLIPHYDESTGLIYLIGKGDGN 286 (568)
T ss_pred cCCccceEEeeeCCCCCEEEEEECCCe
Confidence 1222222 3344 4788877765554
No 125
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.55 E-value=0.031 Score=47.18 Aligned_cols=112 Identities=11% Similarity=0.047 Sum_probs=79.0
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
.....|.+++.++.|.|+...+.+..++.....+...... +. -.-+.++.++-+ +|+++
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~--~~---plL~c~F~d~~~-~~~G~--------------- 72 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH--GA---PLLDCAFADEST-IVTGG--------------- 72 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec--CC---ceeeeeccCCce-EEEec---------------
Confidence 4556788888678899998776566666555444332222 11 133566667766 88876
Q ss_pred cCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
.+|.|.++|..++....+........+|...+... .+++.++.++|..||+..
T Consensus 73 ---~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 73 ---LDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRN 125 (323)
T ss_pred ---cCceEEEEEecCCcceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccc
Confidence 48899999999887776666566677888887555 678889999999999874
No 126
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.54 E-value=0.026 Score=46.03 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=91.9
Q ss_pred eceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 49 PLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
...++... ++.=+.+..+ ..++.+|.+++++.+-.. + -....|.+++..+.. +.++.+-
T Consensus 62 VlD~~~s~-Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r---g-H~aqVNtV~fNeesS-Vv~Sgsf-------------- 121 (307)
T KOG0316|consen 62 VLDAALSS-DNSKFASCGGDKAVQVWDVNTGKVDRRFR---G-HLAQVNTVRFNEESS-VVASGSF-------------- 121 (307)
T ss_pred eeeccccc-cccccccCCCCceEEEEEcccCeeeeecc---c-ccceeeEEEecCcce-EEEeccc--------------
Confidence 33455555 3333333333 349999999997643222 1 233688899988887 7776543
Q ss_pred CCCCceEEEEeCCCCeEEEEe---cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC-CeeE
Q 046018 128 GDKTGRLLKYEKTTKEVTILL---QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP-DNVR 203 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~~~~~~---~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~i~ 203 (310)
+..+..||=.+...+++. +.......|.++ ++.+++.+..+++..||+.-+ +...+.-+.| ..+.
T Consensus 122 ---D~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G-----~l~sDy~g~pit~vs 190 (307)
T KOG0316|consen 122 ---DSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKG-----TLSSDYFGHPITSVS 190 (307)
T ss_pred ---cceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecc-----eeehhhcCCcceeEE
Confidence 556777876555554432 222223334443 347788889999999998743 2222322334 7799
Q ss_pred ECCCCCEEEEEecCCccceeeeeeccccccEEeec
Q 046018 204 SNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL 238 (310)
Q Consensus 204 ~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~ 238 (310)
+.++|+.-.+..-+..+ -+.+..+|++++.+
T Consensus 191 ~s~d~nc~La~~l~stl----rLlDk~tGklL~sY 221 (307)
T KOG0316|consen 191 FSKDGNCSLASSLDSTL----RLLDKETGKLLKSY 221 (307)
T ss_pred ecCCCCEEEEeecccee----eecccchhHHHHHh
Confidence 99999866655444431 24455677776554
No 127
>PTZ00421 coronin; Provisional
Probab=97.54 E-value=0.022 Score=53.00 Aligned_cols=120 Identities=11% Similarity=0.087 Sum_probs=73.4
Q ss_pred CCcceEEeC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE--------EEEecCCcccceEEEecCCC
Q 046018 94 FTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV--------TILLQGLAFANGVALSRDRT 164 (310)
Q Consensus 94 ~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~--------~~~~~~~~~~~gi~~~~d~~ 164 (310)
.+.+++++| +++ ++++.+. ++.|..||..++.. ..+.........++|+|++.
T Consensus 77 ~V~~v~fsP~d~~-~LaSgS~-----------------DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~ 138 (493)
T PTZ00421 77 PIIDVAFNPFDPQ-KLFTASE-----------------DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAM 138 (493)
T ss_pred CEEEEEEcCCCCC-EEEEEeC-----------------CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCC
Confidence 468899999 777 5555432 77888898754421 11211123356899999865
Q ss_pred eEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeec-cccccEEeec
Q 046018 165 FILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLN-SWLGKTLLKL 238 (310)
Q Consensus 165 ~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~ 238 (310)
.++++...++.|.+||+..+.. ...+.........+++.++|++.++....+. +..+ ...++.+..+
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~~--~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-----IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGKA--VEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-----LNIIDPRDGTIVSSV 206 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCeE--EEEEcCCCCceEEEEEECCCCEEEEecCCCE-----EEEEECCCCcEEEEE
Confidence 4666667788999999874311 1122112233467889999988777665554 3343 3455555443
No 128
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.53 E-value=0.0082 Score=52.86 Aligned_cols=159 Identities=18% Similarity=0.247 Sum_probs=88.2
Q ss_pred ccceeceEEEeCCCCcEEEEECCCc------eEEEeCCC--C---eEEEE--Ee--ecCCccc----cCCcceEEeCCCC
Q 046018 45 ICGRPLGIRFDKKTGDLYIADAYLG------FQVVGPEG--G---LATQL--VT--EAAGQPL----RFTNDLDIDEHKG 105 (310)
Q Consensus 45 ~~~~p~gl~~d~~~g~l~v~~~~~g------i~~~d~~~--~---~~~~~--~~--~~~~~~~----~~~~~i~~d~~g~ 105 (310)
..+...||+.++.++++|+...... ++.+.... + .++.. .. ...+.+. ..+.+|++.++|.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3467789999964778777766544 55554332 1 11111 00 0112222 2567999989998
Q ss_pred EEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE-EEE--ecCC-------------cccceEEEecCCCeEEEE
Q 046018 106 VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV-TIL--LQGL-------------AFANGVALSRDRTFILIA 169 (310)
Q Consensus 106 ~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~--~~~~-------------~~~~gi~~~~d~~~lyv~ 169 (310)
+||++....- ......|++++++ |+. +.+ .... ....+|+++|||+.||++
T Consensus 98 -~~is~E~~~~-----------~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 98 -FWISSEGGRT-----------GGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred -EEEEeCCccC-----------CCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 9999865200 0012679999987 544 222 1111 123589999999988876
Q ss_pred ecCC---------------ceEEEEEccCCCCCcceeeeeC--------CCCCCeeEECCCCCEEEEEec
Q 046018 170 ETSN---------------CRILRFWLHGPNSGKQDVFAEL--------PGFPDNVRSNSNGEFWVALHA 216 (310)
Q Consensus 170 ~~~~---------------~~i~~~~~~~~~~~~~~~~~~~--------~~~p~~i~~d~~G~l~va~~~ 216 (310)
.... -+|+.|++........+..-.+ ...+..+..-++|+|+|-...
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~ 234 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD 234 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence 5432 3577777653110011111111 123445666678888887765
No 129
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.51 E-value=0.00088 Score=57.88 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=93.2
Q ss_pred eceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 49 PLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
..-+.++| +|...+...++- +..+|+++... +... .+ -.+-.-.|+.+|||. ..++..
T Consensus 118 Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp--~~t~-Kg-H~~WVlcvawsPDgk-~iASG~--------------- 176 (480)
T KOG0271|consen 118 VLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETP--LFTC-KG-HKNWVLCVAWSPDGK-KIASGS--------------- 176 (480)
T ss_pred EEEEEecC-CCceEEecCCCceEEeeccCCCCc--ceee-cC-CccEEEEEEECCCcc-hhhccc---------------
Confidence 33677888 887777766644 55558776542 2222 11 123566788999998 554432
Q ss_pred CCCCceEEEEeCCCCeEEE--EecCCcccceEEEec-----CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC---
Q 046018 128 GDKTGRLLKYEKTTKEVTI--LLQGLAFANGVALSR-----DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG--- 197 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~~~~--~~~~~~~~~gi~~~~-----d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--- 197 (310)
.+|.|..|||++|+..- +..--....++++-| +.+ ++++.+..+.+.+||...+ ..+..+.+
T Consensus 177 --~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~-----~~~~~lsgHT~ 248 (480)
T KOG0271|consen 177 --KDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLG-----TCVRTLSGHTA 248 (480)
T ss_pred --cCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCc-----eEEEEeccCcc
Confidence 48999999999886542 211223356777766 444 6777788999999997632 22222222
Q ss_pred CCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeec
Q 046018 198 FPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKL 238 (310)
Q Consensus 198 ~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~ 238 (310)
....+....+|.||-+..+.. |..+. .+|++...+
T Consensus 249 ~VTCvrwGG~gliySgS~Drt------Ikvw~a~dG~~~r~l 284 (480)
T KOG0271|consen 249 SVTCVRWGGEGLIYSGSQDRT------IKVWRALDGKLCREL 284 (480)
T ss_pred ceEEEEEcCCceEEecCCCce------EEEEEccchhHHHhh
Confidence 224566677777777665544 44443 345554444
No 130
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.50 E-value=0.13 Score=51.21 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=69.0
Q ss_pred eeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhhh
Q 046018 48 RPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
....+++++..+...++....+ |..+|..+++....... -...+.++++++ ++. ++++...
T Consensus 534 ~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~----H~~~V~~l~~~p~~~~-~L~Sgs~------------ 596 (793)
T PLN00181 534 KLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE----HEKRVWSIDYSSADPT-LLASGSD------------ 596 (793)
T ss_pred ceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC----CCCCEEEEEEcCCCCC-EEEEEcC------------
Confidence 3456777763445444444444 77778887654322211 112477899986 677 6666533
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEec-CCCeEEEEecCCceEEEEEccC
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSR-DRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~-d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
++.|..||..++..............+.+.+ ++. ++++.+.++.|..||...
T Consensus 597 -----Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~-~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 597 -----DGSVKLWSINQGVSIGTIKTKANICCVQFPSESGR-SLAFGSADHKVYYYDLRN 649 (793)
T ss_pred -----CCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCC-EEEEEeCCCeEEEEECCC
Confidence 7889999987665433222223445677754 566 555557788999999864
No 131
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.50 E-value=0.085 Score=49.24 Aligned_cols=190 Identities=15% Similarity=0.125 Sum_probs=88.4
Q ss_pred ceEEeCCCCEEEEEeCCC---chhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC-------cccceEEEe----cC
Q 046018 97 DLDIDEHKGVIYFTDSST---SFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL-------AFANGVALS----RD 162 (310)
Q Consensus 97 ~i~~d~~g~~l~v~~~~~---~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-------~~~~gi~~~----~d 162 (310)
..++++.+.++|+..... .|..... .......+.|+.+|.++|+..-..... ..+....+. -+
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~---~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRT---PGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccC---CCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 357776555588886431 0000000 000112457999999999876533211 111111222 13
Q ss_pred CC---eEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCc-------------cceeee
Q 046018 163 RT---FILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKG-------------LFGKLI 225 (310)
Q Consensus 163 ~~---~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~-------------~~~~~i 225 (310)
++ .+|+. +.++.|+.+|..+++. ++.. .. -.++..++ +.+|+....... .-....
T Consensus 298 g~~~~~V~~g-~~~G~l~ald~~tG~~----~W~~~~~--~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 298 GKPVPAIVHA-PKNGFFYVLDRTTGKL----ISARPEV--EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred CCeeEEEEEE-CCCceEEEEECCCCcE----eeEeEee--ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEE
Confidence 33 35554 6778999999875422 1211 10 02233443 556554311000 001113
Q ss_pred eeccccccEEeeccch---------hhh-------hcccccCCCCceEEEEECC-CCCEEEEEEcCCCCeecceeEEEEe
Q 046018 226 LLNSWLGKTLLKLPLS---------FRQ-------LHSLLVGGKPHATAIKLSE-KGEVLEVLEDCEGKTLSFISEVEEK 288 (310)
Q Consensus 226 ~~~~~~g~~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~d~-~g~~~~~~~~~~g~~~~~~~~~~~~ 288 (310)
..+..+|+.+...+.. ... .....+.+.....+.++|. +|+++-.+..+.+.. ..+ .+...
T Consensus 370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~-a~P-~~~~~ 447 (488)
T cd00216 370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQ-ATP-MTYEV 447 (488)
T ss_pred EEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEECCCCce-EcC-EEEEe
Confidence 4445667766555433 000 0012222233456677875 477776665433221 111 11245
Q ss_pred CCEEEEecCCC
Q 046018 289 DGQLWMGSVLM 299 (310)
Q Consensus 289 ~g~l~vgs~~~ 299 (310)
+|++|+++...
T Consensus 448 ~g~~yv~~~~g 458 (488)
T cd00216 448 NGKQYVGVMVG 458 (488)
T ss_pred CCEEEEEEEec
Confidence 88999998644
No 132
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.49 E-value=0.0013 Score=59.92 Aligned_cols=119 Identities=16% Similarity=0.195 Sum_probs=74.3
Q ss_pred cceeceEEEeCCCCcEEEEECCC-----------------ceEEEeCCCC-------eEEEEEeecCCcc----------
Q 046018 46 CGRPLGIRFDKKTGDLYIADAYL-----------------GFQVVGPEGG-------LATQLVTEAAGQP---------- 91 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~~-----------------gi~~~d~~~~-------~~~~~~~~~~~~~---------- 91 (310)
-.+|.++++.+..|++|++.... .|+++-+.++ +...+........
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 35799999999888999987531 2888877665 4454544321111
Q ss_pred ---ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCc--ccceEEEecCCCeE
Q 046018 92 ---LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLA--FANGVALSRDRTFI 166 (310)
Q Consensus 92 ---~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~--~~~gi~~~~d~~~l 166 (310)
+..|-+|++|+.|+ ||+.+....-..+.. . .....+..=++.+++++.+..... .-.|++++||++.|
T Consensus 496 ~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~----~--~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~Tl 568 (616)
T COG3211 496 ANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNR----F--RGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTL 568 (616)
T ss_pred cccccCCCceEECCCCC-EEEEecCCCCccCcc----c--ccccccccCCCccceeeeeccCCCcceeecceeCCCCceE
Confidence 23488999999999 999986521000000 0 001123334566666666554433 35699999999999
Q ss_pred EEEec
Q 046018 167 LIAET 171 (310)
Q Consensus 167 yv~~~ 171 (310)
||.-+
T Consensus 569 FV~vQ 573 (616)
T COG3211 569 FVNVQ 573 (616)
T ss_pred EEEec
Confidence 98643
No 133
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.44 E-value=0.054 Score=46.01 Aligned_cols=164 Identities=12% Similarity=-0.005 Sum_probs=95.1
Q ss_pred eccccccccC-CCCCccccccceeceEEEeCCCC--cEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC
Q 046018 27 TTSQRKECVR-PFAPDIEHICGRPLGIRFDKKTG--DLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH 103 (310)
Q Consensus 27 ~~~~~~~~~~-~~~~~~~~~~~~p~gl~~d~~~g--~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 103 (310)
..|..||... .+...+....+....+.+.+.-- .|.-+...+.|..++...=.. .....+-. ..+++|++.|.
T Consensus 63 etI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~---~~slK~H~-~~Vt~lsiHPS 138 (362)
T KOG0294|consen 63 ETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL---LKSLKAHK-GQVTDLSIHPS 138 (362)
T ss_pred CcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE---eeeecccc-cccceeEecCC
Confidence 4455555322 22233344456677777776221 455554444476666543222 12222222 24899999999
Q ss_pred CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 104 KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 104 g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
|+ |-++..+ ++.+..||.-+|+...+..-...+.-+.|+|.|.+.++. ..++|-+|..+.
T Consensus 139 ~K-LALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~--~~~~i~i~q~d~ 198 (362)
T KOG0294|consen 139 GK-LALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS--GRNKIDIYQLDN 198 (362)
T ss_pred Cc-eEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE--eccEEEEEeccc
Confidence 99 8888754 666777887766655444334446669999999966665 346788887653
Q ss_pred CCCCcceeeeeCCCCCCeeEECCCCCEEEEEecC
Q 046018 184 PNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAK 217 (310)
Q Consensus 184 ~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~ 217 (310)
. +.-.....|..+-.+.+...+.|.|+..+.
T Consensus 199 A---~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 199 A---SVFREIENPKRILCATFLDGSELLVGGDNE 229 (362)
T ss_pred H---hHhhhhhccccceeeeecCCceEEEecCCc
Confidence 2 111111233445677777777777775443
No 134
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.43 E-value=0.056 Score=45.47 Aligned_cols=146 Identities=12% Similarity=0.099 Sum_probs=89.0
Q ss_pred eceEEEeCCCCcEEEEECCCc---eEEEeCC--CCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 49 PLGIRFDKKTGDLYIADAYLG---FQVVGPE--GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~~g---i~~~d~~--~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
....|+.| +|+...+..-.. ||.+..+ .+.. +......+ -..+.....+-+|++ |.-+ +
T Consensus 100 VMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~-~v~r~l~g-HtgylScC~f~dD~~-ilT~-S----------- 163 (343)
T KOG0286|consen 100 VMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNV-RVSRELAG-HTGYLSCCRFLDDNH-ILTG-S----------- 163 (343)
T ss_pred EEEEEECC-CCCeEEecCcCceeEEEecccccccccc-eeeeeecC-ccceeEEEEEcCCCc-eEec-C-----------
Confidence 44678889 777555543332 6666533 1211 12121111 123566777777887 6543 3
Q ss_pred hhhcCCCCceEEEEeCCCCeEEEEecCC-cccceEEEec-CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCe
Q 046018 124 SILSGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSR-DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDN 201 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~-d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~ 201 (310)
.+.+...||.++++......+. ...-.+.++| +++ .||+..-...-..||...+ ...+.|..-..-.+.
T Consensus 164 ------GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~ghesDINs 234 (343)
T KOG0286|consen 164 ------GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFEGHESDINS 234 (343)
T ss_pred ------CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC-eEEecccccceeeeeccCc--ceeEeecccccccce
Confidence 3667889999988776654433 3356788999 776 8888777778888888743 223334332233567
Q ss_pred eEECCCCCEEEEEecCCc
Q 046018 202 VRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 202 i~~d~~G~l~va~~~~~~ 219 (310)
+.+=|+|.-+++..+...
T Consensus 235 v~ffP~G~afatGSDD~t 252 (343)
T KOG0286|consen 235 VRFFPSGDAFATGSDDAT 252 (343)
T ss_pred EEEccCCCeeeecCCCce
Confidence 889999987777666553
No 135
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.40 E-value=0.0063 Score=57.67 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=91.0
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEE-eCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVV-GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~-d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
....|+++|. -+++.|+....|+..+ |.+.+.+..-.. ....+..+....... +++...
T Consensus 494 ~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-----l~~~~~~iv~hr~s~-l~a~~~------------- 553 (910)
T KOG1539|consen 494 GEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-----LGSSITGIVYHRVSD-LLAIAL------------- 553 (910)
T ss_pred CceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec-----cCCCcceeeeeehhh-hhhhhc-------------
Confidence 4566999998 8899999888886654 777654321111 112344555554444 333321
Q ss_pred hcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS 204 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 204 (310)
.+-.|..+|..+.++.+... -....+.++|+|||++|..+ +.++.|..||.-.+.. ...+. .+..+-++.+
T Consensus 554 ----ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisa-smD~tIr~wDlpt~~l--ID~~~-vd~~~~sls~ 625 (910)
T KOG1539|consen 554 ----DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISA-SMDSTIRTWDLPTGTL--IDGLL-VDSPCTSLSF 625 (910)
T ss_pred ----CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEe-ecCCcEEEEeccCcce--eeeEe-cCCcceeeEE
Confidence 13458888887665544332 23457899999999987766 6678999999864321 11111 2234578899
Q ss_pred CCCCCEEEEEecCC
Q 046018 205 NSNGEFWVALHAKK 218 (310)
Q Consensus 205 d~~G~l~va~~~~~ 218 (310)
+|.|.+....+.+.
T Consensus 626 SPngD~LAT~Hvd~ 639 (910)
T KOG1539|consen 626 SPNGDFLATVHVDQ 639 (910)
T ss_pred CCCCCEEEEEEecC
Confidence 99998888777653
No 136
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.051 Score=46.24 Aligned_cols=146 Identities=17% Similarity=0.210 Sum_probs=80.7
Q ss_pred eEEEeCCCCcEEEEEC-CCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 51 GIRFDKKTGDLYIADA-YLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~-~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
+..+.|.+.+..++.. ...-+.++....+-+.+.....+-....+....+++.|++||.++
T Consensus 111 ~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt------------------ 172 (405)
T KOG1273|consen 111 GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT------------------ 172 (405)
T ss_pred eeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEec------------------
Confidence 5555554545555443 222333333333333332222221223455667899999777766
Q ss_pred CCceEEEEeCCCCeEEEE--ecCCcccceEEEecCCCeEEEEecCCceEEEEEccC----CCCCccee---eee-CCCCC
Q 046018 130 KTGRLLKYEKTTKEVTIL--LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG----PNSGKQDV---FAE-LPGFP 199 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~--~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~----~~~~~~~~---~~~-~~~~p 199 (310)
..|.+..|+.++-++..- .........|.++..|++ ++.++..+.|..|+... +..+..+. +.+ ....+
T Consensus 173 sKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~-liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 173 SKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF-LIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred CcceEEEEecchheeeeeeeechheeeeEEEEeccCcE-EEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 378999999876544321 122345678889988885 44567888999998752 11122221 111 01122
Q ss_pred -CeeEECCCCCEEEEEe
Q 046018 200 -DNVRSNSNGEFWVALH 215 (310)
Q Consensus 200 -~~i~~d~~G~l~va~~ 215 (310)
..++++.+|...+|..
T Consensus 252 Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 252 WKKCCFSGDGEYVCAGS 268 (405)
T ss_pred hhheeecCCccEEEecc
Confidence 4689999997666654
No 137
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.06 Score=44.81 Aligned_cols=179 Identities=11% Similarity=0.058 Sum_probs=105.8
Q ss_pred CcccccCcEEEEEeCCCCC-eEEEEEeccccccccCCCCCccc-cccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCC
Q 046018 2 PYTGVADGRILKWQGDELG-WTEFAVTTSQRKECVRPFAPDIE-HICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGG 78 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~ 78 (310)
+++...++.|+.|...+.. |.- ++ .+. ........+|..| .|++.++..... +..+-..++
T Consensus 30 lAscg~Dk~vriw~~~~~~s~~c-----------k~----vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~ 93 (312)
T KOG0645|consen 30 LASCGTDKAVRIWSTSSGDSWTC-----------KT----VLDDGHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDG 93 (312)
T ss_pred EEeecCCceEEEEecCCCCcEEE-----------EE----eccccchheeeeeeecC-CCcEEEEeeccceEEEeecCCC
Confidence 3566677788888776422 541 11 111 1114556799999 888666656555 444444556
Q ss_pred eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCC-CCeEEEEe---cCCccc
Q 046018 79 LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKT-TKEVTILL---QGLAFA 154 (310)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~---~~~~~~ 154 (310)
.++-+... .+ .-+..-.++.+++|+ +..+-+. +..|+.|..+ +++++... +-....
T Consensus 94 efecv~~l-EG-HEnEVK~Vaws~sG~-~LATCSR-----------------DKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 94 EFECVATL-EG-HENEVKCVAWSASGN-YLATCSR-----------------DKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred ceeEEeee-ec-cccceeEEEEcCCCC-EEEEeeC-----------------CCeEEEEEecCCCcEEEEeeeccccccc
Confidence 66544333 11 234577899999999 5554432 4445555443 34565532 223345
Q ss_pred ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC---CCCeeEECCCCCEEEEEecCCc
Q 046018 155 NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG---FPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 155 ~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~p~~i~~d~~G~l~va~~~~~~ 219 (310)
..+.+.|-.. |+++.+..+.|..|+...+ ...+....+.+ ....++|++.|.-.+++...+.
T Consensus 154 K~V~WHPt~d-lL~S~SYDnTIk~~~~~~d--ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t 218 (312)
T KOG0645|consen 154 KHVIWHPTED-LLFSCSYDNTIKVYRDEDD--DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT 218 (312)
T ss_pred cEEEEcCCcc-eeEEeccCCeEEEEeecCC--CCeeEEEEecCccceEEEEEecCCCceEEEecCCcc
Confidence 7899999766 7888899999988875521 12333333322 3456888998865566655554
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.37 E-value=0.0043 Score=55.63 Aligned_cols=170 Identities=7% Similarity=0.054 Sum_probs=107.0
Q ss_pred eEEEEEeccccccccCCCCCcccc-ccceec--eEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCc
Q 046018 21 WTEFAVTTSQRKECVRPFAPDIEH-ICGRPL--GIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTN 96 (310)
Q Consensus 21 W~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~--gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~ 96 (310)
.++++.+++..||...+....-+. ....|. .|++++ +-+|-++.-..| |.++|.....+.+-. ++- .....
T Consensus 481 ivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~Vrqf---qGh-tDGas 555 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQF---QGH-TDGAS 555 (705)
T ss_pred EeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecc---cCC-CCCce
Confidence 788888999999987755322222 222343 788888 556666555544 888898866432221 221 12467
Q ss_pred ceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCce
Q 046018 97 DLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCR 175 (310)
Q Consensus 97 ~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~ 175 (310)
.|.+++||..||.+. .++.|..||..+++- .....+ ...-.+..+|.+.+|.|. +.++.
T Consensus 556 cIdis~dGtklWTGG------------------lDntvRcWDlregrq-lqqhdF~SQIfSLg~cP~~dWlavG-Mens~ 615 (705)
T KOG0639|consen 556 CIDISKDGTKLWTGG------------------LDNTVRCWDLREGRQ-LQQHDFSSQIFSLGYCPTGDWLAVG-MENSN 615 (705)
T ss_pred eEEecCCCceeecCC------------------Cccceeehhhhhhhh-hhhhhhhhhheecccCCCccceeee-cccCc
Confidence 888999999888665 377899999865432 222222 234566778888877765 77888
Q ss_pred EEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018 176 ILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~ 218 (310)
+++....+.. +-.+..-..-.-.+.|..-|..||++...+
T Consensus 616 vevlh~skp~---kyqlhlheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 616 VEVLHTSKPE---KYQLHLHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred EEEEecCCcc---ceeecccccEEEEEEecccCceeeecCchh
Confidence 9888765421 111111111224578889999999987655
No 139
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.36 E-value=0.13 Score=48.08 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=44.9
Q ss_pred eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCc---cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQ---PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~---~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
++++.. +++||+++..+.|+.+|.++++.. ........ ....-...++. ++. +|++.....+. .
T Consensus 104 g~~~~~-~~~V~v~~~~g~v~AlD~~TG~~~-W~~~~~~~~~~~~~i~ssP~v~-~~~-v~vg~~~~~~~---------~ 170 (488)
T cd00216 104 GVAYWD-PRKVFFGTFDGRLVALDAETGKQV-WKFGNNDQVPPGYTMTGAPTIV-KKL-VIIGSSGAEFF---------A 170 (488)
T ss_pred CcEEcc-CCeEEEecCCCeEEEEECCCCCEe-eeecCCCCcCcceEecCCCEEE-CCE-EEEeccccccc---------c
Confidence 344432 379999987767999999988753 21111111 00001122333 354 77765321110 0
Q ss_pred CCCCceEEEEeCCCCeEEE
Q 046018 128 GDKTGRLLKYEKTTKEVTI 146 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~~~~ 146 (310)
....+.|+.+|.++|+..-
T Consensus 171 ~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 171 CGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CCCCcEEEEEECCCCceee
Confidence 1125789999999887654
No 140
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.36 E-value=0.058 Score=50.19 Aligned_cols=148 Identities=9% Similarity=0.105 Sum_probs=89.1
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEE-EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQ-LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
.....||++.+++.|-++-..+-|-.+++..+-... +.. +.+...+.+++..+.++ |+-..
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~---g~~drsIE~L~W~e~~R-LFS~g-------------- 87 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIH---GPEDRSIESLAWAEGGR-LFSSG-------------- 87 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEe---cCCCCceeeEEEccCCe-EEeec--------------
Confidence 455689999877777666444447777887764322 222 33445788999998887 87655
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS 204 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 204 (310)
.+|.|.-||+.+.+.....+. ....-.|+++|.+..+-|. ..++-++-++...+.......+....+..-.+.+
T Consensus 88 ----~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Ig-cddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw 162 (691)
T KOG2048|consen 88 ----LSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIG-CDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSW 162 (691)
T ss_pred ----CCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEee-cCCceEEEEecCCceEEEEeecccccceEEEEEe
Confidence 378899999987766554433 3334678899888766665 4556555544332222222222212233345677
Q ss_pred CCCCC-EEEEEecC
Q 046018 205 NSNGE-FWVALHAK 217 (310)
Q Consensus 205 d~~G~-l~va~~~~ 217 (310)
+++|. |..++-++
T Consensus 163 ~~~~~~i~~Gs~Dg 176 (691)
T KOG2048|consen 163 NPTGTKIAGGSIDG 176 (691)
T ss_pred cCCccEEEecccCc
Confidence 77775 55555444
No 141
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.36 E-value=0.0082 Score=53.82 Aligned_cols=149 Identities=16% Similarity=0.158 Sum_probs=89.4
Q ss_pred ceeceEEEeCCCCcEEEEECC-Cc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY-LG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~-~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
....++.... . .-|++... +| |......++........+ .....+.+..++..+++..+.+
T Consensus 122 stvt~v~YN~-~-DeyiAsvs~gGdiiih~~~t~~~tt~f~~~---sgqsvRll~ys~skr~lL~~as------------ 184 (673)
T KOG4378|consen 122 STVTYVDYNN-T-DEYIASVSDGGDIIIHGTKTKQKTTTFTID---SGQSVRLLRYSPSKRFLLSIAS------------ 184 (673)
T ss_pred ceeEEEEecC-C-cceeEEeccCCcEEEEecccCccccceecC---CCCeEEEeecccccceeeEeec------------
Confidence 4556777765 3 23555444 33 666666555432222221 1223456667777774555443
Q ss_pred hhcCCCCceEEEEeCCCCeEEE-EecCCccc-ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTI-LLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV 202 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i 202 (310)
..|.|..||..+..... .......| .||+|+|-...|+++--...+|+.||...+... ..+....| -..+
T Consensus 185 -----d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~-~~l~y~~P--lstv 256 (673)
T KOG4378|consen 185 -----DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST-DRLTYSHP--LSTV 256 (673)
T ss_pred -----cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc-ceeeecCC--ccee
Confidence 38899999987433221 11223334 799999988878888788899999998743221 12222222 1578
Q ss_pred EECCCCCEEEEEecCCcc
Q 046018 203 RSNSNGEFWVALHAKKGL 220 (310)
Q Consensus 203 ~~d~~G~l~va~~~~~~~ 220 (310)
++.++|.+.++....+++
T Consensus 257 af~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 257 AFSECGTYLCAGNSKGEL 274 (673)
T ss_pred eecCCceEEEeecCCceE
Confidence 999999888887777763
No 142
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.35 E-value=0.11 Score=47.15 Aligned_cols=144 Identities=14% Similarity=0.160 Sum_probs=90.5
Q ss_pred eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
...|+.+- ++.|......+-|..++++......... + -...+..+++.+++.+||-++
T Consensus 282 qqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~---G-HnK~ITaLtv~~d~~~i~Sgs---------------- 339 (603)
T KOG0318|consen 282 QQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVIS---G-HNKSITALTVSPDGKTIYSGS---------------- 339 (603)
T ss_pred eEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheec---c-cccceeEEEEcCCCCEEEeec----------------
Confidence 34466654 3455555554448888888776332221 1 122567899999999676555
Q ss_pred CCCCceEEEEeCCCCeEEEEecC--CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018 128 GDKTGRLLKYEKTTKEVTILLQG--LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN 205 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~~~~~~~~--~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 205 (310)
.+|.|..|+..++..-.+... .....+++.+..+. ++.+ .+.+.|.+++..+...+.... ..++..|-++++.
T Consensus 340 --yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~-g~Dd~l~~~~~~~~~~t~~~~-~~lg~QP~~lav~ 414 (603)
T KOG0318|consen 340 --YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTI-GWDDTLRVISLKDNGYTKSEV-VKLGSQPKGLAVL 414 (603)
T ss_pred --cCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEE-ecCCeEEEEecccCcccccce-eecCCCceeEEEc
Confidence 389999999887766554322 23356787776454 5554 678899999876432222221 2345578899999
Q ss_pred CCCCEEEEEecCC
Q 046018 206 SNGEFWVALHAKK 218 (310)
Q Consensus 206 ~~G~l~va~~~~~ 218 (310)
++|.+.+......
T Consensus 415 ~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 415 SDGGTAVVACISD 427 (603)
T ss_pred CCCCEEEEEecCc
Confidence 9986666555544
No 143
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.35 E-value=0.11 Score=47.01 Aligned_cols=146 Identities=15% Similarity=0.115 Sum_probs=86.8
Q ss_pred ceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
...++.|-+.+|.+.-..+-++.++++++.+..-........-...-.+++.++|. +.-+|
T Consensus 204 ~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgD------------------ 264 (626)
T KOG2106|consen 204 FLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGD------------------ 264 (626)
T ss_pred EEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeec------------------
Confidence 35667775556666644444888999988765433332222225778899999999 77666
Q ss_pred CCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCC
Q 046018 130 KTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNG 208 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G 208 (310)
..|.++.|++.+.+..... .-....-++++..+|. |+ +.-.+++|..||-+=.+..+.+ +.+..|.++-++-. .+
T Consensus 265 S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-ll-SGgKDRki~~Wd~~y~k~r~~e-lPe~~G~iRtv~e~-~~ 340 (626)
T KOG2106|consen 265 SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LL-SGGKDRKIILWDDNYRKLRETE-LPEQFGPIRTVAEG-KG 340 (626)
T ss_pred CCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-Ee-ecCccceEEecccccccccccc-CchhcCCeeEEecC-CC
Confidence 3788999999766554422 2233456788888886 44 3566788988873311111111 11111334444443 23
Q ss_pred CEEEEEecCC
Q 046018 209 EFWVALHAKK 218 (310)
Q Consensus 209 ~l~va~~~~~ 218 (310)
.|+|++.++.
T Consensus 341 di~vGTtrN~ 350 (626)
T KOG2106|consen 341 DILVGTTRNF 350 (626)
T ss_pred cEEEeeccce
Confidence 4777776654
No 144
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.35 E-value=0.038 Score=45.14 Aligned_cols=146 Identities=11% Similarity=0.094 Sum_probs=86.8
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
+....+.++. +|+--++-.... |..+||..+.+.+... + -.+...+++...|.. -+.+-.
T Consensus 18 gaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYs---g-hG~EVlD~~~s~Dns-kf~s~G------------- 78 (307)
T KOG0316|consen 18 GAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYS---G-HGHEVLDAALSSDNS-KFASCG------------- 78 (307)
T ss_pred cceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeec---C-CCceeeecccccccc-ccccCC-------------
Confidence 5555677776 666333333334 5566887776543322 2 223456666666655 333321
Q ss_pred hcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEE
Q 046018 126 LSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRS 204 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~ 204 (310)
.+..++.||.++|+... +.......|.+.|..+.. ++++.+....+..||.......+.+.+.+....... +
T Consensus 79 ----gDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~S--i 151 (307)
T KOG0316|consen 79 ----GDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSS--I 151 (307)
T ss_pred ----CCceEEEEEcccCeeeeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhhhhcCceeE--E
Confidence 25579999999998765 334456689999987765 888888999999999876544444444442222223 3
Q ss_pred CCCCCEEEEEecCC
Q 046018 205 NSNGEFWVALHAKK 218 (310)
Q Consensus 205 d~~G~l~va~~~~~ 218 (310)
|-.+...++....+
T Consensus 152 ~v~~heIvaGS~DG 165 (307)
T KOG0316|consen 152 DVAEHEIVAGSVDG 165 (307)
T ss_pred EecccEEEeeccCC
Confidence 33444445544433
No 145
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=97.34 E-value=0.00097 Score=39.24 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=32.7
Q ss_pred ecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 148 LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 148 ~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
......|+|+++++.+++||+++...+.|.+.+.+|.
T Consensus 5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 4467789999999999999999999999999998763
No 146
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.013 Score=53.30 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=87.9
Q ss_pred EEeCCCCC--eEEEEEec---cccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc---eEEEeCCCCeEEEEE
Q 046018 13 KWQGDELG--WTEFAVTT---SQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG---FQVVGPEGGLATQLV 84 (310)
Q Consensus 13 ~~~~~~~~--W~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g---i~~~d~~~~~~~~~~ 84 (310)
.|.++... ...++..+ +..++..+..-..+....+.-...+++++..+|.++....| |+.+|..++.++++.
T Consensus 199 ~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt 278 (425)
T COG0823 199 AWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLT 278 (425)
T ss_pred ccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecc
Confidence 44554443 34444444 33335444333344444444456778883445555555543 999999988765532
Q ss_pred eecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCC
Q 046018 85 TEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRT 164 (310)
Q Consensus 85 ~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~ 164 (310)
.. .+ ... .=.++|||+.|+++.+.. ..-.|++++++++..+.+.........-.++|||+
T Consensus 279 ~~-~g--i~~--~Ps~spdG~~ivf~Sdr~---------------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 279 NG-FG--INT--SPSWSPDGSKIVFTSDRG---------------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred cC-Cc--ccc--CccCCCCCCEEEEEeCCC---------------CCcceEEECCCCCceeEeeccCCCCcCccCCCCCC
Confidence 21 11 111 345779999888887541 12369999999887777665555555677999999
Q ss_pred eEEEEecCCce--EEEEEcc
Q 046018 165 FILIAETSNCR--ILRFWLH 182 (310)
Q Consensus 165 ~lyv~~~~~~~--i~~~~~~ 182 (310)
++.+.....+. |..+++.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~ 358 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLA 358 (425)
T ss_pred EEEEEeccCCceeeEEeccC
Confidence 77666533333 4444443
No 147
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.34 E-value=0.072 Score=51.33 Aligned_cols=113 Identities=8% Similarity=0.027 Sum_probs=72.7
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
....+++... +.+.++...+-|.++....+....+...... -.++++++.+|+++.++. .
T Consensus 57 ~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~~~~iL~Rftl----p~r~~~v~g~g~~iaags-d------------- 116 (933)
T KOG1274|consen 57 ELVSSIACYS--NHFLTGSEQNTVLRYKFPSGEEDTILARFTL----PIRDLAVSGSGKMIAAGS-D------------- 116 (933)
T ss_pred ceeEEEeecc--cceEEeeccceEEEeeCCCCCccceeeeeec----cceEEEEecCCcEEEeec-C-------------
Confidence 4455677654 5666666666677776655554333332111 367899999999333333 2
Q ss_pred cCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 127 SGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
+-.|-.++..+...+....+...| -++.++|.+++|-++ +.++.|++|+++.+
T Consensus 117 ----D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs-s~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 117 ----DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS-SCDGKVQIWDLQDG 170 (933)
T ss_pred ----ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEE-ecCceEEEEEcccc
Confidence 334666777666665555555555 589999999955554 77899999998754
No 148
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.33 E-value=0.024 Score=51.19 Aligned_cols=172 Identities=13% Similarity=0.157 Sum_probs=94.6
Q ss_pred EEeCCCCcEEEEECCCc-eEEEeCCC--CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 53 RFDKKTGDLYIADAYLG-FQVVGPEG--GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 53 ~~d~~~g~l~v~~~~~g-i~~~d~~~--~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
.+.|...+.+++....| +..++.+. .++..+-....+..-..+...+++++|. ++.+.-
T Consensus 275 ~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc----------------- 336 (641)
T KOG0772|consen 275 CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGC----------------- 336 (641)
T ss_pred ccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcc-----------------
Confidence 46675666777777765 33334332 3333333333333334567788999999 644432
Q ss_pred CCceEEEEeCCCCeEEE------EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC-CCC-Ce
Q 046018 130 KTGRLLKYEKTTKEVTI------LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP-GFP-DN 201 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~------~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~p-~~ 201 (310)
.+|.|..|+.-+-...+ ..........|+|++||+. +.+-...+.+-+||++-.+. ....+..++ .+| .+
T Consensus 337 ~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~-LlSRg~D~tLKvWDLrq~kk-pL~~~tgL~t~~~~td 414 (641)
T KOG0772|consen 337 LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNY-LLSRGFDDTLKVWDLRQFKK-PLNVRTGLPTPFPGTD 414 (641)
T ss_pred cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccch-hhhccCCCceeeeecccccc-chhhhcCCCccCCCCc
Confidence 37888888853221111 1122335678999999994 45667788999999873211 112222232 223 56
Q ss_pred eEECCCCCEEEEEecC--CccceeeeeeccccccEEeeccchhhh
Q 046018 202 VRSNSNGEFWVALHAK--KGLFGKLILLNSWLGKTLLKLPLSFRQ 244 (310)
Q Consensus 202 i~~d~~G~l~va~~~~--~~~~~~~i~~~~~~g~~~~~~~~~~~~ 244 (310)
.+|+|+-.|.++.... +..-.....++..+-+.+..+..+...
T Consensus 415 c~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aS 459 (641)
T KOG0772|consen 415 CCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTAS 459 (641)
T ss_pred cccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCce
Confidence 8999999887764332 211111122233344555666655433
No 149
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.29 E-value=0.019 Score=54.06 Aligned_cols=162 Identities=15% Similarity=0.173 Sum_probs=97.6
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
+-..|..+.| +.+..+....++ +..+..++........ + ...-..++.+.|.|. ||++.+
T Consensus 452 GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~---G-H~~PVwdV~F~P~Gy--YFatas------------ 512 (707)
T KOG0263|consen 452 GPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYK---G-HLAPVWDVQFAPRGY--YFATAS------------ 512 (707)
T ss_pred Cceeeeeecc-cccceeeccCCcceeeeecccceeEEEec---C-CCcceeeEEecCCce--EEEecC------------
Confidence 4455899999 777777777654 5555666554332222 1 111247888999985 555543
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN 205 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 205 (310)
.+.+.++|..|-. ...+++...+..-..+.|.|... ...+.+..+.|..||...+. .+++|..-.+....++++
T Consensus 513 --~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~--~VRiF~GH~~~V~al~~S 586 (707)
T KOG0263|consen 513 --HDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGN--SVRIFTGHKGPVTALAFS 586 (707)
T ss_pred --CCceeeeeecccC-CchhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCc--EEEEecCCCCceEEEEEc
Confidence 2245667766642 33444445556677899999876 34455677899999987442 245554433344789999
Q ss_pred CCCCEEEEEecCCccceeeeee-ccccccEEeec
Q 046018 206 SNGEFWVALHAKKGLFGKLILL-NSWLGKTLLKL 238 (310)
Q Consensus 206 ~~G~l~va~~~~~~~~~~~i~~-~~~~g~~~~~~ 238 (310)
++|+..++....+. |.. +-+.|..+..+
T Consensus 587 p~Gr~LaSg~ed~~-----I~iWDl~~~~~v~~l 615 (707)
T KOG0263|consen 587 PCGRYLASGDEDGL-----IKIWDLANGSLVKQL 615 (707)
T ss_pred CCCceEeecccCCc-----EEEEEcCCCcchhhh
Confidence 99966555544443 333 34555554443
No 150
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.28 E-value=0.011 Score=52.78 Aligned_cols=146 Identities=10% Similarity=0.129 Sum_probs=92.5
Q ss_pred eceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 49 PLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
...+.++. .|.=+.+...++ |-.+|.++|+...-... ..-|..+.+.|++..++++...
T Consensus 261 Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----~~~~~cvkf~pd~~n~fl~G~s-------------- 320 (503)
T KOG0282|consen 261 VRDASFNN-CGTSFLSASFDRFLKLWDTETGQVLSRFHL-----DKVPTCVKFHPDNQNIFLVGGS-------------- 320 (503)
T ss_pred hhhhhccc-cCCeeeeeecceeeeeeccccceEEEEEec-----CCCceeeecCCCCCcEEEEecC--------------
Confidence 34677877 776666656555 66679999986543332 2357888999988337777643
Q ss_pred CCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018 128 GDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS 206 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 206 (310)
+++|..||..++++.. ....+...+.|.|-++++ -+++.+....+.+|+.+....-........ -.=-.+...|
T Consensus 321 ---d~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~~~~~-hsmP~~~~~P 395 (503)
T KOG0282|consen 321 ---DKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIADPEM-HTMPCLTLHP 395 (503)
T ss_pred ---CCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhcchhh-ccCcceecCC
Confidence 7889999987776432 224466788999999988 567778888999888764321111111111 0112456667
Q ss_pred CCCEEEEEecCCc
Q 046018 207 NGEFWVALHAKKG 219 (310)
Q Consensus 207 ~G~l~va~~~~~~ 219 (310)
.|..+++..-.+.
T Consensus 396 ~~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 396 NGKWFAAQSMDNY 408 (503)
T ss_pred CCCeehhhccCce
Confidence 7766666554443
No 151
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.27 E-value=0.0075 Score=53.81 Aligned_cols=123 Identities=13% Similarity=0.137 Sum_probs=82.2
Q ss_pred cccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEE
Q 046018 29 SQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVI 107 (310)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l 107 (310)
+..++..+.....++...+....+.+++ +|+ +.+++....|+.+|.+++..+.+-.. ....+.+++.+|+++++
T Consensus 384 l~iyd~~~~e~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS----~~~lItdf~~~~nsr~i 458 (668)
T COG4946 384 LGIYDKDGGEVKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKS----EYGLITDFDWHPNSRWI 458 (668)
T ss_pred EEEEecCCceEEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEeccc----ccceeEEEEEcCCceeE
Confidence 4455666644344555667888999999 766 67776666799999999987644222 22357789999999833
Q ss_pred EEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEe
Q 046018 108 YFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAE 170 (310)
Q Consensus 108 ~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~ 170 (310)
-.+-. .+.....+..||.++++.-.+.+....--.-+|+||++.||+-+
T Consensus 459 AYafP--------------~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 459 AYAFP--------------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEecC--------------cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 22221 12234457788988877765555444445667999999999864
No 152
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.27 E-value=0.019 Score=51.28 Aligned_cols=162 Identities=17% Similarity=0.222 Sum_probs=88.3
Q ss_pred eEEEeCCCCcEEEEECCC-------------c-eEEEeCCCCeEEEEEeec-C-----CccccCCcceEEeCC-CCEEEE
Q 046018 51 GIRFDKKTGDLYIADAYL-------------G-FQVVGPEGGLATQLVTEA-A-----GQPLRFTNDLDIDEH-KGVIYF 109 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~~-------------g-i~~~d~~~~~~~~~~~~~-~-----~~~~~~~~~i~~d~~-g~~l~v 109 (310)
.|++++ +|+|||+.... | |.+++..+... .+.+ . ......|.+++++|. |. ||+
T Consensus 181 ~l~f~p-DG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~---~d~p~~~~~i~s~G~RN~qGl~w~P~tg~-Lw~ 255 (399)
T COG2133 181 RLVFGP-DGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIP---ADNPFPNSEIWSYGHRNPQGLAWHPVTGA-LWT 255 (399)
T ss_pred cEEECC-CCcEEEEeCCCCCcccccCccccccceeeeccCcccc---cCCCCCCcceEEeccCCccceeecCCCCc-EEE
Confidence 599999 88999987543 1 44443332110 0110 0 113446889999998 77 999
Q ss_pred EeCCCchhhh-hhhhhhhcCCCCceEEEE-e--CCC-----CeEE-E------EecCCcccceEEEecC-------CCeE
Q 046018 110 TDSSTSFQRR-QFMSSILSGDKTGRLLKY-E--KTT-----KEVT-I------LLQGLAFANGVALSRD-------RTFI 166 (310)
Q Consensus 110 ~~~~~~~~~~-~~~~~~~~~~~~g~v~~~-d--~~~-----~~~~-~------~~~~~~~~~gi~~~~d-------~~~l 166 (310)
++...++.+. ..+..+-.+..-|.-+.+ - .++ +... . .......|.||+|... ++ |
T Consensus 256 ~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~-l 334 (399)
T COG2133 256 TEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGD-L 334 (399)
T ss_pred EecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCc-E
Confidence 9866522211 011111111112222222 0 000 0010 0 0122345789999953 34 8
Q ss_pred EEEecCCceEEEEEccCCCCCccee-ee-eCCCCCCeeEECCCCCEEEEEecCC
Q 046018 167 LIAETSNCRILRFWLHGPNSGKQDV-FA-ELPGFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 167 yv~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~~~p~~i~~d~~G~l~va~~~~~ 218 (310)
+|+...+..+.+.++++...-..+. +. +..+.|.++++.+||.|++++..+.
T Consensus 335 fV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~ 388 (399)
T COG2133 335 FVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGD 388 (399)
T ss_pred EEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCCC
Confidence 9998877777777776541111111 21 2347899999999999999988754
No 153
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.27 E-value=0.028 Score=49.43 Aligned_cols=151 Identities=13% Similarity=-0.014 Sum_probs=83.2
Q ss_pred ccccceeceEEEeCCC-CcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018 43 EHICGRPLGIRFDKKT-GDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120 (310)
Q Consensus 43 ~~~~~~p~gl~~d~~~-g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~ 120 (310)
.....+..++.+.|.. +.-.++...+| +-.++.++.. .+.+. .+ -...+..+++.|+|+ +..+.+.
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~--~l~~l-~g-H~~RVs~VafHPsG~-~L~Tasf------- 281 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET--PLQDL-EG-HLARVSRVAFHPSGK-FLGTASF------- 281 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeeccCCCc--chhhh-hc-chhhheeeeecCCCc-eeeeccc-------
Confidence 3344567788899852 32233333345 4444444432 23222 11 124678899999999 6666543
Q ss_pred hhhhhhcCCCCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCC
Q 046018 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGF 198 (310)
Q Consensus 121 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~ 198 (310)
+.....||..++..-...++.. ...+|++.+||. |..+.....-=.+||+..+ ....+.. --..
T Consensus 282 ----------D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtg---r~im~L~gH~k~ 347 (459)
T KOG0272|consen 282 ----------DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTG---RCIMFLAGHIKE 347 (459)
T ss_pred ----------ccchhhcccccchhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccC---cEEEEecccccc
Confidence 3445567776654333333333 357899999998 6665443333344566532 2233322 1133
Q ss_pred CCeeEECCCCCEEEEEecCCc
Q 046018 199 PDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 199 p~~i~~d~~G~l~va~~~~~~ 219 (310)
..++.++|+|....+....+.
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred eeeEeECCCceEEeecCCCCc
Confidence 468999999976555544443
No 154
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.26 E-value=0.04 Score=45.19 Aligned_cols=159 Identities=10% Similarity=0.093 Sum_probs=96.1
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEE-eCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDI-DEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~-d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
+..+.|.+||++|.|+.+.....++.+|.+++++++..... ..+...++- ...++ ++-+.
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGH----tDYvH~vv~R~~~~q-ilsG~-------------- 175 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGH----TDYVHSVVGRNANGQ-ILSGA-------------- 175 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCC----cceeeeeeecccCcc-eeecC--------------
Confidence 45678999998999999874445999999999987665431 235666665 45666 55443
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCcccce---------EEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANG---------VALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP 196 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~g---------i~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 196 (310)
.+|.+..||.++++..........|+. .+++-+..+|. + -....+..|.+... +.......|
T Consensus 176 ----EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlv-C-GgGp~lslwhLrss---e~t~vfpip 246 (325)
T KOG0649|consen 176 ----EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLV-C-GGGPKLSLWHLRSS---ESTCVFPIP 246 (325)
T ss_pred ----CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEE-e-cCCCceeEEeccCC---CceEEEecc
Confidence 588999999988877666544444331 34444555333 3 23456666666532 223333344
Q ss_pred CCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccc
Q 046018 197 GFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240 (310)
Q Consensus 197 ~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~ 240 (310)
....-+.++.|- +.++. .+++ +..+...|.+...+|+
T Consensus 247 a~v~~v~F~~d~-vl~~G-~g~~-----v~~~~l~Gvl~a~ip~ 283 (325)
T KOG0649|consen 247 ARVHLVDFVDDC-VLIGG-EGNH-----VQSYTLNGVLQANIPV 283 (325)
T ss_pred cceeEeeeecce-EEEec-cccc-----eeeeeeccEEEEeccC
Confidence 444556666543 33333 3333 5666666666666554
No 155
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=97.25 E-value=0.082 Score=45.77 Aligned_cols=113 Identities=9% Similarity=0.105 Sum_probs=75.6
Q ss_pred ceeceEEEeCCCCcEEEEECC-Cc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY-LG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~-~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
+=...++++| .++ |+++.. ++ |-.+|..++++...... -....+++++++..-++|.+.
T Consensus 152 gWVr~vavdP-~n~-wf~tgs~DrtikIwDlatg~LkltltG----hi~~vr~vavS~rHpYlFs~g------------- 212 (460)
T KOG0285|consen 152 GWVRSVAVDP-GNE-WFATGSADRTIKIWDLATGQLKLTLTG----HIETVRGVAVSKRHPYLFSAG------------- 212 (460)
T ss_pred ceEEEEeeCC-Cce-eEEecCCCceeEEEEcccCeEEEeecc----hhheeeeeeecccCceEEEec-------------
Confidence 3345789998 544 555544 55 66679999987543321 234678999999888555544
Q ss_pred hhcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
.++.|-.||++..++.. ...-+....++.+.|--+ ++++...+..+.+||+.+.
T Consensus 213 -----edk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr 267 (460)
T KOG0285|consen 213 -----EDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTR 267 (460)
T ss_pred -----CCCeeEEEechhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeeccc
Confidence 26678999997655443 223355567888888666 6666667778899998753
No 156
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.22 E-value=0.035 Score=53.36 Aligned_cols=145 Identities=10% Similarity=0.141 Sum_probs=84.7
Q ss_pred ceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018 50 LGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG 128 (310)
Q Consensus 50 ~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~ 128 (310)
.-++++. +|+..++... ..|-.++..+...........+ ..-+|.++|+++ +.+..+
T Consensus 100 r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a----pVl~l~~~p~~~-fLAvss---------------- 157 (933)
T KOG1274|consen 100 RDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA----PVLQLSYDPKGN-FLAVSS---------------- 157 (933)
T ss_pred eEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCC----ceeeeeEcCCCC-EEEEEe----------------
Confidence 3677887 7776555444 3566666655443333222111 245788999999 655553
Q ss_pred CCCceEEEEeCCCCeEEEEecCCc----c-----cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC-CCC
Q 046018 129 DKTGRLLKYEKTTKEVTILLQGLA----F-----ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL-PGF 198 (310)
Q Consensus 129 ~~~g~v~~~d~~~~~~~~~~~~~~----~-----~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~ 198 (310)
.+|.|+.|+.+++.......+.. . -.-++|.|++..+.+. ...+.|.+|+.++-.. ......+. ...
T Consensus 158 -~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~-~~d~~Vkvy~r~~we~-~f~Lr~~~~ss~ 234 (933)
T KOG1274|consen 158 -CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP-PVDNTVKVYSRKGWEL-QFKLRDKLSSSK 234 (933)
T ss_pred -cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee-ccCCeEEEEccCCcee-heeecccccccc
Confidence 38999999998876554332221 1 2457999997766665 4568999998875211 01111111 111
Q ss_pred CCeeEECCCCCEEEEEecCCc
Q 046018 199 PDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 199 p~~i~~d~~G~l~va~~~~~~ 219 (310)
-.-+.++|.|....|..-.++
T Consensus 235 ~~~~~wsPnG~YiAAs~~~g~ 255 (933)
T KOG1274|consen 235 FSDLQWSPNGKYIAASTLDGQ 255 (933)
T ss_pred eEEEEEcCCCcEEeeeccCCc
Confidence 245778898865555444444
No 157
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.20 E-value=0.066 Score=47.92 Aligned_cols=175 Identities=12% Similarity=0.142 Sum_probs=99.8
Q ss_pred eeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 48 RPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
...++.+-. +|+|+.+....| |..||.++.. +.....+ ...-.+-+.+.|+++.++++.+.
T Consensus 70 ~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~---iLR~~~a-h~apv~~~~f~~~d~t~l~s~sD------------- 131 (487)
T KOG0310|consen 70 VVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRV---ILRQLYA-HQAPVHVTKFSPQDNTMLVSGSD------------- 131 (487)
T ss_pred ceeEEEeec-CCeEEEccCCcCcEEEeccccHH---HHHHHhh-ccCceeEEEecccCCeEEEecCC-------------
Confidence 344666766 889988877766 6777855421 1111111 11124556677777746655432
Q ss_pred cCCCCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCC-CeeE
Q 046018 127 SGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFP-DNVR 203 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p-~~i~ 203 (310)
+..+..||.+++..+.-..+. ......+++|-..+++++.+..+.|..||..... ....+ .-+.| ..+.
T Consensus 132 ----d~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~----~~v~elnhg~pVe~vl 203 (487)
T KOG0310|consen 132 ----DKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT----SRVVELNHGCPVESVL 203 (487)
T ss_pred ----CceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC----ceeEEecCCCceeeEE
Confidence 445666777765543222221 2246778888888899999999999999977431 12222 22334 6777
Q ss_pred ECCCCCEEEEEecCCccceeeeeecc--ccccEEeeccchhhhhcccccCCCC
Q 046018 204 SNSNGEFWVALHAKKGLFGKLILLNS--WLGKTLLKLPLSFRQLHSLLVGGKP 254 (310)
Q Consensus 204 ~d~~G~l~va~~~~~~~~~~~i~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~ 254 (310)
+=+.|.+.++..++. +..++ ..++.+..........+|+.+...+
T Consensus 204 ~lpsgs~iasAgGn~------vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~ 250 (487)
T KOG0310|consen 204 ALPSGSLIASAGGNS------VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDS 250 (487)
T ss_pred EcCCCCEEEEcCCCe------EEEEEecCCceehhhhhcccceEEEEEeecCC
Confidence 778888877665554 33333 2344443333233445566555544
No 158
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.19 E-value=0.091 Score=46.55 Aligned_cols=100 Identities=12% Similarity=0.110 Sum_probs=63.4
Q ss_pred CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC---CcccceEEEecCCCeEEEEec
Q 046018 95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG---LAFANGVALSRDRTFILIAET 171 (310)
Q Consensus 95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~~~gi~~~~d~~~lyv~~~ 171 (310)
.+++...|.|.++..++ .++.....|..++..-..... ...-...++.|||- ++.+.+
T Consensus 306 V~~ls~h~tgeYllsAs------------------~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt 366 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSAS------------------NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGT 366 (506)
T ss_pred ceeeeeccCCcEEEEec------------------CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccC
Confidence 57788899999555444 256666667666654433222 12246788999996 888888
Q ss_pred CCceEEEEEccCCCCCcceeeeeCC---CCCCeeEECCCCCEEEEEecCC
Q 046018 172 SNCRILRFWLHGPNSGKQDVFAELP---GFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 172 ~~~~i~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~l~va~~~~~ 218 (310)
.++.|-+||...+. ..+.+| +....|.|..+|...+...+..
T Consensus 367 ~d~~vkiwdlks~~-----~~a~Fpght~~vk~i~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 367 PDGVVKIWDLKSQT-----NVAKFPGHTGPVKAISFSENGYWLATAADDG 411 (506)
T ss_pred CCceEEEEEcCCcc-----ccccCCCCCCceeEEEeccCceEEEEEecCC
Confidence 88999999987431 223333 2336789998884433333444
No 159
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.13 E-value=0.065 Score=50.89 Aligned_cols=176 Identities=10% Similarity=0.057 Sum_probs=108.9
Q ss_pred CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeE
Q 046018 2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLA 80 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~ 80 (310)
|+++.+|..|+.|.++.+. | -.........+-+++.|.+.+-|+...-++ +..++....++
T Consensus 383 LLSSSMDKTVRLWh~~~~~-------------C-----L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~V 444 (712)
T KOG0283|consen 383 LLSSSMDKTVRLWHPGRKE-------------C-----LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKV 444 (712)
T ss_pred eEeccccccEEeecCCCcc-------------e-----eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCee
Confidence 6788899999999987752 0 001111234557889997888777766654 77777776665
Q ss_pred EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe----c-C----C
Q 046018 81 TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL----Q-G----L 151 (310)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~----~-~----~ 151 (310)
....+. . ..+..+++.|||+...|++ -+|....|+..+-+++.-. . . .
T Consensus 445 v~W~Dl-~----~lITAvcy~PdGk~avIGt------------------~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 445 VDWNDL-R----DLITAVCYSPDGKGAVIGT------------------FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred Eeehhh-h----hhheeEEeccCCceEEEEE------------------eccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 433222 1 2578899999999777776 2777888887765554311 1 1 1
Q ss_pred cccceEEEecC-CCeEEEEecCCceEEEEEccCCCCC-cceeeeeCCCCCCeeEECCCCCEEEEEecCCcc
Q 046018 152 AFANGVALSRD-RTFILIAETSNCRILRFWLHGPNSG-KQDVFAELPGFPDNVRSNSNGEFWVALHAKKGL 220 (310)
Q Consensus 152 ~~~~gi~~~~d-~~~lyv~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~ 220 (310)
...-|+.+.|. -..|+|+ +...+|.+||.....+- +..-+.+. .......+..||.-.|.......+
T Consensus 502 ~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~~~lv~KfKG~~n~-~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRDKDLVHKFKGFRNT-SSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred ceeeeeEecCCCCCeEEEe-cCCCceEEEeccchhhhhhhcccccC-CcceeeeEccCCCEEEEeecCceE
Confidence 23568888763 3347877 67789999997432111 11111111 123445677788877777766653
No 160
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.12 E-value=0.013 Score=51.31 Aligned_cols=113 Identities=11% Similarity=0.093 Sum_probs=76.0
Q ss_pred ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
..+...++-| +|.=+|+... ..++.+|.++...... .+.......++++.+||++++....
T Consensus 313 ~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn~~~~W----~gvr~~~v~dlait~Dgk~vl~v~~------------- 374 (519)
T KOG0293|consen 313 FSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGNILGNW----EGVRDPKVHDLAITYDGKYVLLVTV------------- 374 (519)
T ss_pred CCcceeEEcc-CCceeEecCCCCcEEEecCCcchhhcc----cccccceeEEEEEcCCCcEEEEEec-------------
Confidence 4566788888 7766666666 4599999987653222 2333346889999999997776652
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
+..+..|+.++..-..+.........+.++.|++ +..++-..+.|..||...
T Consensus 375 -----d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k-~~LvnL~~qei~LWDl~e 426 (519)
T KOG0293|consen 375 -----DKKIRLYNREARVDRGLISEEQPITSFSISKDGK-LALVNLQDQEIHLWDLEE 426 (519)
T ss_pred -----ccceeeechhhhhhhccccccCceeEEEEcCCCc-EEEEEcccCeeEEeecch
Confidence 4557777766432222333444557789999998 444556778999999873
No 161
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.052 Score=45.68 Aligned_cols=142 Identities=17% Similarity=0.201 Sum_probs=78.2
Q ss_pred EEEEeCCCCeEEEEecCCc----ccceEEEecCCCeEEEEecC----CceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018 134 LLKYEKTTKEVTILLQGLA----FANGVALSRDRTFILIAETS----NCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN 205 (310)
Q Consensus 134 v~~~d~~~~~~~~~~~~~~----~~~gi~~~~d~~~lyv~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 205 (310)
.+.+|+.+++.-....... ..+| ++++||+.||.++.. .+-|-+||.+.+ ......+....-.|..+.+-
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHG-vfs~dG~~LYATEndfd~~rGViGvYd~r~~-fqrvgE~~t~GiGpHev~lm 170 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHG-VFSPDGRLLYATENDFDPNRGVIGVYDAREG-FQRVGEFSTHGIGPHEVTLM 170 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeeccc-ccCCCCcEEEeecCCCCCCCceEEEEecccc-cceecccccCCcCcceeEEe
Confidence 5677877654332221111 1334 489999999998753 467888887632 11122222222358899999
Q ss_pred CCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEEC-CCCCEEEEEEcCCCCeecce-e
Q 046018 206 SNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLS-EKGEVLEVLEDCEGKTLSFI-S 283 (310)
Q Consensus 206 ~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~g~~~~~~~~~~g~~~~~~-~ 283 (310)
+||++.+..+.+ |...+..|.....+.. + ...++-+| .+|++++.-..+.......+ +
T Consensus 171 ~DGrtlvvanGG-------IethpdfgR~~lNlds---M----------ePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 171 ADGRTLVVANGG-------IETHPDFGRTELNLDS---M----------EPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cCCcEEEEeCCc-------eecccccCccccchhh---c----------CccEEEEeccccchhhhccCchhhhhcceee
Confidence 999988877654 2333322322211110 0 12456667 67888776555433211112 2
Q ss_pred EEEEeCCEEEEecC
Q 046018 284 EVEEKDGQLWMGSV 297 (310)
Q Consensus 284 ~~~~~~g~l~vgs~ 297 (310)
.....+|++|+|+-
T Consensus 231 ld~g~dgtvwfgcQ 244 (366)
T COG3490 231 LDIGRDGTVWFGCQ 244 (366)
T ss_pred eeeCCCCcEEEEEE
Confidence 33345789999885
No 162
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.14 Score=43.70 Aligned_cols=132 Identities=7% Similarity=0.002 Sum_probs=72.3
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEE--EEEeecCCccccCCcceEEeCCCCEEEEEeCCC---------
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLAT--QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSST--------- 114 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~--~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~--------- 114 (310)
....+|+++. +|+-+++-..++ |..++.++-..+ +... ...+...|..+++.||.+.+.|.-...
T Consensus 87 ~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R--~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 87 KEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIR--QNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred CceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhh--ccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 4577999998 887666666655 555565542111 0111 123344688888888877554443211
Q ss_pred ------------chhh--h--hhh------------hhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeE
Q 046018 115 ------------SFQR--R--QFM------------SSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFI 166 (310)
Q Consensus 115 ------------~~~~--~--~~~------------~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~l 166 (310)
.|.. . ... -.+.....+..|+.|+..+.-+..+......-..-+++|+|+++
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFi 243 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFI 243 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEE
Confidence 0100 0 000 00111223345777777744344444444445677899999976
Q ss_pred EEEecCCceEEEEEcc
Q 046018 167 LIAETSNCRILRFWLH 182 (310)
Q Consensus 167 yv~~~~~~~i~~~~~~ 182 (310)
.++ ..+.-|.+|.+-
T Consensus 244 a~~-gFTpDVkVwE~~ 258 (420)
T KOG2096|consen 244 AVS-GFTPDVKVWEPI 258 (420)
T ss_pred EEe-cCCCCceEEEEE
Confidence 665 566778888764
No 163
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.10 E-value=0.16 Score=44.05 Aligned_cols=161 Identities=12% Similarity=0.070 Sum_probs=97.0
Q ss_pred eeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 48 RPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
..-.++++| +.+|.++.... .-+.++..++.. +... .+ -...+..+.++.+|. +.+|..
T Consensus 66 svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~--~~el-tg-HKDSVt~~~Fshdgt-lLATGd-------------- 125 (399)
T KOG0296|consen 66 SVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEF--AGEL-TG-HKDSVTCCSFSHDGT-LLATGD-------------- 125 (399)
T ss_pred ceEEEEeCC-CCceEEecCCCceEEEEEccCCcc--eeEe-cC-CCCceEEEEEccCce-EEEecC--------------
Confidence 344688888 66655554443 356667777763 2222 11 112567788999998 665542
Q ss_pred cCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC-CeeEE
Q 046018 127 SGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP-DNVRS 204 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~i~~ 204 (310)
-+|.|..|..+++..+.... ......=+.+.|-.. ++.+.+..+.||.|.+..+ +..+.+.. ...| ..-.+
T Consensus 126 ---msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~--~~~kv~~G-h~~~ct~G~f 198 (399)
T KOG0296|consen 126 ---MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQ--ALCKVMSG-HNSPCTCGEF 198 (399)
T ss_pred ---CCccEEEEEcccCceEEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCc--ceeeEecC-CCCCcccccc
Confidence 37889999988876665332 233334466777665 5666688899999987643 22223322 1112 23356
Q ss_pred CCCCCEEEEEecCCccceeeeeeccccccEEeecc
Q 046018 205 NSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLP 239 (310)
Q Consensus 205 d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~ 239 (310)
-|+|...+..+..+.+ +...+++++.+..+.
T Consensus 199 ~pdGKr~~tgy~dgti----~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 199 IPDGKRILTGYDDGTI----IVWNPKTGQPLHKIT 229 (399)
T ss_pred cCCCceEEEEecCceE----EEEecCCCceeEEec
Confidence 6788666666666653 455667888877775
No 164
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.08 E-value=0.17 Score=44.09 Aligned_cols=225 Identities=15% Similarity=0.209 Sum_probs=106.0
Q ss_pred eEEEeCCCCcEEEEECC-----Cc-----eEEEeCCCCeEEEEEeecCC---ccccCCcceEEeCCCCEEEEEeCCCchh
Q 046018 51 GIRFDKKTGDLYIADAY-----LG-----FQVVGPEGGLATQLVTEAAG---QPLRFTNDLDIDEHKGVIYFTDSSTSFQ 117 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~-----~g-----i~~~d~~~~~~~~~~~~~~~---~~~~~~~~i~~d~~g~~l~v~~~~~~~~ 117 (310)
.++++++...+|+++.. +| |..+|..+-..+.-+..+.. ....+++.++++.||+++||.+....-.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 47788866678988753 22 67789988765443333322 1235788999999999999987432100
Q ss_pred -------hhhhhh----------------hhhcCCCCceEEEEeCC-CCeEEEEecCCcc----c--ceEEEecCCCeEE
Q 046018 118 -------RRQFMS----------------SILSGDKTGRLLKYEKT-TKEVTILLQGLAF----A--NGVALSRDRTFIL 167 (310)
Q Consensus 118 -------~~~~~~----------------~~~~~~~~g~v~~~d~~-~~~~~~~~~~~~~----~--~gi~~~~d~~~ly 167 (310)
..+... .+..-=.+|.+..+..+ .|+........-. | +.-++..++.++|
T Consensus 120 VtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~ 199 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLY 199 (342)
T ss_dssp EEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEE
T ss_pred EEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEE
Confidence 000000 00000134444443332 2222211111111 1 2223444455566
Q ss_pred EEecCCceEEEEEccCCCCCcceeeeeC------CC-CCCe---eEEC-CCCCEEEEEecCCc----cceeeee-ecccc
Q 046018 168 IAETSNCRILRFWLHGPNSGKQDVFAEL------PG-FPDN---VRSN-SNGEFWVALHAKKG----LFGKLIL-LNSWL 231 (310)
Q Consensus 168 v~~~~~~~i~~~~~~~~~~~~~~~~~~~------~~-~p~~---i~~d-~~G~l~va~~~~~~----~~~~~i~-~~~~~ 231 (310)
+. +.++.|+..+..+........+.-. .+ .|.| ++++ +.|+|||.-+.+.. --.+-|. .+..+
T Consensus 200 F~-Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t 278 (342)
T PF06433_consen 200 FV-SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT 278 (342)
T ss_dssp EE-BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT
T ss_pred EE-ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC
Confidence 65 6788888888876432111111101 11 1322 6665 46688887654321 1111133 34466
Q ss_pred ccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEEcCCCC
Q 046018 232 GKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLEDCEGK 277 (310)
Q Consensus 232 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~g~ 277 (310)
++.+.+++++.+ +.++.+...+..+++.++.....+.++....|+
T Consensus 279 ~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 279 HKRVARIPLEHP-IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp TEEEEEEEEEEE-ESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred CeEEEEEeCCCc-cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 777777766432 234555555566666665544455555444444
No 165
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.08 E-value=0.055 Score=47.67 Aligned_cols=131 Identities=20% Similarity=0.210 Sum_probs=77.9
Q ss_pred eeceEEEeCCCCcEEEEECCC-------ceEEEeCCCCeEEEEEe-e-c-------CCc-cccCCcceEEeCCCCEEEEE
Q 046018 48 RPLGIRFDKKTGDLYIADAYL-------GFQVVGPEGGLATQLVT-E-A-------AGQ-PLRFTNDLDIDEHKGVIYFT 110 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~-------gi~~~d~~~~~~~~~~~-~-~-------~~~-~~~~~~~i~~d~~g~~l~v~ 110 (310)
-+.||++.+ +|.+||++... .|++++.++.....+.. . . ... ......+|+++++|++||++
T Consensus 86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 566999966 99999999875 39999988544333311 1 1 111 22356799999999989988
Q ss_pred eCCCchhhhhhhhhhhcCCCCceEEEEeCCCCe--EEEE---ec------CCcccceEEEecCCCeEEEEecC-------
Q 046018 111 DSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE--VTIL---LQ------GLAFANGVALSRDRTFILIAETS------- 172 (310)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~--~~~~---~~------~~~~~~gi~~~~d~~~lyv~~~~------- 172 (310)
.....++..... .......-+++.||+.+.. ...+ .. ....+..++.-+|++ ++|.+..
T Consensus 165 ~E~~l~~d~~~~--~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~~~~~~~~ 241 (326)
T PF13449_consen 165 MESPLKQDGPRA--NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERDFSPGTGN 241 (326)
T ss_pred ECccccCCCccc--ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEccCCCCccc
Confidence 765432211000 0000112468889987521 1111 12 234456788888888 7776654
Q ss_pred CceEEEEEcc
Q 046018 173 NCRILRFWLH 182 (310)
Q Consensus 173 ~~~i~~~~~~ 182 (310)
..+|+.+++.
T Consensus 242 ~~ri~~v~l~ 251 (326)
T PF13449_consen 242 YKRIYRVDLS 251 (326)
T ss_pred eEEEEEEEcc
Confidence 3577777765
No 166
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.06 E-value=0.19 Score=48.68 Aligned_cols=117 Identities=10% Similarity=0.144 Sum_probs=78.2
Q ss_pred ccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018 43 EHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF 121 (310)
Q Consensus 43 ~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~ 121 (310)
....+...|+++++ .+-|||....+ .|-+++-++.+.. ... ..-..+++.+.++++= =|+-+.+
T Consensus 48 deHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrcl--ftL--~GHlDYVRt~~FHhey--PWIlSAS-------- 112 (1202)
T KOG0292|consen 48 DEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCL--FTL--LGHLDYVRTVFFHHEY--PWILSAS-------- 112 (1202)
T ss_pred hccCCccceeeecC-CCCeEEecCCccEEEEEecccceeh--hhh--ccccceeEEeeccCCC--ceEEEcc--------
Confidence 44556777999999 88899986654 3666777665542 111 1123467777777774 4555433
Q ss_pred hhhhhcCCCCceEEEEeCCCCeEEEEecCCcc-cceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 122 MSSILSGDKTGRLLKYEKTTKEVTILLQGLAF-ANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~-~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
.+.+|..||-+++......++... .-.-.|.|-.. ++|+.+-..+|.+||..|
T Consensus 113 --------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 113 --------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISG 166 (1202)
T ss_pred --------CCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeecc
Confidence 266788899888776655544322 33455777555 888889999999999976
No 167
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.056 Score=45.97 Aligned_cols=191 Identities=10% Similarity=0.064 Sum_probs=101.7
Q ss_pred eceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 49 PLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
..-+.+++ -|.+.+..-. +.|..+|..+...-++... -..-+.+++.+++|+ ..++.+.
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsa----H~~pi~sl~WS~dgr-~LltsS~-------------- 85 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSA----HVRPITSLCWSRDGR-KLLTSSR-------------- 85 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhc----cccceeEEEecCCCC-EeeeecC--------------
Confidence 44567777 7765555444 4588888887653222211 122356899999999 7777754
Q ss_pred CCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CC----CCCCee
Q 046018 128 GDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LP----GFPDNV 202 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~----~~p~~i 202 (310)
+..+..||...|....-..-....-+..+.|..+...++......-++++...+ ....+.. .+ ..++..
T Consensus 86 ---D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~---~h~~Lp~d~d~dln~sas~~ 159 (405)
T KOG1273|consen 86 ---DWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP---KHSVLPKDDDGDLNSSASHG 159 (405)
T ss_pred ---CceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC---ceeeccCCCccccccccccc
Confidence 566888988777543211111223466777765556665555555555555432 1122221 11 234555
Q ss_pred EECCCCCEEEEEecCCccceeeeeeccc-cccEEeeccchh-hhhcccccCCCCceEEEEECCCCCEEEEEE
Q 046018 203 RSNSNGEFWVALHAKKGLFGKLILLNSW-LGKTLLKLPLSF-RQLHSLLVGGKPHATAIKLSEKGEVLEVLE 272 (310)
Q Consensus 203 ~~d~~G~l~va~~~~~~~~~~~i~~~~~-~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 272 (310)
.+|+.|++.++....+. +..+++ +-+.+..+.... ...-.+.+.... ..+.++...++++.|.
T Consensus 160 ~fdr~g~yIitGtsKGk-----llv~~a~t~e~vas~rits~~~IK~I~~s~~g--~~liiNtsDRvIR~ye 224 (405)
T KOG1273|consen 160 VFDRRGKYIITGTSKGK-----LLVYDAETLECVASFRITSVQAIKQIIVSRKG--RFLIINTSDRVIRTYE 224 (405)
T ss_pred cccCCCCEEEEecCcce-----EEEEecchheeeeeeeechheeeeEEEEeccC--cEEEEecCCceEEEEe
Confidence 78999976655555454 455543 334443332221 111122222222 2345566667777774
No 168
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.02 E-value=0.14 Score=48.92 Aligned_cols=186 Identities=12% Similarity=0.110 Sum_probs=111.2
Q ss_pred ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
.....++++. =|+ .+++...+-|-++|..+|..+.-....+ .......++++|.-++ +.++...
T Consensus 449 ~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~-ah~~~V~gla~D~~n~-~~vsa~~------------ 513 (910)
T KOG1539|consen 449 INATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP-AHKGEVTGLAVDGTNR-LLVSAGA------------ 513 (910)
T ss_pred cceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCc-cccCceeEEEecCCCc-eEEEccC------------
Confidence 4555777777 444 5555444459999999886543221100 1122468999999998 8887643
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN 205 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 205 (310)
.|-+..||..++....-..-...+.+|....... +++.....=.|.++|..+.+. .+.+....+....++++
T Consensus 514 -----~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kv--vR~f~gh~nritd~~FS 585 (910)
T KOG1539|consen 514 -----DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKV--VREFWGHGNRITDMTFS 585 (910)
T ss_pred -----cceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhh--hHHhhccccceeeeEeC
Confidence 7778888887554333223344567777777665 555545666888888653211 11222222345789999
Q ss_pred CCCCEEEEEecCCccceeeeee-ccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEE
Q 046018 206 SNGEFWVALHAKKGLFGKLILL-NSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLE 272 (310)
Q Consensus 206 ~~G~l~va~~~~~~~~~~~i~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 272 (310)
+||+..++..-... |.. +-+++.++..+.++.++ .-++++|+|.++.+..
T Consensus 586 ~DgrWlisasmD~t-----Ir~wDlpt~~lID~~~vd~~~------------~sls~SPngD~LAT~H 636 (910)
T KOG1539|consen 586 PDGRWLISASMDST-----IRTWDLPTGTLIDGLLVDSPC------------TSLSFSPNGDFLATVH 636 (910)
T ss_pred CCCcEEEEeecCCc-----EEEEeccCcceeeeEecCCcc------------eeeEECCCCCEEEEEE
Confidence 99975554443333 444 44788888776554322 2356677776665543
No 169
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.18 Score=45.03 Aligned_cols=141 Identities=12% Similarity=0.121 Sum_probs=84.0
Q ss_pred eceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 49 PLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
.+.|+.++ .|...++... ..||.+...+|.+-.+... -...+..+.++.||. .+|+.+.
T Consensus 84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~a----HYQ~ITcL~fs~dgs-~iiTgsk-------------- 143 (476)
T KOG0646|consen 84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSA----HYQSITCLKFSDDGS-HIITGSK-------------- 143 (476)
T ss_pred eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHh----hccceeEEEEeCCCc-EEEecCC--------------
Confidence 45788888 8876666644 4599999998876433221 223467888999998 7777643
Q ss_pred CCCCceEEEEeCCC-------CeEEEE--ecCC-cccceEEEecC--CCeEEEEecCCceEEEEEccCCCCCcceeeee-
Q 046018 128 GDKTGRLLKYEKTT-------KEVTIL--LQGL-AFANGVALSRD--RTFILIAETSNCRILRFWLHGPNSGKQDVFAE- 194 (310)
Q Consensus 128 ~~~~g~v~~~d~~~-------~~~~~~--~~~~-~~~~gi~~~~d--~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~- 194 (310)
+|.|..|...+ .....+ .... .....+.+.+. ..+||-+ +.++++.+||...+ .++..
T Consensus 144 ---Dg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k~wdlS~g-----~LLlti 214 (476)
T KOG0646|consen 144 ---DGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIKLWDLSLG-----VLLLTI 214 (476)
T ss_pred ---CccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe-cCCceEEEEEeccc-----eeeEEE
Confidence 77788775421 000000 0010 11123333332 2235654 66788899988754 22332
Q ss_pred -CCCCCCeeEECCCC-CEEEEEecCC
Q 046018 195 -LPGFPDNVRSNSNG-EFWVALHAKK 218 (310)
Q Consensus 195 -~~~~p~~i~~d~~G-~l~va~~~~~ 218 (310)
+|..+..+++||-+ .+|+++..+.
T Consensus 215 ~fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 215 TFPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred ecCCcceeEEEcccccEEEecCCcce
Confidence 56677899999988 5777766544
No 170
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.99 E-value=0.019 Score=51.01 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=88.7
Q ss_pred cccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 44 HICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 44 ~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
...+...+++++.+...||++...+.|+.+|.+.....+.... .....-..+|.+.+|. ++.+.+
T Consensus 342 KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D---~G~v~gts~~~S~ng~-ylA~GS----------- 406 (514)
T KOG2055|consen 342 KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD---DGSVHGTSLCISLNGS-YLATGS----------- 406 (514)
T ss_pred eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee---cCccceeeeeecCCCc-eEEecc-----------
Confidence 3457788999998454677775556699999988765443322 1223566789999998 444433
Q ss_pred hhhcCCCCceEEEEeCCCCeEE----EEe---cCCcccceEEEecCCCeEEEEecCCc-eEEEEEccCCCCCcceeeeeC
Q 046018 124 SILSGDKTGRLLKYEKTTKEVT----ILL---QGLAFANGVALSRDRTFILIAETSNC-RILRFWLHGPNSGKQDVFAEL 195 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~~----~~~---~~~~~~~gi~~~~d~~~lyv~~~~~~-~i~~~~~~~~~~~~~~~~~~~ 195 (310)
..|-|-.||.++-... ++. +-....+.|.|++|...|-+++.... .+...-. ....+|.+.
T Consensus 407 ------~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHv-----PS~TVFsNf 475 (514)
T KOG2055|consen 407 ------DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHV-----PSCTVFSNF 475 (514)
T ss_pred ------CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEec-----cceeeeccC
Confidence 3777777875432111 111 11123568999999997777655433 3333322 123445443
Q ss_pred C------CCCCeeEECCCCCEEEEEecCC
Q 046018 196 P------GFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 196 ~------~~p~~i~~d~~G~l~va~~~~~ 218 (310)
| +.+..|+++|.|-+....+..+
T Consensus 476 P~~n~~vg~vtc~aFSP~sG~lAvGNe~g 504 (514)
T KOG2055|consen 476 PTSNTKVGHVTCMAFSPNSGYLAVGNEAG 504 (514)
T ss_pred CCCCCcccceEEEEecCCCceEEeecCCC
Confidence 3 4668899999665444444444
No 171
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=96.95 E-value=0.033 Score=47.73 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=61.6
Q ss_pred eeceEEEeCCCCcEEEEECC-------------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCC
Q 046018 48 RPLGIRFDKKTGDLYIADAY-------------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSST 114 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~-------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~ 114 (310)
+.+|||+.. ..--||+... .|=..+|..++++ ++. .+..|.+-... +|+ ||+.++.
T Consensus 153 HLNGlA~~~-g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s~ev--l~~-----GLsmPhSPRWh-dgr-Lwvldsg- 221 (335)
T TIGR03032 153 HLNGMALDD-GEPRYVTALSQSDVADGWREGRRDGGCVIDIPSGEV--VAS-----GLSMPHSPRWY-QGK-LWLLNSG- 221 (335)
T ss_pred eecceeeeC-CeEEEEEEeeccCCcccccccccCCeEEEEeCCCCE--EEc-----CccCCcCCcEe-CCe-EEEEECC-
Confidence 566999865 3334655432 1222245554432 221 12234433333 577 9999976
Q ss_pred chhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEe
Q 046018 115 SFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAE 170 (310)
Q Consensus 115 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~ 170 (310)
.|.+.++|+++|+.+++..-...|.|+++. |+.++|+-
T Consensus 222 ----------------tGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 222 ----------------RGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred ----------------CCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEe
Confidence 889999999989999988888899999998 77666653
No 172
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=96.93 E-value=0.033 Score=47.22 Aligned_cols=102 Identities=18% Similarity=0.293 Sum_probs=72.0
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE---EecCCcccceEEEecCCCeEEEEe
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI---LLQGLAFANGVALSRDRTFILIAE 170 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---~~~~~~~~~gi~~~~d~~~lyv~~ 170 (310)
.++++.+.|... |.++.+. ++.|-.||......+. +.........|.+.|.|.+|.+.
T Consensus 174 evn~l~FHPre~-ILiS~sr-----------------D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg- 234 (430)
T KOG0640|consen 174 EVNDLDFHPRET-ILISGSR-----------------DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG- 234 (430)
T ss_pred cccceeecchhh-eEEeccC-----------------CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe-
Confidence 478899999998 9988754 7788888865333322 22233345689999999988876
Q ss_pred cCCceEEEEEccCCCCCcceeeee-CC-----CCCCeeEECCCCCEEEEEecCCc
Q 046018 171 TSNCRILRFWLHGPNSGKQDVFAE-LP-----GFPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 171 ~~~~~i~~~~~~~~~~~~~~~~~~-~~-----~~p~~i~~d~~G~l~va~~~~~~ 219 (310)
+.+..+..||.++ .+.+.. .| +....+..++.|+|||.....+.
T Consensus 235 TdHp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~ 284 (430)
T KOG0640|consen 235 TDHPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA 284 (430)
T ss_pred cCCCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEeccCCc
Confidence 7889999999763 344433 22 22345778999999999887775
No 173
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=96.89 E-value=0.022 Score=49.88 Aligned_cols=107 Identities=10% Similarity=0.020 Sum_probs=71.6
Q ss_pred cceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
.+....+.+..+.-+|.......-+-.+|.++..+.+.+....-.-.+.-+.++++|++. ...+.+
T Consensus 341 gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS------------- 406 (459)
T KOG0288|consen 341 GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGS------------- 406 (459)
T ss_pred CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCc-eeeecc-------------
Confidence 356677777773335666644455888899988876655432211223467789999998 444432
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCc---ccceEEEecCCCeEEEEe
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLA---FANGVALSRDRTFILIAE 170 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~---~~~gi~~~~d~~~lyv~~ 170 (310)
.+|.|+.|+..+++++....... ....++|+|-|..|.-++
T Consensus 407 ----~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad 450 (459)
T KOG0288|consen 407 ----ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD 450 (459)
T ss_pred ----CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence 38899999999999987553322 346788999888777664
No 174
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.88 E-value=0.0025 Score=33.81 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=21.1
Q ss_pred ceeceEEEeCCCCcEEEEECC-CceEEE
Q 046018 47 GRPLGIRFDKKTGDLYIADAY-LGFQVV 73 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~ 73 (310)
..|+||++++ +|+|||++.. +.|.++
T Consensus 2 ~~P~gvav~~-~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDS-DGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEET-TSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeC-CCCEEEEECCCCEEEEC
Confidence 4799999997 9999999987 346543
No 175
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.87 E-value=0.34 Score=44.08 Aligned_cols=153 Identities=9% Similarity=0.068 Sum_probs=84.9
Q ss_pred eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeec------CCc--cccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018 48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEA------AGQ--PLRFTNDLDIDEHKGVIYFTDSSTSFQRR 119 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~------~~~--~~~~~~~i~~d~~g~~l~v~~~~~~~~~~ 119 (310)
....+.+++-.+.|.++......-.+|.++..+..+.... ... -....++.+..|+.+-.+++.+
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s------- 288 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS------- 288 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec-------
Confidence 4457888873334555544444666788876544333221 011 1122344445555443444443
Q ss_pred hhhhhhhcCCCCceEEEEeCCCC--eEEEEecCCc-----ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceee
Q 046018 120 QFMSSILSGDKTGRLLKYEKTTK--EVTILLQGLA-----FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVF 192 (310)
Q Consensus 120 ~~~~~~~~~~~~g~v~~~d~~~~--~~~~~~~~~~-----~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~ 192 (310)
.+|.+..||...- +.+++.+... .+.-.+|++|++ ++.+...++.|..|+.........-.+
T Consensus 289 ----------~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~v 357 (641)
T KOG0772|consen 289 ----------YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKV 357 (641)
T ss_pred ----------CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEe
Confidence 3777777776543 2333332221 256789999998 677888899999998643222111122
Q ss_pred ee--CC-CCCCeeEECCCCCEEEEEecCC
Q 046018 193 AE--LP-GFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 193 ~~--~~-~~p~~i~~d~~G~l~va~~~~~ 218 (310)
.. .+ .....|.|+.+|++..+-....
T Consensus 358 k~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred eeccCCCCceeEEEeccccchhhhccCCC
Confidence 22 22 2357799999998877644433
No 176
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.83 E-value=0.12 Score=46.36 Aligned_cols=166 Identities=16% Similarity=0.231 Sum_probs=73.2
Q ss_pred ceeceEEEeCCCCcEEEEECC-------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY-------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR 119 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~-------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~ 119 (310)
..||-...-+ +|+++|+..+ +|++.+|.++-.+........+ ...+..++-..|..+ +.+++.-..+...
T Consensus 130 s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~-~~~~gYDfw~qpr~n-vMiSSeWg~P~~~ 206 (461)
T PF05694_consen 130 SRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRG-PQPFGYDFWYQPRHN-VMISSEWGAPSMF 206 (461)
T ss_dssp EEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-T-T------EEEETTTT-EEEE-B---HHHH
T ss_pred CCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCC-CCCCCCCeEEcCCCC-EEEEeccCChhhc
Confidence 5788887778 8999998764 2489999887655433332222 234667888889888 7777643211100
Q ss_pred h--hhhh-hh-----------------------------------------------cCCCCceEEEEeC-CCCeEE--E
Q 046018 120 Q--FMSS-IL-----------------------------------------------SGDKTGRLLKYEK-TTKEVT--I 146 (310)
Q Consensus 120 ~--~~~~-~~-----------------------------------------------~~~~~g~v~~~d~-~~~~~~--~ 146 (310)
. ...+ +. ...-++.|++|-. +.++.+ .
T Consensus 207 ~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~k 286 (461)
T PF05694_consen 207 EKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEK 286 (461)
T ss_dssp TT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEE
T ss_pred ccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeE
Confidence 0 0000 00 0111233444432 223221 1
Q ss_pred Eec------------C--------CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcc--eee------------
Q 046018 147 LLQ------------G--------LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQ--DVF------------ 192 (310)
Q Consensus 147 ~~~------------~--------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~--~~~------------ 192 (310)
+.+ . .+-+..|.++-|.++||++...++.|.+||+.....-+. +++
T Consensus 287 Vi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~ 366 (461)
T PF05694_consen 287 VIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPV 366 (461)
T ss_dssp EEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TT
T ss_pred EEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcc
Confidence 110 0 012467889999999999999999999999874311000 001
Q ss_pred -e--eCCCCCCeeEECCCC-CEEEEEe
Q 046018 193 -A--ELPGFPDNVRSNSNG-EFWVALH 215 (310)
Q Consensus 193 -~--~~~~~p~~i~~d~~G-~l~va~~ 215 (310)
. .+.+.|.-+.++-|| +|||++.
T Consensus 367 v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 367 VKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp S------S----EEE-TTSSEEEEE--
T ss_pred ccccccCCCCCeEEEccCCeEEEEEee
Confidence 0 123567888999999 6888764
No 177
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.81 E-value=0.048 Score=45.33 Aligned_cols=151 Identities=14% Similarity=0.025 Sum_probs=84.5
Q ss_pred EEEEEeCCCCC---eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECC-----Cc-eEEEeCCCCeE
Q 046018 10 RILKWQGDELG---WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAY-----LG-FQVVGPEGGLA 80 (310)
Q Consensus 10 ~i~~~~~~~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~-----~g-i~~~d~~~~~~ 80 (310)
.|++.+.+-.. -++.++..+..||+.+.+.............+.++. +|++.++... .+ |..++.+....
T Consensus 54 avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 54 AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSF-GGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred eEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeecc-CCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 45555554443 345555666667776644222233334445788888 6766555443 12 55555442110
Q ss_pred -----EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe--cCCcc
Q 046018 81 -----TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL--QGLAF 153 (310)
Q Consensus 81 -----~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~ 153 (310)
+++...+ .+-..+..+..+|-+.+|..+. .+|.|-.||..+|...+-. .....
T Consensus 133 ~~~s~ep~~kI~--t~~skit~a~Wg~l~~~ii~Gh------------------e~G~is~~da~~g~~~v~s~~~h~~~ 192 (327)
T KOG0643|consen 133 DIDSEEPYLKIP--TPDSKITSALWGPLGETIIAGH------------------EDGSISIYDARTGKELVDSDEEHSSK 192 (327)
T ss_pred hhcccCceEEec--CCccceeeeeecccCCEEEEec------------------CCCcEEEEEcccCceeeechhhhccc
Confidence 1121211 1124567777888888444333 5889999999877443321 12235
Q ss_pred cceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 154 ANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 154 ~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
.+.|.+++|.. .+++.+....-..+|..
T Consensus 193 Ind~q~s~d~T-~FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 193 INDLQFSRDRT-YFITGSKDTTAKLVDVR 220 (327)
T ss_pred cccccccCCcc-eEEecccCccceeeecc
Confidence 78999999987 67776665555555543
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.78 E-value=0.33 Score=45.59 Aligned_cols=164 Identities=17% Similarity=0.105 Sum_probs=90.4
Q ss_pred ceeceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchh-hhhhhhh
Q 046018 47 GRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQ-RRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~-~~~~~~~ 124 (310)
.+.+.+++-| +|. |.++ .+..++.+|++.|.+-...+... ...+.+|.+.||. .+.+....+.- .+...+
T Consensus 13 hci~d~afkP-DGsqL~lA-Ag~rlliyD~ndG~llqtLKgHK----DtVycVAys~dGk-rFASG~aDK~VI~W~~kl- 84 (1081)
T KOG1538|consen 13 HCINDIAFKP-DGTQLILA-AGSRLLVYDTSDGTLLQPLKGHK----DTVYCVAYAKDGK-RFASGSADKSVIIWTSKL- 84 (1081)
T ss_pred cchheeEECC-CCceEEEe-cCCEEEEEeCCCccccccccccc----ceEEEEEEccCCc-eeccCCCceeEEEecccc-
Confidence 4778899999 664 5554 55679999998876433322211 2478899999999 77766543210 000000
Q ss_pred hhcCCCCceEEEEeCCCCeEEEEe-------------c----------------CCcccceEEEecCCCeEEEEecCCce
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTILL-------------Q----------------GLAFANGVALSRDRTFILIAETSNCR 175 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~~-------------~----------------~~~~~~gi~~~~d~~~lyv~~~~~~~ 175 (310)
. .+++|... ...+.+. . .....++.+|..||..+.+ ...+++
T Consensus 85 ------E-G~LkYSH~-D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylal-G~~nGT 155 (1081)
T KOG1538|consen 85 ------E-GILKYSHN-DAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLAL-GMFNGT 155 (1081)
T ss_pred ------c-ceeeeccC-CeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEE-eccCce
Confidence 1 12222211 1111110 0 0112358899999985554 478888
Q ss_pred EEEEEccCCCCCcceeeeeCCCCC----CeeEECCC---C---CEEEEEecCCccceeeeeeccccccEEee
Q 046018 176 ILRFWLHGPNSGKQDVFAELPGFP----DNVRSNSN---G---EFWVALHAKKGLFGKLILLNSWLGKTLLK 237 (310)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~~~~~p----~~i~~d~~---G---~l~va~~~~~~~~~~~i~~~~~~g~~~~~ 237 (310)
|..-+..+. .....+-||.| .++++.+. | -+-|++|+.. +..+.-.|+++.+
T Consensus 156 IsiRNk~gE----ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT------LSFy~LsG~~Igk 217 (1081)
T KOG1538|consen 156 ISIRNKNGE----EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT------LSFYQLSGKQIGK 217 (1081)
T ss_pred EEeecCCCC----cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce------eEEEEecceeecc
Confidence 887754432 22222323222 45666543 2 3556666654 6777778888763
No 179
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.77 E-value=0.22 Score=44.35 Aligned_cols=150 Identities=11% Similarity=0.125 Sum_probs=90.1
Q ss_pred eeceEEEeCCCCc-EEEEECCC-----ceEEEeCCCCeEEEEEeecCCccccCCcceEEe-CCCCE-EEEEeCCCchhhh
Q 046018 48 RPLGIRFDKKTGD-LYIADAYL-----GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDID-EHKGV-IYFTDSSTSFQRR 119 (310)
Q Consensus 48 ~p~gl~~d~~~g~-l~v~~~~~-----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d-~~g~~-l~v~~~~~~~~~~ 119 (310)
....+.+.+ ++. |++....+ .+..+|+.++..+.+.......-+.....+.+. +++.. +|++. .
T Consensus 185 yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~------ 256 (353)
T PF00930_consen 185 YLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-R------ 256 (353)
T ss_dssp EEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-T------
T ss_pred CcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-c------
Confidence 344677777 555 77776542 277778887776655544322222233445543 44443 44444 2
Q ss_pred hhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecC----CceEEEEEcc-CCCCCcceeee
Q 046018 120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETS----NCRILRFWLH-GPNSGKQDVFA 193 (310)
Q Consensus 120 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~----~~~i~~~~~~-~~~~~~~~~~~ 193 (310)
+.-..|+.++.+++..+.+..+.-.. .-+.++++++.+|++... ...||+.+.+ ++ ..+.+.
T Consensus 257 ---------~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT 324 (353)
T PF00930_consen 257 ---------DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLT 324 (353)
T ss_dssp ---------TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESS
T ss_pred ---------CCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEecc
Confidence 12446999999887766554443333 357788998889887664 5689999887 43 334443
Q ss_pred eCCCCCC-eeEECCCCCEEEEEecCC
Q 046018 194 ELPGFPD-NVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 194 ~~~~~p~-~i~~d~~G~l~va~~~~~ 218 (310)
... ... .+.++++|+.++-...+.
T Consensus 325 ~~~-~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 325 CED-GDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp TTS-STTEEEEE-TTSSEEEEEEESS
T ss_pred CCC-CCceEEEECCCCCEEEEEEcCC
Confidence 322 234 799999999988877654
No 180
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.75 E-value=0.058 Score=47.20 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=92.4
Q ss_pred CcccccCcEEEEEeCCCCC-eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCe
Q 046018 2 PYTGVADGRILKWQGDELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGL 79 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~ 79 (310)
|+++..+..|..|+.+.+. -+. . . ...-...+.++. +|.++++.-.. .|..+|+++++
T Consensus 147 Llsag~Dn~v~iWnv~tgeali~--------l----------~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEALIT--------L----------D-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGT 206 (472)
T ss_pred HhhccCCceEEEEeccCCceeee--------c----------C-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCc
Confidence 4566777788888887753 221 0 0 123445788888 88988888774 59999999987
Q ss_pred EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEE-
Q 046018 80 ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA- 158 (310)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~- 158 (310)
+..-. .+-....+..+.+-.+|. ++.|.-. ++..-.+-.||++.=+.-.....+...||+.
T Consensus 207 ~v~e~---~~heG~k~~Raifl~~g~-i~tTGfs--------------r~seRq~aLwdp~nl~eP~~~~elDtSnGvl~ 268 (472)
T KOG0303|consen 207 VVSEG---VAHEGAKPARAIFLASGK-IFTTGFS--------------RMSERQIALWDPNNLEEPIALQELDTSNGVLL 268 (472)
T ss_pred Eeeec---ccccCCCcceeEEeccCc-eeeeccc--------------cccccceeccCcccccCcceeEEeccCCceEE
Confidence 54332 122334666777788887 6655432 1123346677775322212233445566764
Q ss_pred --EecCCCeEEEEecCCceEEEEEccC
Q 046018 159 --LSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 159 --~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
+++|.+.+|++.-+.+.|.-|....
T Consensus 269 PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 269 PFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred eeecCCCCEEEEEecCCcceEEEEecC
Confidence 5889999999999999999888754
No 181
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.71 E-value=0.4 Score=45.17 Aligned_cols=80 Identities=10% Similarity=0.119 Sum_probs=45.4
Q ss_pred ceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCcccc-CC-cceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLR-FT-NDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~-~~-~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
.++++. +++||+++....|+.+|.++++.. ........... .. ..-++ .++. +|++.....+
T Consensus 114 rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~-W~~~~~~~~~~~~~tssP~v-~~g~-Vivg~~~~~~----------- 177 (527)
T TIGR03075 114 RGVALY--DGKVFFGTLDARLVALDAKTGKVV-WSKKNGDYKAGYTITAAPLV-VKGK-VITGISGGEF----------- 177 (527)
T ss_pred ccceEE--CCEEEEEcCCCEEEEEECCCCCEE-eecccccccccccccCCcEE-ECCE-EEEeeccccc-----------
Confidence 355664 478999987777999999998752 11111111000 00 11112 2555 8887643211
Q ss_pred CCCCceEEEEeCCCCeEEE
Q 046018 128 GDKTGRLLKYEKTTKEVTI 146 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~~~~ 146 (310)
...|.|+.+|.++|+..-
T Consensus 178 -~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 178 -GVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred -CCCcEEEEEECCCCceeE
Confidence 125778899998887653
No 182
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.69 E-value=0.56 Score=43.99 Aligned_cols=176 Identities=10% Similarity=-0.013 Sum_probs=102.0
Q ss_pred cceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
..+..+|++.. +++|+-....+.|..+|+-+.+...-.+. ....++.|++.|.+..+-|+-
T Consensus 69 drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~----~gg~IWsiai~p~~~~l~Igc-------------- 129 (691)
T KOG2048|consen 69 DRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDS----NGGAIWSIAINPENTILAIGC-------------- 129 (691)
T ss_pred CCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecC----CCcceeEEEeCCccceEEeec--------------
Confidence 35777999987 89999887777799999988765433322 223578999999888555652
Q ss_pred hcCCCCceEEEEeCCCCeEEE--EecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcce--eeeeCC-CC-
Q 046018 126 LSGDKTGRLLKYEKTTKEVTI--LLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQD--VFAELP-GF- 198 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~--~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~--~~~~~~-~~- 198 (310)
.+|-++.++...+..+- ..... ...-.+.+.|++.++. +.+-.+.|.+||...+..-... .+..+. +.
T Consensus 130 ----ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~ 204 (691)
T KOG2048|consen 130 ----DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREP 204 (691)
T ss_pred ----CCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-ecccCceEEEEEcCCCceEEEeeecccccccCCc
Confidence 15555555554444432 11111 2345788888887544 5566778999987643221100 011111 11
Q ss_pred --CCeeEECCCCCEEEEEecCCccceeeeee-ccccccEEeeccchhhhhcccccC
Q 046018 199 --PDNVRSNSNGEFWVALHAKKGLFGKLILL-NSWLGKTLLKLPLSFRQLHSLLVG 251 (310)
Q Consensus 199 --p~~i~~d~~G~l~va~~~~~~~~~~~i~~-~~~~g~~~~~~~~~~~~~~~~~~~ 251 (310)
..++.+=.++.|.-++..+. +.. +...|.+++.+......+.+++..
T Consensus 205 ~iVWSv~~Lrd~tI~sgDS~G~------V~FWd~~~gTLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 205 TIVWSVLFLRDSTIASGDSAGT------VTFWDSIFGTLIQSHSCHDADVLALAVA 254 (691)
T ss_pred eEEEEEEEeecCcEEEecCCce------EEEEcccCcchhhhhhhhhcceeEEEEc
Confidence 24555557787766665544 333 345666665554443334344333
No 183
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.68 E-value=0.024 Score=48.24 Aligned_cols=151 Identities=12% Similarity=0.115 Sum_probs=82.3
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeec-CCcc---ccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEA-AGQP---LRFTNDLDIDEHKGVIYFTDSSTSFQRRQF 121 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~-~~~~---~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~ 121 (310)
.++.-..++| +|.-.+...-+| |-++|..+++++.-...- .+.. ......|.++.|.. +..+.+
T Consensus 214 Sh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGs--------- 282 (508)
T KOG0275|consen 214 SHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGS--------- 282 (508)
T ss_pred cchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccC---------
Confidence 4566677888 888777766677 777888888765422110 0100 01234555666665 444432
Q ss_pred hhhhhcCCCCceEEEEeCCCCeEEEEec--CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC
Q 046018 122 MSSILSGDKTGRLLKYEKTTKEVTILLQ--GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP 199 (310)
Q Consensus 122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 199 (310)
.+|.+-.|...+|.+-.-.+ .-.+...+.|+.|+..++-+ +....+.+--+..++. ...+..-..+.
T Consensus 283 --------qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~-sfD~tvRiHGlKSGK~--LKEfrGHsSyv 351 (508)
T KOG0275|consen 283 --------QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSA-SFDQTVRIHGLKSGKC--LKEFRGHSSYV 351 (508)
T ss_pred --------cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcc-cccceEEEeccccchh--HHHhcCccccc
Confidence 36777777666675533111 12335678899998865544 5555555543332211 11121112244
Q ss_pred CeeEECCCCCEEEEEecCCc
Q 046018 200 DNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 200 ~~i~~d~~G~l~va~~~~~~ 219 (310)
+...+.+||+-.++....+.
T Consensus 352 n~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASSDGT 371 (508)
T ss_pred cceEEcCCCCeEEEecCCcc
Confidence 56677788876666655554
No 184
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.68 E-value=0.37 Score=41.85 Aligned_cols=114 Identities=13% Similarity=0.115 Sum_probs=69.8
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
....-+.++. +|.+.++..-.| |..+...++..+..+.. +...+.=+..+|.++ ++++.+
T Consensus 107 DSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~----e~~dieWl~WHp~a~-illAG~------------- 167 (399)
T KOG0296|consen 107 DSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQ----EVEDIEWLKWHPRAH-ILLAGS------------- 167 (399)
T ss_pred CceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeec----ccCceEEEEeccccc-EEEeec-------------
Confidence 3455677877 666555443344 67777776654322221 112233356778888 666654
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
.+|.++.|...++....+..+...| +.=.+.|||+++... ..++.|.+|++..+
T Consensus 168 ----~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tg-y~dgti~~Wn~ktg 222 (399)
T KOG0296|consen 168 ----TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTG-YDDGTIIVWNPKTG 222 (399)
T ss_pred ----CCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEE-ecCceEEEEecCCC
Confidence 3888999987664444444443333 344688999977665 45789999999854
No 185
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.67 E-value=0.073 Score=49.86 Aligned_cols=82 Identities=18% Similarity=0.374 Sum_probs=50.0
Q ss_pred ccccCCcceEEeCCCCEEEEEeCCCchhhh--hhhhhhhcCCCCceEEEEeCCCC-------eEEEEec-----------
Q 046018 90 QPLRFTNDLDIDEHKGVIYFTDSSTSFQRR--QFMSSILSGDKTGRLLKYEKTTK-------EVTILLQ----------- 149 (310)
Q Consensus 90 ~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~--~~~~~~~~~~~~g~v~~~d~~~~-------~~~~~~~----------- 149 (310)
.+..+|.+|.++|....+|++.+....... ............|.|++|+++.+ +++.+..
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 356689999999875459999754321000 00000012345678999998765 4444321
Q ss_pred -------CCcccceEEEecCCCeEEEEecC
Q 046018 150 -------GLAFANGVALSRDRTFILIAETS 172 (310)
Q Consensus 150 -------~~~~~~gi~~~~d~~~lyv~~~~ 172 (310)
.+..|..|+++++|+ |||++-.
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~ 455 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPDGN-LWIQEDG 455 (524)
T ss_pred cCcccCCCcCCCCceEECCCCC-EEEEeCC
Confidence 134688999999998 7776543
No 186
>PHA02713 hypothetical protein; Provisional
Probab=96.63 E-value=0.66 Score=44.12 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=51.4
Q ss_pred CCcEEEEECC-------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018 58 TGDLYIADAY-------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK 130 (310)
Q Consensus 58 ~g~l~v~~~~-------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~ 130 (310)
++.||+.... ..+.++|+.+.....+... +......-++.-+|+ ||+...... ...
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m----~~~R~~~~~~~~~g~-IYviGG~~~------------~~~ 365 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM----IKNRCRFSLAVIDDT-IYAIGGQNG------------TNV 365 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC----cchhhceeEEEECCE-EEEECCcCC------------CCC
Confidence 5789998653 1278899988865433221 111222233444677 998753210 011
Q ss_pred CceEEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEe
Q 046018 131 TGRLLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAE 170 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~ 170 (310)
...+.+||+.+.++..+.+ ++.+ .+++. -+++ +|+..
T Consensus 366 ~~sve~Ydp~~~~W~~~~~-mp~~r~~~~~~~-~~g~-IYviG 405 (557)
T PHA02713 366 ERTIECYTMGDDKWKMLPD-MPIALSSYGMCV-LDQY-IYIIG 405 (557)
T ss_pred CceEEEEECCCCeEEECCC-CCcccccccEEE-ECCE-EEEEe
Confidence 3458999999888876543 2222 22332 2454 88864
No 187
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.62 E-value=0.47 Score=42.30 Aligned_cols=155 Identities=19% Similarity=0.267 Sum_probs=79.1
Q ss_pred eEEEeCC--CCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEe----CCCCE--EEEEeCCCchhhhhh
Q 046018 51 GIRFDKK--TGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDID----EHKGV--IYFTDSSTSFQRRQF 121 (310)
Q Consensus 51 gl~~d~~--~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d----~~g~~--l~v~~~~~~~~~~~~ 121 (310)
.|.+++. ...+++++.. .|++.+|.+++.+..+. .+ .+|.+-+- -.|+. |.+++....
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~---~G----r~NNVDvrygf~l~g~~vDlavas~R~~------ 124 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDGKELQSLP---VG----RPNNVDVRYGFPLNGKTVDLAVASDRSD------ 124 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS-EEEEE----SS-----EEEEEEEEEEEETTEEEEEEEEEE-CC------
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCCcEEEeec---CC----CcceeeeecceecCCceEEEEEEecCcC------
Confidence 3555531 3356666665 67999999987765441 11 33433321 12332 223321100
Q ss_pred hhhhhcCCCCceEEEEeCCCCeEEEEe-------cCCcccceEEEecC---CCeEEEEecCCceEEEEEccCCCCCc--c
Q 046018 122 MSSILSGDKTGRLLKYEKTTKEVTILL-------QGLAFANGVALSRD---RTFILIAETSNCRILRFWLHGPNSGK--Q 189 (310)
Q Consensus 122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~-------~~~~~~~gi~~~~d---~~~lyv~~~~~~~i~~~~~~~~~~~~--~ 189 (310)
+...=++|++|++++.++.+. .....+.|+|+..+ |+.-.+....++.+..|.+.....+. .
T Consensus 125 ------g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~ 198 (381)
T PF02333_consen 125 ------GRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA 198 (381)
T ss_dssp ------CT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE
T ss_pred ------CCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee
Confidence 001225888898888776543 23344779999753 55322344567888888775211221 1
Q ss_pred eeeee--CCCCCCeeEECCC-CCEEEEEecCCccceeeeeeccc
Q 046018 190 DVFAE--LPGFPDNVRSNSN-GEFWVALHAKKGLFGKLILLNSW 230 (310)
Q Consensus 190 ~~~~~--~~~~p~~i~~d~~-G~l~va~~~~~~~~~~~i~~~~~ 230 (310)
+.+.. .+..+.++++|.. |.||++.-..+ |.+|.+
T Consensus 199 ~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~~G------IW~y~A 236 (381)
T PF02333_consen 199 TLVREFKVGSQPEGCVVDDETGRLYVGEEDVG------IWRYDA 236 (381)
T ss_dssp EEEEEEE-SS-EEEEEEETTTTEEEEEETTTE------EEEEES
T ss_pred EEEEEecCCCcceEEEEecccCCEEEecCccE------EEEEec
Confidence 23333 4567888888754 79999987765 666653
No 188
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.54 E-value=0.22 Score=44.47 Aligned_cols=110 Identities=14% Similarity=0.218 Sum_probs=67.4
Q ss_pred ceEEEeCC--CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 50 LGIRFDKK--TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 50 ~gl~~d~~--~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
..|.++.. +.+||-+...+-+..+|...+.+-.-+.. -..+..+++||.++++|+++.
T Consensus 178 TDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-----p~si~av~lDpae~~~yiGt~--------------- 237 (476)
T KOG0646|consen 178 TDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-----PSSIKAVALDPAERVVYIGTE--------------- 237 (476)
T ss_pred EEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-----CCcceeEEEcccccEEEecCC---------------
Confidence 34555541 34677776655566778887764322221 125789999999998999874
Q ss_pred CCCCceEEEEeC-----------------CCCeEEEEecC--CcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 128 GDKTGRLLKYEK-----------------TTKEVTILLQG--LAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 128 ~~~~g~v~~~d~-----------------~~~~~~~~~~~--~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
.|.++..+. +..+...+... ......++++-||. |+++...++.|-+||+..
T Consensus 238 ---~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-lLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 238 ---EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT-LLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ---cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCcc-EEEeeCCCCCEEEEecch
Confidence 444444332 11111211111 12456899999998 777777889999999763
No 189
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=96.49 E-value=0.043 Score=48.13 Aligned_cols=180 Identities=11% Similarity=0.095 Sum_probs=101.3
Q ss_pred EEEEEeCCCCCeEEEEE-eccccccccCCCCCcccccc-ceeceEEEeCCCCcEEEEECCCceEE-EeCCCCeEEEEEee
Q 046018 10 RILKWQGDELGWTEFAV-TTSQRKECVRPFAPDIEHIC-GRPLGIRFDKKTGDLYIADAYLGFQV-VGPEGGLATQLVTE 86 (310)
Q Consensus 10 ~i~~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~~g~l~v~~~~~gi~~-~d~~~~~~~~~~~~ 86 (310)
.+.+|.++..+.+.+.. +....++-..=.|+.+.... .-...|.++. +|.-.|....+|..+ +.+.-..+..+ ..
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnnVk~~-~a 177 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNNVKII-QA 177 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhhhHHh-hH
Confidence 56778887665332222 22333333332222222222 2345788887 665445544456444 45543332211 11
Q ss_pred cCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCe
Q 046018 87 AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTF 165 (310)
Q Consensus 87 ~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~ 165 (310)
.....+++++++|+.. -+++-+. +|.|..||....+-+.+..+ .-.+..+.+.|...
T Consensus 178 ---hh~eaIRdlafSpnDs-kF~t~Sd-----------------Dg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg- 235 (464)
T KOG0284|consen 178 ---HHAEAIRDLAFSPNDS-KFLTCSD-----------------DGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG- 235 (464)
T ss_pred ---hhhhhhheeccCCCCc-eeEEecC-----------------CCeEEEEeccCCchhheeccCCCCcceeccCCccc-
Confidence 1123688999999877 7777644 78898998654444333333 33477899999876
Q ss_pred EEEEecCCceEEEEEccCCCCCcceeeeeC---CCCCCeeEECCCCCEEEEEecCC
Q 046018 166 ILIAETSNCRILRFWLHGPNSGKQDVFAEL---PGFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 166 lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~l~va~~~~~ 218 (310)
|+++.+.++-|-.+|+..+ ..+..+ ....-++.+.++|++..+.....
T Consensus 236 LiasgskDnlVKlWDprSg-----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 236 LIASGSKDNLVKLWDPRSG-----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred eeEEccCCceeEeecCCCc-----chhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 7777777778888888743 112221 12235678888887665554433
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.43 E-value=0.2 Score=43.49 Aligned_cols=132 Identities=14% Similarity=0.148 Sum_probs=77.5
Q ss_pred ccccccccCCCC-Cccccccceece-EEEeCCCCcEEEEECC---Cc-eEEEeCCCCeEEEEEeecCCccccCCcceEEe
Q 046018 28 TSQRKECVRPFA-PDIEHICGRPLG-IRFDKKTGDLYIADAY---LG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDID 101 (310)
Q Consensus 28 ~~~~~~~~~~~~-~~~~~~~~~p~g-l~~d~~~g~l~v~~~~---~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d 101 (310)
.++.||.+.=.. ..++.....|.| +|+++..++-|++-.. .| |+.+|..+-+....+....+ ..-.|+++
T Consensus 107 ~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~----~lAalafs 182 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKG----PLAALAFS 182 (391)
T ss_pred cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCC----ceeEEEEC
Confidence 355555443111 222334356665 4455544555666543 23 88888776543333332222 35679999
Q ss_pred CCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE-EeCCCCe-EEEEecC--CcccceEEEecCCCeEEEEecCCceEE
Q 046018 102 EHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK-YEKTTKE-VTILLQG--LAFANGVALSRDRTFILIAETSNCRIL 177 (310)
Q Consensus 102 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~-~d~~~~~-~~~~~~~--~~~~~gi~~~~d~~~lyv~~~~~~~i~ 177 (310)
++|. +..|.+. .|+|.| |...+|+ +..+..+ ......|+|++|+.+|-+ .+.++.|+
T Consensus 183 ~~G~-llATASe-----------------KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~-sS~TeTVH 243 (391)
T KOG2110|consen 183 PDGT-LLATASE-----------------KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA-SSNTETVH 243 (391)
T ss_pred CCCC-EEEEecc-----------------CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE-ecCCCeEE
Confidence 9999 7777654 777665 4544443 3333222 223468999999995554 47889999
Q ss_pred EEEcc
Q 046018 178 RFWLH 182 (310)
Q Consensus 178 ~~~~~ 182 (310)
+|.++
T Consensus 244 iFKL~ 248 (391)
T KOG2110|consen 244 IFKLE 248 (391)
T ss_pred EEEec
Confidence 99876
No 191
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=96.42 E-value=0.022 Score=33.16 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=31.1
Q ss_pred CCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEe
Q 046018 102 EHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALS 160 (310)
Q Consensus 102 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~ 160 (310)
|++++||+++.. .+.|..+|+.+++..........|.+|+++
T Consensus 1 pd~~~lyv~~~~-----------------~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSG-----------------SNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCC-----------------CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 466779999854 678999999877665544456778888874
No 192
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=96.40 E-value=0.47 Score=39.68 Aligned_cols=148 Identities=9% Similarity=0.015 Sum_probs=88.6
Q ss_pred ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
+...-+.+|. +-+..++... ..+-.+|.++++. ++....+ .....+-++.+|+.+.++....+.
T Consensus 53 GavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~--la~~k~~---~~Vk~~~F~~~gn~~l~~tD~~mg--------- 117 (327)
T KOG0643|consen 53 GAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQ--LATWKTN---SPVKRVDFSFGGNLILASTDKQMG--------- 117 (327)
T ss_pred ceEEEEEecC-CcceeeeccccceeEEEEcCCCcE--EEEeecC---CeeEEEeeccCCcEEEEEehhhcC---------
Confidence 4555666776 3333444333 3466778888874 3332112 235667889999966666544321
Q ss_pred hcCCCCceEEEEeCCC-------Ce-EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee---
Q 046018 126 LSGDKTGRLLKYEKTT-------KE-VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--- 194 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~-------~~-~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--- 194 (310)
..+.|..+|... .+ +.++......+.-..|+|-+++++ +...++.|.+||...+. +.+..
T Consensus 118 ----~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii-~Ghe~G~is~~da~~g~----~~v~s~~~ 188 (327)
T KOG0643|consen 118 ----YTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII-AGHEDGSISIYDARTGK----ELVDSDEE 188 (327)
T ss_pred ----cceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE-EecCCCcEEEEEcccCc----eeeechhh
Confidence 245566776542 22 233333445677888999998555 45678999999987431 11111
Q ss_pred CCCCCCeeEECCCCCEEEEEecCC
Q 046018 195 LPGFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 195 ~~~~p~~i~~d~~G~l~va~~~~~ 218 (310)
-....+.|.+.++...++......
T Consensus 189 h~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 189 HSSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred hccccccccccCCcceEEecccCc
Confidence 112457899999999888766544
No 193
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.041 Score=44.16 Aligned_cols=103 Identities=19% Similarity=0.267 Sum_probs=66.8
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEE-EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLAT-QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
+.-.||+.|. .+|++++...-++..||++-+.. .+.-...+.|....|.+..- +|. +|.-...
T Consensus 131 GeGWgLt~d~--~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~-lyANVw~------------ 194 (262)
T COG3823 131 GEGWGLTSDD--KNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGE-LYANVWQ------------ 194 (262)
T ss_pred CcceeeecCC--cceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccE-EEEeeee------------
Confidence 4445888765 46888876655777788764332 12112235556666766643 565 7765532
Q ss_pred hcCCCCceEEEEeCCCCeEEEEec-------------CCcccceEEEecCCCeEEEEe
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQ-------------GLAFANGVALSRDRTFILIAE 170 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~-------------~~~~~~gi~~~~d~~~lyv~~ 170 (310)
+.+|.+++|++|++....+ ...-+||||..|++.++|++.
T Consensus 195 -----t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 195 -----TTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred -----ecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 5679999999998875431 112368999999988899974
No 194
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.38 E-value=0.54 Score=40.19 Aligned_cols=139 Identities=9% Similarity=0.065 Sum_probs=81.1
Q ss_pred ceeceEEEeCCCCcEEEEECCC--ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCC---CEEEEEeCCCchhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYL--GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHK---GVIYFTDSSTSFQRRQF 121 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~--gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g---~~l~v~~~~~~~~~~~~ 121 (310)
+....+|++. .|++.... .|..+|....+. +..... ....++.+.+.+.- + |.-+
T Consensus 44 ~sitavAVs~----~~~aSGssDetI~IYDm~k~~q--lg~ll~--HagsitaL~F~~~~S~sh-LlS~----------- 103 (362)
T KOG0294|consen 44 GSITALAVSG----PYVASGSSDETIHIYDMRKRKQ--LGILLS--HAGSITALKFYPPLSKSH-LLSG----------- 103 (362)
T ss_pred cceeEEEecc----eeEeccCCCCcEEEEeccchhh--hcceec--cccceEEEEecCCcchhh-eeee-----------
Confidence 3445666643 47776552 488888775432 211110 11245556655443 3 3332
Q ss_pred hhhhhcCCCCceEEEEeCCCCeEEEEe---cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC
Q 046018 122 MSSILSGDKTGRLLKYEKTTKEVTILL---QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF 198 (310)
Q Consensus 122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~---~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (310)
..+|.+..|+.. .++.+. ..-...++|++.|.++ |-.+-.+.+.+..||+-.++ .....++...
T Consensus 104 -------sdDG~i~iw~~~--~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr---~a~v~~L~~~ 170 (362)
T KOG0294|consen 104 -------SDDGHIIIWRVG--SWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR---VAFVLNLKNK 170 (362)
T ss_pred -------cCCCcEEEEEcC--CeEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCc---cceeeccCCc
Confidence 247888888864 454332 2233479999999998 66665677888888875332 2223345556
Q ss_pred CCeeEECCCCCEEEEEecCC
Q 046018 199 PDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 199 p~~i~~d~~G~l~va~~~~~ 218 (310)
+..+.+++.|.-|+...++.
T Consensus 171 at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 171 ATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred ceeeEEcCCCCEEEEEeccE
Confidence 78899999998555444433
No 195
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=96.32 E-value=0.43 Score=42.55 Aligned_cols=173 Identities=18% Similarity=0.200 Sum_probs=85.1
Q ss_pred eccccccccCCCCCccccccceec------eEEEeCCCCcEEEEECC----C--ceEEEeCCCCeEEEEEeecC--Cccc
Q 046018 27 TTSQRKECVRPFAPDIEHICGRPL------GIRFDKKTGDLYIADAY----L--GFQVVGPEGGLATQLVTEAA--GQPL 92 (310)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~p~------gl~~d~~~g~l~v~~~~----~--gi~~~d~~~~~~~~~~~~~~--~~~~ 92 (310)
.||..||..+++.+.+. .+++. |+.+..+.-.|.++... . .++++|+.++.++.+..... ....
T Consensus 78 ~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~ 155 (381)
T PF02333_consen 78 GGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDL 155 (381)
T ss_dssp TEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SS
T ss_pred CCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCccccccc
Confidence 67888888884433332 24444 44443211124455443 1 28888998887765533210 1122
Q ss_pred cCCcceEE--eC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEe---CCCCeE----EEEecCCcccceEEEecC
Q 046018 93 RFTNDLDI--DE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYE---KTTKEV----TILLQGLAFANGVALSRD 162 (310)
Q Consensus 93 ~~~~~i~~--d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d---~~~~~~----~~~~~~~~~~~gi~~~~d 162 (310)
..+.++|. ++ +|. +|+-... +.|.+..|- ...+.+ .+-....+.+.|++++..
T Consensus 156 ~e~yGlcly~~~~~g~-~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe 218 (381)
T PF02333_consen 156 SEPYGLCLYRSPSTGA-LYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDE 218 (381)
T ss_dssp SSEEEEEEEE-TTT---EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETT
T ss_pred ccceeeEEeecCCCCc-EEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecc
Confidence 34667775 33 466 6655422 245444332 223322 122234567899999998
Q ss_pred CCeEEEEecCCceEEEEEccCCCCCcceeeeeC-----CCCCCeeEE--CCC--CCEEEEEecCCc
Q 046018 163 RTFILIAETSNCRILRFWLHGPNSGKQDVFAEL-----PGFPDNVRS--NSN--GEFWVALHAKKG 219 (310)
Q Consensus 163 ~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~p~~i~~--d~~--G~l~va~~~~~~ 219 (310)
...||+++.. ..||+|+.+.........+... ..-..||++ .++ |.|+++..+.+.
T Consensus 219 ~g~LYvgEE~-~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~s 283 (381)
T PF02333_consen 219 TGRLYVGEED-VGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNS 283 (381)
T ss_dssp TTEEEEEETT-TEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTE
T ss_pred cCCEEEecCc-cEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCe
Confidence 8889999755 7999998874322222333221 122345544 343 456666655544
No 196
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.32 E-value=0.095 Score=44.72 Aligned_cols=114 Identities=16% Similarity=0.219 Sum_probs=63.8
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEE-eCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVV-GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~-d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
.....+.++.++..+.-+... ...|+ ..++++. .+...+ -..+.|+..+.+||+++. +.+.
T Consensus 307 kGvt~l~FSrD~SqiLS~sfD-~tvRiHGlKSGK~---LKEfrG-HsSyvn~a~ft~dG~~ii-saSs------------ 368 (508)
T KOG0275|consen 307 KGVTCLSFSRDNSQILSASFD-QTVRIHGLKSGKC---LKEFRG-HSSYVNEATFTDDGHHII-SASS------------ 368 (508)
T ss_pred cCeeEEEEccCcchhhccccc-ceEEEeccccchh---HHHhcC-ccccccceEEcCCCCeEE-EecC------------
Confidence 345567787744445444333 34444 3444442 122222 234789999999999444 4332
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCc---ccceEEEecC-CCeEEEEecCCceEEEEEccCC
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLA---FANGVALSRD-RTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~---~~~gi~~~~d-~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
+|.|-.|+.+++++..-...++ ..|.+-+-|. ..+++|++ .++.|++.++.|+
T Consensus 369 -----DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-rsntv~imn~qGQ 425 (508)
T KOG0275|consen 369 -----DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-RSNTVYIMNMQGQ 425 (508)
T ss_pred -----CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-CCCeEEEEeccce
Confidence 7889999987765432111111 1244444443 34566664 4578888887764
No 197
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.32 E-value=0.11 Score=44.47 Aligned_cols=140 Identities=8% Similarity=0.056 Sum_probs=82.9
Q ss_pred CCcEEEEECCCc-eEEEeCCCCeEEEEEeec-CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE
Q 046018 58 TGDLYIADAYLG-FQVVGPEGGLATQLVTEA-AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL 135 (310)
Q Consensus 58 ~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~ 135 (310)
+-.||++..... |-.+|.-+++++--...+ .-........++++|||..||.+. ...|.
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-------------------krcir 182 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-------------------KRCIR 182 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-------------------cceEE
Confidence 556777766644 777888888764322211 111344578899999999777765 45677
Q ss_pred EEeC-CCCeEEE----EecC----CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018 136 KYEK-TTKEVTI----LLQG----LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS 206 (310)
Q Consensus 136 ~~d~-~~~~~~~----~~~~----~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 206 (310)
.||. ..|+... +..+ ..-...++++|-...++...+..+++-+|.-++. .....+..-.+...-+.+-+
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~--~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR--RPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC--CceeeecccCCCeeeEEecc
Confidence 7775 2232221 1111 1124578999965557777788888888876643 12223322334455678888
Q ss_pred CCC-EEEEEecCC
Q 046018 207 NGE-FWVALHAKK 218 (310)
Q Consensus 207 ~G~-l~va~~~~~ 218 (310)
+|+ ||++.....
T Consensus 261 dGn~lfsGaRk~d 273 (406)
T KOG2919|consen 261 DGNKLFSGARKDD 273 (406)
T ss_pred CcCeecccccCCC
Confidence 885 665554433
No 198
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.29 E-value=0.65 Score=40.25 Aligned_cols=168 Identities=13% Similarity=0.117 Sum_probs=77.3
Q ss_pred eEEEEEeccccccccCCCCCccc---cccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcc
Q 046018 21 WTEFAVTTSQRKECVRPFAPDIE---HICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTND 97 (310)
Q Consensus 21 W~~~~~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~ 97 (310)
|+-++...+.+..-.+...+.+. ...+.+.++.... ++.++++.....|++-.=.+..-+.+... .....++
T Consensus 75 ~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l~~~~G~iy~T~DgG~tW~~~~~~----~~gs~~~ 149 (302)
T PF14870_consen 75 WIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAELAGDRGAIYRTTDGGKTWQAVVSE----TSGSIND 149 (302)
T ss_dssp EEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEEEETT--EEEESSTTSSEEEEE-S--------EEE
T ss_pred EEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEEEcCCCcEEEeCCCCCCeeEcccC----CcceeEe
Confidence 66555444444433443333332 1234566666555 56777776665576654333343433221 1234677
Q ss_pred eEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE-EEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCce
Q 046018 98 LDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL-KYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCR 175 (310)
Q Consensus 98 i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~-~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~ 175 (310)
+...++|+++.++. .|.++ .+++-....+.... .......|.+.||+. ||++. ..+.
T Consensus 150 ~~r~~dG~~vavs~-------------------~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-lw~~~-~Gg~ 208 (302)
T PF14870_consen 150 ITRSSDGRYVAVSS-------------------RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-LWMLA-RGGQ 208 (302)
T ss_dssp EEE-TTS-EEEEET-------------------TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--EEEEE-TTTE
T ss_pred EEECCCCcEEEEEC-------------------cccEEEEecCCCccceEEccCccceehhceecCCCC-EEEEe-CCcE
Confidence 88889998333433 45555 56664333554332 234467899999987 87764 4455
Q ss_pred EEEEEccCCCCCcceeeee--CC----CC-CCeeEECCCCCEEEEEecCC
Q 046018 176 ILRFWLHGPNSGKQDVFAE--LP----GF-PDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 176 i~~~~~~~~~~~~~~~~~~--~~----~~-p~~i~~d~~G~l~va~~~~~ 218 (310)
|..=+... ..+.+.. .+ ++ --.+++.+++.+|++...+.
T Consensus 209 ~~~s~~~~----~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~ 254 (302)
T PF14870_consen 209 IQFSDDPD----DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT 254 (302)
T ss_dssp EEEEE-TT----EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-
T ss_pred EEEccCCC----CccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc
Confidence 55544111 1122211 11 11 12368888899999887654
No 199
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.28 E-value=0.13 Score=46.85 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=73.1
Q ss_pred eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec
Q 046018 70 FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ 149 (310)
Q Consensus 70 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~ 149 (310)
+++++.++++..++... .+ .-..-+++|||++|.++... +..-.+|.+|..++....+..
T Consensus 220 i~~~~l~~g~~~~i~~~-~g----~~~~P~fspDG~~l~f~~~r---------------dg~~~iy~~dl~~~~~~~Lt~ 279 (425)
T COG0823 220 IYYLDLNTGKRPVILNF-NG----NNGAPAFSPDGSKLAFSSSR---------------DGSPDIYLMDLDGKNLPRLTN 279 (425)
T ss_pred EEEEeccCCccceeecc-CC----ccCCccCCCCCCEEEEEECC---------------CCCccEEEEcCCCCcceeccc
Confidence 55556665554433331 01 12345678899877777643 234469999998777555443
Q ss_pred CCcccceEEEecCCCeEEEEecCC--ceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEe
Q 046018 150 GLAFANGVALSRDRTFILIAETSN--CRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALH 215 (310)
Q Consensus 150 ~~~~~~gi~~~~d~~~lyv~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~ 215 (310)
.......-.++|||+.++++.... -.|++++++++.. +.+....+....-..++||...+-..
T Consensus 280 ~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 280 GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---TRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---eEeeccCCCCcCccCCCCCCEEEEEe
Confidence 333333567999999887765443 3788888876533 33332222233566788887666554
No 200
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.27 E-value=1 Score=42.96 Aligned_cols=113 Identities=9% Similarity=0.030 Sum_probs=62.3
Q ss_pred CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCc
Q 046018 95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNC 174 (310)
Q Consensus 95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~ 174 (310)
...-.++|+|+.+|+....... ..+......+.++..+.+.++... .....+..+.++|||+++.+.. .+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~------~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~--~g 468 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTV------VRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII--GG 468 (591)
T ss_pred CCCceECCCCCceEEEecCcce------EEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE--CC
Confidence 3445788997778887533110 001111234567766666554443 2223478899999999886654 35
Q ss_pred eEEE---EEccCCC--CCcceeeee-CCCCCCeeEECCCCCEEEEEecC
Q 046018 175 RILR---FWLHGPN--SGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAK 217 (310)
Q Consensus 175 ~i~~---~~~~~~~--~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~ 217 (310)
+|++ ...+++. ++....+.. +...+..+.+-.++.|.|+....
T Consensus 469 ~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~ 517 (591)
T PRK13616 469 KVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDP 517 (591)
T ss_pred EEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCC
Confidence 7777 4433331 111111222 22334667777888887775543
No 201
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.17 E-value=0.59 Score=39.98 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=49.8
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE-EeCCCCeEEE-EecCC--cccceEEEecCCCeEEEE
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK-YEKTTKEVTI-LLQGL--AFANGVALSRDRTFILIA 169 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~-~d~~~~~~~~-~~~~~--~~~~gi~~~~d~~~lyv~ 169 (310)
.+..|+..-+|. +..|.+. .|++.| ||..+|+... +..+. .....|+|+|+..+|-++
T Consensus 183 ~Iacv~Ln~~Gt-~vATaSt-----------------kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs 244 (346)
T KOG2111|consen 183 DIACVALNLQGT-LVATAST-----------------KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS 244 (346)
T ss_pred ceeEEEEcCCcc-EEEEecc-----------------CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE
Confidence 355677888998 7776654 787665 7887775433 33222 234689999999966655
Q ss_pred ecCCceEEEEEccC
Q 046018 170 ETSNCRILRFWLHG 183 (310)
Q Consensus 170 ~~~~~~i~~~~~~~ 183 (310)
+..++|++|.+..
T Consensus 245 -SdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 245 -SDKGTLHIFSLRD 257 (346)
T ss_pred -cCCCeEEEEEeec
Confidence 7889999998864
No 202
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=96.08 E-value=0.79 Score=43.22 Aligned_cols=209 Identities=14% Similarity=0.108 Sum_probs=98.3
Q ss_pred CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY 137 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~ 137 (310)
.++|.++....-|.++...+... +... .+- ....-++....++. + ++.+ | +.++.+|
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P--~~~L-kgH-~snVC~ls~~~~~~-~-iSgS---W--------------D~TakvW 127 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEP--LYTL-KGH-KSNVCSLSIGEDGT-L-ISGS---W--------------DSTAKVW 127 (745)
T ss_pred CcceEeecccceEEEEecCCCCc--hhhh-hcc-ccceeeeecCCcCc-e-Eecc---c--------------ccceEEe
Confidence 56788887766677777765542 2211 111 11233444445554 3 3432 2 3333334
Q ss_pred eCCCCeEEEEecCCcc-cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEec
Q 046018 138 EKTTKEVTILLQGLAF-ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHA 216 (310)
Q Consensus 138 d~~~~~~~~~~~~~~~-~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~ 216 (310)
-. +++.....+... .-.++.-|++ .|++.+....|..|.-+. . ...+..-....+++++=+++.+.-+.++
T Consensus 128 ~~--~~l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~~--~--l~tf~gHtD~VRgL~vl~~~~flScsND 199 (745)
T KOG0301|consen 128 RI--GELVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGGT--L--LKTFSGHTDCVRGLAVLDDSHFLSCSND 199 (745)
T ss_pred cc--hhhhcccCCcchheeeeeecCCC--cEEeccCcceeeeccCCc--h--hhhhccchhheeeeEEecCCCeEeecCC
Confidence 32 122211222211 2355556665 688888888888885321 1 1112111123466777666666555555
Q ss_pred CCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEEc-CCCCeeccee-----EEEEeCC
Q 046018 217 KKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLED-CEGKTLSFIS-----EVEEKDG 290 (310)
Q Consensus 217 ~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~-~~g~~~~~~~-----~~~~~~g 290 (310)
+. |...+.+|+.+.+.........++. -..+...++....|+ .++.|.. .....+..++ .-+..+|
T Consensus 200 g~------Ir~w~~~ge~l~~~~ghtn~vYsis-~~~~~~~Ivs~gEDr-tlriW~~~e~~q~I~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 200 GS------IRLWDLDGEVLLEMHGHTNFVYSIS-MALSDGLIVSTGEDR-TLRIWKKDECVQVITLPTTSIWSAKVLLNG 271 (745)
T ss_pred ce------EEEEeccCceeeeeeccceEEEEEE-ecCCCCeEEEecCCc-eEEEeecCceEEEEecCccceEEEEEeeCC
Confidence 54 5666667777666543322222222 111223444444333 3344431 1111112221 2223478
Q ss_pred EEEEecCCCCeEEEec
Q 046018 291 QLWMGSVLMPFIGIYN 306 (310)
Q Consensus 291 ~l~vgs~~~~~i~~~~ 306 (310)
.+++|+- +.+|++|-
T Consensus 272 DIvvg~S-DG~VrVfT 286 (745)
T KOG0301|consen 272 DIVVGGS-DGRVRVFT 286 (745)
T ss_pred CEEEecc-CceEEEEE
Confidence 8888885 56666653
No 203
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.07 E-value=0.73 Score=45.39 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=63.3
Q ss_pred ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-cc
Q 046018 153 FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WL 231 (310)
Q Consensus 153 ~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~ 231 (310)
....++++||+. ++++-+..++|.+|+... ......+..-.+.+-|+.+||-|+.+.+..+.+. +.++. .+
T Consensus 131 DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~t--F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrt-----ikvwrt~d 202 (942)
T KOG0973|consen 131 DVLDVNWSPDDS-LLVSVSLDNSVIIWNAKT--FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRT-----LKVWRTSD 202 (942)
T ss_pred ccceeccCCCcc-EEEEecccceEEEEcccc--ceeeeeeecccccccceEECCccCeeeeecCCce-----EEEEEccc
Confidence 345789999988 777778889999998653 2222333333456789999999998877777665 34443 22
Q ss_pred ccEEeeccchhhhhcccccCCCCceEEEEE--CCCCCEEEEE
Q 046018 232 GKTLLKLPLSFRQLHSLLVGGKPHATAIKL--SEKGEVLEVL 271 (310)
Q Consensus 232 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~g~~~~~~ 271 (310)
-...+.+.-|.+. ....+.+.|+ +|||+.+..-
T Consensus 203 w~i~k~It~pf~~-------~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 203 WGIEKSITKPFEE-------SPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred ceeeEeeccchhh-------CCCcceeeecccCCCcCeecch
Confidence 2233444333221 1112344454 5888877654
No 204
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.06 E-value=0.81 Score=39.95 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=67.0
Q ss_pred cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEec
Q 046018 93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAET 171 (310)
Q Consensus 93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~ 171 (310)
..+..|...+||. .+++.+. .+..+..||++++...++. .+++...-+-++||+..++.+ +
T Consensus 196 ~pVtsmqwn~dgt-~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaA-t 257 (445)
T KOG2139|consen 196 NPVTSMQWNEDGT-ILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAA-T 257 (445)
T ss_pred ceeeEEEEcCCCC-EEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEe-c
Confidence 3456788889998 8887643 3667999999999887766 445555678899999977766 4
Q ss_pred CCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC-EEEEEecCC
Q 046018 172 SNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE-FWVALHAKK 218 (310)
Q Consensus 172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~~~ 218 (310)
-+....+++..-... .+.+.-.++.....+.+++|+ |.++.....
T Consensus 258 ~davfrlw~e~q~wt--~erw~lgsgrvqtacWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWT--KERWILGSGRVQTACWSPCGSFLLFACSGSP 303 (445)
T ss_pred ccceeeeehhcccce--ecceeccCCceeeeeecCCCCEEEEEEcCCc
Confidence 444433342321111 222322345556778889985 445554443
No 205
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.01 E-value=0.35 Score=43.22 Aligned_cols=104 Identities=10% Similarity=0.160 Sum_probs=68.0
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE---EecC-------Cc---ccceEEEe
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI---LLQG-------LA---FANGVALS 160 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---~~~~-------~~---~~~gi~~~ 160 (310)
.+..+++-.+.+ +..+. .+|.|+.|+....+..- ++.+ .. ..++++..
T Consensus 329 sidcv~~In~~H-fvsGS------------------dnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i 389 (479)
T KOG0299|consen 329 SIDCVAFINDEH-FVSGS------------------DNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVI 389 (479)
T ss_pred CeeeEEEecccc-eeecc------------------CCceEEEeeecccCceeEeeccccccCCccccccccceeeeEec
Confidence 567777777766 44333 37889999876543321 1111 11 34678888
Q ss_pred cCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCCCeeEECCCCC-EEEEEecCC
Q 046018 161 RDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFPDNVRSNSNGE-FWVALHAKK 218 (310)
Q Consensus 161 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~-l~va~~~~~ 218 (310)
|... |+.+.+++++|..|-...+ .....++.. +.+..+.+++.++|. ||++....+
T Consensus 390 ~~sd-L~asGS~~G~vrLW~i~~g-~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEh 448 (479)
T KOG0299|consen 390 PGSD-LLASGSWSGCVRLWKIEDG-LRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEH 448 (479)
T ss_pred ccCc-eEEecCCCCceEEEEecCC-ccccceeeecccccEEEEEEEccCCCEEEEeccccc
Confidence 8766 8899899999999877643 223344444 347788999999997 777765443
No 206
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=96.01 E-value=0.039 Score=32.06 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=29.0
Q ss_pred cCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEEC
Q 046018 161 RDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSN 205 (310)
Q Consensus 161 ~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d 205 (310)
||+++||+++...+.|.++|.... ...........|.+++++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~---~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN---KVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC---eEEEEEECCCCCceEEeC
Confidence 578899999999999999997532 111111234578888764
No 207
>PHA02713 hypothetical protein; Provisional
Probab=96.01 E-value=0.5 Score=44.91 Aligned_cols=148 Identities=10% Similarity=0.064 Sum_probs=74.5
Q ss_pred CCcEEEEECCC------ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCc---hhhhhhhhhh---
Q 046018 58 TGDLYIADAYL------GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTS---FQRRQFMSSI--- 125 (310)
Q Consensus 58 ~g~l~v~~~~~------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~---~~~~~~~~~~--- 125 (310)
+|+||+..... .+.++|+.+.+.+.+...+ ......-++.-+|+ ||+...... +........+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp----~~r~~~~~~~~~g~-IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP----IALSSYGMCVLDQY-IYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC----cccccccEEEECCE-EEEEeCCCccccccccccccccccc
Confidence 57999986542 2788899988765443221 11111122334677 998753210 0000000000
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCc--ccceEEEecCCCeEEEEecCC------ceEEEEEccCCCCCcceeeeeCC-
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLA--FANGVALSRDRTFILIAETSN------CRILRFWLHGPNSGKQDVFAELP- 196 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~--~~~gi~~~~d~~~lyv~~~~~------~~i~~~~~~~~~~~~~~~~~~~~- 196 (310)
........+.+|||++.+++.+.+-.. ...+++.- +++ ||+....+ ..+.+||+... .......+++
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~-~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~--~~W~~~~~m~~ 501 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH-KDD-IYVVCDIKDEKNVKTCIFRYNTNTY--NGWELITTTES 501 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEEEE-CCE-EEEEeCCCCCCccceeEEEecCCCC--CCeeEccccCc
Confidence 000013469999999998886543211 12344433 454 88874321 35788998741 1233343433
Q ss_pred -CCCCeeEECCCCCEEEEEe
Q 046018 197 -GFPDNVRSNSNGEFWVALH 215 (310)
Q Consensus 197 -~~p~~i~~d~~G~l~va~~ 215 (310)
..--++++ -+|.||+...
T Consensus 502 ~r~~~~~~~-~~~~iyv~Gg 520 (557)
T PHA02713 502 RLSALHTIL-HDNTIMMLHC 520 (557)
T ss_pred ccccceeEE-ECCEEEEEee
Confidence 22233433 3688998643
No 208
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.99 E-value=0.89 Score=43.17 Aligned_cols=136 Identities=9% Similarity=0.104 Sum_probs=87.2
Q ss_pred EEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018 52 IRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT 131 (310)
Q Consensus 52 l~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (310)
+++++ +|...++.-...|..+|..++... .............+++++||+..|+.+. ..
T Consensus 25 ~~~s~-nG~~L~t~~~d~Vi~idv~t~~~~--l~s~~~ed~d~ita~~l~~d~~~L~~a~------------------rs 83 (775)
T KOG0319|consen 25 VAWSS-NGQHLYTACGDRVIIIDVATGSIA--LPSGSNEDEDEITALALTPDEEVLVTAS------------------RS 83 (775)
T ss_pred eeECC-CCCEEEEecCceEEEEEccCCcee--cccCCccchhhhheeeecCCccEEEEee------------------cc
Confidence 78888 888877777777888998888753 1221122234577899999998555554 13
Q ss_pred ceEEEEeCCCCeEEEEecC-Cccc-ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC
Q 046018 132 GRLLKYEKTTKEVTILLQG-LAFA-NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE 209 (310)
Q Consensus 132 g~v~~~d~~~~~~~~~~~~-~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 209 (310)
.-+-.|..+++++...... ...| -.++++|-+ .|..+....+.|-+||..++.- ...+...||....+.+.++=+
T Consensus 84 ~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g-~LlAtggaD~~v~VWdi~~~~~--th~fkG~gGvVssl~F~~~~~ 160 (775)
T KOG0319|consen 84 QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTG-TLLATGGADGRVKVWDIKNGYC--THSFKGHGGVVSSLLFHPHWN 160 (775)
T ss_pred ceEEEEEcccchHhHhHhhccCCCeEEEEEcCCC-ceEEeccccceEEEEEeeCCEE--EEEecCCCceEEEEEeCCccc
Confidence 4455677777755443322 2344 578999888 4777777788999999875421 122444455556677766654
Q ss_pred EE
Q 046018 210 FW 211 (310)
Q Consensus 210 l~ 211 (310)
.|
T Consensus 161 ~~ 162 (775)
T KOG0319|consen 161 RW 162 (775)
T ss_pred hh
Confidence 43
No 209
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.92 E-value=0.12 Score=45.87 Aligned_cols=104 Identities=19% Similarity=0.194 Sum_probs=56.2
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecC
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETS 172 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~ 172 (310)
+...=++.++|+.|+++... +....++.+|.++++++.+..... ...|..++++.+.+|+.. .
T Consensus 37 YF~~~~ft~dG~kllF~s~~---------------dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~ 100 (386)
T PF14583_consen 37 YFYQNCFTDDGRKLLFASDF---------------DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-N 100 (386)
T ss_dssp -TTS--B-TTS-EEEEEE-T---------------TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-T
T ss_pred eecCCCcCCCCCEEEEEecc---------------CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-C
Confidence 45555678889777776642 235579999999999988765432 244788889888876552 4
Q ss_pred CceEEEEEccCCCCCcceeeeeCC-CCC--CeeEECCCCCEEEEEec
Q 046018 173 NCRILRFWLHGPNSGKQDVFAELP-GFP--DNVRSNSNGEFWVALHA 216 (310)
Q Consensus 173 ~~~i~~~~~~~~~~~~~~~~~~~~-~~p--~~i~~d~~G~l~va~~~ 216 (310)
.+.|.++|+++.+ .+.+...| ... .....++++..+++...
T Consensus 101 ~~~l~~vdL~T~e---~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~ 144 (386)
T PF14583_consen 101 GRSLRRVDLDTLE---ERVVYEVPDDWKGYGTWVANSDCTKLVGIEI 144 (386)
T ss_dssp TTEEEEEETTT-----EEEEEE--TTEEEEEEEEE-TTSSEEEEEEE
T ss_pred CCeEEEEECCcCc---EEEEEECCcccccccceeeCCCccEEEEEEE
Confidence 5799999988642 22333332 222 22345778888776543
No 210
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.89 E-value=0.51 Score=44.91 Aligned_cols=170 Identities=14% Similarity=0.138 Sum_probs=93.8
Q ss_pred cEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc------eEEEeCCCCeEEE
Q 046018 9 GRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG------FQVVGPEGGLATQ 82 (310)
Q Consensus 9 ~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g------i~~~d~~~~~~~~ 82 (310)
..+.++|+..+.|+..+... ....-.|++.- +|.||+.....| +-++|+++.+.+.
T Consensus 349 ~~ve~YD~~~~~W~~~a~M~----------------~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 349 SSVERYDPRTNQWTPVAPMN----------------TKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred ceEEEecCCCCceeccCCcc----------------CccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccc
Confidence 35777777777677411111 11223355544 689999876533 8889999988765
Q ss_pred EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcc--cceEEEe
Q 046018 83 LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAF--ANGVALS 160 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~--~~gi~~~ 160 (310)
..... ...-..-++.-+|. ||+..-.... ...-..+.+|||.+++++...+-... -.|++..
T Consensus 411 va~m~----~~r~~~gv~~~~g~-iYi~GG~~~~-----------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~ 474 (571)
T KOG4441|consen 411 VAPML----TRRSGHGVAVLGGK-LYIIGGGDGS-----------SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL 474 (571)
T ss_pred cCCCC----cceeeeEEEEECCE-EEEEcCcCCC-----------ccccceEEEEcCCCCceeecCCcccccccceEEEE
Confidence 53221 11222233345676 9998642110 00235689999999998875532222 2344444
Q ss_pred cCCCeEEEEecCC-----ceEEEEEccCCCCCcceeeeeC--CCCCCeeEECCCCCEEEEEecCC
Q 046018 161 RDRTFILIAETSN-----CRILRFWLHGPNSGKQDVFAEL--PGFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 161 ~d~~~lyv~~~~~-----~~i~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~G~l~va~~~~~ 218 (310)
++ .||+....+ .+|.+||+... ....+... +...-+++.. +|.+|+.....+
T Consensus 475 -~~-~iYvvGG~~~~~~~~~VE~ydp~~~---~W~~v~~m~~~rs~~g~~~~-~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 475 -NG-KIYVVGGFDGTSALSSVERYDPETN---QWTMVAPMTSPRSAVGVVVL-GGKLYAVGGFDG 533 (571)
T ss_pred -CC-EEEEECCccCCCccceEEEEcCCCC---ceeEcccCccccccccEEEE-CCEEEEEecccC
Confidence 33 488875432 34888988743 33344332 2223345553 567777654433
No 211
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.89 E-value=0.58 Score=44.71 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=72.9
Q ss_pred ceEEEeCCCCcEEEEECCCceEEEeCCCCeE-EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018 50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLA-TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG 128 (310)
Q Consensus 50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~ 128 (310)
..|.+++ ++.|.-+.+..-|..+++..... ..+... .++.+|++.|-..+.+++.+-
T Consensus 373 LDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn------dfVTcVaFnPvDDryFiSGSL--------------- 430 (712)
T KOG0283|consen 373 LDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSHN------DFVTCVAFNPVDDRYFISGSL--------------- 430 (712)
T ss_pred eeccccc-CCeeEeccccccEEeecCCCcceeeEEecC------CeeEEEEecccCCCcEeeccc---------------
Confidence 3677776 77777776665455556654433 223222 378899999866547776543
Q ss_pred CCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 129 DKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 129 ~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
++.+..|+....++.-..+.......+++.|||+..+|. +.++....|+..+-
T Consensus 431 --D~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIG-t~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 431 --DGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIG-TFNGYCRFYDTEGL 483 (712)
T ss_pred --ccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEE-EeccEEEEEEccCC
Confidence 888888987655554433333447889999999966654 78888888887653
No 212
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.88 E-value=0.33 Score=46.13 Aligned_cols=149 Identities=10% Similarity=0.032 Sum_probs=89.0
Q ss_pred ccccceeceEEEeCCCCcEEEEECCCc---eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018 43 EHICGRPLGIRFDKKTGDLYIADAYLG---FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRR 119 (310)
Q Consensus 43 ~~~~~~p~gl~~d~~~g~l~v~~~~~g---i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~ 119 (310)
.........+.++| +|++.++..-+. |+.+| +-++ +...+ +-.+ -..+|-+++|++ +.+|.+.
T Consensus 505 Lel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflD--tlKF--flsLY-GHkL-PV~smDIS~DSk-livTgSA------ 570 (888)
T KOG0306|consen 505 LELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLD--TLKF--FLSLY-GHKL-PVLSMDISPDSK-LIVTGSA------ 570 (888)
T ss_pred EeccccEEEEEEcC-CCcEEEEEeccCeEEEEEec--ceee--eeeec-cccc-ceeEEeccCCcC-eEEeccC------
Confidence 33345566788999 888777766543 55544 3332 22222 1111 135678889999 8888754
Q ss_pred hhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC
Q 046018 120 QFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF 198 (310)
Q Consensus 120 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (310)
+.+|-.|-.+-|.+..-. ......-.+.|-|+.. ++++....+.|-.||-+ +....+.+..-...
T Consensus 571 -----------DKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~-~FFt~gKD~kvKqWDg~--kFe~iq~L~~H~~e 636 (888)
T KOG0306|consen 571 -----------DKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTH-LFFTCGKDGKVKQWDGE--KFEEIQKLDGHHSE 636 (888)
T ss_pred -----------CCceEEeccccchhhhhhhcccCceeEEEEcccce-eEEEecCcceEEeechh--hhhhheeeccchhe
Confidence 455667766667665422 1112235677888654 78887888899998743 22222222111123
Q ss_pred CCeeEECCCCCEEEEEecCCc
Q 046018 199 PDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 199 p~~i~~d~~G~l~va~~~~~~ 219 (310)
...+++.++|.+.|+......
T Consensus 637 v~cLav~~~G~~vvs~shD~s 657 (888)
T KOG0306|consen 637 VWCLAVSPNGSFVVSSSHDKS 657 (888)
T ss_pred eeeeEEcCCCCeEEeccCCce
Confidence 567899999998888766554
No 213
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=95.88 E-value=0.12 Score=47.73 Aligned_cols=68 Identities=21% Similarity=0.325 Sum_probs=46.8
Q ss_pred CcccceEEEecCCCeEEEEecCCc----------------eEEEEEccCC----CCCcceeeeeC--C------------
Q 046018 151 LAFANGVALSRDRTFILIAETSNC----------------RILRFWLHGP----NSGKQDVFAEL--P------------ 196 (310)
Q Consensus 151 ~~~~~gi~~~~d~~~lyv~~~~~~----------------~i~~~~~~~~----~~~~~~~~~~~--~------------ 196 (310)
...|.+|++.|..+.+|++.+.+. .|++|-+.+. .....++|... +
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~ 495 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANIN 495 (616)
T ss_pred ccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCcc
Confidence 345889999998777999887654 6788866532 11123333321 1
Q ss_pred ----CCCCeeEECCCCCEEEEEecCC
Q 046018 197 ----GFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 197 ----~~p~~i~~d~~G~l~va~~~~~ 218 (310)
..||++++|+.|+|||++-...
T Consensus 496 ~~~f~~PDnl~fD~~GrLWi~TDg~~ 521 (616)
T COG3211 496 ANWFNSPDNLAFDPWGRLWIQTDGSG 521 (616)
T ss_pred cccccCCCceEECCCCCEEEEecCCC
Confidence 2399999999999999976554
No 214
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.83 E-value=1.4 Score=39.87 Aligned_cols=164 Identities=9% Similarity=0.018 Sum_probs=95.8
Q ss_pred ceeceEEEeCCCCcEEEEECCCce-EEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGF-QVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi-~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
...+-..+.++++.+++....+++ ..+|.+++.. ++ .. .+ ...+.+..++.|....++++.+.
T Consensus 111 apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~-~l-~~-htDYVR~g~~~~~~~hivvtGsY------------ 174 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QA-EL-SG-HTDYVRCGDISPANDHIVVTGSY------------ 174 (487)
T ss_pred CceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EE-Ee-cC-CcceeEeeccccCCCeEEEecCC------------
Confidence 344556678877788877776664 4558887764 22 22 11 22377888888765558888754
Q ss_pred hcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcceeeeeCCCCCCeeE
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQDVFAELPGFPDNVR 203 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~p~~i~ 203 (310)
+|.|-.||........+. +.......+.+-|.|. ++++ .+.+.|.+||+-++ +.. ....+-......++
T Consensus 175 -----Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs-~ias-AgGn~vkVWDl~~G~qll--~~~~~H~KtVTcL~ 245 (487)
T KOG0310|consen 175 -----DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS-LIAS-AGGNSVKVWDLTTGGQLL--TSMFNHNKTVTCLR 245 (487)
T ss_pred -----CceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-EEEE-cCCCeEEEEEecCCceeh--hhhhcccceEEEEE
Confidence 888999997554322222 2222335566667776 6655 56689999998732 110 00111111235677
Q ss_pred ECCCC-CEEEEEecCCccceeeeeecc-ccccEEeeccch
Q 046018 204 SNSNG-EFWVALHAKKGLFGKLILLNS-WLGKTLLKLPLS 241 (310)
Q Consensus 204 ~d~~G-~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~~~ 241 (310)
+..++ +|+-+..+++ +..|+ .+-+.+.....|
T Consensus 246 l~s~~~rLlS~sLD~~------VKVfd~t~~Kvv~s~~~~ 279 (487)
T KOG0310|consen 246 LASDSTRLLSGSLDRH------VKVFDTTNYKVVHSWKYP 279 (487)
T ss_pred eecCCceEeecccccc------eEEEEccceEEEEeeecc
Confidence 77776 5666666666 55565 344455555444
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.81 E-value=0.45 Score=44.80 Aligned_cols=125 Identities=11% Similarity=0.083 Sum_probs=78.5
Q ss_pred ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE-EEEecCCcccceEEEecCCCeEEEEe
Q 046018 92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV-TILLQGLAFANGVALSRDRTFILIAE 170 (310)
Q Consensus 92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~~~~~~~~~gi~~~~d~~~lyv~~ 170 (310)
.+.++++++.|||..+.++. ..+++.||+.+|.. +++.......+.++++.||+ ++.+.
T Consensus 12 ~hci~d~afkPDGsqL~lAA-------------------g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGk-rFASG 71 (1081)
T KOG1538|consen 12 EHCINDIAFKPDGTQLILAA-------------------GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGK-RFASG 71 (1081)
T ss_pred ccchheeEECCCCceEEEec-------------------CCEEEEEeCCCcccccccccccceEEEEEEccCCc-eeccC
Confidence 34789999999999777775 66899999987754 33332233468999999998 77776
Q ss_pred cCCceEEEEEccC-CCC--Cc-----------------------ceeeeeCC---------CCCCeeEECCCCCEEEEEe
Q 046018 171 TSNCRILRFWLHG-PNS--GK-----------------------QDVFAELP---------GFPDNVRSNSNGEFWVALH 215 (310)
Q Consensus 171 ~~~~~i~~~~~~~-~~~--~~-----------------------~~~~~~~~---------~~p~~i~~d~~G~l~va~~ 215 (310)
..+..|-+|++.- +.+ ++ ...+.... ..-.+-....||.+++-..
T Consensus 72 ~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 72 SADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred CCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEec
Confidence 6666666666541 100 00 00010000 0112346678998777666
Q ss_pred cCCccceeeeeeccccccEEeeccch
Q 046018 216 AKKGLFGKLILLNSWLGKTLLKLPLS 241 (310)
Q Consensus 216 ~~~~~~~~~i~~~~~~g~~~~~~~~~ 241 (310)
.++. |..-++.|+....+..|
T Consensus 152 ~nGT-----IsiRNk~gEek~~I~Rp 172 (1081)
T KOG1538|consen 152 FNGT-----ISIRNKNGEEKVKIERP 172 (1081)
T ss_pred cCce-----EEeecCCCCcceEEeCC
Confidence 6665 55567788776666554
No 216
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.81 E-value=0.94 Score=37.88 Aligned_cols=132 Identities=11% Similarity=0.017 Sum_probs=70.3
Q ss_pred CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY 137 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~ 137 (310)
+-.++++.+.+.+..+|+.++.+. . ...-+..+. ...+. =|+++.++= ..|.+|.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~-W-e~ilg~RiE-~sa~v---vgdfVV~GC------------------y~g~lYfl 78 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI-W-EAILGVRIE-CSAIV---VGDFVVLGC------------------YSGGLYFL 78 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE-e-ehhhCceee-eeeEE---ECCEEEEEE------------------ccCcEEEE
Confidence 335677766666788899998763 2 211111111 11122 133244433 36778888
Q ss_pred eCCCCe-EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCC-CCCeeEECC-CCCEEEE
Q 046018 138 EKTTKE-VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPG-FPDNVRSNS-NGEFWVA 213 (310)
Q Consensus 138 d~~~~~-~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~-~p~~i~~d~-~G~l~va 213 (310)
+.++|. ...+.....--..-..++++..+|. .+.++..|.+|+... .-++.. -+| .--+-++++ +|.||+|
T Consensus 79 ~~~tGs~~w~f~~~~~vk~~a~~d~~~glIyc-gshd~~~yalD~~~~----~cVykskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 79 CVKTGSQIWNFVILETVKVRAQCDFDGGLIYC-GSHDGNFYALDPKTY----GCVYKSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred EecchhheeeeeehhhhccceEEcCCCceEEE-ecCCCcEEEeccccc----ceEEecccCCceeccceecCCCceEEEE
Confidence 888773 2222111111122346788884554 477889999987642 112222 121 112335566 7889999
Q ss_pred EecCC
Q 046018 214 LHAKK 218 (310)
Q Consensus 214 ~~~~~ 218 (310)
...+.
T Consensus 154 ~t~G~ 158 (354)
T KOG4649|consen 154 ITAGA 158 (354)
T ss_pred eccce
Confidence 88876
No 217
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=95.80 E-value=0.54 Score=46.27 Aligned_cols=103 Identities=12% Similarity=0.116 Sum_probs=66.0
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecC
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETS 172 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~ 172 (310)
.+.+++.+|++. +.++-+. ++.|..||..+.+..... .....+.|++|+|-|+ -+.+.+.
T Consensus 131 DV~Dv~Wsp~~~-~lvS~s~-----------------DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsd 191 (942)
T KOG0973|consen 131 DVLDVNWSPDDS-LLVSVSL-----------------DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGK-YFASQSD 191 (942)
T ss_pred ccceeccCCCcc-EEEEecc-----------------cceEEEEccccceeeeeeecccccccceEECCccC-eeeeecC
Confidence 467888999998 7777643 788999998776443333 3345689999999998 3456677
Q ss_pred CceEEEEEccCCCCCc--ceeeeeCCCCC--CeeEECCCCCEEEEEe
Q 046018 173 NCRILRFWLHGPNSGK--QDVFAELPGFP--DNVRSNSNGEFWVALH 215 (310)
Q Consensus 173 ~~~i~~~~~~~~~~~~--~~~~~~~~~~p--~~i~~d~~G~l~va~~ 215 (310)
++.|-+|+...=...+ .+.+...++.+ ..+..+|||...++.+
T Consensus 192 Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 192 DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 7888888754200000 01122222222 3466789998777644
No 218
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.73 E-value=2 Score=41.12 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=78.7
Q ss_pred cceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
++...+..+-|.+..+.++...+.+..+|.....+--.... --..++.|+..||+. =+++.+.
T Consensus 412 ~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~A----HdgaIWsi~~~pD~~-g~vT~sa------------ 474 (888)
T KOG0306|consen 412 CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRA----HDGAIWSISLSPDNK-GFVTGSA------------ 474 (888)
T ss_pred cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhc----cccceeeeeecCCCC-ceEEecC------------
Confidence 34555666666333333443333366666654432111111 112578899999998 6666543
Q ss_pred hcCCCCceEEEEeCC-----CCeEEE-E-------ecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceee
Q 046018 126 LSGDKTGRLLKYEKT-----TKEVTI-L-------LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVF 192 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~-----~~~~~~-~-------~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~ 192 (310)
+..|..||.. .+.... + .+-....-.+.++||+++|.|+ --++++.+|-+++- ..+
T Consensus 475 -----DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVs-LLdnTVkVyflDtl-----KFf 543 (888)
T KOG0306|consen 475 -----DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVS-LLDNTVKVYFLDTL-----KFF 543 (888)
T ss_pred -----CcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEE-eccCeEEEEEecce-----eee
Confidence 4445554421 011101 1 1111224578999999977666 55678888877742 223
Q ss_pred eeCCC--CC-CeeEECCCCCEEEEEecCCc
Q 046018 193 AELPG--FP-DNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 193 ~~~~~--~p-~~i~~d~~G~l~va~~~~~~ 219 (310)
..+-| .| -.|-+++|+.+.++......
T Consensus 544 lsLYGHkLPV~smDIS~DSklivTgSADKn 573 (888)
T KOG0306|consen 544 LSLYGHKLPVLSMDISPDSKLIVTGSADKN 573 (888)
T ss_pred eeecccccceeEEeccCCcCeEEeccCCCc
Confidence 33221 23 56777888888887665543
No 219
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=95.69 E-value=1.1 Score=37.67 Aligned_cols=149 Identities=10% Similarity=0.088 Sum_probs=90.9
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCC-C--eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEG-G--LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~-~--~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~ 122 (310)
++...++++|..|.++....... |..++..+ . ..+.+.+ +.-...++.+|..|.|+ +.++.+-
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld---~~hkrsVRsvAwsp~g~-~La~aSF--------- 81 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD---DGHKRSVRSVAWSPHGR-YLASASF--------- 81 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc---ccchheeeeeeecCCCc-EEEEeec---------
Confidence 46778999984477776666544 55555542 1 2222222 12224688999999999 5555432
Q ss_pred hhhhcCCCCceEEEEeCCCCeEEEEec--CC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC--
Q 046018 123 SSILSGDKTGRLLKYEKTTKEVTILLQ--GL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG-- 197 (310)
Q Consensus 123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-- 197 (310)
+..+..|-...++++.+.. +. ....+++++++|++ +.+-+....||++..++. .+.+..+-+..
T Consensus 82 --------D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~ded--dEfec~aVL~~Ht 150 (312)
T KOG0645|consen 82 --------DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDED--DEFECIAVLQEHT 150 (312)
T ss_pred --------cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCC--CcEEEEeeecccc
Confidence 6677777776677776442 22 23568999999994 445577899999988743 23343333221
Q ss_pred -CCCeeEECCCCCEEEEEecCCc
Q 046018 198 -FPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 198 -~p~~i~~d~~G~l~va~~~~~~ 219 (310)
-.-.+..-|.-.|.++....+.
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnT 173 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNT 173 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCe
Confidence 1245667776566666555554
No 220
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.62 E-value=0.7 Score=43.27 Aligned_cols=182 Identities=13% Similarity=0.133 Sum_probs=98.7
Q ss_pred ccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEE
Q 046018 4 TGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQ 82 (310)
Q Consensus 4 ~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~ 82 (310)
++.-++.|..||.... ....+...|..+.+ ............+|..+ .|.++|+....+ |..+|+++.+-
T Consensus 135 SgGLD~~IflWDin~~-----~~~l~~s~n~~t~~-sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~k-- 205 (735)
T KOG0308|consen 135 SGGLDRKIFLWDINTG-----TATLVASFNNVTVN-SLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKK-- 205 (735)
T ss_pred ecCCCccEEEEEccCc-----chhhhhhccccccc-cCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccc--
Confidence 3556778888988653 12233334332211 00001112344677766 787888766554 77779998752
Q ss_pred EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEec
Q 046018 83 LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSR 161 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~ 161 (310)
+.+. .+ -...+..+.+++||+++.-+. . +|.|-.||..-.++.. +.......-.+..+|
T Consensus 206 imkL-rG-HTdNVr~ll~~dDGt~~ls~s-S-----------------DgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 206 IMKL-RG-HTDNVRVLLVNDDGTRLLSAS-S-----------------DGTIRLWDLGQQRCLATYIVHKEGVWALQSSP 265 (735)
T ss_pred eeee-ec-cccceEEEEEcCCCCeEeecC-C-----------------CceEEeeeccccceeeeEEeccCceEEEeeCC
Confidence 2221 11 112577899999999565444 2 7888888874333221 111111234556667
Q ss_pred CCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC-CeeEEC-CCCCEEEEEecCC
Q 046018 162 DRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP-DNVRSN-SNGEFWVALHAKK 218 (310)
Q Consensus 162 d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d-~~G~l~va~~~~~ 218 (310)
+-..+|..+ ..+.|++=|+... .+...+... ..| ..+... .+..+|++++.+.
T Consensus 266 sf~~vYsG~-rd~~i~~Tdl~n~--~~~tlick~-daPv~~l~~~~~~~~~WvtTtds~ 320 (735)
T KOG0308|consen 266 SFTHVYSGG-RDGNIYRTDLRNP--AKSTLICKE-DAPVLKLHLHEHDNSVWVTTTDSS 320 (735)
T ss_pred CcceEEecC-CCCcEEecccCCc--hhheEeecC-CCchhhhhhccccCCceeeecccc
Confidence 777677664 5678888887643 122222221 112 223333 2344799998876
No 221
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.60 E-value=1.7 Score=39.28 Aligned_cols=82 Identities=10% Similarity=0.011 Sum_probs=55.4
Q ss_pred CceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC--CCCCCeeEECCC
Q 046018 131 TGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL--PGFPDNVRSNSN 207 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~p~~i~~d~~ 207 (310)
++.|..||.+.+.......+.. ....++++|++++| .+.+..++|..++.... ..+... .+....+++..+
T Consensus 431 dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl-AsGs~dg~V~iws~~~~-----~l~~s~~~~~~Ifel~Wn~~ 504 (524)
T KOG0273|consen 431 DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL-ASGSLDGCVHIWSTKTG-----KLVKSYQGTGGIFELCWNAA 504 (524)
T ss_pred CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEE-EecCCCCeeEeccccch-----heeEeecCCCeEEEEEEcCC
Confidence 7789999998776544333333 34789999999844 45567789999986532 233332 233466888999
Q ss_pred CCEEEEEecCC
Q 046018 208 GEFWVALHAKK 218 (310)
Q Consensus 208 G~l~va~~~~~ 218 (310)
|+...+....+
T Consensus 505 G~kl~~~~sd~ 515 (524)
T KOG0273|consen 505 GDKLGACASDG 515 (524)
T ss_pred CCEEEEEecCC
Confidence 98877776655
No 222
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=95.59 E-value=1 Score=36.72 Aligned_cols=66 Identities=9% Similarity=-0.047 Sum_probs=37.5
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEE-------eCCCCeEEEEE----eecCCc-cccCCcceEEeCCCCEEEEEeCCC
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVV-------GPEGGLATQLV----TEAAGQ-PLRFTNDLDIDEHKGVIYFTDSST 114 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~-------d~~~~~~~~~~----~~~~~~-~~~~~~~i~~d~~g~~l~v~~~~~ 114 (310)
.....+++.| .|.||.+......+|+ +++.+...... ..-... -...+...+.+|.|. |..+.+..
T Consensus 33 qairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge-liatgsnd 110 (350)
T KOG0641|consen 33 QAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE-LIATGSND 110 (350)
T ss_pred hheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC-eEEecCCC
Confidence 4566899999 9999999887655544 33222110000 000000 112466778888998 77776553
No 223
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.52 E-value=1.4 Score=37.68 Aligned_cols=133 Identities=13% Similarity=0.132 Sum_probs=76.9
Q ss_pred CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY 137 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~ 137 (310)
+..+|+++...|+..+|..+-.-.+...... . ..+..++.+ .|+++|+++. +..++.+
T Consensus 96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t-~gyaygv~v--sGn~aYVadl------------------ddgfLiv 153 (370)
T COG5276 96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLN-T-DGYAYGVYV--SGNYAYVADL------------------DDGFLIV 153 (370)
T ss_pred ccEEEEEcCCCceEEEeccCCCCcceecccc-C-CceEEEEEe--cCCEEEEeec------------------cCcEEEE
Confidence 5689999988898888876543222211110 0 023344444 5778999983 3457778
Q ss_pred eCCCCeEEEEecCCccc----ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee--CCCCCCeeEECCCCCEE
Q 046018 138 EKTTKEVTILLQGLAFA----NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE--LPGFPDNVRSNSNGEFW 211 (310)
Q Consensus 138 d~~~~~~~~~~~~~~~~----~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~G~l~ 211 (310)
|..+-+-..+......| ..++++ |++.|++ ..++.+.+.|.... .+...... ..+...++.+. +.+.|
T Consensus 154 dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA-~~d~GL~ivDVSnp--~sPvli~~~n~g~g~~sv~vs-dnr~y 227 (370)
T COG5276 154 DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVA-WRDGGLTIVDVSNP--HSPVLIGSYNTGPGTYSVSVS-DNRAY 227 (370)
T ss_pred ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEE-EeCCCeEEEEccCC--CCCeEEEEEecCCceEEEEec-CCeeE
Confidence 76654333333333223 456666 5678998 56688999998743 22222222 22234555553 46688
Q ss_pred EEEecCC
Q 046018 212 VALHAKK 218 (310)
Q Consensus 212 va~~~~~ 218 (310)
++....+
T Consensus 228 ~vvy~eg 234 (370)
T COG5276 228 LVVYDEG 234 (370)
T ss_pred EEEcccc
Confidence 8887766
No 224
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.52 E-value=2.3 Score=40.22 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=46.5
Q ss_pred CCceEEEEeCCCCeEEEEecCCcc-cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCC--CCCeeEEC
Q 046018 130 KTGRLLKYEKTTKEVTILLQGLAF-ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPG--FPDNVRSN 205 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~~~~~-~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~--~p~~i~~d 205 (310)
..|.|..+|+.+|+..-....... ..+. +.-.+. |++..+.++.++.||.++++. ++.. +++ ...=|.+.
T Consensus 439 ~~g~l~AiD~~tGk~~W~~~~~~p~~~~~-l~t~g~-lvf~g~~~G~l~a~D~~TGe~----lw~~~~g~~~~a~P~ty~ 512 (527)
T TIGR03075 439 HMGSLIAWDPITGKIVWEHKEDFPLWGGV-LATAGD-LVFYGTLEGYFKAFDAKTGEE----LWKFKTGSGIVGPPVTYE 512 (527)
T ss_pred CceeEEEEeCCCCceeeEecCCCCCCCcc-eEECCc-EEEEECCCCeEEEEECCCCCE----eEEEeCCCCceecCEEEE
Confidence 367899999999977653322111 1232 223445 444456778999999875422 2221 221 11224444
Q ss_pred CCCCEEEEEecC
Q 046018 206 SNGEFWVALHAK 217 (310)
Q Consensus 206 ~~G~l~va~~~~ 217 (310)
.+|++||+...+
T Consensus 513 ~~G~qYv~~~~G 524 (527)
T TIGR03075 513 QDGKQYVAVLSG 524 (527)
T ss_pred eCCEEEEEEEec
Confidence 579999886543
No 225
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.50 E-value=0.59 Score=41.91 Aligned_cols=107 Identities=13% Similarity=0.176 Sum_probs=63.6
Q ss_pred EeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce
Q 046018 54 FDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR 133 (310)
Q Consensus 54 ~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~ 133 (310)
... +|++|+......|+.+|++++... ....... .....+.-....+|+ +|+++. .+.
T Consensus 65 ~~~-dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~-~~~~~~~~~~~~~G~-i~~g~~------------------~g~ 122 (370)
T COG1520 65 ADG-DGTVYVGTRDGNIFALNPDTGLVK-WSYPLLG-AVAQLSGPILGSDGK-IYVGSW------------------DGK 122 (370)
T ss_pred Eee-CCeEEEecCCCcEEEEeCCCCcEE-ecccCcC-cceeccCceEEeCCe-EEEecc------------------cce
Confidence 555 889999966656999999998742 2111111 011233333444898 999983 557
Q ss_pred EEEEeCCCCeEEEEecCCc--ccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 134 LLKYEKTTKEVTILLQGLA--FANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 134 v~~~d~~~~~~~~~~~~~~--~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
++.+|..+|+......... .-.+-++-.|+. +|+.. .++.++.++.+.+
T Consensus 123 ~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~-v~~~s-~~g~~~al~~~tG 173 (370)
T COG1520 123 LYALDASTGTLVWSRNVGGSPYYASPPVVGDGT-VYVGT-DDGHLYALNADTG 173 (370)
T ss_pred EEEEECCCCcEEEEEecCCCeEEecCcEEcCcE-EEEec-CCCeEEEEEccCC
Confidence 9999997777665433222 011122333554 66653 6688888887743
No 226
>KOG4328 consensus WD40 protein [Function unknown]
Probab=95.49 E-value=1.8 Score=38.92 Aligned_cols=149 Identities=15% Similarity=0.196 Sum_probs=76.8
Q ss_pred eceEEEeCCC-CcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 49 PLGIRFDKKT-GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 49 p~gl~~d~~~-g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
..+|.+.+-+ ..+|.+...+-|...|.+++....+...... .....++.+..+...+++++.
T Consensus 237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d--~~~fs~~d~~~e~~~vl~~~~--------------- 299 (498)
T KOG4328|consen 237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTD--NIWFSSLDFSAESRSVLFGDN--------------- 299 (498)
T ss_pred ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCcc--ceeeeeccccCCCccEEEeec---------------
Confidence 4578887622 2566665544366668777655433322100 011223334333332555542
Q ss_pred CCCCceEEEEeCCCCe--EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcce-eeeeCC--CCCCee
Q 046018 128 GDKTGRLLKYEKTTKE--VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQD-VFAELP--GFPDNV 202 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~--~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~-~~~~~~--~~p~~i 202 (310)
-|..-.||..++. ...+.-......++++.|-..+++++.+..+.+-+||+..-. ++.. .+..++ ......
T Consensus 300 ---~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~-~K~sp~lst~~HrrsV~sA 375 (498)
T KOG4328|consen 300 ---VGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR-GKASPFLSTLPHRRSVNSA 375 (498)
T ss_pred ---ccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc-CCCCcceecccccceeeee
Confidence 3344455543332 222211123578999999877777877777888899986311 1111 233332 234678
Q ss_pred EECCCC-CEEEEEecCC
Q 046018 203 RSNSNG-EFWVALHAKK 218 (310)
Q Consensus 203 ~~d~~G-~l~va~~~~~ 218 (310)
+++|.| +|...+..+.
T Consensus 376 yFSPs~gtl~TT~~D~~ 392 (498)
T KOG4328|consen 376 YFSPSGGTLLTTCQDNE 392 (498)
T ss_pred EEcCCCCceEeeccCCc
Confidence 888886 5444444433
No 227
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.44 E-value=1.1 Score=39.18 Aligned_cols=145 Identities=12% Similarity=0.143 Sum_probs=79.0
Q ss_pred eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcc-eEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTND-LDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~-i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
.+.+.. .+|.|.-... |+..|.++.++-+.+... +- .+.+ +|.+++..--|++-.. ..
T Consensus 92 ~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~---~~-n~~gl~AlS~n~~n~ylAyp~--------------s~ 150 (391)
T KOG2110|consen 92 AVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETT---PP-NPKGLCALSPNNANCYLAYPG--------------ST 150 (391)
T ss_pred EEEEcc--ceEEEEEccc-EEEEecccceeehhhhcc---CC-CccceEeeccCCCCceEEecC--------------CC
Confidence 444443 5676664443 888898887654332221 11 2332 3344332114544322 12
Q ss_pred CCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCce-EEEEEccCCCCCcceeeee--CCCCCCeeEEC
Q 046018 130 KTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCR-ILRFWLHGPNSGKQDVFAE--LPGFPDNVRSN 205 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~-i~~~~~~~~~~~~~~~~~~--~~~~p~~i~~d 205 (310)
..|.|+.||..+-+.....+... .-..++|++||. ++.+.+..++ |.+|....++ ....|.. .+-....++|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~-llATASeKGTVIRVf~v~~G~--kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGT-LLATASEKGTVIRVFSVPEGQ--KLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCCceeEEEECCCCC-EEEEeccCceEEEEEEcCCcc--EeeeeeCCceeeEEEEEEEC
Confidence 37889999987644433333333 347899999998 6666666665 4455544221 1122221 12234678999
Q ss_pred CCCCEEEEEecCCc
Q 046018 206 SNGEFWVALHAKKG 219 (310)
Q Consensus 206 ~~G~l~va~~~~~~ 219 (310)
+++.+..+..+...
T Consensus 228 ~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 228 PDSQFLAASSNTET 241 (391)
T ss_pred CCCCeEEEecCCCe
Confidence 99997777666554
No 228
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.38 E-value=1.9 Score=38.60 Aligned_cols=103 Identities=11% Similarity=0.164 Sum_probs=59.5
Q ss_pred CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY 137 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~ 137 (310)
+|+||+++....++.+|.+++... ......+ . .....-++-.++. +|+.+ .++.++.+
T Consensus 111 ~G~i~~g~~~g~~y~ld~~~G~~~-W~~~~~~-~-~~~~~~~v~~~~~-v~~~s------------------~~g~~~al 168 (370)
T COG1520 111 DGKIYVGSWDGKLYALDASTGTLV-WSRNVGG-S-PYYASPPVVGDGT-VYVGT------------------DDGHLYAL 168 (370)
T ss_pred CCeEEEecccceEEEEECCCCcEE-EEEecCC-C-eEEecCcEEcCcE-EEEec------------------CCCeEEEE
Confidence 688999988766999999767643 2222112 0 0111223445676 88874 16789999
Q ss_pred eCCCCeEEEEecC-----CcccceEEEecCCCeEEEEecC-CceEEEEEccCC
Q 046018 138 EKTTKEVTILLQG-----LAFANGVALSRDRTFILIAETS-NCRILRFWLHGP 184 (310)
Q Consensus 138 d~~~~~~~~~~~~-----~~~~~gi~~~~d~~~lyv~~~~-~~~i~~~~~~~~ 184 (310)
|.++|+....... .......+ ..++. +|+.... +..++.+++..+
T Consensus 169 ~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~-vy~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 169 NADTGTLKWTYETPAPLSLSIYGSPA-IASGT-VYVGSDGYDGILYALNAEDG 219 (370)
T ss_pred EccCCcEEEEEecCCccccccccCce-eecce-EEEecCCCcceEEEEEccCC
Confidence 9988866432111 11112222 33454 7887443 457999998543
No 229
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=95.38 E-value=0.99 Score=42.59 Aligned_cols=138 Identities=9% Similarity=0.073 Sum_probs=79.2
Q ss_pred eceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018 49 PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG 128 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~ 128 (310)
...++.-+ ++ .|++...+...++-..+..++.+ . + -....+++++-+++. +.-+.
T Consensus 143 VWAv~~l~-e~-~~vTgsaDKtIklWk~~~~l~tf-~---g-HtD~VRgL~vl~~~~-flScs----------------- 197 (745)
T KOG0301|consen 143 VWAVASLP-EN-TYVTGSADKTIKLWKGGTLLKTF-S---G-HTDCVRGLAVLDDSH-FLSCS----------------- 197 (745)
T ss_pred eeeeeecC-CC-cEEeccCcceeeeccCCchhhhh-c---c-chhheeeeEEecCCC-eEeec-----------------
Confidence 34566656 54 67776665544443333333322 1 1 223688999999988 44333
Q ss_pred CCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC-CCCeeEECCC
Q 046018 129 DKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG-FPDNVRSNSN 207 (310)
Q Consensus 129 ~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~p~~i~~d~~ 207 (310)
.+|-|.+|+.+++........-..-..|....+++ ++++...++.+..|+.+ .......+|. ......+=++
T Consensus 198 -NDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~-~Ivs~gEDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~N 270 (745)
T KOG0301|consen 198 -NDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDG-LIVSTGEDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLN 270 (745)
T ss_pred -CCceEEEEeccCceeeeeeccceEEEEEEecCCCC-eEEEecCCceEEEeecC-----ceEEEEecCccceEEEEEeeC
Confidence 27889999986554444333233345666555655 77776666777777643 2222223443 3345555567
Q ss_pred CCEEEEEecCC
Q 046018 208 GEFWVALHAKK 218 (310)
Q Consensus 208 G~l~va~~~~~ 218 (310)
|.|+++..++.
T Consensus 271 gDIvvg~SDG~ 281 (745)
T KOG0301|consen 271 GDIVVGGSDGR 281 (745)
T ss_pred CCEEEeccCce
Confidence 77877777665
No 230
>PRK13684 Ycf48-like protein; Provisional
Probab=95.37 E-value=1.8 Score=38.23 Aligned_cols=99 Identities=12% Similarity=0.062 Sum_probs=51.3
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE-eCCCCeEEEEecC-CcccceEEEecCCCeEEEEec
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY-EKTTKEVTILLQG-LAFANGVALSRDRTFILIAET 171 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~-d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~ 171 (310)
..+++++++++. +++.. ..|.+++- +.....++.+... ....+++++.++++ +|++..
T Consensus 174 ~~~~i~~~~~g~-~v~~g------------------~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg~ 233 (334)
T PRK13684 174 VVRNLRRSPDGK-YVAVS------------------SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLAR 233 (334)
T ss_pred eEEEEEECCCCe-EEEEe------------------CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEec
Confidence 456777778776 44443 14556654 2222245544322 23457888888887 666533
Q ss_pred CCceEEEE-EccCCCCCcceeeeeCC-----CCCCeeEECCCCCEEEEEecC
Q 046018 172 SNCRILRF-WLHGPNSGKQDVFAELP-----GFPDNVRSNSNGEFWVALHAK 217 (310)
Q Consensus 172 ~~~~i~~~-~~~~~~~~~~~~~~~~~-----~~p~~i~~d~~G~l~va~~~~ 217 (310)
. + ..++ ..+++.. .+.. ..| .....+++.+++.+|++...+
T Consensus 234 ~-G-~~~~~s~d~G~s--W~~~-~~~~~~~~~~l~~v~~~~~~~~~~~G~~G 280 (334)
T PRK13684 234 G-G-QIRFNDPDDLES--WSKP-IIPEITNGYGYLDLAYRTPGEIWAGGGNG 280 (334)
T ss_pred C-C-EEEEccCCCCCc--cccc-cCCccccccceeeEEEcCCCCEEEEcCCC
Confidence 2 3 3344 2343311 1111 011 112456777788888876554
No 231
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=95.36 E-value=0.26 Score=43.75 Aligned_cols=114 Identities=11% Similarity=0.037 Sum_probs=72.1
Q ss_pred eeceEEEeCCCCcEEEEECCCc-eEEEeCCCC--eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 48 RPLGIRFDKKTGDLYIADAYLG-FQVVGPEGG--LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~--~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
....+++.+....||.+...++ +..+|.++. +..+.... -....+.+++.|-+..+..+.+
T Consensus 229 ~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a----h~~~vn~~~fnp~~~~ilAT~S------------ 292 (422)
T KOG0264|consen 229 VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA----HSAEVNCVAFNPFNEFILATGS------------ 292 (422)
T ss_pred ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc----cCCceeEEEeCCCCCceEEecc------------
Confidence 3446666665556776666554 667787742 22222111 1234788999998874555543
Q ss_pred hhcCCCCceEEEEeCCCCeE--EEEecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 125 ILSGDKTGRLLKYEKTTKEV--TILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~--~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
.+++|..||+..=.. ..+..-......+.|+|+...++.+....+++.+||..
T Consensus 293 -----~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 293 -----ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred -----CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 378899999753111 11111122346899999998899888888999999986
No 232
>PHA02790 Kelch-like protein; Provisional
Probab=95.34 E-value=1.8 Score=40.42 Aligned_cols=130 Identities=6% Similarity=-0.037 Sum_probs=71.4
Q ss_pred CCcEEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceE
Q 046018 58 TGDLYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRL 134 (310)
Q Consensus 58 ~g~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v 134 (310)
+|.||+.... ..+.++|+.+++...+... +.......++.-+|+ ||+..... .....+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l----~~~r~~~~~~~~~g~-IYviGG~~--------------~~~~~v 378 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL----LKPRCNPAVASINNV-IYVIGGHS--------------ETDTTT 378 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCC----CCCCcccEEEEECCE-EEEecCcC--------------CCCccE
Confidence 6799998654 2378888887765543221 111222333445677 99875321 012357
Q ss_pred EEEeCCCCeEEEEecCCccc--ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC--CCCCeeEECCCCCE
Q 046018 135 LKYEKTTKEVTILLQGLAFA--NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP--GFPDNVRSNSNGEF 210 (310)
Q Consensus 135 ~~~d~~~~~~~~~~~~~~~~--~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~p~~i~~d~~G~l 210 (310)
.+|||++.+++.... ...| ..-+..-+++ ||+.. +.+.+||++.. ......+++ ..-.++++ -+|.|
T Consensus 379 e~ydp~~~~W~~~~~-m~~~r~~~~~~~~~~~-IYv~G---G~~e~ydp~~~---~W~~~~~m~~~r~~~~~~v-~~~~I 449 (480)
T PHA02790 379 EYLLPNHDQWQFGPS-TYYPHYKSCALVFGRR-LFLVG---RNAEFYCESSN---TWTLIDDPIYPRDNPELII-VDNKL 449 (480)
T ss_pred EEEeCCCCEEEeCCC-CCCccccceEEEECCE-EEEEC---CceEEecCCCC---cEeEcCCCCCCccccEEEE-ECCEE
Confidence 889999888886532 2222 2222233554 99874 45778887632 333333322 22233444 35788
Q ss_pred EEEEe
Q 046018 211 WVALH 215 (310)
Q Consensus 211 ~va~~ 215 (310)
|+...
T Consensus 450 YviGG 454 (480)
T PHA02790 450 LLIGG 454 (480)
T ss_pred EEECC
Confidence 88653
No 233
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=95.32 E-value=1.9 Score=38.14 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=52.6
Q ss_pred CCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCC
Q 046018 130 KTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGE 209 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 209 (310)
.+..|..||..+|+...-..-......+.|+.||. ++++.....+|.++|+..+..-. +........|....+-.+|.
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~-e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVS-EGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred CCceEEEEeccCCceeeecCCCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEee-ecccccCCCcceeEEeccCc
Confidence 36789999999887665433223346788999998 77777889999999987542110 00111112344455556777
Q ss_pred EEEEEe
Q 046018 210 FWVALH 215 (310)
Q Consensus 210 l~va~~ 215 (310)
|..+.+
T Consensus 230 i~tTGf 235 (472)
T KOG0303|consen 230 IFTTGF 235 (472)
T ss_pred eeeecc
Confidence 655443
No 234
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.26 E-value=1.5 Score=36.70 Aligned_cols=70 Identities=17% Similarity=0.094 Sum_probs=45.4
Q ss_pred EeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCc
Q 046018 54 FDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTG 132 (310)
Q Consensus 54 ~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g 132 (310)
.|.+.|-+|.+.+.+..+.+|+.+.....-.+. .+. ...+-++++ ++. ||++. ..|
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskc-gG~---~f~sP~i~~g~~s-ly~a~------------------t~G 157 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-GGG---TFVSPVIAPGDGS-LYAAI------------------TAG 157 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEeccc-CCc---eeccceecCCCce-EEEEe------------------ccc
Confidence 455467889998887899999987654322222 111 122335566 777 99998 367
Q ss_pred eEEEEeCCCCeEEE
Q 046018 133 RLLKYEKTTKEVTI 146 (310)
Q Consensus 133 ~v~~~d~~~~~~~~ 146 (310)
.|++.++.+.....
T Consensus 158 ~vlavt~~~~~~~~ 171 (354)
T KOG4649|consen 158 AVLAVTKNPYSSTE 171 (354)
T ss_pred eEEEEccCCCCcce
Confidence 89999887765444
No 235
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.21 E-value=3 Score=39.80 Aligned_cols=144 Identities=14% Similarity=0.072 Sum_probs=80.5
Q ss_pred eceEEEeCCCCcEEEEECCC-c------eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018 49 PLGIRFDKKTGDLYIADAYL-G------FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF 121 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~~-g------i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~ 121 (310)
..++++- +|.||++.... | +.++|+.+++.+.++.- ...+...-...-+|. ||+..-...+
T Consensus 325 ~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M----~~~R~~~~v~~l~g~-iYavGG~dg~----- 392 (571)
T KOG4441|consen 325 RVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPM----NTKRSDFGVAVLDGK-LYAVGGFDGE----- 392 (571)
T ss_pred cccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCc----cCccccceeEEECCE-EEEEeccccc-----
Confidence 3466665 47999987654 3 78889998876543221 111222122233666 8887643211
Q ss_pred hhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC------CceEEEEEccCCCCCcceeeeeC
Q 046018 122 MSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS------NCRILRFWLHGPNSGKQDVFAEL 195 (310)
Q Consensus 122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~------~~~i~~~~~~~~~~~~~~~~~~~ 195 (310)
..-..+-+||+.+.+++.+..-...-.+.+...-++.||++.-. -+.+.+||+.+. ........
T Consensus 393 -------~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~---~W~~~~~M 462 (571)
T KOG4441|consen 393 -------KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN---TWTLIAPM 462 (571)
T ss_pred -------cccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC---ceeecCCc
Confidence 12336889999999888765433333333333333459987541 257888988743 23333332
Q ss_pred C--CCCCeeEECCCCCEEEEEe
Q 046018 196 P--GFPDNVRSNSNGEFWVALH 215 (310)
Q Consensus 196 ~--~~p~~i~~d~~G~l~va~~ 215 (310)
+ ..-.++++- +|.||+...
T Consensus 463 ~~~R~~~g~a~~-~~~iYvvGG 483 (571)
T KOG4441|consen 463 NTRRSGFGVAVL-NGKIYVVGG 483 (571)
T ss_pred ccccccceEEEE-CCEEEEECC
Confidence 1 222345553 577887643
No 236
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=1.4 Score=35.77 Aligned_cols=108 Identities=14% Similarity=0.139 Sum_probs=65.8
Q ss_pred ceEEEeCCCCcEEEEECCC---ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 50 LGIRFDKKTGDLYIADAYL---GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 50 ~gl~~d~~~g~l~v~~~~~---gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
.||..+. |.++.++..- .|.+.|.++++.. +..... ++..+..+++...+ ++|.-+..
T Consensus 49 QGL~~~~--g~i~esTG~yg~S~ir~~~L~~gq~~-~s~~l~-~~~~FgEGit~~gd--~~y~LTw~------------- 109 (262)
T COG3823 49 QGLEYLD--GHILESTGLYGFSKIRVSDLTTGQEI-FSEKLA-PDTVFGEGITKLGD--YFYQLTWK------------- 109 (262)
T ss_pred cceeeeC--CEEEEeccccccceeEEEeccCceEE-EEeecC-Cccccccceeeccc--eEEEEEec-------------
Confidence 4888874 6888887652 3899999988753 222211 12334556665444 58888843
Q ss_pred cCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 127 SGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
.|--+.||+++ ++.+..-.-...|=.+..|++.|+.+ .++..++--||.+
T Consensus 110 ----egvaf~~d~~t--~~~lg~~~y~GeGWgLt~d~~~Lims-dGsatL~frdP~t 159 (262)
T COG3823 110 ----EGVAFKYDADT--LEELGRFSYEGEGWGLTSDDKNLIMS-DGSATLQFRDPKT 159 (262)
T ss_pred ----cceeEEEChHH--hhhhcccccCCcceeeecCCcceEee-CCceEEEecCHHH
Confidence 67778898864 33322111123566666777777776 4666777767653
No 237
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.20 E-value=2.5 Score=40.29 Aligned_cols=189 Identities=10% Similarity=0.015 Sum_probs=93.4
Q ss_pred cceeceEEEeCCCCc-EEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 46 CGRPLGIRFDKKTGD-LYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~-l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
.+-...+.+.+...+ |.++....+ +..+|..+... -+ .... .-.....++++.+|+. -.++...
T Consensus 147 gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl-~~~~-~H~S~vtsL~~~~d~~-~~ls~~R---------- 212 (775)
T KOG0319|consen 147 GGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CL-HTMI-LHKSAVTSLAFSEDSL-ELLSVGR---------- 212 (775)
T ss_pred CceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HH-HHHH-hhhhheeeeeeccCCc-eEEEecc----------
Confidence 345556777774333 223333334 67777775432 01 0000 1123567888888887 4444422
Q ss_pred hhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecC-----CCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC
Q 046018 124 SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRD-----RTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF 198 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d-----~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (310)
+..+..||...-+.....+....-.+.++-++ +. .+++-...+.+..++..+.+....+...+.+..
T Consensus 213 -------Dkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~-~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~ 284 (775)
T KOG0319|consen 213 -------DKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGE-YIITAGGSGVVQYWDSESGKCVYKQRQSDSEEI 284 (775)
T ss_pred -------CcEEEEeehhhhhhhheechhhheeeEEEechhcCCcce-EEEEecCCceEEEEecccchhhhhhccCCchhh
Confidence 45577888743222223333334455556554 33 333445667777777765422211111111122
Q ss_pred CCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeec-cchhhhhcccccCCCCceEEEEEC
Q 046018 199 PDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKL-PLSFRQLHSLLVGGKPHATAIKLS 262 (310)
Q Consensus 199 p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d 262 (310)
.+.+..-..+.+...+.... +..+. ...+....+ ....+-..++..|..+..+.++-+
T Consensus 285 ~~~~~~~~~~~~l~vtaeQn------l~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN 344 (775)
T KOG0319|consen 285 DHLLAIESMSQLLLVTAEQN------LFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN 344 (775)
T ss_pred hcceeccccCceEEEEccce------EEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC
Confidence 34455555566666666555 44443 334444333 333444556666666666666654
No 238
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=95.07 E-value=1.9 Score=36.79 Aligned_cols=105 Identities=10% Similarity=0.102 Sum_probs=65.9
Q ss_pred eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018 51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK 130 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~ 130 (310)
..++.+ +..+|+++..+.|.++|.+++...++... +. ....|...+.-. ..|+.+.
T Consensus 59 ~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~igth--~~---~i~ci~~~~~~~-~vIsgsW----------------- 114 (323)
T KOG1036|consen 59 DCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQIGTH--DE---GIRCIEYSYEVG-CVISGSW----------------- 114 (323)
T ss_pred eeeccC-CceEEEeccCceEEEEEecCCcceeeccC--CC---ceEEEEeeccCC-eEEEccc-----------------
Confidence 566666 77899998888899999998876555332 11 244566555555 5666532
Q ss_pred CceEEEEeCCCCeEEEEecCCcccc-eEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 131 TGRLLKYEKTTKEVTILLQGLAFAN-GVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~~~~-gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
+..|-.||+-. +... .....++ --+++-.+.+|+|+ +.+.++..||+..
T Consensus 115 D~~ik~wD~R~-~~~~--~~~d~~kkVy~~~v~g~~LvVg-~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 115 DKTIKFWDPRN-KVVV--GTFDQGKKVYCMDVSGNRLVVG-TSDRKVLIYDLRN 164 (323)
T ss_pred CccEEEEeccc-cccc--cccccCceEEEEeccCCEEEEe-ecCceEEEEEccc
Confidence 77899999853 1211 1122222 23445556667775 6678999999864
No 239
>PRK13684 Ycf48-like protein; Provisional
Probab=95.02 E-value=2.3 Score=37.55 Aligned_cols=142 Identities=11% Similarity=0.030 Sum_probs=70.6
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCC-eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGG-LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~-~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
+...++++++ ++.++++...+.+++...+++ ..+.+ .. .....++++++.++++ +|+...
T Consensus 173 g~~~~i~~~~-~g~~v~~g~~G~i~~s~~~gg~tW~~~-~~---~~~~~l~~i~~~~~g~-~~~vg~------------- 233 (334)
T PRK13684 173 GVVRNLRRSP-DGKYVAVSSRGNFYSTWEPGQTAWTPH-QR---NSSRRLQSMGFQPDGN-LWMLAR------------- 233 (334)
T ss_pred ceEEEEEECC-CCeEEEEeCCceEEEEcCCCCCeEEEe-eC---CCcccceeeeEcCCCC-EEEEec-------------
Confidence 4566788887 666555544433555422332 34333 11 2234678899999998 887752
Q ss_pred hcCCCCceEEEE-eCCCC-eEEEEecC-C---cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC
Q 046018 126 LSGDKTGRLLKY-EKTTK-EVTILLQG-L---AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP 199 (310)
Q Consensus 126 ~~~~~~g~v~~~-d~~~~-~~~~~~~~-~---~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p 199 (310)
.| ..++ ..+.| .++.+... . .....+++.+++. +|++. ..+.|+. ..+++.. .+......+.|
T Consensus 234 -----~G-~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G-~~G~v~~-S~d~G~t--W~~~~~~~~~~ 302 (334)
T PRK13684 234 -----GG-QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGG-GNGTLLV-SKDGGKT--WEKDPVGEEVP 302 (334)
T ss_pred -----CC-EEEEccCCCCCccccccCCccccccceeeEEEcCCCC-EEEEc-CCCeEEE-eCCCCCC--CeECCcCCCCC
Confidence 33 3334 23333 33322211 1 1234677777766 77763 3455554 3443321 12111111122
Q ss_pred ---CeeEECCCCCEEEEEecCC
Q 046018 200 ---DNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 200 ---~~i~~d~~G~l~va~~~~~ 218 (310)
..+.+..++..|++...+.
T Consensus 303 ~~~~~~~~~~~~~~~~~G~~G~ 324 (334)
T PRK13684 303 SNFYKIVFLDPEKGFVLGQRGV 324 (334)
T ss_pred cceEEEEEeCCCceEEECCCce
Confidence 3455556677777654443
No 240
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=0.13 Score=50.68 Aligned_cols=172 Identities=17% Similarity=0.155 Sum_probs=83.9
Q ss_pred cceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
.+...||.+++..++|.......| |+.+|...-+ +++. ...-.+...+..++...+-.+|+.+.
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~-tP~~-~~~~~~~~eI~~lsWNrkvqhILAS~------------- 180 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE-TPFT-PGSQAPPSEIKCLSWNRKVSHILASG------------- 180 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcC-CCCC-CCCCCCcccceEeccchhhhHHhhcc-------------
Confidence 366779999996666766665555 9999887422 1121 10000111122222222222244433
Q ss_pred hhcCCCCceEEEEeCCCCeEEE-EecC--CcccceEEEecCCCeEEEEecCC---ceEEEEEccCCCCCcceeeeeCCCC
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTI-LLQG--LAFANGVALSRDRTFILIAETSN---CRILRFWLHGPNSGKQDVFAELPGF 198 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~-~~~~--~~~~~gi~~~~d~~~lyv~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~ 198 (310)
..+|+...||....+-.+ +... ...-++++|.||...-+++.+.+ ..|-.||++-... ..+.+..-...
T Consensus 181 ----s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass-P~k~~~~H~~G 255 (1049)
T KOG0307|consen 181 ----SPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS-PLKILEGHQRG 255 (1049)
T ss_pred ----CCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC-chhhhcccccc
Confidence 247788999986442221 1111 12246899999976544433443 3666777552111 11112110111
Q ss_pred CCeeEECCCC-CEEEEEecCCccceeeeeeccccccEEeeccch
Q 046018 199 PDNVRSNSNG-EFWVALHAKKGLFGKLILLNSWLGKTLLKLPLS 241 (310)
Q Consensus 199 p~~i~~d~~G-~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~ 241 (310)
.-.+.+.+.+ ++.+++...+++ +.....+|+.+..++..
T Consensus 256 ilslsWc~~D~~lllSsgkD~~i----i~wN~~tgEvl~~~p~~ 295 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDNRI----ICWNPNTGEVLGELPAQ 295 (1049)
T ss_pred eeeeccCCCCchhhhcccCCCCe----eEecCCCceEeeecCCC
Confidence 2233333444 565665555543 33344567777776653
No 241
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=95.00 E-value=0.91 Score=40.17 Aligned_cols=105 Identities=10% Similarity=0.059 Sum_probs=64.8
Q ss_pred cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEec
Q 046018 93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAET 171 (310)
Q Consensus 93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~ 171 (310)
.-++.|...|+|++|.++.. +|.+-.|+..+-.++.+... ......+.+++++.+++ +..
T Consensus 97 c~V~~v~WtPeGRRLltgs~------------------SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmi-SgD 157 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQ------------------SGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMI-SGD 157 (464)
T ss_pred cceeeEEEcCCCceeEeecc------------------cccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEE-EcC
Confidence 35788999999998888763 67777777643333332222 23357899999998554 445
Q ss_pred CCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCCc
Q 046018 172 SNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 172 ~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~~ 219 (310)
..+.|-.|+++=.. ...+.. -......++++++..-++++.+.+.
T Consensus 158 ~gG~iKyWqpnmnn---Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ 203 (464)
T KOG0284|consen 158 KGGMIKYWQPNMNN---VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGT 203 (464)
T ss_pred CCceEEecccchhh---hHHhhHhhhhhhheeccCCCCceeEEecCCCe
Confidence 66788777765211 111111 1123467778877777777776664
No 242
>PHA03098 kelch-like protein; Provisional
Probab=94.99 E-value=2.5 Score=40.01 Aligned_cols=109 Identities=9% Similarity=-0.022 Sum_probs=58.6
Q ss_pred CCcEEEEECCC------ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018 58 TGDLYIADAYL------GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT 131 (310)
Q Consensus 58 ~g~l~v~~~~~------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (310)
+++||+..... .+.++|+.+++.+.....+ .......++.-+++ +|+....... ....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp----~~r~~~~~~~~~~~-iYv~GG~~~~-----------~~~~ 405 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLI----FPRYNPCVVNVNNL-IYVIGGISKN-----------DELL 405 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcC----cCCccceEEEECCE-EEEECCcCCC-----------Cccc
Confidence 57899886542 2778899888765442221 11122223334666 9987531100 0113
Q ss_pred ceEEEEeCCCCeEEEEecCCcccce-EEEecCCCeEEEEecC--------CceEEEEEccC
Q 046018 132 GRLLKYEKTTKEVTILLQGLAFANG-VALSRDRTFILIAETS--------NCRILRFWLHG 183 (310)
Q Consensus 132 g~v~~~d~~~~~~~~~~~~~~~~~g-i~~~~d~~~lyv~~~~--------~~~i~~~~~~~ 183 (310)
..+.+||+.+++++.+........+ -+..-++ .+|+..-. -..+++||+..
T Consensus 406 ~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 406 KTVECFSLNTNKWSKGSPLPISHYGGCAIYHDG-KIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred ceEEEEeCCCCeeeecCCCCccccCceEEEECC-EEEEECCccCCCCCcccceEEEecCCC
Confidence 5689999998888765432111111 2223344 48886422 12488998764
No 243
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=94.90 E-value=1.2 Score=36.87 Aligned_cols=115 Identities=20% Similarity=0.226 Sum_probs=71.3
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccc-cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPL-RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~-~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
....||.+-|.+|+||.....++||.+|+.++..+.+........+ ....++-+.|--.||-+..
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs-------------- 92 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVS-------------- 92 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEc--------------
Confidence 4567899888899999998888899999999988766222111111 1234455556544577765
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCC----------ccc--ceEEEecC------CCeEEEEecCCceEEEE
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGL----------AFA--NGVALSRD------RTFILIAETSNCRILRF 179 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~----------~~~--~gi~~~~d------~~~lyv~~~~~~~i~~~ 179 (310)
..|.=+|+++++|........+ ..| -+.++... ...||-.+...+.|++-
T Consensus 93 ----~~GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q 160 (236)
T PF14339_consen 93 ----NTGQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQ 160 (236)
T ss_pred ----cCCcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEe
Confidence 2677899999988754322111 122 23344332 33567777766666665
No 244
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=94.87 E-value=2 Score=35.93 Aligned_cols=140 Identities=11% Similarity=0.157 Sum_probs=73.5
Q ss_pred EEeccccccccCCCCCcccccc-ce---eceEEEeCCCCcEEEEECCC----ceEEEeCCCCeEEEEEee--cCCccccC
Q 046018 25 AVTTSQRKECVRPFAPDIEHIC-GR---PLGIRFDKKTGDLYIADAYL----GFQVVGPEGGLATQLVTE--AAGQPLRF 94 (310)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~-~~---p~gl~~d~~~g~l~v~~~~~----gi~~~d~~~~~~~~~~~~--~~~~~~~~ 94 (310)
...++..||..+++.+....-. +. ..|..+..+.=.|-++.... -++.+|++.+.++.+.+. +....+..
T Consensus 75 Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~ 154 (364)
T COG4247 75 KKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSS 154 (364)
T ss_pred ccCCeEEEecCCCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeeccCCCCccccCccc
Confidence 3466777777776654442210 00 11233322111233333331 267889998888777654 23334455
Q ss_pred CcceEE--eCC-CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE---eCCCCeEEE----EecCCcccceEEEecCCC
Q 046018 95 TNDLDI--DEH-KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY---EKTTKEVTI----LLQGLAFANGVALSRDRT 164 (310)
Q Consensus 95 ~~~i~~--d~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~---d~~~~~~~~----~~~~~~~~~gi~~~~d~~ 164 (310)
+.+++. ++. |. +|+-... +.|.+-.| |...|++.. ...-.....|+..+..-.
T Consensus 155 ~YGl~lyrs~ktgd-~yvfV~~----------------~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG 217 (364)
T COG4247 155 AYGLALYRSPKTGD-YYVFVNR----------------RQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETG 217 (364)
T ss_pred ceeeEEEecCCcCc-EEEEEec----------------CCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccc
Confidence 666664 454 55 5554432 23444333 333333321 111223457888887777
Q ss_pred eEEEEecCCceEEEEEcc
Q 046018 165 FILIAETSNCRILRFWLH 182 (310)
Q Consensus 165 ~lyv~~~~~~~i~~~~~~ 182 (310)
.||+++. +-.||.|..+
T Consensus 218 ~LYIaeE-dvaiWK~~Ae 234 (364)
T COG4247 218 FLYIAEE-DVAIWKYEAE 234 (364)
T ss_pred eEEEeec-cceeeecccC
Confidence 8999964 5689999765
No 245
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.84 E-value=2.5 Score=37.00 Aligned_cols=167 Identities=16% Similarity=0.143 Sum_probs=90.0
Q ss_pred CcccccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCC
Q 046018 2 PYTGVADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGG 78 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~ 78 (310)
.+++..||.|..|+-...+ |+ +....+-..||+++. +..+++++... ..+.++..
T Consensus 82 ~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~-- 139 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP-- 139 (433)
T ss_pred hhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEEecc-cceEEecCCcceeeeeccCC--
Confidence 3567778888888876643 32 112224566899987 65666665542 23333321
Q ss_pred eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCe-EEEEecCCcccceE
Q 046018 79 LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE-VTILLQGLAFANGV 157 (310)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~~~~~~~~~~~gi 157 (310)
-...+... ....+|--...+. +++|- ...|-.||..... .+.+.-+......+
T Consensus 140 p~~tilg~------s~~~gIdh~~~~~-~FaTc-------------------Ge~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 140 PLHTILGK------SVYLGIDHHRKNS-VFATC-------------------GEQIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred cceeeecc------ccccccccccccc-ccccc-------------------CceeeecccccCCccceeecCCCceeEE
Confidence 11112110 0122232223333 33332 2236667754221 22222233334677
Q ss_pred EEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018 158 ALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 158 ~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~ 219 (310)
.++|-...++.+....+.|..||......-+ .+... -.++.|++.|++-.+++.+....
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~-KVi~~--mRTN~IswnPeafnF~~a~ED~n 252 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQASPLK-KVILT--MRTNTICWNPEAFNFVAANEDHN 252 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCCccc-eeeee--ccccceecCccccceeecccccc
Confidence 7888766677766678899999987432211 12222 24689999998878888777665
No 246
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.83 E-value=0.92 Score=40.18 Aligned_cols=127 Identities=13% Similarity=0.051 Sum_probs=74.9
Q ss_pred EEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeC
Q 046018 61 LYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEK 139 (310)
Q Consensus 61 l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 139 (310)
.++.++.. .|..+|.++...+..... ...+..+...++|..+..+. ++..+-.+|.
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~~~~sv~~-----gg~vtSl~ls~~g~~lLsss------------------RDdtl~viDl 370 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSADKTRSVPL-----GGRVTSLDLSMDGLELLSSS------------------RDDTLKVIDL 370 (459)
T ss_pred eeeecccccceEEEeccCCceeeEeec-----CcceeeEeeccCCeEEeeec------------------CCCceeeeec
Confidence 34444443 366677776654433221 12567788888888666553 3566777787
Q ss_pred CCCeEEEEecC-----CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCC---CCeeEECCCCCEE
Q 046018 140 TTKEVTILLQG-----LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGF---PDNVRSNSNGEFW 211 (310)
Q Consensus 140 ~~~~~~~~~~~-----~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---p~~i~~d~~G~l~ 211 (310)
.+......... ...-+-..|+||+. ...+.+.+++|++|+..+++. +.....+.. ...+.+++.|.-.
T Consensus 371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tgKl---E~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTGKL---EKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred ccccEEEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCceE---EEEeccCCCCcceEEEEEcCCCchh
Confidence 66555443221 12246789999998 445667889999999886533 322222222 3456777777544
Q ss_pred EEE
Q 046018 212 VAL 214 (310)
Q Consensus 212 va~ 214 (310)
++.
T Consensus 447 lsa 449 (459)
T KOG0288|consen 447 LSA 449 (459)
T ss_pred hcc
Confidence 443
No 247
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=94.70 E-value=0.51 Score=41.61 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=59.9
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCC--------C-----CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeC
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPE--------G-----GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDS 112 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~--------~-----~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~ 112 (310)
...+.+.+++ +|+|.......| |..+-.. + .+.-.......+ -...+.+++..++++ +.++.+
T Consensus 66 ~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~-~l~s~s 142 (434)
T KOG1009|consen 66 RAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSN-FLVSGS 142 (434)
T ss_pred ceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCc-eeeeee
Confidence 4566788888 888887766655 3333211 2 100001011111 123578899999998 555543
Q ss_pred CCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCC
Q 046018 113 STSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRT 164 (310)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~ 164 (310)
- +..++.||...|...... .....++|++++|-++
T Consensus 143 ~-----------------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~q 178 (434)
T KOG1009|consen 143 V-----------------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQ 178 (434)
T ss_pred c-----------------cceEEEEEeccceeEeeccccccccceeecchhhh
Confidence 2 667889998888776544 3345689999999776
No 248
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=94.61 E-value=0.31 Score=40.13 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=67.3
Q ss_pred eEEEeCCCCcEEEEECCCceEEEeCC-CCe------EEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 51 GIRFDKKTGDLYIADAYLGFQVVGPE-GGL------ATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~~gi~~~d~~-~~~------~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
-|+..| +++||+.... ++++-.+. ... -+++.. + .-..-..|++++.|- ||...
T Consensus 38 ~i~~~P-~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~---g-~W~~F~~i~~d~~G~-LYaV~------------ 98 (229)
T PF14517_consen 38 DIAAGP-NGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGD---G-GWNSFKFIFFDPTGV-LYAVT------------ 98 (229)
T ss_dssp EEEE-T-TS-EEEEETT-EEEEES---STT--HHHH-EEEE----S--GGG-SEEEE-TTS--EEEEE------------
T ss_pred eEEEcC-CceEEEEECC-ceEEecCCccCcccccccCccccc---C-cccceeEEEecCCcc-EEEec------------
Confidence 477888 9999999754 67776321 111 122221 1 122445899999998 99776
Q ss_pred hhhcCCCCceEEEEeCCCCe--------EEEE-ecCCcccceEEEecCCCeEEEEecCCceEEEE-EccCCCCC--cc-e
Q 046018 124 SILSGDKTGRLLKYEKTTKE--------VTIL-LQGLAFANGVALSRDRTFILIAETSNCRILRF-WLHGPNSG--KQ-D 190 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~--------~~~~-~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~-~~~~~~~~--~~-~ 190 (310)
.+|.|++..+-+.. .+.+ ..+-...+-+.+.++|. ||..+. ++++++. .+.+.... .. .
T Consensus 99 ------~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~Gv-LY~i~~-dg~~~~~~~p~~~~~~W~~~s~ 170 (229)
T PF14517_consen 99 ------PDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGV-LYAITP-DGRLYRRYRPDGGSDRWLSGSG 170 (229)
T ss_dssp ------TT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEET-TE-EEEE---SSTT--HHHH-E
T ss_pred ------cccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCcc-EEEEcC-CCceEEeCCCCCCCCccccccc
Confidence 36778877542211 1222 23333456778888886 888864 4577777 44432110 01 1
Q ss_pred eeeeCC-CCCCeeEECCCCCEEEEEec
Q 046018 191 VFAELP-GFPDNVRSNSNGEFWVALHA 216 (310)
Q Consensus 191 ~~~~~~-~~p~~i~~d~~G~l~va~~~ 216 (310)
.+.... ..+..|.+.++|+||.....
T Consensus 171 ~v~~~gw~~~~~i~~~~~g~L~~V~~~ 197 (229)
T PF14517_consen 171 LVGGGGWDSFHFIFFSPDGNLWAVKSN 197 (229)
T ss_dssp EEESSSGGGEEEEEE-TTS-EEEE-ET
T ss_pred eeccCCcccceEEeeCCCCcEEEEecC
Confidence 111111 23567888999999988433
No 249
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=94.59 E-value=2.6 Score=35.98 Aligned_cols=170 Identities=13% Similarity=0.122 Sum_probs=93.2
Q ss_pred cccccCcEEEEEeCCCCC---eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCc-EEEEECCCceEEEeCCCC
Q 046018 3 YTGVADGRILKWQGDELG---WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGD-LYIADAYLGFQVVGPEGG 78 (310)
Q Consensus 3 ~~~~~~~~i~~~~~~~~~---W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~ 78 (310)
-++..|..|..|....++ |+- ....+...++.+.+ +++ |+-+.....+..+|.+++
T Consensus 63 aSgG~Dr~I~LWnv~gdceN~~~l-------------------kgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG 122 (338)
T KOG0265|consen 63 ASGGSDRAIVLWNVYGDCENFWVL-------------------KGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAETG 122 (338)
T ss_pred eecCCcceEEEEeccccccceeee-------------------ccccceeEeeeecc-CCCEEEEecCCceEEEEecccc
Confidence 356677788888765553 551 12225566788888 555 454544456999999998
Q ss_pred eEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEE
Q 046018 79 LATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVA 158 (310)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~ 158 (310)
+...-... -....|.+.....|- ..+++. ..++++..||...+......+..-.-..++
T Consensus 123 ~~~rk~k~----h~~~vNs~~p~rrg~-~lv~Sg----------------sdD~t~kl~D~R~k~~~~t~~~kyqltAv~ 181 (338)
T KOG0265|consen 123 KRIRKHKG----HTSFVNSLDPSRRGP-QLVCSG----------------SDDGTLKLWDIRKKEAIKTFENKYQLTAVG 181 (338)
T ss_pred eeeehhcc----ccceeeecCccccCC-eEEEec----------------CCCceEEEEeecccchhhccccceeEEEEE
Confidence 75432221 123567677666676 444442 237888889875443322222222234566
Q ss_pred EecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEec
Q 046018 159 LSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHA 216 (310)
Q Consensus 159 ~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~ 216 (310)
|..++.-++. .--++.|-+||+..... .-....-.....+|...++|....++.=
T Consensus 182 f~d~s~qv~s-ggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 182 FKDTSDQVIS-GGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred ecccccceee-ccccCceeeeccccCcc--eEEeecccCceeeEEeccCCCccccccc
Confidence 6665553443 34567788888752210 0011111112356777777766665543
No 250
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.55 E-value=3.1 Score=37.75 Aligned_cols=142 Identities=13% Similarity=0.025 Sum_probs=75.0
Q ss_pred ceEEEeCCCCcEEEEECCCceEEEeCCCCeE-EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018 50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLA-TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG 128 (310)
Q Consensus 50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~ 128 (310)
.++...+ +|.+++....+.+++-.-.+... +.+.. .......++.+.++|. +|++..
T Consensus 242 ~~v~~~~-dG~~~~vg~~G~~~~s~d~G~~~W~~~~~----~~~~~l~~v~~~~dg~-l~l~g~---------------- 299 (398)
T PLN00033 242 STVNRSP-DGDYVAVSSRGNFYLTWEPGQPYWQPHNR----ASARRIQNMGWRADGG-LWLLTR---------------- 299 (398)
T ss_pred eeEEEcC-CCCEEEEECCccEEEecCCCCcceEEecC----CCccceeeeeEcCCCC-EEEEeC----------------
Confidence 3456666 77888877765566654444432 32311 1223567888899999 888772
Q ss_pred CCCceEEEEeCCCC-----eEEEEec--CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceee-eeCCCCCC
Q 046018 129 DKTGRLLKYEKTTK-----EVTILLQ--GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVF-AELPGFPD 200 (310)
Q Consensus 129 ~~~g~v~~~d~~~~-----~~~~~~~--~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~p~ 200 (310)
.|.+++-+-+.. .+..... .......+.+.+|+. +|++. ..+.+++- .++++.=..... ...+..-.
T Consensus 300 --~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly 374 (398)
T PLN00033 300 --GGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLY 374 (398)
T ss_pred --CceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEE-CCCcEEEe-CCCCcceeEccccCCCCccee
Confidence 455555433321 2222211 112245677777766 77763 33455554 343322111110 11222224
Q ss_pred eeEECCCCCEEEEEecCC
Q 046018 201 NVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 201 ~i~~d~~G~l~va~~~~~ 218 (310)
.+.+..+++.|+....+.
T Consensus 375 ~v~f~~~~~g~~~G~~G~ 392 (398)
T PLN00033 375 SVKFFDDKKGFVLGNDGV 392 (398)
T ss_pred EEEEcCCCceEEEeCCcE
Confidence 678777788888875544
No 251
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=94.52 E-value=0.04 Score=27.92 Aligned_cols=17 Identities=18% Similarity=0.538 Sum_probs=13.7
Q ss_pred CCeeEECCCCCEEEEEe
Q 046018 199 PDNVRSNSNGEFWVALH 215 (310)
Q Consensus 199 p~~i~~d~~G~l~va~~ 215 (310)
...|+.|++|+||+++.
T Consensus 7 I~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 7 IYSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEEE-TTSCEEEEET
T ss_pred EEEEEEcCCcCEEEEeC
Confidence 35789999999999985
No 252
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=94.48 E-value=4 Score=37.73 Aligned_cols=121 Identities=16% Similarity=0.102 Sum_probs=70.7
Q ss_pred CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeE-EEEecCCceEEEEEccCCCCCcceeeeeCCCCCC-eeEECCCC
Q 046018 131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFI-LIAETSNCRILRFWLHGPNSGKQDVFAELPGFPD-NVRSNSNG 208 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~l-yv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~-~i~~d~~G 208 (310)
...|+.++.++....+-....+..+.++|+++++-. .+-.-+=.++..||+++. .+.+++..|. .+.+++.|
T Consensus 250 Eq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------~v~df~egpRN~~~fnp~g 323 (566)
T KOG2315|consen 250 EQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------PVFDFPEGPRNTAFFNPHG 323 (566)
T ss_pred cceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------EeEeCCCCCccceEECCCC
Confidence 446888887744444333444456899999998743 344445568999998753 3445554564 48899999
Q ss_pred CEEE-EEecCCccceeeeeeccccccEEeeccchhhhhcccccCCCCceEEEEECCCCCEEEEEE
Q 046018 209 EFWV-ALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVGGKPHATAIKLSEKGEVLEVLE 272 (310)
Q Consensus 209 ~l~v-a~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 272 (310)
+|.+ |.+++..--++ ..+-+..+.+..+.. ....++...|+|+.+.+..
T Consensus 324 ~ii~lAGFGNL~G~mE--vwDv~n~K~i~~~~a-------------~~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 324 NIILLAGFGNLPGDME--VWDVPNRKLIAKFKA-------------ANTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred CEEEEeecCCCCCceE--EEeccchhhcccccc-------------CCceEEEEcCCCcEEEEEe
Confidence 8655 55554321111 112223333333221 2345677888888776654
No 253
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.45 E-value=0.12 Score=46.39 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=33.5
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCe-EEEE----ec---------------CCcc
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE-VTIL----LQ---------------GLAF 153 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-~~~~----~~---------------~~~~ 153 (310)
.+.+|.++.|.++|||+... .|.+..||..+-. .+.+ .. -...
T Consensus 313 LitDI~iSlDDrfLYvs~W~-----------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg 375 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWL-----------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG 375 (461)
T ss_dssp ----EEE-TTS-EEEEEETT-----------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred ceEeEEEccCCCEEEEEccc-----------------CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence 47899999999999999954 7889999865431 1111 10 0134
Q ss_pred cceEEEecCCCeEEEEec
Q 046018 154 ANGVALSRDRTFILIAET 171 (310)
Q Consensus 154 ~~gi~~~~d~~~lyv~~~ 171 (310)
|+-+.+|.||++|||+++
T Consensus 376 PqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 376 PQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp ---EEE-TTSSEEEEE--
T ss_pred CCeEEEccCCeEEEEEee
Confidence 788999999999999864
No 254
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.35 E-value=3.2 Score=36.06 Aligned_cols=142 Identities=10% Similarity=0.054 Sum_probs=59.4
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEE-EeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQV-VGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~-~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
+....+...+ +|++.++...+.++. .++.....+++... ...++..|.+.+++. ||+...
T Consensus 145 gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~----~~~riq~~gf~~~~~-lw~~~~------------- 205 (302)
T PF14870_consen 145 GSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRN----SSRRIQSMGFSPDGN-LWMLAR------------- 205 (302)
T ss_dssp --EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE------SSS-EEEEEE-TTS--EEEEET-------------
T ss_pred ceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccC----ccceehhceecCCCC-EEEEeC-------------
Confidence 4455666666 777555554444543 35443333333221 224678899999999 999872
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCC----ccc---ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-eCCC
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGL----AFA---NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-ELPG 197 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~----~~~---~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~ 197 (310)
.|.|..=+ .....+...... ... -.+++.+++. +|++ ..++.|++ ..|+++.-+..... ..+.
T Consensus 206 -----Gg~~~~s~-~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~-gg~G~l~~-S~DgGktW~~~~~~~~~~~ 276 (302)
T PF14870_consen 206 -----GGQIQFSD-DPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAV-GGSGTLLV-STDGGKTWQKDRVGENVPS 276 (302)
T ss_dssp -----TTEEEEEE--TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEE-ESTT-EEE-ESSTTSS-EE-GGGTTSSS
T ss_pred -----CcEEEEcc-CCCCccccccccCCcccCceeeEEEEecCCCC-EEEE-eCCccEEE-eCCCCccceECccccCCCC
Confidence 34444444 223333332211 111 2357777765 7775 45566554 35554332111111 1233
Q ss_pred CCCeeEECCCCCEEEEEec
Q 046018 198 FPDNVRSNSNGEFWVALHA 216 (310)
Q Consensus 198 ~p~~i~~d~~G~l~va~~~ 216 (310)
....|.+..+..-|+-..+
T Consensus 277 n~~~i~f~~~~~gf~lG~~ 295 (302)
T PF14870_consen 277 NLYRIVFVNPDKGFVLGQD 295 (302)
T ss_dssp ---EEEEEETTEEEEE-ST
T ss_pred ceEEEEEcCCCceEEECCC
Confidence 3344555444445554333
No 255
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=94.32 E-value=0.18 Score=29.55 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=29.7
Q ss_pred eEEEEecCCc-eEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018 165 FILIAETSNC-RILRFWLHGPNSGKQDVFAELPGFPDNVRSNS 206 (310)
Q Consensus 165 ~lyv~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 206 (310)
+|||++...+ +|.+-+++|.. ...++...-..|.++++|.
T Consensus 2 ~iYWtD~~~~~~I~~a~~dGs~--~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWSQDPSIERANLDGSN--RRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETTTTEEEEEEETTSTS--EEEEEESSTSSEEEEEEET
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCCCcCEEEECC
Confidence 5999999999 99999998752 2233433346799999874
No 256
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.31 E-value=3.9 Score=36.87 Aligned_cols=150 Identities=19% Similarity=0.140 Sum_probs=79.7
Q ss_pred EEEEEeCCCCC-eEEEEEec--cccccccCCCCCcc-ccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEe
Q 046018 10 RILKWQGDELG-WTEFAVTT--SQRKECVRPFAPDI-EHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVT 85 (310)
Q Consensus 10 ~i~~~~~~~~~-W~~~~~~~--~~~~~~~~~~~~~~-~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~ 85 (310)
.++++...+++ |+-+.+.+ ++.+++.+-+.... ....+...++++-.+..+||.+....+|-.++.+.... + .
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~--v-e 280 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY--V-E 280 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH--H-H
Confidence 45555555555 54333322 22345544322222 33445677898877678999998887777776653321 1 1
Q ss_pred ecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCe
Q 046018 86 EAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTF 165 (310)
Q Consensus 86 ~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~ 165 (310)
...+-+ ..+.+|-....++ +..... .+.+-+|+.+ ++ ..-.++......+..+++-.+..
T Consensus 281 tlyGHq-d~v~~IdaL~reR-~vtVGg---------------rDrT~rlwKi-~e-esqlifrg~~~sidcv~~In~~H- 340 (479)
T KOG0299|consen 281 TLYGHQ-DGVLGIDALSRER-CVTVGG---------------RDRTVRLWKI-PE-ESQLIFRGGEGSIDCVAFINDEH- 340 (479)
T ss_pred HHhCCc-cceeeechhcccc-eEEecc---------------ccceeEEEec-cc-cceeeeeCCCCCeeeEEEecccc-
Confidence 111110 1233444445555 332221 1234445555 33 22222334445788899887764
Q ss_pred EEEEecCCceEEEEEccC
Q 046018 166 ILIAETSNCRILRFWLHG 183 (310)
Q Consensus 166 lyv~~~~~~~i~~~~~~~ 183 (310)
|++.+.++.|..|++..
T Consensus 341 -fvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 341 -FVSGSDNGSIALWSLLK 357 (479)
T ss_pred -eeeccCCceEEEeeecc
Confidence 56778999999998764
No 257
>PHA02790 Kelch-like protein; Provisional
Probab=94.27 E-value=1.7 Score=40.61 Aligned_cols=97 Identities=7% Similarity=0.020 Sum_probs=56.7
Q ss_pred CCcEEEEECCC----ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce
Q 046018 58 TGDLYIADAYL----GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR 133 (310)
Q Consensus 58 ~g~l~v~~~~~----gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~ 133 (310)
+|+||+..... .+.++|+++.+.+..... +.......++.-+|+ ||+.. |.
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m----~~~r~~~~~~~~~~~-IYv~G--------------------G~ 416 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST----YYPHYKSCALVFGRR-LFLVG--------------------RN 416 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC----CCccccceEEEECCE-EEEEC--------------------Cc
Confidence 68999986532 267889998876543221 111222233345676 99873 34
Q ss_pred EEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEecC-----CceEEEEEcc
Q 046018 134 LLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAETS-----NCRILRFWLH 182 (310)
Q Consensus 134 v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~ 182 (310)
+-+||+++.+++.+.+ +..| .+++.- +++ +|+..-. ...+.+||+.
T Consensus 417 ~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~-~~~-IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 417 AEFYCESSNTWTLIDD-PIYPRDNPELIIV-DNK-LLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred eEEecCCCCcEeEcCC-CCCCccccEEEEE-CCE-EEEECCcCCCcccceEEEEECC
Confidence 6789999988887643 2222 345444 454 8886432 1356666655
No 258
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.22 E-value=4.2 Score=36.95 Aligned_cols=121 Identities=11% Similarity=0.132 Sum_probs=66.3
Q ss_pred ceEEEeCCCCcEEEEE-CCCc-----eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 50 LGIRFDKKTGDLYIAD-AYLG-----FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 50 ~gl~~d~~~g~l~v~~-~~~g-----i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
.++.+++ +|+.++.. ..+| +..+|.++++... +... ......++..++++.+|.+.........
T Consensus 127 ~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~--d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~---- 196 (414)
T PF02897_consen 127 GGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLP--DGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTS---- 196 (414)
T ss_dssp EEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEE--EEEE---EEESEEEEECTTSSEEEEEECSTTTSS-----
T ss_pred eeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcC--Cccc---ccccceEEEeCCCCEEEEEEeCcccccc----
Confidence 3678888 66644333 2222 7788999886432 2111 1123338999998867766643210000
Q ss_pred hhhcCCCCceEEEEeCCCCeE--EEEecCCccc---ceEEEecCCCeEEEEec--CC-ceEEEEEccC
Q 046018 124 SILSGDKTGRLLKYEKTTKEV--TILLQGLAFA---NGVALSRDRTFILIAET--SN-CRILRFWLHG 183 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~--~~~~~~~~~~---~gi~~~~d~~~lyv~~~--~~-~~i~~~~~~~ 183 (310)
.......|+++...+... +.+......+ -++..++|+++|++... .+ ..|+.++...
T Consensus 197 ---~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 197 ---DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp ---CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred ---cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 000134588888765532 2444333333 37888999998877433 23 5788888764
No 259
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.19 E-value=1.3 Score=38.22 Aligned_cols=149 Identities=10% Similarity=0.091 Sum_probs=80.5
Q ss_pred eeceEEEeCCCCcEEEEECCCceEEEeC-CCCeE-EEEEeecCC--ccccCCcceEEeCCCC-EEEEEeCCCchhhhhhh
Q 046018 48 RPLGIRFDKKTGDLYIADAYLGFQVVGP-EGGLA-TQLVTEAAG--QPLRFTNDLDIDEHKG-VIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~-~~~~~-~~~~~~~~~--~~~~~~~~i~~d~~g~-~l~v~~~~~~~~~~~~~ 122 (310)
..+.|++++ +|+=.++.....|.+||. +.+.. ........+ .....+..++++|-.. .+-+....+
T Consensus 160 aAhsL~Fs~-DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q-------- 230 (406)
T KOG2919|consen 160 AAHSLQFSP-DGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ-------- 230 (406)
T ss_pred hheeEEecC-CCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccc--------
Confidence 456899999 676555545556888876 44432 111111111 1122345667776533 233333221
Q ss_pred hhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC----C
Q 046018 123 SSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG----F 198 (310)
Q Consensus 123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~ 198 (310)
.-.|+..+.. +-+..+.........+.+.+||++||........|..||+.-. ...+-.+.+ .
T Consensus 231 --------~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~----~~pv~~L~rhv~~T 297 (406)
T KOG2919|consen 231 --------RVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS----RDPVYALERHVGDT 297 (406)
T ss_pred --------eeeeEecCCC-CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc----cchhhhhhhhccCc
Confidence 2235555532 2334343334456678999999999999888999999998731 111111111 1
Q ss_pred CCee--EECCCCCEEEEEecCC
Q 046018 199 PDNV--RSNSNGEFWVALHAKK 218 (310)
Q Consensus 199 p~~i--~~d~~G~l~va~~~~~ 218 (310)
.-.| .+|++|++.++....+
T Consensus 298 NQRI~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 298 NQRILFDLDPKGEILASGDTDG 319 (406)
T ss_pred cceEEEecCCCCceeeccCCCc
Confidence 1223 4568888877653333
No 260
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=94.09 E-value=0.64 Score=42.98 Aligned_cols=87 Identities=11% Similarity=0.112 Sum_probs=57.9
Q ss_pred CceEEEEeCCCCeEE-EEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCC-CCcceeeee---CCC-----CCC
Q 046018 131 TGRLLKYEKTTKEVT-ILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPN-SGKQDVFAE---LPG-----FPD 200 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~-~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~-~~~~~~~~~---~~~-----~p~ 200 (310)
...||++|++-|++- ++......-|.+.+++-+. |+.+.+.++.|.-||+.... .+....... .|+ .+.
T Consensus 154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT 232 (703)
T KOG2321|consen 154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT 232 (703)
T ss_pred CcceEEEEccccccccccccccccceeeeecCccc-eEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce
Confidence 446999999878764 3444455678899998777 88888889999999987531 111111111 222 357
Q ss_pred eeEECCCC-CEEEEEecCC
Q 046018 201 NVRSNSNG-EFWVALHAKK 218 (310)
Q Consensus 201 ~i~~d~~G-~l~va~~~~~ 218 (310)
.+.++.+| ++-|++..+.
T Consensus 233 al~F~d~gL~~aVGts~G~ 251 (703)
T KOG2321|consen 233 ALKFRDDGLHVAVGTSTGS 251 (703)
T ss_pred EEEecCCceeEEeeccCCc
Confidence 78998888 5666666655
No 261
>KOG4328 consensus WD40 protein [Function unknown]
Probab=93.97 E-value=3.9 Score=36.89 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=89.0
Q ss_pred ceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 50 LGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 50 ~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
.++-+..+++.+++++.-+-...+|.++...+....... ...+++|++.|-..++++|. +
T Consensus 283 s~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh---~kKI~sv~~NP~~p~~laT~-s---------------- 342 (498)
T KOG4328|consen 283 SSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH---KKKITSVALNPVCPWFLATA-S---------------- 342 (498)
T ss_pred eeccccCCCccEEEeecccceEEEEeecCCccchhhhhh---hcccceeecCCCCchheeec-c----------------
Confidence 355566656778888776545556665544321111101 12688899999888344443 2
Q ss_pred CCceEEEEeCCC--CeEEEEecCC---cccceEEEecCCCeEEEEecCCceEEEEEcc--CCCCCc-ceeeee-CC---C
Q 046018 130 KTGRLLKYEKTT--KEVTILLQGL---AFANGVALSRDRTFILIAETSNCRILRFWLH--GPNSGK-QDVFAE-LP---G 197 (310)
Q Consensus 130 ~~g~v~~~d~~~--~~~~~~~~~~---~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~--~~~~~~-~~~~~~-~~---~ 197 (310)
.++.+..||... ++...+.... ...+...|+|++.. +++....+.|.+||.. +.+... ..+..+ .. -
T Consensus 343 ~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl 421 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL 421 (498)
T ss_pred cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccc
Confidence 255666676421 1111111111 23578889999887 5555777899999863 111111 111111 11 1
Q ss_pred CCCeeEECCCCCEEEEEecCCccceeeeeeccccccE-Eeeccch
Q 046018 198 FPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKT-LLKLPLS 241 (310)
Q Consensus 198 ~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~-~~~~~~~ 241 (310)
.|--.++|++-++.+...-... |.++++.++. +..+..|
T Consensus 422 T~fKA~W~P~~~li~vg~~~r~-----IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 422 TPFKAAWDPDYNLIVVGRYPRP-----IDVFDGNGGQMVCELHDP 461 (498)
T ss_pred cchhheeCCCccEEEEeccCcc-----eeEEcCCCCEEeeeccCc
Confidence 2444678888776555444443 6777665554 5655444
No 262
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=93.91 E-value=2.8 Score=35.76 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=40.8
Q ss_pred ccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcceeeeeCCCCCCeeEECCCCC-EEEEEec
Q 046018 153 FANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQDVFAELPGFPDNVRSNSNGE-FWVALHA 216 (310)
Q Consensus 153 ~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~p~~i~~d~~G~-l~va~~~ 216 (310)
....|+|+|.-..|+.+.++.+.|.+|+.... .... ......++-+-.+++..||. ++.+.-+
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~D 93 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCD 93 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccC
Confidence 35689999966668888899999999998642 1111 11222334446788888885 4444433
No 263
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.91 E-value=7.3 Score=38.56 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=19.6
Q ss_pred CCcEEEEECCCceEEEeCCCCeE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLA 80 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~ 80 (310)
++.||+++..+.|+.+|.++++.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~ 216 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKE 216 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcE
Confidence 67899998877799999999874
No 264
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=93.84 E-value=0.79 Score=43.58 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=76.1
Q ss_pred eeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 48 RPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
....|++|+ .-++.+..-. ..|..+|.+.++.++..+...+.. ..+.-+..||.| +|++.+-
T Consensus 598 TlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e-G~lIKv~lDPSg--iY~atSc------------- 660 (1080)
T KOG1408|consen 598 TLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE-GDLIKVILDPSG--IYLATSC------------- 660 (1080)
T ss_pred eEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccCC-CceEEEEECCCc--cEEEEee-------------
Confidence 344889998 4444333333 459999999988776655432221 245567889998 5666543
Q ss_pred cCCCCceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 127 SGDKTGRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
.+.++..||-.+|++.....+.. ...|+-|.+|=++|+-+ ++.++|++|.+.
T Consensus 661 ---sdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv-sgDgCIFvW~lp 713 (1080)
T KOG1408|consen 661 ---SDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV-SGDGCIFVWKLP 713 (1080)
T ss_pred ---cCCceEEEEeccchhhhhhcCcchheeeeeecccchhheee-cCCceEEEEECc
Confidence 25678899988887654333322 35799999999877655 788999999763
No 265
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=93.83 E-value=4 Score=35.25 Aligned_cols=125 Identities=10% Similarity=0.052 Sum_probs=69.7
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEE-----EEecCCcccceEEEecCCCeEEE
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVT-----ILLQGLAFANGVALSRDRTFILI 168 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-----~~~~~~~~~~gi~~~~d~~~lyv 168 (310)
.+.+++++.||+ -+++-.. ++.|..|+.++-..+ ...-....|.-++|+||=+-+++
T Consensus 88 ~vt~~~FsSdGK-~lat~~~-----------------Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv 149 (420)
T KOG2096|consen 88 EVTDVAFSSDGK-KLATISG-----------------DRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVV 149 (420)
T ss_pred ceeeeEEcCCCc-eeEEEeC-----------------CceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEE
Confidence 578999999999 5555433 566777776542111 11123446889999999886766
Q ss_pred EecCCceEEEEEccCCCCCcce----eeee--CCC--CC--CeeEECCCCCEEEEEecCCccceeeeeeccccccEEeec
Q 046018 169 AETSNCRILRFWLHGPNSGKQD----VFAE--LPG--FP--DNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKL 238 (310)
Q Consensus 169 ~~~~~~~i~~~~~~~~~~~~~~----~~~~--~~~--~p--~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~ 238 (310)
+-...+.|++|-+..++.+... .+.+ .+. .. -++-+ +++.-|+..-..... |..++..|+.+..+
T Consensus 150 ~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~----i~lw~lkGq~L~~i 224 (420)
T KOG2096|consen 150 SVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTK----ICLWDLKGQLLQSI 224 (420)
T ss_pred EEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEee-cCCceEEEEecCCCc----EEEEecCCceeeee
Confidence 6567788988876522111111 1111 110 01 11222 334444543333322 66666678888887
Q ss_pred cch
Q 046018 239 PLS 241 (310)
Q Consensus 239 ~~~ 241 (310)
...
T Consensus 225 dtn 227 (420)
T KOG2096|consen 225 DTN 227 (420)
T ss_pred ccc
Confidence 654
No 266
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.79 E-value=4.3 Score=35.88 Aligned_cols=87 Identities=10% Similarity=0.122 Sum_probs=57.9
Q ss_pred CCceEEEEeCCCCeEEEEecC--CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCC
Q 046018 130 KTGRLLKYEKTTKEVTILLQG--LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSN 207 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~~--~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~ 207 (310)
..+.|..||+..++.-+..-. -.....+++.|+++++|++++ .+.+..||..++.+.. ..+....|.+.+|...+.
T Consensus 224 ~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~-~g~l~~FD~r~~kl~g-~~~kg~tGsirsih~hp~ 301 (412)
T KOG3881|consen 224 RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT-KGQLAKFDLRGGKLLG-CGLKGITGSIRSIHCHPT 301 (412)
T ss_pred cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc-cchhheecccCceeec-cccCCccCCcceEEEcCC
Confidence 367899999886544332211 122367889999999998864 5799999988653311 113335578899999998
Q ss_pred CCEEEEEecCC
Q 046018 208 GEFWVALHAKK 218 (310)
Q Consensus 208 G~l~va~~~~~ 218 (310)
+.+..++.-.+
T Consensus 302 ~~~las~GLDR 312 (412)
T KOG3881|consen 302 HPVLASCGLDR 312 (412)
T ss_pred CceEEeeccce
Confidence 87766654333
No 267
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.76 E-value=3.6 Score=37.31 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=62.0
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEE--EEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLAT--QLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~--~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
....++.+.+ +|.+|++...+++++-+-.+.... .+...........+.++.+.++++ +|++..
T Consensus 281 ~~l~~v~~~~-dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~------------ 346 (398)
T PLN00033 281 RRIQNMGWRA-DGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGG------------ 346 (398)
T ss_pred cceeeeeEcC-CCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEEC------------
Confidence 4556788877 899999987766665533322110 122211111122467788888998 988872
Q ss_pred hhcCCCCceEEEEeCCCCeEEEEe--cCCcc-cceEEEecCCCeEEEEecCCceEEEE
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTILL--QGLAF-ANGVALSRDRTFILIAETSNCRILRF 179 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~~--~~~~~-~~gi~~~~d~~~lyv~~~~~~~i~~~ 179 (310)
.|.+++-...++.++... ..... -..+.+.++++ .|++ ..++.|.++
T Consensus 347 ------~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~-G~~G~il~~ 396 (398)
T PLN00033 347 ------SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVL-GNDGVLLRY 396 (398)
T ss_pred ------CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc-eEEE-eCCcEEEEe
Confidence 455665544434445432 11111 23666665555 7776 345667665
No 268
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.72 E-value=7.8 Score=38.25 Aligned_cols=86 Identities=9% Similarity=0.058 Sum_probs=55.7
Q ss_pred CceEEEEeCCCCeEEEEe--cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCC
Q 046018 131 TGRLLKYEKTTKEVTILL--QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNG 208 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~--~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G 208 (310)
.-.+++++- ++.+++-. .......++.+.|.-. |+++++..+.|.+||+... +..+.+......-.-++.-|..
T Consensus 229 qVKlWrmne-tKaWEvDtcrgH~nnVssvlfhp~q~-lIlSnsEDksirVwDm~kR--t~v~tfrrendRFW~laahP~l 304 (1202)
T KOG0292|consen 229 QVKLWRMNE-TKAWEVDTCRGHYNNVSSVLFHPHQD-LILSNSEDKSIRVWDMTKR--TSVQTFRRENDRFWILAAHPEL 304 (1202)
T ss_pred eeeEEEecc-ccceeehhhhcccCCcceEEecCccc-eeEecCCCccEEEEecccc--cceeeeeccCCeEEEEEecCCc
Confidence 445777764 45555421 2233456888888666 8888888999999998732 2234443322223457888889
Q ss_pred CEEEEEecCCcc
Q 046018 209 EFWVALHAKKGL 220 (310)
Q Consensus 209 ~l~va~~~~~~~ 220 (310)
|||.|.++++-+
T Consensus 305 NLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 305 NLFAAGHDSGMI 316 (1202)
T ss_pred ceeeeecCCceE
Confidence 999998888754
No 269
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.71 E-value=4.9 Score=38.52 Aligned_cols=71 Identities=10% Similarity=0.141 Sum_probs=46.8
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE---EeCCCCeEEE-----EecCCcc-cceEEEecCCC
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK---YEKTTKEVTI-----LLQGLAF-ANGVALSRDRT 164 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~---~d~~~~~~~~-----~~~~~~~-~~gi~~~~d~~ 164 (310)
.+..+.++|||.++.+.. .+.|+. ...++|..+. +...... +..+.|..++.
T Consensus 449 ~Issl~wSpDG~RiA~i~-------------------~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~ 509 (591)
T PRK13616 449 PISELQLSRDGVRAAMII-------------------GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDS 509 (591)
T ss_pred CcCeEEECCCCCEEEEEE-------------------CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCE
Confidence 588999999999888875 344544 3334454332 3334444 47789998887
Q ss_pred eEEEEec-CCceEEEEEccCC
Q 046018 165 FILIAET-SNCRILRFWLHGP 184 (310)
Q Consensus 165 ~lyv~~~-~~~~i~~~~~~~~ 184 (310)
|++... .+..++.++.+|.
T Consensus 510 -L~V~~~~~~~~v~~v~vDG~ 529 (591)
T PRK13616 510 -LVVGRSDPEHPVWYVNLDGS 529 (591)
T ss_pred -EEEEecCCCCceEEEecCCc
Confidence 656433 3457899988875
No 270
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=93.69 E-value=1 Score=39.38 Aligned_cols=86 Identities=10% Similarity=0.106 Sum_probs=51.4
Q ss_pred CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCE
Q 046018 131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEF 210 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 210 (310)
++.++.||.-.+....-..-...+|+|+|+| ..+.+++......+|.||+..-.. ...+..+--...-.+.++|-|.=
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~-p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSR-PLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhcc-cchhhcccceeEEEeccCCCcch
Confidence 6678999975443322112245799999999 566888888889999999873210 01111111011234667788866
Q ss_pred EEEEecCC
Q 046018 211 WVALHAKK 218 (310)
Q Consensus 211 ~va~~~~~ 218 (310)
+|+.....
T Consensus 287 fvsgsyDk 294 (433)
T KOG0268|consen 287 FVSGSYDK 294 (433)
T ss_pred hccccccc
Confidence 66554444
No 271
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=93.68 E-value=0.37 Score=28.17 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=29.0
Q ss_pred EEEEEeCCCchhhhhhhhhhhcCCCCc-eEEEEeCCCCeEEE-EecCCcccceEEEec
Q 046018 106 VIYFTDSSTSFQRRQFMSSILSGDKTG-RLLKYEKTTKEVTI-LLQGLAFANGVALSR 161 (310)
Q Consensus 106 ~l~v~~~~~~~~~~~~~~~~~~~~~~g-~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~ 161 (310)
+||+++.. .. .+.+.+.++...++ +...+..|.||++++
T Consensus 2 ~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 2 KIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp EEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred EEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 38999965 34 78888887666554 456788999999875
No 272
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=3.7 Score=36.42 Aligned_cols=150 Identities=11% Similarity=0.166 Sum_probs=79.5
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEee-cCCc--cccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTE-AAGQ--PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~-~~~~--~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
+....|.+++ +|++.+........+++.+++.. ++.. +.+. .+...+ .-.|+.+..++++....
T Consensus 187 ~eV~DL~FS~-dgk~lasig~d~~~VW~~~~g~~--~a~~t~~~k~~~~~~cR-F~~d~~~~~l~laa~~~--------- 253 (398)
T KOG0771|consen 187 AEVKDLDFSP-DGKFLASIGADSARVWSVNTGAA--LARKTPFSKDEMFSSCR-FSVDNAQETLRLAASQF--------- 253 (398)
T ss_pred CccccceeCC-CCcEEEEecCCceEEEEeccCch--hhhcCCcccchhhhhce-ecccCCCceEEEEEecC---------
Confidence 5667899999 88887777666667777777732 2221 1111 111222 12233333377776432
Q ss_pred hhhcCCCCceEEEEeC--CCC----eEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC-C
Q 046018 124 SILSGDKTGRLLKYEK--TTK----EVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL-P 196 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~--~~~----~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~ 196 (310)
+.+.|..++. ..+ +.............++++.||+++-+. +.++.|.+|+...- .....+... .
T Consensus 254 ------~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG-T~dGsVai~~~~~l--q~~~~vk~aH~ 324 (398)
T KOG0771|consen 254 ------PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG-TMDGSVAIYDAKSL--QRLQYVKEAHL 324 (398)
T ss_pred ------CCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe-ccCCcEEEEEecee--eeeEeehhhhe
Confidence 2333333332 111 122222334456789999999966555 77899999985421 111111111 1
Q ss_pred CCCCeeEECCCCCEEEEEecCC
Q 046018 197 GFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 197 ~~p~~i~~d~~G~l~va~~~~~ 218 (310)
+...++.+.|+-+--.....++
T Consensus 325 ~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 325 GFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred eeeeeEEEcCCcCcccccccCC
Confidence 3456777777765555444433
No 273
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=93.59 E-value=4.7 Score=35.34 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=78.8
Q ss_pred eEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 51 GIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
.+.+.| .-.|.+.... ..|..+|..++++..-.. +- .....+|+++..|+ ..++-+..
T Consensus 113 ~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~Lr---GH-t~sv~di~~~a~Gk-~l~tcSsD--------------- 171 (406)
T KOG0295|consen 113 RVIFHP-SEALVVSASEDATIKVFDTETGELERSLR---GH-TDSVFDISFDASGK-YLATCSSD--------------- 171 (406)
T ss_pred eeeecc-CceEEEEecCCceEEEEEccchhhhhhhh---cc-ccceeEEEEecCcc-EEEecCCc---------------
Confidence 455666 4344444333 348889998887632222 21 12478999999998 66665431
Q ss_pred CCceEEEEeCCCCeEEE---EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCC---CCCeeE
Q 046018 130 KTGRLLKYEKTTKEVTI---LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPG---FPDNVR 203 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~---~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~p~~i~ 203 (310)
=.+..||.++- ++. +.........+++-|-|.++. +.+.++.|..|+.+.+ ..+..+++ .-.-+.
T Consensus 172 --l~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~il-S~srD~tik~We~~tg-----~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 172 --LSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHIL-SCSRDNTIKAWECDTG-----YCVKTFPGHSEWVRMVR 242 (406)
T ss_pred --cchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeee-ecccccceeEEecccc-----eeEEeccCchHhEEEEE
Confidence 12555665431 111 111122345677888777544 4467789999988753 11222222 335678
Q ss_pred ECCCCCEEEEEecCC
Q 046018 204 SNSNGEFWVALHAKK 218 (310)
Q Consensus 204 ~d~~G~l~va~~~~~ 218 (310)
+..||.|..+.....
T Consensus 243 v~~DGti~As~s~dq 257 (406)
T KOG0295|consen 243 VNQDGTIIASCSNDQ 257 (406)
T ss_pred ecCCeeEEEecCCCc
Confidence 888898877665444
No 274
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=93.54 E-value=1 Score=41.27 Aligned_cols=78 Identities=15% Similarity=0.112 Sum_probs=46.6
Q ss_pred cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-c
Q 046018 152 AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-W 230 (310)
Q Consensus 152 ~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~ 230 (310)
..+|.++++|||++|-.. +..+.|.+|+.+...+ .......-+.--.+++++||.+.+.. +..++ +..++ .
T Consensus 291 g~in~f~FS~DG~~LA~V-SqDGfLRvF~fdt~eL--lg~mkSYFGGLLCvcWSPDGKyIvtG-GEDDL----VtVwSf~ 362 (636)
T KOG2394|consen 291 GSINEFAFSPDGKYLATV-SQDGFLRIFDFDTQEL--LGVMKSYFGGLLCVCWSPDGKYIVTG-GEDDL----VTVWSFE 362 (636)
T ss_pred ccccceeEcCCCceEEEE-ecCceEEEeeccHHHH--HHHHHhhccceEEEEEcCCccEEEec-CCcce----EEEEEec
Confidence 368999999999987665 4568999998874311 01111111223467899999765543 33333 44444 3
Q ss_pred cccEEee
Q 046018 231 LGKTLLK 237 (310)
Q Consensus 231 ~g~~~~~ 237 (310)
+++.+.+
T Consensus 363 erRVVAR 369 (636)
T KOG2394|consen 363 ERRVVAR 369 (636)
T ss_pred cceEEEe
Confidence 5555554
No 275
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=93.53 E-value=7.9 Score=37.71 Aligned_cols=148 Identities=10% Similarity=0.111 Sum_probs=79.6
Q ss_pred eceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCcccc-CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 49 PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLR-FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~-~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
|.-|...+ .|+.....+..+++.++...+. +............ .....+++|.++ ..++..
T Consensus 163 ~~~I~~~~-~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d--------------- 224 (792)
T KOG1963|consen 163 PKSIVDNN-SGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNER-YLAAGD--------------- 224 (792)
T ss_pred CccEEEcC-CceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccc-eEEEec---------------
Confidence 44455555 5555544444455555433322 1221111111000 145678899998 333322
Q ss_pred CCCCceEEEEeCCC-----CeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCee
Q 046018 128 GDKTGRLLKYEKTT-----KEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNV 202 (310)
Q Consensus 128 ~~~~g~v~~~d~~~-----~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i 202 (310)
.+|+|..|.--. -..+.+.=....-+++++++||..||-. -.++-+.+|..+.+ +++.+..+....-.+
T Consensus 225 --~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSG-G~E~VLv~Wq~~T~---~kqfLPRLgs~I~~i 298 (792)
T KOG1963|consen 225 --SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSG-GREGVLVLWQLETG---KKQFLPRLGSPILHI 298 (792)
T ss_pred --cCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeec-ccceEEEEEeecCC---CcccccccCCeeEEE
Confidence 378888875321 1122221112346899999999877644 45566666665533 223332243334788
Q ss_pred EECCCCCEEEEEecCCcc
Q 046018 203 RSNSNGEFWVALHAKKGL 220 (310)
Q Consensus 203 ~~d~~G~l~va~~~~~~~ 220 (310)
.+.+|+++|......+++
T Consensus 299 ~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 299 VVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred EEcCCCCeEEEEecCceE
Confidence 999999999887777763
No 276
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.35 E-value=3.4 Score=35.57 Aligned_cols=65 Identities=18% Similarity=0.151 Sum_probs=42.5
Q ss_pred ecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCC-CCcc-eeeeeC--------CCCCCeeEECCCCCEEEE
Q 046018 148 LQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPN-SGKQ-DVFAEL--------PGFPDNVRSNSNGEFWVA 213 (310)
Q Consensus 148 ~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~-~~~~-~~~~~~--------~~~p~~i~~d~~G~l~va 213 (310)
...+..|-||+++|.+- +||++..++....|+.+... .+.. .+.... +..|.++.+.....+-|.
T Consensus 19 Dp~L~N~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt 93 (336)
T TIGR03118 19 DPGLRNAWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVS 93 (336)
T ss_pred CccccccceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEc
Confidence 45577899999999774 99999999999999876221 1111 111121 246888888755444343
No 277
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=93.29 E-value=0.31 Score=28.12 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=26.6
Q ss_pred cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCC
Q 046018 91 PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTT 141 (310)
Q Consensus 91 ~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 141 (310)
....|+++++|+.++++|+++.. ...+.+++.++
T Consensus 7 ~~~~~~~la~d~~~~~lYw~D~~-----------------~~~I~~~~~~g 40 (43)
T smart00135 7 GLGHPNGLAVDWIEGRLYWTDWG-----------------LDVIEVANLDG 40 (43)
T ss_pred CCCCcCEEEEeecCCEEEEEeCC-----------------CCEEEEEeCCC
Confidence 34579999999998889999965 46677777653
No 278
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=93.26 E-value=0.99 Score=38.62 Aligned_cols=111 Identities=12% Similarity=0.212 Sum_probs=67.4
Q ss_pred ceEEEeCCCCc-EEEEECCCceEEEeCCCCeEEEEEe-ecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 50 LGIRFDKKTGD-LYIADAYLGFQVVGPEGGLATQLVT-EAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 50 ~gl~~d~~~g~-l~v~~~~~gi~~~d~~~~~~~~~~~-~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
..|.+.| .|+ |.+++...-+..+|.++.+. +.. .+...-...++++-.++.|+ ||++.+.
T Consensus 220 rsiSfHP-sGefllvgTdHp~~rlYdv~T~Qc--fvsanPd~qht~ai~~V~Ys~t~~-lYvTaSk-------------- 281 (430)
T KOG0640|consen 220 RSISFHP-SGEFLLVGTDHPTLRLYDVNTYQC--FVSANPDDQHTGAITQVRYSSTGS-LYVTASK-------------- 281 (430)
T ss_pred eeEeecC-CCceEEEecCCCceeEEeccceeE--eeecCcccccccceeEEEecCCcc-EEEEecc--------------
Confidence 3788999 665 45554443345557776553 222 22222223577888999999 9999864
Q ss_pred CCCCceEEEEeCCCCeEEE-Ee--cCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 128 GDKTGRLLKYEKTTKEVTI-LL--QGLAFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~~~~-~~--~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
+|.|-.||.-++++.. +. .+....-...|++++++++-+ -....+..|.+.
T Consensus 282 ---DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS-G~DS~vkLWEi~ 335 (430)
T KOG0640|consen 282 ---DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS-GKDSTVKLWEIS 335 (430)
T ss_pred ---CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec-CCcceeeeeeec
Confidence 8889999976665533 21 233334456788888854433 344566666654
No 279
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=93.20 E-value=4.9 Score=34.36 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=57.6
Q ss_pred ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC---CCCCCeeEECCCCCEEEEEecCCccceeeeeecc
Q 046018 153 FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL---PGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS 229 (310)
Q Consensus 153 ~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~ 229 (310)
..+-+.|+|||. ++++....+.|+.|+..+.. +-+..+ .+...++...+||+..+++.....+ ...+.
T Consensus 49 eI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdc----eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v----~~wD~ 119 (338)
T KOG0265|consen 49 EIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDC----ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTV----RGWDA 119 (338)
T ss_pred eEEEEEECCCCC-eEeecCCcceEEEEeccccc----cceeeeccccceeEeeeeccCCCEEEEecCCceE----EEEec
Confidence 356789999987 77777788999999876431 111111 1233556778889888887766653 44456
Q ss_pred ccccEEeeccchhhhhcccc
Q 046018 230 WLGKTLLKLPLSFRQLHSLL 249 (310)
Q Consensus 230 ~~g~~~~~~~~~~~~~~~~~ 249 (310)
.+|+.+.+........+.+.
T Consensus 120 ~tG~~~rk~k~h~~~vNs~~ 139 (338)
T KOG0265|consen 120 ETGKRIRKHKGHTSFVNSLD 139 (338)
T ss_pred ccceeeehhccccceeeecC
Confidence 78888777665554444444
No 280
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=93.14 E-value=1 Score=40.17 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=52.1
Q ss_pred eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEec
Q 046018 70 FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQ 149 (310)
Q Consensus 70 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~ 149 (310)
++.+|.++++.+.+... .........+|+|+.+.+.. .+.|+..+..++....+..
T Consensus 25 y~i~d~~~~~~~~l~~~-----~~~~~~~~~sP~g~~~~~v~-------------------~~nly~~~~~~~~~~~lT~ 80 (353)
T PF00930_consen 25 YYIYDIETGEITPLTPP-----PPKLQDAKWSPDGKYIAFVR-------------------DNNLYLRDLATGQETQLTT 80 (353)
T ss_dssp EEEEETTTTEEEESS-E-----ETTBSEEEE-SSSTEEEEEE-------------------TTEEEEESSTTSEEEESES
T ss_pred EEEEecCCCceEECcCC-----ccccccceeecCCCeeEEEe-------------------cCceEEEECCCCCeEEecc
Confidence 67778888877665332 22456778888888666654 5567777766665444432
Q ss_pred C------------------CcccceEEEecCCCeEEEEecCCceEEEE
Q 046018 150 G------------------LAFANGVALSRDRTFILIAETSNCRILRF 179 (310)
Q Consensus 150 ~------------------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~ 179 (310)
+ +....++.++||+++|.+.......|..+
T Consensus 81 dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~ 128 (353)
T PF00930_consen 81 DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEY 128 (353)
T ss_dssp --TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EE
T ss_pred ccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceE
Confidence 2 33457889999999886665554444444
No 281
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.04 E-value=0.59 Score=45.76 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=67.4
Q ss_pred cEEEEECCCceEEEeCCCCeEEEEEee-c-CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018 60 DLYIADAYLGFQVVGPEGGLATQLVTE-A-AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY 137 (310)
Q Consensus 60 ~l~v~~~~~gi~~~d~~~~~~~~~~~~-~-~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~ 137 (310)
..|++-...+++++||+-..- .+... . .=.......+++-+.+|+ |.|++ ..|.|..|
T Consensus 544 ~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~~~~~Fs~~aTt~~G~-iavgs------------------~~G~IRLy 603 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYSSKNNFSCFATTEDGY-IAVGS------------------NKGDIRLY 603 (794)
T ss_pred ceEEEECCCceEEeccCCCCC-ceeeccccccccCCCceEEEecCCce-EEEEe------------------CCCcEEee
Confidence 567887777899999875321 12211 1 001223456788889998 88887 47888889
Q ss_pred eCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecCCceEEEEEc
Q 046018 138 EKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWL 181 (310)
Q Consensus 138 d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~ 181 (310)
|.-+.++++..++++.| -||.++.||++++.+ -...|..++.
T Consensus 604 d~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaT--c~tyLlLi~t 646 (794)
T PF08553_consen 604 DRLGKRAKTALPGLGDPIIGIDVTADGKWILAT--CKTYLLLIDT 646 (794)
T ss_pred cccchhhhhcCCCCCCCeeEEEecCCCcEEEEe--ecceEEEEEE
Confidence 87666666666776665 699999999976654 3357777764
No 282
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=93.03 E-value=1.4 Score=40.91 Aligned_cols=111 Identities=8% Similarity=0.118 Sum_probs=61.5
Q ss_pred ceeceEEEeCCCC-cEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTG-DLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g-~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
..+..+.++. +| .+-|++..+.++.+|.++.+...+-+.....++....-+-- .+++.++-.+
T Consensus 229 ~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~-~~q~~v~S~D-------------- 292 (703)
T KOG2321|consen 229 PSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT-DQQNKVVSMD-------------- 292 (703)
T ss_pred CcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc-CCCceEEecc--------------
Confidence 4577888876 55 34455444558888888765322222222222221111111 2233244333
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEE
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRF 179 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~ 179 (310)
...+-.||..+|+.....+....-|.+++-|++..++.+.. +..+..|
T Consensus 293 -----k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane-~~~m~~y 340 (703)
T KOG2321|consen 293 -----KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANE-SSKMHTY 340 (703)
T ss_pred -----hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecC-CCcceeE
Confidence 33455688888876665555666899999999986666644 4444444
No 283
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=92.97 E-value=0.69 Score=31.86 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=26.7
Q ss_pred ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCC
Q 046018 69 GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSS 113 (310)
Q Consensus 69 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~ 113 (310)
.|..+|++ +.+..+. ....||+|+.+|++++|||++..
T Consensus 37 ~Vvyyd~~--~~~~va~-----g~~~aNGI~~s~~~k~lyVa~~~ 74 (86)
T PF01731_consen 37 NVVYYDGK--EVKVVAS-----GFSFANGIAISPDKKYLYVASSL 74 (86)
T ss_pred eEEEEeCC--EeEEeec-----cCCCCceEEEcCCCCEEEEEecc
Confidence 36666764 3333322 35689999999999999999854
No 284
>PHA03098 kelch-like protein; Provisional
Probab=92.95 E-value=4.5 Score=38.20 Aligned_cols=109 Identities=11% Similarity=0.066 Sum_probs=57.9
Q ss_pred CCcEEEEECC-------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018 58 TGDLYIADAY-------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK 130 (310)
Q Consensus 58 ~g~l~v~~~~-------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~ 130 (310)
+++||+.... ..+.++|+.+.+.+.+...+ ......-++.-++. ||+......... ...
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p----~~r~~~~~~~~~~~-iyv~GG~~~~~~---------~~~ 454 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP----ISHYGGCAIYHDGK-IYVIGGISYIDN---------IKV 454 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC----ccccCceEEEECCE-EEEECCccCCCC---------Ccc
Confidence 5789997552 23788999988766543221 11112223334566 888752210000 001
Q ss_pred CceEEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEecC-----CceEEEEEccC
Q 046018 131 TGRLLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAETS-----NCRILRFWLHG 183 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~~ 183 (310)
...+++||+++++++.+.. ...| .+++.. +++ +|+..-. .+.|++||++.
T Consensus 455 ~~~v~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 455 YNIVESYNPVTNKWTELSS-LNFPRINASLCIF-NNK-IYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred cceEEEecCCCCceeeCCC-CCcccccceEEEE-CCE-EEEEcCCcCCcccceeEEEeCCC
Confidence 2348999999988876542 2222 223322 444 7775422 24678887663
No 285
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=92.84 E-value=5.2 Score=40.46 Aligned_cols=148 Identities=18% Similarity=0.254 Sum_probs=93.1
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
-.+.++++|...+.+|.++.... +.+.+.++.....++.. .+..|..++++|....+|+++....
T Consensus 480 ~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~----~l~~~r~~~v~p~~g~~~wtd~~~~---------- 545 (877)
T KOG1215|consen 480 CIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSK----DLDLPRSIAVDPEKGLMFWTDWGQP---------- 545 (877)
T ss_pred cccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEec----CCCCccceeeccccCeeEEecCCCC----------
Confidence 56889999988889999998743 66666555442223222 1246889999998776888885521
Q ss_pred hcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCc-eEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018 126 LSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNC-RILRFWLHGPNSGKQDVFAELPGFPDNVR 203 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~p~~i~ 203 (310)
. ++.+-..+...... +..+...|+|++++--.+.+|+++.... .|...+.++.+.. .........|..+.
T Consensus 546 -----~-~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~--~~~~~~~~~p~~~~ 617 (877)
T KOG1215|consen 546 -----P-RIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRR--VVDSEDLPHPFGLS 617 (877)
T ss_pred -----c-hhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceE--EeccccCCCceEEE
Confidence 1 34444443323332 3344678999999988888999998887 7888888765221 11112223566666
Q ss_pred ECCCCCEEEEEecC
Q 046018 204 SNSNGEFWVALHAK 217 (310)
Q Consensus 204 ~d~~G~l~va~~~~ 217 (310)
+-. +.+|-..+..
T Consensus 618 ~~~-~~iyw~d~~~ 630 (877)
T KOG1215|consen 618 VFE-DYIYWTDWSN 630 (877)
T ss_pred Eec-ceeEEeeccc
Confidence 643 3455444443
No 286
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=92.84 E-value=2.4 Score=36.74 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=52.8
Q ss_pred CCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCC
Q 046018 130 KTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSN 207 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~ 207 (310)
+.+.|..|+..-.+... +..+...-..+.++|||++++.+...+-+|.+|.+.++. ..... ......++++.+|
T Consensus 69 k~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~----~~~~~~pK~~~kg~~f~~d 144 (447)
T KOG4497|consen 69 KDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK----GYLLPHPKTNVKGYAFHPD 144 (447)
T ss_pred ccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce----eEEecccccCceeEEECCC
Confidence 36678888765334333 334444456789999999888888888999999887531 11112 1122378999999
Q ss_pred CCEEEEE
Q 046018 208 GEFWVAL 214 (310)
Q Consensus 208 G~l~va~ 214 (310)
|++-.-.
T Consensus 145 g~f~ai~ 151 (447)
T KOG4497|consen 145 GQFCAIL 151 (447)
T ss_pred Cceeeee
Confidence 9764433
No 287
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.82 E-value=5.6 Score=34.05 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=76.2
Q ss_pred ccccCcEEEEEeCCCCC-eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEE
Q 046018 4 TGVADGRILKWQGDELG-WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQ 82 (310)
Q Consensus 4 ~~~~~~~i~~~~~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~ 82 (310)
.+.+|+.|++|.....+ .+. .......+-+..++++.+...+|.+.-...+-.+|..+++..+
T Consensus 45 A~SWD~tVR~wevq~~g~~~~----------------ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 45 AGSWDGTVRIWEVQNSGQLVP----------------KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ 108 (347)
T ss_pred ecccCCceEEEEEecCCcccc----------------hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence 56788889999875532 110 1111222445578888744467777666668888999988776
Q ss_pred EEeecCCccccCCcceEEeCC-CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccc-eEEEe
Q 046018 83 LVTEAAGQPLRFTNDLDIDEH-KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFAN-GVALS 160 (310)
Q Consensus 83 ~~~~~~~~~~~~~~~i~~d~~-g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~-gi~~~ 160 (310)
+.... .+. ..+.+-+. ...+.+|.+ .+..|-.||...... +. .+.-|. ..+.+
T Consensus 109 v~~Hd--~pv---kt~~wv~~~~~~cl~TGS-----------------WDKTlKfWD~R~~~p--v~-t~~LPeRvYa~D 163 (347)
T KOG0647|consen 109 VAAHD--APV---KTCHWVPGMNYQCLVTGS-----------------WDKTLKFWDTRSSNP--VA-TLQLPERVYAAD 163 (347)
T ss_pred eeecc--cce---eEEEEecCCCcceeEecc-----------------cccceeecccCCCCe--ee-eeeccceeeehh
Confidence 65432 111 12222111 111445543 267788888753211 11 122343 23333
Q ss_pred cCCCeEEEEecCCceEEEEEccCC
Q 046018 161 RDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 161 ~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
-..- |.+..+.++.|-+|++.++
T Consensus 164 v~~p-m~vVata~r~i~vynL~n~ 186 (347)
T KOG0647|consen 164 VLYP-MAVVATAERHIAVYNLENP 186 (347)
T ss_pred ccCc-eeEEEecCCcEEEEEcCCC
Confidence 3344 4454578899999998754
No 288
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=92.71 E-value=4.7 Score=39.15 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=51.9
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc-ceEEEecCCCeEEEEecC
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-NGVALSRDRTFILIAETS 172 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~ 172 (310)
..++++++++|.+||-+. ..+-+.+|..++++ +.+.+.++.| -+++++||+. +|..-..
T Consensus 253 ~V~~L~fS~~G~~LlSGG------------------~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~-~~sl~~~ 312 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGG------------------REGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD-LYSLVLE 312 (792)
T ss_pred ccceeEEecCCceEeecc------------------cceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC-eEEEEec
Confidence 478899999998566443 36667889888887 5566666665 7999999998 6665567
Q ss_pred CceEEEEEcc
Q 046018 173 NCRILRFWLH 182 (310)
Q Consensus 173 ~~~i~~~~~~ 182 (310)
+++|..+...
T Consensus 313 DNqI~li~~~ 322 (792)
T KOG1963|consen 313 DNQIHLIKAS 322 (792)
T ss_pred CceEEEEecc
Confidence 7899988763
No 289
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=92.68 E-value=0.17 Score=25.56 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=16.0
Q ss_pred cccCCcceEEeCCCCEEEEEe
Q 046018 91 PLRFTNDLDIDEHKGVIYFTD 111 (310)
Q Consensus 91 ~~~~~~~i~~d~~g~~l~v~~ 111 (310)
+...+.+|..|++|+ ||+++
T Consensus 3 ~~n~I~~i~~D~~G~-lWigT 22 (24)
T PF07494_consen 3 PNNNIYSIYEDSDGN-LWIGT 22 (24)
T ss_dssp SSSCEEEEEE-TTSC-EEEEE
T ss_pred CCCeEEEEEEcCCcC-EEEEe
Confidence 345678999999999 99997
No 290
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=92.66 E-value=3.7 Score=37.96 Aligned_cols=113 Identities=15% Similarity=0.197 Sum_probs=68.8
Q ss_pred ceeceEEEeCCCCcEEEEECC---CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY---LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~---~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
+-.|.+.+++ +++=|.+..+ ..+..+|.+..- +.+.+.++ =|.+.+.|.|+.|.++.-+
T Consensus 271 GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~~---v~df~egp----RN~~~fnp~g~ii~lAGFG---------- 332 (566)
T KOG2315|consen 271 GPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGKP---VFDFPEGP----RNTAFFNPHGNIILLAGFG---------- 332 (566)
T ss_pred CCceEEEECC-CCCEEEEEEecccceEEEEcCCCCE---eEeCCCCC----ccceEECCCCCEEEEeecC----------
Confidence 4566788888 6654444433 458888887553 23332222 3678899999966666633
Q ss_pred hhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC-----CceEEEEEccC
Q 046018 124 SILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS-----NCRILRFWLHG 183 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~-----~~~i~~~~~~~ 183 (310)
...|.+-.||..+.+. +.........-..|+|||++++.+.+. ++++.+|+..|
T Consensus 333 -----NL~G~mEvwDv~n~K~-i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 333 -----NLPGDMEVWDVPNRKL-IAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred -----CCCCceEEEeccchhh-ccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 3477888899875221 111122334567899999988777543 34555555544
No 291
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=92.58 E-value=4.3 Score=35.40 Aligned_cols=160 Identities=13% Similarity=0.098 Sum_probs=84.4
Q ss_pred EEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018 52 IRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK 130 (310)
Q Consensus 52 l~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~ 130 (310)
|+++= +.++.|...... |..+|.++++.....-...+ ..-++.+. + . +.|+-+.
T Consensus 241 LCLqy-d~rviisGSSDsTvrvWDv~tge~l~tlihHce----aVLhlrf~-n-g-~mvtcSk----------------- 295 (499)
T KOG0281|consen 241 LCLQY-DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE----AVLHLRFS-N-G-YMVTCSK----------------- 295 (499)
T ss_pred Eeeec-cceEEEecCCCceEEEEeccCCchhhHHhhhcc----eeEEEEEe-C-C-EEEEecC-----------------
Confidence 44554 556777766644 77889988865321110001 12233333 2 2 4455432
Q ss_pred CceEEEEeCCCCeEEE---EecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018 131 TGRLLKYEKTTKEVTI---LLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS 206 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~---~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 206 (310)
+-.+..||........ +..+ ....|-+.+ |.+ ++|+.++.+.|.+|+..+. +.+..+.+.-.||+.-.
T Consensus 296 DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf--d~k-yIVsASgDRTikvW~~st~-----efvRtl~gHkRGIAClQ 367 (499)
T KOG0281|consen 296 DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSASGDRTIKVWSTSTC-----EFVRTLNGHKRGIACLQ 367 (499)
T ss_pred CceeEEEeccCchHHHHHHHHhhhhhheeeecc--ccc-eEEEecCCceEEEEeccce-----eeehhhhcccccceehh
Confidence 4456667665432211 1111 122344444 455 6777789999999997632 33333445567776543
Q ss_pred -CCCEEEEEecCCccceeeeeec-cccccEEeeccchhhhhcccc
Q 046018 207 -NGEFWVALHAKKGLFGKLILLN-SWLGKTLLKLPLSFRQLHSLL 249 (310)
Q Consensus 207 -~G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~~~~~~~~~~~~ 249 (310)
.|++.|+..+.+. |..+ -.-|..+..+....+...++-
T Consensus 368 Yr~rlvVSGSSDnt-----IRlwdi~~G~cLRvLeGHEeLvRciR 407 (499)
T KOG0281|consen 368 YRDRLVVSGSSDNT-----IRLWDIECGACLRVLEGHEELVRCIR 407 (499)
T ss_pred ccCeEEEecCCCce-----EEEEeccccHHHHHHhchHHhhhhee
Confidence 4678787766664 3333 345666655555555444443
No 292
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.31 E-value=6.1 Score=37.35 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=70.5
Q ss_pred ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEee-------cCCccccCCcceEEeCCCCEEEEEeCCCchhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTE-------AAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQR 118 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~-------~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~ 118 (310)
....-|+.-.++..+.+...- +.|+.+|.+++..+.+... ....+......+|..+.|. ++++..
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGg------ 190 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGG------ 190 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecC------
Confidence 344556663326666665444 4599999887633211111 1112333566777777776 777653
Q ss_pred hhhhhhhhcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 119 RQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
..+-+..||+.+++..+ +..--.....+.+++||.+++-+ +..+.|..||+.
T Consensus 191 -----------tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~-sSDgtIrlWdLg 243 (735)
T KOG0308|consen 191 -----------TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA-SSDGTIRLWDLG 243 (735)
T ss_pred -----------cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeec-CCCceEEeeecc
Confidence 25568889998764433 32222335678899999876655 667899999875
No 293
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=92.26 E-value=4.3 Score=35.29 Aligned_cols=37 Identities=19% Similarity=0.312 Sum_probs=29.2
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL 148 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 148 (310)
.+|+|..+++|+ +.|+... ...|+++++++|++....
T Consensus 145 HiNsV~~~~~G~-yLiS~R~-----------------~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 145 HINSVDKDDDGD-YLISSRN-----------------TSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred EeeeeeecCCcc-EEEEecc-----------------cCEEEEEECCCCcEEEEe
Confidence 478899999999 7777643 567999999998887654
No 294
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.23 E-value=4 Score=36.07 Aligned_cols=111 Identities=10% Similarity=0.060 Sum_probs=67.5
Q ss_pred eEEEeCC-CCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018 51 GIRFDKK-TGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG 128 (310)
Q Consensus 51 gl~~d~~-~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~ 128 (310)
++.+-++ ..+-+++-.. +.+..+|+..++ +++.... ..-+....+...|+|++||+++.
T Consensus 207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-RPV~~fd--~~E~~is~~~l~p~gn~Iy~gn~---------------- 267 (412)
T KOG3881|consen 207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQR-RPVAQFD--FLENPISSTGLTPSGNFIYTGNT---------------- 267 (412)
T ss_pred cceecCCCCCceEEEEecceeEEEecCcccC-cceeEec--cccCcceeeeecCCCcEEEEecc----------------
Confidence 4444441 1344444333 457777888654 3443332 11234678889999998998883
Q ss_pred CCCceEEEEeCCCCeEEEE-ecC-CcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 129 DKTGRLLKYEKTTKEVTIL-LQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 129 ~~~g~v~~~d~~~~~~~~~-~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
.|.+..||..+++.-.. ..+ -+.+..|...|.+. ++.+-.-.+-|.++|.+.
T Consensus 268 --~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 268 --KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred --cchhheecccCceeeccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence 67788999876654432 222 24477888888776 444434566777888764
No 295
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=92.22 E-value=8.4 Score=34.66 Aligned_cols=53 Identities=4% Similarity=-0.085 Sum_probs=42.2
Q ss_pred CCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 130 KTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
.+.+|..||.++++...... .....+.+.|.|..-..+++.+..++|..+|.+
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R 317 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCR 317 (463)
T ss_pred CCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeecc
Confidence 47789999999998776443 445578899999766677788899999999876
No 296
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=92.03 E-value=2.4 Score=38.68 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=47.8
Q ss_pred CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE-EecCCccc-ceEEEecCCCeEEEEecC
Q 046018 95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQGLAFA-NGVALSRDRTFILIAETS 172 (310)
Q Consensus 95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~-~gi~~~~d~~~lyv~~~~ 172 (310)
..+|++.|....|+++.. .+.+|+.||....+... +. ...| ..++|.++|-+|. +.+.
T Consensus 211 ~~gicfspsne~l~vsVG-----------------~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~-aG~s 270 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVG-----------------YDKKINIYDIRSQASTDRLT--YSHPLSTVAFSECGTYLC-AGNS 270 (673)
T ss_pred cCcceecCCccceEEEec-----------------ccceEEEeecccccccceee--ecCCcceeeecCCceEEE-eecC
Confidence 468999998884666552 26689999975443321 22 2223 5789999997555 4567
Q ss_pred CceEEEEEccCC
Q 046018 173 NCRILRFWLHGP 184 (310)
Q Consensus 173 ~~~i~~~~~~~~ 184 (310)
.++|+.||+.+.
T Consensus 271 ~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 271 KGELIAYDMRST 282 (673)
T ss_pred CceEEEEecccC
Confidence 799999999864
No 297
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=91.95 E-value=1.4 Score=36.39 Aligned_cols=110 Identities=17% Similarity=0.076 Sum_probs=56.1
Q ss_pred eEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEe----ecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhh
Q 046018 51 GIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVT----EAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSIL 126 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~----~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~ 126 (310)
.|.+++ .|-||..+....+++..+-+........ ...+..-+....|..+++|- ||+-+.
T Consensus 85 ~i~~d~-~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~Gv-LY~i~~-------------- 148 (229)
T PF14517_consen 85 FIFFDP-TGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGV-LYAITP-------------- 148 (229)
T ss_dssp EEEE-T-TS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS--EEEEET--------------
T ss_pred EEEecC-CccEEEeccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCcc-EEEEcC--------------
Confidence 688898 9999999887568777443221111111 11012233456788899998 998773
Q ss_pred cCCCCceEEEE-eCCCCeEE-----EE--ecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 127 SGDKTGRLLKY-EKTTKEVT-----IL--LQGLAFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 127 ~~~~~g~v~~~-d~~~~~~~-----~~--~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
++.+++. .++.+.-. .+ ...-....-|.++|++. ||.+ -.++.||+..+.
T Consensus 149 ----dg~~~~~~~p~~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V-~~~G~lyr~~~p 206 (229)
T PF14517_consen 149 ----DGRLYRRYRPDGGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAV-KSNGKLYRGRPP 206 (229)
T ss_dssp ----TE-EEEE---SSTT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE--ETTEEEEES--
T ss_pred ----CCceEEeCCCCCCCCccccccceeccCCcccceEEeeCCCCc-EEEE-ecCCEEeccCCc
Confidence 5667766 44333111 11 12223367799999987 8887 456899887543
No 298
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=91.40 E-value=0.64 Score=42.59 Aligned_cols=70 Identities=14% Similarity=0.142 Sum_probs=44.5
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-CcccceEEEecCCCeEEEEecC
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-LAFANGVALSRDRTFILIAETS 172 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~ 172 (310)
.+|.+++++||+ ...+.+. +|.+..||-++.++.-+... ...--.++|+|||++ +++.-.
T Consensus 292 ~in~f~FS~DG~-~LA~VSq-----------------DGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKy-IvtGGE 352 (636)
T KOG2394|consen 292 SINEFAFSPDGK-YLATVSQ-----------------DGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKY-IVTGGE 352 (636)
T ss_pred cccceeEcCCCc-eEEEEec-----------------CceEEEeeccHHHHHHHHHhhccceEEEEEcCCccE-EEecCC
Confidence 689999999999 5555543 67777777654332211111 223357899999994 444455
Q ss_pred CceEEEEEcc
Q 046018 173 NCRILRFWLH 182 (310)
Q Consensus 173 ~~~i~~~~~~ 182 (310)
++-|.+|.+.
T Consensus 353 DDLVtVwSf~ 362 (636)
T KOG2394|consen 353 DDLVTVWSFE 362 (636)
T ss_pred cceEEEEEec
Confidence 6777777754
No 299
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=91.31 E-value=7.3 Score=37.60 Aligned_cols=119 Identities=8% Similarity=0.040 Sum_probs=71.1
Q ss_pred cccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018 44 HICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 44 ~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~ 122 (310)
+.....+-+.+++-.-.+.+...++| |=.+|.+..+-+..... -...++|+++.|.-...+++..
T Consensus 131 EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~----nSESiRDV~fsp~~~~~F~s~~---------- 196 (839)
T KOG0269|consen 131 EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS----NSESIRDVKFSPGYGNKFASIH---------- 196 (839)
T ss_pred hhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc----cchhhhceeeccCCCceEEEec----------
Confidence 33356677888875668888888877 55567765543322111 1236889999875442555543
Q ss_pred hhhhcCCCCceEEEEeCCC-CeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 123 SSILSGDKTGRLLKYEKTT-KEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 123 ~~~~~~~~~g~v~~~d~~~-~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
..|.|..||..- .+++...... +..-.+-+.|++. .+.+....+.|-+|++.+.
T Consensus 197 -------dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 197 -------DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred -------CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecCCCccEEEEeccCC
Confidence 378899999731 1122111112 2235677899655 4445456678999998754
No 300
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=91.31 E-value=12 Score=34.77 Aligned_cols=122 Identities=8% Similarity=0.085 Sum_probs=76.5
Q ss_pred ccccccceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC-CCEEEEEeCCCchhh
Q 046018 41 DIEHICGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH-KGVIYFTDSSTSFQR 118 (310)
Q Consensus 41 ~~~~~~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~-g~~l~v~~~~~~~~~ 118 (310)
.+....++..-|++.. +|.+.+.... ..+.++|+-..++.+.+.. + -...+..+.+-|. ++++.++..+
T Consensus 45 eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~T--g-HtaNIFsvKFvP~tnnriv~sgAg----- 115 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSIST--G-HTANIFSVKFVPYTNNRIVLSGAG----- 115 (758)
T ss_pred hhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeec--c-cccceeEEeeeccCCCeEEEeccC-----
Confidence 3445568899999999 9998888766 4688899876665444332 1 1123445555553 4447777644
Q ss_pred hhhhhhhhcCCCCceEEEEeCCCCeEEEEecC-----------CcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 119 RQFMSSILSGDKTGRLLKYEKTTKEVTILLQG-----------LAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 119 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-----------~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
+..|..+|.+.-+-.-...+ .....-|+..|++-..+|+.+..+.|..||+..
T Consensus 116 ------------Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 116 ------------DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred ------------cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 55688888753111000000 112346888888755777778889999999875
No 301
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=90.76 E-value=10 Score=32.90 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=26.2
Q ss_pred ceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEE
Q 046018 47 GRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLAT 81 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~ 81 (310)
-+...+..++ +|.++|.... ..|++++++++++.
T Consensus 144 ~HiNsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~ 178 (299)
T PF14269_consen 144 FHINSVDKDD-DGDYLISSRNTSTIYKIDPSTGKII 178 (299)
T ss_pred cEeeeeeecC-CccEEEEecccCEEEEEECCCCcEE
Confidence 3566888887 8888887766 45999999988753
No 302
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=90.22 E-value=4.4 Score=35.73 Aligned_cols=112 Identities=12% Similarity=0.114 Sum_probs=79.7
Q ss_pred eeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
....+.+++ .+.+|-+.-.+-|.++|..++....-.. .+ ...++|...+..+ |.++.+.
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~---ksl~~i~~~~~~~-Ll~~gss-------------- 320 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TN---KSLNCISYSPLSK-LLASGSS-------------- 320 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cC---cceeEeecccccc-eeeecCC--------------
Confidence 344777777 7788888777889999998876532211 11 2467888889888 7777644
Q ss_pred CCCCceEEEEeCCCCeEEEEe----cCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 128 GDKTGRLLKYEKTTKEVTILL----QGLAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~~~~~~----~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
+..+..|||.++.-..+. .-.....++.++|...+++++.+..+.+..||.+.
T Consensus 321 ---dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 321 ---DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred ---CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 445778898766433222 12234678999999999999999999999999874
No 303
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=90.10 E-value=12 Score=32.68 Aligned_cols=74 Identities=11% Similarity=0.052 Sum_probs=44.0
Q ss_pred CCcEEEEECC------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018 58 TGDLYIADAY------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT 131 (310)
Q Consensus 58 ~g~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (310)
+++|||.... ..++++|+.+.+.+.+...+.. ......++.-+++ ||+..-... ...
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---~r~~~~~~~~~~~-iYv~GG~~~-------------~~~ 185 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE---PRVQPVCVKLQNE-LYVFGGGSN-------------IAY 185 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC---CCCcceEEEECCE-EEEEcCCCC-------------ccc
Confidence 5789988653 2388999998876654322111 1223344455676 998753210 011
Q ss_pred ceEEEEeCCCCeEEEEe
Q 046018 132 GRLLKYEKTTKEVTILL 148 (310)
Q Consensus 132 g~v~~~d~~~~~~~~~~ 148 (310)
..+++||+++.+++.+.
T Consensus 186 ~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 186 TDGYKYSPKKNQWQKVA 202 (323)
T ss_pred cceEEEecCCCeeEECC
Confidence 23689999988887654
No 304
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.06 E-value=16 Score=34.01 Aligned_cols=100 Identities=17% Similarity=0.215 Sum_probs=63.4
Q ss_pred CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY 137 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~ 137 (310)
-+.||-+.....+..+++.......+....+ ..+..+++.|||. +..+. ...|..|
T Consensus 114 ~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~----~~~~sl~is~D~~-~l~~a-------------------s~~ik~~ 169 (541)
T KOG4547|consen 114 LGCIYSVGADLKVVYILEKEKVIIRIWKEQK----PLVSSLCISPDGK-ILLTA-------------------SRQIKVL 169 (541)
T ss_pred cCceEecCCceeEEEEecccceeeeeeccCC----CccceEEEcCCCC-EEEec-------------------cceEEEE
Confidence 4566666555458888888776555544321 2467899999999 66654 4568899
Q ss_pred eCCCCeEEEEecCCccc-ceEEEecC-----CCeEEEEecCCceEEEEEc
Q 046018 138 EKTTKEVTILLQGLAFA-NGVALSRD-----RTFILIAETSNCRILRFWL 181 (310)
Q Consensus 138 d~~~~~~~~~~~~~~~~-~gi~~~~d-----~~~lyv~~~~~~~i~~~~~ 181 (310)
|.++++...-.++...| +.+++..+ |++++-+...+..+..+-.
T Consensus 170 ~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 170 DIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred EccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 99888877666666554 55666554 5555544444444444433
No 305
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=89.95 E-value=6.5 Score=38.78 Aligned_cols=144 Identities=11% Similarity=0.112 Sum_probs=78.6
Q ss_pred eceEEEeCCCCcEEEEECC--CceEEEeCCCCeEEEEEeecCCccccCCcceEEeC------CCCEEEEEeCCCchhhhh
Q 046018 49 PLGIRFDKKTGDLYIADAY--LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE------HKGVIYFTDSSTSFQRRQ 120 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~------~g~~l~v~~~~~~~~~~~ 120 (310)
|.-+.+...+..+.+.+.. ..|+++|.+.|++..-.+.....+ +.+++-+. ... .+++-
T Consensus 483 P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~---v~~~~p~~K~aqlt~e~-tflGl--------- 549 (794)
T PF08553_consen 483 PKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIP---VVDIAPDSKFAQLTNEQ-TFLGL--------- 549 (794)
T ss_pred cchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcc---eeEecccccccccCCCc-eEEEE---------
Confidence 4444444435566666553 469999999988654333221111 23333221 122 34443
Q ss_pred hhhhhhcCCCCceEEEEeCCCCeEEEEec------CCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeee
Q 046018 121 FMSSILSGDKTGRLLKYEKTTKEVTILLQ------GLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAE 194 (310)
Q Consensus 121 ~~~~~~~~~~~g~v~~~d~~~~~~~~~~~------~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~ 194 (310)
....|+++||.-..-+.+.. ....=.+++-+.+|. +.|+ +..|.|..||.-+.+ ....+..
T Consensus 550 ---------s~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~-iavg-s~~G~IRLyd~~g~~--AKT~lp~ 616 (794)
T PF08553_consen 550 ---------SDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGY-IAVG-SNKGDIRLYDRLGKR--AKTALPG 616 (794)
T ss_pred ---------CCCceEEeccCCCCCceeeccccccccCCCceEEEecCCce-EEEE-eCCCcEEeecccchh--hhhcCCC
Confidence 25679999974322111111 111124677777775 6666 667899999854421 1122222
Q ss_pred CCCCCCeeEECCCCCEEEEEecCC
Q 046018 195 LPGFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 195 ~~~~p~~i~~d~~G~l~va~~~~~ 218 (310)
+..-.-+|.+..||+..+|+-..-
T Consensus 617 lG~pI~~iDvt~DGkwilaTc~ty 640 (794)
T PF08553_consen 617 LGDPIIGIDVTADGKWILATCKTY 640 (794)
T ss_pred CCCCeeEEEecCCCcEEEEeecce
Confidence 222236899999998888876654
No 306
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=89.65 E-value=3.9 Score=34.33 Aligned_cols=69 Identities=25% Similarity=0.225 Sum_probs=45.3
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE-EEEecCCcccceEEEecCCCeEEEEecC
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV-TILLQGLAFANGVALSRDRTFILIAETS 172 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~-~~~~~~~~~~~gi~~~~d~~~lyv~~~~ 172 (310)
..+++.+-||++ |+.+.. | ++++..|.-.+... .++...-...|.++|+||-. |..+.+.
T Consensus 253 Gv~gvrIRpD~K-IlATAG---W--------------D~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-lmAaask 313 (323)
T KOG0322|consen 253 GVSGVRIRPDGK-ILATAG---W--------------DHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-LMAAASK 313 (323)
T ss_pred CccceEEccCCc-EEeecc---c--------------CCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-hhhhccC
Confidence 567899999999 887752 2 55555554433322 22222235578999999966 6666678
Q ss_pred CceEEEEEc
Q 046018 173 NCRILRFWL 181 (310)
Q Consensus 173 ~~~i~~~~~ 181 (310)
+.+|..|++
T Consensus 314 D~rISLWkL 322 (323)
T KOG0322|consen 314 DARISLWKL 322 (323)
T ss_pred CceEEeeec
Confidence 888888763
No 307
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=89.48 E-value=11 Score=31.03 Aligned_cols=108 Identities=10% Similarity=0.102 Sum_probs=63.7
Q ss_pred CCcEEEEECCCc-eEEEeCCCCeEEEEEeec---CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce
Q 046018 58 TGDLYIADAYLG-FQVVGPEGGLATQLVTEA---AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR 133 (310)
Q Consensus 58 ~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~---~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~ 133 (310)
+|-+++...... |..+|.+-.......+.. .+........+++||.|+ |.++... +..
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~~-----------------dss 254 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGHA-----------------DSS 254 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeeccC-----------------CCc
Confidence 566666655544 555565543332222221 233334567899999999 8887532 455
Q ss_pred EEEEeCCCCeEE-EEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 134 LLKYEKTTKEVT-ILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 134 v~~~d~~~~~~~-~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
...||..+++.. .+.+.-.....+.|+|.--+|+ +-+....|..-|+.|.
T Consensus 255 c~lydirg~r~iq~f~phsadir~vrfsp~a~yll-t~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 255 CMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLL-TCSYDMKIKLTDLQGD 305 (350)
T ss_pred eEEEEeeCCceeeeeCCCccceeEEEeCCCceEEE-EecccceEEEeecccc
Confidence 667777666543 3333334456788998655444 4467778877776653
No 308
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=89.42 E-value=0.45 Score=27.13 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=17.6
Q ss_pred CCCeeEECCCCCEEEEEecCC
Q 046018 198 FPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 198 ~p~~i~~d~~G~l~va~~~~~ 218 (310)
.+.+|++|++|++||+.....
T Consensus 14 ~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECCCCCEEEEEeecC
Confidence 478999999999999876544
No 309
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.30 E-value=17 Score=33.06 Aligned_cols=130 Identities=14% Similarity=0.113 Sum_probs=68.1
Q ss_pred eEEEeCC--CCeE-EEEEeecC---CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCe
Q 046018 70 FQVVGPE--GGLA-TQLVTEAA---GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE 143 (310)
Q Consensus 70 i~~~d~~--~~~~-~~~~~~~~---~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~ 143 (310)
++|.... .+.. +.+.+... +........+.++|+|+++.++-+. .+.....++.+|.++|+
T Consensus 95 ~~r~~~~~~~~~~~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~-------------~G~e~~~l~v~Dl~tg~ 161 (414)
T PF02897_consen 95 LYRRKTDEEDGPEEEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSD-------------GGSEWYTLRVFDLETGK 161 (414)
T ss_dssp EEEEETTS-TS-C-EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEE-------------TTSSEEEEEEEETTTTE
T ss_pred EEEEecccCCCCceEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecC-------------CCCceEEEEEEECCCCc
Confidence 5565544 3333 45555421 1111233467789999977766432 12223468899999886
Q ss_pred EEEEecCCcccceEEEecCCCeEEEEecC----------CceEEEEEccCCCCCcceeeeeCCCCCC---eeEECCCCCE
Q 046018 144 VTILLQGLAFANGVALSRDRTFILIAETS----------NCRILRFWLHGPNSGKQDVFAELPGFPD---NVRSNSNGEF 210 (310)
Q Consensus 144 ~~~~~~~~~~~~gi~~~~d~~~lyv~~~~----------~~~i~~~~~~~~~~~~~~~~~~~~~~p~---~i~~d~~G~l 210 (310)
...-.-......+++|.+|++.+|.+... ...|+++....... ....+...+..+. ++..+++|+.
T Consensus 162 ~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~-~d~lvfe~~~~~~~~~~~~~s~d~~~ 240 (414)
T PF02897_consen 162 FLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS-EDELVFEEPDEPFWFVSVSRSKDGRY 240 (414)
T ss_dssp EEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG-G-EEEEC-TTCTTSEEEEEE-TTSSE
T ss_pred CcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH-hCeeEEeecCCCcEEEEEEecCcccE
Confidence 54311011122349999998877776543 33577777654322 2123322222222 5777888875
Q ss_pred EEE
Q 046018 211 WVA 213 (310)
Q Consensus 211 ~va 213 (310)
.+.
T Consensus 241 l~i 243 (414)
T PF02897_consen 241 LFI 243 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 310
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.26 E-value=12 Score=33.26 Aligned_cols=144 Identities=11% Similarity=0.019 Sum_probs=69.0
Q ss_pred ceEEEeCCCCcEEEEECCCc-eEEEe-CCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 50 LGIRFDKKTGDLYIADAYLG-FQVVG-PEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 50 ~gl~~d~~~g~l~v~~~~~g-i~~~d-~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
.-+++.. +|.+..+...+| +..++ |+-. ++.... .....+.++.++|||. +.++...
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~---t~l~e~--~~~~eV~DL~FS~dgk-~lasig~-------------- 206 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSML---TILEEI--AHHAEVKDLDFSPDGK-FLASIGA-------------- 206 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcch---hhhhhH--hhcCccccceeCCCCc-EEEEecC--------------
Confidence 3466766 666666655555 44445 4321 111111 1123688999999999 7777633
Q ss_pred CCCCceEEEEeCCCCeEEEEecCCcc---cceEEEecCC--CeEEEEec--CCceEEEEEccCC---CCCcceeeeeCCC
Q 046018 128 GDKTGRLLKYEKTTKEVTILLQGLAF---ANGVALSRDR--TFILIAET--SNCRILRFWLHGP---NSGKQDVFAELPG 197 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~~~~~~~~~~~---~~gi~~~~d~--~~lyv~~~--~~~~i~~~~~~~~---~~~~~~~~~~~~~ 197 (310)
+ ....|+.+++..-.-..+... -.-+.|+.|+ ..|+++.. ..++|..++..-. .............
T Consensus 207 ---d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~ 282 (398)
T KOG0771|consen 207 ---D-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK 282 (398)
T ss_pred ---C-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC
Confidence 2 455566666622111111111 1234444444 33555433 3345555554311 0000011100112
Q ss_pred CCCeeEECCCCCEEE-EEecCC
Q 046018 198 FPDNVRSNSNGEFWV-ALHAKK 218 (310)
Q Consensus 198 ~p~~i~~d~~G~l~v-a~~~~~ 218 (310)
....|+++.+|++.. ++..+.
T Consensus 283 siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 283 SISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cceeEEEcCCCcEEEEeccCCc
Confidence 457899999998655 454433
No 311
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=89.21 E-value=8 Score=34.71 Aligned_cols=115 Identities=14% Similarity=0.191 Sum_probs=67.8
Q ss_pred eEEEeCC-CCcEEEEECCCceEEEeCCCCeEE-E-E--EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 51 GIRFDKK-TGDLYIADAYLGFQVVGPEGGLAT-Q-L--VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 51 gl~~d~~-~g~l~v~~~~~gi~~~d~~~~~~~-~-~--~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
||.++.. .|.|.-+...+.|..+|....... . + .....+ -....+++++.+-...+|.+...
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~-h~~~VeDV~~h~~h~~lF~sv~d------------ 248 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG-HEDVVEDVAWHPLHEDLFGSVGD------------ 248 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeec-CCcceehhhccccchhhheeecC------------
Confidence 5666542 334444444455777766543221 0 0 000111 12247888888765546655432
Q ss_pred hcCCCCceEEEEeCCCC--eEEEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 126 LSGDKTGRLLKYEKTTK--EVTILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~--~~~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
++.+..||..++ +.+..... ....+.++|.|-+.+++.+.+.+++|..||++.
T Consensus 249 -----d~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 249 -----DGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred -----CCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 778999997642 12211122 234589999998888999888899999999875
No 312
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.80 E-value=12 Score=34.66 Aligned_cols=134 Identities=10% Similarity=0.085 Sum_probs=79.5
Q ss_pred CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKY 137 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~ 137 (310)
.+.|-|+ ....|+.++..++.++.+.+.. ...+..+..+++|+.|-++. ..|.|..|
T Consensus 188 ~n~laVa-lg~~vylW~~~s~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~------------------~~g~v~iw 244 (484)
T KOG0305|consen 188 ANVLAVA-LGQSVYLWSASSGSVTELCSFG----EELVTSVKWSPDGSHLAVGT------------------SDGTVQIW 244 (484)
T ss_pred CCeEEEE-ecceEEEEecCCCceEEeEecC----CCceEEEEECCCCCEEEEee------------------cCCeEEEE
Confidence 3344444 5556999999998877665432 34678899999999565555 37889999
Q ss_pred eCCCCeEEEEecC--CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEe
Q 046018 138 EKTTKEVTILLQG--LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALH 215 (310)
Q Consensus 138 d~~~~~~~~~~~~--~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~ 215 (310)
|.++.+...-... ......+++. .. ++.+....+.|..+|..-.... ......-....-++.+.+||+...+..
T Consensus 245 D~~~~k~~~~~~~~h~~rvg~laW~--~~-~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGg 320 (484)
T KOG0305|consen 245 DVKEQKKTRTLRGSHASRVGSLAWN--SS-VLSSGSRDGKILNHDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGG 320 (484)
T ss_pred ehhhccccccccCCcCceeEEEecc--Cc-eEEEecCCCcEEEEEEecchhh-hhhhhcccceeeeeEECCCCCeeccCC
Confidence 9865433222222 2234456666 33 6667778889999988632110 010110112235677777776655543
Q ss_pred cCC
Q 046018 216 AKK 218 (310)
Q Consensus 216 ~~~ 218 (310)
..+
T Consensus 321 nDN 323 (484)
T KOG0305|consen 321 NDN 323 (484)
T ss_pred Ccc
Confidence 333
No 313
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=88.52 E-value=5.2 Score=35.53 Aligned_cols=99 Identities=12% Similarity=0.181 Sum_probs=59.5
Q ss_pred cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCC--------C-----C-eEEE---EecCCcccc
Q 046018 93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKT--------T-----K-EVTI---LLQGLAFAN 155 (310)
Q Consensus 93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~--------~-----~-~~~~---~~~~~~~~~ 155 (310)
...|.+.++|+|. +..+... .|.|+.|-+. + . .+.+ +..-...+.
T Consensus 66 ~aVN~vRf~p~ge-lLASg~D-----------------~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diy 127 (434)
T KOG1009|consen 66 RAVNVVRFSPDGE-LLASGGD-----------------GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIY 127 (434)
T ss_pred ceeEEEEEcCCcC-eeeecCC-----------------CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchh
Confidence 3578999999999 8876532 5556665433 1 1 1111 111223467
Q ss_pred eEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEE
Q 046018 156 GVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWV 212 (310)
Q Consensus 156 gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v 212 (310)
.++++||+.++. +.+..+.+..||...+.+ ...+.+-..++.+++.|+-+....
T Consensus 128 dL~Ws~d~~~l~-s~s~dns~~l~Dv~~G~l--~~~~~dh~~yvqgvawDpl~qyv~ 181 (434)
T KOG1009|consen 128 DLAWSPDSNFLV-SGSVDNSVRLWDVHAGQL--LAILDDHEHYVQGVAWDPLNQYVA 181 (434)
T ss_pred hhhccCCCceee-eeeccceEEEEEecccee--Eeeccccccccceeecchhhhhhh
Confidence 899999998544 557778999999874321 111222335677777777665443
No 314
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.51 E-value=17 Score=32.08 Aligned_cols=124 Identities=10% Similarity=0.092 Sum_probs=69.3
Q ss_pred ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe
Q 046018 69 GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL 148 (310)
Q Consensus 69 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 148 (310)
-|..++.+++........ . ..-..-+.+..||. |..+-+. +.+|..|-..+++++.+.
T Consensus 216 tik~We~~tg~cv~t~~~---h-~ewvr~v~v~~DGt-i~As~s~-----------------dqtl~vW~~~t~~~k~~l 273 (406)
T KOG0295|consen 216 TIKAWECDTGYCVKTFPG---H-SEWVRMVRVNQDGT-IIASCSN-----------------DQTLRVWVVATKQCKAEL 273 (406)
T ss_pred ceeEEecccceeEEeccC---c-hHhEEEEEecCCee-EEEecCC-----------------CceEEEEEeccchhhhhh
Confidence 355556665543222111 1 11355677778887 7766543 556666766665333222
Q ss_pred cCCccc-ceEEEec--------------CCCeEEEEecCCceEEEEEccCCCCCcceeeee---CCCCCCeeEECCCCCE
Q 046018 149 QGLAFA-NGVALSR--------------DRTFILIAETSNCRILRFWLHGPNSGKQDVFAE---LPGFPDNVRSNSNGEF 210 (310)
Q Consensus 149 ~~~~~~-~gi~~~~--------------d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~p~~i~~d~~G~l 210 (310)
.....| ..++|.| ++.....+.+.++.|..||+..+ ..+.. ......++++.|.|+.
T Consensus 274 R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-----~cL~tL~ghdnwVr~~af~p~Gky 348 (406)
T KOG0295|consen 274 REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-----MCLFTLVGHDNWVRGVAFSPGGKY 348 (406)
T ss_pred hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-----eEEEEEecccceeeeeEEcCCCeE
Confidence 222221 2233322 12224555577788999988743 22322 2346688999999999
Q ss_pred EEEEecCCc
Q 046018 211 WVALHAKKG 219 (310)
Q Consensus 211 ~va~~~~~~ 219 (310)
.++..++..
T Consensus 349 i~ScaDDkt 357 (406)
T KOG0295|consen 349 ILSCADDKT 357 (406)
T ss_pred EEEEecCCc
Confidence 888887765
No 315
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.36 E-value=2.2 Score=38.53 Aligned_cols=183 Identities=11% Similarity=0.088 Sum_probs=94.4
Q ss_pred ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec
Q 046018 92 LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET 171 (310)
Q Consensus 92 ~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~ 171 (310)
-..|..+-...+|+++.++. ..|-|..+|..++.+..-.........++|-....++-|+
T Consensus 129 eFGPY~~~ytrnGrhlllgG------------------rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-- 188 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGG------------------RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-- 188 (545)
T ss_pred ccCCeeeeecCCccEEEecC------------------CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh--
Confidence 34688889999999888776 4678889998887766544434445566666555533333
Q ss_pred CCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhcccccC
Q 046018 172 SNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSLLVG 251 (310)
Q Consensus 172 ~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~~ 251 (310)
-...+|+||-.|-. ..++... .....+.+=|---|.++.+..+.. -+.+-..|+++..+.+.......+ -
T Consensus 189 QK~y~yvYD~~GtE---lHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L----~Y~DVS~GklVa~~~t~~G~~~vm--~ 258 (545)
T KOG1272|consen 189 QKKYVYVYDNNGTE---LHCLKRH-IRVARLEFLPYHFLLVAASEAGFL----KYQDVSTGKLVASIRTGAGRTDVM--K 258 (545)
T ss_pred hhceEEEecCCCcE---Eeehhhc-CchhhhcccchhheeeecccCCce----EEEeechhhhhHHHHccCCccchh--h
Confidence 34677888765431 2222111 011233333444455555544421 122334566655554322111111 1
Q ss_pred CCCceEEEEECCCCCEEEEEEcCCC-Ce-------ecceeEEEEeCCEEEEecCCCCeEEEe
Q 046018 252 GKPHATAIKLSEKGEVLEVLEDCEG-KT-------LSFISEVEEKDGQLWMGSVLMPFIGIY 305 (310)
Q Consensus 252 ~~~~~~~~~~d~~g~~~~~~~~~~g-~~-------~~~~~~~~~~~g~l~vgs~~~~~i~~~ 305 (310)
..+...++.+...+..+..|+ |+. .+ ...+++++...+--|+.+.+.++-..+
T Consensus 259 qNP~NaVih~GhsnGtVSlWS-P~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kI 319 (545)
T KOG1272|consen 259 QNPYNAVIHLGHSNGTVSLWS-PNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKI 319 (545)
T ss_pred cCCccceEEEcCCCceEEecC-CCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeE
Confidence 233456667765555555554 332 22 124566766544446666655554444
No 316
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=88.22 E-value=6.3 Score=37.30 Aligned_cols=119 Identities=9% Similarity=0.073 Sum_probs=67.7
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
..+-++|+++ +|+...+.-.+| |.++++..+.. ++... .++...+.-.|...-||+.+.++....
T Consensus 721 dqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~-pv~Eg-~gpvgtRgARi~wacdgr~viv~Gfdk----------- 786 (1012)
T KOG1445|consen 721 DQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQ-PVYEG-KGPVGTRGARILWACDGRIVIVVGFDK----------- 786 (1012)
T ss_pred CceeEEEECC-CCcceeeeecCceEEEeCCCCCCC-ccccC-CCCccCcceeEEEEecCcEEEEecccc-----------
Confidence 5667999999 888776655554 88888887653 33222 222233445577777888344433211
Q ss_pred hcCCCCceEEEEeCCCCeEEE----EecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 126 LSGDKTGRLLKYEKTTKEVTI----LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~----~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
...-.|..||.++-.... .......+----+++|.+.|+++.-+...|+.|..-
T Consensus 787 ---~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~ 844 (1012)
T KOG1445|consen 787 ---SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI 844 (1012)
T ss_pred ---cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence 012235555543321111 111111121223678888899998888999999764
No 317
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.21 E-value=27 Score=35.44 Aligned_cols=203 Identities=16% Similarity=0.166 Sum_probs=103.3
Q ss_pred CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeC--CCCcEEEEECCCceEEEeCCCCe
Q 046018 2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDK--KTGDLYIADAYLGFQVVGPEGGL 79 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~--~~g~l~v~~~~~gi~~~d~~~~~ 79 (310)
++++..+|.|+.|......|-..+- +..+..=+ .+. ...+-.|+.+|. ..|.|+++..-.-|..+|.+...
T Consensus 1126 lLtas~dGvIRIwk~y~~~~~~~eL--VTaw~~Ls----~~~-~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~ 1198 (1387)
T KOG1517|consen 1126 LLTASSDGVIRIWKDYADKWKKPEL--VTAWSSLS----DQL-PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ 1198 (1387)
T ss_pred eeeeccCceEEEecccccccCCcee--EEeecccc----ccC-ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccce
Confidence 4677789999999887765511000 00110000 000 112233566664 25678777543336666877543
Q ss_pred EEEEEeecCCccccCCcceEEeC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeE---EEEe---cCCc
Q 046018 80 ATQLVTEAAGQPLRFTNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEV---TILL---QGLA 152 (310)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~---~~~~---~~~~ 152 (310)
...+.+.+ ....+..+..+- .|+ +.++... +|.|-.||...... .... ....
T Consensus 1199 --~~~diP~~-s~t~vTaLS~~~~~gn-~i~AGfa-----------------DGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1199 --VVADIPYG-SSTLVTALSADLVHGN-IIAAGFA-----------------DGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred --eEeecccC-CCccceeecccccCCc-eEEEeec-----------------CCceEEeecccCCccccceeecccCCcc
Confidence 23333222 233455555553 467 7777643 78888887532211 1111 1112
Q ss_pred ccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcceeeeeC-CC-CCCeeEECCCCCEEEEEecCCccceeeeeecc
Q 046018 153 FANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQDVFAEL-PG-FPDNVRSNSNGEFWVALHAKKGLFGKLILLNS 229 (310)
Q Consensus 153 ~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~-~~-~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~ 229 (310)
...++.+-+.|-.=+|+.+.++.|..+|+... ..........- .| .-..|.+.+.-.|+.+... . . +.+|+
T Consensus 1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~----ikIy~ 1331 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-L----IKIYS 1331 (1387)
T ss_pred cceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-e----EEEEe
Confidence 24566666654323566688899999999853 22222222221 12 1355677666666544433 2 2 66777
Q ss_pred ccccEEeec
Q 046018 230 WLGKTLLKL 238 (310)
Q Consensus 230 ~~g~~~~~~ 238 (310)
..|+.+..+
T Consensus 1332 ~~G~~l~~~ 1340 (1387)
T KOG1517|consen 1332 LSGEQLNII 1340 (1387)
T ss_pred cChhhhccc
Confidence 666655433
No 318
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=87.84 E-value=25 Score=33.25 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=48.2
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN 173 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~ 173 (310)
...+|.+++.|. |++.. ..+|.|-.|...||++.....-......|+|+|..+.-+++-...
T Consensus 402 ~Vr~iSvdp~G~--wlasG----------------sdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~ 463 (733)
T KOG0650|consen 402 LVRSISVDPSGE--WLASG----------------SDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVG 463 (733)
T ss_pred eEEEEEecCCcc--eeeec----------------CCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEec
Confidence 356778888775 55542 247888889988888766544455678899999877433333445
Q ss_pred ceEEEEEcc
Q 046018 174 CRILRFWLH 182 (310)
Q Consensus 174 ~~i~~~~~~ 182 (310)
.++.+.++.
T Consensus 464 ~~~~ivnp~ 472 (733)
T KOG0650|consen 464 ECVLIVNPI 472 (733)
T ss_pred CceEEeCcc
Confidence 567777764
No 319
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=87.53 E-value=11 Score=35.61 Aligned_cols=107 Identities=9% Similarity=-0.018 Sum_probs=67.8
Q ss_pred CCcEEEEECCCceEEEeCCCCeEEEEEeecCCcc--ccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQP--LRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL 135 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~ 135 (310)
...||+++..++|..+|.+...++.--....... .+.+.+++..| |...+|+.++ +.++.
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasG-----------------DsT~r 125 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASG-----------------DSTIR 125 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccC-----------------Cceee
Confidence 4468888888778888776544330000011111 12355666677 6657777654 66788
Q ss_pred EEeCCCCeEEEEe---cCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 136 KYEKTTKEVTILL---QGLAFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 136 ~~d~~~~~~~~~~---~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
.||.++.++.-.. .....-..+++.+++..++++...++.|.+||+.
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 8998776654321 1112245688999888889988888999999986
No 320
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.45 E-value=16 Score=30.77 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=64.6
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEE--eCCCCeEEEE-EeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVV--GPEGGLATQL-VTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~--d~~~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
.......+++ ++.+|++.......++ +..++..... .... .... .+..+.++|||.|+-+.....
T Consensus 66 ~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~-~~~~-~I~~l~vSpDG~RvA~v~~~~--------- 133 (253)
T PF10647_consen 66 GSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWP-GLRG-RITALRVSPDGTRVAVVVEDG--------- 133 (253)
T ss_pred CccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeEEeccc-ccCC-ceEEEEECCCCcEEEEEEecC---------
Confidence 3555677889 7999999886442222 2223333222 2221 1111 577899999999877765321
Q ss_pred hhhcCCCCceEEEE--eC-CCCeEEE------Ee-cCCcccceEEEecCCCeEEEEecCCceEEE-EEccCC
Q 046018 124 SILSGDKTGRLLKY--EK-TTKEVTI------LL-QGLAFANGVALSRDRTFILIAETSNCRILR-FWLHGP 184 (310)
Q Consensus 124 ~~~~~~~~g~v~~~--d~-~~~~~~~------~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~-~~~~~~ 184 (310)
..+.|+.- -. ..+.... +. ........++|.+++..++.+......+.. +..++.
T Consensus 134 ------~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 134 ------GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred ------CCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence 13444432 21 1220111 11 123345689999998855555555555666 666654
No 321
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=87.05 E-value=22 Score=31.75 Aligned_cols=145 Identities=10% Similarity=-0.005 Sum_probs=77.3
Q ss_pred cccceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEee--cCCccc-cCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018 44 HICGRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTE--AAGQPL-RFTNDLDIDEHKGVIYFTDSSTSFQRR 119 (310)
Q Consensus 44 ~~~~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~--~~~~~~-~~~~~i~~d~~g~~l~v~~~~~~~~~~ 119 (310)
...++...|.++. +++..+..... .+..++.+.....+..+. ..+.+. ..+.+++++...+ ..++..
T Consensus 54 ~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~------- 124 (609)
T KOG4227|consen 54 EHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGE------- 124 (609)
T ss_pred hhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCC-------
Confidence 3457888999988 66644443322 244455443221111111 012222 3466788888777 444432
Q ss_pred hhhhhhhcCCCCceEEEEeCCCCeEEEEecC---CcccceEEEecCCCeEEEEecCCceEEEEEccCC-CCCcceeeeeC
Q 046018 120 QFMSSILSGDKTGRLLKYEKTTKEVTILLQG---LAFANGVALSRDRTFILIAETSNCRILRFWLHGP-NSGKQDVFAEL 195 (310)
Q Consensus 120 ~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~-~~~~~~~~~~~ 195 (310)
..+.|.+-|.++.+..-+... -....++..+|-.+ .+++.+..+.|..||.... ..+...+.++.
T Consensus 125 ----------~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 125 ----------RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred ----------CcceeEeeecccceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 367888888876544333321 22356788888666 4455578889999988643 23333333333
Q ss_pred CCCCCeeEECCCC
Q 046018 196 PGFPDNVRSNSNG 208 (310)
Q Consensus 196 ~~~p~~i~~d~~G 208 (310)
+..-..+.+.|.-
T Consensus 194 ~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 194 GKNFYTAEFHPET 206 (609)
T ss_pred CccceeeeecCCC
Confidence 3222334455544
No 322
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=87.04 E-value=21 Score=31.65 Aligned_cols=117 Identities=9% Similarity=0.074 Sum_probs=68.6
Q ss_pred ccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEE-EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018 45 ICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQ-LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 45 ~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~ 122 (310)
......+|.++|....+++...-.+ |..+|.+.+.-+. +... .....+|-|....+-. +.++.
T Consensus 256 H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~k---Ah~sDVNVISWnr~~~-lLasG----------- 320 (440)
T KOG0302|consen 256 HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTK---AHNSDVNVISWNRREP-LLASG----------- 320 (440)
T ss_pred cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEee---ccCCceeeEEccCCcc-eeeec-----------
Confidence 3356678999986667777766555 7777877662211 1111 1112455555555544 33332
Q ss_pred hhhhcCCCCceEEEEeCCCCeEE----EEecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 123 SSILSGDKTGRLLKYEKTTKEVT----ILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 123 ~~~~~~~~~g~v~~~d~~~~~~~----~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
..+|.+-.||...-+.. .+..-......|.|.|.....+.+....++|.+||+.
T Consensus 321 ------~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 321 ------GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ------CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 24788888886422111 1111122346899999776677777778899999986
No 323
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=86.96 E-value=17 Score=30.38 Aligned_cols=115 Identities=11% Similarity=0.039 Sum_probs=58.4
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCC----cceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFT----NDLDIDEHKGVIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~----~~i~~d~~g~~l~v~~~~~~~~~~~~~ 122 (310)
...|-++.-..++.++-+...+-+..+|.++++-...+..+..+...+| .-.|++-+..++..+.
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg----------- 225 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG----------- 225 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-----------
Confidence 4566666533378888776555577789998887666554433222222 1244444444333322
Q ss_pred hhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 123 SSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
...+..|+...-+.+.+.+-.....-+.|..| .++++ -..+.|..|...|
T Consensus 226 --------Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~-G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 226 --------GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIG-GEGNHVQSYTLNG 275 (325)
T ss_pred --------CCceeEEeccCCCceEEEecccceeEeeeecc--eEEEe-ccccceeeeeecc
Confidence 22345555433334333322223345555543 23433 3346777776553
No 324
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=86.92 E-value=17 Score=30.53 Aligned_cols=85 Identities=15% Similarity=0.299 Sum_probs=50.4
Q ss_pred eEEEEeCCCCeEEEEec-------CCcccceEEEecCCC----eEEEEecCCceEEEEEccCCCCCcc--eeeee--CCC
Q 046018 133 RLLKYEKTTKEVTILLQ-------GLAFANGVALSRDRT----FILIAETSNCRILRFWLHGPNSGKQ--DVFAE--LPG 197 (310)
Q Consensus 133 ~v~~~d~~~~~~~~~~~-------~~~~~~gi~~~~d~~----~lyv~~~~~~~i~~~~~~~~~~~~~--~~~~~--~~~ 197 (310)
.+|.+|++.+.++.+.. ....+.|+++..+.+ .++|. ...+-|..|.+-.+..+.. ..+.+ ++.
T Consensus 127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~-~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~t 205 (364)
T COG4247 127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVN-RRQGDIAQYKLIDQGNGKVGTKLVRQFKIPT 205 (364)
T ss_pred EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEe-cCCCceeEEEEEecCCceEcceeeEeeecCC
Confidence 47888998776665442 234567999987644 23444 4557888887642111111 12222 344
Q ss_pred CCCeeEEC-CCCCEEEEEecCC
Q 046018 198 FPDNVRSN-SNGEFWVALHAKK 218 (310)
Q Consensus 198 ~p~~i~~d-~~G~l~va~~~~~ 218 (310)
...|+..| .-|.||++.-.-.
T Consensus 206 QTEG~VaDdEtG~LYIaeEdva 227 (364)
T COG4247 206 QTEGMVADDETGFLYIAEEDVA 227 (364)
T ss_pred cccceeeccccceEEEeeccce
Confidence 45666665 5589999986654
No 325
>smart00284 OLF Olfactomedin-like domains.
Probab=86.75 E-value=18 Score=30.54 Aligned_cols=109 Identities=12% Similarity=0.115 Sum_probs=59.0
Q ss_pred eEEEeCCCCcEEEEECC---Cc---eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 51 GIRFDKKTGDLYIADAY---LG---FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~---~g---i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
.+|+|. .-|||.=.. .| |.++|+.+-.+..........+....--|+| |. ||++.+..
T Consensus 132 DlAvDE--~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvC---Gv-LY~~~s~~---------- 195 (255)
T smart00284 132 DLAVDE--NGLWVIYATEQNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMIC---GI-LYVTRSLG---------- 195 (255)
T ss_pred EEEEcC--CceEEEEeccCCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEe---eE-EEEEccCC----------
Confidence 566664 568887432 24 5688998876655444321111111112332 55 99987531
Q ss_pred hhcCCCCce-EEEEeCCCCeEEEEe----cCCcccceEEEecCCCeEEEEecCCceEEEEEc
Q 046018 125 ILSGDKTGR-LLKYEKTTKEVTILL----QGLAFANGVALSRDRTFILIAETSNCRILRFWL 181 (310)
Q Consensus 125 ~~~~~~~g~-v~~~d~~~~~~~~~~----~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~ 181 (310)
....+ .+.||..+++.+.+. .....-..|...|-.+.||+= .++-+..|++
T Consensus 196 ----~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~w--dng~~l~Y~v 251 (255)
T smart00284 196 ----SKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAW--NNGHLVHYDI 251 (255)
T ss_pred ----CCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEE--eCCeEEEEEE
Confidence 12333 578998876544322 112223457788877778874 3455566654
No 326
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=86.74 E-value=16 Score=32.51 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=60.3
Q ss_pred eeceEEEeCCCCcEE-EEECCCce--EEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 48 RPLGIRFDKKTGDLY-IADAYLGF--QVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~-v~~~~~gi--~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
.+......+ +++|. +++...+. +.++.+....+ +...... -..++.+.+..+.....+++.
T Consensus 64 a~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~k-l~~~~~v--~~~~~ai~~~~~~~sv~v~dk------------ 127 (390)
T KOG3914|consen 64 APALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAK-LLDVSCV--PKRPTAISFIREDTSVLVADK------------ 127 (390)
T ss_pred cccccccCC-CceEEEEEeCCCceEEEEEecCCCcce-eeeEeec--ccCcceeeeeeccceEEEEee------------
Confidence 344455555 66654 44444553 33333222122 2222111 125777777776665777773
Q ss_pred hhcCCCCceEEEEeC---CCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 125 ILSGDKTGRLLKYEK---TTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~---~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
.|-++.+|. ..+..+........--.++++||+++++.+|.. ..|++.+..
T Consensus 128 ------agD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRD-EkIRvs~yp 181 (390)
T KOG3914|consen 128 ------AGDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRD-EKIRVSRYP 181 (390)
T ss_pred ------cCCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCC-ceEEEEecC
Confidence 444555543 224444433334556789999999988877654 566665543
No 327
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=86.49 E-value=21 Score=30.95 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=66.2
Q ss_pred CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCC-CeEEEEecCCcccceEEE-ecC-CCeEE-EEe
Q 046018 95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTT-KEVTILLQGLAFANGVAL-SRD-RTFIL-IAE 170 (310)
Q Consensus 95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~~~~~~~~~~~~gi~~-~~d-~~~ly-v~~ 170 (310)
+.+|.++++ +|.+.. .++++.|.-.+ -+.....+....|+|++- .|. ++.++ .-.
T Consensus 97 I~~V~l~r~--riVvvl-------------------~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg 155 (346)
T KOG2111|consen 97 IKAVKLRRD--RIVVVL-------------------ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG 155 (346)
T ss_pred eeeEEEcCC--eEEEEe-------------------cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC
Confidence 456666666 366665 56677776432 222233455667888754 333 23222 233
Q ss_pred cCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeec-cccccEEeeccc
Q 046018 171 TSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLN-SWLGKTLLKLPL 240 (310)
Q Consensus 171 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~-~~~g~~~~~~~~ 240 (310)
...+.|.+.++..........+..-.....-+++..+|.+..+....+.+ |.++ ..+|+.+.++.-
T Consensus 156 ~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTL----IRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 156 FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTL----IRIFDTEDGTLLQELRR 222 (346)
T ss_pred CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEE----EEEEEcCCCcEeeeeec
Confidence 34567777777532221111111111223568889999887766666654 5445 467888777643
No 328
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=85.93 E-value=4.3 Score=22.53 Aligned_cols=30 Identities=23% Similarity=0.168 Sum_probs=22.5
Q ss_pred CCcccceEEEecCCCeEEEEecCCceEEEEE
Q 046018 150 GLAFANGVALSRDRTFILIAETSNCRILRFW 180 (310)
Q Consensus 150 ~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~ 180 (310)
.....+.|+++|++. .+++...++.|.+||
T Consensus 10 h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 345578999999988 455556778998885
No 329
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=85.70 E-value=5.4 Score=35.58 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=17.0
Q ss_pred cccceEEEecCCCeEEEEec
Q 046018 152 AFANGVALSRDRTFILIAET 171 (310)
Q Consensus 152 ~~~~gi~~~~d~~~lyv~~~ 171 (310)
..|.-+.++-||++|||+++
T Consensus 389 GGPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 389 GGPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred CCceeEEeccCCcEEEEEch
Confidence 34778999999999999965
No 330
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=85.68 E-value=26 Score=31.30 Aligned_cols=151 Identities=9% Similarity=0.046 Sum_probs=82.7
Q ss_pred eceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcC
Q 046018 49 PLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSG 128 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~ 128 (310)
+--|+++..+..||-+..-..|..-|.++.+...++... . ......++.++|-.+ +++..+.
T Consensus 108 IF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~-~-~~~~VY~m~~~P~DN-~~~~~t~--------------- 169 (609)
T KOG4227|consen 108 IFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANEN-N-NRGDVYHMDQHPTDN-TLIVVTR--------------- 169 (609)
T ss_pred eEEEEEccCCeeEecCCCcceeEeeecccceeeeeeccc-C-cccceeecccCCCCc-eEEEEec---------------
Confidence 346888873334444433333666688876643333221 1 112466788888777 6655533
Q ss_pred CCCceEEEEeCCCCe----EEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCc--ceeeeeCCCCC---
Q 046018 129 DKTGRLLKYEKTTKE----VTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGK--QDVFAELPGFP--- 199 (310)
Q Consensus 129 ~~~g~v~~~d~~~~~----~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~p--- 199 (310)
.+.|..||..... ....+.-...-....|.|..-.|+.+....+++-+||..-+.... ...+..++...
T Consensus 170 --~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~ 247 (609)
T KOG4227|consen 170 --AKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEW 247 (609)
T ss_pred --CceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhh
Confidence 7788888854322 122222223334677888766677777777888888876321110 01112222211
Q ss_pred CeeEECCCCCEEEEEecCCc
Q 046018 200 DNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 200 ~~i~~d~~G~l~va~~~~~~ 219 (310)
.+..+.+.|+-+.+...+..
T Consensus 248 M~~~~~~~G~Q~msiRR~~~ 267 (609)
T KOG4227|consen 248 MGSLWSPSGNQFMSIRRGKC 267 (609)
T ss_pred hheeeCCCCCeehhhhccCC
Confidence 35677888877777666544
No 331
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=85.40 E-value=24 Score=30.78 Aligned_cols=105 Identities=13% Similarity=0.028 Sum_probs=59.2
Q ss_pred ceeceEEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
.....|.+..++-.+.-+...+ -|+.++...-+..--++. .......+..+|||+.|..++.-
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde----g~agls~~~WSPdgrhiL~tseF------------ 112 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE----GQAGLSSISWSPDGRHILLTSEF------------ 112 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc----CCCcceeeeECCCcceEeeeecc------------
Confidence 3444566655222222222223 366666654332211222 12245678899999867777643
Q ss_pred hcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecC
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETS 172 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~ 172 (310)
.-++-+|...+.+...+........|+++.|||++.-+++..
T Consensus 113 -----~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 113 -----DLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred -----eeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecc
Confidence 445666666555555444444456899999999977666543
No 332
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=85.26 E-value=8.1 Score=34.26 Aligned_cols=116 Identities=15% Similarity=0.217 Sum_probs=66.3
Q ss_pred ccceeceEEEeCCCCcEEEEECCCceEEEeCCC---CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhh
Q 046018 45 ICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEG---GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQF 121 (310)
Q Consensus 45 ~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~---~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~ 121 (310)
...+|..+.+...+-.+.|++..+.++.+|.-. +..+.+. .......+|++++|+++|..+| .
T Consensus 106 v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l-----GhvSml~dVavS~D~~~IitaD-R-------- 171 (390)
T KOG3914|consen 106 VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL-----GHVSMLLDVAVSPDDQFIITAD-R-------- 171 (390)
T ss_pred cccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhh-----hhhhhhheeeecCCCCEEEEec-C--------
Confidence 345677777776566777887765555554322 3222221 1234578999999999444444 2
Q ss_pred hhhhhcCCCCceEEEEeCCCCeEEEEec-CCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 122 MSSILSGDKTGRLLKYEKTTKEVTILLQ-GLAFANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
+..=+|.+|.. .-..+.+.- .-.+...|++.++ . ++++..+.+.|+.||...+
T Consensus 172 -------DEkIRvs~ypa-~f~IesfclGH~eFVS~isl~~~-~-~LlS~sGD~tlr~Wd~~sg 225 (390)
T KOG3914|consen 172 -------DEKIRVSRYPA-TFVIESFCLGHKEFVSTISLTDN-Y-LLLSGSGDKTLRLWDITSG 225 (390)
T ss_pred -------CceEEEEecCc-ccchhhhccccHhheeeeeeccC-c-eeeecCCCCcEEEEecccC
Confidence 11223444432 222222211 1234678888854 3 5777789999999998743
No 333
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=84.59 E-value=19 Score=34.88 Aligned_cols=145 Identities=10% Similarity=0.109 Sum_probs=81.6
Q ss_pred CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeE
Q 046018 2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLA 80 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~ 80 (310)
+.++..|+-|.+||-..+.=+ ..+..-.-....+.+.+..+..|++....| +..+|.+--.
T Consensus 149 liSGSQDg~vK~~DlR~~~S~-----------------~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~- 210 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSK-----------------STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD- 210 (839)
T ss_pred EEecCCCceEEEEeeeccccc-----------------ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch-
Confidence 456778888888887665200 111111234557888887888888888877 6777876322
Q ss_pred EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEE--ecCCcccceEE
Q 046018 81 TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTIL--LQGLAFANGVA 158 (310)
Q Consensus 81 ~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~--~~~~~~~~gi~ 158 (310)
+....... -..-...+-..|++ -|+++.+ +++.|..||..+.+.... .+....-..+.
T Consensus 211 -r~~~k~~A-H~GpV~c~nwhPnr--~~lATGG----------------RDK~vkiWd~t~~~~~~~~tInTiapv~rVk 270 (839)
T KOG0269|consen 211 -RCEKKLTA-HNGPVLCLNWHPNR--EWLATGG----------------RDKMVKIWDMTDSRAKPKHTINTIAPVGRVK 270 (839)
T ss_pred -hHHHHhhc-ccCceEEEeecCCC--ceeeecC----------------CCccEEEEeccCCCccceeEEeecceeeeee
Confidence 11110000 00012334456854 5666633 477788888765544322 22233345678
Q ss_pred EecCCCeEEEEec--CCceEEEEEccCC
Q 046018 159 LSRDRTFILIAET--SNCRILRFWLHGP 184 (310)
Q Consensus 159 ~~~d~~~lyv~~~--~~~~i~~~~~~~~ 184 (310)
|-|+....+.+.+ ..-.|++||...+
T Consensus 271 WRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 271 WRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred eccCccchhhhhhccccceEEEEeeccc
Confidence 8887665444322 3458999998643
No 334
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=83.93 E-value=9.1 Score=33.50 Aligned_cols=83 Identities=13% Similarity=0.102 Sum_probs=50.1
Q ss_pred CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCE
Q 046018 131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEF 210 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 210 (310)
+-++-.|+..+.++..... ....|||-..=..++.|+.+....|..|+...+. ..+.+..-......+.+|. -+|
T Consensus 339 DRTikvW~~st~efvRtl~--gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~--cLRvLeGHEeLvRciRFd~-krI 413 (499)
T KOG0281|consen 339 DRTIKVWSTSTCEFVRTLN--GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA--CLRVLEGHEELVRCIRFDN-KRI 413 (499)
T ss_pred CceEEEEeccceeeehhhh--cccccceehhccCeEEEecCCCceEEEEeccccH--HHHHHhchHHhhhheeecC-cee
Confidence 5568889988777665332 3456776655444589998889999999987431 1111111112345677765 346
Q ss_pred EEEEecCC
Q 046018 211 WVALHAKK 218 (310)
Q Consensus 211 ~va~~~~~ 218 (310)
.-+.+++.
T Consensus 414 VSGaYDGk 421 (499)
T KOG0281|consen 414 VSGAYDGK 421 (499)
T ss_pred eeccccce
Confidence 55565554
No 335
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=83.57 E-value=23 Score=31.47 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=42.0
Q ss_pred CCCCceEEEEeCCCCeEEEEecCC----cccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 128 GDKTGRLLKYEKTTKEVTILLQGL----AFANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~~~~~~~~~----~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
++-...++.|.+.++.+++-...+ ....+++++|..+.++.+-+-.+.|.+||.+.+
T Consensus 230 GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~ 290 (440)
T KOG0302|consen 230 GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSG 290 (440)
T ss_pred CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCC
Confidence 344566888888888776532221 234689999988889998888999999999854
No 336
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=83.54 E-value=28 Score=30.02 Aligned_cols=164 Identities=21% Similarity=0.201 Sum_probs=89.5
Q ss_pred EeccccccccCCCCCccc---cccceeceEEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC
Q 046018 26 VTTSQRKECVRPFAPDIE---HICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE 102 (310)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~---~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 102 (310)
-+||..+|..++.-+.+. ...+...+..++ .+..||++...|+..+|..+..-.++...... +....++++++
T Consensus 105 ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~-~~~d~~~v~IS- 180 (370)
T COG5276 105 SSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PGGDTHDVAIS- 180 (370)
T ss_pred CCceEEEeccCCCCcceeccccCCceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeecc-CCCCceeEEEe-
Confidence 345555554332212222 222455577775 46899999888888887665543344333222 22234677776
Q ss_pred CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC---CcccceEEEecCCCeEEEEecCCceEEEE
Q 046018 103 HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG---LAFANGVALSRDRTFILIAETSNCRILRF 179 (310)
Q Consensus 103 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~---~~~~~gi~~~~d~~~lyv~~~~~~~i~~~ 179 (310)
|++.|++. .++.+..+|.....-.++... .+...++..++ ++.|++. .+..|...
T Consensus 181 -Gn~AYvA~------------------~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd--nr~y~vv-y~egvliv 238 (370)
T COG5276 181 -GNYAYVAW------------------RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD--NRAYLVV-YDEGVLIV 238 (370)
T ss_pred -cCeEEEEE------------------eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC--CeeEEEE-cccceEEE
Confidence 44689886 256677787654332222211 12334444443 3477774 45678888
Q ss_pred EccCCCCCcceeeee-CCCCCCee---EECCCCCEEEEEecCC
Q 046018 180 WLHGPNSGKQDVFAE-LPGFPDNV---RSNSNGEFWVALHAKK 218 (310)
Q Consensus 180 ~~~~~~~~~~~~~~~-~~~~p~~i---~~d~~G~l~va~~~~~ 218 (310)
|.++. .+...+.. .+..|.++ .+ ++...|++....+
T Consensus 239 d~s~~--ssp~~~gsyet~~p~~~s~v~V-s~~~~Yvadga~g 278 (370)
T COG5276 239 DVSGP--SSPTVFGSYETSNPVSISTVPV-SGEYAYVADGAKG 278 (370)
T ss_pred ecCCC--CCceEeeccccCCcccccceec-ccceeeeeccccC
Confidence 77653 23344433 22334443 44 4567888887654
No 337
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=82.86 E-value=30 Score=29.79 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=55.2
Q ss_pred CCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCccee-----------ee-e--
Q 046018 130 KTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDV-----------FA-E-- 194 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~-----------~~-~-- 194 (310)
..-.|..+|.++|.+.....+. ...-.+.|+|...+++.+.+..++|..||+... .+.... +. +
T Consensus 166 r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra-sgcf~~lD~hn~k~~p~~~~n~a 244 (397)
T KOG4283|consen 166 RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA-SGCFRVLDQHNTKRPPILKTNTA 244 (397)
T ss_pred CCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc-cceeEEeecccCccCcccccccc
Confidence 3557888999989887544332 234567889988888888888889999988621 011111 11 1
Q ss_pred CCCCCCeeEECCCC-CEEEEEecCC
Q 046018 195 LPGFPDNVRSNSNG-EFWVALHAKK 218 (310)
Q Consensus 195 ~~~~p~~i~~d~~G-~l~va~~~~~ 218 (310)
-.+..+++++.++| .+|....+++
T Consensus 245 h~gkvngla~tSd~~~l~~~gtd~r 269 (397)
T KOG4283|consen 245 HYGKVNGLAWTSDARYLASCGTDDR 269 (397)
T ss_pred ccceeeeeeecccchhhhhccCccc
Confidence 01334778998888 4555544444
No 338
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=82.72 E-value=45 Score=31.70 Aligned_cols=158 Identities=14% Similarity=0.118 Sum_probs=88.4
Q ss_pred eccccccccCCCCCc--cccccceeceEEEeCCCCcEEEEEC-CCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCC
Q 046018 27 TTSQRKECVRPFAPD--IEHICGRPLGIRFDKKTGDLYIADA-YLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEH 103 (310)
Q Consensus 27 ~~~~~~~~~~~~~~~--~~~~~~~p~gl~~d~~~g~l~v~~~-~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~ 103 (310)
..|+.+++.+.++.. +....+...++++.. .+.+++... ..-+..+|..++..+..... ....+.+...
T Consensus 228 ~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g-------h~stv~~~~~ 299 (537)
T KOG0274|consen 228 STLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQG-------HTSSVRCLTI 299 (537)
T ss_pred ceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecC-------CCceEEEEEc
Confidence 344455554422211 233346677888875 344444444 44588889888887765432 2333444444
Q ss_pred CCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC-cccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 104 KGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL-AFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 104 g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~-~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
+....++.+ .+..|..|+.++++...+..+. ...+.+.++ +. +.|+.+..+.|.+|++.
T Consensus 300 ~~~~~~sgs-----------------~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 300 DPFLLVSGS-----------------RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPR 359 (537)
T ss_pred cCceEeecc-----------------CCceEEEEeccCcceEEEeccccccEEEEEec--CC-EEEEEecCceEEEEEhh
Confidence 441333322 3678999998877776655432 234666666 44 55666778899999976
Q ss_pred CCCCCcceeeeeCC---CCCCeeEECCCCCEEEEEecC
Q 046018 183 GPNSGKQDVFAELP---GFPDNVRSNSNGEFWVALHAK 217 (310)
Q Consensus 183 ~~~~~~~~~~~~~~---~~p~~i~~d~~G~l~va~~~~ 217 (310)
.. +.+..+. +....+.++....++-+..+.
T Consensus 360 ~~-----~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~ 392 (537)
T KOG0274|consen 360 TG-----KCLKSLSGHTGRVYSLIVDSENRLLSGSLDT 392 (537)
T ss_pred hc-----eeeeeecCCcceEEEEEecCcceEEeeeecc
Confidence 32 2333332 233456676654455555553
No 339
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=82.58 E-value=61 Score=33.16 Aligned_cols=115 Identities=12% Similarity=0.079 Sum_probs=70.0
Q ss_pred eeceEEEeCCCCcEEEEECCCc---eEEEeCC--CCeEEEEEeecCC---ccccCCcceEEeCCCCEEEEEeCCCchhhh
Q 046018 48 RPLGIRFDKKTGDLYIADAYLG---FQVVGPE--GGLATQLVTEAAG---QPLRFTNDLDIDEHKGVIYFTDSSTSFQRR 119 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~g---i~~~d~~--~~~~~~~~~~~~~---~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~ 119 (310)
...+.++|..++.+|++..... ...++.. ......++..... .+...+-++..-++...++++.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~-------- 94 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIAL-------- 94 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEE--------
Confidence 3456777876778888877532 2333221 1222334333211 1223445555556655466665
Q ss_pred hhhhhhhcCCCCceEEEE----eCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEc
Q 046018 120 QFMSSILSGDKTGRLLKY----EKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWL 181 (310)
Q Consensus 120 ~~~~~~~~~~~~g~v~~~----d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~ 181 (310)
..|.|+.+ ++++...+.+..-..+..+++|+||+..|.++ ++.+.|.....
T Consensus 95 ----------~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~v-T~~~~l~~mt~ 149 (928)
T PF04762_consen 95 ----------ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALV-TGEGNLLLMTR 149 (928)
T ss_pred ----------CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEE-eCCCEEEEEec
Confidence 36778888 77777788776656678899999999966665 66777777653
No 340
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.64 E-value=41 Score=30.51 Aligned_cols=153 Identities=9% Similarity=0.082 Sum_probs=79.6
Q ss_pred ccccceeceEEEeCCCCcEEEEECCCc-eEEEeCCC-CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhh
Q 046018 43 EHICGRPLGIRFDKKTGDLYIADAYLG-FQVVGPEG-GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQ 120 (310)
Q Consensus 43 ~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~ 120 (310)
....+..+.+.+.+....+.+.....+ +...|.+. ......... ......++.++.....+++..
T Consensus 283 ~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~-----~g~VEkv~w~~~se~~f~~~t-------- 349 (463)
T KOG0270|consen 283 THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF-----DGEVEKVAWDPHSENSFFVST-------- 349 (463)
T ss_pred hhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe-----ccceEEEEecCCCceeEEEec--------
Confidence 344466778888886777766666544 55555542 110001110 012444566654432333332
Q ss_pred hhhhhhcCCCCceEEEEeCCCC-eEE-EEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC-CC
Q 046018 121 FMSSILSGDKTGRLLKYEKTTK-EVT-ILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL-PG 197 (310)
Q Consensus 121 ~~~~~~~~~~~g~v~~~d~~~~-~~~-~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~ 197 (310)
.+|.|+.+|...- +.. .+..-.....||++++.-..+.++.+..+.|..|+.+....+... ...+ -+
T Consensus 350 ---------ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~-~~~~~~~ 419 (463)
T KOG0270|consen 350 ---------DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK-EHSFKLG 419 (463)
T ss_pred ---------CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc-ccccccc
Confidence 3778888875322 111 111122356899999877668888788888888887643221110 0111 12
Q ss_pred CCCeeEECCCCCEEEEEecCC
Q 046018 198 FPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 198 ~p~~i~~d~~G~l~va~~~~~ 218 (310)
.-..++.+++--.+.+..+..
T Consensus 420 rl~c~~~~~~~a~~la~GG~k 440 (463)
T KOG0270|consen 420 RLHCFALDPDVAFTLAFGGEK 440 (463)
T ss_pred ceeecccCCCcceEEEecCcc
Confidence 234556666665555554433
No 341
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.16 E-value=52 Score=31.42 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=33.6
Q ss_pred CcccccCcEEEEEeCCCCCeEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc
Q 046018 2 PYTGVADGRILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG 69 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g 69 (310)
.+++.+|-.|..|+=+.. |- |. +.++........+++.|++.+-++...-++
T Consensus 112 vLtsSDDm~iKlW~we~~-wa-----------~~----qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 112 VLTSSDDMTIKLWDWENE-WA-----------CE----QTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred EEecCCccEEEEeeccCc-ee-----------ee----eEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 456777777888877543 64 11 233444456668999998888787766554
No 342
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=81.15 E-value=11 Score=35.30 Aligned_cols=69 Identities=10% Similarity=0.101 Sum_probs=50.6
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN 173 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~ 173 (310)
.+...+.+|+...+.++= .+|.|..||...+..+ .....-.|.-++|.|+|..+.| .+..
T Consensus 261 ~v~~ca~sp~E~kLvlGC------------------~DgSiiLyD~~~~~t~-~~ka~~~P~~iaWHp~gai~~V-~s~q 320 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGC------------------EDGSIILYDTTRGVTL-LAKAEFIPTLIAWHPDGAIFVV-GSEQ 320 (545)
T ss_pred cceEEecCcccceEEEEe------------------cCCeEEEEEcCCCeee-eeeecccceEEEEcCCCcEEEE-EcCC
Confidence 466777888887455554 3788999998765333 3344456999999999984444 4678
Q ss_pred ceEEEEEcc
Q 046018 174 CRILRFWLH 182 (310)
Q Consensus 174 ~~i~~~~~~ 182 (310)
+.|..||+.
T Consensus 321 GelQ~FD~A 329 (545)
T PF11768_consen 321 GELQCFDMA 329 (545)
T ss_pred ceEEEEEee
Confidence 999999986
No 343
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=80.89 E-value=32 Score=28.86 Aligned_cols=145 Identities=13% Similarity=0.154 Sum_probs=68.9
Q ss_pred eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCC----CeEE
Q 046018 70 FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTT----KEVT 145 (310)
Q Consensus 70 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~----~~~~ 145 (310)
-..+|+.+++++.+... . -.+..+-++.+||+ +.++.-.. .....+..|++.+ ..+.
T Consensus 48 s~~yD~~tn~~rpl~v~-t---d~FCSgg~~L~dG~-ll~tGG~~--------------~G~~~ir~~~p~~~~~~~~w~ 108 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ-T---DTFCSGGAFLPDGR-LLQTGGDN--------------DGNKAIRIFTPCTSDGTCDWT 108 (243)
T ss_pred EEEEecCCCcEEeccCC-C---CCcccCcCCCCCCC-EEEeCCCC--------------ccccceEEEecCCCCCCCCce
Confidence 34568888887655221 1 12344456778999 66654221 0122355666643 1222
Q ss_pred EEecCCccc---ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcce--eeeeC-CCCCCe----eEECCCCCEEEEEe
Q 046018 146 ILLQGLAFA---NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQD--VFAEL-PGFPDN----VRSNSNGEFWVALH 215 (310)
Q Consensus 146 ~~~~~~~~~---~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~--~~~~~-~~~p~~----i~~d~~G~l~va~~ 215 (310)
.....+..+ .....-+||+.+++..+.+.....+........... .+... ...+.+ +.+-++|+|++..+
T Consensus 109 e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an 188 (243)
T PF07250_consen 109 ESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN 188 (243)
T ss_pred ECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc
Confidence 111122221 133445699966666555434333322111111111 11111 012233 56779999999887
Q ss_pred cCCccceeeeeeccccccEEeecc
Q 046018 216 AKKGLFGKLILLNSWLGKTLLKLP 239 (310)
Q Consensus 216 ~~~~~~~~~i~~~~~~g~~~~~~~ 239 (310)
... ++.+....+.+..+|
T Consensus 189 ~~s------~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 189 RGS------IIYDYKTNTVVRTLP 206 (243)
T ss_pred CCc------EEEeCCCCeEEeeCC
Confidence 655 444444444545543
No 344
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.80 E-value=9.7 Score=38.30 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=65.1
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecC----CcccceEEEecCCCeEEEE
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQG----LAFANGVALSRDRTFILIA 169 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~----~~~~~gi~~~~d~~~lyv~ 169 (310)
.+.++-+.+.+. -+.+.. ..+|.|+.||...- -+....+ ......++|...-.+++.+
T Consensus 118 ~V~gLDfN~~q~-nlLASG----------------a~~geI~iWDlnn~-~tP~~~~~~~~~~eI~~lsWNrkvqhILAS 179 (1049)
T KOG0307|consen 118 PVLGLDFNPFQG-NLLASG----------------ADDGEILIWDLNKP-ETPFTPGSQAPPSEIKCLSWNRKVSHILAS 179 (1049)
T ss_pred ceeeeeccccCC-ceeecc----------------CCCCcEEEeccCCc-CCCCCCCCCCCcccceEeccchhhhHHhhc
Confidence 355677777766 444442 24889999998641 1222221 1224567888776678887
Q ss_pred ecCCceEEEEEccCCCCCcceeeeeCCC--CCCeeEECCCC--CEEEEEecCCcc
Q 046018 170 ETSNCRILRFWLHGPNSGKQDVFAELPG--FPDNVRSNSNG--EFWVALHAKKGL 220 (310)
Q Consensus 170 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~p~~i~~d~~G--~l~va~~~~~~~ 220 (310)
.+.+++..+||++..+ ..-.+...++ .-..+++.+++ +|++|..+.+..
T Consensus 180 ~s~sg~~~iWDlr~~~--pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKKK--PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred cCCCCCceeccccCCC--cccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 7778899999987431 1111222111 12468888888 799988776643
No 345
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.71 E-value=56 Score=33.38 Aligned_cols=150 Identities=12% Similarity=0.036 Sum_probs=78.3
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEE---EEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQ---LVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~---~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~ 122 (310)
..+..|..+-..|++.++...+| |..+|.+...... ........+ .+.++.+-+.|-.=.|+.+
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~--~Iv~~slq~~G~~elvSgs---------- 1276 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE--PIVHLSLQRQGLGELVSGS---------- 1276 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc--cceeEEeecCCCcceeeec----------
Confidence 45667776655678888888866 6666765432211 111111111 1445555554432133332
Q ss_pred hhhhcCCCCceEEEEeCCCCeEEEEec----C--CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcce---eee
Q 046018 123 SSILSGDKTGRLLKYEKTTKEVTILLQ----G--LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQD---VFA 193 (310)
Q Consensus 123 ~~~~~~~~~g~v~~~d~~~~~~~~~~~----~--~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~---~~~ 193 (310)
.+|.|..+|+.....+.... - ...-..+.+.++-. ++.+.+. +.|.+|+..|.+..... .|.
T Consensus 1277 -------~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1277 -------QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGSA-QLIKIYSLSGEQLNIIKYNPGFM 1347 (1387)
T ss_pred -------cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecCc-ceEEEEecChhhhcccccCcccc
Confidence 37889999876422221111 0 11134577777665 6666554 89999999876443332 121
Q ss_pred e-CCCCCCeeEECCCCCEEEEEecC
Q 046018 194 E-LPGFPDNVRSNSNGEFWVALHAK 217 (310)
Q Consensus 194 ~-~~~~p~~i~~d~~G~l~va~~~~ 217 (310)
. .-+.+..+++.|---+.++.+..
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCC
Confidence 1 11345667777766554444333
No 346
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=80.30 E-value=55 Score=31.13 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=73.1
Q ss_pred ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe
Q 046018 69 GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL 148 (310)
Q Consensus 69 gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 148 (310)
-|.+++.++++...+... ....++.|..+ +. +.|+.+. ++.|..|++.++++....
T Consensus 312 tVkVW~v~n~~~l~l~~~----h~~~V~~v~~~--~~-~lvsgs~-----------------d~~v~VW~~~~~~cl~sl 367 (537)
T KOG0274|consen 312 TVKVWDVTNGACLNLLRG----HTGPVNCVQLD--EP-LLVSGSY-----------------DGTVKVWDPRTGKCLKSL 367 (537)
T ss_pred eEEEEeccCcceEEEecc----ccccEEEEEec--CC-EEEEEec-----------------CceEEEEEhhhceeeeee
Confidence 477778887765544332 12246677776 55 4444432 678999999877765543
Q ss_pred cCCc-ccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCC---CCCCeeEECCCCCEEEEEecCCccceee
Q 046018 149 QGLA-FANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELP---GFPDNVRSNSNGEFWVALHAKKGLFGKL 224 (310)
Q Consensus 149 ~~~~-~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~G~l~va~~~~~~~~~~~ 224 (310)
.+.. ....+.++.. . .+++.+.+..|..||+.++. +....+. .....+.+ .++++++....+.
T Consensus 368 ~gH~~~V~sl~~~~~-~-~~~Sgs~D~~IkvWdl~~~~----~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~----- 434 (537)
T KOG0274|consen 368 SGHTGRVYSLIVDSE-N-RLLSGSLDTTIKVWDLRTKR----KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT----- 434 (537)
T ss_pred cCCcceEEEEEecCc-c-eEEeeeeccceEeecCCchh----hhhhhhcCCccccccccc--ccceeEecccccc-----
Confidence 3322 2345555543 4 34455666889999987541 1111111 11222222 3556666555553
Q ss_pred eeec-cccccEEeeccc
Q 046018 225 ILLN-SWLGKTLLKLPL 240 (310)
Q Consensus 225 i~~~-~~~g~~~~~~~~ 240 (310)
|..+ ..+++.++.+..
T Consensus 435 Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEG 451 (537)
T ss_pred EEEeecccCceeeeecc
Confidence 3333 345666665554
No 347
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=80.20 E-value=38 Score=30.64 Aligned_cols=109 Identities=11% Similarity=0.047 Sum_probs=59.4
Q ss_pred eeceEEEeCCCCcEEEEECC------------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCc
Q 046018 48 RPLGIRFDKKTGDLYIADAY------------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTS 115 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~------------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~ 115 (310)
+.+.+++.+ .|.||+-... ..++.+|..+.+.+++... .++....-+.|++-... .|.++.-+..
T Consensus 123 sshq~va~~-s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~-g~PS~RSGHRMvawK~~-lilFGGFhd~ 199 (521)
T KOG1230|consen 123 SSHQAVAVP-SNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG-GGPSPRSGHRMVAWKRQ-LILFGGFHDS 199 (521)
T ss_pred ccceeEEec-cCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC-CCCCCCccceeEEeeee-EEEEcceecC
Confidence 445666667 7889886532 2378888888887776332 22222233445544433 2555442211
Q ss_pred hhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc-----ceEEEecCCCeEEE
Q 046018 116 FQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA-----NGVALSRDRTFILI 168 (310)
Q Consensus 116 ~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~-----~gi~~~~d~~~lyv 168 (310)
.+.+. .-+-||.||.++=++..+......| ..+..+|++..+++
T Consensus 200 --nr~y~-------YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vy 248 (521)
T KOG1230|consen 200 --NRDYI-------YYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVY 248 (521)
T ss_pred --CCceE-------EeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEE
Confidence 00000 1334889999877776665433223 35677788884433
No 348
>PLN02153 epithiospecifier protein
Probab=79.90 E-value=42 Score=29.58 Aligned_cols=117 Identities=14% Similarity=0.040 Sum_probs=59.3
Q ss_pred CCcEEEEECC------CceEEEeCCCCeEEEEEeec-CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018 58 TGDLYIADAY------LGFQVVGPEGGLATQLVTEA-AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK 130 (310)
Q Consensus 58 ~g~l~v~~~~------~gi~~~d~~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~ 130 (310)
+++||+.... ..++++|+.+.+.+.+.... ...+.......++.-+++ ||+..-...-.. ......
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~-iyv~GG~~~~~~------~~~~~~ 157 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENH-VYVFGGVSKGGL------MKTPER 157 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCE-EEEECCccCCCc------cCCCcc
Confidence 5688887543 13888999988776553211 011211222333444566 887653210000 000001
Q ss_pred CceEEEEeCCCCeEEEEecCCc--cc---ceEEEecCCCeEEEEec-------------CCceEEEEEccC
Q 046018 131 TGRLLKYEKTTKEVTILLQGLA--FA---NGVALSRDRTFILIAET-------------SNCRILRFWLHG 183 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~--~~---~gi~~~~d~~~lyv~~~-------------~~~~i~~~~~~~ 183 (310)
...|..||+++.+.+.+..... .+ .+++. -+++ +|+..- ..+.|++||+..
T Consensus 158 ~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~-iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~ 226 (341)
T PLN02153 158 FRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGK-IWVVYGFATSILPGGKSDYESNAVQFFDPAS 226 (341)
T ss_pred cceEEEEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCe-EEEEeccccccccCCccceecCceEEEEcCC
Confidence 2358899999888876543211 11 23333 3555 777421 135788898764
No 349
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=79.30 E-value=43 Score=29.37 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=47.5
Q ss_pred CceEEEEeCCCCeEE-EEecCCcccceEEEecC-CCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC--
Q 046018 131 TGRLLKYEKTTKEVT-ILLQGLAFANGVALSRD-RTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS-- 206 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~-~~~~~~~~~~gi~~~~d-~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~-- 206 (310)
+|.|..||+.++..- .+.......|++.|..+ .-+.+.+.+..+.|..||.+.........+...++.| -+++|.
T Consensus 49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~-f~~ld~nc 127 (376)
T KOG1188|consen 49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP-FICLDLNC 127 (376)
T ss_pred CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc-ceEeeccC
Confidence 778999999876443 23222334689988764 3334445567789999998743222222333333223 344544
Q ss_pred CCCEEEEE
Q 046018 207 NGEFWVAL 214 (310)
Q Consensus 207 ~G~l~va~ 214 (310)
++++..+.
T Consensus 128 k~~ii~~G 135 (376)
T KOG1188|consen 128 KKNIIACG 135 (376)
T ss_pred cCCeEEec
Confidence 56676554
No 350
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=78.62 E-value=7 Score=36.99 Aligned_cols=52 Identities=10% Similarity=0.068 Sum_probs=36.2
Q ss_pred CceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 131 TGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
+-.|-.||..+++... +...-...-+++|+|||+ +..+-...++|.+|++..
T Consensus 699 d~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 699 DSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred cceeeeeehhhhhhhheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCC
Confidence 4567777776654332 222334567999999999 555557889999999874
No 351
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=78.59 E-value=7.8 Score=21.70 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=14.4
Q ss_pred ccceEEEecCCCeEEEEecCC
Q 046018 153 FANGVALSRDRTFILIAETSN 173 (310)
Q Consensus 153 ~~~gi~~~~d~~~lyv~~~~~ 173 (310)
.-...+++|||+.|+++....
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT
T ss_pred cccCEEEecCCCEEEEEecCC
Confidence 345678999999887775544
No 352
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=78.18 E-value=46 Score=29.09 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=63.1
Q ss_pred CCcEEEEECC-Cc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEE
Q 046018 58 TGDLYIADAY-LG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLL 135 (310)
Q Consensus 58 ~g~l~v~~~~-~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~ 135 (310)
++..+++-.+ .| |..+|+..+++..-.. + -...+|.|...|+.-.+.++.+. +..|-
T Consensus 103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~---g-hG~sINeik~~p~~~qlvls~Sk-----------------D~svR 161 (385)
T KOG1034|consen 103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYR---G-HGGSINEIKFHPDRPQLVLSASK-----------------DHSVR 161 (385)
T ss_pred CCCeeEEeecceeEEEEEecchhhhcccee---c-cCccchhhhcCCCCCcEEEEecC-----------------CceEE
Confidence 3454444443 45 6677888776543222 1 12368888888876437766643 66788
Q ss_pred EEeCCCCeEEEEecCCcc----cceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 136 KYEKTTKEVTILLQGLAF----ANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 136 ~~d~~~~~~~~~~~~~~~----~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
.||.++.....+..+... .-.+-++.|+.+ +++.-...+|-.|+++
T Consensus 162 lwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~-i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 162 LWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDR-IASCGMDHSLKLWRLN 211 (385)
T ss_pred EEeccCCeEEEEecccccccCcEEEEEEcCCCCe-eeccCCcceEEEEecC
Confidence 899888777666544333 224667778874 3343456677777776
No 353
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=78.13 E-value=46 Score=28.96 Aligned_cols=119 Identities=13% Similarity=0.155 Sum_probs=66.2
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE--EecCC-cccceEEEecCCCeEEEEe
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI--LLQGL-AFANGVALSRDRTFILIAE 170 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~--~~~~~-~~~~gi~~~~d~~~lyv~~ 170 (310)
..++....|..+ |.++.+. +-....||.. ...+. +..+. .......|..|.+ +|+.
T Consensus 316 ELtHcstHptQr-LVvTsSr-----------------DtTFRLWDFR-eaI~sV~VFQGHtdtVTS~vF~~dd~--vVSg 374 (481)
T KOG0300|consen 316 ELTHCSTHPTQR-LVVTSSR-----------------DTTFRLWDFR-EAIQSVAVFQGHTDTVTSVVFNTDDR--VVSG 374 (481)
T ss_pred hccccccCCcce-EEEEecc-----------------CceeEeccch-hhcceeeeecccccceeEEEEecCCc--eeec
Confidence 356677788888 9988764 3333344432 11221 11111 1234566777765 5677
Q ss_pred cCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeeccccccEEeeccc
Q 046018 171 TSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPL 240 (310)
Q Consensus 171 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~ 240 (310)
+....|-+||+......-..+.. ....+.+++...+.|..--.++++ +..|+..|..+.++|-
T Consensus 375 SDDrTvKvWdLrNMRsplATIRt--dS~~NRvavs~g~~iIAiPhDNRq-----vRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMRSPLATIRT--DSPANRVAVSKGHPIIAIPHDNRQ-----VRLFDLNGNRLARLPR 437 (481)
T ss_pred CCCceEEEeeeccccCcceeeec--CCccceeEeecCCceEEeccCCce-----EEEEecCCCccccCCc
Confidence 88899999998753221111111 122356777664545444445554 6777777887777663
No 354
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=77.65 E-value=8.9 Score=32.30 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=49.0
Q ss_pred EEEEeCCCCeEEE---EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCE
Q 046018 134 LLKYEKTTKEVTI---LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEF 210 (310)
Q Consensus 134 v~~~d~~~~~~~~---~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l 210 (310)
.+.++-+++.++. .....++.+|+.+-||++ ++.+.-++++|.+|...... ...++.--.+..+.+++.++-+|
T Consensus 231 ~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~--pLAVLkyHsagvn~vAfspd~~l 307 (323)
T KOG0322|consen 231 MYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLN--PLAVLKYHSAGVNAVAFSPDCEL 307 (323)
T ss_pred eeeeccccCcccccceEEecCCCccceEEccCCc-EEeecccCCcEEEEEeccCC--chhhhhhhhcceeEEEeCCCCch
Confidence 4455555555543 112345568999999999 77777889999999876421 11222111134567888887556
Q ss_pred EEEEecC
Q 046018 211 WVALHAK 217 (310)
Q Consensus 211 ~va~~~~ 217 (310)
..+....
T Consensus 308 mAaaskD 314 (323)
T KOG0322|consen 308 MAAASKD 314 (323)
T ss_pred hhhccCC
Confidence 5554443
No 355
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.35 E-value=13 Score=34.47 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=62.2
Q ss_pred EEEECCCceEEEeCCCCeEEEE-EeecCC-ccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeC
Q 046018 62 YIADAYLGFQVVGPEGGLATQL-VTEAAG-QPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEK 139 (310)
Q Consensus 62 ~v~~~~~gi~~~d~~~~~~~~~-~~~~~~-~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 139 (310)
+++-...+|+++||+-.-...+ +..... ......++++...+|. |.|+. ..|-|..||.
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~-IvvgS------------------~~GdIRLYdr 458 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGY-IVVGS------------------LKGDIRLYDR 458 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCce-EEEee------------------cCCcEEeehh
Confidence 4555556799999873221111 111100 1123456777888887 88887 3677888988
Q ss_pred CCCeEEEEecCCccc-ceEEEecCCCeEEEEecCCceEEEEEc
Q 046018 140 TTKEVTILLQGLAFA-NGVALSRDRTFILIAETSNCRILRFWL 181 (310)
Q Consensus 140 ~~~~~~~~~~~~~~~-~gi~~~~d~~~lyv~~~~~~~i~~~~~ 181 (310)
-..++++..++++.| .+|..+.||++++.+ +. ..|..++.
T Consensus 459 i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~-tyLlLi~t 499 (644)
T KOG2395|consen 459 IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CK-TYLLLIDT 499 (644)
T ss_pred hhhhhhhcccccCCceeeEEeeccCcEEEEe-cc-cEEEEEEE
Confidence 655666667776664 789999999976554 33 46666654
No 356
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=77.21 E-value=76 Score=31.01 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=45.9
Q ss_pred cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC----cccceEEEecCCCeEEE
Q 046018 93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL----AFANGVALSRDRTFILI 168 (310)
Q Consensus 93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~----~~~~gi~~~~d~~~lyv 168 (310)
....+|++||.-+ +.++.-. +-.|-.||.++|+.+....+- +.+--+.++|.| +|+
T Consensus 597 tTlYDm~Vdp~~k-~v~t~cQ-----------------Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg--iY~ 656 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSK-LVVTVCQ-----------------DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG--IYL 656 (1080)
T ss_pred ceEEEeeeCCCcc-eEEEEec-----------------ccceEEEeccccceeeeecccccCCCceEEEEECCCc--cEE
Confidence 3578999999988 5555422 445778888877766544322 223456778777 455
Q ss_pred E-ecCCceEEEEEccC
Q 046018 169 A-ETSNCRILRFWLHG 183 (310)
Q Consensus 169 ~-~~~~~~i~~~~~~~ 183 (310)
+ ...+..|-.||.-.
T Consensus 657 atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 657 ATSCSDKTLCFVDFVS 672 (1080)
T ss_pred EEeecCCceEEEEecc
Confidence 4 34567888888753
No 357
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=76.97 E-value=83 Score=31.39 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=43.5
Q ss_pred ceEEeCCCCEEEEEeCCC---chhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCC----------cccceEEEec-C
Q 046018 97 DLDIDEHKGVIYFTDSST---SFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGL----------AFANGVALSR-D 162 (310)
Q Consensus 97 ~i~~d~~g~~l~v~~~~~---~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~----------~~~~gi~~~~-d 162 (310)
-+++|++...+|+..... .|...+... .....+.|+.+|++||+.+-..... ..|.=+.+.. +
T Consensus 379 ~~s~D~~~glvy~ptGn~~pd~~g~~r~~~---~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~ 455 (764)
T TIGR03074 379 VASYDEKLGLVYLPMGNQTPDQWGGDRTPA---DEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDAD 455 (764)
T ss_pred ceEEcCCCCeEEEeCCCccccccCCccccC---cccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCC
Confidence 567888876578765321 111100000 1123678999999999877533211 1122122222 4
Q ss_pred CC---eEEEEecCCceEEEEEccC
Q 046018 163 RT---FILIAETSNCRILRFWLHG 183 (310)
Q Consensus 163 ~~---~lyv~~~~~~~i~~~~~~~ 183 (310)
|+ .++. -+.++.++.+|.++
T Consensus 456 G~~~~~v~~-~~K~G~~~vlDr~t 478 (764)
T TIGR03074 456 GTTVPALVA-PTKQGQIYVLDRRT 478 (764)
T ss_pred CcEeeEEEE-ECCCCEEEEEECCC
Confidence 52 3444 36777888888764
No 358
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=75.56 E-value=11 Score=34.35 Aligned_cols=84 Identities=13% Similarity=0.213 Sum_probs=49.2
Q ss_pred CCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECC
Q 046018 128 GDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNS 206 (310)
Q Consensus 128 ~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~ 206 (310)
++..|.|..|.|...+.-. +..-.+..++|+++++|+++. +.-.++.+-+||+..-. ....+. .|-....+.++.
T Consensus 269 GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMa-TtG~Dr~~kIWDlR~~~--ql~t~~-tp~~a~~ls~Sq 344 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMA-TTGLDRKVKIWDLRNFY--QLHTYR-TPHPASNLSLSQ 344 (545)
T ss_pred cCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEe-ecccccceeEeeecccc--ccceee-cCCCcccccccc
Confidence 4457788888886543211 112233458999999998443 33456789999987421 111111 132346788888
Q ss_pred CCCEEEEEe
Q 046018 207 NGEFWVALH 215 (310)
Q Consensus 207 ~G~l~va~~ 215 (310)
.|.|-++..
T Consensus 345 kglLA~~~G 353 (545)
T KOG1272|consen 345 KGLLALSYG 353 (545)
T ss_pred ccceeeecC
Confidence 886655443
No 359
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=75.22 E-value=9.4 Score=36.52 Aligned_cols=88 Identities=17% Similarity=0.150 Sum_probs=53.6
Q ss_pred CCceEEEEeCCCCeEEEEecCC--cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeC----CCCCCeeE
Q 046018 130 KTGRLLKYEKTTKEVTILLQGL--AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAEL----PGFPDNVR 203 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~~~--~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~p~~i~ 203 (310)
..|.||.|+..++......... ...--+.++++.. +.++.+.+++|.+|-...........+... +.....++
T Consensus 53 S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~ 131 (726)
T KOG3621|consen 53 SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALE 131 (726)
T ss_pred ccceEEEEecCchhhhcccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEE
Confidence 3788999998777666544322 1223456776665 666667788888887653222222223221 22335678
Q ss_pred ECCCC-CEEEEEecCC
Q 046018 204 SNSNG-EFWVALHAKK 218 (310)
Q Consensus 204 ~d~~G-~l~va~~~~~ 218 (310)
++++| ++|.++..+.
T Consensus 132 Ws~~~~k~ysGD~~Gk 147 (726)
T KOG3621|consen 132 WSKNGMKLYSGDSQGK 147 (726)
T ss_pred ecccccEEeecCCCce
Confidence 89998 6888876654
No 360
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=74.86 E-value=53 Score=33.36 Aligned_cols=149 Identities=19% Similarity=0.228 Sum_probs=89.0
Q ss_pred EEEEeCCCCCeEEEEEeccccccccCCCCCcccccc-ceeceEEEeCCCCcEEEEECCC--ceEEEeCCCCeEEEEEeec
Q 046018 11 ILKWQGDELGWTEFAVTTSQRKECVRPFAPDIEHIC-GRPLGIRFDKKTGDLYIADAYL--GFQVVGPEGGLATQLVTEA 87 (310)
Q Consensus 11 i~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~gl~~d~~~g~l~v~~~~~--gi~~~d~~~~~~~~~~~~~ 87 (310)
...|..+...|.+-....+...+.....-..+.... ..|..+++++-.|.+|..+... .|.+-..++.....+...
T Consensus 486 avD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~- 564 (877)
T KOG1215|consen 486 AVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN- 564 (877)
T ss_pred EEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC-
Confidence 334444333376655555555543332212222222 5788999999788888888764 365656665554444332
Q ss_pred CCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEE-EEecCCcccceEEEecCCCeE
Q 046018 88 AGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVT-ILLQGLAFANGVALSRDRTFI 166 (310)
Q Consensus 88 ~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~~~gi~~~~d~~~l 166 (310)
....|+++++|-..+++|..+... ...+...+..+...+ ........|.+++...+ ++
T Consensus 565 ---~~~~p~glt~d~~~~~~yw~d~~~----------------~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~--~i 623 (877)
T KOG1215|consen 565 ---GILWPNGLTIDYETDRLYWADAKL----------------DYTIESANMDGQNRRVVDSEDLPHPFGLSVFED--YI 623 (877)
T ss_pred ---CccCCCcceEEeecceeEEEcccC----------------CcceeeeecCCCceEEeccccCCCceEEEEecc--ee
Confidence 245799999997666699998541 224555555433332 33455677888888765 38
Q ss_pred EEEecCCceEEEEEc
Q 046018 167 LIAETSNCRILRFWL 181 (310)
Q Consensus 167 yv~~~~~~~i~~~~~ 181 (310)
|+++.....+.+.+.
T Consensus 624 yw~d~~~~~~~~~~~ 638 (877)
T KOG1215|consen 624 YWTDWSNRAISRAEK 638 (877)
T ss_pred EEeeccccceEeeec
Confidence 998877665555544
No 361
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=74.67 E-value=56 Score=28.23 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=42.5
Q ss_pred CcccccCcEEEEEeCCCC-C-eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCceEEEeCCCCe
Q 046018 2 PYTGVADGRILKWQGDEL-G-WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLGFQVVGPEGGL 79 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~-~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~~ 79 (310)
++++..|+.|+.||.... + ..- .+.--.++ .+..+......+...|+++..+...+|......++..++...|+
T Consensus 204 LatgsaDg~irlWDiRrasgcf~~-lD~hn~k~---~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 204 LATGSADGAIRLWDIRRASGCFRV-LDQHNTKR---PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred EEecCCCceEEEEEeecccceeEE-eecccCcc---CccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 577888889999988664 2 221 11000011 10101112234677799998844467777666778888777665
Q ss_pred E
Q 046018 80 A 80 (310)
Q Consensus 80 ~ 80 (310)
-
T Consensus 280 n 280 (397)
T KOG4283|consen 280 N 280 (397)
T ss_pred c
Confidence 3
No 362
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=73.87 E-value=21 Score=33.69 Aligned_cols=69 Identities=12% Similarity=0.294 Sum_probs=51.0
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEE-EEecCCcccceEEEecCCCeEEEEecC
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVT-ILLQGLAFANGVALSRDRTFILIAETS 172 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~-~~~~~~~~~~gi~~~~d~~~lyv~~~~ 172 (310)
.+..+.+.|...+++|++ ...|..||...+.+. .+.++......++++|.|..|++. +.
T Consensus 568 ~vq~v~FHPs~p~lfVaT-------------------q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~g-s~ 627 (733)
T KOG0650|consen 568 LVQRVKFHPSKPYLFVAT-------------------QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILG-SY 627 (733)
T ss_pred ceeEEEecCCCceEEEEe-------------------ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEe-cC
Confidence 577888999888799987 445777887643332 244555667899999988877776 67
Q ss_pred CceEEEEEcc
Q 046018 173 NCRILRFWLH 182 (310)
Q Consensus 173 ~~~i~~~~~~ 182 (310)
.+++--||++
T Consensus 628 d~k~~WfDld 637 (733)
T KOG0650|consen 628 DKKMCWFDLD 637 (733)
T ss_pred CCeeEEEEcc
Confidence 7888889987
No 363
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=73.08 E-value=63 Score=28.17 Aligned_cols=112 Identities=9% Similarity=0.102 Sum_probs=57.8
Q ss_pred CCcEEEEECC------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018 58 TGDLYIADAY------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT 131 (310)
Q Consensus 58 ~g~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (310)
++.||+.... ..++++|+++.+...........+...-+..++.-+++ ||+..-... ....
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~-iYv~GG~~~------------~~~~ 138 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGT-LYVGGGNRN------------GKPS 138 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCE-EEEEeCcCC------------CccC
Confidence 5678887543 13778888766532111111112222222333344666 998753210 1124
Q ss_pred ceEEEEeCCCCeEEEEecCC--cccceEEEecCCCeEEEEecCC----ceEEEEEccC
Q 046018 132 GRLLKYEKTTKEVTILLQGL--AFANGVALSRDRTFILIAETSN----CRILRFWLHG 183 (310)
Q Consensus 132 g~v~~~d~~~~~~~~~~~~~--~~~~gi~~~~d~~~lyv~~~~~----~~i~~~~~~~ 183 (310)
..+++||+.+.+++.+..-. ......+..-+++ ||+..-.+ ..+++||+..
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~-iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNE-LYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCE-EEEEcCCCCccccceEEEecCC
Confidence 56999999988887654221 1122233333444 88864322 2467888764
No 364
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=71.98 E-value=12 Score=33.55 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=25.7
Q ss_pred ceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 155 NGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 155 ~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
..|-++=|.++||++..-++-|++||+..
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsD 343 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISD 343 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCC
Confidence 46788889999999999999999999864
No 365
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=71.67 E-value=8.9 Score=20.37 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=18.4
Q ss_pred CCcEEEEECCCceEEEeCCCCeE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLA 80 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~ 80 (310)
+|.||+++..+.++.+|.++++.
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~ 28 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEI 28 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcE
Confidence 56889887776799999988764
No 366
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=71.48 E-value=72 Score=28.11 Aligned_cols=102 Identities=7% Similarity=0.028 Sum_probs=49.0
Q ss_pred CCcEEEEECC--CceEEEeCC--CCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce
Q 046018 58 TGDLYIADAY--LGFQVVGPE--GGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR 133 (310)
Q Consensus 58 ~g~l~v~~~~--~gi~~~d~~--~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~ 133 (310)
+++|||+... ..++++|++ ..+.+.+...+ .. .+....++.-+++ ||+..-...... .........
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p-~~--~R~~~~~~~~~~~-iYv~GG~~~~~~------~~~~~~~~~ 86 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFP-GG--PRNQAVAAAIDGK-LYVFGGIGKANS------EGSPQVFDD 86 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCC-CC--CcccceEEEECCE-EEEEeCCCCCCC------CCcceeccc
Confidence 5799997543 247788863 33333332211 11 1122223344666 998763210000 000001245
Q ss_pred EEEEeCCCCeEEEEecCCccc-ceEE-E-ecCCCeEEEEe
Q 046018 134 LLKYEKTTKEVTILLQGLAFA-NGVA-L-SRDRTFILIAE 170 (310)
Q Consensus 134 v~~~d~~~~~~~~~~~~~~~~-~gi~-~-~~d~~~lyv~~ 170 (310)
+++||+.+.+++.+......+ .+.+ . .-+++ ||+..
T Consensus 87 v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~-IYviG 125 (346)
T TIGR03547 87 VYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQ-AYFTG 125 (346)
T ss_pred EEEEECCCCEEecCCCCCCCcccceeEEEEeCCE-EEEEc
Confidence 899999988888764222221 2322 2 23554 88863
No 367
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.42 E-value=99 Score=29.68 Aligned_cols=41 Identities=10% Similarity=0.146 Sum_probs=26.3
Q ss_pred CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCC
Q 046018 68 LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSS 113 (310)
Q Consensus 68 ~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~ 113 (310)
..|.+++-++.+..+.... -..+++.|+++|..- .+.+.+.
T Consensus 77 ~~IrVfnynt~ekV~~FeA----H~DyIR~iavHPt~P-~vLtsSD 117 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEA----HSDYIRSIAVHPTLP-YVLTSSD 117 (794)
T ss_pred ceEEEEecccceeeEEeec----cccceeeeeecCCCC-eEEecCC
Confidence 4588888877654333232 123789999999987 5555544
No 368
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=70.44 E-value=1.1e+02 Score=29.71 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=45.1
Q ss_pred cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcc-cceEEEecCCCeEEEEec
Q 046018 93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAF-ANGVALSRDRTFILIAET 171 (310)
Q Consensus 93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~-~~gi~~~~d~~~lyv~~~ 171 (310)
...-++.++||++.+-.+... .+...-++...|..++.... ..... ..+.+|.+|++.+|++..
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~-------------~G~e~y~lr~kdL~tg~~~~--d~i~~~~~~~~Wa~d~~~lfYt~~ 193 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDV-------------LGDEQYTLRFKDLATGEELP--DEITNTSGSFAWAADGKTLFYTRL 193 (682)
T ss_pred eeeeeeeeCCCCceEEEEEec-------------ccccEEEEEEEecccccccc--hhhcccccceEEecCCCeEEEEEE
Confidence 345678889999844444321 12223356667777765543 22332 567899999998888755
Q ss_pred CCc----eEEEEEccC
Q 046018 172 SNC----RILRFWLHG 183 (310)
Q Consensus 172 ~~~----~i~~~~~~~ 183 (310)
... +|++..+.+
T Consensus 194 d~~~rp~kv~~h~~gt 209 (682)
T COG1770 194 DENHRPDKVWRHRLGT 209 (682)
T ss_pred cCCCCcceEEEEecCC
Confidence 433 555555443
No 369
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.27 E-value=44 Score=31.30 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=63.3
Q ss_pred cCCCCceEEEEeCCCCeEEEEecCCccc---ceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018 127 SGDKTGRLLKYEKTTKEVTILLQGLAFA---NGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVR 203 (310)
Q Consensus 127 ~~~~~g~v~~~d~~~~~~~~~~~~~~~~---~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~ 203 (310)
.++..|.|+.|+...++.+........+ +.+....+-+.+|-+ ....++-.+++...+. ...+-..+..+..++
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~-~ad~~v~~~~~~~~~~--~~~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSV-GADLKVVYILEKEKVI--IRIWKEQKPLVSSLC 151 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEec-CCceeEEEEeccccee--eeeeccCCCccceEE
Confidence 3556888999998888887655433333 344444444445543 4556777777653211 122222334578999
Q ss_pred ECCCCCEEEEEecCCccceeeeeeccccccEEeeccchhhhhccc
Q 046018 204 SNSNGEFWVALHAKKGLFGKLILLNSWLGKTLLKLPLSFRQLHSL 248 (310)
Q Consensus 204 ~d~~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~ 248 (310)
+.+||.+.+.....- -..+-.+++.+..++.......++
T Consensus 152 is~D~~~l~~as~~i------k~~~~~~kevv~~ftgh~s~v~t~ 190 (541)
T KOG4547|consen 152 ISPDGKILLTASRQI------KVLDIETKEVVITFTGHGSPVRTL 190 (541)
T ss_pred EcCCCCEEEeccceE------EEEEccCceEEEEecCCCcceEEE
Confidence 999998766543332 222335666666654433333333
No 370
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=70.21 E-value=95 Score=29.02 Aligned_cols=122 Identities=11% Similarity=0.128 Sum_probs=57.3
Q ss_pred EEEeCCCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018 52 IRFDKKTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT 131 (310)
Q Consensus 52 l~~d~~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (310)
+..-+ +|.|++... ..+..+|..+..... ...+ ......=+++...|+|+.|+.+........ ..-.....
T Consensus 153 ~~~l~-nG~ll~~~~-~~~~e~D~~G~v~~~-~~l~-~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~-----~~~~~~~~ 223 (477)
T PF05935_consen 153 FKQLP-NGNLLIGSG-NRLYEIDLLGKVIWE-YDLP-GGYYDFHHDIDELPNGNLLILASETKYVDE-----DKDVDTVE 223 (477)
T ss_dssp EEE-T-TS-EEEEEB-TEEEEE-TT--EEEE-EE---TTEE-B-S-EEE-TTS-EEEEEEETTEE-T-----S-EE---S
T ss_pred eeEcC-CCCEEEecC-CceEEEcCCCCEEEe-eecC-CcccccccccEECCCCCEEEEEeecccccC-----CCCccEec
Confidence 44555 788877755 568899998654332 2221 111123578999999995555542100000 00001113
Q ss_pred ceEEEEeCCCCeEEEEec--------CC--------------------cccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 132 GRLLKYEKTTKEVTILLQ--------GL--------------------AFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 132 g~v~~~d~~~~~~~~~~~--------~~--------------------~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
..|+.+| .+|+...... .. ...|.|.+++....|+++....+.|+.++..+
T Consensus 224 D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t 302 (477)
T PF05935_consen 224 DVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT 302 (477)
T ss_dssp -EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred CEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence 3467777 4555543210 00 12468999995556888888888999999553
No 371
>PLN02193 nitrile-specifier protein
Probab=69.33 E-value=98 Score=28.82 Aligned_cols=110 Identities=11% Similarity=0.038 Sum_probs=59.6
Q ss_pred CCcEEEEECC------CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018 58 TGDLYIADAY------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT 131 (310)
Q Consensus 58 ~g~l~v~~~~------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (310)
++.||+.... ..++++|+.+.+.+.+...... +..+....++.-+++ ||+..-... ....
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~-P~~R~~h~~~~~~~~-iYv~GG~~~------------~~~~ 293 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEG-PTPRSFHSMAADEEN-VYVFGGVSA------------TARL 293 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCC-CCCccceEEEEECCE-EEEECCCCC------------CCCc
Confidence 5689887543 2388999998877655332111 111112223334555 888653210 0113
Q ss_pred ceEEEEeCCCCeEEEEecCC--ccc---ceEEEecCCCeEEEEecC----CceEEEEEccC
Q 046018 132 GRLLKYEKTTKEVTILLQGL--AFA---NGVALSRDRTFILIAETS----NCRILRFWLHG 183 (310)
Q Consensus 132 g~v~~~d~~~~~~~~~~~~~--~~~---~gi~~~~d~~~lyv~~~~----~~~i~~~~~~~ 183 (310)
..+..||+.+.+++.+.... ..+ ..++. -+++ +|+..-. .+.+++||+..
T Consensus 294 ~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gk-iyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 294 KTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGK-VWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred ceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCc-EEEEECCCCCccCceEEEECCC
Confidence 45889999988887654311 111 22333 3555 7765322 25799999874
No 372
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.84 E-value=26 Score=31.38 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=47.8
Q ss_pred cCCcceEEeCCCC-EEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEec
Q 046018 93 RFTNDLDIDEHKG-VIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAET 171 (310)
Q Consensus 93 ~~~~~i~~d~~g~-~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~ 171 (310)
..+.+|+++|..+ .+-++. ....|-.+|.++............+-..+|+.|..+.+++.-
T Consensus 194 ~~IrdlafSp~~~GLl~~as------------------l~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 194 SFIRDLAFSPFNEGLLGLAS------------------LGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred hhhhhhccCccccceeeeec------------------cCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec
Confidence 4678899988765 133332 244567777775433332233456778899998776655667
Q ss_pred CCceEEEEEcc
Q 046018 172 SNCRILRFWLH 182 (310)
Q Consensus 172 ~~~~i~~~~~~ 182 (310)
.++.|++||+.
T Consensus 256 ~nG~VlvyD~R 266 (463)
T KOG1645|consen 256 QNGMVLVYDMR 266 (463)
T ss_pred cCceEEEEEcc
Confidence 78999999987
No 373
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=68.45 E-value=1.1e+02 Score=29.17 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=23.9
Q ss_pred cceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 154 ANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 154 ~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
-.+++|+|-.-.++++-...+.|..||+.
T Consensus 444 v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 444 VTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred eeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 45789999776688877788999999986
No 374
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=67.89 E-value=1.1e+02 Score=28.69 Aligned_cols=153 Identities=12% Similarity=0.117 Sum_probs=66.1
Q ss_pred CCcEEEEEC---C--CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCc
Q 046018 58 TGDLYIADA---Y--LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTG 132 (310)
Q Consensus 58 ~g~l~v~~~---~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g 132 (310)
...||+... . ...+.+|.++. ++-..... ......+...++|+ +++.. ..
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD~~G~-Vrw~~~~~----~~~~~~~~~l~nG~-ll~~~-------------------~~ 167 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLIDNNGD-VRWYLPLD----SGSDNSFKQLPNGN-LLIGS-------------------GN 167 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEETTS--EEEEE-GG----GT--SSEEE-TTS--EEEEE-------------------BT
T ss_pred CCcEEEEeCCCCCCCceEEEECCCcc-EEEEEccC----ccccceeeEcCCCC-EEEec-------------------CC
Confidence 345777766 1 34788898854 44333221 11122277889999 77776 35
Q ss_pred eEEEEeCCCCeEEEEe-cC--CcccceEEEecCCCeEEEEec------------CCceEEEEEccCCCCCcc---eee--
Q 046018 133 RLLKYEKTTKEVTILL-QG--LAFANGVALSRDRTFILIAET------------SNCRILRFWLHGPNSGKQ---DVF-- 192 (310)
Q Consensus 133 ~v~~~d~~~~~~~~~~-~~--~~~~~gi~~~~d~~~lyv~~~------------~~~~i~~~~~~~~~~~~~---~~~-- 192 (310)
.+..+|..+....... .. ...-+.+...|+|+.|+.+.. ..+.|..+|..|...... ..+
T Consensus 168 ~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~ 247 (477)
T PF05935_consen 168 RLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDP 247 (477)
T ss_dssp EEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-T
T ss_pred ceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCc
Confidence 6777777633222211 11 112356667777776555441 134555555332210000 000
Q ss_pred -----------eeCC--------CCCCeeEECC-CCCEEEEEecCCccceeeeeeccccccEEeecc
Q 046018 193 -----------AELP--------GFPDNVRSNS-NGEFWVALHAKKGLFGKLILLNSWLGKTLLKLP 239 (310)
Q Consensus 193 -----------~~~~--------~~p~~i~~d~-~G~l~va~~~~~~~~~~~i~~~~~~g~~~~~~~ 239 (310)
.... -..+++..|+ +++|.++......+ +.++..+++....+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V----~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 248 YRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAV----IKIDYRTGKIKWILG 310 (477)
T ss_dssp T--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EE----EEEE-TTS-EEEEES
T ss_pred ccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEE----EEEECCCCcEEEEeC
Confidence 0000 0225577777 67788887766553 334446666665553
No 375
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=67.46 E-value=94 Score=27.88 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=48.3
Q ss_pred CCcEEEEECC--CceEEEeCCC--CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCce
Q 046018 58 TGDLYIADAY--LGFQVVGPEG--GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGR 133 (310)
Q Consensus 58 ~g~l~v~~~~--~gi~~~d~~~--~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~ 133 (310)
+++|||.... ..++++|.+. +....+... +..+ .....++.-++. ||+..-...-.. .........
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~-p~~~--r~~~~~v~~~~~-IYV~GG~~~~~~------~~~~~~~~~ 107 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAF-PGGP--REQAVAAFIDGK-LYVFGGIGKTNS------EGSPQVFDD 107 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcC-CCCC--cccceEEEECCE-EEEEcCCCCCCC------CCceeEccc
Confidence 6799997544 2377888753 333333211 1111 112223334565 888753210000 000001245
Q ss_pred EEEEeCCCCeEEEEecCCccc-ceE-EEe-cCCCeEEEEe
Q 046018 134 LLKYEKTTKEVTILLQGLAFA-NGV-ALS-RDRTFILIAE 170 (310)
Q Consensus 134 v~~~d~~~~~~~~~~~~~~~~-~gi-~~~-~d~~~lyv~~ 170 (310)
+++||+.+.+++.+....+.+ .+. +.. -+++ ||+..
T Consensus 108 v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~-IYv~G 146 (376)
T PRK14131 108 VYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGK-AYITG 146 (376)
T ss_pred EEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCE-EEEEC
Confidence 899999988888765321222 122 222 3554 88863
No 376
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=67.44 E-value=73 Score=30.51 Aligned_cols=88 Identities=6% Similarity=0.009 Sum_probs=48.1
Q ss_pred CceEEEEeCCCCeEEE----Ee---cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeE
Q 046018 131 TGRLLKYEKTTKEVTI----LL---QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVR 203 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~----~~---~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~ 203 (310)
.|.|..+|.....++. +. ......-.+.+.| ++.++|+.++..++..||..+........+..-.+....+|
T Consensus 73 ~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~c 151 (720)
T KOG0321|consen 73 DGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSEC 151 (720)
T ss_pred CCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhh
Confidence 6667777765433331 00 0111234677888 77789998999999999988543221222222223334566
Q ss_pred ECCCC-CEEEEEecCCc
Q 046018 204 SNSNG-EFWVALHAKKG 219 (310)
Q Consensus 204 ~d~~G-~l~va~~~~~~ 219 (310)
+-+.. .+++....+++
T Consensus 152 f~~~n~~vF~tGgRDg~ 168 (720)
T KOG0321|consen 152 FMPTNPAVFCTGGRDGE 168 (720)
T ss_pred hccCCCcceeeccCCCc
Confidence 65555 34444444443
No 377
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=67.43 E-value=1.1e+02 Score=28.63 Aligned_cols=112 Identities=11% Similarity=0.077 Sum_probs=63.5
Q ss_pred cceeceEEEeCCCCcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 46 CGRPLGIRFDKKTGDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 46 ~~~p~gl~~d~~~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
...+..+.+++ +|...++... +-|..+|....+..+... +. +...-.+++-++. ++.+..
T Consensus 217 ~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~---~~--h~~rvg~laW~~~-~lssGs------------ 277 (484)
T KOG0305|consen 217 EELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLR---GS--HASRVGSLAWNSS-VLSSGS------------ 277 (484)
T ss_pred CCceEEEEECC-CCCEEEEeecCCeEEEEehhhcccccccc---CC--cCceeEEEeccCc-eEEEec------------
Confidence 35677888888 6654444444 447788876554322211 10 2233333444455 555543
Q ss_pred hhcCCCCceEEEEeCCCCeEEE--EecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTI--LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~--~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
..+.+..+|....+... +..--...-|+.+++|++ .+.+.-..+.+.+||..
T Consensus 278 -----r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~ 331 (484)
T KOG0305|consen 278 -----RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGL 331 (484)
T ss_pred -----CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCC-eeccCCCccceEeccCC
Confidence 36778877764332211 111223467999999998 55565667799999874
No 378
>PRK10115 protease 2; Provisional
Probab=67.02 E-value=1.4e+02 Score=29.55 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=47.6
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecC
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETS 172 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~ 172 (310)
....+.++|+|++|.++.+. .+...-.++..|.++|.... ..... ...+++.+|++.+|++...
T Consensus 128 ~l~~~~~Spdg~~la~~~d~-------------~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDF-------------LSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEeEEEECCCCCEEEEEecC-------------CCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEec
Confidence 35567889999966666532 12234468888988775211 11111 2469999999888776432
Q ss_pred -----CceEEEEEccCC
Q 046018 173 -----NCRILRFWLHGP 184 (310)
Q Consensus 173 -----~~~i~~~~~~~~ 184 (310)
...|+++++.++
T Consensus 193 ~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 193 PVTLLPYQVWRHTIGTP 209 (686)
T ss_pred CCCCCCCEEEEEECCCC
Confidence 257888887654
No 379
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=66.72 E-value=60 Score=30.58 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=40.8
Q ss_pred cccceEEEecCCCeEEEEecC--CceEEEEEccCCCCCcceeeeeC-CCCCCeeEECCCCCEEEEEecC
Q 046018 152 AFANGVALSRDRTFILIAETS--NCRILRFWLHGPNSGKQDVFAEL-PGFPDNVRSNSNGEFWVALHAK 217 (310)
Q Consensus 152 ~~~~gi~~~~d~~~lyv~~~~--~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~l~va~~~~ 217 (310)
...|.+.++|.|+++.++.-. .+.+.-||.+-. ........ ......+..||.|+..++....
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a---~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA---DLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchh---hhhhccCccccccccceECCCCCEEEEeeeh
Confidence 567999999999988876544 577888886521 11111110 0124678999999887765543
No 380
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=66.50 E-value=9.2 Score=21.46 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=16.3
Q ss_pred CcEEEEECCCceEEEeCCCCeE
Q 046018 59 GDLYIADAYLGFQVVGPEGGLA 80 (310)
Q Consensus 59 g~l~v~~~~~gi~~~d~~~~~~ 80 (310)
|.+|++...+.|+.+|.++|+.
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~ 22 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKV 22 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSE
T ss_pred CEEEEeCCCCEEEEEECCCCCE
Confidence 4678884445588999999875
No 381
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.30 E-value=81 Score=26.70 Aligned_cols=52 Identities=13% Similarity=0.053 Sum_probs=30.6
Q ss_pred CceEEEEeCCCCeEEEEe---cCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 131 TGRLLKYEKTTKEVTILL---QGLAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~---~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
+|.+..||.. ....++. +-......+-+.+-.+..+++.++.++|-.|+++-
T Consensus 82 DGSLrl~d~~-~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 82 DGSLRLFDLT-MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred CceEEEeccC-CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 7888888842 2122211 11122334445554555777779999999999874
No 382
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=63.93 E-value=24 Score=19.84 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=16.8
Q ss_pred eEEEEeCCEEEEecCCCCeEEEecc
Q 046018 283 SEVEEKDGQLWMGSVLMPFIGIYNR 307 (310)
Q Consensus 283 ~~~~~~~g~l~vgs~~~~~i~~~~~ 307 (310)
+.++..+++||+++. +..|+.+|.
T Consensus 15 ~~~~v~~g~vyv~~~-dg~l~ald~ 38 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTG-DGNLYALDA 38 (40)
T ss_dssp S--EECTSEEEEE-T-TSEEEEEET
T ss_pred cCCEEECCEEEEEcC-CCEEEEEeC
Confidence 444667899999998 777888774
No 383
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=63.58 E-value=31 Score=21.48 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=13.5
Q ss_pred CeeEECCCCCEEEEEec
Q 046018 200 DNVRSNSNGEFWVALHA 216 (310)
Q Consensus 200 ~~i~~d~~G~l~va~~~ 216 (310)
..+++.+||+|.++.+.
T Consensus 4 ~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 4 YAVAVQSDGKILVAGYV 20 (55)
T ss_pred EEEEECCCCcEEEEEEe
Confidence 46788899999888654
No 384
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=63.36 E-value=1e+02 Score=26.79 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=48.6
Q ss_pred ceeceEEEeCCCCcEEEEECC----CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY----LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~----~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~ 122 (310)
+....|..||-+.+|+++-.. -||+.+|.++++.+.+...+. .......+. .+++. .. |
T Consensus 106 GEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps-~KG~~~~D~--------a~F~i-~~-~------ 168 (339)
T PF09910_consen 106 GEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPS-LKGTLVHDY--------ACFGI-NN-F------ 168 (339)
T ss_pred cchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCC-cCceEeeee--------EEEec-cc-c------
Confidence 566678899878899998654 269999999999887765431 122222222 33333 21 1
Q ss_pred hhhhcCCCCceEEEEeCCCCeE
Q 046018 123 SSILSGDKTGRLLKYEKTTKEV 144 (310)
Q Consensus 123 ~~~~~~~~~g~v~~~d~~~~~~ 144 (310)
......|.++|..+++.
T Consensus 169 -----~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 169 -----HKGVSGIHCLDLISGKW 185 (339)
T ss_pred -----ccCCceEEEEEccCCeE
Confidence 01244689999988888
No 385
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=63.11 E-value=41 Score=28.71 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred cceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccc-------eEEEecCCCeEEE
Q 046018 96 NDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFAN-------GVALSRDRTFILI 168 (310)
Q Consensus 96 ~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~-------gi~~~~d~~~lyv 168 (310)
..++...+|+ +.... .....-+......+......-.-|. -++++||+. |++
T Consensus 1 W~~~~~~~Gk-~lAi~-------------------qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~t-lLa 59 (282)
T PF15492_consen 1 WHLALSSDGK-LLAIL-------------------QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCT-LLA 59 (282)
T ss_pred CceeecCCCc-EEEEE-------------------eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCc-EEE
Q ss_pred EecCCceEEEEEccC
Q 046018 169 AETSNCRILRFWLHG 183 (310)
Q Consensus 169 ~~~~~~~i~~~~~~~ 183 (310)
....++.|.+||.-|
T Consensus 60 ~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 60 YAESTGTIRVFDLMG 74 (282)
T ss_pred EEcCCCeEEEEeccc
No 386
>PLN02193 nitrile-specifier protein
Probab=62.92 E-value=1.3e+02 Score=27.98 Aligned_cols=77 Identities=6% Similarity=-0.078 Sum_probs=43.1
Q ss_pred CCcEEEEECCC------ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCC
Q 046018 58 TGDLYIADAYL------GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKT 131 (310)
Q Consensus 58 ~g~l~v~~~~~------gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~ 131 (310)
+++|||..... .+.++|+.+.+.+.+... ...+..+....++.-+++ +|+.--.. +...
T Consensus 278 ~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~-~~~~~~R~~~~~~~~~gk-iyviGG~~-------------g~~~ 342 (470)
T PLN02193 278 EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTP-GDSFSIRGGAGLEVVQGK-VWVVYGFN-------------GCEV 342 (470)
T ss_pred CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCC-CCCCCCCCCcEEEEECCc-EEEEECCC-------------CCcc
Confidence 57899876532 277889988876544221 111111112222334677 88764210 0113
Q ss_pred ceEEEEeCCCCeEEEEec
Q 046018 132 GRLLKYEKTTKEVTILLQ 149 (310)
Q Consensus 132 g~v~~~d~~~~~~~~~~~ 149 (310)
..+++||+++.+++.+..
T Consensus 343 ~dv~~yD~~t~~W~~~~~ 360 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVET 360 (470)
T ss_pred CceEEEECCCCEEEEecc
Confidence 469999999988887643
No 387
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=62.68 E-value=1.1e+02 Score=28.84 Aligned_cols=63 Identities=11% Similarity=0.098 Sum_probs=46.0
Q ss_pred cccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCc
Q 046018 152 AFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 152 ~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~ 219 (310)
..+-..+.+|+.+.|.+. ..++.|..||...+ .......+-.|.-++..++|.+++..+..++
T Consensus 260 s~v~~ca~sp~E~kLvlG-C~DgSiiLyD~~~~----~t~~~ka~~~P~~iaWHp~gai~~V~s~qGe 322 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLG-CEDGSIILYDTTRG----VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGE 322 (545)
T ss_pred CcceEEecCcccceEEEE-ecCCeEEEEEcCCC----eeeeeeecccceEEEEcCCCcEEEEEcCCce
Confidence 345678899998866665 67799999997643 1223333346899999999998888877776
No 388
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=62.37 E-value=1.2e+02 Score=27.24 Aligned_cols=39 Identities=13% Similarity=0.100 Sum_probs=22.4
Q ss_pred ceEEEEeCCCCeEEEEecCCc-ccceEEEecCCCeEEEEe
Q 046018 132 GRLLKYEKTTKEVTILLQGLA-FANGVALSRDRTFILIAE 170 (310)
Q Consensus 132 g~v~~~d~~~~~~~~~~~~~~-~~~gi~~~~d~~~lyv~~ 170 (310)
..|++||+.+.++..+..... ...+.++..-+..||+..
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~G 228 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLIN 228 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEe
Confidence 569999999988886543221 122333322233488754
No 389
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=61.93 E-value=1.1e+02 Score=28.89 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=49.0
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcc--cceEEEecC-CCeEEEEe
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAF--ANGVALSRD-RTFILIAE 170 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~--~~gi~~~~d-~~~lyv~~ 170 (310)
.+|.+....+|. +.++.+. +-++..||+-..+.......... .-..-|-|. +..++++.
T Consensus 52 CVN~LeWn~dG~-lL~SGSD-----------------D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sg 113 (758)
T KOG1310|consen 52 CVNCLEWNADGE-LLASGSD-----------------DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSG 113 (758)
T ss_pred eecceeecCCCC-EEeecCC-----------------cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEec
Confidence 689999999999 7777643 66799999864443333322222 234445553 44588888
Q ss_pred cCCceEEEEEccC
Q 046018 171 TSNCRILRFWLHG 183 (310)
Q Consensus 171 ~~~~~i~~~~~~~ 183 (310)
.+...|.+||++.
T Consensus 114 AgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 114 AGDKLIKLFDLDS 126 (758)
T ss_pred cCcceEEEEeccc
Confidence 8889999999873
No 390
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=61.26 E-value=70 Score=27.88 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=32.2
Q ss_pred eceEEEeCCCCcEEEEECCCceE--EEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEe
Q 046018 49 PLGIRFDKKTGDLYIADAYLGFQ--VVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTD 111 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~~~gi~--~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~ 111 (310)
+..+... ++.|+++|..+++. +++.+..++..+...... ..+.++.+-.+++.+.++|
T Consensus 132 i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~---~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 132 ITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQP---RWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp EEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS----BEEEEEEEE-SSSEEEEEE
T ss_pred EEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC---ccEEEEEEecCCcEEEEEc
Confidence 3344444 46899999988854 557766667666543221 1334455543444366666
No 391
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=61.15 E-value=56 Score=31.74 Aligned_cols=119 Identities=13% Similarity=0.207 Sum_probs=61.6
Q ss_pred CcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCC
Q 046018 95 TNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSN 173 (310)
Q Consensus 95 ~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~ 173 (310)
+..|.++++.. +..+... +|.|-.||.+.++... +.-....+--+.|.|=+.+. ...+..
T Consensus 73 IeSl~f~~~E~-Llaagsa-----------------sgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~-a~gStd 133 (825)
T KOG0267|consen 73 IESLTFDTSER-LLAAGSA-----------------SGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFF-ASGSTD 133 (825)
T ss_pred ceeeecCcchh-hhccccc-----------------CCceeeeehhhhhhhhhhhccccCcceeeeccceEEe-cccccc
Confidence 56788888877 6666543 7889999998654322 22223334456677765422 122223
Q ss_pred ceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCCccceeeeeecc-ccccEEeecc
Q 046018 174 CRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKKGLFGKLILLNS-WLGKTLLKLP 239 (310)
Q Consensus 174 ~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~~~~~~~i~~~~-~~g~~~~~~~ 239 (310)
.-+.+||.. +.+....+..-++..+-+.+.|+|++ ++.....+. +..++ ..|+++..++
T Consensus 134 td~~iwD~R--k~Gc~~~~~s~~~vv~~l~lsP~Gr~-v~~g~ed~t----vki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 134 TDLKIWDIR--KKGCSHTYKSHTRVVDVLRLSPDGRW-VASGGEDNT----VKIWDLTAGKLSKEFK 193 (825)
T ss_pred ccceehhhh--ccCceeeecCCcceeEEEeecCCCce-eeccCCcce----eeeecccccccccccc
Confidence 344455543 11222222212223456788898854 444433222 44444 4566665554
No 392
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=61.13 E-value=1.5e+02 Score=28.01 Aligned_cols=42 Identities=7% Similarity=0.123 Sum_probs=23.4
Q ss_pred CceEEEEeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCC
Q 046018 131 TGRLLKYEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSN 173 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~ 173 (310)
+|-|-.|... |-.+. +..........++.|+...++++..++
T Consensus 125 DG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h 167 (737)
T KOG1524|consen 125 DGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSNSIVFCQGGH 167 (737)
T ss_pred CceEEEEecc-chHHHHHhhcCceeEEEEECCCCCceEEecCCe
Confidence 5656566543 43332 222333456788888877666665443
No 393
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=59.54 E-value=1.1e+02 Score=25.88 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=60.7
Q ss_pred eEEEeCCCCcEEEEECC---Cc---eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 51 GIRFDKKTGDLYIADAY---LG---FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~---~g---i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
.+|+|. .-|||.-.. .| |.++|+++-.++.........+. ..+ ++--=|- ||++++...
T Consensus 127 D~AvDE--~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T~~~k~~-~~n--aFmvCGv-LY~~~s~~~--------- 191 (250)
T PF02191_consen 127 DFAVDE--NGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNTSYPKRS-AGN--AFMVCGV-LYATDSYDT--------- 191 (250)
T ss_pred EEEEcC--CCEEEEEecCCCCCcEEEEeeCcccCceEEEEEeccCchh-hcc--eeeEeeE-EEEEEECCC---------
Confidence 567764 568887443 33 77889988776554432111111 111 2222355 999886421
Q ss_pred hhcCCCCce-EEEEeCCCCeEEEEe----cCCcccceEEEecCCCeEEEEecCCceEEEEEc
Q 046018 125 ILSGDKTGR-LLKYEKTTKEVTILL----QGLAFANGVALSRDRTFILIAETSNCRILRFWL 181 (310)
Q Consensus 125 ~~~~~~~g~-v~~~d~~~~~~~~~~----~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~ 181 (310)
...+ -+.||..+++.+.+. .......-|..+|-.+.||+=+ ++.+..|++
T Consensus 192 -----~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd--~G~~v~Y~v 246 (250)
T PF02191_consen 192 -----RDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD--NGYQVTYDV 246 (250)
T ss_pred -----CCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE--CCeEEEEEE
Confidence 1233 578898877655322 2223345678888777788754 455555554
No 394
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=58.62 E-value=1.5e+02 Score=27.45 Aligned_cols=29 Identities=10% Similarity=0.173 Sum_probs=22.1
Q ss_pred cceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 154 ANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 154 ~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
-..+.++|||+.||+-. + ..+.+++.+..
T Consensus 223 v~qllL~Pdg~~LYv~~-g-~~~~v~~L~~r 251 (733)
T COG4590 223 VSQLLLTPDGKTLYVRT-G-SELVVALLDKR 251 (733)
T ss_pred hHhhEECCCCCEEEEec-C-CeEEEEeeccc
Confidence 35788999999999974 3 67777777644
No 395
>PRK10115 protease 2; Provisional
Probab=58.58 E-value=1.9e+02 Score=28.49 Aligned_cols=114 Identities=7% Similarity=0.034 Sum_probs=61.7
Q ss_pred eceEEEeCCCCcEEEEEC-CCc-----eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhh
Q 046018 49 PLGIRFDKKTGDLYIADA-YLG-----FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFM 122 (310)
Q Consensus 49 p~gl~~d~~~g~l~v~~~-~~g-----i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~ 122 (310)
..++.+++ +|++.+... ..| |+++|..++.. +.....+. . ..++..+|++.+|++......
T Consensus 129 l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~--l~~~i~~~---~-~~~~w~~D~~~~~y~~~~~~~------ 195 (686)
T PRK10115 129 LGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNW--YPELLDNV---E-PSFVWANDSWTFYYVRKHPVT------ 195 (686)
T ss_pred EeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCC--CCccccCc---c-eEEEEeeCCCEEEEEEecCCC------
Confidence 44678888 666433333 233 77778877752 11111111 1 458888888778877642100
Q ss_pred hhhhcCCCCceEEEEeCCCC--eEEEEecCCcccc--eEEEecCCCeEEEEec--CCceEEEEEc
Q 046018 123 SSILSGDKTGRLLKYEKTTK--EVTILLQGLAFAN--GVALSRDRTFILIAET--SNCRILRFWL 181 (310)
Q Consensus 123 ~~~~~~~~~g~v~~~d~~~~--~~~~~~~~~~~~~--gi~~~~d~~~lyv~~~--~~~~i~~~~~ 181 (310)
...-.|++++..++ +-+.+......+. .+..+.|++.+++... .++.++.++.
T Consensus 196 ------~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 196 ------LLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred ------CCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 02356899988777 3344443222222 3344558887665333 2357787774
No 396
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.17 E-value=58 Score=30.55 Aligned_cols=50 Identities=14% Similarity=0.095 Sum_probs=30.5
Q ss_pred CCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEe
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTD 111 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~ 111 (310)
+|.|.|+...+.|..+|.-+...+.... + .+..+-+|.+..+|.+|..|.
T Consensus 441 sG~IvvgS~~GdIRLYdri~~~AKTAlP---g-LG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 441 SGYIVVGSLKGDIRLYDRIGRRAKTALP---G-LGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred CceEEEeecCCcEEeehhhhhhhhhccc---c-cCCceeeEEeeccCcEEEEec
Confidence 7888888776667777764333222211 1 123466888999999555544
No 397
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=57.74 E-value=1.3e+02 Score=26.39 Aligned_cols=87 Identities=10% Similarity=0.096 Sum_probs=55.9
Q ss_pred CCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC---CeeEEC
Q 046018 130 KTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP---DNVRSN 205 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p---~~i~~d 205 (310)
..|-|..+|+.++++..-. ......|.|-+.|+.-.|+++.+....|..|++... ....++....+.- -.+.++
T Consensus 113 ~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~--~Cv~VfGG~egHrdeVLSvD~~ 190 (385)
T KOG1034|consen 113 YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--VCVAVFGGVEGHRDEVLSVDFS 190 (385)
T ss_pred ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC--eEEEEecccccccCcEEEEEEc
Confidence 3567888898877665433 334557889999987668888888999999998743 1223343333332 245677
Q ss_pred CCCCEEEEEecCC
Q 046018 206 SNGEFWVALHAKK 218 (310)
Q Consensus 206 ~~G~l~va~~~~~ 218 (310)
.+|...++..-.+
T Consensus 191 ~~gd~i~ScGmDh 203 (385)
T KOG1034|consen 191 LDGDRIASCGMDH 203 (385)
T ss_pred CCCCeeeccCCcc
Confidence 8887555443333
No 398
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=56.14 E-value=57 Score=30.53 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCceEEEEeCCCCeEEEEecCCcc-cceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 130 KTGRLLKYEKTTKEVTILLQGLAF-ANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~~~~~-~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
..|-+..||.-+.+.++..+.++. ..+|.++.+|++++.+ .. ..|...+..
T Consensus 581 ~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaT-Ck-~yllL~d~~ 632 (776)
T COG5167 581 RKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILAT-CK-NYLLLTDVP 632 (776)
T ss_pred CCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEe-ec-ceEEEEecc
Confidence 356688888766666666655544 5799999999977765 32 466666654
No 399
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=55.24 E-value=77 Score=29.90 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=39.8
Q ss_pred cCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeE
Q 046018 93 RFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFI 166 (310)
Q Consensus 93 ~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~l 166 (310)
...|.+..+|.|+++.++.-. ...|.+..||.+-..++... ......+.+.++|-|+++
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~---------------s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYv 552 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALV---------------SRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYV 552 (698)
T ss_pred cccceEEEcCCCcEEEEEEec---------------ccccceEEEecchhhhhhccCccccccccceECCCCCEE
Confidence 468999999999966666522 13677999997643333322 233446789999999843
No 400
>smart00284 OLF Olfactomedin-like domains.
Probab=55.19 E-value=1.3e+02 Score=25.49 Aligned_cols=142 Identities=12% Similarity=0.139 Sum_probs=73.0
Q ss_pred CCcEEEEECC-CceEEEeCCCCeEEEEEeecC----Cc-----cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 58 TGDLYIADAY-LGFQVVGPEGGLATQLVTEAA----GQ-----PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 58 ~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~----~~-----~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
+|.||.--.. ..|.++|..++........+. .. ....-.++|+|.+| ||+-=...
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~G--LWvIYat~------------- 147 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENG--LWVIYATE------------- 147 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCc--eEEEEecc-------------
Confidence 4678886544 359999999887642211111 10 01123578888888 77763221
Q ss_pred CCCCce--EEEEeCCCCeEEEEe-cCC---cccceEEEecCCCeEEEEec----CCceEEEEEccCCCCCccee-eeeCC
Q 046018 128 GDKTGR--LLKYEKTTKEVTILL-QGL---AFANGVALSRDRTFILIAET----SNCRILRFWLHGPNSGKQDV-FAELP 196 (310)
Q Consensus 128 ~~~~g~--v~~~d~~~~~~~~~~-~~~---~~~~gi~~~~d~~~lyv~~~----~~~~i~~~~~~~~~~~~~~~-~~~~~ 196 (310)
...|. |.++|+++=+++... ... ...+...++ |. ||++++ .+.--+.||..+.+.....+ +....
T Consensus 148 -~~~g~ivvSkLnp~tL~ve~tW~T~~~k~sa~naFmvC--Gv-LY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y 223 (255)
T smart00284 148 -QNAGKIVISKLNPATLTIENTWITTYNKRSASNAFMIC--GI-LYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMY 223 (255)
T ss_pred -CCCCCEEEEeeCcccceEEEEEEcCCCcccccccEEEe--eE-EEEEccCCCCCcEEEEEEECCCCccceeeeeecccc
Confidence 12344 458898765554422 222 223455555 44 999875 23346677776532222211 11122
Q ss_pred CCCCeeEECCCCCEEEEEecCC
Q 046018 197 GFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 197 ~~p~~i~~d~~G~l~va~~~~~ 218 (310)
+.-..+...|..+-..+-..+.
T Consensus 224 ~~~s~l~YNP~d~~LY~wdng~ 245 (255)
T smart00284 224 EYISMLDYNPNDRKLYAWNNGH 245 (255)
T ss_pred ccceeceeCCCCCeEEEEeCCe
Confidence 3334566666654433433444
No 401
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=54.85 E-value=1.5e+02 Score=26.15 Aligned_cols=154 Identities=9% Similarity=0.002 Sum_probs=79.7
Q ss_pred eeceEEEeC--CCCcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeC--CCCEEEEEeCCCchhhhhhhh
Q 046018 48 RPLGIRFDK--KTGDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDE--HKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 48 ~p~gl~~d~--~~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~--~g~~l~v~~~~~~~~~~~~~~ 123 (310)
...++.+-. ....|+.+...+-|..+|.+...-...... ..-+ ....+++|. +++ +..+..-.
T Consensus 72 ~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~-~~~~--~~~f~~ld~nck~~-ii~~GtE~--------- 138 (376)
T KOG1188|consen 72 TTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW-TQQS--GTPFICLDLNCKKN-IIACGTEL--------- 138 (376)
T ss_pred cccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec-cCCC--CCcceEeeccCcCC-eEEecccc---------
Confidence 344666544 134566665555577778776432111111 1111 113345554 677 77665321
Q ss_pred hhhcCCCCceEEEEeCCCCeE--EEEecC-CcccceEEEecCCCeEEEEecCCceEEEEEccCCCCC-cceeeeeCCCCC
Q 046018 124 SILSGDKTGRLLKYEKTTKEV--TILLQG-LAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSG-KQDVFAELPGFP 199 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~--~~~~~~-~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~p 199 (310)
......|+.||....+- ..+.+. ......+.|.|..-.|+++.+..+-|-+||....... ......+.....
T Consensus 139 ----~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI 214 (376)
T KOG1188|consen 139 ----TRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSI 214 (376)
T ss_pred ----ccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhccccee
Confidence 12355788898743211 111111 1224578898876668888888999999998643110 000011111123
Q ss_pred CeeEECCCC--CEEEEEecCC
Q 046018 200 DNVRSNSNG--EFWVALHAKK 218 (310)
Q Consensus 200 ~~i~~d~~G--~l~va~~~~~ 218 (310)
.-+.+-.++ +||.-++-..
T Consensus 215 ~~igw~~~~ykrI~clTH~Et 235 (376)
T KOG1188|consen 215 HLIGWLSKKYKRIMCLTHMET 235 (376)
T ss_pred eeeeeecCCcceEEEEEccCc
Confidence 456666777 7887766544
No 402
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=51.98 E-value=2.1e+02 Score=26.83 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=63.9
Q ss_pred ceeceEEEeCCCCcEEEEECC--CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAY--LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~--~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
+..+..++.|.+.+.-|.... ..+..+|.+++ +..... -..=|.+.++|.++++.++.-.
T Consensus 275 ~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P------e~~rNT~~fsp~~r~il~agF~----------- 336 (561)
T COG5354 275 DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP------EQKRNTIFFSPHERYILFAGFD----------- 336 (561)
T ss_pred ccceeeeecccCCceeEEecccccceeecccccc-eEEecC------CcccccccccCcccEEEEecCC-----------
Confidence 455677777633343333212 34667777765 332221 1123667888888877776532
Q ss_pred hhcCCCCceEEEEeCCCCeEEEE-ecCCcccceEEEecCCCeEEEEecCC------ceEEEEEccC
Q 046018 125 ILSGDKTGRLLKYEKTTKEVTIL-LQGLAFANGVALSRDRTFILIAETSN------CRILRFWLHG 183 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~~~~~~-~~~~~~~~gi~~~~d~~~lyv~~~~~------~~i~~~~~~~ 183 (310)
...|.+..+++.+ ++.++ .-......-.-|+||+.+++.+ +.+ ..+.+++..+
T Consensus 337 ----nl~gni~i~~~~~-rf~~~~~~~~~n~s~~~wspd~qF~~~~-~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 337 ----NLQGNIEIFDPAG-RFKVAGAFNGLNTSYCDWSPDGQFYDTD-TTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ----ccccceEEeccCC-ceEEEEEeecCCceEeeccCCceEEEec-CCCcccccCcceEEEEecC
Confidence 3478899999984 55544 2223333445689999965554 433 3455555443
No 403
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=51.62 E-value=42 Score=20.00 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=22.6
Q ss_pred cceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 154 ANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 154 ~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
..-++++|... |+...+..+.|.+++.+++
T Consensus 14 v~~~~w~P~md-LiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 14 VSCMSWCPTMD-LIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred EEEEEECCCCC-EEEEEECCCeEEEEECCCc
Confidence 45788999988 5555577889999987643
No 404
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=51.61 E-value=2.4e+02 Score=27.50 Aligned_cols=96 Identities=19% Similarity=0.238 Sum_probs=59.4
Q ss_pred CcccccCcEEEEEeCCCCC--eEEEEEeccccccccCCCCCccccccceeceEEEeCCCCcEEEEECCCc-eEEEe-CCC
Q 046018 2 PYTGVADGRILKWQGDELG--WTEFAVTTSQRKECVRPFAPDIEHICGRPLGIRFDKKTGDLYIADAYLG-FQVVG-PEG 77 (310)
Q Consensus 2 ~~~~~~~~~i~~~~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gl~~d~~~g~l~v~~~~~g-i~~~d-~~~ 77 (310)
++++.+|..+-.|-+++.. |++...-|... + .-..-.|..+.+ +++..++....| ...+- .+.
T Consensus 282 LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g----g--------~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~ 348 (764)
T KOG1063|consen 282 LLSASADKSMIIWKPDENTGIWVDVVRLGEVG----G--------SAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDK 348 (764)
T ss_pred heecccCcceEEEecCCccceEEEEEEeeccc----c--------cccceeeEEEcC-CCCEEEEecccCcEEEEeccCc
Confidence 5778889999999998885 99876655333 1 012334666778 778888887765 33333 232
Q ss_pred CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCC
Q 046018 78 GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSS 113 (310)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~ 113 (310)
...+.. ...+.-.....+|+.+|.|. ++.+.+.
T Consensus 349 ~~w~~~--~~iSGH~~~V~dv~W~psGe-flLsvs~ 381 (764)
T KOG1063|consen 349 TFWTQE--PVISGHVDGVKDVDWDPSGE-FLLSVSL 381 (764)
T ss_pred cceeec--cccccccccceeeeecCCCC-EEEEecc
Confidence 222211 11122234678999999999 6766643
No 405
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=50.86 E-value=1.7e+02 Score=25.59 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=60.6
Q ss_pred eEEEeCCCCcEEEEECCCceEEE-eCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 51 GIRFDKKTGDLYIADAYLGFQVV-GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~~gi~~~-d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
.....+ ..+|.+.....-.+|+ |.+.. +..+ .-.++- ......+.+..+.+ +.-+.
T Consensus 319 HcstHp-tQrLVvTsSrDtTFRLWDFRea-I~sV-~VFQGH-tdtVTS~vF~~dd~-vVSgS------------------ 375 (481)
T KOG0300|consen 319 HCSTHP-TQRLVVTSSRDTTFRLWDFREA-IQSV-AVFQGH-TDTVTSVVFNTDDR-VVSGS------------------ 375 (481)
T ss_pred ccccCC-cceEEEEeccCceeEeccchhh-ccee-eeeccc-ccceeEEEEecCCc-eeecC------------------
Confidence 455556 6677777666554444 65522 2111 111111 11344556666655 44332
Q ss_pred CCceEEEEeCCCCeEEEEe--cCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 130 KTGRLLKYEKTTKEVTILL--QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~--~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
.+..|-.||...=+ ..++ ......|-++++..+. ++..-..++.|..||++|.
T Consensus 376 DDrTvKvWdLrNMR-splATIRtdS~~NRvavs~g~~-iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 376 DDRTVKVWDLRNMR-SPLATIRTDSPANRVAVSKGHP-IIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred CCceEEEeeecccc-CcceeeecCCccceeEeecCCc-eEEeccCCceEEEEecCCC
Confidence 25567788875321 1121 2234568899998776 5555578899999999875
No 406
>PLN02153 epithiospecifier protein
Probab=50.70 E-value=1.8e+02 Score=25.63 Aligned_cols=82 Identities=13% Similarity=0.098 Sum_probs=43.1
Q ss_pred eEEEeCCCCcEEEEECC--------CceEEEeCCCCeEEEEEeecCCccccCCcce-EEeCCCCEEEEEeCCCchhhhhh
Q 046018 51 GIRFDKKTGDLYIADAY--------LGFQVVGPEGGLATQLVTEAAGQPLRFTNDL-DIDEHKGVIYFTDSSTSFQRRQF 121 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~--------~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i-~~d~~g~~l~v~~~~~~~~~~~~ 121 (310)
+++.. +++|||.... ..++++|+.+.+.+.+.... ..+.....+. ++.-+++ ||+-.-...
T Consensus 27 ~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~p~~~~~~~~~~~~~~~-iyv~GG~~~------ 96 (341)
T PLN02153 27 GIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANG-DVPRISCLGVRMVAVGTK-LYIFGGRDE------ 96 (341)
T ss_pred eEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccC-CCCCCccCceEEEEECCE-EEEECCCCC------
Confidence 44443 4689986432 13888999887665432211 1111111122 2233455 887642110
Q ss_pred hhhhhcCCCCceEEEEeCCCCeEEEEe
Q 046018 122 MSSILSGDKTGRLLKYEKTTKEVTILL 148 (310)
Q Consensus 122 ~~~~~~~~~~g~v~~~d~~~~~~~~~~ 148 (310)
......+++||+++.+++.+.
T Consensus 97 ------~~~~~~v~~yd~~t~~W~~~~ 117 (341)
T PLN02153 97 ------KREFSDFYSYDTVKNEWTFLT 117 (341)
T ss_pred ------CCccCcEEEEECCCCEEEEec
Confidence 011346899999988887654
No 407
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=48.35 E-value=54 Score=19.05 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=22.1
Q ss_pred eeceEEEeCCCCcEEEEECCCceEEEeCCCC
Q 046018 48 RPLGIRFDKKTGDLYIADAYLGFQVVGPEGG 78 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~~gi~~~d~~~~ 78 (310)
...++++. ++.+|+++...|+..+|...-
T Consensus 3 ~a~~v~v~--g~yaYva~~~~Gl~IvDISnP 31 (42)
T PF08309_consen 3 DARDVAVS--GNYAYVADGNNGLVIVDISNP 31 (42)
T ss_pred eEEEEEEE--CCEEEEEeCCCCEEEEECCCC
Confidence 44567775 479999988889998887654
No 408
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=47.63 E-value=2e+02 Score=25.31 Aligned_cols=50 Identities=14% Similarity=0.320 Sum_probs=27.5
Q ss_pred ceEEEEeCCCCeEEEEecCCccc-ceEEE-ecCCCeEEEEecC------CceEEEEEcc
Q 046018 132 GRLLKYEKTTKEVTILLQGLAFA-NGVAL-SRDRTFILIAETS------NCRILRFWLH 182 (310)
Q Consensus 132 g~v~~~d~~~~~~~~~~~~~~~~-~gi~~-~~d~~~lyv~~~~------~~~i~~~~~~ 182 (310)
..+.+||+.+.+++.+..-...+ .+.++ .-+++ ||+..-. +..++.|+++
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~~y~~~ 225 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNK-LLLINGEIKPGLRTAEVKQYLFT 225 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCE-EEEEeeeeCCCccchheEEEEec
Confidence 56999999998888754322112 22222 23454 8875321 1245566654
No 409
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=47.12 E-value=3.4e+02 Score=27.96 Aligned_cols=60 Identities=10% Similarity=0.032 Sum_probs=40.7
Q ss_pred ceeceEEEeCCCCcEEEEECCCceEEE----eCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEe
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLGFQVV----GPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTD 111 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~gi~~~----d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~ 111 (310)
..+.++..-++...|.++...+.|..+ ++++..++.+... ...+..++.+||+..+.+++
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-----d~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV-----DSGILAASWSPDEELLALVT 139 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-----cCcEEEEEECCCcCEEEEEe
Confidence 466678777756678888777668777 7776666544322 12467788999998555555
No 410
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=44.77 E-value=1.6e+02 Score=24.59 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=44.9
Q ss_pred CcceEEeC-CCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEe-c----CC-cccceEEEecCCCeEE
Q 046018 95 TNDLDIDE-HKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILL-Q----GL-AFANGVALSRDRTFIL 167 (310)
Q Consensus 95 ~~~i~~d~-~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~-~----~~-~~~~gi~~~~d~~~ly 167 (310)
.-+|.+-| +|+ ||.-. ..++||.+|+.++....+. . .+ ..+-++-|.|-=.+|-
T Consensus 29 l~GID~Rpa~G~-LYgl~------------------~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlR 89 (236)
T PF14339_consen 29 LVGIDFRPANGQ-LYGLG------------------STGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLR 89 (236)
T ss_pred EEEEEeecCCCC-EEEEe------------------CCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEE
Confidence 44555544 566 88764 2789999999999887662 1 11 2256778888544576
Q ss_pred EEecCCceEEEEEccCC
Q 046018 168 IAETSNCRILRFWLHGP 184 (310)
Q Consensus 168 v~~~~~~~i~~~~~~~~ 184 (310)
+.. .+++=+|++++.+
T Consensus 90 vvs-~~GqNlR~npdtG 105 (236)
T PF14339_consen 90 VVS-NTGQNLRLNPDTG 105 (236)
T ss_pred EEc-cCCcEEEECCCCC
Confidence 653 3566678888744
No 411
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=44.75 E-value=2.6e+02 Score=25.92 Aligned_cols=49 Identities=10% Similarity=0.040 Sum_probs=25.5
Q ss_pred CCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCC-CeeEECCCCCEEEEEecCC
Q 046018 163 RTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFP-DNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 163 ~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p-~~i~~d~~G~l~va~~~~~ 218 (310)
|..|.+. .++.|..||...+ ..+....-.+ ..+.++++|++.+-.....
T Consensus 117 G~LL~~~--~~~~i~~yDw~~~-----~~i~~i~v~~vk~V~Ws~~g~~val~t~~~ 166 (443)
T PF04053_consen 117 GNLLGVK--SSDFICFYDWETG-----KLIRRIDVSAVKYVIWSDDGELVALVTKDS 166 (443)
T ss_dssp SSSEEEE--ETTEEEEE-TTT-------EEEEESS-E-EEEEE-TTSSEEEEE-S-S
T ss_pred CcEEEEE--CCCCEEEEEhhHc-----ceeeEEecCCCcEEEEECCCCEEEEEeCCe
Confidence 6645554 3457999998743 2333322223 7888888887755544433
No 412
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=42.37 E-value=2.9e+02 Score=25.90 Aligned_cols=118 Identities=10% Similarity=0.086 Sum_probs=66.2
Q ss_pred eEEEeCCCCcEEEEECCCceEEEeCCC-CeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCC
Q 046018 51 GIRFDKKTGDLYIADAYLGFQVVGPEG-GLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGD 129 (310)
Q Consensus 51 gl~~d~~~g~l~v~~~~~gi~~~d~~~-~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 129 (310)
...++| .|+.++..+..+|..+.-.. .++.++.. .....+-++|.+. ..++=+...- .....+...-.
T Consensus 37 ~~~~SP-~G~~l~~~~~~~V~~~~g~~~~~l~~~~~-------~~V~~~~fSP~~k-YL~tw~~~pi--~~pe~e~sp~~ 105 (561)
T COG5354 37 YVSESP-LGTYLFSEHAAGVECWGGPSKAKLVRFRH-------PDVKYLDFSPNEK-YLVTWSREPI--IEPEIEISPFT 105 (561)
T ss_pred heeecC-cchheehhhccceEEccccchhheeeeec-------CCceecccCcccc-eeeeeccCCc--cChhhccCCcc
Confidence 567788 88877777777888775433 23333321 2456677888887 4444221100 00011111111
Q ss_pred CCceEEEEeCCCCeEEEEecCCccc----ceEEEecCCCeEEEEecCCceEEEEEc
Q 046018 130 KTGRLLKYEKTTKEVTILLQGLAFA----NGVALSRDRTFILIAETSNCRILRFWL 181 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~~~~~~~----~gi~~~~d~~~lyv~~~~~~~i~~~~~ 181 (310)
....+++||-.+|.+..-......| +-+-++.|.+ |++-...+.|++++.
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~--y~ARvv~~sl~i~e~ 159 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDK--YVARVVGSSLYIHEI 159 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecch--hhhhhccCeEEEEec
Confidence 2336999999888766543333334 2456777764 555556678888885
No 413
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=42.15 E-value=4e+02 Score=27.28 Aligned_cols=107 Identities=8% Similarity=0.094 Sum_probs=54.5
Q ss_pred CCcEEEEECCCceEEEeCCCCeEEEEEeecC-CccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLATQLVTEAA-GQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLK 136 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~ 136 (310)
+.+++++...+.+...|...+.+- .+... ..-.-++.-+..+.... +|+... ...+.|+.
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~--~~i~~~er~~l~~~~~~g~s~~~-~~i~~g----------------sv~~~iiv 159 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVL--SKIQSDERCTLYSSLIIGDSAEE-LYIASG----------------SVFGEIIV 159 (967)
T ss_pred cceEEEEEcCceEEEEecccCcee--hhcCCCceEEEEeEEEEeccCcE-EEEEec----------------cccccEEE
Confidence 456666666655555555544321 11111 11111233344444444 776652 24667887
Q ss_pred EeCCCCeEEE-EecCCcccceEEEecCCCeEEEEecCCceEEEEEccCC
Q 046018 137 YEKTTKEVTI-LLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 137 ~d~~~~~~~~-~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
|.+....... +....+.+-.|.++.||+.+. +-+.++.+..|+++..
T Consensus 160 W~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~-s~SdDRsiRlW~i~s~ 207 (967)
T KOG0974|consen 160 WKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIA-SVSDDRSIRLWPIDSR 207 (967)
T ss_pred EeccccCCcceecccCCceEEEEEccCCcEEE-EEecCcceeeeecccc
Confidence 7764211111 111223456677777888544 4467788888887754
No 414
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=40.30 E-value=1.7e+02 Score=30.57 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=47.0
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCC
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSN 173 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~ 173 (310)
.+-++.+-.+++.+.+.+ ..|.+...|+++...+.+.....+...++|+||++.+.++ ++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~------------------~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~li-T~~ 130 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVIT------------------ALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALI-TGR 130 (1265)
T ss_pred ceEEEEEecccceEEEEe------------------cCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEE-eCC
Confidence 344555555665466665 3677888899988888776556667788999999966555 555
Q ss_pred ceEEEEE
Q 046018 174 CRILRFW 180 (310)
Q Consensus 174 ~~i~~~~ 180 (310)
+.|....
T Consensus 131 ~tll~mT 137 (1265)
T KOG1920|consen 131 QTLLFMT 137 (1265)
T ss_pred cEEEEEe
Confidence 6665543
No 415
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=39.01 E-value=1.2e+02 Score=25.52 Aligned_cols=64 Identities=9% Similarity=0.140 Sum_probs=0.0
Q ss_pred eEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEE
Q 046018 98 LDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRIL 177 (310)
Q Consensus 98 i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~ 177 (310)
|+.+..+++|++++ +.+|+.++.+...............-|++-++-+.|++-.. +.|+
T Consensus 1 ~c~~~~~~~L~vGt-------------------~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd--~~l~ 59 (275)
T PF00780_consen 1 VCADSWGDRLLVGT-------------------EDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSD--GQLY 59 (275)
T ss_pred CCcccCCCEEEEEE-------------------CCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEcC--CccE
Q ss_pred EEEcc
Q 046018 178 RFWLH 182 (310)
Q Consensus 178 ~~~~~ 182 (310)
.++++
T Consensus 60 ~~~L~ 64 (275)
T PF00780_consen 60 VYDLD 64 (275)
T ss_pred EEEch
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=38.81 E-value=2.4e+02 Score=23.73 Aligned_cols=147 Identities=13% Similarity=0.087 Sum_probs=75.6
Q ss_pred eeceEEEeCCCCcEE-EEE--CC-CceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhh
Q 046018 48 RPLGIRFDKKTGDLY-IAD--AY-LGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMS 123 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~-v~~--~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~ 123 (310)
.+...++++ +|..+ +.. .. ..++.....+.. ..+. .+. ....-.++++|. +|+.....
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~-~~~~---~g~---~l~~PS~d~~g~-~W~v~~~~--------- 86 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPV-RPVL---TGG---SLTRPSWDPDGW-VWTVDDGS--------- 86 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcc-eeec---cCC---ccccccccCCCC-EEEEEcCC---------
Confidence 456788888 55543 333 12 236666555433 2222 122 233447889988 99987531
Q ss_pred hhhcCCCCceEEEEeCCCCeEEEEe---cCCc-ccceEEEecCCCeEEEEe--cCCceEEEEEccCCCCCcceee-----
Q 046018 124 SILSGDKTGRLLKYEKTTKEVTILL---QGLA-FANGVALSRDRTFILIAE--TSNCRILRFWLHGPNSGKQDVF----- 192 (310)
Q Consensus 124 ~~~~~~~~g~v~~~d~~~~~~~~~~---~~~~-~~~gi~~~~d~~~lyv~~--~~~~~i~~~~~~~~~~~~~~~~----- 192 (310)
....+.+ +..+++..... .... ....+.++|||.++-+.- ...++|++--......+....+
T Consensus 87 ------~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~ 159 (253)
T PF10647_consen 87 ------GGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRR 159 (253)
T ss_pred ------CceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceE
Confidence 1122332 32233333221 1122 457899999999874443 2346777665431111101111
Q ss_pred -e-eCCCCCCeeEECCCCCEEEEEecCCc
Q 046018 193 -A-ELPGFPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 193 -~-~~~~~p~~i~~d~~G~l~va~~~~~~ 219 (310)
. ........+....++.|.|.......
T Consensus 160 ~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 160 VAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred ecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 1 11123456888888888888766553
No 417
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=38.57 E-value=1.5e+02 Score=21.49 Aligned_cols=90 Identities=17% Similarity=0.158 Sum_probs=48.2
Q ss_pred CcEEEEECCCceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEe
Q 046018 59 GDLYIADAYLGFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYE 138 (310)
Q Consensus 59 g~l~v~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d 138 (310)
.+|.|+.....|..+.-+.- +..+ .. ...+..++....+++.|... +|.|-.|+
T Consensus 16 ~eLlvGs~D~~IRvf~~~e~-~~Ei-~e-----~~~v~~L~~~~~~~F~Y~l~-------------------NGTVGvY~ 69 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGDEI-VAEI-TE-----TDKVTSLCSLGGGRFAYALA-------------------NGTVGVYD 69 (111)
T ss_pred ceEEEecCCcEEEEEeCCcE-EEEE-ec-----ccceEEEEEcCCCEEEEEec-------------------CCEEEEEe
Confidence 57888877766777765421 1112 11 12455666666676444443 78888887
Q ss_pred CCCCeEEEEecCCcccceEEEec---CCCeEEEEecCCceE
Q 046018 139 KTTKEVTILLQGLAFANGVALSR---DRTFILIAETSNCRI 176 (310)
Q Consensus 139 ~~~~~~~~~~~~~~~~~gi~~~~---d~~~lyv~~~~~~~i 176 (310)
.....++. .....|..++... ||..-+++...+++|
T Consensus 70 ~~~RlWRi--KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 70 RSQRLWRI--KSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred Ccceeeee--ccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 64333332 2334466665543 333334444666665
No 418
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=37.78 E-value=3.6e+02 Score=25.57 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=32.8
Q ss_pred cceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCCCEEEEEecCC
Q 046018 154 ANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 154 ~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~va~~~~~ 218 (310)
.|-++..|... +-++.-.+..|..+|...+..- ....+. +...+++++|++|-........+
T Consensus 492 in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~~l-~s~~a~-~~svtslai~~ng~~l~s~s~d~ 553 (577)
T KOG0642|consen 492 INKVVSHPTAD-ITFTAHEDRSIRFFDNKTGKIL-HSMVAH-KDSVTSLAIDPNGPYLMSGSHDG 553 (577)
T ss_pred cceEEecCCCC-eeEecccCCceecccccccccc-hheeec-cceecceeecCCCceEEeecCCc
Confidence 34555566555 4444466678877775432111 111111 12347899999995444444333
No 419
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=37.16 E-value=1.2e+02 Score=25.91 Aligned_cols=28 Identities=4% Similarity=0.048 Sum_probs=17.5
Q ss_pred cceEEEecC-CCeEEEEecCCceEEEEEcc
Q 046018 154 ANGVALSRD-RTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 154 ~~gi~~~~d-~~~lyv~~~~~~~i~~~~~~ 182 (310)
.+.+.|.|. +..|+.+ +..+.+|.||..
T Consensus 226 i~eV~FHpk~p~~Lft~-sedGslw~wdas 254 (319)
T KOG4714|consen 226 IWEVHFHPKNPEHLFTC-SEDGSLWHWDAS 254 (319)
T ss_pred hhheeccCCCchheeEe-cCCCcEEEEcCC
Confidence 355666663 4456665 566788888754
No 420
>PF13964 Kelch_6: Kelch motif
Probab=36.70 E-value=77 Score=18.64 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=14.7
Q ss_pred CceEEEEeCCCCeEEEEe
Q 046018 131 TGRLLKYEKTTKEVTILL 148 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~ 148 (310)
...+++||+++++.+.+.
T Consensus 27 ~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 27 SNDVERYDPETNTWEQLP 44 (50)
T ss_pred cccEEEEcCCCCcEEECC
Confidence 567999999999888653
No 421
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=34.95 E-value=1.3e+02 Score=32.50 Aligned_cols=22 Identities=32% Similarity=0.802 Sum_probs=18.2
Q ss_pred cccCcEEEEEeCCCCCeEEEEE
Q 046018 5 GVADGRILKWQGDELGWTEFAV 26 (310)
Q Consensus 5 ~~~~~~i~~~~~~~~~W~~~~~ 26 (310)
++.++.|-+||.-+++|.+...
T Consensus 619 ~L~~G~i~~wD~ttq~W~~~~~ 640 (1774)
T PF11725_consen 619 GLQDGKIQYWDSTTQCWKDAGV 640 (1774)
T ss_pred eeccceEeeecCcchhhhhccC
Confidence 5678999999999999997544
No 422
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=34.20 E-value=2.6e+02 Score=22.93 Aligned_cols=15 Identities=13% Similarity=0.257 Sum_probs=12.1
Q ss_pred CceEEEEeCCCCeEE
Q 046018 131 TGRLLKYEKTTKEVT 145 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~ 145 (310)
.|.++.||..+++..
T Consensus 31 ~G~l~vWnl~~~k~~ 45 (219)
T PF07569_consen 31 SGLLYVWNLKKGKAV 45 (219)
T ss_pred CCeEEEEECCCCeec
Confidence 788999999876554
No 423
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=32.75 E-value=4.4e+02 Score=25.44 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=44.6
Q ss_pred cCCcccceEEEecCCCeEEEEecCCceEEEEEccCCCCCcceeee-eCCCCCCeeEECCCCCEEEE
Q 046018 149 QGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPNSGKQDVFA-ELPGFPDNVRSNSNGEFWVA 213 (310)
Q Consensus 149 ~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~l~va 213 (310)
++.--|.=|||++..+.+-|++..-+.|.+|..-.....+.+... +....|-|++|=.|..|.+-
T Consensus 336 PGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLil 401 (671)
T PF15390_consen 336 PGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLIL 401 (671)
T ss_pred ccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEE
Confidence 445568899999999878888777789999987643222333322 22357999999888865553
No 424
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=32.19 E-value=4.2e+02 Score=27.05 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=32.1
Q ss_pred ceEEEEeCCCCeEEEE-ecCCcccceEEEecCCCeEEE-Eec----CCceEEEEEccCCCCC
Q 046018 132 GRLLKYEKTTKEVTIL-LQGLAFANGVALSRDRTFILI-AET----SNCRILRFWLHGPNSG 187 (310)
Q Consensus 132 g~v~~~d~~~~~~~~~-~~~~~~~~gi~~~~d~~~lyv-~~~----~~~~i~~~~~~~~~~~ 187 (310)
++|...|.++...+.+ .......-...++|||+.|-+ +.. +...||+-++++...+
T Consensus 329 ~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~ 390 (912)
T TIGR02171 329 GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSG 390 (912)
T ss_pred CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCC
Confidence 4677777665555544 222222223459999998754 322 2346999988754333
No 425
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=31.77 E-value=4.2e+02 Score=24.50 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=29.2
Q ss_pred CceEEEEeCCCCeEEEEecCCccc--ce---EEEecCCCeEEEEecCC----ceEEEEEccCC
Q 046018 131 TGRLLKYEKTTKEVTILLQGLAFA--NG---VALSRDRTFILIAETSN----CRILRFWLHGP 184 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~~~--~g---i~~~~d~~~lyv~~~~~----~~i~~~~~~~~ 184 (310)
...+..+|..++++..+. +++.. ++ -.+..+|+ +|+.-+.. ..||++|+.+.
T Consensus 366 ~~~laI~d~~~kt~t~V~-glP~~~is~~~~~~~ve~G~-aYi~Vtt~~g~~~~IY~iDp~Ta 426 (435)
T PF14298_consen 366 AKKLAIFDVSNKTFTWVT-GLPADLISGFGNAPYVENGK-AYIPVTTEDGSDPYIYKIDPATA 426 (435)
T ss_pred cceEEEEEccCceeEEec-cCChhhccccccceEeeCCE-EEEEEeecCCCceeEEEEcCccc
Confidence 445778888888877653 23222 22 23344554 77754422 45777777644
No 426
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.55 E-value=1.1e+02 Score=29.99 Aligned_cols=111 Identities=16% Similarity=0.157 Sum_probs=58.2
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSI 125 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~ 125 (310)
..+..+.++. ...|..+....| |-.+|.+.++.-+... +.. ..+..+.+.|-|. .. +...
T Consensus 71 spIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLt---gh~-~~~~sv~f~P~~~-~~-a~gS------------ 131 (825)
T KOG0267|consen 71 SPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLT---GHL-LNITSVDFHPYGE-FF-ASGS------------ 131 (825)
T ss_pred CcceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhh---ccc-cCcceeeeccceE-Ee-cccc------------
Confidence 3455788888 667777767766 5556887665322111 211 1345677888876 33 2211
Q ss_pred hcCCCCceEEEEeCCCCeEEEEe-cCCcccceEEEecCCCeEEEEecCC-ceEEEEEcc
Q 046018 126 LSGDKTGRLLKYEKTTKEVTILL-QGLAFANGVALSRDRTFILIAETSN-CRILRFWLH 182 (310)
Q Consensus 126 ~~~~~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~-~~i~~~~~~ 182 (310)
.+..+..||....-+.... ......+-+.++|||+ |+++.++ +.+.+||..
T Consensus 132 ----tdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr--~v~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 132 ----TDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR--WVASGGEDNTVKIWDLT 184 (825)
T ss_pred ----ccccceehhhhccCceeeecCCcceeEEEeecCCCc--eeeccCCcceeeeeccc
Confidence 1233444443211111111 1122346788999997 3443443 677777763
No 427
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=29.75 E-value=7.1e+02 Score=26.52 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=28.7
Q ss_pred EEEEecCCceEEEEEccCCCCCcceeeee-CCCCCCeeEECCCCCEEEEEecCC
Q 046018 166 ILIAETSNCRILRFWLHGPNSGKQDVFAE-LPGFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 166 lyv~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~p~~i~~d~~G~l~va~~~~~ 218 (310)
+++..+..++|..||+...... ...-.+ ..|....+++|+.++..+.....+
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~-w~lk~~~~hG~vTSi~idp~~~WlviGts~G 1217 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDA-WRLKNQLRHGLVTSIVIDPWCNWLVIGTSRG 1217 (1431)
T ss_pred eEEEEEeccceEEecchhhhhH-HhhhcCccccceeEEEecCCceEEEEecCCc
Confidence 4444467789999987532100 011111 226678899999998433333333
No 428
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=28.61 E-value=3.6e+02 Score=22.75 Aligned_cols=142 Identities=12% Similarity=0.068 Sum_probs=71.6
Q ss_pred CCcEEEEECC-CceEEEeCCCCeEEEEEeecCC-----c----cccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 58 TGDLYIADAY-LGFQVVGPEGGLATQLVTEAAG-----Q----PLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 58 ~g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~-----~----~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
+|.||.--.. ..|.++|..++.+..-...+.. . ....--++|+|..| ||+-=...
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G--LWvIYat~------------- 142 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG--LWVIYATE------------- 142 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC--EEEEEecC-------------
Confidence 4566665554 3599999998876521111100 0 11123578888777 78764321
Q ss_pred CCCCc--eEEEEeCCCCeEEEEe-cCCcc---cceEEEecCCCeEEEEecCC----ceEEEEEccCCCCCccee-eeeCC
Q 046018 128 GDKTG--RLLKYEKTTKEVTILL-QGLAF---ANGVALSRDRTFILIAETSN----CRILRFWLHGPNSGKQDV-FAELP 196 (310)
Q Consensus 128 ~~~~g--~v~~~d~~~~~~~~~~-~~~~~---~~gi~~~~d~~~lyv~~~~~----~~i~~~~~~~~~~~~~~~-~~~~~ 196 (310)
...| -|.++|+++-.++.-. ..... .+...++ |. ||++++.+ .--+.||...++.....+ +....
T Consensus 143 -~~~g~ivvskld~~tL~v~~tw~T~~~k~~~~naFmvC--Gv-LY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~ 218 (250)
T PF02191_consen 143 -DNNGNIVVSKLDPETLSVEQTWNTSYPKRSAGNAFMVC--GV-LYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPY 218 (250)
T ss_pred -CCCCcEEEEeeCcccCceEEEEEeccCchhhcceeeEe--eE-EEEEEECCCCCcEEEEEEECCCCceeceeeeecccc
Confidence 1233 3567888765554322 22222 2333333 44 89987764 234666765432222222 11222
Q ss_pred CCCCeeEECCCCCEEEEEecCC
Q 046018 197 GFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 197 ~~p~~i~~d~~G~l~va~~~~~ 218 (310)
+....+..+|..+...+-..+.
T Consensus 219 ~~~~~l~YNP~dk~LY~wd~G~ 240 (250)
T PF02191_consen 219 GNISMLSYNPRDKKLYAWDNGY 240 (250)
T ss_pred CceEeeeECCCCCeEEEEECCe
Confidence 3445677777664333333334
No 429
>PF11161 DUF2944: Protein of unknown function (DUF2946); InterPro: IPR021332 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=28.26 E-value=1.8e+02 Score=23.23 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=33.5
Q ss_pred CeEEEEecCCceEEEEEccCCCCCcceeeeeCC-CCCCeeEECCCCCEEEEEecCC
Q 046018 164 TFILIAETSNCRILRFWLHGPNSGKQDVFAELP-GFPDNVRSNSNGEFWVALHAKK 218 (310)
Q Consensus 164 ~~lyv~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~G~l~va~~~~~ 218 (310)
.++||....+--|++....+... ....-+..+ ..+....+|.+|++|+.+..+-
T Consensus 75 QRVYV~Le~tP~v~Rl~~~~~~~-~l~thTg~~~~~~~~~~lDe~G~l~l~t~~g~ 129 (187)
T PF11161_consen 75 QRVYVELEYTPWVWRLQPEGGDL-GLVTHTGAPFEAPRACWLDEQGRLYLATPLGV 129 (187)
T ss_pred EEEEEEeccCceEEEeccCCCCC-ceeecCCCcccchhheeECCCCCEEEecCCce
Confidence 35888777778888877632211 111111122 2378899999999999966554
No 430
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=27.24 E-value=6e+02 Score=24.84 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=19.9
Q ss_pred CCcEEEEECCCceEEEeCCCCeE
Q 046018 58 TGDLYIADAYLGFQVVGPEGGLA 80 (310)
Q Consensus 58 ~g~l~v~~~~~gi~~~d~~~~~~ 80 (310)
++.||+++.++.++.+|.++++.
T Consensus 214 gdtlYvcTphn~v~ALDa~TGke 236 (773)
T COG4993 214 GDTLYVCTPHNRVFALDAATGKE 236 (773)
T ss_pred CCEEEEecCcceeEEeeccCCce
Confidence 56899999988899999999874
No 431
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=27.09 E-value=5.5e+02 Score=24.41 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=13.2
Q ss_pred eeEEEEeCCEEEEecCCC-CeEEEecc
Q 046018 282 ISEVEEKDGQLWMGSVLM-PFIGIYNR 307 (310)
Q Consensus 282 ~~~~~~~~g~l~vgs~~~-~~i~~~~~ 307 (310)
+.++-..+++.|+-++.. |=+.++|+
T Consensus 328 IysvRF~Gd~~Y~VTFrqvDPLfviDL 354 (521)
T PF09826_consen 328 IYSVRFMGDRAYLVTFRQVDPLFVIDL 354 (521)
T ss_pred EEEEEEeCCeEEEEEEeecCceEEEEC
Confidence 444445566666665533 44444443
No 432
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=26.98 E-value=2.3e+02 Score=27.63 Aligned_cols=29 Identities=7% Similarity=0.146 Sum_probs=20.8
Q ss_pred cceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 154 ANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 154 ~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
...++|++|+..+|..+. .+.|....++.
T Consensus 127 VTal~Ws~~~~k~ysGD~-~Gkv~~~~L~s 155 (726)
T KOG3621|consen 127 VTALEWSKNGMKLYSGDS-QGKVVLTELDS 155 (726)
T ss_pred EEEEEecccccEEeecCC-CceEEEEEech
Confidence 457899999999998865 45666555543
No 433
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.96 E-value=4.9e+02 Score=23.72 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=13.5
Q ss_pred ceEEEecCCCeEEEEe
Q 046018 155 NGVALSRDRTFILIAE 170 (310)
Q Consensus 155 ~gi~~~~d~~~lyv~~ 170 (310)
.+++++||++.||...
T Consensus 203 Eglait~d~~~L~~~l 218 (391)
T COG4222 203 EGLAITPDGKKLYALL 218 (391)
T ss_pred eeEEecCCCceEEEEE
Confidence 4899999999998764
No 434
>PF14977 FAM194: FAM194 protein
Probab=26.72 E-value=3.6e+02 Score=22.10 Aligned_cols=21 Identities=24% Similarity=0.585 Sum_probs=17.5
Q ss_pred CCeeEECCCCCEEEEEecCCc
Q 046018 199 PDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 199 p~~i~~d~~G~l~va~~~~~~ 219 (310)
-.+.+.++.|++|+..+..+.
T Consensus 68 G~g~~y~~~g~~~l~l~~~gG 88 (208)
T PF14977_consen 68 GHGTCYHPNGNIWLVLNQEGG 88 (208)
T ss_pred CCEEEEcCCCCEEEEEECCCC
Confidence 378899999999999887664
No 435
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=26.47 E-value=3.5e+02 Score=23.75 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=48.0
Q ss_pred EEEeCCCCcEEEEECCC-ceEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCC
Q 046018 52 IRFDKKTGDLYIADAYL-GFQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDK 130 (310)
Q Consensus 52 l~~d~~~g~l~v~~~~~-gi~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~ 130 (310)
++++..+++|++++.++ |..++ +.+++ .+....+--..+.|..++.-|.+..-|+++.. .
T Consensus 174 ~~l~~~~~~Lh~aNLGDSGF~Vv--R~G~v-v~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p----------------~ 234 (330)
T KOG1379|consen 174 LALDRENGKLHTANLGDSGFLVV--REGKV-VFRSPEQQHYFNTPYQLSSPPEGYSSYISDVP----------------D 234 (330)
T ss_pred eeeecCCCeEEEeeccCcceEEE--ECCEE-EEcCchheeccCCceeeccCCccccccccCCc----------------c
Confidence 44554478899998874 42222 12443 12222222345678888888777655666533 3
Q ss_pred CceEEEEeCCCCeEEEEecCCcc
Q 046018 131 TGRLLKYEKTTKEVTILLQGLAF 153 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~~ 153 (310)
.+..+.++.+.|.+..+.++..+
T Consensus 235 ~ad~~~~~v~~GDvIilATDGlf 257 (330)
T KOG1379|consen 235 SADVTSFDVQKGDVIILATDGLF 257 (330)
T ss_pred ccceEEEeccCCCEEEEeccccc
Confidence 55677888777777766655443
No 436
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=26.40 E-value=98 Score=28.50 Aligned_cols=52 Identities=6% Similarity=0.181 Sum_probs=33.4
Q ss_pred CceEEEEeCCCC-eEEEEe-cCCcccceEEEecCCCeEEEEecCCceEEEEEccC
Q 046018 131 TGRLLKYEKTTK-EVTILL-QGLAFANGVALSRDRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 131 ~g~v~~~d~~~~-~~~~~~-~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
.-++.+.++... +.+... ...--|.||.+++||- .|+++..++.+..+++.+
T Consensus 444 ~~~ilvi~~~n~~~l~~~g~~~fylphgl~~dkdgf-~~~tdvash~v~k~k~~~ 497 (501)
T KOG3567|consen 444 EDTILVIDPNNAAVLQSSGKNLFYLPHGLSIDKDGF-YWVTDVASHQVFKLKPNN 497 (501)
T ss_pred cceEEEEcCcchhhhhhccCCceecCCcceecCCCc-EEeecccchhhhhccccc
Confidence 445677776522 122111 1122389999999985 888998888888887654
No 437
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=24.67 E-value=5.6e+02 Score=23.62 Aligned_cols=96 Identities=10% Similarity=0.121 Sum_probs=48.4
Q ss_pred eEEEeCCCCeEEEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCe-----E
Q 046018 70 FQVVGPEGGLATQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKE-----V 144 (310)
Q Consensus 70 i~~~d~~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~-----~ 144 (310)
|+.||.++-+...+-.....+.-..-..+++.|+|. |++=.-. ......-+...+....-.+.+++++++ +
T Consensus 209 vy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~-i~vyGGY---sK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W 284 (521)
T KOG1230|consen 209 VYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGG-IVVYGGY---SKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVW 284 (521)
T ss_pred eEEEeccceeeeeccCCCCCCCCCCcceEEecCCCc-EEEEcch---hHhhhhhhhhcCceeeeeeeecCCcCCCcceeE
Confidence 888899987766553322122223445788889998 7764311 100011111111222235666666542 1
Q ss_pred EEEecCCccc-----ceEEEecCCCeEEEE
Q 046018 145 TILLQGLAFA-----NGVALSRDRTFILIA 169 (310)
Q Consensus 145 ~~~~~~~~~~-----~gi~~~~d~~~lyv~ 169 (310)
..+.+....| -++++.+.++.|++.
T Consensus 285 ~kvkp~g~kPspRsgfsv~va~n~kal~FG 314 (521)
T KOG1230|consen 285 TKVKPSGVKPSPRSGFSVAVAKNHKALFFG 314 (521)
T ss_pred eeccCCCCCCCCCCceeEEEecCCceEEec
Confidence 2222222222 368888888877664
No 438
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=23.13 E-value=4e+02 Score=24.91 Aligned_cols=129 Identities=11% Similarity=0.103 Sum_probs=59.4
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeEEEEEeec--CCccccCCcceEEeCCCCEEEEEeCC-Cchhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLATQLVTEA--AGQPLRFTNDLDIDEHKGVIYFTDSS-TSFQRRQFM 122 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~~~~~~~~--~~~~~~~~~~i~~d~~g~~l~v~~~~-~~~~~~~~~ 122 (310)
+..+-+++.|..-.-+......+ +..+|.+....+.....- ........+.|+++|... -.++..+ ..+.+ .+.
T Consensus 233 g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt-~~faVgG~dqf~R-vYD 310 (559)
T KOG1334|consen 233 GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT-NEFAVGGSDQFAR-VYD 310 (559)
T ss_pred CccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc-cccccCChhhhhh-hhc
Confidence 44556777764444444434433 677777665433222221 111123567889998876 3333322 11111 000
Q ss_pred hhhhcCC-CCceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 123 SSILSGD-KTGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 123 ~~~~~~~-~~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
...+... ..+-+-.+.|.. .+.......-|++++.++.-|.++ -....||.|+..
T Consensus 311 ~R~~~~e~~n~~~~~f~p~h----l~~d~~v~ITgl~Ysh~~sElLaS-YnDe~IYLF~~~ 366 (559)
T KOG1334|consen 311 QRRIDKEENNGVLDKFCPHH----LVEDDPVNITGLVYSHDGSELLAS-YNDEDIYLFNKS 366 (559)
T ss_pred ccchhhccccchhhhcCCcc----ccccCcccceeEEecCCccceeee-ecccceEEeccc
Confidence 0000000 011111111110 011223345689999887767776 345688988654
No 439
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.96 E-value=4.8e+02 Score=22.28 Aligned_cols=53 Identities=25% Similarity=0.162 Sum_probs=33.3
Q ss_pred CCceEEEEeCC-CCeEEEEe--cCCcccceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 130 KTGRLLKYEKT-TKEVTILL--QGLAFANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 130 ~~g~v~~~d~~-~~~~~~~~--~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
..|+++..++. .+.++... .-...--++++++......++.++.+.+..||..
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 36778877774 23333221 1112245789998766566666899999999843
No 440
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.96 E-value=4.9e+02 Score=22.41 Aligned_cols=50 Identities=8% Similarity=0.204 Sum_probs=33.5
Q ss_pred eEEEEeCCCCeEEEEecCCcc-cceEEEecCCCeEEEEec------CCceEEEEEccC
Q 046018 133 RLLKYEKTTKEVTILLQGLAF-ANGVALSRDRTFILIAET------SNCRILRFWLHG 183 (310)
Q Consensus 133 ~v~~~d~~~~~~~~~~~~~~~-~~gi~~~~d~~~lyv~~~------~~~~i~~~~~~~ 183 (310)
.|+.||.++.++..+..+... ...|.+..+.+ ||++.. ....+..||.+.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCC
Confidence 599999988888776555433 46788775444 777643 345677777764
No 441
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=22.83 E-value=4.7e+02 Score=22.09 Aligned_cols=105 Identities=17% Similarity=0.170 Sum_probs=54.2
Q ss_pred CcEEEEECC-CceEEEeCCCCeEEEEEeecCCccccCC----------cceEEeCCCCEEEEEeCCCchhhhhhhhhhhc
Q 046018 59 GDLYIADAY-LGFQVVGPEGGLATQLVTEAAGQPLRFT----------NDLDIDEHKGVIYFTDSSTSFQRRQFMSSILS 127 (310)
Q Consensus 59 g~l~v~~~~-~gi~~~d~~~~~~~~~~~~~~~~~~~~~----------~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~ 127 (310)
|.+|.--.. ..|.+++.+++... -....+......+ .++++|.+| ||+--...
T Consensus 78 Gs~yynk~~t~~ivky~l~~~~~~-~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~G--LWviYat~------------- 141 (249)
T KOG3545|consen 78 GSLYYNKAGTRNIIKYDLETRTVA-GSAALPYAGYHNPSPYYWGGHSDIDLAVDENG--LWVIYATP------------- 141 (249)
T ss_pred ceEEeeccCCcceEEEEeecceee-eeeeccccccCCCcccccCCCccccceecccc--eeEEeccc-------------
Confidence 455555444 34888888864321 1111111112222 788999888 67654321
Q ss_pred CCCCce--EEEEeCCCCeEEEEe----cCCcccceEEEecCCCeEEEEecCC---ceE-EEEEccC
Q 046018 128 GDKTGR--LLKYEKTTKEVTILL----QGLAFANGVALSRDRTFILIAETSN---CRI-LRFWLHG 183 (310)
Q Consensus 128 ~~~~g~--v~~~d~~~~~~~~~~----~~~~~~~gi~~~~d~~~lyv~~~~~---~~i-~~~~~~~ 183 (310)
+..+. |.++|+.+=+++... ......++..++ | .||+..+.+ ..| +.||..+
T Consensus 142 -~~~g~iv~skLdp~tl~~e~tW~T~~~k~~~~~aF~iC--G-vLY~v~S~~~~~~~i~yaydt~~ 203 (249)
T KOG3545|consen 142 -ENAGTIVLSKLDPETLEVERTWNTTLPKRSAGNAFMIC--G-VLYVVHSYNCTHTQISYAYDTTT 203 (249)
T ss_pred -ccCCcEEeeccCHHHhheeeeeccccCCCCcCceEEEe--e-eeEEEeccccCCceEEEEEEcCC
Confidence 12343 357887544443322 223334666666 3 488877653 234 5666653
No 442
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=22.71 E-value=6.2e+02 Score=23.48 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=26.0
Q ss_pred CceEEEEeCCCCeEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEc
Q 046018 131 TGRLLKYEKTTKEVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWL 181 (310)
Q Consensus 131 ~g~v~~~d~~~~~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~ 181 (310)
.+.|+.||.++++...-.+ ......+.|++++..+-++. .+.+++++.
T Consensus 125 ~~~i~~yDw~~~~~i~~i~-v~~vk~V~Ws~~g~~val~t--~~~i~il~~ 172 (443)
T PF04053_consen 125 SDFICFYDWETGKLIRRID-VSAVKYVIWSDDGELVALVT--KDSIYILKY 172 (443)
T ss_dssp TTEEEEE-TTT--EEEEES-S-E-EEEEE-TTSSEEEEE---S-SEEEEEE
T ss_pred CCCEEEEEhhHcceeeEEe-cCCCcEEEEECCCCEEEEEe--CCeEEEEEe
Confidence 4469999998776544332 22247999999998665553 345555543
No 443
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=22.13 E-value=5.7e+02 Score=22.80 Aligned_cols=60 Identities=17% Similarity=0.198 Sum_probs=39.1
Q ss_pred ecCCCeEEEEecCCceEEEEEccCCCCCcceee-eeC-----CCCCCeeEECCCCCEEEEEecCCc
Q 046018 160 SRDRTFILIAETSNCRILRFWLHGPNSGKQDVF-AEL-----PGFPDNVRSNSNGEFWVALHAKKG 219 (310)
Q Consensus 160 ~~d~~~lyv~~~~~~~i~~~~~~~~~~~~~~~~-~~~-----~~~p~~i~~d~~G~l~va~~~~~~ 219 (310)
+-||++++|....+...+.++.+.-+.+..... .++ .-+|.+|..-.+|.+|++...++.
T Consensus 140 ~fDGe~VLvvsR~~~~pHLLkvsdLK~g~inpI~LdlTgVtgGTf~yNmgAl~nGH~Y~asLSG~~ 205 (442)
T PF15416_consen 140 SFDGEHVLVVSRGTTKPHLLKVSDLKAGEINPIPLDLTGVTGGTFSYNMGALVNGHSYLASLSGGK 205 (442)
T ss_pred CCCCcEEEEEecCCCCceeeehhHhhcCCccceeeecccccCcccccchhhhcCCeEEEEeccCCC
Confidence 447888888766666777777654333333222 111 135778877789999999988765
No 444
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=21.85 E-value=8.3e+02 Score=24.64 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=28.4
Q ss_pred CCceEEEEeCCCCeEEEEe-cCCcccceEEEec---CCCeEEEEecCCceEEEEEccC
Q 046018 130 KTGRLLKYEKTTKEVTILL-QGLAFANGVALSR---DRTFILIAETSNCRILRFWLHG 183 (310)
Q Consensus 130 ~~g~v~~~d~~~~~~~~~~-~~~~~~~gi~~~~---d~~~lyv~~~~~~~i~~~~~~~ 183 (310)
..|+|..+|...+...... +.......++|-+ |.+.++.+-.....|..|+.++
T Consensus 87 ~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt 144 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT 144 (1062)
T ss_pred ccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence 4778888887654433222 1111224555544 3334555556666777776654
No 445
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.28 E-value=4.8e+02 Score=22.36 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=21.3
Q ss_pred cceEEEecCCCeEEEEecCCceEEEEEcc
Q 046018 154 ANGVALSRDRTFILIAETSNCRILRFWLH 182 (310)
Q Consensus 154 ~~gi~~~~d~~~lyv~~~~~~~i~~~~~~ 182 (310)
..|+++- ||+ .+|+-..+++|++|...
T Consensus 137 aEGLAvr-dG~-~~VsfEr~hRI~iyp~~ 163 (340)
T COG4246 137 AEGLAVR-DGD-ALVSFERDHRIWIYPVP 163 (340)
T ss_pred cccceEe-cCc-eEEEeeccceeEEeccC
Confidence 4689987 887 67777778899999654
No 446
>PF12275 DUF3616: Protein of unknown function (DUF3616); InterPro: IPR022060 This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.
Probab=21.03 E-value=5.9e+02 Score=22.58 Aligned_cols=18 Identities=22% Similarity=0.253 Sum_probs=14.4
Q ss_pred eeceEEEeCCCCcEEEEECC
Q 046018 48 RPLGIRFDKKTGDLYIADAY 67 (310)
Q Consensus 48 ~p~gl~~d~~~g~l~v~~~~ 67 (310)
.+.||++++ + +||++-..
T Consensus 171 nIEGlA~~~-~-~l~lGfRg 188 (330)
T PF12275_consen 171 NIEGLAVDP-D-RLYLGFRG 188 (330)
T ss_pred CeeeeEecC-C-eEEEEeeC
Confidence 456999988 4 99999765
No 447
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=21.01 E-value=5.6e+02 Score=22.35 Aligned_cols=96 Identities=5% Similarity=0.065 Sum_probs=51.5
Q ss_pred CCcceEEeCCCCEEEEEeCCCchhhhhhhhhhhcCCCCceEEEEeCCCCeEEEEecCCccc----ceEEEecCCCeEEEE
Q 046018 94 FTNDLDIDEHKGVIYFTDSSTSFQRRQFMSSILSGDKTGRLLKYEKTTKEVTILLQGLAFA----NGVALSRDRTFILIA 169 (310)
Q Consensus 94 ~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~~----~gi~~~~d~~~lyv~ 169 (310)
...+|++...+..++++... +|.|..||...-+..++....+.| --+++++..- -|.+
T Consensus 198 EV~DIaf~~~s~~~FASvga-----------------DGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp-nymA 259 (364)
T KOG0290|consen 198 EVYDIAFLKGSRDVFASVGA-----------------DGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP-NYMA 259 (364)
T ss_pred ceeEEEeccCccceEEEecC-----------------CCcEEEEEecccccceEEecCCCCCCcceeeccCcCCc-hHHh
Confidence 46788888877767766543 788888887655444433222222 2455555332 1222
Q ss_pred --ecCCceEEEEEccCCCCCcceeeeeCCCCCCeeEECCCC
Q 046018 170 --ETSNCRILRFWLHGPNSGKQDVFAELPGFPDNVRSNSNG 208 (310)
Q Consensus 170 --~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~i~~d~~G 208 (310)
...+..|.++|+.-... ....+..-.+..++|+..|.-
T Consensus 260 Tf~~dS~~V~iLDiR~P~t-pva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 260 TFAMDSNKVVILDIRVPCT-PVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred hhhcCCceEEEEEecCCCc-ceehhhcCcccccceEecCCC
Confidence 23567888888763211 111111112345777777654
No 448
>PTZ00486 apyrase Superfamily; Provisional
Probab=20.31 E-value=6.3e+02 Score=22.59 Aligned_cols=22 Identities=0% Similarity=-0.047 Sum_probs=16.5
Q ss_pred CCCeEEEEecCCceEEEEEccCC
Q 046018 162 DRTFILIAETSNCRILRFWLHGP 184 (310)
Q Consensus 162 d~~~lyv~~~~~~~i~~~~~~~~ 184 (310)
+++ ||..+..++-|+.++.+++
T Consensus 124 ngk-Lys~DDrTGiVy~i~~~~~ 145 (352)
T PTZ00486 124 NGK-LYGFDDRTGIVYEIDIDKK 145 (352)
T ss_pred CCE-EEEEeCCceEEEEEEcCCC
Confidence 455 8888888888888875543
No 449
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=20.18 E-value=5.9e+02 Score=22.24 Aligned_cols=153 Identities=16% Similarity=0.202 Sum_probs=72.9
Q ss_pred ceeceEEEeCCCCcEEEEECCCc-eEEEeCCCCeE-EEEEeecCCccccCCcceEEeCCCCEEEEEeCCCchhhhhhhhh
Q 046018 47 GRPLGIRFDKKTGDLYIADAYLG-FQVVGPEGGLA-TQLVTEAAGQPLRFTNDLDIDEHKGVIYFTDSSTSFQRRQFMSS 124 (310)
Q Consensus 47 ~~p~gl~~d~~~g~l~v~~~~~g-i~~~d~~~~~~-~~~~~~~~~~~~~~~~~i~~d~~g~~l~v~~~~~~~~~~~~~~~ 124 (310)
.....+++..+.-.+|+.....| +..||.+.-.- +.+...+. +..-.-.++..+..- =|.++-
T Consensus 197 KEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~--~~~pLlRLswnkqDp-nymATf------------ 261 (364)
T KOG0290|consen 197 KEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS--PSTPLLRLSWNKQDP-NYMATF------------ 261 (364)
T ss_pred cceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC--CCCcceeeccCcCCc-hHHhhh------------
Confidence 45567888773446777766655 77777765432 22222211 000111122222221 122221
Q ss_pred hhcCCCCceEEEEeCCCC--eEEEEecCCcccceEEEecCCCeEEEEecCCceEEEEEccCCC--CCcceeee-eCCCCC
Q 046018 125 ILSGDKTGRLLKYEKTTK--EVTILLQGLAFANGVALSRDRTFILIAETSNCRILRFWLHGPN--SGKQDVFA-ELPGFP 199 (310)
Q Consensus 125 ~~~~~~~g~v~~~d~~~~--~~~~~~~~~~~~~gi~~~~d~~~lyv~~~~~~~i~~~~~~~~~--~~~~~~~~-~~~~~p 199 (310)
.+....|..+|...- .+..+.......|||++.|..+.-+.+.-...+...||+.... ...-..++ ...+..
T Consensus 262 ---~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EV 338 (364)
T KOG0290|consen 262 ---AMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEV 338 (364)
T ss_pred ---hcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhcccee
Confidence 123455777764321 1111223334579999999876445554556678888876321 11101111 123455
Q ss_pred CeeEECCCCCEEEEEecC
Q 046018 200 DNVRSNSNGEFWVALHAK 217 (310)
Q Consensus 200 ~~i~~d~~G~l~va~~~~ 217 (310)
+++...+.-.=|+|.-.+
T Consensus 339 Nqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 339 NQIQWSSSQPDWIAICFG 356 (364)
T ss_pred eeeeecccCCCEEEEEec
Confidence 667776555455554433
Done!