BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046022
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 134 SIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQM 193
+IIG P GLS + + + + +F KG+ + S +EN GV+ V S +
Sbjct: 5 AIIGGGPAGLSAGLYATRGGVKNAV-LFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQ 63
Query: 194 LTQMDLLRFMMNH 206
Q RF + H
Sbjct: 64 PWQEQCFRFGLKH 76
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 95 YIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSI---IGHCPEGLSLWTLSPN 151
+ G+LTM D + I Q + +A ++DK + + IG P + P
Sbjct: 68 FAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPP--ETIYVHPM 125
Query: 152 TSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELK 211
S++D SK R + +D E +G E++ S +LTQ +L+F+ + E
Sbjct: 126 HSLMDACLAMSKSRARRIPLIDVDGE--TGSEMIVS-----VLTQYRILKFISMNCKETA 178
Query: 212 DITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG 259
+ + N+ + TKV D IK + + AVPIV S G
Sbjct: 179 MLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEG 226
>pdb|1KOB|A Chain A, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
pdb|1KOB|B Chain B, Twitchin Kinase Fragment (Aplysia), Autoregulated Protein
Kinase Domain
Length = 387
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 176 MENISGVELVE--SASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITE 233
+E +SG EL + +A Y+M ++ +++ +M LK + HSI L EN+ T+
Sbjct: 127 LEFLSGGELFDRIAAEDYKM-SEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETK 185
Query: 234 STKVIDAIKCMRAALLHAVPIVKSSGAT 261
+ I A L+ IVK + AT
Sbjct: 186 KASSVKIIDFGLATKLNPDEIVKVTTAT 213
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 12/168 (7%)
Query: 95 YIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSI---IGHCPEGLSLWTLSPN 151
+ G+LTM D + I Q + +A ++DK + + IG P + P
Sbjct: 67 FAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPP--ETIYVHPM 124
Query: 152 TSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELK 211
S++D SK R + +D E +G E++ S +LTQ +L+F+ + E
Sbjct: 125 HSLMDACLAMSKSRARRIPLIDVDGE--TGSEMIVS-----VLTQYRILKFISMNCKETA 177
Query: 212 DITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG 259
+ + N+ + TKV D IK + + AVPIV S G
Sbjct: 178 MLRVPLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEG 225
>pdb|3TFY|A Chain A, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|B Chain B, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
pdb|3TFY|C Chain C, Naa50p Amino-Terminal Acetyltransferase Bound To Substrate
Peptide Fragment And Coa
Length = 169
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 209 ELKDITSHSIRELGALNENVFAITESTKV 237
EL D+T H+I++L LN+ +F ++ + K
Sbjct: 7 ELGDVTPHNIKQLKRLNQVIFPVSYNDKF 35
>pdb|2OB0|A Chain A, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|B Chain B, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2OB0|C Chain C, Human Mak3 Homolog In Complex With Acetyl-Coa
pdb|2PSW|A Chain A, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|B Chain B, Human Mak3 Homolog In Complex With Coa
pdb|2PSW|C Chain C, Human Mak3 Homolog In Complex With Coa
Length = 170
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 209 ELKDITSHSIRELGALNENVFAITESTKV 237
EL D+T H+I++L LN+ +F ++ + K
Sbjct: 8 ELGDVTPHNIKQLKRLNQVIFPVSYNDKF 36
>pdb|4DDQ|A Chain A, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|B Chain B, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|C Chain C, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|D Chain D, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|E Chain E, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|F Chain F, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
Length = 502
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 157 CMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSH 216
+E FS +A +D R++ ++G+E + YQ L ++ +ELKDI ++
Sbjct: 410 LIEQFSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSLVKL---------IAELKDILAN 460
Query: 217 SIRELGALNENVFAITE 233
+ L + E + I E
Sbjct: 461 EYKVLEIIREELTEIKE 477
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 193 MLTQMDLLRFMMNHASELKDITSHSIR-ELGALN----ENVFAITESTKVIDAIKCMRAA 247
+LTQ +L+F+ + E +H ++ +G LN +N+ + +T VID I+ +
Sbjct: 165 VLTQYRILKFVALNCRE-----THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQG 219
Query: 248 LLHAVPIVKSSG 259
+ +VPI+ +G
Sbjct: 220 RVSSVPIIDENG 231
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 10/72 (13%)
Query: 193 MLTQMDLLRFMMNHASELKDITSHSIR-ELGALN----ENVFAITESTKVIDAIKCMRAA 247
+LTQ +L+F+ + E +H ++ +G LN +N+ + +T VID I+ +
Sbjct: 158 VLTQYRILKFVALNCRE-----THFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQG 212
Query: 248 LLHAVPIVKSSG 259
+ +VPI+ +G
Sbjct: 213 RVSSVPIIDENG 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,576,323
Number of Sequences: 62578
Number of extensions: 231923
Number of successful extensions: 546
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 16
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)