BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046022
MQQTKEQDPISSAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANK
VVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDA
PDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENIS
GVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDA
IKCMRAALLHAVPIVKSSGATE

High Scoring Gene Products

Symbol, full name Information P value
AT1G15330 protein from Arabidopsis thaliana 3.7e-71
CBSX6
AT1G65320
protein from Arabidopsis thaliana 3.0e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046022
        (262 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2037853 - symbol:AT1G15330 "AT1G15330" species...   720  3.7e-71   1
TAIR|locus:2206265 - symbol:CBSX6 "AT1G65320" species:370...   100  3.0e-05   2


>TAIR|locus:2037853 [details] [associations]
            symbol:AT1G15330 "AT1G15330" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0003006 "developmental process
            involved in reproduction" evidence=IMP] [GO:0009553 "embryo sac
            development" evidence=IMP] [GO:0009555 "pollen development"
            evidence=IMP] [GO:0010183 "pollen tube guidance" evidence=IMP]
            [GO:0048443 "stamen development" evidence=IMP] InterPro:IPR000644
            Pfam:PF00571 PROSITE:PS51371 SMART:SM00116 EMBL:CP002684
            GO:GO:0009555 GO:GO:0048443 EMBL:AC007591 GO:GO:0009553
            GO:GO:0010183 EMBL:BT023415 EMBL:AK229160 EMBL:BT026513
            IPI:IPI00545829 PIR:F86287 RefSeq:NP_172985.1 UniGene:At.11420
            ProteinModelPortal:Q9XI37 SMR:Q9XI37 PaxDb:Q9XI37 PRIDE:Q9XI37
            ProMEX:Q9XI37 GeneID:838102 KEGG:ath:AT1G15330 TAIR:At1g15330
            eggNOG:NOG272438 HOGENOM:HOG000238797 InParanoid:Q9XI37 OMA:VRKHYIG
            PhylomeDB:Q9XI37 ProtClustDB:CLSN2679465 Genevestigator:Q9XI37
            Uniprot:Q9XI37
        Length = 352

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 149/241 (61%), Positives = 185/241 (76%)

Query:    19 DENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNXXXXXXXXXXXXXXXXGQWIGAGG 78
             +++ RL+     +DLT   RR+VEVP+TA+L+H MN                G WIGAGG
Sbjct:     8 EDHSRLIN-VTAKDLTVRNRRLVEVPYTATLSHAMNTLVANSISALPVAAPPGHWIGAGG 66

Query:    79 SMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGH 138
             SMIMESDKQTG VRKHYIG+LTMLDILAHIAG+D  N SD     LD+KMS+ VSSIIGH
Sbjct:    67 SMIMESDKQTGVVRKHYIGILTMLDILAHIAGEDS-NLSD-----LDRKMSSQVSSIIGH 120

Query:   139 CPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMEN---ISGVELVESASSYQMLT 195
             C EGLSLWTL+PNTS+L+CMEVFSKGIHRALVP++S +E+   I+GVEL+ESAS+Y+MLT
Sbjct:   121 CLEGLSLWTLNPNTSVLECMEVFSKGIHRALVPVESSIESNNTIAGVELIESASAYKMLT 180

Query:   196 QMDLLRFMMNHA-SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPI 254
             QMDLLRF+ +H   +LK + S SI +LGA+N++V+AITE T V +AI  M+ ALL+AVPI
Sbjct:   181 QMDLLRFLKDHHFDDLKTVLSRSISDLGAVNDSVYAITERTTVSNAINVMKGALLNAVPI 240

Query:   255 V 255
             V
Sbjct:   241 V 241


>TAIR|locus:2206265 [details] [associations]
            symbol:CBSX6 "AT1G65320" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0005773 "vacuole"
            evidence=IDA] InterPro:IPR000644 Pfam:PF00571 PROSITE:PS51371
            SMART:SM00116 GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005774 GO:GO:0005773 EMBL:AC004512 EMBL:AK117112
            IPI:IPI00524279 PIR:T02355 RefSeq:NP_176711.1 UniGene:At.35899
            UniGene:At.67954 ProteinModelPortal:Q8GZA4 SMR:Q8GZA4 PaxDb:Q8GZA4
            PRIDE:Q8GZA4 EnsemblPlants:AT1G65320.1 GeneID:842840
            KEGG:ath:AT1G65320 TAIR:At1g65320 eggNOG:NOG311373
            HOGENOM:HOG000238614 InParanoid:Q8GZA4 OMA:KLWKCDY PhylomeDB:Q8GZA4
            ProtClustDB:CLSN2679616 Genevestigator:Q8GZA4 Uniprot:Q8GZA4
        Length = 425

 Score = 100 (40.3 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
 Identities = 23/80 (28%), Positives = 43/80 (53%)

Query:    92 RKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPN 151
             ++ ++G+L  LDI+A +A  + +          +K M  PVS ++   P+   L  + P 
Sbjct:    66 QQRFVGILNSLDIVAFLAKTECLQE--------EKAMKIPVSEVVS--PDNTLLKQVDPG 115

Query:   152 TSILDCMEVFSKGIHRALVP 171
             T ++D +E+  +G+ R LVP
Sbjct:   116 TRLIDALEMMKQGVRRLLVP 135

 Score = 65 (27.9 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query:   184 LVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIK 242
             +  S   +  L++ D++RF++     L  +   SI  LG +N+N   I  S   I+A +
Sbjct:   180 MTSSRDKFCCLSREDVIRFLIGVLGALAPLPLTSISTLGIINQNYNFIEASLPAIEATR 238


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.129   0.362    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      262       246    0.0010  113 3  11 22  0.45    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  172 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.63u 0.08s 20.71t   Elapsed:  00:00:02
  Total cpu time:  20.63u 0.08s 20.71t   Elapsed:  00:00:02
  Start:  Fri May 10 16:06:46 2013   End:  Fri May 10 16:06:48 2013

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