Query 046022
Match_columns 262
No_of_seqs 162 out of 1486
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 08:00:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 99.8 4.6E-18 1E-22 159.3 16.5 215 12-260 50-271 (381)
2 COG2524 Predicted transcriptio 99.7 1.3E-17 2.8E-22 145.5 11.4 122 26-205 170-292 (294)
3 COG3448 CBS-domain-containing 99.7 5.6E-17 1.2E-21 144.0 12.2 139 19-207 236-375 (382)
4 COG3620 Predicted transcriptio 99.6 2.7E-14 5.9E-19 116.7 10.2 123 26-205 63-185 (187)
5 cd04618 CBS_pair_5 The CBS dom 99.5 1.3E-13 2.8E-18 104.8 11.7 96 39-202 2-98 (98)
6 TIGR03520 GldE gliding motilit 99.5 4.9E-13 1.1E-17 126.7 16.6 161 25-246 188-350 (408)
7 PRK15094 magnesium/cobalt effl 99.5 9.5E-13 2.1E-17 119.6 15.4 162 25-244 64-227 (292)
8 cd04641 CBS_pair_28 The CBS do 99.5 9.3E-13 2E-17 102.5 12.8 118 39-202 2-120 (120)
9 PRK10892 D-arabinose 5-phospha 99.5 5.8E-13 1.3E-17 122.3 12.2 123 26-202 200-323 (326)
10 cd04603 CBS_pair_KefB_assoc Th 99.4 1.6E-12 3.5E-17 100.1 11.7 109 39-202 2-111 (111)
11 PRK07807 inosine 5-monophospha 99.4 6E-12 1.3E-16 121.3 16.6 128 18-206 79-207 (479)
12 cd04608 CBS_pair_PALP_assoc Th 99.4 1.4E-12 3.1E-17 103.0 9.7 112 39-203 3-124 (124)
13 cd04632 CBS_pair_19 The CBS do 99.4 4.2E-12 9.1E-17 99.8 12.2 126 39-202 2-128 (128)
14 COG2524 Predicted transcriptio 99.4 1.4E-12 2.9E-17 114.3 9.7 106 128-260 170-276 (294)
15 PRK11543 gutQ D-arabinose 5-ph 99.4 3.7E-12 8E-17 116.6 12.6 122 27-202 196-318 (321)
16 cd04617 CBS_pair_4 The CBS dom 99.4 6.5E-12 1.4E-16 97.6 11.7 115 39-201 2-117 (118)
17 PRK01862 putative voltage-gate 99.4 5.4E-12 1.2E-16 124.4 13.3 132 22-206 441-573 (574)
18 COG2905 Predicted signal-trans 99.4 2.7E-12 5.8E-17 122.8 9.3 123 28-206 149-272 (610)
19 cd04619 CBS_pair_6 The CBS dom 99.4 1.9E-11 4.2E-16 94.3 12.6 111 39-201 2-113 (114)
20 cd04630 CBS_pair_17 The CBS do 99.3 2.9E-11 6.2E-16 93.1 12.5 111 39-201 2-113 (114)
21 cd04593 CBS_pair_EriC_assoc_ba 99.3 3.2E-11 7E-16 92.8 12.4 112 39-201 2-114 (115)
22 cd04623 CBS_pair_10 The CBS do 99.3 3.1E-11 6.7E-16 91.9 11.6 111 39-202 2-113 (113)
23 cd04643 CBS_pair_30 The CBS do 99.3 4.1E-11 8.9E-16 92.0 12.2 115 39-202 2-116 (116)
24 cd04801 CBS_pair_M50_like This 99.3 2.5E-11 5.4E-16 93.3 10.9 110 39-201 2-113 (114)
25 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 9.1E-11 2E-15 113.1 17.0 129 16-206 76-205 (475)
26 cd04642 CBS_pair_29 The CBS do 99.3 6.3E-11 1.4E-15 93.0 12.9 120 39-201 2-125 (126)
27 cd04629 CBS_pair_16 The CBS do 99.3 2.4E-11 5.2E-16 93.0 10.0 112 39-202 2-114 (114)
28 cd04607 CBS_pair_NTP_transfera 99.3 8.5E-11 1.8E-15 90.2 13.1 108 40-201 4-112 (113)
29 cd04600 CBS_pair_HPP_assoc Thi 99.3 7E-11 1.5E-15 91.9 12.7 120 38-201 2-123 (124)
30 PRK05567 inosine 5'-monophosph 99.3 1.2E-10 2.5E-15 112.9 16.9 167 22-257 80-248 (486)
31 cd04631 CBS_pair_18 The CBS do 99.3 6.4E-11 1.4E-15 92.2 12.2 123 39-202 2-125 (125)
32 PRK14869 putative manganese-de 99.3 1.1E-10 2.5E-15 114.3 16.5 193 28-260 68-289 (546)
33 cd04614 CBS_pair_1 The CBS dom 99.3 5.3E-11 1.2E-15 89.8 11.1 93 39-201 2-95 (96)
34 cd04636 CBS_pair_23 The CBS do 99.3 4.7E-11 1E-15 94.5 11.2 123 39-202 2-132 (132)
35 cd04639 CBS_pair_26 The CBS do 99.3 6.7E-11 1.5E-15 90.2 11.2 109 39-202 2-111 (111)
36 cd04589 CBS_pair_CAP-ED_DUF294 99.3 1E-10 2.2E-15 89.3 11.9 109 39-202 2-111 (111)
37 cd04621 CBS_pair_8 The CBS dom 99.2 1.1E-10 2.3E-15 93.7 11.9 122 39-201 2-134 (135)
38 PRK11573 hypothetical protein; 99.2 2.7E-10 5.8E-15 108.3 16.5 164 25-244 184-349 (413)
39 cd04627 CBS_pair_14 The CBS do 99.2 1.7E-10 3.7E-15 90.1 12.6 118 39-199 2-120 (123)
40 cd04586 CBS_pair_BON_assoc Thi 99.2 7.8E-11 1.7E-15 93.6 10.9 124 38-202 2-135 (135)
41 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 1.2E-10 2.7E-15 88.7 11.4 112 39-202 2-114 (114)
42 cd04803 CBS_pair_15 The CBS do 99.2 1.3E-10 2.8E-15 90.1 11.7 120 39-202 2-122 (122)
43 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 1.7E-10 3.7E-15 87.2 12.0 104 39-202 2-106 (106)
44 TIGR01137 cysta_beta cystathio 99.2 8.9E-11 1.9E-15 112.4 12.9 126 21-203 328-453 (454)
45 cd04626 CBS_pair_13 The CBS do 99.2 1.2E-10 2.5E-15 89.0 11.1 108 39-201 2-110 (111)
46 cd04590 CBS_pair_CorC_HlyC_ass 99.2 2.1E-10 4.6E-15 87.4 12.3 108 39-201 2-110 (111)
47 cd04624 CBS_pair_11 The CBS do 99.2 3.2E-10 6.9E-15 86.6 13.0 109 39-201 2-111 (112)
48 cd04605 CBS_pair_MET2_assoc Th 99.2 3.8E-10 8.3E-15 85.9 13.2 107 38-201 2-109 (110)
49 cd04625 CBS_pair_12 The CBS do 99.2 1.9E-10 4.2E-15 87.8 11.5 110 39-202 2-112 (112)
50 cd04595 CBS_pair_DHH_polyA_Pol 99.2 2.8E-10 6.1E-15 86.7 12.0 107 38-201 2-109 (110)
51 cd04588 CBS_pair_CAP-ED_DUF294 99.2 4.2E-10 9.1E-15 85.6 12.8 107 39-201 2-109 (110)
52 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 4.4E-10 9.5E-15 85.1 12.7 105 39-201 3-108 (109)
53 TIGR00400 mgtE Mg2+ transporte 99.2 7E-11 1.5E-15 113.4 10.2 156 26-254 129-290 (449)
54 cd04640 CBS_pair_27 The CBS do 99.2 2.1E-10 4.5E-15 90.2 11.1 114 39-201 2-125 (126)
55 cd04800 CBS_pair_CAP-ED_DUF294 99.2 4.1E-10 8.9E-15 85.8 11.9 108 39-201 2-110 (111)
56 PTZ00314 inosine-5'-monophosph 99.2 1.1E-09 2.4E-14 106.2 17.5 127 22-203 89-217 (495)
57 PRK07107 inosine 5-monophospha 99.2 2.9E-10 6.2E-15 110.3 13.3 123 29-203 95-219 (502)
58 cd04596 CBS_pair_DRTGG_assoc T 99.2 3.3E-10 7.2E-15 86.3 11.0 104 39-201 3-107 (108)
59 cd04620 CBS_pair_7 The CBS dom 99.2 6.6E-10 1.4E-14 85.3 12.7 109 39-201 2-114 (115)
60 cd04615 CBS_pair_2 The CBS dom 99.2 5.6E-10 1.2E-14 85.3 12.1 109 40-201 3-112 (113)
61 cd04802 CBS_pair_3 The CBS dom 99.2 8.2E-10 1.8E-14 84.3 12.7 109 39-201 2-111 (112)
62 cd04609 CBS_pair_PALP_assoc2 T 99.2 4.6E-10 1E-14 85.0 11.1 109 39-202 2-110 (110)
63 cd04635 CBS_pair_22 The CBS do 99.2 5.3E-10 1.2E-14 86.6 11.5 119 39-201 2-121 (122)
64 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 6.4E-10 1.4E-14 84.9 11.6 111 39-202 3-114 (114)
65 cd04611 CBS_pair_PAS_GGDEF_DUF 99.1 8.8E-10 1.9E-14 83.7 12.2 108 39-201 2-110 (111)
66 COG0517 FOG: CBS domain [Gener 99.1 8.5E-10 1.8E-14 84.6 12.2 109 38-200 7-117 (117)
67 cd04633 CBS_pair_20 The CBS do 99.1 4.9E-10 1.1E-14 86.7 10.9 119 39-202 2-121 (121)
68 cd04637 CBS_pair_24 The CBS do 99.1 8.4E-10 1.8E-14 85.6 12.0 120 39-202 2-122 (122)
69 cd04618 CBS_pair_5 The CBS dom 99.1 3.9E-10 8.5E-15 85.6 9.7 81 145-260 3-85 (98)
70 cd04602 CBS_pair_IMPDH_2 This 99.1 1.1E-09 2.4E-14 84.3 12.4 110 39-201 3-113 (114)
71 cd04612 CBS_pair_SpoIVFB_EriC_ 99.1 1E-09 2.2E-14 83.4 12.0 109 39-202 2-111 (111)
72 cd04627 CBS_pair_14 The CBS do 99.1 6.4E-10 1.4E-14 86.8 11.1 104 145-260 3-110 (123)
73 cd04599 CBS_pair_GGDEF_assoc2 99.1 7.4E-10 1.6E-14 83.4 10.7 102 39-201 2-104 (105)
74 PLN02274 inosine-5'-monophosph 99.1 2.9E-09 6.2E-14 103.5 17.3 115 38-205 108-223 (505)
75 cd04585 CBS_pair_ACT_assoc2 Th 99.1 1.5E-09 3.2E-14 83.5 12.5 119 39-202 2-122 (122)
76 cd04622 CBS_pair_9 The CBS dom 99.1 2E-09 4.4E-14 82.1 12.5 110 39-201 2-112 (113)
77 cd04587 CBS_pair_CAP-ED_DUF294 99.1 2.6E-09 5.6E-14 81.5 12.6 110 39-201 2-112 (113)
78 cd04594 CBS_pair_EriC_assoc_ar 99.1 1.7E-09 3.6E-14 82.0 11.2 99 41-201 4-103 (104)
79 TIGR01302 IMP_dehydrog inosine 99.1 3.9E-09 8.5E-14 101.4 15.9 120 29-204 81-201 (450)
80 cd04601 CBS_pair_IMPDH This cd 99.1 1.4E-09 3E-14 82.5 10.3 105 39-201 3-109 (110)
81 cd04606 CBS_pair_Mg_transporte 99.1 1.6E-09 3.6E-14 82.6 10.5 102 43-203 2-109 (109)
82 TIGR00393 kpsF KpsF/GutQ famil 99.1 1.1E-09 2.4E-14 97.5 11.0 103 27-171 154-257 (268)
83 cd04592 CBS_pair_EriC_assoc_eu 99.1 2.4E-09 5.2E-14 86.1 11.7 109 39-173 2-117 (133)
84 COG1253 TlyC Hemolysins and re 99.1 7.4E-09 1.6E-13 98.9 16.8 165 24-246 202-368 (429)
85 cd04591 CBS_pair_EriC_assoc_eu 99.0 2.6E-09 5.7E-14 81.7 10.9 102 39-202 3-105 (105)
86 cd04610 CBS_pair_ParBc_assoc T 99.0 3.2E-09 6.9E-14 80.2 11.2 105 38-202 2-107 (107)
87 cd02205 CBS_pair The CBS domai 99.0 5E-09 1.1E-13 78.5 12.1 111 39-202 2-113 (113)
88 cd04584 CBS_pair_ACT_assoc Thi 99.0 4.4E-09 9.6E-14 81.2 11.6 118 39-201 2-120 (121)
89 cd04592 CBS_pair_EriC_assoc_eu 99.0 2.7E-09 5.8E-14 85.8 10.5 104 145-261 3-121 (133)
90 COG3448 CBS-domain-containing 99.0 2E-09 4.4E-14 96.3 10.0 145 93-260 198-357 (382)
91 PF00571 CBS: CBS domain CBS d 99.0 1.2E-09 2.6E-14 74.4 6.2 56 30-109 1-56 (57)
92 cd04641 CBS_pair_28 The CBS do 99.0 6.6E-09 1.4E-13 80.6 11.2 100 145-260 3-107 (120)
93 cd04634 CBS_pair_21 The CBS do 99.0 8.1E-09 1.8E-13 83.2 11.7 121 39-201 2-142 (143)
94 COG4109 Predicted transcriptio 99.0 2.7E-09 5.9E-14 97.4 9.6 120 28-206 188-308 (432)
95 cd04619 CBS_pair_6 The CBS dom 99.0 1.4E-08 3E-13 78.3 11.6 98 145-260 3-101 (114)
96 KOG1764 5'-AMP-activated prote 98.9 2E-08 4.2E-13 94.5 14.6 181 37-260 161-344 (381)
97 cd04603 CBS_pair_KefB_assoc Th 98.9 9.8E-09 2.1E-13 78.8 10.4 95 145-260 3-98 (111)
98 PRK11543 gutQ D-arabinose 5-ph 98.9 9.8E-09 2.1E-13 94.0 11.5 114 124-260 191-305 (321)
99 cd04617 CBS_pair_4 The CBS dom 98.9 2.2E-08 4.8E-13 77.5 11.3 96 145-259 3-101 (118)
100 cd04638 CBS_pair_25 The CBS do 98.9 2.8E-08 6E-13 75.2 11.2 103 39-201 2-105 (106)
101 cd04630 CBS_pair_17 The CBS do 98.9 2.1E-08 4.5E-13 77.0 10.4 96 145-257 3-99 (114)
102 PRK10892 D-arabinose 5-phospha 98.9 1.3E-08 2.9E-13 93.4 10.9 107 129-257 201-308 (326)
103 cd04642 CBS_pair_29 The CBS do 98.9 2.4E-08 5.1E-13 78.3 10.4 102 145-260 3-113 (126)
104 cd04598 CBS_pair_GGDEF_assoc T 98.9 5E-08 1.1E-12 75.1 12.1 112 39-201 2-118 (119)
105 cd04600 CBS_pair_HPP_assoc Thi 98.9 2.9E-08 6.4E-13 77.0 10.8 101 145-260 4-111 (124)
106 cd04639 CBS_pair_26 The CBS do 98.8 3.8E-08 8.1E-13 74.9 10.7 95 145-260 3-98 (111)
107 cd04643 CBS_pair_30 The CBS do 98.8 3.3E-08 7.2E-13 75.6 10.4 99 145-260 3-103 (116)
108 cd04801 CBS_pair_M50_like This 98.8 4.8E-08 1E-12 74.9 11.2 95 145-260 3-101 (114)
109 cd04607 CBS_pair_NTP_transfera 98.8 5.5E-08 1.2E-12 74.4 11.5 95 146-260 5-100 (113)
110 cd04605 CBS_pair_MET2_assoc Th 98.8 8.8E-08 1.9E-12 72.7 11.7 93 145-260 4-97 (110)
111 cd04624 CBS_pair_11 The CBS do 98.8 1.1E-07 2.4E-12 72.4 11.9 96 145-260 3-99 (112)
112 cd04615 CBS_pair_2 The CBS dom 98.8 9.5E-08 2.1E-12 72.8 11.0 97 145-260 3-100 (113)
113 COG0517 FOG: CBS domain [Gener 98.8 9.2E-08 2E-12 73.1 10.7 94 145-259 9-104 (117)
114 TIGR00393 kpsF KpsF/GutQ famil 98.8 5.2E-08 1.1E-12 86.8 10.5 108 129-260 154-262 (268)
115 cd04588 CBS_pair_CAP-ED_DUF294 98.8 1.3E-07 2.9E-12 71.6 11.1 94 145-260 3-97 (110)
116 cd04803 CBS_pair_15 The CBS do 98.8 1.1E-07 2.4E-12 73.5 10.7 101 145-260 3-109 (122)
117 cd04631 CBS_pair_18 The CBS do 98.8 8.6E-08 1.9E-12 74.4 10.1 102 145-260 3-112 (125)
118 cd04626 CBS_pair_13 The CBS do 98.7 1.1E-07 2.4E-12 72.4 10.4 93 145-257 3-96 (111)
119 cd04623 CBS_pair_10 The CBS do 98.7 1.9E-07 4.1E-12 70.8 11.5 95 145-257 3-98 (113)
120 cd04621 CBS_pair_8 The CBS dom 98.7 1.3E-07 2.8E-12 75.7 11.0 98 145-257 3-120 (135)
121 cd04629 CBS_pair_16 The CBS do 98.7 8.5E-08 1.8E-12 73.1 9.5 96 145-257 3-99 (114)
122 cd04586 CBS_pair_BON_assoc Thi 98.7 8.2E-08 1.8E-12 76.1 9.4 100 145-260 4-122 (135)
123 cd04590 CBS_pair_CorC_HlyC_ass 98.7 1.8E-07 3.9E-12 71.1 10.9 95 145-260 3-98 (111)
124 cd04604 CBS_pair_KpsF_GutQ_ass 98.7 1.8E-07 4E-12 71.1 10.8 97 145-260 4-101 (114)
125 cd04636 CBS_pair_23 The CBS do 98.7 1.5E-07 3.2E-12 74.3 10.6 99 145-259 3-118 (132)
126 cd04611 CBS_pair_PAS_GGDEF_DUF 98.7 2E-07 4.2E-12 70.6 10.9 95 145-260 3-98 (111)
127 COG4536 CorB Putative Mg2+ and 98.7 2.1E-07 4.5E-12 85.9 12.8 144 11-206 181-326 (423)
128 cd04613 CBS_pair_SpoIVFB_EriC_ 98.7 1.6E-07 3.4E-12 71.3 10.3 96 145-259 3-100 (114)
129 cd04620 CBS_pair_7 The CBS dom 98.7 2.3E-07 5E-12 71.0 11.2 96 145-260 3-102 (115)
130 cd04587 CBS_pair_CAP-ED_DUF294 98.7 1.7E-07 3.6E-12 71.4 10.3 97 145-260 3-100 (113)
131 cd04582 CBS_pair_ABC_OpuCA_ass 98.7 1.6E-07 3.5E-12 70.8 10.1 90 145-260 3-93 (106)
132 TIGR03520 GldE gliding motilit 98.7 7.4E-08 1.6E-12 91.5 10.1 107 129-261 190-297 (408)
133 cd04596 CBS_pair_DRTGG_assoc T 98.7 1.6E-07 3.5E-12 71.3 10.1 91 145-260 4-95 (108)
134 cd04614 CBS_pair_1 The CBS dom 98.7 1.2E-07 2.6E-12 71.3 9.3 80 145-260 3-83 (96)
135 cd04635 CBS_pair_22 The CBS do 98.7 1.6E-07 3.4E-12 72.6 10.0 101 145-260 3-109 (122)
136 cd04593 CBS_pair_EriC_assoc_ba 98.7 2.4E-07 5.2E-12 71.0 10.9 95 145-258 3-98 (115)
137 PRK07107 inosine 5-monophospha 98.7 7.8E-08 1.7E-12 93.5 9.9 109 130-260 94-205 (502)
138 cd04637 CBS_pair_24 The CBS do 98.7 2.1E-07 4.6E-12 72.0 10.5 100 145-260 3-109 (122)
139 cd04583 CBS_pair_ABC_OpuCA_ass 98.7 3.1E-07 6.8E-12 69.3 11.1 92 145-260 4-96 (109)
140 cd04800 CBS_pair_CAP-ED_DUF294 98.7 2.2E-07 4.9E-12 70.5 10.1 93 145-257 3-96 (111)
141 cd02205 CBS_pair The CBS domai 98.7 4E-07 8.7E-12 67.9 11.0 97 145-260 3-100 (113)
142 cd04633 CBS_pair_20 The CBS do 98.7 1.9E-07 4.1E-12 72.0 9.3 97 145-257 3-106 (121)
143 cd04612 CBS_pair_SpoIVFB_EriC_ 98.6 3.7E-07 8.1E-12 69.1 10.6 95 145-260 3-98 (111)
144 cd04802 CBS_pair_3 The CBS dom 98.6 5.9E-07 1.3E-11 68.3 11.3 95 145-258 3-98 (112)
145 cd04585 CBS_pair_ACT_assoc2 Th 98.6 3.6E-07 7.9E-12 70.1 10.1 100 145-260 3-109 (122)
146 cd04632 CBS_pair_19 The CBS do 98.6 6.8E-07 1.5E-11 69.9 11.6 98 145-257 3-110 (128)
147 cd04595 CBS_pair_DHH_polyA_Pol 98.6 5.1E-07 1.1E-11 68.5 10.2 92 145-259 4-96 (110)
148 cd04625 CBS_pair_12 The CBS do 98.6 6.4E-07 1.4E-11 68.1 10.7 94 145-257 3-97 (112)
149 PRK01862 putative voltage-gate 98.6 2.5E-07 5.4E-12 91.5 10.6 107 129-259 446-553 (574)
150 PRK15094 magnesium/cobalt effl 98.6 2.5E-07 5.4E-12 84.2 9.7 108 129-260 66-174 (292)
151 cd04622 CBS_pair_9 The CBS dom 98.6 7.1E-07 1.5E-11 67.8 10.7 96 145-260 3-100 (113)
152 cd04584 CBS_pair_ACT_assoc Thi 98.5 9.8E-07 2.1E-11 67.9 10.6 98 145-257 3-106 (121)
153 cd04608 CBS_pair_PALP_assoc Th 98.5 3.1E-07 6.7E-12 72.3 7.8 97 145-260 4-110 (124)
154 cd04589 CBS_pair_CAP-ED_DUF294 98.5 1.4E-06 3.1E-11 66.1 10.9 93 145-257 3-96 (111)
155 COG2905 Predicted signal-trans 98.5 3.7E-07 7.9E-12 88.1 9.2 107 128-258 147-254 (610)
156 PRK07807 inosine 5-monophospha 98.5 7.8E-07 1.7E-11 86.1 10.8 102 129-260 88-190 (479)
157 cd04609 CBS_pair_PALP_assoc2 T 98.5 1E-06 2.3E-11 66.4 9.4 94 145-260 3-97 (110)
158 COG4535 CorC Putative Mg2+ and 98.5 6.8E-07 1.5E-11 78.0 9.0 155 24-237 63-220 (293)
159 cd04640 CBS_pair_27 The CBS do 98.5 6.6E-07 1.4E-11 70.1 8.1 96 145-258 3-110 (126)
160 cd04599 CBS_pair_GGDEF_assoc2 98.5 1.6E-06 3.5E-11 65.0 9.4 87 145-257 3-90 (105)
161 cd04634 CBS_pair_21 The CBS do 98.4 2.6E-06 5.6E-11 68.5 10.6 97 145-257 3-128 (143)
162 COG3620 Predicted transcriptio 98.4 1.2E-06 2.6E-11 72.1 8.5 103 130-259 65-168 (187)
163 cd04606 CBS_pair_Mg_transporte 98.4 1.8E-06 3.9E-11 65.5 9.1 88 148-260 2-95 (109)
164 cd04610 CBS_pair_ParBc_assoc T 98.4 2.2E-06 4.7E-11 64.5 9.4 90 145-260 4-94 (107)
165 cd04602 CBS_pair_IMPDH_2 This 98.4 3E-06 6.6E-11 64.9 10.1 95 145-260 4-101 (114)
166 TIGR01303 IMP_DH_rel_1 IMP deh 98.4 1.7E-06 3.6E-11 83.7 10.1 101 129-260 87-188 (475)
167 PLN02274 inosine-5'-monophosph 98.4 2.3E-06 5E-11 83.4 10.5 95 145-260 110-207 (505)
168 PF00571 CBS: CBS domain CBS d 98.4 1.2E-06 2.5E-11 59.4 6.1 56 132-205 1-57 (57)
169 PTZ00314 inosine-5'-monophosph 98.3 2.9E-06 6.3E-11 82.6 10.4 95 145-260 106-203 (495)
170 cd04601 CBS_pair_IMPDH This cd 98.3 4E-06 8.6E-11 63.2 9.1 92 145-260 4-97 (110)
171 cd04598 CBS_pair_GGDEF_assoc T 98.3 3.8E-06 8.2E-11 64.5 9.0 99 145-260 3-106 (119)
172 cd04591 CBS_pair_EriC_assoc_eu 98.3 6.2E-06 1.3E-10 62.8 9.8 85 145-256 4-89 (105)
173 TIGR00400 mgtE Mg2+ transporte 98.3 3.3E-06 7.2E-11 81.2 9.9 102 129-260 130-237 (449)
174 TIGR01302 IMP_dehydrog inosine 98.3 3.6E-06 7.8E-11 81.0 10.0 95 145-260 90-186 (450)
175 cd04594 CBS_pair_EriC_assoc_ar 98.3 5.2E-06 1.1E-10 62.6 8.9 85 146-257 4-89 (104)
176 PRK05567 inosine 5'-monophosph 98.3 5.6E-06 1.2E-10 80.4 10.2 101 131-260 88-190 (486)
177 TIGR01137 cysta_beta cystathio 98.2 1E-05 2.2E-10 77.6 10.6 104 129-259 334-438 (454)
178 COG2239 MgtE Mg/Co/Ni transpor 98.2 1E-05 2.2E-10 77.6 10.4 136 11-207 113-256 (451)
179 cd04638 CBS_pair_25 The CBS do 98.2 3.2E-05 7E-10 58.2 10.6 88 145-257 3-91 (106)
180 PRK11573 hypothetical protein; 98.2 1.6E-05 3.5E-10 75.7 10.8 111 129-261 186-297 (413)
181 KOG0474 Cl- channel CLC-7 and 98.1 7.3E-06 1.6E-10 80.0 7.5 144 23-203 577-746 (762)
182 cd04597 CBS_pair_DRTGG_assoc2 98.1 6.2E-06 1.4E-10 63.9 5.7 55 28-106 58-112 (113)
183 PRK10070 glycine betaine trans 98.1 7.6E-05 1.7E-09 70.9 13.7 121 28-206 274-395 (400)
184 PRK14869 putative manganese-de 98.0 6.6E-06 1.4E-10 80.9 4.4 72 16-110 234-305 (546)
185 COG1253 TlyC Hemolysins and re 97.9 6.8E-05 1.5E-09 71.8 10.8 109 129-261 205-314 (429)
186 TIGR01186 proV glycine betaine 97.8 0.00033 7.3E-09 65.7 13.0 108 41-206 253-360 (363)
187 smart00116 CBS Domain in cysta 97.8 8.5E-05 1.9E-09 46.7 6.2 47 40-108 2-48 (49)
188 KOG2550 IMP dehydrogenase/GMP 97.8 5.7E-05 1.2E-09 70.7 6.9 108 39-201 117-225 (503)
189 KOG0475 Cl- channel CLC-3 and 97.6 0.00055 1.2E-08 67.2 10.4 128 37-203 555-694 (696)
190 COG4109 Predicted transcriptio 97.4 0.00044 9.5E-09 63.8 7.6 102 130-259 188-290 (432)
191 TIGR01186 proV glycine betaine 97.0 0.0062 1.3E-07 57.2 10.7 90 146-260 253-343 (363)
192 COG2239 MgtE Mg/Co/Ni transpor 97.0 0.00095 2.1E-08 64.2 5.2 60 27-110 195-254 (451)
193 COG4536 CorB Putative Mg2+ and 96.8 0.0041 9E-08 58.0 7.7 111 129-261 199-310 (423)
194 KOG2550 IMP dehydrogenase/GMP 96.8 0.002 4.4E-08 60.5 5.5 95 146-261 119-214 (503)
195 PRK10070 glycine betaine trans 96.8 0.012 2.5E-07 56.1 10.4 89 147-260 289-378 (400)
196 COG4535 CorC Putative Mg2+ and 96.6 0.0053 1.2E-07 54.0 5.9 108 129-260 66-174 (293)
197 cd04597 CBS_pair_DRTGG_assoc2 96.5 0.0063 1.4E-07 46.9 5.4 58 201-260 39-100 (113)
198 smart00116 CBS Domain in cysta 96.1 0.022 4.7E-07 35.2 5.4 46 145-203 2-48 (49)
199 KOG0474 Cl- channel CLC-7 and 91.0 0.71 1.5E-05 46.1 7.0 118 129-259 581-731 (762)
200 TIGR03415 ABC_choXWV_ATP choli 88.1 2 4.2E-05 40.8 7.5 47 145-205 335-381 (382)
201 TIGR03415 ABC_choXWV_ATP choli 87.2 1.3 2.9E-05 41.9 5.8 48 39-110 334-381 (382)
202 COG4175 ProV ABC-type proline/ 87.1 1.8 3.8E-05 40.3 6.2 124 15-205 255-384 (386)
203 KOG2118 Predicted membrane pro 83.5 1.9 4.1E-05 42.3 5.1 112 23-173 199-311 (498)
204 COG1125 OpuBA ABC-type proline 81.6 2.9 6.3E-05 37.8 5.0 43 43-107 266-308 (309)
205 KOG0476 Cl- channel CLC-2 and 77.8 3.7 7.9E-05 42.1 4.9 65 24-110 584-648 (931)
206 COG1125 OpuBA ABC-type proline 70.7 56 0.0012 29.8 10.1 138 7-202 160-308 (309)
207 KOG0475 Cl- channel CLC-3 and 68.9 28 0.00062 35.1 8.5 102 145-257 558-678 (696)
208 COG4175 ProV ABC-type proline/ 64.7 14 0.00031 34.4 5.3 50 38-110 335-384 (386)
209 KOG0476 Cl- channel CLC-2 and 46.1 31 0.00066 35.7 4.5 64 129-208 587-651 (931)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.78 E-value=4.6e-18 Score=159.26 Aligned_cols=215 Identities=26% Similarity=0.379 Sum_probs=167.7
Q ss_pred ccCCcchHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCc
Q 046022 12 SAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAV 91 (262)
Q Consensus 12 ~~~~~~~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~ 91 (262)
.+-+.+...+.+|+..+++.+++.....++.++...++.+|+.+|..+...++|+|+...
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~-------------------- 109 (381)
T KOG1764|consen 50 TAESNAVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKK-------------------- 109 (381)
T ss_pred ccccchhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCcc--------------------
Confidence 345566677789999999999998888999999999999999999999999999999763
Q ss_pred CCeEEEEEeHHHHHHHHhCCCC--CCCCCCC-cchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCe
Q 046022 92 RKHYIGMLTMLDILAHIAGDDQ--MNGSDDA-PDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHR 167 (262)
Q Consensus 92 ~~~~vGivs~~Dil~~l~~~~~--l~~~~~~-~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~r 167 (262)
++++|++++.|++.++..... ....+.. ..+..-...+++..+....... ++..+.|..+++++...+. .++||
T Consensus 110 -~~~~g~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~p~~s~l~~~~~l~~~~~~r 187 (381)
T KOG1764|consen 110 -QQFVGMLTITDFITVLLRYYKSKSSLDNIEVLEDSQLSKRREVECLLKETLKP-PFVSISPESSLLDAVLLLIKSRIHR 187 (381)
T ss_pred -ceeEEEEEHHHHHHHHHHhhccCCcHHHHhhhhhhhccccchhhhhhccccCC-CceeecCcHHHHHHHHHHHhCCccc
Confidence 789999999999998886321 1000000 0010001123333333322222 2488999999999999777 79999
Q ss_pred eEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccc--hhhhccccchhcccCc-CeEEEeCCCcHHHHHHHH
Q 046022 168 ALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASEL--KDITSHSIRELGALNE-NVFAITESTKVIDAIKCM 244 (262)
Q Consensus 168 v~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l--~~l~~~ti~eL~~~~~-~v~tv~~~~~~~~A~~lM 244 (262)
+||. |.+. +.+.+++||..|++|++.+.+.+ ..+..+++.+|+++.- ++.++.+++++++|+++|
T Consensus 188 vpv~-d~~~-----------~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~~~~~v~~al~~m 255 (381)
T KOG1764|consen 188 VPVI-DPET-----------GEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASISEDTPVIEALKIM 255 (381)
T ss_pred eeee-cccc-----------cceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeecCCCcHHHHHHHH
Confidence 9994 4322 34569999999999999987665 5788999999999885 499999999999999999
Q ss_pred HhCCCcEEEEEcCCCC
Q 046022 245 RAALLHAVPIVKSSGA 260 (262)
Q Consensus 245 ~~~~isav~VVd~~g~ 260 (262)
..++++++||||.+|.
T Consensus 256 ~~~~is~lpvV~~~g~ 271 (381)
T KOG1764|consen 256 SERRISALPVVDENGK 271 (381)
T ss_pred HhcCcCcceEEcCCCc
Confidence 9999999999999885
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.74 E-value=1.3e-17 Score=145.49 Aligned_cols=122 Identities=22% Similarity=0.422 Sum_probs=104.7
Q ss_pred hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022 26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL 105 (262)
Q Consensus 26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil 105 (262)
-..+|.++| +++++++.+++|+.+|.+.|.+++|.++||+|. ++++||++..||.
T Consensus 170 Pk~~V~~~~--s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-----------------------dk~vGiit~~dI~ 224 (294)
T COG2524 170 PKEKVKNLM--SKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-----------------------DKIVGIITLSDIA 224 (294)
T ss_pred Ccchhhhhc--cCCceEecCCccHHHHHHHHHHcCccCCceecC-----------------------CceEEEEEHHHHH
Confidence 345789998 468999999999999999999999999999985 4899999999999
Q ss_pred HHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccccccee
Q 046022 106 AHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVEL 184 (262)
Q Consensus 106 ~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~ 184 (262)
..+.+. .++.+|+++|.. + ++++..|+.+.||+++|. +++.|+.|. +.+
T Consensus 225 ~aia~g---------------~~~~kV~~~M~k---~--vitI~eDe~i~dAir~M~~~nVGRLlV~-ds~--------- 274 (294)
T COG2524 225 KAIANG---------------NLDAKVSDYMRK---N--VITINEDEDIYDAIRLMNKNNVGRLLVT-DSN--------- 274 (294)
T ss_pred HHHHcC---------------CccccHHHHhcc---C--CceEcCchhHHHHHHHHHhcCcceEEEE-ccC---------
Confidence 998863 124589999973 4 799999999999999999 799999996 322
Q ss_pred cccCCeeeEecHHHHHHHHHh
Q 046022 185 VESASSYQMLTQMDLLRFMMN 205 (262)
Q Consensus 185 ~~~~~~~giITqsDIir~L~~ 205 (262)
|+++||||++||++.|+.
T Consensus 275 ---gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 275 ---GKPVGIITRTDILTRIAG 292 (294)
T ss_pred ---CcEEEEEehHHHHHHhhc
Confidence 456799999999998764
No 3
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.72 E-value=5.6e-17 Score=144.02 Aligned_cols=139 Identities=22% Similarity=0.376 Sum_probs=111.8
Q ss_pred HHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEE
Q 046022 19 DENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGM 98 (262)
Q Consensus 19 ~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGi 98 (262)
..+++...+.++.||| ++.+++++.++|+.+|.++|.+|++..+||+|+. .+++|+
T Consensus 236 qa~~R~~~~LtcadIM--SrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~----------------------~rl~Gi 291 (382)
T COG3448 236 QALRRRMGELTCADIM--SRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEH----------------------RRLVGI 291 (382)
T ss_pred HHHHHHhccccHHHhc--CccceecCCcCChHHHHHHHHHcCcccccccccc----------------------cceeee
Confidence 3446777899999999 5799999999999999999999999999999975 589999
Q ss_pred EeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCc
Q 046022 99 LTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRME 177 (262)
Q Consensus 99 vs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~ 177 (262)
|+.+|+++..... .+ ..+......+|+.+|+ ++ +.++.|+++..+++.+|. .|.|.+||. |..
T Consensus 292 Vt~~dl~~~a~~~-p~-------qrlr~~~~~~vk~imt-~~----v~tv~pdtpa~~lvp~lad~g~H~lpvl-d~~-- 355 (382)
T COG3448 292 VTQRDLLKHARPS-PF-------QRLRFLRPPTVKGIMT-TP----VVTVRPDTPAVELVPRLADEGLHALPVL-DAA-- 355 (382)
T ss_pred eeHHHHhhccCcc-hH-------HHhhccCCCccccccc-Cc----ceeecCCCcHHHHHHHhhcCCcceeeEE-cCC--
Confidence 9999988855431 11 0111112457999998 32 789999999999999998 799999995 533
Q ss_pred ccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 178 NISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 178 ~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
|+.+|||||+|++-.++.+.
T Consensus 356 ----------g~lvGIvsQtDliaal~r~~ 375 (382)
T COG3448 356 ----------GKLVGIVSQTDLIAALYRNW 375 (382)
T ss_pred ----------CcEEEEeeHHHHHHHHHHHH
Confidence 34569999999999988753
No 4
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.55 E-value=2.7e-14 Score=116.68 Aligned_cols=123 Identities=17% Similarity=0.285 Sum_probs=98.5
Q ss_pred hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022 26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL 105 (262)
Q Consensus 26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil 105 (262)
...++..||. +|++++++++++.+|+++|.+++++.+||+++ ++++|-||..||+
T Consensus 63 ~~ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-----------------------~k~VGsItE~~iv 117 (187)
T COG3620 63 TRITAKTIMH--SPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-----------------------DKVVGSITENDIV 117 (187)
T ss_pred ceEeHhhhcc--CCeeEECchhhHHHHHHHHHHcCCccCceeeC-----------------------CeeeeeecHHHHH
Confidence 3467999995 59999999999999999999999999999986 4899999999999
Q ss_pred HHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceec
Q 046022 106 AHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELV 185 (262)
Q Consensus 106 ~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~ 185 (262)
+.+++.. +..-...|+++|+. + |.+|+++++|..+-.++. ....+.|..+
T Consensus 118 ~~~le~~------------e~i~~~~vr~vM~e----~-fP~Vs~~~~l~vI~~LL~-~~~AVlV~e~------------ 167 (187)
T COG3620 118 RALLEGM------------ESIRSLRVREVMGE----P-FPTVSPDESLNVISQLLE-EHPAVLVVEN------------ 167 (187)
T ss_pred HHHhccc------------cchhhhhHHHHhcC----C-CCcCCCCCCHHHHHHHHh-hCCeEEEEeC------------
Confidence 9998741 11224479999982 2 688999999977766654 4456777522
Q ss_pred ccCCeeeEecHHHHHHHHHh
Q 046022 186 ESASSYQMLTQMDLLRFMMN 205 (262)
Q Consensus 186 ~~~~~~giITqsDIir~L~~ 205 (262)
|+.+||||+.||++++..
T Consensus 168 --G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 168 --GKVVGIITKADIMKLLAG 185 (187)
T ss_pred --CceEEEEeHHHHHHHHhc
Confidence 344699999999999865
No 5
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.53 E-value=1.3e-13 Score=104.84 Aligned_cols=96 Identities=26% Similarity=0.442 Sum_probs=79.7
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
.++++++++|+.+|++.|.++++.++||+++++ ++++|++|..|+++.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~---------------------~~~~Givt~~Dl~~~~~--------- 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRK---------------------QQFVGMLTITDFILILR--------- 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCC---------------------CEEEEEEEHHHHhhhee---------
Confidence 578999999999999999999999999998642 58999999999764210
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
+.++.|+++|.+|+++|. ++++++||+.++ . ++.+|+||++
T Consensus 52 --------------------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~-----------~~~~giit~~ 93 (98)
T cd04618 52 --------------------------LVSIHPERSLFDAALLLLKNKIHRLPVIDPS-T-----------GTGLYILTSR 93 (98)
T ss_pred --------------------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECC-C-----------CCceEEeehh
Confidence 257999999999999998 799999996332 1 2345999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
||+++
T Consensus 94 d~~~~ 98 (98)
T cd04618 94 RILKF 98 (98)
T ss_pred hhhcC
Confidence 99874
No 6
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.51 E-value=4.9e-13 Score=126.74 Aligned_cols=161 Identities=17% Similarity=0.289 Sum_probs=122.9
Q ss_pred hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022 25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI 104 (262)
Q Consensus 25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di 104 (262)
|.+++|+|+|++..++++++.++|+.++++.+.+++++++||++++ .++++|+|+..|+
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~---------------------~d~ivGiv~~kDl 246 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET---------------------IDNITGVLYIKDL 246 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC---------------------CCceEEEEEHHHH
Confidence 4678999999877789999999999999999999999999999854 2589999999999
Q ss_pred HHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccce
Q 046022 105 LAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVE 183 (262)
Q Consensus 105 l~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~ 183 (262)
+.++.. . ..++.++|. . +..+.+++++.++++.|. ++.|.++|+ |+.
T Consensus 247 l~~~~~-~----------------~~~l~~~~~----~--~~~Vpe~~~l~~ll~~m~~~~~~~aiVv-DE~-------- 294 (408)
T TIGR03520 247 LPHLNK-K----------------NFDWQSLLR----E--PYFVPENKKLDDLLRDFQEKKNHLAIVV-DEY-------- 294 (408)
T ss_pred HhHhcc-C----------------CCCHHHHcC----C--CeEeCCCCcHHHHHHHHHhcCceEEEEE-cCC--------
Confidence 876432 1 114667775 2 478999999999999999 677888885 432
Q ss_pred ecccCCeeeEecHHHHHHHHHhhc-ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHh
Q 046022 184 LVESASSYQMLTQMDLLRFMMNHA-SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRA 246 (262)
Q Consensus 184 ~~~~~~~~giITqsDIir~L~~~~-~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~ 246 (262)
|...||||.+||++.+...+ ++... ....+.. .+.....++.+.++.+..+.|.-
T Consensus 295 ----G~~~GiVT~eDileeivgei~de~d~-~~~~i~~---~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 295 ----GGTSGLVTLEDIIEEIVGDISDEFDD-EDLIYSK---IDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred ----CCEEEEEEHHHHHHHHhCCCCCcCCc-CccceEE---eCCCeEEEEeccCHHHHHHHhCC
Confidence 23459999999999987654 22211 1112222 23557888999999999998843
No 7
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.48 E-value=9.5e-13 Score=119.61 Aligned_cols=162 Identities=15% Similarity=0.324 Sum_probs=120.8
Q ss_pred hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022 25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI 104 (262)
Q Consensus 25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di 104 (262)
|.+.+|+|+|+...++++++.++|+.++++.+.+++.+.+||++.+. ++++|+|+..|+
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~---------------------d~iiGiv~~kDl 122 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK---------------------DHIEGILMAKDL 122 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCC---------------------CcEEEEEEHHHH
Confidence 35669999997655899999999999999999999999999998642 589999999999
Q ss_pred HHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccce
Q 046022 105 LAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVE 183 (262)
Q Consensus 105 l~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~ 183 (262)
+.++..... ..++.++|.. .+++.+++++.++++.|. ++.|.+||+ ++.
T Consensus 123 l~~~~~~~~---------------~~~l~~l~r~------~~~V~e~~~l~~~L~~m~~~~~~~a~Vv-De~-------- 172 (292)
T PRK15094 123 LPFMRSDAE---------------AFSMDKVLRQ------AVVVPESKRVDRMLKEFRSQRYHMAIVI-DEF-------- 172 (292)
T ss_pred HhHhhccCC---------------cCCHHHHcCC------CcCcCCCCcHHHHHHHHHhcCCEEEEEE-eCC--------
Confidence 876532110 1236777751 357999999999999998 688889986 422
Q ss_pred ecccCCeeeEecHHHHHHHHHhhc-ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHH
Q 046022 184 LVESASSYQMLTQMDLLRFMMNHA-SELKDITSHSIRELGALNENVFAITESTKVIDAIKCM 244 (262)
Q Consensus 184 ~~~~~~~~giITqsDIir~L~~~~-~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM 244 (262)
|...||||.+||++.+...+ ++........+.. ....-+.|+..+++.+..+.+
T Consensus 173 ----G~viGiVTleDIle~ivGei~de~d~~~~~~i~~---~~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 173 ----GGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQ---LSRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred ----CCEEEEeEHHHHHHHHhCCCccccccccccccEE---eCCCeEEEEeccCHHHHHHHh
Confidence 23469999999999998765 2222111112333 234568899999988888776
No 8
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=9.3e-13 Score=102.53 Aligned_cols=118 Identities=19% Similarity=0.312 Sum_probs=85.7
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.++++.++||++.+ ++++|+++..|++.++.... ..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~----------------------~~~~Giv~~~dl~~~~~~~~-~~--- 55 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN----------------------GKVVDVYSRFDVINLAKEGA-YN--- 55 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC----------------------CeEEEEEeHHHHHHHHhcCc-cc---
Confidence 57899999999999999999999999999864 68999999999997654321 10
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
.........+ ....+|. .+ +.++.+++++.++++.|. ++++++||+ +++ +..+|+||++
T Consensus 56 ~~~~~~~~~~--~~~~~~~---~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vv-d~~------------~~~~Givt~~ 115 (120)
T cd04641 56 NLDLTVGEAL--ERRSQDF---EG--VRTCSPDDCLRTIFDLIVKARVHRLVVV-DEN------------KRVEGIISLS 115 (120)
T ss_pred cccCCHHHHH--hhcccCC---CC--CeEEcCCCcHHHHHHHHHhcCccEEEEE-CCC------------CCEEEEEEHH
Confidence 0000111100 1122332 12 578999999999999998 799999996 322 2345999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
|+++|
T Consensus 116 di~~~ 120 (120)
T cd04641 116 DILQF 120 (120)
T ss_pred HhhcC
Confidence 99876
No 9
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.46 E-value=5.8e-13 Score=122.29 Aligned_cols=123 Identities=20% Similarity=0.229 Sum_probs=97.8
Q ss_pred hcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHH
Q 046022 26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDIL 105 (262)
Q Consensus 26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil 105 (262)
..++|+|+|...++++++++++|+.+|++.|.++++..+||++++ ++++|+|+..|+.
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~----------------------g~lvGivt~~Dl~ 257 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN----------------------MKIEGIFTDGDLR 257 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC----------------------CcEEEEEecHHHH
Confidence 566799999643378899999999999999999998888888764 6899999999987
Q ss_pred HHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccccccee
Q 046022 106 AHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVEL 184 (262)
Q Consensus 106 ~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~ 184 (262)
+.+..... ....+|.++|.. + +.++.+++++.+|++.|. ++++++||+ +++
T Consensus 258 ~~~~~~~~-------------~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-~~~--------- 309 (326)
T PRK10892 258 RVFDMGID-------------LRQASIADVMTP---G--GIRVRPGILAVDALNLMQSRHITSVLVA-DGD--------- 309 (326)
T ss_pred HHHhcCCC-------------cccCCHHHhcCC---C--CEEECCCCCHHHHHHHHHHCCCcEEEEe-eCC---------
Confidence 65442111 113479999972 3 588999999999999998 799999996 321
Q ss_pred cccCCeeeEecHHHHHHH
Q 046022 185 VESASSYQMLTQMDLLRF 202 (262)
Q Consensus 185 ~~~~~~~giITqsDIir~ 202 (262)
+++||||++||+++
T Consensus 310 ----~lvGiit~~dil~~ 323 (326)
T PRK10892 310 ----HLLGVLHMHDLLRA 323 (326)
T ss_pred ----EEEEEEEhHHhHhc
Confidence 23599999999984
No 10
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=1.6e-12 Score=100.06 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=86.5
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.+++...+||++++ ++++|+++..|+... ...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~dl~~~-~~~------- 51 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE----------------------NKVLGQVTLSDLLEI-GPN------- 51 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC----------------------CCEEEEEEHHHHHhh-ccc-------
Confidence 35789999999999999999999999999864 689999999998763 211
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
.....++.++|.. . +.++.+++++.+|+++|. ++.+++||+ +++ +..+|+||++
T Consensus 52 -------~~~~~~v~~~~~~---~--~~~v~~~~~l~~al~~m~~~~~~~lpVv-d~~------------~~~~Giit~~ 106 (111)
T cd04603 52 -------DYETLKVCEVYIV---P--VPIVYCDSKVTDLLRIFRETEPPVVAVV-DKE------------GKLVGTIYER 106 (111)
T ss_pred -------cccccChhheeec---C--CcEECCCCcHHHHHHHHHHcCCCeEEEE-cCC------------CeEEEEEEhH
Confidence 0112468888862 2 467999999999999998 788999996 432 2345999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
||++|
T Consensus 107 di~~~ 111 (111)
T cd04603 107 ELLRF 111 (111)
T ss_pred HhhcC
Confidence 99875
No 11
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.42 E-value=6e-12 Score=121.30 Aligned_cols=128 Identities=20% Similarity=0.207 Sum_probs=103.8
Q ss_pred hHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEE
Q 046022 18 ADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIG 97 (262)
Q Consensus 18 ~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vG 97 (262)
...+.+.+...+++++|. ++++++++++|+.+|++.|.++++.++||+|++ ++++|
T Consensus 79 ~~~q~~~l~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~----------------------gklvG 134 (479)
T PRK07807 79 IDVVAEVVAWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE----------------------GRPVG 134 (479)
T ss_pred HHHHHHHHhhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCC----------------------CeEEE
Confidence 344567888899999995 466799999999999999999999999999864 68999
Q ss_pred EEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCC
Q 046022 98 MLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRM 176 (262)
Q Consensus 98 ivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~ 176 (262)
+|+..|+.. . . ...+++++|+. + +.++.+++++.+|+++|. ++++++||+ +++
T Consensus 135 IVT~rDL~~-~-~-----------------~~~~V~diMt~---~--~itV~~d~sL~eAl~lM~~~~i~~LPVV-D~~- 188 (479)
T PRK07807 135 VVTEADCAG-V-D-----------------RFTQVRDVMST---D--LVTLPAGTDPREAFDLLEAARVKLAPVV-DAD- 188 (479)
T ss_pred EEeHHHHhc-C-c-----------------cCCCHHHhccC---C--ceEECCCCcHHHHHHHHHhcCCCEEEEE-cCC-
Confidence 999999731 1 0 01468999972 3 689999999999999988 799999996 422
Q ss_pred cccccceecccCCeeeEecHHHHHHHHHhh
Q 046022 177 ENISGVELVESASSYQMLTQMDLLRFMMNH 206 (262)
Q Consensus 177 ~~~~g~~~~~~~~~~giITqsDIir~L~~~ 206 (262)
++.+|+||++||+++....
T Consensus 189 -----------g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 189 -----------GRLVGVLTRTGALRATIYT 207 (479)
T ss_pred -----------CeEEEEEEHHHHHHHhhCC
Confidence 2345999999999987654
No 12
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.41 E-value=1.4e-12 Score=103.02 Aligned_cols=112 Identities=19% Similarity=0.288 Sum_probs=87.7
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++++++++.|+.+|++.|.++++..+||++++ ++++|+++..|++..+.+...
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~----------------------~~~~Gii~~~dl~~~~~~~~~----- 55 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES----------------------GKILGMVTLGNLLSSLSSGKV----- 55 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----------------------CCEEEEEEHHHHHHHHHHhcc-----
Confidence 56789999999999999999999999999864 589999999999987664210
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh----------cCCCeeEeecCCCCcccccceecccC
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS----------KGIHRALVPMDSRMENISGVELVESA 188 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~----------~g~~rv~V~~~~~~~~~~g~~~~~~~ 188 (262)
....+|+++|.. + +.++.+++++.+++++|. .+.+++||+ ++ ++
T Consensus 56 --------~~~~~v~~im~~---~--~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~-~~------------~~ 109 (124)
T cd04608 56 --------QPSDPVSKALYK---Q--FKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGK-EK------------QE 109 (124)
T ss_pred --------CCCCcHHHHhhc---c--ceecCCCCCHHHHHhhcccCCceEEEecccccccccc-cc------------cc
Confidence 124589999973 3 578999999999999653 244555553 32 23
Q ss_pred CeeeEecHHHHHHHH
Q 046022 189 SSYQMLTQMDLLRFM 203 (262)
Q Consensus 189 ~~~giITqsDIir~L 203 (262)
+.+||||..||++|+
T Consensus 110 ~~~Givt~~Dl~~~~ 124 (124)
T cd04608 110 KPIGIVTKIDLLSYI 124 (124)
T ss_pred ceEEEEehhHhhhhC
Confidence 456999999999985
No 13
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=4.2e-12 Score=99.79 Aligned_cols=126 Identities=21% Similarity=0.334 Sum_probs=90.5
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++.+++++|+.+|++.|.++++..+||++++ ++++|+++..|+...+..........
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~----------------------~~~~G~it~~dl~~~~~~~~~~~~~~ 59 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN----------------------GKLTGIVTRHDIVDFVVRDRDKARTG 59 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC----------------------CcEEEEEEHHHHHHHHhhhhhhcchh
Confidence 45688999999999999999999999999875 58999999999987654321000000
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
............++.++|.. + +.++.+++++.++++.|. ++.+.+||..+++ +++.+|+||++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~-----------~~~~~Gvit~~ 123 (128)
T cd04632 60 DRSGEKERMLDLPVYDAMSS---P--VITASPNDSVRDAVDRMLENDDSSVVVVTPDD-----------DTKVVGILTKK 123 (128)
T ss_pred hhhhhhhhhccCcHHHHhcC---C--CceECCCCcHHHHHHHHHhCCCCeEeEeccCC-----------CCcEEEEEEhH
Confidence 00001112334578888862 2 578999999999999888 6788888853212 13456999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
||++|
T Consensus 124 di~~~ 128 (128)
T cd04632 124 DVLRA 128 (128)
T ss_pred hhhcC
Confidence 99874
No 14
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.40 E-value=1.4e-12 Score=114.27 Aligned_cols=106 Identities=24% Similarity=0.387 Sum_probs=92.6
Q ss_pred hccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022 128 MSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH 206 (262)
Q Consensus 128 ~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~ 206 (262)
.+.+|.++|+. . ++++.+++||.+|..+|. +|+|..||+.++ ++ +||||-+||...+++.
T Consensus 170 Pk~~V~~~~s~---~--~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d---k~-----------vGiit~~dI~~aia~g 230 (294)
T COG2524 170 PKEKVKNLMSK---K--LITVRPDDTLREAAKLFYEKGIRGAPVVDDD---KI-----------VGIITLSDIAKAIANG 230 (294)
T ss_pred CcchhhhhccC---C--ceEecCCccHHHHHHHHHHcCccCCceecCC---ce-----------EEEEEHHHHHHHHHcC
Confidence 47789999983 3 799999999999999998 899999996443 23 5999999999999886
Q ss_pred cccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 207 ASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 207 ~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
. .+.++++ +|.+++++|+.|+.+.||+++|..+|++.+-|+|++|.
T Consensus 231 ~------~~~kV~~--~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gk 276 (294)
T COG2524 231 N------LDAKVSD--YMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGK 276 (294)
T ss_pred C------ccccHHH--HhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCc
Confidence 2 2567888 59999999999999999999999999999999998885
No 15
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.39 E-value=3.7e-12 Score=116.57 Aligned_cols=122 Identities=23% Similarity=0.276 Sum_probs=99.2
Q ss_pred cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022 27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA 106 (262)
Q Consensus 27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~ 106 (262)
..+|+|+|..+++++++++++|+.+|++.|.+++...+||+|++ ++++|+|+..|+.+
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~----------------------g~~iG~vt~~dl~~ 253 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ----------------------QQVQGVFTDGDLRR 253 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC----------------------CcEEEEecHHHHHH
Confidence 67899999654348899999999999999999999999999965 68999999999887
Q ss_pred HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceec
Q 046022 107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELV 185 (262)
Q Consensus 107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~ 185 (262)
.+.... ....+|.++|.. + +.++.+++++.+|++.|. .++.++||+ +++
T Consensus 254 ~~~~~~--------------~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~---------- 303 (321)
T PRK11543 254 WLVGGG--------------ALTTPVNEAMTR---G--GTTLQAQSRAIDAKEILMKRKITAAPVV-DEN---------- 303 (321)
T ss_pred HHhCCC--------------CcCCcHHHhcCC---C--CEEECCCCCHHHHHHHHHHcCCCEEEEE-cCC----------
Confidence 665421 123468899972 3 578999999999999998 799999996 422
Q ss_pred ccCCeeeEecHHHHHHH
Q 046022 186 ESASSYQMLTQMDLLRF 202 (262)
Q Consensus 186 ~~~~~~giITqsDIir~ 202 (262)
++.+|+||+.||++.
T Consensus 304 --~~lvGvIt~~di~~~ 318 (321)
T PRK11543 304 --GKLTGAINLQDFYQA 318 (321)
T ss_pred --CeEEEEEEHHHHHhc
Confidence 133599999999873
No 16
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.38 E-value=6.5e-12 Score=97.58 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=89.2
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.++++.++||+|.+ ++++|+|+..|++........
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~----------------------~~~~Givt~~dl~~~~~~~~~----- 54 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED----------------------GDLVGVVSRKDLLKASIGGAD----- 54 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----------------------CCEEEEEEHHHHHHHHHcCCC-----
Confidence 46799999999999999999999999999864 589999999999887753211
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
....+++++|.. .+. +.++.+++++.+++++|. ++++++||+.+++. +++.+|+||++
T Consensus 55 --------~~~~~~~~~~~~-~~~--~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~----------~~~l~Gvit~~ 113 (118)
T cd04617 55 --------LQKVPVGVIMTR-MPN--ITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDE----------GLEVIGRITKT 113 (118)
T ss_pred --------ccCCCHHHHhCC-CCC--cEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCc----------cceEEEEEEhh
Confidence 112357788862 123 578999999999999988 68899999643210 12346999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 114 ~l~~ 117 (118)
T cd04617 114 NITK 117 (118)
T ss_pred heec
Confidence 9976
No 17
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.37 E-value=5.4e-12 Score=124.39 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=105.2
Q ss_pred HHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeH
Q 046022 22 QRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTM 101 (262)
Q Consensus 22 ~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~ 101 (262)
+..+..++++|+|. ++..++++++++.+|++.|.+++...+||+|++ ++++|+|+.
T Consensus 441 ~~~L~~~~V~dim~--~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~----------------------g~lvGiVt~ 496 (574)
T PRK01862 441 RERLRTTQMRELIQ--PAQTVVPPTASVADMTRVFLEYPVKYLYVVDDD----------------------GRFRGAVAL 496 (574)
T ss_pred hhHHhhCcHHHHhc--CCCceeCCCCCHHHHHHHHHhCCCceEEEEcCC----------------------CeEEEEEEH
Confidence 45788899999995 356789999999999999999999999999865 689999999
Q ss_pred HHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccc
Q 046022 102 LDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENIS 180 (262)
Q Consensus 102 ~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~ 180 (262)
.|+.+.+..... ....++.++|.. + +.++++++++.++++.|. ++.+++||+.+++.
T Consensus 497 ~dL~~~l~~~~~-------------~~~~~v~dim~~---~--~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~---- 554 (574)
T PRK01862 497 KDITSDLLDKRD-------------TTDKTAADYAHT---P--FPLLTPDMPLGDALEHFMAFQGERLPVVESEAS---- 554 (574)
T ss_pred HHHHHHhhcccc-------------cccchHHHhccC---C--CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCC----
Confidence 999886653211 012368888862 3 578999999999999998 68999999643321
Q ss_pred cceecccCCeeeEecHHHHHHHHHhh
Q 046022 181 GVELVESASSYQMLTQMDLLRFMMNH 206 (262)
Q Consensus 181 g~~~~~~~~~~giITqsDIir~L~~~ 206 (262)
++..|+||+.|+++++.+.
T Consensus 555 -------~~liGvIt~~DIl~~l~~~ 573 (574)
T PRK01862 555 -------PTLAGVVYKTSLLDAYRRM 573 (574)
T ss_pred -------CeEEEEEEHHHHHHHHHhh
Confidence 2346999999999988653
No 18
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.35 E-value=2.7e-12 Score=122.78 Aligned_cols=123 Identities=19% Similarity=0.313 Sum_probs=102.5
Q ss_pred ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022 28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH 107 (262)
Q Consensus 28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~ 107 (262)
+++++++.. +.+++++.+||.+|...|.+++++++-+++.. +...||||..|+...
T Consensus 149 trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~----------------------~~~~GIvT~~dl~~~ 204 (610)
T COG2905 149 TRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDS----------------------GPLLGIVTRKDLRSR 204 (610)
T ss_pred HHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCC----------------------CCccceeehHHHHHH
Confidence 468888854 56799999999999999999999988888764 578899999999998
Q ss_pred HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022 108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE 186 (262)
Q Consensus 108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~ 186 (262)
+..+.. -...+|+++|+. + ++++++++-+++||-+|. +++||+||..+
T Consensus 205 v~~~g~-------------~~~~~V~evmT~-p----~~svd~~~~~feAml~m~r~~I~hl~V~e~------------- 253 (610)
T COG2905 205 VIADGR-------------SKTQKVSEVMTS-P----VISVDRGDFLFEAMLMMLRNRIKHLPVTED------------- 253 (610)
T ss_pred HHhcCC-------------Ccccchhhhhcc-C----ceeecCcchHHHHHHHHHHhCCceeeeecC-------------
Confidence 886321 113589999983 2 799999999999999998 79999999643
Q ss_pred cCCeeeEecHHHHHHHHHhh
Q 046022 187 SASSYQMLTQMDLLRFMMNH 206 (262)
Q Consensus 187 ~~~~~giITqsDIir~L~~~ 206 (262)
|+++||||-+||++.+..+
T Consensus 254 -gq~~Gilt~~dIl~l~s~~ 272 (610)
T COG2905 254 -GQPLGILTLTDILRLFSQN 272 (610)
T ss_pred -CeeeEEeeHHHHHHhhCCC
Confidence 3457999999999987654
No 19
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=1.9e-11 Score=94.33 Aligned_cols=111 Identities=22% Similarity=0.344 Sum_probs=88.3
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
.+.++++++|+.+|++.|.+++...+||+|++ ++++|+++..|+.+.+.....
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----------------------g~~~G~vt~~dl~~~~~~~~~----- 54 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH----------------------GKLAGVLTKTDVVRQMGRCGG----- 54 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC----------------------CCEEEEEehHHHHHHHhhcCC-----
Confidence 36789999999999999999999999999865 589999999999886643110
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
.....++.++|.. + +.++.+++++.+|++.|. ++.+++||+ +++ +..+|+||++
T Consensus 55 -------~~~~~~v~~~~~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~------------~~~~Gvi~~~ 109 (114)
T cd04619 55 -------PGCTAPVENVMTR---A--VVSCRPGDLLHDVWQVMKQRGLKNIPVV-DEN------------ARPLGVLNAR 109 (114)
T ss_pred -------CcccCCHHHHhcC---C--CeeECCCCCHHHHHHHHHHcCCCeEEEE-CCC------------CcEEEEEEhH
Confidence 1123478888862 3 578999999999999998 799999996 322 2345999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
|+++
T Consensus 110 dl~~ 113 (114)
T cd04619 110 DALK 113 (114)
T ss_pred hhcc
Confidence 9874
No 20
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.33 E-value=2.9e-11 Score=93.12 Aligned_cols=111 Identities=21% Similarity=0.346 Sum_probs=88.1
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.++++..+||++.++ ++++|+++..|+++++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~---------------------~~~~G~v~~~dl~~~~~~~~~----- 55 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRE---------------------SDAYGIVTMRDILKKVVAEGR----- 55 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCC---------------------CcEEEEEehHHHHHHHHhCCC-----
Confidence 567899999999999999999999999998641 489999999999987654210
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
.....++.++|.. + +.++.+++++.++++.|. .+.+++||+ +++ + +.|+||+.
T Consensus 56 -------~~~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-d~~--~-----------~~Gvi~~~ 109 (114)
T cd04630 56 -------DPDRVNVYEIMTK---P--LISVSPDMDIKYCARLMERTNIRRAPVV-ENN--E-----------LIGIISLT 109 (114)
T ss_pred -------CCCccCHHHHhcC---C--CeeECCCCCHHHHHHHHHHcCCCEeeEe-eCC--E-----------EEEEEEHH
Confidence 0112468888862 3 688999999999999998 588999995 331 2 35999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 110 dl~~ 113 (114)
T cd04630 110 DIFL 113 (114)
T ss_pred Hhhc
Confidence 9975
No 21
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.32 E-value=3.2e-11 Score=92.83 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=87.6
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+..++++++++.+|++.|.++++..+||+++. ++++|+++..|+...+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~dl~~~~~~~~~----- 54 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD----------------------GGVVGIITLPDLLRALEADEA----- 54 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC----------------------CCEEEEEEHHHHHHHHhcccc-----
Confidence 45688999999999999999999999999864 589999999999887654211
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
....++.++|.. + +.++.+++++.++++.|. ++.+++||+.++.. +...|+||++
T Consensus 55 --------~~~~~~~~~~~~---~--~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~-----------~~~~Gvit~~ 110 (115)
T cd04593 55 --------GEPSAVDEVATP---P--LLTVHPDEPLAHALDRMASRGLRQLPVVDRGNP-----------GQVLGLLTRE 110 (115)
T ss_pred --------cccccHHHhccC---C--ceEECCCCCHHHHHHHHHHcCCceeeEEeCCCC-----------CeEEEEEEhH
Confidence 012347777752 3 578999999999999998 78899999633211 2346999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 111 di~~ 114 (115)
T cd04593 111 NVLL 114 (115)
T ss_pred Hhhc
Confidence 9986
No 22
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=3.1e-11 Score=91.94 Aligned_cols=111 Identities=17% Similarity=0.324 Sum_probs=88.2
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++++++++.++.+|++.|.++++..+||++++ ++++|+++..|++..+.....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~----------------------~~~~Giv~~~~l~~~~~~~~~----- 54 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG----------------------GRLVGIFSERDIVRKVALRGA----- 54 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC----------------------CCEEEEEehHHHHHHHhhcCC-----
Confidence 46788999999999999999999999999864 589999999999987764210
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
.....++.++|.. . +.++.+++++.++++.|. .+.+++||..+ +++ +|+||+.
T Consensus 55 -------~~~~~~~~~~~~~---~--~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~---~~~-----------~Gvit~~ 108 (113)
T cd04623 55 -------SALDTPVSEIMTR---N--VITVTPDDTVDEAMALMTERRFRHLPVVDG---GKL-----------VGIVSIG 108 (113)
T ss_pred -------CccccCHHHhcCC---C--cEEECCCCcHHHHHHHHHHcCCCEeEEEeC---CEE-----------EEEEEHH
Confidence 0012367888862 2 578999999999999998 68889999633 223 5999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
||++|
T Consensus 109 di~~~ 113 (113)
T cd04623 109 DVVKA 113 (113)
T ss_pred HhhcC
Confidence 99875
No 23
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.31 E-value=4.1e-11 Score=91.96 Aligned_cols=115 Identities=19% Similarity=0.333 Sum_probs=87.3
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++|+.+|++.|.++++..+||+|.. ++++|+++..|+++++......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~----------------------~~~~Giv~~~dl~~~~~~~~~~---- 55 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE----------------------GKYVGTISLTDILWKLKGLENL---- 55 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC----------------------CcEEEEEeHHHHHHHhhccCch----
Confidence 46789999999999999999999999999864 5899999999999877642110
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceecccCCeeeEecHHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMD 198 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsD 198 (262)
+.......++.++|.. . +.++.+++++.+|++.|.+ ...+||+ +++ ++.+|+||+.|
T Consensus 56 ----~~~~~~~~~v~~~~~~---~--~~~v~~~~~l~~a~~~~~~-~~~~~Vv-~~~------------~~~~Gvit~~d 112 (116)
T cd04643 56 ----DLERLVDLKVIDVMNT---D--VPVIIDDADIEEILHLLID-QPFLPVV-DDD------------GIFIGIITRRE 112 (116)
T ss_pred ----hHHHHhCCcHHHHhcC---C--CceecCCCCHHHHHHHHhc-CCceeEE-eCC------------CeEEEEEEHHH
Confidence 1111124578888862 2 5789999999999999984 2458885 422 23469999999
Q ss_pred HHHH
Q 046022 199 LLRF 202 (262)
Q Consensus 199 Iir~ 202 (262)
++++
T Consensus 113 il~~ 116 (116)
T cd04643 113 ILKA 116 (116)
T ss_pred hhcC
Confidence 9874
No 24
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=2.5e-11 Score=93.33 Aligned_cols=110 Identities=19% Similarity=0.304 Sum_probs=85.6
Q ss_pred cEEEEcCCCCHHHHHHHHHhCC-CceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANK-VVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS 117 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~-i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~ 117 (262)
++.++++++|+.+|++.|.+++ ...+||+|.+ ++++|+++..|++......
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~dl~~~~~~~------ 53 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE----------------------GRYVGIISLADLRAIPTSQ------ 53 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC----------------------CcEEEEEEHHHHHHHHHhh------
Confidence 4678999999999999998775 8899999864 5899999999998866421
Q ss_pred CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022 118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ 196 (262)
Q Consensus 118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq 196 (262)
....++.++|.. ... +.++.+++++.+|++.|. .+.+++||+.+ + +..+|+||.
T Consensus 54 ---------~~~~~v~~~~~~-~~~--~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~------------~~~~Gvl~~ 108 (114)
T cd04801 54 ---------WAQTTVIQVMTP-AAK--LVTVLSEESLAEVLKLLEEQGLDELAVVED-S------------GQVIGLITE 108 (114)
T ss_pred ---------ccccchhhhhcc-ccc--ceEECCCCcHHHHHHHHHHCCCCeeEEEcC-C------------CcEEEEEec
Confidence 113467888862 112 468999999999999998 78999999633 2 234599999
Q ss_pred HHHHH
Q 046022 197 MDLLR 201 (262)
Q Consensus 197 sDIir 201 (262)
.||++
T Consensus 109 ~di~~ 113 (114)
T cd04801 109 ADLLR 113 (114)
T ss_pred cceec
Confidence 99875
No 25
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.30 E-value=9.1e-11 Score=113.07 Aligned_cols=129 Identities=18% Similarity=0.200 Sum_probs=103.5
Q ss_pred cchHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeE
Q 046022 16 HAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHY 95 (262)
Q Consensus 16 ~~~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~ 95 (262)
..-..|.+.+...+++++|.. +.+++++++|+.+|++.|.++++..+||+|. +++
T Consensus 76 ~~i~~qae~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-----------------------gkl 130 (475)
T TIGR01303 76 LPIPAVKQTVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE-----------------------DRP 130 (475)
T ss_pred CCHHHHHHHHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-----------------------CEE
Confidence 444566778889999999853 5679999999999999999999999999874 489
Q ss_pred EEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCC
Q 046022 96 IGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDS 174 (262)
Q Consensus 96 vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~ 174 (262)
+|+|+..|+.. . + ...+++++|+. + ++++.+++++.+|+++|. ++++++||+ ++
T Consensus 131 vGIVT~rDL~~-~--~----------------~~~~V~dIMt~---~--litv~~~~sL~eAl~lM~~~~i~~LPVV-D~ 185 (475)
T TIGR01303 131 VGLVTDSDLLG-V--D----------------RFTQVRDIMST---D--LVTAPADTEPRKAFDLLEHAPRDVAPLV-DA 185 (475)
T ss_pred EEEEEHHHhhc-C--C----------------CCCCHHHHccC---C--ceEeCCCCcHHHHHHHHHHcCCCEEEEE-cC
Confidence 99999999621 1 0 12479999972 3 688999999999999998 799999996 32
Q ss_pred CCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022 175 RMENISGVELVESASSYQMLTQMDLLRFMMNH 206 (262)
Q Consensus 175 ~~~~~~g~~~~~~~~~~giITqsDIir~L~~~ 206 (262)
+ +.++|+||++||+++....
T Consensus 186 ~------------g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 186 D------------GTLAGILTRTGALRATIYT 205 (475)
T ss_pred C------------CeEEEEEEHHHHHHHHhCC
Confidence 2 2345999999999977654
No 26
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=6.3e-11 Score=93.03 Aligned_cols=120 Identities=14% Similarity=0.285 Sum_probs=84.4
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
.++++++++|+.+|++.|.++++.++||+|.. ++++|+++..|+............
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~----------------------~~~~Giv~~~dl~~~~~~~~~~~~-- 57 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK----------------------GKLIGNISASDLKGLLLSPDDLLL-- 57 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC----------------------CcEEEEEEHHHhhhhhcCcchhhc--
Confidence 46789999999999999999999999999864 589999999998886643211000
Q ss_pred CCcchHHhhhccccc---cccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEe
Q 046022 119 DAPDDLDKKMSAPVS---SIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQML 194 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~---~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giI 194 (262)
....... .+...+. +.|. .. +..+.+++++.+|+++|. ++.+++||+.+ . ++.+|+|
T Consensus 58 ~~~~~~~-~~~~~~~~~~~~~~---~~--~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~------------~~~~Gii 118 (126)
T cd04642 58 YRTITFK-ELSEKFTDSDGVKS---RP--LITCTPSSTLKEVITKLVANKVHRVWVVDE-E------------GKPIGVI 118 (126)
T ss_pred ccchhhh-hhhhhccccccccc---CC--CeEECCCCcHHHHHHHHHHhCCcEEEEECC-C------------CCEEEEE
Confidence 0000000 0000112 2333 12 578999999999999998 68999999633 2 2346999
Q ss_pred cHHHHHH
Q 046022 195 TQMDLLR 201 (262)
Q Consensus 195 TqsDIir 201 (262)
|++||++
T Consensus 119 t~~dil~ 125 (126)
T cd04642 119 TLTDIIS 125 (126)
T ss_pred EHHHHhc
Confidence 9999986
No 27
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=2.4e-11 Score=93.00 Aligned_cols=112 Identities=22% Similarity=0.280 Sum_probs=88.0
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.+|++.|.++++.++||++.+ ++++|+++..|+++.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~----------------------~~~~G~v~~~~l~~~~~~~~~----- 54 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN----------------------GNLVGFLSEQDCLKQLLESSY----- 54 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC----------------------CeEEEEeehHHHHHHhhhhhh-----
Confidence 45789999999999999999999999999864 589999999999887764210
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
......++.++|.. . +..+.+++++.++++.|. ++.+++||+.+ + . .+|+||+.
T Consensus 55 ------~~~~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~--~-----------~~Gvit~~ 109 (114)
T cd04629 55 ------HCDGVATVRDIMTT---E--VLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-G--K-----------LVGQISRR 109 (114)
T ss_pred ------ccCCCccHHHHhcc---C--ceEECCCCcHHHHHHHHHHhCCCccCEEEC-C--E-----------EEEEEEHH
Confidence 01123468888862 2 577999999999999988 67888999633 1 2 35999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
||+++
T Consensus 110 di~~~ 114 (114)
T cd04629 110 DVLRA 114 (114)
T ss_pred HHhcC
Confidence 99874
No 28
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=8.5e-11 Score=90.18 Aligned_cols=108 Identities=19% Similarity=0.192 Sum_probs=86.2
Q ss_pred EEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCCC
Q 046022 40 IVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDD 119 (262)
Q Consensus 40 lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~ 119 (262)
.+++++++++.+|++.|.++++..+||++.+ ++++|+++..|++..+.....
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----------------------~~~~G~v~~~dl~~~~~~~~~------ 55 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVDEN----------------------GRLLGTVTDGDIRRALLKGLS------ 55 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEECCC----------------------CCEEEEEEcHHHHHHHhcCCC------
Confidence 3678999999999999999999999999864 589999999999876654211
Q ss_pred CcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHH
Q 046022 120 APDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMD 198 (262)
Q Consensus 120 ~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsD 198 (262)
...++.++|.. . +.++.+++++.++++.|. .+.+++||+.++ ++.+|+||++|
T Consensus 56 --------~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-------------~~~~Gvit~~d 109 (113)
T cd04607 56 --------LDDPVSEVMNR---N--PITAKVGSSREEILALMRERSIRHLPILDEE-------------GRVVGLATLDD 109 (113)
T ss_pred --------cCCCHHHhhcC---C--CEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-------------CCEEEEEEhHH
Confidence 12467888862 2 578999999999999998 689999996322 23469999999
Q ss_pred HHH
Q 046022 199 LLR 201 (262)
Q Consensus 199 Iir 201 (262)
|+.
T Consensus 110 i~~ 112 (113)
T cd04607 110 LLS 112 (113)
T ss_pred hcc
Confidence 863
No 29
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=7e-11 Score=91.89 Aligned_cols=120 Identities=24% Similarity=0.369 Sum_probs=89.3
Q ss_pred CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022 38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS 117 (262)
Q Consensus 38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~ 117 (262)
++++++++++++.+|++.|.++++..+||++.. ++++|+++..|++.++.......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----------------------~~~~Giv~~~~l~~~~~~~~~~~-- 57 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGD----------------------RRLVGIVTQRDLLRHARPDGRRP-- 57 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCC----------------------CCEEEEEEHHHHHhhhcccccch--
Confidence 467899999999999999999999999999864 58999999999987765321000
Q ss_pred CCCcchH-HhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEec
Q 046022 118 DDAPDDL-DKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLT 195 (262)
Q Consensus 118 ~~~~~~~-~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giIT 195 (262)
. .... ......++.++|.. . +.++.+++++.++++.|. ++.+++||+.++ +..+|+||
T Consensus 58 -~-~~~~~~~~~~~~i~~~~~~---~--~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-------------g~~~Gvit 117 (124)
T cd04600 58 -L-RGRLRGRDKPETVGDIMSP---P--VVTVRPDTPIAELVPLLADGGHHHVPVVDED-------------RRLVGIVT 117 (124)
T ss_pred -h-hhhhhcccccccHHHhccC---C--CeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-------------CCEEEEEE
Confidence 0 0000 00113467888862 3 578999999999999998 689999996322 23469999
Q ss_pred HHHHHH
Q 046022 196 QMDLLR 201 (262)
Q Consensus 196 qsDIir 201 (262)
+.|+++
T Consensus 118 ~~di~~ 123 (124)
T cd04600 118 QTDLIA 123 (124)
T ss_pred hHHhhc
Confidence 999975
No 30
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.29 E-value=1.2e-10 Score=112.88 Aligned_cols=167 Identities=17% Similarity=0.235 Sum_probs=117.4
Q ss_pred HHhhhcc-eeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEe
Q 046022 22 QRLLREA-KVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLT 100 (262)
Q Consensus 22 ~~~l~~~-~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs 100 (262)
++.+... .++|+|. ++++++++++|+.+|++.|.++++.++||++.. ++++|+|+
T Consensus 80 ~~~I~~vk~~~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~----------------------g~lvGiVt 135 (486)
T PRK05567 80 AEEVRKVKRSESGVV--TDPVTVTPDTTLAEALALMARYGISGVPVVDEN----------------------GKLVGIIT 135 (486)
T ss_pred HHHHHHhhhhhhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC----------------------CEEEEEEE
Confidence 4444443 3788885 477899999999999999999999999999964 68999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccc
Q 046022 101 MLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENI 179 (262)
Q Consensus 101 ~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~ 179 (262)
..|+.... . ...++.++|.. ++ ++++.+++++.++++.|. ++++.+||+ ++.
T Consensus 136 ~~DL~~~~-~-----------------~~~~V~dim~~--~~--~v~v~~~~sl~eal~~m~~~~~~~lpVV-De~---- 188 (486)
T PRK05567 136 NRDVRFET-D-----------------LSQPVSEVMTK--ER--LVTVPEGTTLEEALELLHEHRIEKLPVV-DDN---- 188 (486)
T ss_pred HHHhhhcc-c-----------------CCCcHHHHcCC--CC--CEEECCCCCHHHHHHHHHHcCCCEEEEE-cCC----
Confidence 99975321 0 12368889862 23 688999999999999998 789999995 432
Q ss_pred ccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 180 SGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 180 ~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
+...|+||.+||++++... ... ...-+.|.+ ...+.+++ ...++++.|.+.++..+ |+|.
T Consensus 189 --------g~lvGiIT~~DLl~~~~~p-~a~----~d~~g~l~V--~aai~~~~--~~~e~a~~L~~agvdvi-vvD~ 248 (486)
T PRK05567 189 --------GRLKGLITVKDIEKAEEFP-NAC----KDEQGRLRV--GAAVGVGA--DNEERAEALVEAGVDVL-VVDT 248 (486)
T ss_pred --------CcEEEEEEhHHhhhhhhCC-Ccc----cccCCCEEE--EeecccCc--chHHHHHHHHHhCCCEE-EEEC
Confidence 2345999999999986321 100 000111101 12333333 23888899999998855 5554
No 31
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=6.4e-11 Score=92.24 Aligned_cols=123 Identities=26% Similarity=0.407 Sum_probs=90.4
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.+++...+||++.+. ++++|+|+..|+..++.....+....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~---------------------~~~~G~v~~~dl~~~~~~~~~~~~~~ 60 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGT---------------------GKLVGIITATDILKYLGGGEKFNKIK 60 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCC---------------------CEEEEEEEHHHHHHHhhccchhcccc
Confidence 467889999999999999999999999998641 58999999999998776422110000
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
.. ........++.++|.. . +.++.+++++.++++.|. .+.+.+||. ++. +..+|+||..
T Consensus 61 ~~--~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~-~~~------------~~~~Gvit~~ 120 (125)
T cd04631 61 TG--NGLEAINEPVRSIMTR---N--VITITPDDSIKDAAELMLEKRVGGLPVV-DDD------------GKLVGIVTER 120 (125)
T ss_pred cc--ccchhhhcCHHHHhcC---C--ceEeCCCCcHHHHHHHHHHcCCceEEEE-cCC------------CcEEEEEEHH
Confidence 00 0011234578888862 3 578999999999999998 688899995 321 2345999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
||++|
T Consensus 121 di~~~ 125 (125)
T cd04631 121 DLLKA 125 (125)
T ss_pred HhhcC
Confidence 99875
No 32
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.28 E-value=1.1e-10 Score=114.35 Aligned_cols=193 Identities=17% Similarity=0.245 Sum_probs=126.5
Q ss_pred ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022 28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH 107 (262)
Q Consensus 28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~ 107 (262)
.+|+|+|. ++++++++++++.+|++.|.++++..+||+|.+ ++++|+|+..|+...
T Consensus 68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----------------------g~l~Givt~~di~~~ 123 (546)
T PRK14869 68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE----------------------GKLLGLVSLSDLARA 123 (546)
T ss_pred CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC----------------------CEEEEEEEHHHHHHH
Confidence 68999995 477899999999999999999999999999965 689999999999987
Q ss_pred HhCCCC---CCCCCCCcchHHhhh------------------------ccccccccccCCCCCeeEEeCCCCCHHHHHHH
Q 046022 108 IAGDDQ---MNGSDDAPDDLDKKM------------------------SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEV 160 (262)
Q Consensus 108 l~~~~~---l~~~~~~~~~~~~~~------------------------~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~ 160 (262)
+..... +....-...++.+.+ ...+.+.|. ++. ++.+.....+.. ..
T Consensus 124 ~~~~~~~~~~~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~---~~~-lvi~gdr~d~~~--~a 197 (546)
T PRK14869 124 YMDILDPEILSKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIE---EGD-IVIVGDREDIQL--AA 197 (546)
T ss_pred HHhhcchhhhhhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhcc---CCC-EEEEcCcHHHHH--HH
Confidence 775221 100000000000000 011222232 122 444544433322 23
Q ss_pred HhcCCCeeEeecCCCCc-ccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccC-cCeEEEeCCCcHH
Q 046022 161 FSKGIHRALVPMDSRME-NISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALN-ENVFAITESTKVI 238 (262)
Q Consensus 161 m~~g~~rv~V~~~~~~~-~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~-~~v~tv~~~~~~~ 238 (262)
+.+|+..++|..+.... .+. ++.+......|.|+.|..+....-. ...++++ +|+ ++++++++++++.
T Consensus 198 i~~~~~~lIlt~g~~~~~~v~--~la~~~~i~ii~t~~dt~~t~~~l~------~~~~V~~--iM~~~~~~~~~~~~~~~ 267 (546)
T PRK14869 198 IEAGVRLLIITGGAPVSEDVL--ELAKENGVTVISTPYDTFTTARLIN------QSIPVSY--IMTTEDLVTFSKDDYLE 267 (546)
T ss_pred HHcCCCEEEECCCCCCCHHHH--HHHHhCCCeEEEecccHHHHHHHhh------cCCCHHH--hccCCCcEEECCCCcHH
Confidence 44788888774221110 000 1112334568999999887654422 1356777 498 8999999999999
Q ss_pred HHHHHHHhCCCcEEEEEcCCCC
Q 046022 239 DAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 239 ~A~~lM~~~~isav~VVd~~g~ 260 (262)
+|.+.|.+++++.+||||++|.
T Consensus 268 ~~~~~m~~~~~~~~PVvd~~g~ 289 (546)
T PRK14869 268 DVKEVMLKSRYRSYPVVDEDGK 289 (546)
T ss_pred HHHHHHHhcCCCceEEEcCCCC
Confidence 9999999999999999998874
No 33
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=5.3e-11 Score=89.78 Aligned_cols=93 Identities=19% Similarity=0.301 Sum_probs=77.3
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++.+++++.+|++.|.++++..+||+|++ ++++|+++..|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----------------------~~~~Giv~~~dl~~~~---------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD----------------------GKLSGIITERDLIAKS---------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC----------------------CCEEEEEEHHHHhcCC----------
Confidence 46789999999999999999999999999864 5899999999976410
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
. ++++.+++++.++++.|. ++.+++||. +++ +...|+||++
T Consensus 50 -----------------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-~~~------------~~~~Giit~~ 91 (96)
T cd04614 50 -----------------------E--VVTATKRTTVSECAQKMKRNRIEQIPII-NGN------------DKLIGLLRDH 91 (96)
T ss_pred -----------------------C--cEEecCCCCHHHHHHHHHHhCCCeeeEE-CCC------------CcEEEEEEHH
Confidence 0 367899999999999997 799999995 432 2345999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 92 di~~ 95 (96)
T cd04614 92 DLLK 95 (96)
T ss_pred Hhhc
Confidence 9986
No 34
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=4.7e-11 Score=94.52 Aligned_cols=123 Identities=20% Similarity=0.319 Sum_probs=90.0
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCC--
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNG-- 116 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~-- 116 (262)
+++++++++++.+|++.|.++++.++||+|++ ++++|+++..|+++++........
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~i~~~~l~~~~~~~~~~~~~~ 59 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE----------------------GRVVGIVSEGDLIRKIYKGKGLFYVT 59 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC----------------------CCEEEEEeHHHHHHHHhccCCccccc
Confidence 45789999999999999999999999999864 589999999999987764211000
Q ss_pred --CC---CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCe
Q 046022 117 --SD---DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASS 190 (262)
Q Consensus 117 --~~---~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~ 190 (262)
.. .......+....++.++|.. + +..+.+++++.+++++|. .+.+++||. ++ ++ .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~-~~--~~-----------~ 120 (132)
T cd04636 60 LLYSVIFLDESKIKKLLGKKVEEIMTK---K--VITVDEDTTIEDVARIMSKKNIKRLPVV-DD--GK-----------L 120 (132)
T ss_pred ccccccccchHHHHHHcCCCHHHhccC---C--ceEECCCCcHHHHHHHHHHCCCCeeEEE-EC--CE-----------E
Confidence 00 00001111123478888862 3 578999999999999998 688899995 32 12 3
Q ss_pred eeEecHHHHHHH
Q 046022 191 YQMLTQMDLLRF 202 (262)
Q Consensus 191 ~giITqsDIir~ 202 (262)
+|++|+.|+++|
T Consensus 121 iGvit~~dl~~~ 132 (132)
T cd04636 121 VGIISRGDIIRS 132 (132)
T ss_pred EEEEEHHHhhcC
Confidence 599999999986
No 35
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=6.7e-11 Score=90.20 Aligned_cols=109 Identities=20% Similarity=0.313 Sum_probs=87.2
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+.+++.+++|+.+|++.|.+++...+||++.+ ++++|+++..|+.+++....
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~----------------------~~~~G~v~~~~l~~~~~~~~------ 53 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD----------------------GHLVGLLTRDDLIRALAEGG------ 53 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC----------------------CcEEEEeeHHHHHHHHHhcC------
Confidence 35678999999999999999999999999864 58999999999988776421
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
...++.++|.. + +.++.+++++.++++.|. .+.+++||+ +++ ++.+|+||+.
T Consensus 54 ---------~~~~v~~~~~~---~--~~~i~~~~~~~~~~~~~~~~~~~~~~Vv-~~~------------~~~~G~it~~ 106 (111)
T cd04639 54 ---------PDAPVRGVMRR---D--FPTVSPSATLDAVLRLMQQGGAPAVPVV-DGS------------GRLVGLVTLE 106 (111)
T ss_pred ---------CCCcHHHHhcC---C--CcEECCCCcHHHHHHHHHhcCCceeeEE-cCC------------CCEEEEEEHH
Confidence 12368888862 3 578999999999999998 578899995 432 2346999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
|+.+|
T Consensus 107 dl~~~ 111 (111)
T cd04639 107 NVGEL 111 (111)
T ss_pred HhhcC
Confidence 99764
No 36
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.26 E-value=1e-10 Score=89.33 Aligned_cols=109 Identities=24% Similarity=0.326 Sum_probs=86.4
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+.+++++++++.+|++.|.+++...+||+++ ++++|+++..|++..+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~~l~~~~~~~~~----- 53 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-----------------------DPRLGIVTRTDLLDAVLLDGL----- 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-----------------------CeEEEEEEHHHHHHHHHcCCC-----
Confidence 3568899999999999999999999999985 379999999999886653211
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
....++.++|.. + +..+.+++++.++++.|. .+.+++||..+ + + .+|+||+.
T Consensus 54 --------~~~~~i~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~--~-----------~~G~it~~ 106 (111)
T cd04589 54 --------PSSTPVGEIATF---P--LITVDPDDFLFNALLLMTRHRIHRVVVREG-G--E-----------VVGVLEQT 106 (111)
T ss_pred --------CCCCCHHHHhCC---C--cEEECCCCcHHHHHHHHHHhCccEEEEeeC-C--E-----------EEEEEEhH
Confidence 113467888862 3 578999999999999998 68889999532 1 2 35999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
|+++|
T Consensus 107 dl~~~ 111 (111)
T cd04589 107 DLLSF 111 (111)
T ss_pred HhhcC
Confidence 99986
No 37
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25 E-value=1.1e-10 Score=93.67 Aligned_cols=122 Identities=21% Similarity=0.245 Sum_probs=88.6
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCC--C
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMN--G 116 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~--~ 116 (262)
+++++++++++.+|++.|.++++..+||+|+. ++++|+++..|+++++....... +
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~----------------------~~~~Giv~~~dl~~~~~~~~~~~~~~ 59 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN----------------------GKPVGVITYRDLAFAEFEDNERGLPK 59 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC----------------------CCEEEEEeHHHHHHHhhcccccccch
Confidence 35688999999999999999999999999864 68999999999998775321000 0
Q ss_pred CCCC-------cc-hHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceeccc
Q 046022 117 SDDA-------PD-DLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVES 187 (262)
Q Consensus 117 ~~~~-------~~-~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~ 187 (262)
.... .. ........+++++|.. . +..+.+++++.++++.|. ++.+++||..+ + +
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~--~--------- 122 (135)
T cd04621 60 KSIKMKRKAGQKRYRYVKEVPLVAEDIMTE---E--IITVSPNDDVVDAAKLMLEANISGLPVVDN-D--N--------- 122 (135)
T ss_pred hhhhhhhhcccccccccccccccHHHhcCC---C--CeEECCCCCHHHHHHHHHHcCCCEEEEEeC-C--E---------
Confidence 0000 00 0001124578899862 2 578999999999999997 68889999633 1 2
Q ss_pred CCeeeEecHHHHHH
Q 046022 188 ASSYQMLTQMDLLR 201 (262)
Q Consensus 188 ~~~~giITqsDIir 201 (262)
.+|+||++||++
T Consensus 123 --~~Gvit~~di~~ 134 (135)
T cd04621 123 --IVGVITKTDICR 134 (135)
T ss_pred --EEEEEEHHHHhh
Confidence 359999999986
No 38
>PRK11573 hypothetical protein; Provisional
Probab=99.24 E-value=2.7e-10 Score=108.28 Aligned_cols=164 Identities=13% Similarity=0.182 Sum_probs=119.3
Q ss_pred hhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHH
Q 046022 25 LREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDI 104 (262)
Q Consensus 25 l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Di 104 (262)
|.+.+|+|+|+...++++++.++++.++++.+.+++.+++||++.+ .+.++|++...|+
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~---------------------~D~IiGiv~~kDl 242 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDS---------------------LDDAISMLRVREA 242 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCC---------------------CCceEEEEEHHHH
Confidence 4778999999999999999999999999999999999999999754 2589999999999
Q ss_pred HHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccce
Q 046022 105 LAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVE 183 (262)
Q Consensus 105 l~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~ 183 (262)
+.+....... .. ..+.+++. . +..|.++.++.++++.|. ++.|-..| .|+-
T Consensus 243 l~~~~~~~~~--------~~-----~~l~~~~r----~--~~~Vpe~~~l~~lL~~~~~~~~~~AiV-vDEy-------- 294 (413)
T PRK11573 243 YRLMTEKKEF--------TK-----ENMLRAAD----E--IYFVPEGTPLSTQLVKFQRNKKKVGLV-VDEY-------- 294 (413)
T ss_pred HHHhhccCcC--------CH-----HHHHhhcc----C--CeEeCCCCcHHHHHHHHHhcCCeEEEE-EecC--------
Confidence 9765431111 00 12334443 2 477999999999999999 45555555 4432
Q ss_pred ecccCCeeeEecHHHHHHHHHhhc-ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHH
Q 046022 184 LVESASSYQMLTQMDLLRFMMNHA-SELKDITSHSIRELGALNENVFAITESTKVIDAIKCM 244 (262)
Q Consensus 184 ~~~~~~~~giITqsDIir~L~~~~-~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM 244 (262)
|...||||.+||+.-+...+ ++..+-....+.. .+...+.|+...++.+..+.+
T Consensus 295 ----G~~~GiVTleDilEeivGei~de~d~~~~~~i~~---~~~~~~~v~G~~~l~d~~~~l 349 (413)
T PRK11573 295 ----GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTP---QNDGSVIIDGTANVREINKAF 349 (413)
T ss_pred ----CCeEEEeeHHHHHHHHhCCCCcccCcccccceEE---ecCCEEEEEeeeEHHHHHHHh
Confidence 23459999999999988765 2222111112222 234568889999998888877
No 39
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.7e-10 Score=90.09 Aligned_cols=118 Identities=17% Similarity=0.232 Sum_probs=83.9
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.+|++.|.++++.++||+|.+. ++++|+++..|+++++......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~---------------------~~~~Giv~~~dl~~~~~~~~~~---- 56 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEES---------------------GEVIGILSQRRLVEFLWENARS---- 56 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCC---------------------CcEEEEEEHHHHHHHHHHhHHh----
Confidence 467899999999999999999999999998641 4799999999998876431100
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
....+........+.++|.. + +.++.+++++.+|++.|. ++.+++||+ +++ ++++|+||++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv-d~~------------~~~vGiit~~ 118 (123)
T cd04627 57 FPGLDPLYPIPLRDLTIGTS---D--VISINGDQPLIDALHLMHNEGISSVAVV-DNQ------------GNLIGNISVT 118 (123)
T ss_pred ccchhhhhhhhhhhcccCcC---C--ceEeCCCCCHHHHHHHHHHcCCceEEEE-CCC------------CcEEEEEeHH
Confidence 00000000011123345542 3 578999999999999998 789999996 432 2346999999
Q ss_pred HH
Q 046022 198 DL 199 (262)
Q Consensus 198 DI 199 (262)
||
T Consensus 119 di 120 (123)
T cd04627 119 DV 120 (123)
T ss_pred Hh
Confidence 97
No 40
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.24 E-value=7.8e-11 Score=93.60 Aligned_cols=124 Identities=17% Similarity=0.270 Sum_probs=89.6
Q ss_pred CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCC----
Q 046022 38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQ---- 113 (262)
Q Consensus 38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~---- 113 (262)
+++.++++++++.+|++.|.++++.++||++++ ++++|+++..|+++.+.....
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~----------------------~~~~Gvi~~~dl~~~~~~~~~~~~~ 59 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD----------------------GRLVGIVSEGDLLRRAELGTERRRA 59 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEECCC----------------------CCEEEEeeHHHHHHHhcccCcchhh
Confidence 467889999999999999999999999999864 589999999999876553210
Q ss_pred -CCCCCCCcch----HHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceeccc
Q 046022 114 -MNGSDDAPDD----LDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVES 187 (262)
Q Consensus 114 -l~~~~~~~~~----~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~ 187 (262)
+......... .......++.++|.. . +..+.+++++.++++.|. .+.+++||+ +. +
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~l~Vv-d~-g----------- 121 (135)
T cd04586 60 RWLDLLAGAEELAAAFVRSHGRKVADVMTR---P--VVTVGEDTPLAEVAELMEEHRIKRVPVV-RG-G----------- 121 (135)
T ss_pred hHHHHhcchHHHHHHHHHhcCCCHHHHhCC---C--ceEeCCCCcHHHHHHHHHHcCCCccCEe-cC-C-----------
Confidence 0000000000 001123468888852 2 578999999999999998 789999995 42 1
Q ss_pred CCeeeEecHHHHHHH
Q 046022 188 ASSYQMLTQMDLLRF 202 (262)
Q Consensus 188 ~~~~giITqsDIir~ 202 (262)
..+|+||+.|++++
T Consensus 122 -~~~Gvit~~di~~~ 135 (135)
T cd04586 122 -RLVGIVSRADLLRA 135 (135)
T ss_pred -EEEEEEEhHhhhcC
Confidence 23599999999863
No 41
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.24 E-value=1.2e-10 Score=88.75 Aligned_cols=112 Identities=18% Similarity=0.263 Sum_probs=87.6
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.+|++.|.++++..+||++.+ ++++|+++..|+.+++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------~~~~G~v~~~~l~~~~~~~~~~---- 55 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD----------------------GRLVGIVSLDDIREILFDPSLY---- 55 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC----------------------CCEEEEEEHHHHHHHHhccccc----
Confidence 56789999999999999999999999999864 5899999999998766432110
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
-..++.++|.. . +.++.+++++.++++.|. .+.+++||+.++. +..+|++|+.
T Consensus 56 ---------~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~------------~~~~Gvvt~~ 109 (114)
T cd04613 56 ---------DLVVASDIMTK---P--PVVVYPEDSLEDALKKFEDSDYEQLPVVDDDP------------GKLLGILSRS 109 (114)
T ss_pred ---------ccEEHHHhccC---C--CcEEcCCCCHHHHHHHHhhCCccEeeEEeCCC------------CEEEEEEEhH
Confidence 02468888862 2 578999999999999998 6888999963311 1235999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
|++.+
T Consensus 110 di~~~ 114 (114)
T cd04613 110 DLLSA 114 (114)
T ss_pred HhhcC
Confidence 99763
No 42
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.3e-10 Score=90.13 Aligned_cols=120 Identities=23% Similarity=0.413 Sum_probs=89.1
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++.+++|+.+|++.|.++++..+||++.+ ++++|+++..|+++++........ .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----------------------~~~~G~v~~~~l~~~~~~~~~~~~-~ 58 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED----------------------GKLVGLLTQRDLLRAALSSLSDNG-E 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC----------------------CCEEEEEEHHHHHHHhcccccccc-c
Confidence 45689999999999999999999999999864 589999999999887653211000 0
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
.........++.++|.. + +..+.+++++.+++++|. .+.+.+||+ ++. +..+|+||..
T Consensus 59 ---~~~~~~~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv-~~~------------~~~~Gvit~~ 117 (122)
T cd04803 59 ---ESLTKERDVPVAEVMKT---D--VLTVTPDTPLREAAEIMVENKIGCLPVV-DDK------------GTLVGIITRS 117 (122)
T ss_pred ---cccccccCcCHHHhhCC---C--CeEeCCCCcHHHHHHHHHHcCCCeEEEE-cCC------------CCEEEEEEHH
Confidence 00001123467888862 3 578999999999999998 688899995 322 2346999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
|+++|
T Consensus 118 dl~~~ 122 (122)
T cd04803 118 DFLRL 122 (122)
T ss_pred HhhcC
Confidence 99875
No 43
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.24 E-value=1.7e-10 Score=87.20 Aligned_cols=104 Identities=11% Similarity=0.065 Sum_probs=82.9
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.+|++.|.+++...+||++++ ++++|+++..|+++...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~----------------------g~~~Giv~~~dl~~~~~--------- 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD----------------------GQPLGFVTRREAARASG--------- 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC----------------------CCEEEEEeHHHHHHhcc---------
Confidence 45688999999999999999999999999864 68999999999875321
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
.++.++|.. . +..+.+++++.++++.|. ++...+||+ ++. +..+|+||+.
T Consensus 51 -----------~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~Vv-~~~------------~~~~Gvi~~~ 101 (106)
T cd04582 51 -----------GCCGDHAEP---F--KVTVSVDDDLRIVLSRMFAHDMSWLPCV-DED------------GRYVGEVTQR 101 (106)
T ss_pred -----------cchhhhccc---C--CEEECCCCCHHHHHHHHHHCCCCeeeEE-CCC------------CcEEEEEEHH
Confidence 136677752 2 467899999999999888 788889996 322 2346999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
|+++|
T Consensus 102 ~l~~~ 106 (106)
T cd04582 102 SIADY 106 (106)
T ss_pred HhhcC
Confidence 99874
No 44
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.24 E-value=8.9e-11 Score=112.39 Aligned_cols=126 Identities=18% Similarity=0.320 Sum_probs=98.7
Q ss_pred HHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEe
Q 046022 21 NQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLT 100 (262)
Q Consensus 21 ~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs 100 (262)
..++|..++++++|. ++++++++++|+.+|++.|.++++.++||+|.+ ++++|+|+
T Consensus 328 ~~~~l~~~~v~~im~--~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~----------------------~~~~Givt 383 (454)
T TIGR01137 328 VFDVLKNATVKDLHL--PAPVTVHPTETVGDAIEILREYGFDQLPVVTEA----------------------GKVLGSVT 383 (454)
T ss_pred HHHHhccCCHHHhCc--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC----------------------CeEEEEEE
Confidence 345689999999994 468899999999999999999999999999864 58999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccc
Q 046022 101 MLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENIS 180 (262)
Q Consensus 101 ~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~ 180 (262)
..|+++.+..... ....++.++|.. . +.++.+++++.+++..|.+. +.+|+.++
T Consensus 384 ~~dl~~~~~~~~~-------------~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~~~~~--~~~vV~~~------ 437 (454)
T TIGR01137 384 LRELLSALFAGKA-------------NPDDAVSKVMSK---K--FIQIGEGEKLSDLSKFLEKN--SSAIVTEE------ 437 (454)
T ss_pred HHHHHHHHhccCC-------------CcCCCHHHhcCC---C--CeEECCcCcHHHHHHHHHHC--CeeEEEEC------
Confidence 9999987764211 112368899862 3 57899999999999999852 33443332
Q ss_pred cceecccCCeeeEecHHHHHHHH
Q 046022 181 GVELVESASSYQMLTQMDLLRFM 203 (262)
Q Consensus 181 g~~~~~~~~~~giITqsDIir~L 203 (262)
++.+|+||++||+++|
T Consensus 438 -------g~liGvvt~~dll~~l 453 (454)
T TIGR01137 438 -------GKPIGVVTKIDLLSFL 453 (454)
T ss_pred -------CEEEEEEEHHHHHHhh
Confidence 2335999999999986
No 45
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.2e-10 Score=88.99 Aligned_cols=108 Identities=17% Similarity=0.256 Sum_probs=86.0
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.+|++.|.++++..+||+++. ++++|+++..|+..+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----------------------~~~~G~v~~~dl~~~~~~~~------ 53 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE----------------------EKLKGVVTFTDILDLDLFES------ 53 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC----------------------CCEEEEEehHHhHHHHhhcc------
Confidence 46789999999999999999999999999864 58999999999987654210
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
....++.++|.. . +.++.+++++.++++.|. ++.+++||+.+ + . .+|+||..
T Consensus 54 --------~~~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~--~-----------~~G~it~~ 106 (111)
T cd04626 54 --------FLEKKVFNIVSQ---D--VFYVNEEDTIDEALDIMREKQIGRLPVVDD-N--K-----------LIGVVRTK 106 (111)
T ss_pred --------cccCcHHHHhcC---C--cEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-C--E-----------EEEEEEhH
Confidence 113467888862 2 578999999999999998 68999999633 1 2 35999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 107 di~~ 110 (111)
T cd04626 107 DILD 110 (111)
T ss_pred Hhcc
Confidence 9874
No 46
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.23 E-value=2.1e-10 Score=87.42 Aligned_cols=108 Identities=19% Similarity=0.274 Sum_probs=85.3
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.++++..+||++.+. ++++|+++..|++........
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~---------------------~~~~G~v~~~~l~~~~~~~~~----- 55 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDL---------------------DNIIGVVHVKDLLRALAEGEE----- 55 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCC---------------------ceEEEEEEHHHHHHHHHcCCC-----
Confidence 467899999999999999999999999998641 589999999999887653210
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
..++.+++. . +.++.+++++.++++.|. .+.+++||+ ++. +..+|+||++
T Consensus 56 ----------~~~~~~~~~----~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~------------~~~~Gvit~~ 106 (111)
T cd04590 56 ----------DLDLRDLLR----P--PLFVPESTPLDDLLEEMRKERSHMAIVV-DEY------------GGTAGLVTLE 106 (111)
T ss_pred ----------cCCHHHHhc----C--CeecCCCCcHHHHHHHHHhcCCcEEEEE-ECC------------CCEEEEeEHH
Confidence 034566553 2 467999999999999998 689999995 322 2346999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
|+++
T Consensus 107 di~~ 110 (111)
T cd04590 107 DILE 110 (111)
T ss_pred Hhhc
Confidence 9975
No 47
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=3.2e-10 Score=86.57 Aligned_cols=109 Identities=25% Similarity=0.401 Sum_probs=87.1
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.+|++.|.++++..+||++.+ ++++|+++..|+++++....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----------------------~~~~G~v~~~~l~~~~~~~~------ 53 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD----------------------ERPIGIVTERDIVRAVAAGI------ 53 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC----------------------CCEEEEeeHHHHHHHHhccC------
Confidence 45688999999999999999999999999864 58999999999988776421
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
....++.++|.. + +.++.+++++.++++.|. ++...+||+ ++. +...|+||.+
T Consensus 54 --------~~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv-~~~------------g~~~Gilt~~ 107 (112)
T cd04624 54 --------DLDTPVSEIMTR---D--LVTVDPDEPVAEAAKLMRKNNIRHHLVV-DKG------------GELVGVISIR 107 (112)
T ss_pred --------CCccCHHHhccC---C--CEEECCCCcHHHHHHHHHHcCccEEEEE-cCC------------CcEEEEEEHH
Confidence 123467788862 3 578999999999999998 678889985 322 2335999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
|+++
T Consensus 108 dl~~ 111 (112)
T cd04624 108 DLVR 111 (112)
T ss_pred Hhcc
Confidence 9975
No 48
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=3.8e-10 Score=85.85 Aligned_cols=107 Identities=21% Similarity=0.342 Sum_probs=85.5
Q ss_pred CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022 38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS 117 (262)
Q Consensus 38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~ 117 (262)
++++++++++++.+|++.|.+++...+||++.. ++++|+++..|+++.+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~~l~~~~~~~~----- 54 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED----------------------GRLVGIVTSWDISKAVARDK----- 54 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCC----------------------CcEEEEEeHHHHHHHHhhCc-----
Confidence 356789999999999999999999999999864 68999999999987655311
Q ss_pred CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022 118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ 196 (262)
Q Consensus 118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq 196 (262)
.++.++|.. . +.++.+++++.++++.|. .+.+.+||+ +.+ +...|+||+
T Consensus 55 ------------~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~------------~~~~G~v~~ 104 (110)
T cd04605 55 ------------KSVEDIMTR---N--VITATPDEPIDVAARKMERHNISALPVV-DAE------------NRVIGIITS 104 (110)
T ss_pred ------------cCHHHhcCC---C--CeEECCCCcHHHHHHHHHHhCCCEEeEE-CCC------------CcEEEEEEH
Confidence 146777752 2 578999999999999988 688999995 322 234599999
Q ss_pred HHHHH
Q 046022 197 MDLLR 201 (262)
Q Consensus 197 sDIir 201 (262)
.||++
T Consensus 105 ~di~~ 109 (110)
T cd04605 105 EDISK 109 (110)
T ss_pred HHhhh
Confidence 99965
No 49
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.9e-10 Score=87.77 Aligned_cols=110 Identities=16% Similarity=0.246 Sum_probs=85.2
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
.+.++++++++.+|++.|.+++...+||.+. ++++|+++..|+..++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~~----- 53 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER-----------------------GELVGLLTFREVLQAMAQHGA----- 53 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC-----------------------CEEEEEEEHHHHHHHHHhcCC-----
Confidence 4678999999999999999888877777653 589999999999887753100
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
.....++.++|.. . +.++.+++++.++++.|. .+..++||+ +++ + .+|+||.+
T Consensus 54 -------~~~~~~v~~~~~~---~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vv-~~~--~-----------~~Gvvt~~ 107 (112)
T cd04625 54 -------GVLDTTVRAIMNP---E--PIVASPDDSIDEVRRLMVERHLRYLPVL-DGG--T-----------LLGVISFH 107 (112)
T ss_pred -------chhcCCHHHHhCC---C--CeEECCCCCHHHHHHHHHHcCCCeeeEE-ECC--E-----------EEEEEEHH
Confidence 0113468888862 2 478999999999999998 688999996 321 2 35999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
||+++
T Consensus 108 dl~~~ 112 (112)
T cd04625 108 DVAKA 112 (112)
T ss_pred HhhcC
Confidence 99874
No 50
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=2.8e-10 Score=86.71 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=86.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022 38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS 117 (262)
Q Consensus 38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~ 117 (262)
+++++++.+.++.+|.+.|.+++...+||++. ++++|+++..|+...+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~dl~~~~~~~------ 52 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVEG-----------------------GRVVGIISRRDVEKALRHG------ 52 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-----------------------CEEEEEEEHHHHHHHHhcc------
Confidence 46789999999999999999999999999986 3799999999988765321
Q ss_pred CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022 118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ 196 (262)
Q Consensus 118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq 196 (262)
....++.++|.. . +..+.+++++.+++++|. .+.+++||.. ++ ..+|+||+
T Consensus 53 ---------~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~-------------~~~Gvvt~ 104 (110)
T cd04595 53 ---------LGHAPVKDYMST---D--VVTVPPDTPLSEVQELMVEHDIGRVPVVE-DG-------------RLVGIVTR 104 (110)
T ss_pred ---------cccCcHHHHhcC---C--CEEECCCCcHHHHHHHHHHcCCCeeEEEe-CC-------------EEEEEEEh
Confidence 123468888862 3 578999999999999998 6889999953 21 23599999
Q ss_pred HHHHH
Q 046022 197 MDLLR 201 (262)
Q Consensus 197 sDIir 201 (262)
.|+++
T Consensus 105 ~di~~ 109 (110)
T cd04595 105 TDLLR 109 (110)
T ss_pred HHhhc
Confidence 99975
No 51
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.20 E-value=4.2e-10 Score=85.61 Aligned_cols=107 Identities=20% Similarity=0.379 Sum_probs=85.7
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.++++.++||++. ++++|+++..|+++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~~l~~~~~~~~------ 52 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-----------------------GKLVGIVTLSDIAHAIARGL------ 52 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEEHHHHHHHHhccc------
Confidence 5678999999999999999999999999985 38999999999988654311
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
...++.++|.. . +.++.+++++.++++.|. .+.+.+||. ++. ++..|+||..
T Consensus 53 ---------~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~G~i~~~ 105 (110)
T cd04588 53 ---------ELAKVKDVMTK---D--VITIDEDEQLYDAIRLMNKHNVGRLIVT-DDE------------GRPVGIITRT 105 (110)
T ss_pred ---------cccCHHHHhcC---C--ceEECCCCCHHHHHHHHHhcCCCEEEEE-CCC------------CCEEEEEEhH
Confidence 01467788752 2 578999999999999998 688899995 322 2346999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 106 dl~~ 109 (110)
T cd04588 106 DILR 109 (110)
T ss_pred Hhhc
Confidence 9975
No 52
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.20 E-value=4.4e-10 Score=85.11 Aligned_cols=105 Identities=16% Similarity=0.291 Sum_probs=84.6
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.+|++.|.++++..+||++.+ ++++|+++..|++.....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~----------------------~~~~G~v~~~dl~~~~~~-------- 52 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD----------------------NKLLGIVSLESLEQAYKE-------- 52 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC----------------------CcEEEEEEHHHHHHHhhc--------
Confidence 45688999999999999999999999999864 589999999998775422
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
..++.++|.. . +..+.+++++.++++.|. .+.+++||+ +++ ++.+|+||++
T Consensus 53 ----------~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~vv-~~~------------g~~~Gvit~~ 104 (109)
T cd04583 53 ----------AKSLEDIMLE---D--VFTVQPDASLRDVLGLVLKRGPKYVPVV-DED------------GKLVGLITRS 104 (109)
T ss_pred ----------CCcHhHhhcC---C--ceEECCCCcHHHHHHHHHHcCCceeeEE-CCC------------CeEEEEEehH
Confidence 1257778862 2 578999999999999998 588999996 322 2346999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
|+++
T Consensus 105 ~l~~ 108 (109)
T cd04583 105 SLVD 108 (109)
T ss_pred Hhhc
Confidence 9975
No 53
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.20 E-value=7e-11 Score=113.39 Aligned_cols=156 Identities=12% Similarity=0.165 Sum_probs=118.2
Q ss_pred hcceeccccccCCcEEEEcCCCCHHHHHHHHHh-----CCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEe
Q 046022 26 REAKVRDLTAEKRRIVEVPHTASLAHTMNALVA-----NKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLT 100 (262)
Q Consensus 26 ~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~-----~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs 100 (262)
.+.+++++|. +++++++++.|+.+|++.|.+ +++..+||+|++ ++++|+++
T Consensus 129 ~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~----------------------~~l~GvV~ 184 (449)
T TIGR00400 129 SDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES----------------------KHLKGVLS 184 (449)
T ss_pred CcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC----------------------CeEEEEEE
Confidence 5578999995 578999999999999999985 567788988864 68999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccc
Q 046022 101 MLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENI 179 (262)
Q Consensus 101 ~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~ 179 (262)
.+|++.. .+ ..+++++|.. . +.++.+++++.+|++.|. ++...+||+ |+.
T Consensus 185 l~dLl~a--~~-----------------~~~v~~im~~---~--~~~v~~~~~~~eal~~m~~~~~~~lpVV-D~~---- 235 (449)
T TIGR00400 185 IRDLILA--KP-----------------EEILSSIMRS---S--VFSIVGVNDQEEVARLIQKYDFLAVPVV-DNE---- 235 (449)
T ss_pred HHHHhcC--CC-----------------CCcHHHHhCC---C--CeeECCCCCHHHHHHHHHHcCCCEEeEE-cCC----
Confidence 9998642 10 1368999972 3 578999999999999998 678899996 432
Q ss_pred ccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEE
Q 046022 180 SGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPI 254 (262)
Q Consensus 180 ~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~V 254 (262)
++.+|+||..|+++.+.+... ++ +++...++..+++.+.+++..|.++++.-++|
T Consensus 236 --------g~lvGiIt~~Dil~~l~~~~~----------ed--~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v 290 (449)
T TIGR00400 236 --------GRLVGIVTVDDIIDVIQSEAT----------ED--FYMIAAVKPLDDSYFDTSILVMAKNRIIWLLV 290 (449)
T ss_pred --------CeEEEEEEHHHHHHHHHhhhH----------HH--HHHhcCCCCCcchhhhchHHHHHHhccchHHH
Confidence 234599999999999977532 22 23333444445677788888898888765443
No 54
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=2.1e-10 Score=90.21 Aligned_cols=114 Identities=20% Similarity=0.333 Sum_probs=83.5
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH-----HhCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH-----IAGDDQ 113 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~-----l~~~~~ 113 (262)
+.++++.++++.+|++.|.++++..+||++.. ++++|+++..|+... +.....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----------------------~~~~Giv~~~dl~~~~~~~~~~~~~~ 59 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD----------------------DNFIGVITAVDLLGEEPIKRIQEGGI 59 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC----------------------CcEEEEEEHHHHhhChhhHHHHHcCC
Confidence 35689999999999999999999999999864 589999999998852 221100
Q ss_pred CCCCCCCcchHHhhhccccccccccCCCCCeeEEe----CCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccC
Q 046022 114 MNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTL----SPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESA 188 (262)
Q Consensus 114 l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v----~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~ 188 (262)
.....+++++|.. ......+ .+++++.++++.|. ++.+++||+.++ . +
T Consensus 60 ------------~~~~~~v~~im~~---~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~-~-----------~ 112 (126)
T cd04640 60 ------------SRSELTVADVMTP---KEDLKALDLEELENASVGDVVETLKASGRQHALVVDRE-H-----------H 112 (126)
T ss_pred ------------CchheEHHHhcCc---hhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECC-C-----------C
Confidence 1123468889862 2111233 37899999999998 789999996332 1 1
Q ss_pred CeeeEecHHHHHH
Q 046022 189 SSYQMLTQMDLLR 201 (262)
Q Consensus 189 ~~~giITqsDIir 201 (262)
.++|+||++||++
T Consensus 113 ~~~G~it~~di~~ 125 (126)
T cd04640 113 QIRGIISTSDIAR 125 (126)
T ss_pred EEEEEEeHHHHhh
Confidence 3459999999976
No 55
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.19 E-value=4.1e-10 Score=85.81 Aligned_cols=108 Identities=19% Similarity=0.344 Sum_probs=85.9
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.+++.++++.+|.+.|.++++..+||++. ++++|+++..|+..++.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-----------------------~~~~G~v~~~~l~~~~~~~~~----- 53 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-----------------------GRLVGIVTDRDLRNRVVAEGL----- 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-----------------------CEEEEEEEhHHHHHHHhccCC-----
Confidence 5678999999999999999999999999985 489999999999876654211
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
....++.++|.. . +..+.++++|.++++.|. .+.+++||..+ + ..+|++|.+
T Consensus 54 --------~~~~~i~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-------------~~~Giit~~ 106 (111)
T cd04800 54 --------DPDTPVSEVMTA---P--PITIPPDATVFEALLLMLERGIHHLPVVDD-G-------------RLVGVISAT 106 (111)
T ss_pred --------CccCCHHHHhCC---C--CeEECCCCcHHHHHHHHHHcCCCeeeEeEC-C-------------EEEEEEEHH
Confidence 012367788862 3 578999999999999998 68899999533 1 235999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 107 di~~ 110 (111)
T cd04800 107 DLLR 110 (111)
T ss_pred Hhhc
Confidence 9985
No 56
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.18 E-value=1.1e-09 Score=106.21 Aligned_cols=127 Identities=16% Similarity=0.165 Sum_probs=97.1
Q ss_pred HHhhhcce-eccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEe
Q 046022 22 QRLLREAK-VRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLT 100 (262)
Q Consensus 22 ~~~l~~~~-v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs 100 (262)
.+.+...+ ..+.|.. +.+++++++|+.+|+++|.++++..+||++++. ..++++|+|+
T Consensus 89 ~~~v~kvk~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~-------------------~~gkLvGIVt 147 (495)
T PTZ00314 89 VEEVRKVKRFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGK-------------------VGGKLLGIVT 147 (495)
T ss_pred HHHHhhcccccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCc-------------------cCCeEEEEEE
Confidence 44555544 6677753 557999999999999999999999999998631 0168999999
Q ss_pred HHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccc
Q 046022 101 MLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENI 179 (262)
Q Consensus 101 ~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~ 179 (262)
..|+. +. .. ...+|+++|.. .++ ++++.+++++.+|+++|. ++++.+||+ +++
T Consensus 148 ~~DL~-~~-~~----------------~~~~V~diMt~-~~~--lvtv~~~~sl~eAl~lm~e~~i~~LPVV-d~~---- 201 (495)
T PTZ00314 148 SRDID-FV-KD----------------KSTPVSEVMTP-REK--LVVGNTPISLEEANEVLRESRKGKLPIV-NDN---- 201 (495)
T ss_pred HHHHh-hc-cc----------------CCCCHHHhhCC-cCC--ceEeCCCCCHHHHHHHHHHcCCCeEEEE-cCC----
Confidence 99975 21 11 13479999972 123 688999999999999998 799999996 432
Q ss_pred ccceecccCCeeeEecHHHHHHHH
Q 046022 180 SGVELVESASSYQMLTQMDLLRFM 203 (262)
Q Consensus 180 ~g~~~~~~~~~~giITqsDIir~L 203 (262)
+..+|+||++||++..
T Consensus 202 --------g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 202 --------GELVALVSRSDLKKNR 217 (495)
T ss_pred --------CcEEEEEEehHhhhcc
Confidence 2346999999999865
No 57
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.18 E-value=2.9e-10 Score=110.33 Aligned_cols=123 Identities=13% Similarity=0.136 Sum_probs=93.3
Q ss_pred eeccccccC-CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022 29 KVRDLTAEK-RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH 107 (262)
Q Consensus 29 ~v~dlm~~~-~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~ 107 (262)
+|+++|... ....++++++|+.+|++.|.++++..+||+|... ..++++|+||..|+...
T Consensus 95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~-------------------~~gkLvGIVT~~DLr~~ 155 (502)
T PRK07107 95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGT-------------------AHGKLLGIVTSRDYRIS 155 (502)
T ss_pred HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCC-------------------cCCEEEEEEEcHHhhcc
Confidence 366666421 1225899999999999999999999999998520 01699999999997421
Q ss_pred HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022 108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE 186 (262)
Q Consensus 108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~ 186 (262)
.. ....+|+++|+.. +. +.++.+++++.+|+++|. ++++++||+ +++
T Consensus 156 -~~----------------~~~~~V~dIMt~~-~~--~itv~~d~~l~eAl~lM~e~~i~~LPVV-D~~----------- 203 (502)
T PRK07107 156 -RM----------------SLDTKVKDFMTPF-EK--LVTANEGTTLKEANDIIWDHKLNTLPIV-DKN----------- 203 (502)
T ss_pred -cc----------------CCCCCHHHHhCCC-CC--eEEECCCCcHHHHHHHHHHcCCCEEEEE-cCC-----------
Confidence 10 1245799999731 23 688999999999999998 799999996 432
Q ss_pred cCCeeeEecHHHHHHHH
Q 046022 187 SASSYQMLTQMDLLRFM 203 (262)
Q Consensus 187 ~~~~~giITqsDIir~L 203 (262)
+.++|+||..||++..
T Consensus 204 -g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 204 -GNLVYLVFRKDYDSHK 219 (502)
T ss_pred -CeEEEEEEhHHHHhcc
Confidence 2345999999999864
No 58
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.18 E-value=3.3e-10 Score=86.27 Aligned_cols=104 Identities=15% Similarity=0.234 Sum_probs=84.3
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.+|++.|.+++...+||++.+ ++++|+++..|+.....
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~~l~~~~~--------- 51 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK----------------------NKVVGIVTSKDVAGKDP--------- 51 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC----------------------CeEEEEecHHHHhcccc---------
Confidence 46789999999999999999999999999864 68999999999864210
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
..+++++|.. . +.++.+++++.++++.|. .+.+.+||+ ++. +..+|+||..
T Consensus 52 ----------~~~v~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~------------~~~~G~it~~ 103 (108)
T cd04596 52 ----------DTTIEKVMTK---N--PITVNPKTSVASVAHMMIWEGIEMLPVV-DDN------------KKLLGIISRQ 103 (108)
T ss_pred ----------cccHHHHhcC---C--CeEECCCCCHHHHHHHHHHcCCCeeeEE-cCC------------CCEEEEEEHH
Confidence 2368888862 2 578999999999999988 788999995 322 2345999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
|+++
T Consensus 104 di~~ 107 (108)
T cd04596 104 DVLK 107 (108)
T ss_pred Hhhc
Confidence 9986
No 59
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=6.6e-10 Score=85.33 Aligned_cols=109 Identities=17% Similarity=0.265 Sum_probs=82.3
Q ss_pred cEEEEcCCCCHHHHHHHHHhCC-CceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANK-VVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS 117 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~-i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~ 117 (262)
+.++++++.|+.+|++.|.+++ ...+||.+. ++++|+++..|++..+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~~~--- 55 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK-----------------------GRLLGIFTERDIVRLTAIGKDL--- 55 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC-----------------------CcEEEEEeHHHHHHHHhcCCCc---
Confidence 3467899999999999999888 667777763 5899999999998766532110
Q ss_pred CCCcchHHhhhccccccccccCCCCCeeEEeCCC--CCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEe
Q 046022 118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPN--TSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQML 194 (262)
Q Consensus 118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~--~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giI 194 (262)
...++.++|.. . +.++.++ +++.++++.|. ++.+++||+ ++. +..+|+|
T Consensus 56 ----------~~~~i~~~~~~---~--~~~v~~~~~~~l~~a~~~~~~~~~~~~pVv-d~~------------~~~~Gvi 107 (115)
T cd04620 56 ----------SDLPIGEVMTQ---P--VVTLQESEIQDIFTALSLFRQHQIRHLPVL-DDQ------------GQLIGLV 107 (115)
T ss_pred ----------cccCHHHhcCC---C--cEEEecccccCHHHHHHHHHHhCCceEEEE-cCC------------CCEEEEE
Confidence 12367788862 2 4667776 79999999998 688999996 432 2345999
Q ss_pred cHHHHHH
Q 046022 195 TQMDLLR 201 (262)
Q Consensus 195 TqsDIir 201 (262)
|++||+|
T Consensus 108 t~~dl~~ 114 (115)
T cd04620 108 TAESIRQ 114 (115)
T ss_pred EhHHhhc
Confidence 9999986
No 60
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=5.6e-10 Score=85.34 Aligned_cols=109 Identities=23% Similarity=0.310 Sum_probs=85.8
Q ss_pred EEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCCC
Q 046022 40 IVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDD 119 (262)
Q Consensus 40 lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~ 119 (262)
..++.+++++.+|++.|.+++...+||++.+ ++++|+++..|+.+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~----------------------~~~~G~v~~~dl~~~~~~~~~------ 54 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK----------------------KRLVGIITRYDVLSYALESEE------ 54 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC----------------------CCEEEEEEHHHHHHhhhhhhh------
Confidence 4578999999999999999999999999864 589999999999875543211
Q ss_pred CcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHH
Q 046022 120 APDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMD 198 (262)
Q Consensus 120 ~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsD 198 (262)
....++.++|.. . +.++.+++++.++++.|. .+.+++||+ ++. ++.+|+||..|
T Consensus 55 -------~~~~~i~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-d~~------------g~~~Gvvt~~d 109 (113)
T cd04615 55 -------LKDAKVREVMNS---P--VITIDANDSIAKARWLMSNNNISRLPVL-DDK------------GKVGGIVTEDD 109 (113)
T ss_pred -------hcCCcHHHhccC---C--ceEECCCCcHHHHHHHHHHcCCCeeeEE-CCC------------CeEEEEEEHHH
Confidence 123467888862 2 578999999999999998 688899996 322 23459999999
Q ss_pred HHH
Q 046022 199 LLR 201 (262)
Q Consensus 199 Iir 201 (262)
|++
T Consensus 110 l~~ 112 (113)
T cd04615 110 ILR 112 (113)
T ss_pred hhc
Confidence 975
No 61
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.16 E-value=8.2e-10 Score=84.29 Aligned_cols=109 Identities=19% Similarity=0.369 Sum_probs=86.0
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.+++...+||+++ ++++|+++..|++.++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~~~---- 54 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-----------------------EKPVGIITERDLVKKVVSRNLK---- 54 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-----------------------CEEEEEEEHHHHHHHHhhccCC----
Confidence 5678999999999999999999999999984 4899999999999877532100
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
....++.++|.. . +..+.+++++.++++.|. .+.+.+||+.+ + ++ .|+||+.
T Consensus 55 --------~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~--~~-----------~Gvi~~~ 107 (112)
T cd04802 55 --------PREVPVGEVMST---P--LITIDPNASLNEAAKLMAKHGIKRLPVVDD-D--EL-----------VGIVTTT 107 (112)
T ss_pred --------cccCCHHHhcCC---C--cEEECCCCCHHHHHHHHHHcCCCeeEEeeC-C--EE-----------EEEEEhh
Confidence 112367788852 3 577999999999999998 68889999632 2 23 4999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 108 di~~ 111 (112)
T cd04802 108 DIVM 111 (112)
T ss_pred hhhc
Confidence 9975
No 62
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.16 E-value=4.6e-10 Score=84.98 Aligned_cols=109 Identities=23% Similarity=0.401 Sum_probs=84.2
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.++++..+||++. ++++|+++..|+.+.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----------------------~~~~G~v~~~dl~~~~~~~~~----- 53 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-----------------------GRVVGSIDESDLLDALIEGKA----- 53 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-----------------------CeeEEEEeHHHHHHHHhcccc-----
Confidence 4678999999999999999999999999985 379999999999987764211
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceecccCCeeeEecHHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMD 198 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsD 198 (262)
....++.++|.. . +.++.+++++.+++++|.+ .+.+||+ ++. +...|+||++|
T Consensus 54 --------~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~-~~~~~vv-~~~------------~~~~Gvvt~~d 106 (110)
T cd04609 54 --------KFSLPVREVMGE---P--LPTVDPDAPIEELSELLDR-GNVAVVV-DEG------------GKFVGIITRAD 106 (110)
T ss_pred --------ccCcCHHHHhcC---C--CceeCCCCcHHHHHHHHHh-CCceeEE-ecC------------CeEEEEEeHHH
Confidence 012467788862 2 4779999999999999986 3446664 322 23459999999
Q ss_pred HHHH
Q 046022 199 LLRF 202 (262)
Q Consensus 199 Iir~ 202 (262)
|++|
T Consensus 107 i~~~ 110 (110)
T cd04609 107 LLKY 110 (110)
T ss_pred hhcC
Confidence 9986
No 63
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=5.3e-10 Score=86.62 Aligned_cols=119 Identities=18% Similarity=0.308 Sum_probs=87.3
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.+++..++||++.. ++++|+++..|++..........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~~l~~~~~~~~~~~--- 56 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA----------------------GELIGIITRRDIIRAGSVRTSVE--- 56 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC----------------------CcEEEEEEcHHHHhhcccccccc---
Confidence 56789999999999999999999999999864 68999999999887532110000
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
...........++.++|.. . +.++.+++++.++++.|. .+.+++||+.+ . +..+|++|+.
T Consensus 57 -~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~------------g~~~Gvit~~ 117 (122)
T cd04635 57 -DQQRTQTKASPTVEKIMST---P--VYSVTPDDSIATAVELMLEHDIGRLPVVNE-K------------DQLVGIVDRH 117 (122)
T ss_pred -chhhhhhhccCcHHHHhcC---C--CeeECCCCCHHHHHHHHHHcCCCeeeEEcC-C------------CcEEEEEEhH
Confidence 0000001124467888852 2 578999999999999998 68999999633 2 2346999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 118 dl~~ 121 (122)
T cd04635 118 DVLK 121 (122)
T ss_pred Hhhc
Confidence 9986
No 64
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.15 E-value=6.4e-10 Score=84.88 Aligned_cols=111 Identities=18% Similarity=0.258 Sum_probs=87.4
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.++++.|.+.+...+||++.+ ++++|+++..|+...+.....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~----------------------~~~~G~v~~~~i~~~~~~~~~~---- 56 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED----------------------GRLVGIFTDGDLRRALEKGLDI---- 56 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC----------------------CCEEEEechHHHHHHHhccCcc----
Confidence 34578999999999999998899999999864 5899999999998877642211
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
...++.++|.. . +.++.+++++.++++.|. .+.+++||+ +++ +..+|+||..
T Consensus 57 ---------~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv-~~~------------~~~iG~it~~ 109 (114)
T cd04604 57 ---------LTLPVADVMTR---N--PKTIDPDALAAEALELMEENKITALPVV-DDN------------GRPVGVLHIH 109 (114)
T ss_pred ---------ccCCHHHhhcc---C--CeEECCCCcHHHHHHHHHHcCCCEEEEE-CCC------------CCEEEEEEHH
Confidence 12368888862 2 467999999999999998 688999996 322 2345999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
||+++
T Consensus 110 di~~~ 114 (114)
T cd04604 110 DLLRA 114 (114)
T ss_pred HhhcC
Confidence 99864
No 65
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.15 E-value=8.8e-10 Score=83.70 Aligned_cols=108 Identities=26% Similarity=0.453 Sum_probs=85.9
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.+|++.|.+++...+||++. ++++|+++..|+.++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----------------------~~~~G~v~~~~l~~~~~~~~~----- 53 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-----------------------GRPLGIVTERDILRLLASGPD----- 53 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEeHHHHHHHHhcCCC-----
Confidence 4568899999999999999999999999975 489999999999887754210
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
...+++++|.. . +.++.+++++.++++.|. .+.+.+||+ ++. +...|+||++
T Consensus 54 ---------~~~~v~~~~~~---~--~~~~~~~~~l~~~l~~~~~~~~~~~~Vv-~~~------------~~~~Gvi~~~ 106 (111)
T cd04611 54 ---------LQTPVGEVMSS---P--LLTVPADTSLYDARQLMREHGIRHLVVV-DDD------------GELLGLLSQT 106 (111)
T ss_pred ---------CCcCHHHhcCC---C--ceEECCCCCHHHHHHHHHHcCCeEEEEE-CCC------------CcEEEEEEhH
Confidence 23468888862 2 578999999999999998 688889995 322 2335999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 107 di~~ 110 (111)
T cd04611 107 DLLQ 110 (111)
T ss_pred Hhhc
Confidence 9975
No 66
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.15 E-value=8.5e-10 Score=84.57 Aligned_cols=109 Identities=25% Similarity=0.393 Sum_probs=88.8
Q ss_pred CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022 38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS 117 (262)
Q Consensus 38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~ 117 (262)
+.++++.++.++.+|+..|.++++.++||.+. .+++|+++..|+++++......
T Consensus 7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-----------------------~~l~Giit~~di~~~~~~~~~~--- 60 (117)
T COG0517 7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD-----------------------GKLVGIITERDILRALAAGGKR--- 60 (117)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEEHHHHHHHHhccCCc---
Confidence 57789999999999999999999999999874 3799999999999998863211
Q ss_pred CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhc--CCCeeEeecCCCCcccccceecccCCeeeEec
Q 046022 118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSK--GIHRALVPMDSRMENISGVELVESASSYQMLT 195 (262)
Q Consensus 118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~--g~~rv~V~~~~~~~~~~g~~~~~~~~~~giIT 195 (262)
..++.++|.. + +.++.+++++.++++.|.+ +++++||..++. ++.+|++|
T Consensus 61 -----------~~~v~~v~~~---~--~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~------------~~lvGivt 112 (117)
T COG0517 61 -----------LLPVKEVMTK---P--VVTVDPDTPLEEALELMVERHKIRRLPVVDDDG------------GKLVGIIT 112 (117)
T ss_pred -----------cccHHHhccC---C--cEEECCCCCHHHHHHHHHHHcCcCeEEEEECCC------------CeEEEEEE
Confidence 0168889973 2 6889999999999999984 799999964321 13459999
Q ss_pred HHHHH
Q 046022 196 QMDLL 200 (262)
Q Consensus 196 qsDIi 200 (262)
.+|++
T Consensus 113 ~~di~ 117 (117)
T COG0517 113 LSDIL 117 (117)
T ss_pred HHHcC
Confidence 99974
No 67
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=4.9e-10 Score=86.68 Aligned_cols=119 Identities=21% Similarity=0.343 Sum_probs=87.7
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.++++..+||++. ++++|+++..|+...+.....- ..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-----------------------~~~~G~v~~~~l~~~~~~~~~~--~~ 56 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-----------------------GKLVGIVTEKDIADALRSFRPL--VR 56 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-----------------------CEEEEEEchHHHHHhhhhhhhc--cc
Confidence 4568999999999999999999999999985 4899999999998765531100 00
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
. ..........++.++|.. + +.++.+++++.+++++|. .+.+++||+.+ + + .+|+||+.
T Consensus 57 ~-~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~--~-----------~~Gvi~~~ 116 (121)
T cd04633 57 D-RHQERRIRNLPVSDIMTR---P--VITIEPDTSVSDVASLMLENNIGGLPVVDD-G--K-----------LVGIVTRT 116 (121)
T ss_pred c-hhhhhhhhccCHHHHccC---C--ceEECCCCcHHHHHHHHHHcCCCcccEEEC-C--E-----------EEEEEEHH
Confidence 0 000001123467788862 3 578999999999999998 68899999633 1 2 35999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
|+++|
T Consensus 117 dl~~~ 121 (121)
T cd04633 117 DILRY 121 (121)
T ss_pred HhhcC
Confidence 99875
No 68
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=8.4e-10 Score=85.63 Aligned_cols=120 Identities=20% Similarity=0.270 Sum_probs=88.6
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.++++..+||++. ++++|+++..|+.+.+....... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~~l~~~~~~~~~~~--~ 56 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-----------------------NELVGVISDRDYLKAISPFLGTA--G 56 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-----------------------CeEEEEEEHHHHHHHHHHHhccc--c
Confidence 4678999999999999999999999999985 48999999999988654210000 0
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
....+. .....++.++|.. . +..+.+++++.++++.|. ++.+++||+ +++ +..+|++|..
T Consensus 57 ~~~~~~-~~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~vv-~~~------------~~~~Gvit~~ 117 (122)
T cd04637 57 ETEKDL-ATLNRRAHQIMTR---D--PITVSPDTPVDEASKLLLENSISCLPVV-DEN------------GQLIGIITWK 117 (122)
T ss_pred chHHHH-HHHHhHHHHhhcC---C--CeeeCCCCcHHHHHHHHHHcCCCeEeEE-CCC------------CCEEEEEEHH
Confidence 000010 1223468888862 3 578999999999999998 688899995 322 2346999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
|+++|
T Consensus 118 dll~~ 122 (122)
T cd04637 118 DLLKY 122 (122)
T ss_pred HhhhC
Confidence 99986
No 69
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.14 E-value=3.9e-10 Score=85.58 Aligned_cols=81 Identities=19% Similarity=0.309 Sum_probs=68.6
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++++++++.+|+++|. ++++.+||..+++ +..+|+||..|+++.+.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~------------~~~~Givt~~Dl~~~~~------------------- 51 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRK------------QQFVGMLTITDFILILR------------------- 51 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeCCC------------CEEEEEEEHHHHhhhee-------------------
Confidence 688999999999999988 6889999963221 23469999999987432
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCC-CC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS-GA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~-g~ 260 (262)
++++++++++.+|+++|.++++..+||+|++ |.
T Consensus 52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~ 85 (98)
T cd04618 52 ----LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGT 85 (98)
T ss_pred ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCC
Confidence 7899999999999999999999999999987 53
No 70
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.14 E-value=1.1e-09 Score=84.32 Aligned_cols=110 Identities=13% Similarity=0.167 Sum_probs=81.6
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.++++..+||+|..+ ..++++|+++..|++.. ..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~-------------------~~~~~~G~v~~~dl~~~-~~-------- 54 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGK-------------------SGGKLLGIVTSRDIDFL-TD-------- 54 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCC-------------------cCCEEEEEEEhHHhhhh-hc--------
Confidence 456889999999999999999999999998620 01689999999997632 11
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
...++.++|.. ....+...+++++.++++.|. ++.+++||+ ++. +..+|+||++
T Consensus 55 ---------~~~~v~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv-~~~------------~~~~Gvit~~ 109 (114)
T cd04602 55 ---------SETPLSEVMTP---REVLVVAPTGITLEEANEILRESKKGKLPIV-NDD------------GELVALVTRS 109 (114)
T ss_pred ---------cCCCHHHhcCC---CceEEECCCCCCHHHHHHHHHhcCCCceeEE-CCC------------CeEEEEEEHH
Confidence 01357888862 211233455999999999998 788999996 322 2346999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 110 di~~ 113 (114)
T cd04602 110 DLKK 113 (114)
T ss_pred Hhhc
Confidence 9875
No 71
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.14 E-value=1e-09 Score=83.36 Aligned_cols=109 Identities=21% Similarity=0.332 Sum_probs=85.4
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.++++..+||++. ++++|+++..|+.+...... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~v~~~dl~~~~~~~~-~---- 53 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-----------------------GRLVGIVTLADIRRVPAEGR-E---- 53 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-----------------------CeEEEEEEHHHHHHHHhcCc-c----
Confidence 5678999999999999999999999999985 37999999999887554311 0
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
...++.++|.. + +.++.+++++.++++.|. .+.+++||. ++. +...|+||..
T Consensus 54 ---------~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~G~it~~ 106 (111)
T cd04612 54 ---------ATVLVGDVMTR---D--PVTASPDETLRDALKRMAERDIGRLPVV-DDS------------GRLVGIVSRS 106 (111)
T ss_pred ---------cccCHHHhccC---C--CeEECCCCCHHHHHHHHHhCCCCeeeEE-cCC------------CCEEEEEEHH
Confidence 00256677752 3 578999999999999998 688899996 322 2345999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
||+++
T Consensus 107 di~~~ 111 (111)
T cd04612 107 DLLRA 111 (111)
T ss_pred HhhhC
Confidence 99874
No 72
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=6.4e-10 Score=86.81 Aligned_cols=104 Identities=22% Similarity=0.426 Sum_probs=77.7
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccc---hhhhccccch
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASEL---KDITSHSIRE 220 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l---~~l~~~ti~e 220 (262)
+.++.+++++.+|++.|. ++++++||. +++. ++..|+||+.|+++++..+.... .......+..
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~-d~~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 70 (123)
T cd04627 3 FIPVPSTASLFQAIEILGSGGIHRVAVT-EEES-----------GEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRD 70 (123)
T ss_pred ceecCCCCCHHHHHHHHhhCCcceEEEE-eCCC-----------CcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhh
Confidence 578999999999999998 578899995 3321 23359999999999876542211 1100011222
Q ss_pred hcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 221 LGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 221 L~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
..++.+++.++++++++.+|+++|.+++++.+||+|++|.
T Consensus 71 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~ 110 (123)
T cd04627 71 LTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGN 110 (123)
T ss_pred cccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCc
Confidence 2357788999999999999999999999999999998764
No 73
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.13 E-value=7.4e-10 Score=83.43 Aligned_cols=102 Identities=18% Similarity=0.283 Sum_probs=81.9
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.+|++.|.+++...+||++. ++++|+++..|++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~Giv~~~~l~~~~~--------- 49 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED-----------------------GKLVGIITSRDVRRAHP--------- 49 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC-----------------------CEEEEEEehHHhhcccc---------
Confidence 4568999999999999999999999999973 58999999999875321
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
..++.++|.. . +.++.+++++.++++.|. ++..++||+.+ + ..+|+||+.
T Consensus 50 ----------~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-------------~~~G~it~~ 100 (105)
T cd04599 50 ----------NRLVADAMTR---E--VVTISPEASLLEAKRLMEEKKIERLPVLRE-R-------------KLVGIITKG 100 (105)
T ss_pred ----------cCCHHHHccC---C--CEEECCCCCHHHHHHHHHHcCCCEeeEEEC-C-------------EEEEEEEHH
Confidence 1257778752 2 578999999999999988 78889999633 1 235999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 101 ~l~~ 104 (105)
T cd04599 101 TIAL 104 (105)
T ss_pred Hhcc
Confidence 9873
No 74
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.12 E-value=2.9e-09 Score=103.52 Aligned_cols=115 Identities=11% Similarity=0.107 Sum_probs=91.2
Q ss_pred CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022 38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS 117 (262)
Q Consensus 38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~ 117 (262)
++++++++++|+.+|++.|.++++..+||+|... ..++++|+|+..|+.. ..
T Consensus 108 ~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~-------------------~~GklvGIVT~~DL~~-v~-------- 159 (505)
T PLN02274 108 SDPVVKSPSSTISSLDELKASRGFSSVCVTETGT-------------------MGSKLLGYVTKRDWDF-VN-------- 159 (505)
T ss_pred CCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC-------------------cCCeEEEEEEHHHHhh-cc--------
Confidence 4678999999999999999999999999998631 0168999999999742 21
Q ss_pred CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022 118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ 196 (262)
Q Consensus 118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq 196 (262)
....+|.++|.. ... ++++.+++++.+|+++|. .+++++||+ +++ ++++|+||+
T Consensus 160 ---------~~~~~V~eIMt~-~~~--lvtv~~~~sL~eAl~~m~~~~~~~LPVV-D~~------------g~LvGvITr 214 (505)
T PLN02274 160 ---------DRETKLSEVMTS-DDD--LVTAPAGIDLEEAEAVLKDSKKGKLPLV-NED------------GELVDLVTR 214 (505)
T ss_pred ---------ccCCcHHHHhcc-CCC--cEEECCCCCHHHHHHHHHHcCCCEEEEE-cCC------------CeEEEEEEH
Confidence 113579999973 222 578999999999999998 799999996 322 234599999
Q ss_pred HHHHHHHHh
Q 046022 197 MDLLRFMMN 205 (262)
Q Consensus 197 sDIir~L~~ 205 (262)
+||++++..
T Consensus 215 ~DIlk~~~~ 223 (505)
T PLN02274 215 TDVKRVKGY 223 (505)
T ss_pred HHHHHHhhC
Confidence 999998864
No 75
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.12 E-value=1.5e-09 Score=83.53 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=87.8
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.+|++.|.+++...+||++. ++++|+++..|++.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~i~~~~l~~~~~~~~~~---- 54 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-----------------------GKLVGIVTDRDLKLASPSKATT---- 54 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-----------------------CeEEEEEeHHHHHHhhhccccc----
Confidence 4568999999999999999999999999985 4899999999998876431100
Q ss_pred CCcchHHh-hhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022 119 DAPDDLDK-KMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ 196 (262)
Q Consensus 119 ~~~~~~~~-~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq 196 (262)
....+... .-..++.++|.. + +.++.+++++.+++..|. .+.+++||. ++. +..+|+||+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~------------~~~~Gvvt~ 116 (122)
T cd04585 55 LDIWELYYLLSKIKVSDIMTR---D--PITVSPDASVEEAAELMLERKISGLPVV-DDQ------------GRLVGIITE 116 (122)
T ss_pred ccchhhhhhhcccCHHHhccC---C--CeEeCCCCcHHHHHHHHHHcCCCceeEE-CCC------------CcEEEEEEH
Confidence 00001100 113467788862 3 578999999999999998 688889995 322 234699999
Q ss_pred HHHHHH
Q 046022 197 MDLLRF 202 (262)
Q Consensus 197 sDIir~ 202 (262)
.||+++
T Consensus 117 ~di~~~ 122 (122)
T cd04585 117 SDLFRA 122 (122)
T ss_pred HHhhhC
Confidence 999874
No 76
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.10 E-value=2e-09 Score=82.05 Aligned_cols=110 Identities=18% Similarity=0.330 Sum_probs=84.7
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.+++...+||++. ++++|+++..|++........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----------------------~~~~G~i~~~~l~~~~~~~~~----- 53 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-----------------------DRLVGIVTDRDIVVRAVAEGR----- 53 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-----------------------CEEEEEEEhHHHHHHHhhccC-----
Confidence 5678999999999999999999999999985 489999999998744332110
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
. ....++.++|.. . +.++.+++++.++++.|. .+.+++||. ++. +..+|+||+.
T Consensus 54 ----~---~~~~~~~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~G~it~~ 108 (113)
T cd04622 54 ----D---PDTTTVGDVMTR---G--VVTVTEDDDVDEAARLMREHQVRRLPVV-DDD------------GRLVGIVSLG 108 (113)
T ss_pred ----C---cccCCHHHhccC---C--ccEECCCCCHHHHHHHHHHcCCCeeeEE-CCC------------CcEEEEEEHH
Confidence 0 011248888862 3 577999999999999998 688999995 322 2346999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
|+++
T Consensus 109 di~~ 112 (113)
T cd04622 109 DLAR 112 (113)
T ss_pred Hhhc
Confidence 9975
No 77
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.09 E-value=2.6e-09 Score=81.50 Aligned_cols=110 Identities=15% Similarity=0.191 Sum_probs=85.2
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++++++++.+|++.|.+++...+||++. ++++|+++..|++..+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----------------------~~~~G~v~~~dl~~~~~~~~~~---- 54 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-----------------------NKLVGIFTSKDIALRVVAQGLD---- 54 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-----------------------CEEEEEEEhHHHHHHHHhcCCC----
Confidence 4568899999999999999999999999985 4899999999998766532100
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
....++.++|.. . +.++.+++++.++++.|. .+.+++||+.+ . +..+|+||..
T Consensus 55 --------~~~~~v~~i~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~------------~~~~Gvvs~~ 108 (113)
T cd04587 55 --------PESTLVERVMTP---N--PVCATSDTPVLEALHLMVQGKFRHLPVVDK-S------------GQVVGLLDVT 108 (113)
T ss_pred --------cCcCCHHHhcCC---C--CeEEcCCCCHHHHHHHHHHcCCCcccEECC-C------------CCEEEEEEHH
Confidence 012468888862 2 468999999999999998 68889999533 2 2335999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||+.
T Consensus 109 dl~~ 112 (113)
T cd04587 109 KLTH 112 (113)
T ss_pred Hhcc
Confidence 9864
No 78
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.09 E-value=1.7e-09 Score=82.05 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=79.4
Q ss_pred EEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCCCC
Q 046022 41 VEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDA 120 (262)
Q Consensus 41 v~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~~ 120 (262)
+++++++++.+|++.|.++++..+||++. ++++|+++..|+.+...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----------------------~~~~G~v~~~~l~~~~~----------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-----------------------NKFLGAVYLKDIENATY----------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-----------------------CEEEEEEEHHHHhhhcc-----------
Confidence 47899999999999999999999999985 38999999999875311
Q ss_pred cchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHH
Q 046022 121 PDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDL 199 (262)
Q Consensus 121 ~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDI 199 (262)
.++.++|.. . ..++.+++++.++++.|. ++.+++||+ +++ ..+|+||+.||
T Consensus 50 ---------~~~~~~~~~---~--~~~v~~~~~l~~a~~~~~~~~~~~~~Vv-~~~-------------~~iGvit~~dl 101 (104)
T cd04594 50 ---------GDVVDYIVR---G--IPYVRLTSTAEEAWEVMMKNKTRWCPVV-DDG-------------KFKGIVTLDSI 101 (104)
T ss_pred ---------cchhhhhhc---C--CcEEcCCCCHHHHHHHHHHcCcceEEEE-ECC-------------EEEEEEEHHHh
Confidence 146667752 2 467999999999999998 688889996 321 23599999998
Q ss_pred HH
Q 046022 200 LR 201 (262)
Q Consensus 200 ir 201 (262)
++
T Consensus 102 ~~ 103 (104)
T cd04594 102 LD 103 (104)
T ss_pred hc
Confidence 75
No 79
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.08 E-value=3.9e-09 Score=101.40 Aligned_cols=120 Identities=16% Similarity=0.260 Sum_probs=94.2
Q ss_pred eeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHH
Q 046022 29 KVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHI 108 (262)
Q Consensus 29 ~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l 108 (262)
+.+++|. ++++++++++|+.+|++.|.++++.++||++.+. . .++++|+|+..|++...
T Consensus 81 ~~~~~~~--~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~---------------~----~~~lvGIVt~rDL~~~~ 139 (450)
T TIGR01302 81 RAENGII--SDPVTISPETTVADVLELMERKGISGIPVVEDGD---------------M----TGKLVGIITKRDIRFVK 139 (450)
T ss_pred cccCcee--cCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCC---------------C----CCeEEEEEEHHHHhhhh
Confidence 4677774 4678999999999999999999999999998641 0 04899999999986321
Q ss_pred hCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceeccc
Q 046022 109 AGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVES 187 (262)
Q Consensus 109 ~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~ 187 (262)
. ...++.++|.. .+ ++++.+++++.++++.|. ++.+++||+ ++.
T Consensus 140 -~-----------------~~~~V~dvm~~--~~--~~~V~~~~sl~eal~~m~~~~~~~lpVV-De~------------ 184 (450)
T TIGR01302 140 -D-----------------KGKPVSEVMTR--EE--VITVPEGIDLEEALKVLHEHRIEKLPVV-DKN------------ 184 (450)
T ss_pred -c-----------------CCCCHHHhhCC--CC--CEEECCCCcHHHHHHHHHHcCCCeEEEE-cCC------------
Confidence 1 12478899862 13 688999999999999998 789999996 432
Q ss_pred CCeeeEecHHHHHHHHH
Q 046022 188 ASSYQMLTQMDLLRFMM 204 (262)
Q Consensus 188 ~~~~giITqsDIir~L~ 204 (262)
+...|+||..||++.+.
T Consensus 185 G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 185 GELVGLITMKDIVKRRK 201 (450)
T ss_pred CcEEEEEEhHHhhhccc
Confidence 23459999999999763
No 80
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.07 E-value=1.4e-09 Score=82.51 Aligned_cols=105 Identities=18% Similarity=0.292 Sum_probs=81.0
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+.++++.++++.+|++.|.+++..++||++.. ++++|+++..|+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~~l~~~~~--------- 51 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD----------------------GKLVGIVTNRDLRFETD--------- 51 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC----------------------CEEEEEEEhhHeeeccc---------
Confidence 45688999999999999999999999999864 68999999999753210
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCC-CCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSP-NTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ 196 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~-~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq 196 (262)
...++.++|.. . +..+.+ ++++.++++.|. .+.+++||+ ++. +..+|+||+
T Consensus 52 ---------~~~~v~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv-~~~------------~~~~Gvi~~ 104 (110)
T cd04601 52 ---------LDKPVSEVMTP---E--NLLTTVEGTSLEEALELLHEHKIEKLPVV-DDE------------GKLKGLITV 104 (110)
T ss_pred ---------CCCCHHHhccc---C--ceEEecCCCCHHHHHHHHHHhCCCeeeEE-cCC------------CCEEEEEEh
Confidence 12367888852 2 244555 999999999998 688889995 322 234699999
Q ss_pred HHHHH
Q 046022 197 MDLLR 201 (262)
Q Consensus 197 sDIir 201 (262)
+|+++
T Consensus 105 ~dil~ 109 (110)
T cd04601 105 KDIEK 109 (110)
T ss_pred hhhhc
Confidence 99986
No 81
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.07 E-value=1.6e-09 Score=82.55 Aligned_cols=102 Identities=18% Similarity=0.288 Sum_probs=79.6
Q ss_pred EcCCCCHHHHHHHHHhCC-----CceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022 43 VPHTASLAHTMNALVANK-----VVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS 117 (262)
Q Consensus 43 v~~~~tv~eA~~~L~~~~-----i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~ 117 (262)
+++++|+.+|++.|.+++ +..+||++++ ++++|+++..|++.. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~----------------------~~~~G~v~~~~l~~~---~------ 50 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE----------------------GRLLGVVSLRDLLLA---D------ 50 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC----------------------CCEEEEEEHHHHhcC---C------
Confidence 568899999999999877 5789999864 589999999998641 0
Q ss_pred CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022 118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ 196 (262)
Q Consensus 118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq 196 (262)
...+++++|.. + +..+.+++++.++++.|. .+.+.+||+ ++. ++.+|+||.
T Consensus 51 ----------~~~~v~~~~~~---~--~~~i~~~~~~~~~~~~~~~~~~~~~~Vv-~~~------------~~~~Gvit~ 102 (109)
T cd04606 51 ----------PDTPVSDIMDT---D--VISVSADDDQEEVARLFEKYDLLALPVV-DEE------------GRLVGIITV 102 (109)
T ss_pred ----------CcchHHHHhCC---C--CeEEcCCCCHHHHHHHHHHcCCceeeeE-CCC------------CcEEEEEEh
Confidence 01357788752 2 578999999999999998 788899995 322 234699999
Q ss_pred HHHHHHH
Q 046022 197 MDLLRFM 203 (262)
Q Consensus 197 sDIir~L 203 (262)
+|+++.+
T Consensus 103 ~dll~~~ 109 (109)
T cd04606 103 DDVIDVI 109 (109)
T ss_pred HHhhhhC
Confidence 9998753
No 82
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.07 E-value=1.1e-09 Score=97.50 Aligned_cols=103 Identities=17% Similarity=0.284 Sum_probs=84.7
Q ss_pred cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022 27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA 106 (262)
Q Consensus 27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~ 106 (262)
-.+|+|+|... ++.++++++++.+|++.|.++++..+||+|++ ++++|+++..|+..
T Consensus 154 ~~~v~~im~~~-~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~----------------------g~~~Givt~~dl~~ 210 (268)
T TIGR00393 154 LVKVKDLMQTT-DLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN----------------------NQLVGVFTDGDLRR 210 (268)
T ss_pred hhhHHHHhCCC-CCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC----------------------CCEEEEEEcHHHHH
Confidence 36899999532 27799999999999999999999999999865 58999999999988
Q ss_pred HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEee
Q 046022 107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVP 171 (262)
Q Consensus 107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~ 171 (262)
.+.... ....++.++|.. . +.++.+++++.+|++.|. .+.+++||+
T Consensus 211 ~~~~~~--------------~~~~~v~~im~~---~--~~~v~~~~~l~~a~~~m~~~~~~~lpVv 257 (268)
T TIGR00393 211 ALLGGG--------------SLKSEVRDFMTL---G--PKTFKLDALLLEALEFLERRKITSLVVV 257 (268)
T ss_pred HHhcCC--------------cccCcHHHhCCC---C--CeEECCCCcHHHHHHHHHHcCCcEEEEE
Confidence 654311 123578999962 2 578999999999999998 689999996
No 83
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.06 E-value=2.4e-09 Score=86.09 Aligned_cols=109 Identities=23% Similarity=0.362 Sum_probs=76.3
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
.++++++++++.+|++.|.++++.++||+|++ ++++|+|+..|+++++....... .
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~----------------------g~l~Givt~~Dl~~~~~~~~~~~--~ 57 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD----------------------DFLEGILTLGDIQRFLFTNKTTR--V 57 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC----------------------CeEEEEEEHHHHHHHHhhccccc--c
Confidence 46789999999999999999999999999975 58999999999999886422110 0
Q ss_pred CCcchHHhhhccccccccccC------CCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecC
Q 046022 119 DAPDDLDKKMSAPVSSIIGHC------PEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMD 173 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~------~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~ 173 (262)
....+...-....+.++|... ..+ ++++.+++++.+|+++|. ++++++||+.+
T Consensus 58 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~--~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 58 QPEDETKQTNTCLVSSVCTKGISYGGQECG--LWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred ccchhhcccccccHHHHhhhhhhhcccCCC--CEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 000000000012233444200 013 688999999999999998 79999999643
No 84
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.06 E-value=7.4e-09 Score=98.92 Aligned_cols=165 Identities=15% Similarity=0.233 Sum_probs=117.6
Q ss_pred hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022 24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD 103 (262)
Q Consensus 24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D 103 (262)
.|.+.+|+++|++..+++.++.+.+++++.+.+.+++.+++||++.+ .+.++|++...|
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~---------------------~D~iiGiv~~Kd 260 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD---------------------LDNIIGIVHVKD 260 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC---------------------CCcEEEEEEHHH
Confidence 35789999999998999999999999999999999999999999933 368999999999
Q ss_pred HHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccc
Q 046022 104 ILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGV 182 (262)
Q Consensus 104 il~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~ 182 (262)
++.+....... . .....+. . ++.|.+++++.++++.|. ++.|-..| .|+-
T Consensus 261 ll~~~~~~~~~-----------~----~~~~~~~----~--~~~Vpet~~~~~lL~~~r~~~~hmAiV-vDEy------- 311 (429)
T COG1253 261 LLRALLDGQSD-----------L----DLRVLVR----P--PLFVPETLSLSDLLEEFREERTHMAIV-VDEY------- 311 (429)
T ss_pred HHHHHhcCccc-----------c----chhhccc----C--CeEecCCCcHHHHHHHHHHhCCeEEEE-EEcC-------
Confidence 99998863210 0 0111121 1 477999999999999999 45555555 4432
Q ss_pred eecccCCeeeEecHHHHHHHHHhhcc-cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHh
Q 046022 183 ELVESASSYQMLTQMDLLRFMMNHAS-ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRA 246 (262)
Q Consensus 183 ~~~~~~~~~giITqsDIir~L~~~~~-~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~ 246 (262)
|...|+||.+||+.-+...+. +........+-. ..... ..+....++.+..+.+.-
T Consensus 312 -----G~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~--~~~~~-~~v~G~~~l~e~~~~l~~ 368 (429)
T COG1253 312 -----GGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQ--RDDDG-WLVDGRVPLEELEELLGI 368 (429)
T ss_pred -----CCeEEEeEHHHHHHHHhCCCcCcccccccccceE--ecCCc-EEEeccccHHHHHHHhCC
Confidence 334699999999999887652 221100111111 12234 677888888887776643
No 85
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.04 E-value=2.6e-09 Score=81.66 Aligned_cols=102 Identities=21% Similarity=0.332 Sum_probs=81.0
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
.+..+++++++.++.+.|.+++...+||+++.. ..++++|+++..|+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-------------------~~~~~~G~v~~~dl~~~~~--------- 54 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTE-------------------ESPRLVGYILRSQLVVALK--------- 54 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCC-------------------CCCEEEEEEeHHHHHHHHH---------
Confidence 567899999999999999999999999998620 0158999999999876542
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
. +|.. + +.++.+++++.++++.|. ++.+.+||. ++ ++.+|+||..
T Consensus 55 -------~--------~m~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~pVv-~~-------------~~~~Gvvt~~ 100 (105)
T cd04591 55 -------N--------YIDP---S--PFTVSPRTSLEKVHQLFRKLGLRHLLVV-DE-------------GRLVGIITRK 100 (105)
T ss_pred -------H--------hccC---C--CceECCCCcHHHHHHHHHHcCCCEEEEE-EC-------------CeEEEEEEhh
Confidence 0 5542 2 567999999999999998 799999996 32 1235999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
||++|
T Consensus 101 dl~~~ 105 (105)
T cd04591 101 DLLKA 105 (105)
T ss_pred hhhcC
Confidence 99874
No 86
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.04 E-value=3.2e-09 Score=80.18 Aligned_cols=105 Identities=20% Similarity=0.360 Sum_probs=83.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022 38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS 117 (262)
Q Consensus 38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~ 117 (262)
+++++++.+.++.+|++.|.+++...+||++. ++++|+++..|++.. . .
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----------------------~~~~g~v~~~~l~~~--~-~----- 50 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN-----------------------GKVVGIVSARDLLGK--D-P----- 50 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-----------------------CEEEEEEEHHHhhcc--C-c-----
Confidence 35678999999999999999888889999874 489999999998742 0 0
Q ss_pred CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecH
Q 046022 118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQ 196 (262)
Q Consensus 118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITq 196 (262)
..+++++|.. . +.++.+++++.++++.|. .+.+++||. ++. +..+|+||.
T Consensus 51 -----------~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~------------g~~~Gvi~~ 101 (107)
T cd04610 51 -----------DETVEEIMSK---D--LVVAVPEMDIMDAARVMFRTGISKLPVV-DEN------------NNLVGIITN 101 (107)
T ss_pred -----------cccHHHhCCC---C--CeEECCCCCHHHHHHHHHHhCCCeEeEE-CCC------------CeEEEEEEH
Confidence 1257888852 2 477999999999999987 678899995 322 234699999
Q ss_pred HHHHHH
Q 046022 197 MDLLRF 202 (262)
Q Consensus 197 sDIir~ 202 (262)
.||+++
T Consensus 102 ~di~~~ 107 (107)
T cd04610 102 TDVIRS 107 (107)
T ss_pred HHhhcC
Confidence 999864
No 87
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.04 E-value=5e-09 Score=78.46 Aligned_cols=111 Identities=23% Similarity=0.384 Sum_probs=85.6
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++++++.++++.++++.|.+++...+||++++ ++++|+++..|++.++......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------~~~~G~v~~~~l~~~~~~~~~~---- 55 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD----------------------GRLVGIVTERDLLRALAEGGLD---- 55 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC----------------------CCEEEEEeHHHHHHHHHhccCC----
Confidence 45688999999999999999999999999864 5899999999999887642110
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
....+.++|.. . +..+.+++++.+++..|. .+.+.+||. +++ ++..|++|+.
T Consensus 56 ---------~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~G~i~~~ 108 (113)
T cd02205 56 ---------PLVTVGDVMTR---D--VVTVSPDTSLEEAAELMLEHGIRRLPVV-DDE------------GRLVGIVTRS 108 (113)
T ss_pred ---------ccccHHHHhcC---C--ceecCCCcCHHHHHHHHHHcCCCEEEEE-cCC------------CcEEEEEEHH
Confidence 00115566652 2 577899999999999998 578999995 432 2346999999
Q ss_pred HHHHH
Q 046022 198 DLLRF 202 (262)
Q Consensus 198 DIir~ 202 (262)
|++++
T Consensus 109 dl~~~ 113 (113)
T cd02205 109 DILRA 113 (113)
T ss_pred HhhcC
Confidence 99863
No 88
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.03 E-value=4.4e-09 Score=81.15 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=86.2
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
++.++++++++.+|++.|.+++...+||+|.+ ++++|+++..|++........- .
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~----------------------~~~~G~v~~~~l~~~~~~~~~~---~ 56 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE----------------------GRLVGIVTDRDLRDASPSPFTT---L 56 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC----------------------CcEEEEEEHHHHHHHhhhhccc---c
Confidence 46789999999999999999999999999874 5899999999987754321000 0
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
...........++.++|.. . ++++.+++++.++++.|. .+.+.+||..+ +++ +|++|..
T Consensus 57 -~~~~~~~~~~~~v~~~~~~---~--~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~---~~~-----------~Gvv~~~ 116 (121)
T cd04584 57 -SEHELYLLLKMPVKEIMTK---D--VITVHPLDTVEEAALLMREHRIGCLPVVED---GRL-----------VGIITET 116 (121)
T ss_pred -hhhhhhhhcCcCHHHHhhC---C--CeEECCCCcHHHHHHHHHHcCCCeEEEeeC---CEE-----------EEEEEHH
Confidence 0000001123468888862 2 578999999999999988 67788999533 123 5999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
||++
T Consensus 117 di~~ 120 (121)
T cd04584 117 DLLR 120 (121)
T ss_pred Hhhc
Confidence 9975
No 89
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.02 E-value=2.7e-09 Score=85.82 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=77.0
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhh-------hcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDI-------TSH 216 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l-------~~~ 216 (262)
+.++.+++++.+|++.|. ++...+||+ +++ ++.+|+||..|+++++......-... ..+
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~Vv-D~~------------g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 69 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVV-DSD------------DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTC 69 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEE-CCC------------CeEEEEEEHHHHHHHHhhccccccccchhhcccccc
Confidence 578999999999999998 688899996 432 23459999999999987532110000 001
Q ss_pred ccchh-------cccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022 217 SIREL-------GALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT 261 (262)
Q Consensus 217 ti~eL-------~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~ 261 (262)
.+.++ +.|.++++++++++++.+|+++|.++++.++||+|+++++
T Consensus 70 ~v~~i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~~~ 121 (133)
T cd04592 70 LVSSVCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGVDR 121 (133)
T ss_pred cHHHHhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCcCc
Confidence 12222 1135679999999999999999999999999999988765
No 90
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.01 E-value=2e-09 Score=96.26 Aligned_cols=145 Identities=21% Similarity=0.323 Sum_probs=102.6
Q ss_pred CeEEEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhh-------------ccccccccccCCCCCeeEEeCCCCCHHHHHH
Q 046022 93 KHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKM-------------SAPVSSIIGHCPEGLSLWTLSPNTSILDCME 159 (262)
Q Consensus 93 ~~~vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~-------------~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~ 159 (262)
..-+|| +..|+-..+-+-.+.. |-..+|++..+ .-.-.+||++ + ++++.+++++.+|..
T Consensus 198 ~~rvgf-s~~Dld~aL~~~~E~l--DIdrddLe~llr~~elqa~~R~~~~LtcadIMSr---d--Vvtv~~~ts~dhA~~ 269 (382)
T COG3448 198 SQRVGF-SSEDLDAALQRLGETL--DIDRDDLERLLRETELQALRRRMGELTCADIMSR---D--VVTVSTDTSIDHARK 269 (382)
T ss_pred hhccCC-CHHHHHHHHHhcCcee--cCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc---c--ceecCCcCChHHHHH
Confidence 345676 8889887777532221 11122222111 2355689973 4 899999999999999
Q ss_pred HHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh-cccchhhhccccchhcccCcCeEEEeCCCcH
Q 046022 160 VFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH-ASELKDITSHSIRELGALNENVFAITESTKV 237 (262)
Q Consensus 160 ~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~-~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~ 237 (262)
+|. ++++.+||. |++ .+.+||+||+|+.+...-. ...+..+..-+++ ++|++++.|+.+++|+
T Consensus 270 ll~~H~ikaLPV~-d~~------------~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk--~imt~~v~tv~pdtpa 334 (382)
T COG3448 270 LLQEHRIKALPVL-DEH------------RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVK--GIMTTPVVTVRPDTPA 334 (382)
T ss_pred HHHHcCccccccc-ccc------------cceeeeeeHHHHhhccCcchHHHhhccCCCccc--ccccCcceeecCCCcH
Confidence 888 799999995 432 2335999999998733221 1112233444566 4799999999999999
Q ss_pred HHHHHHHHhCCCcEEEEEcCCCC
Q 046022 238 IDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 238 ~~A~~lM~~~~isav~VVd~~g~ 260 (262)
.+.+.++.+.+..++||+|+.|.
T Consensus 335 ~~lvp~lad~g~H~lpvld~~g~ 357 (382)
T COG3448 335 VELVPRLADEGLHALPVLDAAGK 357 (382)
T ss_pred HHHHHHhhcCCcceeeEEcCCCc
Confidence 99999999999999999999884
No 91
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.99 E-value=1.2e-09 Score=74.38 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=50.9
Q ss_pred eccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHh
Q 046022 30 VRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIA 109 (262)
Q Consensus 30 v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~ 109 (262)
|+|+|. ++++++++++++.+|++.|.++++.++||+|++ ++++|+++..||++++.
T Consensus 1 v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~----------------------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMT--PPPITVSPDDSLEEALEIMRKNGISRLPVVDED----------------------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSB--SSSEEEETTSBHHHHHHHHHHHTSSEEEEESTT----------------------SBEEEEEEHHHHHHHHH
T ss_pred CeECCc--CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC----------------------CEEEEEEEHHHHHhhhh
Confidence 578995 378899999999999999999999999999875 69999999999999875
No 92
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.99 E-value=6.6e-09 Score=80.65 Aligned_cols=100 Identities=13% Similarity=0.208 Sum_probs=75.6
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccch---
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRE--- 220 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~e--- 220 (262)
+.++.+++++.+|++.|. .+.+++||+ +++ ++.+|++|..|+++++..+.... ...++.+
T Consensus 3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv-~~~------------~~~~Giv~~~dl~~~~~~~~~~~---~~~~~~~~~~ 66 (120)
T cd04641 3 IATARPDTPLIDVLDMLVERRVSALPIV-DEN------------GKVVDVYSRFDVINLAKEGAYNN---LDLTVGEALE 66 (120)
T ss_pred cEEEcCCCCHHHHHHHHHHcCCCeeeEE-CCC------------CeEEEEEeHHHHHHHHhcCcccc---ccCCHHHHHh
Confidence 578999999999999998 688999996 332 23459999999998775432100 0111221
Q ss_pred -hcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 221 -LGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 221 -L~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
...+.+++.++.+++++.+|+++|.+++++.+||+|++|.
T Consensus 67 ~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~ 107 (120)
T cd04641 67 RRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKR 107 (120)
T ss_pred hcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCC
Confidence 1234567899999999999999999999999999998764
No 93
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.98 E-value=8.1e-09 Score=83.23 Aligned_cols=121 Identities=21% Similarity=0.310 Sum_probs=87.1
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCC---CCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDD---QMN 115 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~---~l~ 115 (262)
+++++++++++.+|++.|.++++.++||++. ++++|+++..|+..++.... .+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-----------------------~~~~G~v~~~dl~~~~~~~~~~~~~~ 58 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-----------------------GKLVGIVSESDILKLLVTHDPSGNLW 58 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-----------------------CeEEEEecHHHHHHHHHhccCccccc
Confidence 4678999999999999999999999999985 37999999999988765321 000
Q ss_pred CCCC------------Ccch----HHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcc
Q 046022 116 GSDD------------APDD----LDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMEN 178 (262)
Q Consensus 116 ~~~~------------~~~~----~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~ 178 (262)
..+. .+.+ ..+....++.++|.. + +.++.+++++.+++..|. .+.+++||+.+ + +
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~--~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~--~ 130 (143)
T cd04634 59 LPSPLELIELPLREFINWEETKRALTDAGKMKVRDIMTK---K--VITISPDASIEDAAELMVRHKIKRLPVVED-G--R 130 (143)
T ss_pred cCCcceeeeccchheeehHHHHHHHHHHhcCCHHHHcCC---C--CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-C--E
Confidence 0000 0000 011124567788852 3 578999999999999998 68889999633 1 2
Q ss_pred cccceecccCCeeeEecHHHHHH
Q 046022 179 ISGVELVESASSYQMLTQMDLLR 201 (262)
Q Consensus 179 ~~g~~~~~~~~~~giITqsDIir 201 (262)
+ +|+||+.|+++
T Consensus 131 ~-----------~Gvvt~~dl~~ 142 (143)
T cd04634 131 L-----------VGIVTRGDIIE 142 (143)
T ss_pred E-----------EEEEEHHHhhc
Confidence 3 59999999875
No 94
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.97 E-value=2.7e-09 Score=97.38 Aligned_cols=120 Identities=17% Similarity=0.243 Sum_probs=100.6
Q ss_pred ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022 28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH 107 (262)
Q Consensus 28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~ 107 (262)
.+|.|+|++-.....+..++++++-.++-.+.+.+++||+|.. .+++|+|+++|++..
T Consensus 188 ~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~----------------------~kvvGvVt~rDv~~~ 245 (432)
T COG4109 188 ITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS----------------------MKVVGVVTMRDVLDK 245 (432)
T ss_pred eeHHHhccccccceeccccccHHHHHHHHHHcCCCccceeccc----------------------ceEEEEEEehhhhcC
Confidence 4699999866677899999999999999999999999999974 689999999997643
Q ss_pred HhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecc
Q 046022 108 IAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVE 186 (262)
Q Consensus 108 l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~ 186 (262)
-. .+++..+|++ + +.++.+.+|+..+..+|. .|+.-+||+.++
T Consensus 246 ~~-------------------~t~ieKVMtk---n--p~tv~~~tsVAsvaq~MiwE~iem~PVv~~n------------ 289 (432)
T COG4109 246 KP-------------------STTIEKVMTK---N--PITVRAKTSVASVAQMMIWEGIEMLPVVDSN------------ 289 (432)
T ss_pred CC-------------------CccHHHHhcc---C--CeeecccchHHHHHHHHHhccceeeeEEcCC------------
Confidence 22 3578889984 5 489999999999999998 999999996432
Q ss_pred cCCeeeEecHHHHHHHHHhh
Q 046022 187 SASSYQMLTQMDLLRFMMNH 206 (262)
Q Consensus 187 ~~~~~giITqsDIir~L~~~ 206 (262)
.+.+||||++|+++.|...
T Consensus 290 -~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 290 -NTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred -ceEEEEEEHHHHHHHHHHh
Confidence 2346999999999988754
No 95
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.95 E-value=1.4e-08 Score=78.25 Aligned_cols=98 Identities=17% Similarity=0.280 Sum_probs=77.7
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+...+||+ ++. ++..|+||..|+++++..... .....+++++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vv-d~~------------g~~~G~vt~~dl~~~~~~~~~---~~~~~~v~~~-- 64 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVC-DPH------------GKLAGVLTKTDVVRQMGRCGG---PGCTAPVENV-- 64 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEE-CCC------------CCEEEEEehHHHHHHHhhcCC---CcccCCHHHH--
Confidence 567899999999999998 678888885 322 234599999999987654211 1123456664
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.++++++.+++++.+|++.|.++++..+||+|++|.
T Consensus 65 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~ 101 (114)
T cd04619 65 MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENAR 101 (114)
T ss_pred hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCc
Confidence 7788999999999999999999999999999998764
No 96
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.94 E-value=2e-08 Score=94.54 Aligned_cols=181 Identities=17% Similarity=0.224 Sum_probs=134.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCC
Q 046022 37 KRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNG 116 (262)
Q Consensus 37 ~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~ 116 (262)
+++++.+.+..++-+|...|.++++.++||.|.+. +.+..++|..-|++++-.....
T Consensus 161 ~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~---------------------~~v~~ilt~~rIl~~l~~~~~~-- 217 (381)
T KOG1764|consen 161 KPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPET---------------------GEVLYILTQRRILKFLWLNGRL-- 217 (381)
T ss_pred CCCceeecCcHHHHHHHHHHHhCCccceeeecccc---------------------cceeeehhHHHHHHHHHHhhcc--
Confidence 45668999999999999999999999999999542 5899999999999998753211
Q ss_pred CCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEec
Q 046022 117 SDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLT 195 (262)
Q Consensus 117 ~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giIT 195 (262)
..+...+..++.++---...+ +..+..++++.+|+++|. +++..+||+...+ ..+|.+|
T Consensus 218 -----~~~~~~l~~s~~dl~ig~~~~--i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g-------------~~v~~~s 277 (381)
T KOG1764|consen 218 -----LPLPSLLSKSLSDLGIGTWSN--IASISEDTPVIEALKIMSERRISALPVVDENG-------------KKVGNYS 277 (381)
T ss_pred -----cccHHHhhCCHHHhCcchhhh--heeecCCCcHHHHHHHHHhcCcCcceEEcCCC-------------ceeccee
Confidence 013355666777754322233 678999999999999999 7999999964322 2259999
Q ss_pred HHHHHHHHHhhc-ccchhh-hccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 196 QMDLLRFMMNHA-SELKDI-TSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 196 qsDIir~L~~~~-~~l~~l-~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
..|+...+.+.. +.+... ........++-...|++++++.++.+++..|..+++.++.|||++|.
T Consensus 278 ~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~ 344 (381)
T KOG1764|consen 278 RFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGV 344 (381)
T ss_pred hhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCc
Confidence 999977665532 222211 11111222223356999999999999999999999999999999763
No 97
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.94 E-value=9.8e-09 Score=78.79 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=75.0
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.+|++.|. ++.++++|. +++ ++.+|+||..|+.+.... .....++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~dl~~~~~~------~~~~~~v~~~-- 61 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVV-DEE------------NKVLGQVTLSDLLEIGPN------DYETLKVCEV-- 61 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEE-cCC------------CCEEEEEEHHHHHhhccc------cccccChhhe--
Confidence 477899999999999998 678899985 322 234699999999874211 1112456664
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
|..++.++++++++.+|+++|.+++.+.+||||++|.
T Consensus 62 ~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~ 98 (111)
T cd04603 62 YIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGK 98 (111)
T ss_pred eecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCe
Confidence 7778899999999999999999999999999998763
No 98
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.92 E-value=9.8e-09 Score=93.96 Aligned_cols=114 Identities=19% Similarity=0.332 Sum_probs=89.1
Q ss_pred HHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHH
Q 046022 124 LDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRF 202 (262)
Q Consensus 124 ~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~ 202 (262)
+.+++..+|+++|... ++ +.++.+++++.+|++.|. .+...+||+ +++ ++.+|+||..|+.++
T Consensus 191 l~~~~~~~V~~im~~~-~~--~~~v~~~~sv~~a~~~~~~~~~~~~~Vv-d~~------------g~~iG~vt~~dl~~~ 254 (321)
T PRK11543 191 LGARLLNKVHHLMRRD-DA--IPQVALTASVMDAMLELSRTGLGLVAVC-DAQ------------QQVQGVFTDGDLRRW 254 (321)
T ss_pred HHHHHHhHHHHHhccC-CC--CcEeCCCCCHHHHHHHHHHcCCCEEEEE-cCC------------CcEEEEecHHHHHHH
Confidence 3345568999999842 12 578999999999999997 577789986 322 244699999999987
Q ss_pred HHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 203 MMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 203 L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+..... ...++++ +|++++.++.+++++.+|++.|.++++..+||||++|.
T Consensus 255 ~~~~~~-----~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~ 305 (321)
T PRK11543 255 LVGGGA-----LTTPVNE--AMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGK 305 (321)
T ss_pred HhCCCC-----cCCcHHH--hcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCe
Confidence 754211 1345676 48889999999999999999999999999999998763
No 99
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.90 E-value=2.2e-08 Score=77.53 Aligned_cols=96 Identities=18% Similarity=0.277 Sum_probs=76.2
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. ++...+||..+ + ++.+|+||..||++.+.... .....++++ +
T Consensus 3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-~------------~~~~Givt~~dl~~~~~~~~----~~~~~~~~~--~ 63 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDE-D------------GDLVGVVSRKDLLKASIGGA----DLQKVPVGV--I 63 (118)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcC-C------------CCEEEEEEHHHHHHHHHcCC----CccCCCHHH--H
Confidence 478999999999999997 78889998532 2 23459999999999875421 112345665 3
Q ss_pred cCc--CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022 224 LNE--NVFAITESTKVIDAIKCMRAALLHAVPIVKSSG 259 (262)
Q Consensus 224 ~~~--~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g 259 (262)
|.+ ++.++++++++.+|+++|.++++..+||||++|
T Consensus 64 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~ 101 (118)
T cd04617 64 MTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVD 101 (118)
T ss_pred hCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCC
Confidence 653 789999999999999999999999999999874
No 100
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.89 E-value=2.8e-08 Score=75.21 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=81.3
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+++++.+++++.+|++.|.+++...+||++.+ ++++|+++..|++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------~~~~g~v~~~~l~~~~~--------- 50 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS----------------------GELVGIITRKDLLRNPE--------- 50 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC----------------------CcEEEEEEHHHHHhccc---------
Confidence 56789999999999999999999999999864 58999999999864210
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
..++.++|.. . +.++.+++++.+++..|. .+.+.+||..+ + ++ .|+||..
T Consensus 51 ----------~~~~~~~~~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~--~~-----------~G~it~~ 101 (106)
T cd04638 51 ----------EEQLALLMTR---D--PPTVSPDDDVKEAAKLMVENNIRRVPVVDD-G--KL-----------VGIVTVA 101 (106)
T ss_pred ----------cchHHHHhcC---C--CceECCCCCHHHHHHHHHHcCCCEEEEEEC-C--EE-----------EEEEEHH
Confidence 1145666652 2 477899999999999998 78889999632 1 23 4999999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
|+++
T Consensus 102 d~~~ 105 (106)
T cd04638 102 DIVR 105 (106)
T ss_pred Hhhc
Confidence 9875
No 101
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.88 E-value=2.1e-08 Score=76.99 Aligned_cols=96 Identities=13% Similarity=0.326 Sum_probs=76.2
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. ++.+.+||..++ . ++.+|++|.+|+++++..... .....++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~-----------~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~-- 65 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRR-E-----------SDAYGIVTMRDILKKVVAEGR---DPDRVNVYEI-- 65 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEEECC-C-----------CcEEEEEehHHHHHHHHhCCC---CCCccCHHHH--
Confidence 578999999999999998 688889985332 0 234599999999997755211 1123456764
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
|.+++.++++++++.+|+++|.+++...+||+|+
T Consensus 66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~ 99 (114)
T cd04630 66 MTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN 99 (114)
T ss_pred hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC
Confidence 7788999999999999999999999999999987
No 102
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.88 E-value=1.3e-08 Score=93.43 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=82.3
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
..+|+++|.. .++ +.++.++++|.+|+++|. ++.+.+||+ +++ ++.+|+||..|+.+.+....
T Consensus 201 ~~~V~dim~~-~~~--~~~v~~~~sl~~a~~~~~~~~~~~~vVv-d~~------------g~lvGivt~~Dl~~~~~~~~ 264 (326)
T PRK10892 201 LLRVSDIMHT-GDE--IPHVSKTASLRDALLEITRKNLGMTVIC-DDN------------MKIEGIFTDGDLRRVFDMGI 264 (326)
T ss_pred cCcHHHHhCC-CCC--CeEECCCCCHHHHHHHHHhcCCCeEEEE-cCC------------CcEEEEEecHHHHHHHhcCC
Confidence 4579999972 113 688999999999999998 565555553 422 34569999999988554321
Q ss_pred ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
++...++++ +|++++.++.+++++.+|+++|.++++..+||+|+
T Consensus 265 ----~~~~~~v~~--im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~ 308 (326)
T PRK10892 265 ----DLRQASIAD--VMTPGGIRVRPGILAVDALNLMQSRHITSVLVADG 308 (326)
T ss_pred ----CcccCCHHH--hcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEeeC
Confidence 123456777 48999999999999999999999999999999974
No 103
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.87 E-value=2.4e-08 Score=78.29 Aligned_cols=102 Identities=17% Similarity=0.260 Sum_probs=75.6
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhc-------c
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITS-------H 216 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~-------~ 216 (262)
+.++.+++++.++++.|. +++..+||+ ++. ++.+|+||+.|++++......... ... .
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~-d~~------------~~~~Giv~~~dl~~~~~~~~~~~~-~~~~~~~~~~~ 68 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVV-DEK------------GKLIGNISASDLKGLLLSPDDLLL-YRTITFKELSE 68 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEE-CCC------------CcEEEEEEHHHhhhhhcCcchhhc-ccchhhhhhhh
Confidence 578999999999999888 688899995 322 234699999999997754321110 000 0
Q ss_pred ccc-hhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 217 SIR-ELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 217 ti~-eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
.+. ....+.+++.++.+++++.+|+++|.+++++.+||||++|+
T Consensus 69 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~ 113 (126)
T cd04642 69 KFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGK 113 (126)
T ss_pred hcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCC
Confidence 011 12346678999999999999999999999999999998764
No 104
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.87 E-value=5e-08 Score=75.09 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=81.9
Q ss_pred cEEEEcCCCCHHHHHHHHHhCC-CceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANK-VVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGS 117 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~-i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~ 117 (262)
++.++++++++.+|++.|.+++ +..+||+++ + +++|+++..|++..+....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~----------------------~~~G~v~~~~l~~~~~~~~----- 53 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-G----------------------RPVGLIMREALMELLSTPY----- 53 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-C----------------------eeEEEEEHHHHHHHHhchh-----
Confidence 4557899999999999998887 899999986 4 7999999999987654310
Q ss_pred CCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCe---eEeecCCCCcccccceecccCCeeeE
Q 046022 118 DDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHR---ALVPMDSRMENISGVELVESASSYQM 193 (262)
Q Consensus 118 ~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~r---v~V~~~~~~~~~~g~~~~~~~~~~gi 193 (262)
........++.++|.. . +..+.+++++.+++..|. .+.++ .+|+.++ +..+|+
T Consensus 54 -----~~~~~~~~~v~~~~~~---~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~-------------~~~~Gv 110 (119)
T cd04598 54 -----GRALYGKKPVSEVMDP---D--PLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE-------------GRYLGI 110 (119)
T ss_pred -----hHHHHcCCcHHHhcCC---C--cEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-------------CeEEEE
Confidence 0001123478899862 2 578999999999999987 45433 3453322 234699
Q ss_pred ecHHHHHH
Q 046022 194 LTQMDLLR 201 (262)
Q Consensus 194 ITqsDIir 201 (262)
||..|+++
T Consensus 111 vs~~di~~ 118 (119)
T cd04598 111 GTVKDLLR 118 (119)
T ss_pred EEHHHHhc
Confidence 99999975
No 105
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.87 E-value=2.9e-08 Score=76.96 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=77.7
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc-c-h----hhhccc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE-L-K----DITSHS 217 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~-l-~----~l~~~t 217 (262)
+.++.+++++.++++.|. ++.+++||. ++. ++.+|+||+.|+++++...... + . .....+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 70 (124)
T cd04600 4 VVTVTPDTSLEEAWALLRRHRIKALPVV-DGD------------RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPET 70 (124)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCceeeEE-CCC------------CCEEEEEEHHHHHhhhcccccchhhhhhhccccccc
Confidence 578999999999999998 678899985 322 2446999999999877543210 0 0 011234
Q ss_pred cchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 218 IRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 218 i~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+ ++.++++++++++++.+|++.|..++.+.+||+|++|.
T Consensus 71 i~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~ 111 (124)
T cd04600 71 VGD--IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRR 111 (124)
T ss_pred HHH--hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCC
Confidence 565 37788999999999999999999999999999998764
No 106
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.85 E-value=3.8e-08 Score=74.86 Aligned_cols=95 Identities=23% Similarity=0.331 Sum_probs=77.0
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+..++||+ ++. ++.+|+|++.|+.+++..... ..++.+ +
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~-~~~------------~~~~G~v~~~~l~~~~~~~~~------~~~v~~--~ 61 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQHEFPVV-DGD------------GHLVGLLTRDDLIRALAEGGP------DAPVRG--V 61 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCCCcceEE-CCC------------CcEEEEeeHHHHHHHHHhcCC------CCcHHH--H
Confidence 578999999999999987 577899985 322 244699999999998765321 235666 3
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+++.++.+++++.+|++.|.+++...+||+|++|.
T Consensus 62 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~ 98 (111)
T cd04639 62 MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGR 98 (111)
T ss_pred hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCC
Confidence 6778999999999999999999999999999988664
No 107
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.85 E-value=3.3e-08 Score=75.63 Aligned_cols=99 Identities=13% Similarity=0.239 Sum_probs=76.2
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc-chhhhccccchhc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE-LKDITSHSIRELG 222 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~-l~~l~~~ti~eL~ 222 (262)
+.++.+++++.++++.|. ++++.+||. ++. ++.+|++|..|+++++.+.... +..+...+++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-d~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~- 68 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVL-DKE------------GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDV- 68 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeE-CCC------------CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHH-
Confidence 578999999999999998 688899995 322 2346999999999988643211 111224567764
Q ss_pred ccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 223 ALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 223 ~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+++.++.+++++.+|+++|.+++ .+||+|++|.
T Consensus 69 -~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~ 103 (116)
T cd04643 69 -MNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGI 103 (116)
T ss_pred -hcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCe
Confidence 7788999999999999999998865 5999998764
No 108
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.84 E-value=4.8e-08 Score=74.88 Aligned_cols=95 Identities=12% Similarity=0.240 Sum_probs=73.6
Q ss_pred eEEeCCCCCHHHHHHHHh-cC-CCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhc
Q 046022 145 LWTLSPNTSILDCMEVFS-KG-IHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELG 222 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g-~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~ 222 (262)
+.++.+++++.+|++.|. ++ .+++||+ ++. ++.+|++|..||+++..... ...++.++
T Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~dl~~~~~~~~------~~~~v~~~- 62 (114)
T cd04801 3 FPTVPAHLTLREFVREYVLGSNQRRFVVV-DNE------------GRYVGIISLADLRAIPTSQW------AQTTVIQV- 62 (114)
T ss_pred cceeCCCCCHHHHHHHHhccCCceeEEEE-cCC------------CcEEEEEEHHHHHHHHHhhc------cccchhhh-
Confidence 578999999999999886 44 7788885 322 24469999999998764321 13456663
Q ss_pred ccCc--CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 223 ALNE--NVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 223 ~~~~--~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+ .+.++.+++++.+|++.|.+++.+.+||+|++|.
T Consensus 63 -~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~ 101 (114)
T cd04801 63 -MTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQ 101 (114)
T ss_pred -hcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCc
Confidence 553 3679999999999999999999999999998653
No 109
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.84 E-value=5.5e-08 Score=74.38 Aligned_cols=95 Identities=22% Similarity=0.358 Sum_probs=75.8
Q ss_pred EEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhccc
Q 046022 146 WTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGAL 224 (262)
Q Consensus 146 ~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~ 224 (262)
.++.+++++.++++.|. .+.+.++|. +++ ++.+|++|.+|+++.+..... ...++.+ ++
T Consensus 5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~-d~~------------~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~--~~ 64 (113)
T cd04607 5 LLVSPDASILDALRKIDKNALRIVLVV-DEN------------GRLLGTVTDGDIRRALLKGLS-----LDDPVSE--VM 64 (113)
T ss_pred eEECCCCCHHHHHHHHHhcCcCEEEEE-CCC------------CCEEEEEEcHHHHHHHhcCCC-----cCCCHHH--hh
Confidence 67899999999999998 577788885 322 234699999999987764321 1235666 47
Q ss_pred CcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 225 NENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 225 ~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
.+++.++.+++++.+|+++|.+++.+.+||||++|.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~ 100 (113)
T cd04607 65 NRNPITAKVGSSREEILALMRERSIRHLPILDEEGR 100 (113)
T ss_pred cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCC
Confidence 778999999999999999999999999999998764
No 110
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.81 E-value=8.8e-08 Score=72.68 Aligned_cols=93 Identities=19% Similarity=0.301 Sum_probs=75.8
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. ++..+++|. ++. ++..|++|+.|+++.+.... .++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~~l~~~~~~~~--------~~~~~~-- 60 (110)
T cd04605 4 VVTISEDASIKEAAKLMIEENINHLPVV-DED------------GRLVGIVTSWDISKAVARDK--------KSVEDI-- 60 (110)
T ss_pred CEEECCCCCHHHHHHHHHhCCCceEEEE-CCC------------CcEEEEEeHHHHHHHHhhCc--------cCHHHh--
Confidence 578999999999999988 678899985 322 34469999999998765431 235553
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+++.++.+++++.+|++.|.+++...+||++++|.
T Consensus 61 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~ 97 (110)
T cd04605 61 MTRNVITATPDEPIDVAARKMERHNISALPVVDAENR 97 (110)
T ss_pred cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCc
Confidence 6678999999999999999999999999999998764
No 111
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.80 E-value=1.1e-07 Score=72.40 Aligned_cols=96 Identities=19% Similarity=0.341 Sum_probs=77.6
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+..+.+++++.++++.|. .+.+++||. +++ ++.+|+||+.|+++++.+... ...++.+ +
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~-d~~------------~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~--~ 62 (112)
T cd04624 3 VVTVDPDTSIREAAKLMAEENVGSVVVV-DPD------------ERPIGIVTERDIVRAVAAGID-----LDTPVSE--I 62 (112)
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEE-CCC------------CCEEEEeeHHHHHHHHhccCC-----CccCHHH--h
Confidence 467899999999999887 688899995 322 234699999999998765321 1345665 4
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
|.+++.++.+++++.++++.|.+++.+.+||++++|.
T Consensus 63 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~ 99 (112)
T cd04624 63 MTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGE 99 (112)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCc
Confidence 7788999999999999999999999999999998774
No 112
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.78 E-value=9.5e-08 Score=72.84 Aligned_cols=97 Identities=20% Similarity=0.302 Sum_probs=76.3
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
...+.+++++.++++.|. .+.+++||+.+ . +..+|++|+.|+.+.+... +. +...++.+ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~-~------------~~~~G~v~~~dl~~~~~~~-~~---~~~~~i~~--~ 63 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDD-K------------KRLVGIITRYDVLSYALES-EE---LKDAKVRE--V 63 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcC-C------------CCEEEEEEHHHHHHhhhhh-hh---hcCCcHHH--h
Confidence 367899999999999888 57788998533 2 2346999999999865442 11 12345666 4
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+++.++.+++++.++++.|.+++...+||+|++|.
T Consensus 64 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~ 100 (113)
T cd04615 64 MNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGK 100 (113)
T ss_pred ccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCe
Confidence 7778999999999999999999999999999998764
No 113
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.77 E-value=9.2e-08 Score=73.15 Aligned_cols=94 Identities=23% Similarity=0.428 Sum_probs=78.1
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.+|+..|. ++++++||. +.. +..|++|..|+++++........ ++.+ +
T Consensus 9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~-~~~-------------~l~Giit~~di~~~~~~~~~~~~-----~v~~--v 67 (117)
T COG0517 9 VITVKPDTSVRDALLLMSENGVSAVPVV-DDG-------------KLVGIITERDILRALAAGGKRLL-----PVKE--V 67 (117)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEe-eCC-------------EEEEEEEHHHHHHHHhccCCccc-----cHHH--h
Confidence 588999999999999999 789999995 321 23599999999999987542211 4555 4
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHh-CCCcEEEEEcCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRA-ALLHAVPIVKSSG 259 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~-~~isav~VVd~~g 259 (262)
|+++++++.++.++.+|++.|.+ ++++++||+++++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~ 104 (117)
T COG0517 68 MTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDG 104 (117)
T ss_pred ccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCC
Confidence 77799999999999999999999 7999999999885
No 114
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.77 E-value=5.2e-08 Score=86.76 Aligned_cols=108 Identities=17% Similarity=0.249 Sum_probs=85.8
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
..+|+++|.. .+ +.++.+++++.++++.|. .+...++|+ +++ ++.+|++|..|+++++....
T Consensus 154 ~~~v~~im~~--~~--~~~v~~~~~v~~a~~~~~~~~~~~~~Vv-d~~------------g~~~Givt~~dl~~~~~~~~ 216 (268)
T TIGR00393 154 LVKVKDLMQT--TD--LPLIAPTTSFKDALLEMSEKRLGSAIVC-DEN------------NQLVGVFTDGDLRRALLGGG 216 (268)
T ss_pred hhhHHHHhCC--CC--CCcCCCCCcHHHHHHHHhhcCCcEEEEE-eCC------------CCEEEEEEcHHHHHHHhcCC
Confidence 4689999973 22 367999999999999998 577888885 322 24469999999998764321
Q ss_pred ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
-...+++++ |.+++.++.+++++.+|+++|.++++..+||+|++|.
T Consensus 217 -----~~~~~v~~i--m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~ 262 (268)
T TIGR00393 217 -----SLKSEVRDF--MTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNK 262 (268)
T ss_pred -----cccCcHHHh--CCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCe
Confidence 124567774 8888999999999999999999999999999998774
No 115
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.76 E-value=1.3e-07 Score=71.65 Aligned_cols=94 Identities=22% Similarity=0.398 Sum_probs=75.5
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. ++++++||. +++ ++ .|++++.|++++...... ..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~--~~-----------~G~v~~~~l~~~~~~~~~------~~~v~~~-- 60 (110)
T cd04588 3 LITLNPNATLREAARLFNTHHIHGAPVV-DDG--KL-----------VGIVTLSDIAHAIARGLE------LAKVKDV-- 60 (110)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCEEEEe-eCC--EE-----------EEEEEHHHHHHHHhcccc------ccCHHHH--
Confidence 577999999999999887 688899985 332 23 499999999997654321 1345653
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+..++.++.++.++.++++.|.+.+...+||++++|.
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ 97 (110)
T cd04588 61 MTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGR 97 (110)
T ss_pred hcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCC
Confidence 6778999999999999999999999999999998764
No 116
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.75 E-value=1.1e-07 Score=73.48 Aligned_cols=101 Identities=25% Similarity=0.346 Sum_probs=78.4
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccch-----hhhcccc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELK-----DITSHSI 218 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~-----~l~~~ti 218 (262)
+.++.+++++.++++.|. .+++++||. ++. ++.+|++|..||++++........ .....++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v 69 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVV-NED------------GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPV 69 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCcccccEE-CCC------------CCEEEEEEHHHHHHHhccccccccccccccccCcCH
Confidence 577999999999999998 688899995 322 234699999999998765321100 1123455
Q ss_pred chhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 219 RELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 219 ~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
.+ ++.+++.++.+++++.+|+++|.+++...+||+|++|.
T Consensus 70 ~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~ 109 (122)
T cd04803 70 AE--VMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGT 109 (122)
T ss_pred HH--hhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCC
Confidence 65 47788999999999999999999999999999998663
No 117
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.75 E-value=8.6e-08 Score=74.41 Aligned_cols=102 Identities=22% Similarity=0.389 Sum_probs=78.3
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc-------chhhhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE-------LKDITSH 216 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~-------l~~l~~~ 216 (262)
+.++.+++++.+++++|. .+.+.+||. +++. ++.+|+|++.|+++++.+.... .......
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~-d~~~-----------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 70 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVV-DEGT-----------GKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINE 70 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeE-eCCC-----------CEEEEEEEHHHHHHHhhccchhccccccccchhhhc
Confidence 567899999999999998 577789985 3221 2446999999999988653211 0012234
Q ss_pred ccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 217 SIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 217 ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
++.++ +.+++.++.+++++.++++.|.+.+...+||+|++|.
T Consensus 71 ~~~~~--~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~ 112 (125)
T cd04631 71 PVRSI--MTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGK 112 (125)
T ss_pred CHHHH--hcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCc
Confidence 56664 6778999999999999999999999999999998653
No 118
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.75 E-value=1.1e-07 Score=72.36 Aligned_cols=93 Identities=16% Similarity=0.288 Sum_probs=75.3
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. ++.+++||+.+ . ++..|++|..|++++...... ...++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~------------~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~-- 62 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVKDN-E------------EKLKGVVTFTDILDLDLFESF-----LEKKVFNI-- 62 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEEcC-C------------CCEEEEEehHHhHHHHhhccc-----ccCcHHHH--
Confidence 577999999999999887 68889999632 2 234599999999987644211 13467764
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
+.+++.++.+++++.+|++.|.+++...+||+|+
T Consensus 63 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04626 63 VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD 96 (111)
T ss_pred hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence 7788999999999999999999999999999987
No 119
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.74 E-value=1.9e-07 Score=70.82 Aligned_cols=95 Identities=18% Similarity=0.353 Sum_probs=76.0
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+.+++||..+ . ++.+|++|..|+++++...... ....++.++
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-~------------~~~~Giv~~~~l~~~~~~~~~~---~~~~~~~~~-- 64 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEKNIGAVVVVDD-G------------GRLVGIFSERDIVRKVALRGAS---ALDTPVSEI-- 64 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEECC-C------------CCEEEEEehHHHHHHHhhcCCC---ccccCHHHh--
Confidence 467899999999999887 67889999532 2 2346999999999987653211 113456764
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
+.+++.++.++.++.+|++.|.+++.+.+||+++
T Consensus 65 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~ 98 (113)
T cd04623 65 MTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG 98 (113)
T ss_pred cCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC
Confidence 7778999999999999999999999999999987
No 120
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.74 E-value=1.3e-07 Score=75.67 Aligned_cols=98 Identities=20% Similarity=0.367 Sum_probs=76.1
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc--------------
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE-------------- 209 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~-------------- 209 (262)
+.++.+++++.+|++.|. .+...+||. ++. +++.|++|+.|+++++......
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~-d~~------------~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 69 (135)
T cd04621 3 IATVHPEHSLLHVVDEMEKNGVGRVIVV-DDN------------GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAG 69 (135)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCcceEE-CCC------------CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcc
Confidence 567999999999999998 577889995 432 3446999999999987532110
Q ss_pred -----chhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 210 -----LKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 210 -----l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
.......+++++ +.+++.++.+++++.+|++.|.+++...+||+++
T Consensus 70 ~~~~~~~~~~~~~v~~~--~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~ 120 (135)
T cd04621 70 QKRYRYVKEVPLVAEDI--MTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN 120 (135)
T ss_pred cccccccccccccHHHh--cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC
Confidence 001123457764 7788999999999999999999999999999987
No 121
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.74 E-value=8.5e-08 Score=73.12 Aligned_cols=96 Identities=18% Similarity=0.309 Sum_probs=75.5
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. ++.+++||. ++. ++.+|+||..|+++.+.+.... .....++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~------------~~~~G~v~~~~l~~~~~~~~~~--~~~~~~v~~~-- 65 (114)
T cd04629 3 PVTFTPDMSVTEAVEKLLKSKISGGPVV-DDN------------GNLVGFLSEQDCLKQLLESSYH--CDGVATVRDI-- 65 (114)
T ss_pred CeEeCCCCCHHHHHHHHHhcCCCCccEE-CCC------------CeEEEEeehHHHHHHhhhhhhc--cCCCccHHHH--
Confidence 577999999999999887 577888885 322 2346999999999987653211 1123456663
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
+.+++.++.+++++.+|++.|.+++.+.+||+|+
T Consensus 66 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 99 (114)
T cd04629 66 MTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD 99 (114)
T ss_pred hccCceEECCCCcHHHHHHHHHHhCCCccCEEEC
Confidence 7778899999999999999999999999999987
No 122
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.73 E-value=8.2e-08 Score=76.09 Aligned_cols=100 Identities=20% Similarity=0.311 Sum_probs=76.6
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc---------------
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS--------------- 208 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~--------------- 208 (262)
+.++.+++++.++++.|. .+.+++||+ ++. ++.+|+||..|+++++.....
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vv-d~~------------~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 70 (135)
T cd04586 4 VVTVSPETSVAEAARLMLDNHISGLPVV-DDD------------GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEE 70 (135)
T ss_pred CEEeCCCCCHHHHHHHHHHcCCCCceEE-CCC------------CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHH
Confidence 578999999999999988 688899996 422 234699999999987643210
Q ss_pred ---cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 209 ---ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 209 ---~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
.+......++.++ +.+++.++.+++++.+|++.|.+++.+.+||+| +|.
T Consensus 71 ~~~~~~~~~~~~v~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~ 122 (135)
T cd04586 71 LAAAFVRSHGRKVADV--MTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGR 122 (135)
T ss_pred HHHHHHHhcCCCHHHH--hCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCE
Confidence 0001123456664 777899999999999999999999999999999 664
No 123
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.72 E-value=1.8e-07 Score=71.08 Aligned_cols=95 Identities=22% Similarity=0.301 Sum_probs=74.7
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.+|++.|. .+...+||..++. ++.+|++|..|+++++...... .++.++
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~------------~~~~G~v~~~~l~~~~~~~~~~------~~~~~~-- 62 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDGDL------------DNIIGVVHVKDLLRALAEGEED------LDLRDL-- 62 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECCCC------------ceEEEEEEHHHHHHHHHcCCCc------CCHHHH--
Confidence 678999999999999998 5778888853320 2446999999999987543211 234443
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+ +++.++.+++++.+|++.|.+++.+.+||+|++|.
T Consensus 63 ~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~ 98 (111)
T cd04590 63 L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGG 98 (111)
T ss_pred h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCC
Confidence 3 46889999999999999999999999999998774
No 124
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.72 E-value=1.8e-07 Score=71.13 Aligned_cols=97 Identities=24% Similarity=0.326 Sum_probs=77.0
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+..+++|. +++ ++.+|+|+..++.+++...... ...++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-d~~------------~~~~G~v~~~~i~~~~~~~~~~----~~~~v~~~-- 64 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRKGLGMTAVV-DED------------GRLVGIFTDGDLRRALEKGLDI----LTLPVADV-- 64 (114)
T ss_pred ccccCCCCcHHHHHHHHHhcCccEEEEE-cCC------------CCEEEEechHHHHHHHhccCcc----ccCCHHHh--
Confidence 467899999999999887 567788885 322 2446999999999988654321 12356664
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+++.++.+++++.+|++.|..++...+||++++|.
T Consensus 65 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~ 101 (114)
T cd04604 65 MTRNPKTIDPDALAAEALELMEENKITALPVVDDNGR 101 (114)
T ss_pred hccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCC
Confidence 7778899999999999999999999999999997664
No 125
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.72 E-value=1.5e-07 Score=74.33 Aligned_cols=99 Identities=18% Similarity=0.345 Sum_probs=76.3
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccch------------
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELK------------ 211 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~------------ 211 (262)
+.++.+++++.++++.|. .+++++||. +++ ++.+|++++.|+++++........
T Consensus 3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (132)
T cd04636 3 VITVKKDDTLRDVVEILLTGKISGVPVV-DNE------------GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDE 69 (132)
T ss_pred CeEeCCCCcHHHHHHHHHHhCCCccceE-CCC------------CCEEEEEeHHHHHHHHhccCCcccccccccccccch
Confidence 467999999999999987 688899995 322 234699999999998865422110
Q ss_pred ----hhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022 212 ----DITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG 259 (262)
Q Consensus 212 ----~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g 259 (262)
.+...++.+ ++.+++..+.+++++.+|+++|.+.+...+||+|+ |
T Consensus 70 ~~~~~~~~~~v~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~ 118 (132)
T cd04636 70 SKIKKLLGKKVEE--IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-G 118 (132)
T ss_pred HHHHHHcCCCHHH--hccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-C
Confidence 011125555 36778999999999999999999999999999987 5
No 126
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.72 E-value=2e-07 Score=70.63 Aligned_cols=95 Identities=20% Similarity=0.379 Sum_probs=76.8
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+..+.+++++.+++++|. .+.+.+||. ++ + +.+|++|..|+.++...... ...++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~--~-----------~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~-- 61 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVV-DD--G-----------RPLGIVTERDILRLLASGPD-----LQTPVGEV-- 61 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEe-eC--C-----------EEEEEEeHHHHHHHHhcCCC-----CCcCHHHh--
Confidence 467899999999999998 577788885 33 2 23599999999998865321 23456663
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.++++++.+++++.+|++.|.+.+...+||+|++|.
T Consensus 62 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~ 98 (111)
T cd04611 62 MSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGE 98 (111)
T ss_pred cCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCc
Confidence 7778999999999999999999999999999998764
No 127
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.72 E-value=2.1e-07 Score=85.92 Aligned_cols=144 Identities=15% Similarity=0.223 Sum_probs=109.1
Q ss_pred cccCCcchHHHHH--hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccc
Q 046022 11 SSAGKHAADENQR--LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQT 88 (262)
Q Consensus 11 ~~~~~~~~~~~~~--~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~ 88 (262)
.+..|...+.+.+ .|.+++|+|+|.....+..++.|++.++.++.+...-..++|+|..+-
T Consensus 181 ~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~----------------- 243 (423)
T COG4536 181 GSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL----------------- 243 (423)
T ss_pred cccccccHHHHhcccccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh-----------------
Confidence 3444545566654 358899999999989999999999999999999999999999997542
Q ss_pred cCcCCeEEEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCee
Q 046022 89 GAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRA 168 (262)
Q Consensus 89 ~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv 168 (262)
+.++|++-.+|+++.+.+.+++. + ..+..+.. . +|.+...++|.+-+..|.++-.|+
T Consensus 244 ----DnIiGvlh~r~llr~l~e~~~~~----------k---~d~~~~a~----e--pyFVPe~Tpl~~QL~~F~~~k~hi 300 (423)
T COG4536 244 ----DNIIGVLHVRDLLRLLNEKNEFT----------K---EDILRAAD----E--PYFVPEGTPLSDQLVAFQRNKKHI 300 (423)
T ss_pred ----hHhhhhhhHHHHHHHhhccCccc----------H---hHHHHHhc----C--CeecCCCCcHHHHHHHHHHhcceE
Confidence 56999999999999999744321 0 11222222 2 588999999999999998555666
Q ss_pred EeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022 169 LVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH 206 (262)
Q Consensus 169 ~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~ 206 (262)
.++.|+ .|...|++|-+||+.-+...
T Consensus 301 alVVDE------------YG~i~GLVTLEDIlEEIVGd 326 (423)
T COG4536 301 ALVVDE------------YGDIQGLVTLEDILEEIVGD 326 (423)
T ss_pred EEEEec------------cCcEEeeeeHHHHHHHHhcc
Confidence 554452 34556999999999866544
No 128
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.71 E-value=1.6e-07 Score=71.35 Aligned_cols=96 Identities=13% Similarity=0.209 Sum_probs=76.2
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+..++||. +++ ++..|++|..|+.+++.... .. ...++.+ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~------------~~~~G~v~~~~l~~~~~~~~-~~---~~~~v~~--~ 63 (114)
T cd04613 3 VVTIPEDTPLNELLDVIAHSPENNFPVV-DDD------------GRLVGIVSLDDIREILFDPS-LY---DLVVASD--I 63 (114)
T ss_pred ceeeCCCCcHHHHHHHHHhCCCcceeEE-CCC------------CCEEEEEEHHHHHHHHhccc-cc---ccEEHHH--h
Confidence 567999999999999998 577889985 432 23459999999998775421 11 1245666 4
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC-CC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS-SG 259 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~-~g 259 (262)
+++++.++.+++++.+|++.|...+.+.+||+|+ .|
T Consensus 64 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~ 100 (114)
T cd04613 64 MTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPG 100 (114)
T ss_pred ccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCC
Confidence 7888999999999999999999999999999987 54
No 129
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.71 E-value=2.3e-07 Score=71.02 Aligned_cols=96 Identities=21% Similarity=0.422 Sum_probs=73.4
Q ss_pred eEEeCCCCCHHHHHHHHh-cC-CCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhc
Q 046022 145 LWTLSPNTSILDCMEVFS-KG-IHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELG 222 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g-~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~ 222 (262)
+.++.++.++.++++.|. ++ ...++|. ++ ++..|++|..|+++++..... ....++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-------------~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~-- 62 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVV-EK-------------GRLLGIFTERDIVRLTAIGKD----LSDLPIGE-- 62 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEc-CC-------------CcEEEEEeHHHHHHHHhcCCC----ccccCHHH--
Confidence 467899999999999997 56 4456663 32 233599999999987754321 12345666
Q ss_pred ccCcCeEEEeCC--CcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 223 ALNENVFAITES--TKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 223 ~~~~~v~tv~~~--~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
++.+++.++.++ +++.+|+++|.+++...+||+|++|.
T Consensus 63 ~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~ 102 (115)
T cd04620 63 VMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQ 102 (115)
T ss_pred hcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCC
Confidence 477788899887 78999999999999999999998774
No 130
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.71 E-value=1.7e-07 Score=71.37 Aligned_cols=97 Identities=23% Similarity=0.351 Sum_probs=76.1
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. ++.++++|. ++ + +.+|+||..|+++.+... + ... ...++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~--~-----------~~~G~v~~~dl~~~~~~~-~-~~~-~~~~v~~i-- 63 (113)
T cd04587 3 PATVSPTTTVQEAAKLMREKRVSCVLVM-DG--N-----------KLVGIFTSKDIALRVVAQ-G-LDP-ESTLVERV-- 63 (113)
T ss_pred CeEeCCCCCHHHHHHHHHHcCCCeEEEE-EC--C-----------EEEEEEEhHHHHHHHHhc-C-CCc-CcCCHHHh--
Confidence 567899999999999987 677889885 32 2 235999999999766543 1 111 12457764
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+++.++.+++++.+|++.|.+++...+||++++|.
T Consensus 64 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~ 100 (113)
T cd04587 64 MTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQ 100 (113)
T ss_pred cCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCC
Confidence 7788999999999999999999999999999998764
No 131
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.71 E-value=1.6e-07 Score=70.75 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=72.1
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.+|++.|. ++.++++|. ++. ++.+|++|..||++... .++.+ +
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~-d~~------------g~~~Giv~~~dl~~~~~-----------~~~~~--~ 56 (106)
T cd04582 3 PITVRPDDPLSDALGLMDDSDLRALTVV-DAD------------GQPLGFVTRREAARASG-----------GCCGD--H 56 (106)
T ss_pred CcEecCCCcHHHHHHHHHhcCCCEEEEE-CCC------------CCEEEEEeHHHHHHhcc-----------cchhh--h
Confidence 467899999999999887 577888885 322 34469999999987421 13455 3
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+.+.++.+++++.+|+++|.+++++.+||+|++|.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~ 93 (106)
T cd04582 57 AEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGR 93 (106)
T ss_pred cccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCc
Confidence 6777888999999999999999999999999998764
No 132
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.71 E-value=7.4e-08 Score=91.54 Aligned_cols=107 Identities=20% Similarity=0.279 Sum_probs=85.4
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
+.+|+++|++ ..+ +.+++.++++.++++.|. +|..|+||. +++.+++ +|||+..|+++++..
T Consensus 190 ~~~v~diMtp-r~~--v~~l~~~~~~~e~~~~~~~~~~sR~PV~-~~~~d~i-----------vGiv~~kDll~~~~~-- 252 (408)
T TIGR03520 190 NTDTKQVMRP-RLD--IFALDIETSFSEIIPKIIENGYSRIPVY-KETIDNI-----------TGVLYIKDLLPHLNK-- 252 (408)
T ss_pred CCEeeeeCCc-hHh--EEEEECCCCHHHHHHHHHhCCCCEEEEE-cCCCCce-----------EEEEEHHHHHhHhcc--
Confidence 6789999983 223 789999999999999988 799999995 4333344 599999999987642
Q ss_pred ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT 261 (262)
Q Consensus 208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~ 261 (262)
+ ...++++ + +++.+|++++++.++++.|.+++..-.+|||+.|.+
T Consensus 253 ~------~~~l~~~--~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~ 297 (408)
T TIGR03520 253 K------NFDWQSL--L-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGT 297 (408)
T ss_pred C------CCCHHHH--c-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCE
Confidence 1 1234542 4 468899999999999999999999999999998864
No 133
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.71 E-value=1.6e-07 Score=71.32 Aligned_cols=91 Identities=18% Similarity=0.214 Sum_probs=74.0
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+.+.+||. ++. ++..|+|++.|+.+.. ...+++++
T Consensus 4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~~l~~~~----------~~~~v~~~-- 58 (108)
T cd04596 4 TGYLTTTDTVKDWHELNKETGHSRFPVV-DEK------------NKVVGIVTSKDVAGKD----------PDTTIEKV-- 58 (108)
T ss_pred cEEeCCCCCHHHHHHHHHHcCCCceeEE-CCC------------CeEEEEecHHHHhccc----------ccccHHHH--
Confidence 578999999999999998 577788885 422 2346999999997531 13456664
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+++.++.+++++.+|+++|.+++...+||+|++|.
T Consensus 59 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~ 95 (108)
T cd04596 59 MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKK 95 (108)
T ss_pred hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCC
Confidence 7778999999999999999999999999999998764
No 134
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.71 E-value=1.2e-07 Score=71.29 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=67.3
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.+|++.|. +++..+||. +++ ++.+|++|.+|+.+..
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~-d~~------------~~~~Giv~~~dl~~~~-------------------- 49 (96)
T cd04614 3 VPTVWEETPLPVAVRIMELANVKALPVL-DDD------------GKLSGIITERDLIAKS-------------------- 49 (96)
T ss_pred ccEeCCCCcHHHHHHHHHHcCCCeEEEE-CCC------------CCEEEEEEHHHHhcCC--------------------
Confidence 578999999999999998 688899995 322 2346999999998732
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
.+.++.+++++.+|+++|.++++..+||+|++|.
T Consensus 50 ---~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~ 83 (96)
T cd04614 50 ---EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDK 83 (96)
T ss_pred ---CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCc
Confidence 1789999999999999999999999999998653
No 135
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.70 E-value=1.6e-07 Score=72.60 Aligned_cols=101 Identities=15% Similarity=0.239 Sum_probs=76.8
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc-ch----hhhcccc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE-LK----DITSHSI 218 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~-l~----~l~~~ti 218 (262)
+.++.+++++.++++.|. .+.+++||+ ++. +..+|+++..|+++........ -. .....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 69 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVV-QKA------------GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTV 69 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEE-CCC------------CcEEEEEEcHHHHhhccccccccchhhhhhhccCcH
Confidence 578999999999999998 678899996 422 2446999999999864322100 00 0123456
Q ss_pred chhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 219 RELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 219 ~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
.+ ++.+++.++.+++++.+|+..|.+++.+.+||+|++|.
T Consensus 70 ~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~ 109 (122)
T cd04635 70 EK--IMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQ 109 (122)
T ss_pred HH--HhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCc
Confidence 65 36778999999999999999999999999999998764
No 136
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.70 E-value=2.4e-07 Score=71.03 Aligned_cols=95 Identities=20% Similarity=0.238 Sum_probs=75.3
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+..+.+++++.++++.|. .+.++++|. ++. ++.+|++|..|+.+.+.+... ....++.+ +
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~--~ 63 (115)
T cd04593 3 PPVLSATTPLREAAEQLIESKHGSALVV-DRD------------GGVVGIITLPDLLRALEADEA----GEPSAVDE--V 63 (115)
T ss_pred CcEeCCCCCHHHHHHHHHhCCCcEEEEE-cCC------------CCEEEEEEHHHHHHHHhcccc----cccccHHH--h
Confidence 467899999999999998 578899985 322 234699999999987754321 01223555 3
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS 258 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~ 258 (262)
+.+++.++.+++++.+|+++|.+++...+||+|++
T Consensus 64 ~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~ 98 (115)
T cd04593 64 ATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRG 98 (115)
T ss_pred ccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCC
Confidence 77889999999999999999999999999999887
No 137
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.69 E-value=7.8e-08 Score=93.47 Aligned_cols=109 Identities=16% Similarity=0.204 Sum_probs=81.4
Q ss_pred cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022 130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS 208 (262)
Q Consensus 130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~ 208 (262)
..|+++|.....+ ..++.|++++.+|+++|. ++...+||+.++. ++++++||||..||.+..
T Consensus 94 ~kVk~~~~g~i~~--~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~----------~~gkLvGIVT~~DLr~~~----- 156 (502)
T PRK07107 94 RRVKNYKAGFVVS--DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGT----------AHGKLLGIVTSRDYRISR----- 156 (502)
T ss_pred HHHHHHhcCCcCC--CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCC----------cCCEEEEEEEcHHhhccc-----
Confidence 3466666411112 257999999999999998 6888999964321 123456999999985321
Q ss_pred cchhhhccccchhcccCc--CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 209 ELKDITSHSIRELGALNE--NVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 209 ~l~~l~~~ti~eL~~~~~--~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
...+.++++ +|++ +++++++++++.+|+++|.++++..+||||++|.
T Consensus 157 ---~~~~~~V~d--IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~ 205 (502)
T PRK07107 157 ---MSLDTKVKD--FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGN 205 (502)
T ss_pred ---cCCCCCHHH--HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence 123567887 4885 7999999999999999999999999999998763
No 138
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.69 E-value=2.1e-07 Score=71.99 Aligned_cols=100 Identities=17% Similarity=0.310 Sum_probs=77.2
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccc----hh--hhccc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASEL----KD--ITSHS 217 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l----~~--l~~~t 217 (262)
+.++.+++++.++++.|. .++.++||. ++ ++ .+|++|+.|+.+.+....... .+ ....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~--~~-----------~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 68 (122)
T cd04637 3 VVTVEMDDRLEEVREIFEKHKFHHLLVV-ED--NE-----------LVGVISDRDYLKAISPFLGTAGETEKDLATLNRR 68 (122)
T ss_pred ceEeCCCCCHHHHHHHHHhCCCCEEEEE-eC--Ce-----------EEEEEEHHHHHHHHHHHhccccchHHHHHHHHhH
Confidence 578999999999999988 688899996 32 22 359999999999776422110 00 11234
Q ss_pred cchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 218 IRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 218 i~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+ ++.++++++.+++++.+|++.|.+++...+||+|++|+
T Consensus 69 ~~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~ 109 (122)
T cd04637 69 AHQ--IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQ 109 (122)
T ss_pred HHH--hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCC
Confidence 565 37788999999999999999999999999999988764
No 139
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.69 E-value=3.1e-07 Score=69.25 Aligned_cols=92 Identities=17% Similarity=0.309 Sum_probs=74.4
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+..+.+++++.++++.|. .+..+++|. ++. ++.+|++|..|++++.... .++.+ +
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~-d~~------------~~~~G~v~~~dl~~~~~~~---------~~v~~--~ 59 (109)
T cd04583 4 PVTITPDRTLAEAIKLMRDKKVDSLLVV-DKD------------NKLLGIVSLESLEQAYKEA---------KSLED--I 59 (109)
T ss_pred CEEECCCCCHHHHHHHHHHCCCceEEEE-cCC------------CcEEEEEEHHHHHHHhhcC---------CcHhH--h
Confidence 467899999999999998 578899985 322 2346999999998865321 24555 3
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
|.+.+.++++++++.+|+..|.+++...+||++++|+
T Consensus 60 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~ 96 (109)
T cd04583 60 MLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGK 96 (109)
T ss_pred hcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCe
Confidence 6778899999999999999999999999999998774
No 140
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.68 E-value=2.2e-07 Score=70.52 Aligned_cols=93 Identities=20% Similarity=0.296 Sum_probs=74.4
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+.+++||. ++ ++ ..|+++..|+++++... +.. ...++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~-~~--~~-----------~~G~v~~~~l~~~~~~~-~~~---~~~~i~~~-- 62 (111)
T cd04800 3 PVTCSPDTTIREAARLMTEHRVSSLLVV-DD--GR-----------LVGIVTDRDLRNRVVAE-GLD---PDTPVSEV-- 62 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEE-EC--CE-----------EEEEEEhHHHHHHHhcc-CCC---ccCCHHHH--
Confidence 577999999999999987 578899985 33 22 35999999999876543 111 12456663
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
+.+++.++++++++.+|++.|.+++.+.+||+++
T Consensus 63 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04800 63 MTAPPITIPPDATVFEALLLMLERGIHHLPVVDD 96 (111)
T ss_pred hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC
Confidence 7778999999999999999999999999999987
No 141
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.66 E-value=4e-07 Score=67.93 Aligned_cols=97 Identities=20% Similarity=0.357 Sum_probs=75.8
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+.+++||. +++ ++.+|+++..|+++++........ ..+.+ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~------------~~~~G~v~~~~l~~~~~~~~~~~~----~~~~~--~ 63 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVV-DDD------------GRLVGIVTERDLLRALAEGGLDPL----VTVGD--V 63 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEE-CCC------------CCEEEEEeHHHHHHHHHhccCCcc----ccHHH--H
Confidence 567899999999999988 577889885 322 244699999999998876432110 01333 3
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+..++.++.+++++.+|++.|.+.+.+.+||+|++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ 100 (113)
T cd02205 64 MTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGR 100 (113)
T ss_pred hcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 6678999999999999999999999999999998764
No 142
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.66 E-value=1.9e-07 Score=72.05 Aligned_cols=97 Identities=18% Similarity=0.263 Sum_probs=75.3
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc------chhhhccc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE------LKDITSHS 217 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~------l~~l~~~t 217 (262)
+.++.+++++.++++.|. ++.+++||. ++ + +.+|++|+.|+++++...... ..++...+
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~-~~--~-----------~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 68 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDISRLPVI-EG--G-----------KLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLP 68 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeeEEE-EC--C-----------EEEEEEchHHHHHhhhhhhhcccchhhhhhhhccC
Confidence 578999999999999887 688899995 32 1 335999999999877542211 01122345
Q ss_pred cchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 218 IRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 218 i~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
+.+ ++.+++.++.+++++.+|+++|.+.+.+.+||+|+
T Consensus 69 ~~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 106 (121)
T cd04633 69 VSD--IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD 106 (121)
T ss_pred HHH--HccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC
Confidence 555 37778999999999999999999999999999987
No 143
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.65 E-value=3.7e-07 Score=69.07 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=74.5
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+..+.+++++.++++.|. .+.+++||. ++ ++ .+|+++..|+.+...... .. ..++.+ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~--~~-----------~~G~v~~~dl~~~~~~~~--~~---~~~~~~--~ 61 (111)
T cd04612 3 VVTVPVDLTVDEVLALMFGERHRGYPVV-DD--GR-----------LVGIVTLADIRRVPAEGR--EA---TVLVGD--V 61 (111)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcceEe-eC--Ce-----------EEEEEEHHHHHHHHhcCc--cc---ccCHHH--h
Confidence 577999999999999988 678889885 33 22 359999999988664321 10 123444 3
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+++.++.+++++.++++.|.+++...+||+|++|.
T Consensus 62 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ 98 (111)
T cd04612 62 MTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGR 98 (111)
T ss_pred ccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCC
Confidence 7788999999999999999999999999999988654
No 144
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.63 E-value=5.9e-07 Score=68.27 Aligned_cols=95 Identities=18% Similarity=0.367 Sum_probs=74.8
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+.+.+||. +++ ++ +|++|..|+++++...... ....++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~--~~-----------~G~v~~~dl~~~~~~~~~~---~~~~~~~~~-- 63 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNIGRLIVV-DNE--KP-----------VGIITERDLVKKVVSRNLK---PREVPVGEV-- 63 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCCCEEEEE-ECC--EE-----------EEEEEHHHHHHHHhhccCC---cccCCHHHh--
Confidence 467899999999999988 577889985 322 23 4999999999977543110 123456664
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS 258 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~ 258 (262)
+.+++.++.+++++.+|++.|.+++...+||||++
T Consensus 64 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~ 98 (112)
T cd04802 64 MSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD 98 (112)
T ss_pred cCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC
Confidence 77789999999999999999999999999999864
No 145
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.63 E-value=3.6e-07 Score=70.07 Aligned_cols=100 Identities=19% Similarity=0.351 Sum_probs=76.5
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchh------hhccc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKD------ITSHS 217 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~------l~~~t 217 (262)
+.++.+++++.++++.|. .+...+||. ++ +++ +|++|..|+.++.......... ....+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-d~--~~~-----------~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 68 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENSIRRLPVV-DR--GKL-----------VGIVTDRDLKLASPSKATTLDIWELYYLLSKIK 68 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCCcceeeEe-cC--CeE-----------EEEEeHHHHHHhhhcccccccchhhhhhhcccC
Confidence 467899999999999988 577899995 43 233 4999999999887542211110 11234
Q ss_pred cchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 218 IRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 218 i~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+ ++.+++.++.+++++.++++.|.+++.+.+||+|++|.
T Consensus 69 ~~~--~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~ 109 (122)
T cd04585 69 VSD--IMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGR 109 (122)
T ss_pred HHH--hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCc
Confidence 555 47778999999999999999999999999999998664
No 146
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.62 E-value=6.8e-07 Score=69.90 Aligned_cols=98 Identities=19% Similarity=0.284 Sum_probs=75.1
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc--c-------chhhh
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS--E-------LKDIT 214 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~--~-------l~~l~ 214 (262)
+..+.+++++.+|+++|. .+.+.+||+.++ ++..|+||..|+.+++..... . .....
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-------------~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 69 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVVDDN-------------GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERML 69 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-------------CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhc
Confidence 567899999999999998 688899995332 234599999999987643210 0 11123
Q ss_pred ccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 215 SHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 215 ~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
..++.+ ++.++++++.++.++.+|++.|.+++...+||++.
T Consensus 70 ~~~~~~--~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~ 110 (128)
T cd04632 70 DLPVYD--AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTP 110 (128)
T ss_pred cCcHHH--HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEecc
Confidence 345666 48888999999999999999999999999999953
No 147
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.60 E-value=5.1e-07 Score=68.53 Aligned_cols=92 Identities=15% Similarity=0.278 Sum_probs=74.1
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.++.++.++++.|. ++..++||. +++ ..+|+++..|+.+.+.... ...++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~~-------------~~~G~v~~~dl~~~~~~~~------~~~~~~~~-- 61 (110)
T cd04595 4 VKTVRPEATIEEARELLLRYGHTALPVV-EGG-------------RVVGIISRRDVEKALRHGL------GHAPVKDY-- 61 (110)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCeeeEe-eCC-------------EEEEEEEHHHHHHHHhccc------ccCcHHHH--
Confidence 578899999999999998 577789985 331 2359999999988763321 24566764
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG 259 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g 259 (262)
+.+++.++.+++++.+|+.+|.+++...+||++ +|
T Consensus 62 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~ 96 (110)
T cd04595 62 MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DG 96 (110)
T ss_pred hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CC
Confidence 778899999999999999999999999999998 44
No 148
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.60 E-value=6.4e-07 Score=68.10 Aligned_cols=94 Identities=15% Similarity=0.342 Sum_probs=73.1
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+.+.++|. ++ ++.+|++|..|+++++...... ....++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~-~~-------------~~~~G~v~~~dl~~~~~~~~~~---~~~~~v~~~-- 63 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVM-ER-------------GELVGLLTFREVLQAMAQHGAG---VLDTTVRAI-- 63 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEe-eC-------------CEEEEEEEHHHHHHHHHhcCCc---hhcCCHHHH--
Confidence 467999999999999987 466666663 32 2345999999999987653111 123457764
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
+++++.++.+++++.+|+++|.+++...+||+|+
T Consensus 64 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~ 97 (112)
T cd04625 64 MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG 97 (112)
T ss_pred hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC
Confidence 7778899999999999999999999999999984
No 149
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.60 E-value=2.5e-07 Score=91.45 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=84.6
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
..+|+++|.. + +.++++++++.++++.|. ++.+.+||+ |++ ++..|+||..|+.+.+....
T Consensus 446 ~~~V~dim~~---~--~~~v~~~~tl~ea~~~l~~~~~~~~~Vv-D~~------------g~lvGiVt~~dL~~~l~~~~ 507 (574)
T PRK01862 446 TTQMRELIQP---A--QTVVPPTASVADMTRVFLEYPVKYLYVV-DDD------------GRFRGAVALKDITSDLLDKR 507 (574)
T ss_pred hCcHHHHhcC---C--CceeCCCCCHHHHHHHHHhCCCceEEEE-cCC------------CeEEEEEEHHHHHHHhhccc
Confidence 4689999973 2 467999999999999988 678889986 322 23459999999998664432
Q ss_pred ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG 259 (262)
Q Consensus 208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g 259 (262)
+ ....++.+ +|++++.++++++++.+|+++|.+++...+||||++|
T Consensus 508 ~----~~~~~v~d--im~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~ 553 (574)
T PRK01862 508 D----TTDKTAAD--YAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEA 553 (574)
T ss_pred c----cccchHHH--hccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCC
Confidence 1 11245666 4888899999999999999999999999999999875
No 150
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.60 E-value=2.5e-07 Score=84.23 Aligned_cols=108 Identities=23% Similarity=0.336 Sum_probs=83.4
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
..+|+++|.. +.. +.++.+++++.++++.|. .+..|+||. ++..++ ++|+|+-.|+++++....
T Consensus 66 ~~~V~diMtp--r~~-i~~l~~~~sl~e~~~~i~~~~~sr~PV~-~~~~d~-----------iiGiv~~kDll~~~~~~~ 130 (292)
T PRK15094 66 DQRVRDIMIP--RSQ-MITLKRNQTLDECLDVIIESAHSRFPVI-SEDKDH-----------IEGILMAKDLLPFMRSDA 130 (292)
T ss_pred CCEEeEEccc--hHH-EEEEeCCCCHHHHHHHHHhcCCcEEEEe-cCCCCc-----------EEEEEEHHHHHhHhhccC
Confidence 4589999972 222 789999999999999887 688999996 433223 359999999998764211
Q ss_pred ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
. ..++.++ +. +++++.+++++.+|++.|.+++...++|||+.|.
T Consensus 131 ~------~~~l~~l--~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~ 174 (292)
T PRK15094 131 E------AFSMDKV--LR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGG 174 (292)
T ss_pred C------cCCHHHH--cC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 1 1235553 54 4568999999999999999999999999998775
No 151
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.59 E-value=7.1e-07 Score=67.85 Aligned_cols=96 Identities=19% Similarity=0.369 Sum_probs=74.3
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHH-HHHHhhcccchhhhccccchhc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLL-RFMMNHASELKDITSHSIRELG 222 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIi-r~L~~~~~~l~~l~~~ti~eL~ 222 (262)
+.++.+++++.+|++.|. ++.+.+||. ++ ++ ..|++|..|++ +.+..... ....++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~-~~--~~-----------~~G~i~~~~l~~~~~~~~~~----~~~~~~~~~- 63 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVC-EN--DR-----------LVGIVTDRDIVVRAVAEGRD----PDTTTVGDV- 63 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEe-eC--CE-----------EEEEEEhHHHHHHHhhccCC----cccCCHHHh-
Confidence 577999999999999998 678889985 33 22 35999999997 34433211 112246664
Q ss_pred ccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 223 ALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 223 ~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
|.+.+.++.+++++.+|++.|..++...+||+|++|.
T Consensus 64 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~ 100 (113)
T cd04622 64 -MTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGR 100 (113)
T ss_pred -ccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCc
Confidence 7778999999999999999999999999999987664
No 152
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.55 E-value=9.8e-07 Score=67.89 Aligned_cols=98 Identities=20% Similarity=0.316 Sum_probs=75.3
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccc-----hhhhcccc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASEL-----KDITSHSI 218 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l-----~~l~~~ti 218 (262)
+.++.+++++.+|++.|. .+..++||. +++ ++.+|++++.|++++........ ......++
T Consensus 3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v 69 (121)
T cd04584 3 VVTITPTTTIAEALELMREHKIRHLPVV-DEE------------GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPV 69 (121)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCcccEE-CCC------------CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCH
Confidence 577899999999999988 577788885 332 23469999999998765432111 01223456
Q ss_pred chhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 219 RELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 219 ~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
.++ +.+++.++.+++++.+|++.|.+.+...+||+|+
T Consensus 70 ~~~--~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~ 106 (121)
T cd04584 70 KEI--MTKDVITVHPLDTVEEAALLMREHRIGCLPVVED 106 (121)
T ss_pred HHH--hhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC
Confidence 664 7778999999999999999999999999999986
No 153
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.54 E-value=3.1e-07 Score=72.30 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=75.8
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. +++.++||. +++ +..+|+||..|+++.+...... ...+++++
T Consensus 4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vv-d~~------------~~~~Gii~~~dl~~~~~~~~~~----~~~~v~~i-- 64 (124)
T cd04608 4 PVTVLPTVTCAEAIEILKEKGFDQLPVV-DES------------GKILGMVTLGNLLSSLSSGKVQ----PSDPVSKA-- 64 (124)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEE-cCC------------CCEEEEEEHHHHHHHHHHhccC----CCCcHHHH--
Confidence 578999999999999998 688899995 322 2345999999999877653211 24578874
Q ss_pred cCcCeEEEeCCCcHHHHHHHHH---------hCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMR---------AALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~---------~~~isav~VVd~~g~ 260 (262)
|++++.++++++++.+|.++|. +.+..++||+|++|.
T Consensus 65 m~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 110 (124)
T cd04608 65 LYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEK 110 (124)
T ss_pred hhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccc
Confidence 9999999999999999999653 336788999987664
No 154
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.53 E-value=1.4e-06 Score=66.14 Aligned_cols=93 Identities=19% Similarity=0.266 Sum_probs=73.5
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. ++...++|. +++ + ..|+++..|+++.+..... ....++.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-d~~--~-----------~~G~v~~~~l~~~~~~~~~----~~~~~i~~~-- 62 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVR-DGD--P-----------RLGIVTRTDLLDAVLLDGL----PSSTPVGEI-- 62 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEe-cCC--e-----------EEEEEEHHHHHHHHHcCCC----CCCCCHHHH--
Confidence 467899999999999998 577788885 331 2 3599999999987653211 123456764
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
+.+++.++++++++.+++++|.+++...+||+|+
T Consensus 63 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 96 (111)
T cd04589 63 ATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG 96 (111)
T ss_pred hCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC
Confidence 7788999999999999999999999999999985
No 155
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.53 E-value=3.7e-07 Score=88.05 Aligned_cols=107 Identities=17% Similarity=0.297 Sum_probs=85.5
Q ss_pred hccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhh
Q 046022 128 MSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNH 206 (262)
Q Consensus 128 ~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~ 206 (262)
+.+.|.+++.. . .++++|.+|+.+|...|. .|+..+.+. ++. ++..||||.+|+.++....
T Consensus 147 ~~trv~~~~~~---~--~~~v~~~~~i~~aa~km~~~gv~s~v~l-~~~------------~~~~GIvT~~dl~~~v~~~ 208 (610)
T COG2905 147 ILTRVGEVKTL---P--AVTVSPQASIQDAARKMKDEGVSSLVVL-DDS------------GPLLGIVTRKDLRSRVIAD 208 (610)
T ss_pred HHHHHHHHhcC---C--CcccCccCcHHHHHHHHHhcCCCeEEEE-cCC------------CCccceeehHHHHHHHHhc
Confidence 35577788873 2 478999999999999887 799966664 432 2345999999999887664
Q ss_pred cccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCC
Q 046022 207 ASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSS 258 (262)
Q Consensus 207 ~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~ 258 (262)
... ...+++++ |+.|+++|...+.+-||+-+|..++|..+||++++
T Consensus 209 g~~----~~~~V~ev--mT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~g 254 (610)
T COG2905 209 GRS----KTQKVSEV--MTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTEDG 254 (610)
T ss_pred CCC----cccchhhh--hccCceeecCcchHHHHHHHHHHhCCceeeeecCC
Confidence 211 14678884 99999999999999999999999999999999875
No 156
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.50 E-value=7.8e-07 Score=86.09 Aligned_cols=102 Identities=17% Similarity=0.296 Sum_probs=81.8
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
..++.++|.. + +.++.+++++.+++++|. +++..+||+ +++ ++.+||||..|+.. +
T Consensus 88 ~VKv~~iMi~---~--pvtv~~d~tv~eA~~~m~~~~~s~l~VV-D~~------------gklvGIVT~rDL~~-~---- 144 (479)
T PRK07807 88 WVKSRDLVFD---T--PVTLSPDDTVGDALALLPKRAHGAVVVV-DEE------------GRPVGVVTEADCAG-V---- 144 (479)
T ss_pred hccccccccc---C--CeEECCCCCHHHHHHHHHhcCCceEEEE-CCC------------CeEEEEEeHHHHhc-C----
Confidence 4567888862 3 588999999999999998 688899995 322 23469999999832 1
Q ss_pred ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
. ...++++ +|+++++++++++++.+|+++|.++++..+||||++|.
T Consensus 145 ~-----~~~~V~d--iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~ 190 (479)
T PRK07807 145 D-----RFTQVRD--VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGR 190 (479)
T ss_pred c-----cCCCHHH--hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCe
Confidence 1 1245777 48899999999999999999999999999999998764
No 157
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.50 E-value=1e-06 Score=66.35 Aligned_cols=94 Identities=15% Similarity=0.309 Sum_probs=72.2
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. ++.+++||. ++ + +++|++|+.|+.+++......+ ..++.+ +
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~-~~--~-----------~~~G~v~~~dl~~~~~~~~~~~----~~~~~~--~ 62 (110)
T cd04609 3 VVSVAPDDTVSQAIERMREYGVSQLPVV-DD--G-----------RVVGSIDESDLLDALIEGKAKF----SLPVRE--V 62 (110)
T ss_pred cEEECCCCcHHHHHHHHHHcCCceeeEe-eC--C-----------eeEEEEeHHHHHHHHhcccccc----CcCHHH--H
Confidence 577999999999999998 688899995 32 1 2359999999999876532211 234555 3
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+++.++++++++.+|+++|.+. ..+|||+++|.
T Consensus 63 ~~~~~~~v~~~~~l~~~~~~~~~~--~~~~vv~~~~~ 97 (110)
T cd04609 63 MGEPLPTVDPDAPIEELSELLDRG--NVAVVVDEGGK 97 (110)
T ss_pred hcCCCceeCCCCcHHHHHHHHHhC--CceeEEecCCe
Confidence 777899999999999999999883 34789988764
No 158
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.49 E-value=6.8e-07 Score=78.00 Aligned_cols=155 Identities=16% Similarity=0.331 Sum_probs=112.7
Q ss_pred hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022 24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD 103 (262)
Q Consensus 24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D 103 (262)
.....+|+|+|++...+++++.+.++.+.+..+.+...++.||+.++ ++.+.||+-..|
T Consensus 63 ~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~ed---------------------kD~v~GIL~AKD 121 (293)
T COG4535 63 DIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED---------------------KDHVEGILLAKD 121 (293)
T ss_pred HHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCC---------------------chhhhhhhhHHH
Confidence 34678899999998999999999999999999999999999999765 368999999999
Q ss_pred HHHHHhCCCC-CCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCccccc
Q 046022 104 ILAHIAGDDQ-MNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISG 181 (262)
Q Consensus 104 il~~l~~~~~-l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g 181 (262)
++.|+..+.. + .+.+++. . .+.|.+.-.+...++-|. +..|-..|+ |.-
T Consensus 122 LL~~~~~~~~~F----------------~i~~lLR----P--av~VPESKrvd~lLkeFR~~RnHMAIVi-DEf------ 172 (293)
T COG4535 122 LLPFMRSDAEPF----------------DIKELLR----P--AVVVPESKRVDRLLKEFRSQRNHMAIVI-DEF------ 172 (293)
T ss_pred HHHHhcCCcccc----------------cHHHhcc----c--ceecccchhHHHHHHHHHhhcCceEEEE-ecc------
Confidence 9999876432 2 2556654 1 356788888888888888 677766664 421
Q ss_pred ceecccCCeeeEecHHHHHHHHHhhc-ccchhhhccccchhcccCcCeEEEeCCCcH
Q 046022 182 VELVESASSYQMLTQMDLLRFMMNHA-SELKDITSHSIRELGALNENVFAITESTKV 237 (262)
Q Consensus 182 ~~~~~~~~~~giITqsDIir~L~~~~-~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~ 237 (262)
|...|+||-+||+.-+...+ +++..-....|.. .++.-.+|.+=+++
T Consensus 173 ------GgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~---ls~~~~~VrALT~I 220 (293)
T COG4535 173 ------GGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQ---LSRHTWRVRALTEI 220 (293)
T ss_pred ------CCeeeeEEHHHHHHHHhcccccccchhhhhhhHh---hcCCceEEEecccH
Confidence 22359999999999887765 3332211222444 34445555555443
No 159
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.48 E-value=6.6e-07 Score=70.10 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=70.0
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHH-----Hhhcccchhhhcccc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFM-----MNHASELKDITSHSI 218 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L-----~~~~~~l~~l~~~ti 218 (262)
+.++.+++++.++++.|. .+.+.++|. ++. ++.+|++|..|+.+.. ... +. .....++
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~-d~~------------~~~~Giv~~~dl~~~~~~~~~~~~-~~--~~~~~~v 66 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVV-DSD------------DNFIGVITAVDLLGEEPIKRIQEG-GI--SRSELTV 66 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEE-cCC------------CcEEEEEEHHHHhhChhhHHHHHc-CC--CchheEH
Confidence 478999999999999998 677888885 422 2345999999998632 221 00 1123456
Q ss_pred chhcccCcCeE--EEe----CCCcHHHHHHHHHhCCCcEEEEEcCC
Q 046022 219 RELGALNENVF--AIT----ESTKVIDAIKCMRAALLHAVPIVKSS 258 (262)
Q Consensus 219 ~eL~~~~~~v~--tv~----~~~~~~~A~~lM~~~~isav~VVd~~ 258 (262)
++ +|+++.. .+. +++++.+|++.|.+++.+.+||||++
T Consensus 67 ~~--im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~ 110 (126)
T cd04640 67 AD--VMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDRE 110 (126)
T ss_pred HH--hcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECC
Confidence 66 4775543 343 68899999999999999999999986
No 160
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.46 E-value=1.6e-06 Score=64.99 Aligned_cols=87 Identities=15% Similarity=0.268 Sum_probs=70.7
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+.+.+||. ++ ++ .+|++|..|++++. ...++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~--~~-----------~~Giv~~~~l~~~~----------~~~~~~~~-- 56 (105)
T cd04599 3 PITIDPLDSVGRAARLMEKHRIGGLPVV-ED--GK-----------LVGIITSRDVRRAH----------PNRLVADA-- 56 (105)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEE-EC--CE-----------EEEEEehHHhhccc----------ccCCHHHH--
Confidence 467899999999999988 577889985 32 12 35999999998732 12345553
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
+.+++.++.+++++.+|++.|.+++...+||+|+
T Consensus 57 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~ 90 (105)
T cd04599 57 MTREVVTISPEASLLEAKRLMEEKKIERLPVLRE 90 (105)
T ss_pred ccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC
Confidence 7778999999999999999999999999999987
No 161
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.43 E-value=2.6e-06 Score=68.52 Aligned_cols=97 Identities=20% Similarity=0.347 Sum_probs=74.8
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc--cc-----------
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS--EL----------- 210 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~--~l----------- 210 (262)
+.++.+++++.++++.|. .+...+||+.+ ++ .+|++|..|+.+++..... ..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~-----------~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 68 (143)
T cd04634 3 PITCNADDTISDAARLLRENKISGAPVLDG---GK-----------LVGIVSESDILKLLVTHDPSGNLWLPSPLELIEL 68 (143)
T ss_pred cEEecCCCCHHHHHHHHHHcCCCcceEeEC---Ce-----------EEEEecHHHHHHHHHhccCccccccCCcceeeec
Confidence 578999999999999988 68889999633 23 3599999999998864321 00
Q ss_pred ---------------hhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 211 ---------------KDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 211 ---------------~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
......++.+ ++.+++.++.+++++.+|++.|.+++.+.+||+++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~ 128 (143)
T cd04634 69 PLREFINWEETKRALTDAGKMKVRD--IMTKKVITISPDASIEDAAELMVRHKIKRLPVVED 128 (143)
T ss_pred cchheeehHHHHHHHHHHhcCCHHH--HcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence 0012334555 36778999999999999999999999999999987
No 162
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.43 E-value=1.2e-06 Score=72.12 Aligned_cols=103 Identities=21% Similarity=0.332 Sum_probs=82.1
Q ss_pred cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022 130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS 208 (262)
Q Consensus 130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~ 208 (262)
.....+|+ + + ++.+.|++++.+++.+|. +|+..+||. ++ ++++|-||..||++.+.+..
T Consensus 65 ita~~iM~-s--p--vv~v~pdDsi~~vv~lM~~~g~SQlPVi-~~-------------~k~VGsItE~~iv~~~le~~- 124 (187)
T COG3620 65 ITAKTIMH-S--P--VVSVSPDDSISDVVNLMRDKGISQLPVI-EE-------------DKVVGSITENDIVRALLEGM- 124 (187)
T ss_pred EeHhhhcc-C--C--eeEECchhhHHHHHHHHHHcCCccCcee-eC-------------CeeeeeecHHHHHHHHhccc-
Confidence 45678897 3 3 799999999999999999 899999995 43 23469999999999987753
Q ss_pred cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022 209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG 259 (262)
Q Consensus 209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g 259 (262)
..+...++++ +|..+..+|++++++....+++..+ .||-|+ ++|
T Consensus 125 --e~i~~~~vr~--vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G 168 (187)
T COG3620 125 --ESIRSLRVRE--VMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENG 168 (187)
T ss_pred --cchhhhhHHH--HhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCC
Confidence 3344556666 5999999999999999888888775 578888 444
No 163
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.42 E-value=1.8e-06 Score=65.54 Aligned_cols=88 Identities=15% Similarity=0.283 Sum_probs=68.6
Q ss_pred eCCCCCHHHHHHHHh-cC-----CCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchh
Q 046022 148 LSPNTSILDCMEVFS-KG-----IHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIREL 221 (262)
Q Consensus 148 v~~~~sL~~a~~~m~-~g-----~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL 221 (262)
+.+++++.++++.|. .+ +..+||+ ++. ++.+|+||..|+++. . .+.+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv-d~~------------~~~~G~v~~~~l~~~-----~-----~~~~v~~~ 58 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVV-DEE------------GRLLGVVSLRDLLLA-----D-----PDTPVSDI 58 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEE-CCC------------CCEEEEEEHHHHhcC-----C-----CcchHHHH
Confidence 578999999999997 34 3567775 322 234599999999762 1 13456664
Q ss_pred cccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 222 GALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 222 ~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+++.++.+++++.++++.|.+++...+||+|++|.
T Consensus 59 --~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~ 95 (109)
T cd04606 59 --MDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGR 95 (109)
T ss_pred --hCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCc
Confidence 7778999999999999999999999999999998764
No 164
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.42 E-value=2.2e-06 Score=64.48 Aligned_cols=90 Identities=18% Similarity=0.365 Sum_probs=72.4
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+..++||. ++ ++ .+|+++..|+++. . ...+++++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~-d~--~~-----------~~g~v~~~~l~~~---~-------~~~~~~~~-- 57 (107)
T cd04610 4 VITVSPDNTVKDVIKLIKETGHDGFPVV-DN--GK-----------VVGIVSARDLLGK---D-------PDETVEEI-- 57 (107)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeeeEe-EC--CE-----------EEEEEEHHHhhcc---C-------ccccHHHh--
Confidence 577999999999999987 566788885 32 22 3599999999752 1 12456664
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+.+.++.+++++.+|+++|.+++...+||++++|.
T Consensus 58 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~ 94 (107)
T cd04610 58 MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNN 94 (107)
T ss_pred CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCe
Confidence 7778899999999999999999999999999998874
No 165
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.41 E-value=3e-06 Score=64.93 Aligned_cols=95 Identities=19% Similarity=0.296 Sum_probs=70.9
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. ++...++|+ ++.. .+++.+|++|..|++... . . ..++++ +
T Consensus 4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~-d~~~---------~~~~~~G~v~~~dl~~~~-~--~------~~~v~~--~ 62 (114)
T cd04602 4 PSVLSPDHTVADVLEIKEKKGFSGIPVT-EDGK---------SGGKLLGIVTSRDIDFLT-D--S------ETPLSE--V 62 (114)
T ss_pred CeEcCCCCCHHHHHHHHHHcCCCceEEe-eCCC---------cCCEEEEEEEhHHhhhhh-c--c------CCCHHH--h
Confidence 467899999999999998 577788885 3210 012346999999986421 1 1 134665 4
Q ss_pred cCcCeEEEeC--CCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITE--STKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~--~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+...++.. ++++.+|++.|.+++...+||||++|.
T Consensus 63 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~ 101 (114)
T cd04602 63 MTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGE 101 (114)
T ss_pred cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCe
Confidence 7766777766 999999999999999999999998763
No 166
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.39 E-value=1.7e-06 Score=83.74 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=79.2
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
..++.++|.. + +.++.+++++.+++++|. .+++.++|. +++ +++||||.+|+.. .
T Consensus 87 ~VKv~eim~~---~--pvtv~p~~tI~eA~~lm~~~~~~~~vVv-D~g-------------klvGIVT~rDL~~-~---- 142 (475)
T TIGR01303 87 FVKSRDLVLD---T--PITLAPHDTVSDAMALIHKRAHGAAVVI-LED-------------RPVGLVTDSDLLG-V---- 142 (475)
T ss_pred hcchhhcccc---C--CeEECCCCCHHHHHHHHHhcCCeEEEEE-ECC-------------EEEEEEEHHHhhc-C----
Confidence 4567788762 3 578999999999999998 567677774 321 2359999999832 1
Q ss_pred ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
. ...++++ +|+++++++++++++.+|+++|.++++..+||||++|.
T Consensus 143 ~-----~~~~V~d--IMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~ 188 (475)
T TIGR01303 143 D-----RFTQVRD--IMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGT 188 (475)
T ss_pred C-----CCCCHHH--HccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence 1 1245777 48999999999999999999999999999999998764
No 167
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.37 E-value=2.3e-06 Score=83.40 Aligned_cols=95 Identities=14% Similarity=0.183 Sum_probs=75.6
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.+++++|. .++..+||+.+++ .+++++||||..||.+ +. ..+.+++++
T Consensus 110 pvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~----------~~GklvGIVT~~DL~~-v~--------~~~~~V~eI-- 168 (505)
T PLN02274 110 PVVKSPSSTISSLDELKASRGFSSVCVTETGT----------MGSKLLGYVTKRDWDF-VN--------DRETKLSEV-- 168 (505)
T ss_pred CeeeCCCCcHHHHHHHHHhcCCceEEEEeCCC----------cCCeEEEEEEHHHHhh-cc--------ccCCcHHHH--
Confidence 578999999999999998 6888999963321 0134569999999853 21 124567874
Q ss_pred cCcC--eEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNEN--VFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~--v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
|+++ ++++.+++++.+|+++|.++++..+||||++|.
T Consensus 169 Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~ 207 (505)
T PLN02274 169 MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGE 207 (505)
T ss_pred hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCe
Confidence 8765 899999999999999999999999999997763
No 168
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.37 E-value=1.2e-06 Score=59.41 Aligned_cols=56 Identities=27% Similarity=0.467 Sum_probs=45.5
Q ss_pred cccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHh
Q 046022 132 VSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMN 205 (262)
Q Consensus 132 V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~ 205 (262)
|+++|.. + +.++.+++++.++++.|. ++++++||. +++ ++.+|+||.+||++++..
T Consensus 1 v~~~m~~---~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 1 VGDIMTP---P--PITVSPDDSLEEALEIMRKNGISRLPVV-DED------------GKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HHHHSBS---S--SEEEETTSBHHHHHHHHHHHTSSEEEEE-STT------------SBEEEEEEHHHHHHHHHG
T ss_pred CeECCcC---C--CEEEcCcCcHHHHHHHHHHcCCcEEEEE-ecC------------CEEEEEEEHHHHHhhhhC
Confidence 4678872 3 689999999999999998 799999996 432 344699999999999863
No 169
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.34 E-value=2.9e-06 Score=82.55 Aligned_cols=95 Identities=22% Similarity=0.423 Sum_probs=75.9
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
++++.|++++.+++++|. .++.++||+.++.. +++.+||||..|+. +... ...+++++
T Consensus 106 pvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~----------~gkLvGIVt~~DL~-~~~~--------~~~~V~di-- 164 (495)
T PTZ00314 106 PYVLSPNHTVADVLEIKEKKGFSSILITVDGKV----------GGKLLGIVTSRDID-FVKD--------KSTPVSEV-- 164 (495)
T ss_pred CeecCCCCCHHHHHHHHHHcCCcEEEEEeCCcc----------CCeEEEEEEHHHHh-hccc--------CCCCHHHh--
Confidence 478999999999999998 68899999643210 13456999999986 2211 13567774
Q ss_pred cCc--CeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNE--NVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~--~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
|++ +++++.+++++.+|+++|.++++..+||||++|.
T Consensus 165 Mt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~ 203 (495)
T PTZ00314 165 MTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGE 203 (495)
T ss_pred hCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCc
Confidence 876 8999999999999999999999999999998764
No 170
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.34 E-value=4e-06 Score=63.24 Aligned_cols=92 Identities=20% Similarity=0.312 Sum_probs=70.5
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+..+++|. +++ ++.+|++|..|+.+... ...++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-d~~------------~~~~G~v~~~~l~~~~~---------~~~~v~~~-- 59 (110)
T cd04601 4 PITVSPDATVAEALELMAEYGISGLPVV-DDD------------GKLVGIVTNRDLRFETD---------LDKPVSEV-- 59 (110)
T ss_pred CeEeCCCCcHHHHHHHHHHcCCceEEEE-cCC------------CEEEEEEEhhHeeeccc---------CCCCHHHh--
Confidence 467899999999999887 577789985 322 23469999999864210 13456664
Q ss_pred cCcCeEEEeC-CCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LNENVFAITE-STKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~~~v~tv~~-~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+.+.+..+.. ++++.+|++.|.+.+.+.+||+|++|.
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~ 97 (110)
T cd04601 60 MTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGK 97 (110)
T ss_pred cccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCC
Confidence 6665666666 999999999999999999999998764
No 171
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.34 E-value=3.8e-06 Score=64.48 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=73.7
Q ss_pred eEEeCCCCCHHHHHHHHh-cC-CCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhc
Q 046022 145 LWTLSPNTSILDCMEVFS-KG-IHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELG 222 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g-~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~ 222 (262)
+.++.+++++.++++.|. ++ .+++||+.+ ++ .+|+++..|+.+++..... .......++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~---~~-----------~~G~v~~~~l~~~~~~~~~-~~~~~~~~v~~~- 66 (119)
T cd04598 3 APTVSPDTTVNDVLERFERDPDLSALAVVDD---GR-----------PVGLIMREALMELLSTPYG-RALYGKKPVSEV- 66 (119)
T ss_pred cCccCCCCcHHHHHHHHHhCCCccEEEEEEC---Ce-----------eEEEEEHHHHHHHHhchhh-HHHHcCCcHHHh-
Confidence 456899999999999997 55 788988533 23 3599999999987654211 011123467764
Q ss_pred ccCcCeEEEeCCCcHHHHHHHHHhCCC---cEEEEEcCCCC
Q 046022 223 ALNENVFAITESTKVIDAIKCMRAALL---HAVPIVKSSGA 260 (262)
Q Consensus 223 ~~~~~v~tv~~~~~~~~A~~lM~~~~i---sav~VVd~~g~ 260 (262)
|.+++.++.+++++.+|++.|.+++. ...+||+++|.
T Consensus 67 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~ 106 (119)
T cd04598 67 -MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGR 106 (119)
T ss_pred -cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCe
Confidence 88889999999999999999999886 34568887764
No 172
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.32 E-value=6.2e-06 Score=62.84 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=68.8
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+..+.+++++.++.+.|. .+..++||. +++. .++...|+|+..|+.+.... +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~---------~~~~~~G~v~~~dl~~~~~~-----------------~ 56 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVV-DSTE---------ESPRLVGYILRSQLVVALKN-----------------Y 56 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceE-cCCC---------CCCEEEEEEeHHHHHHHHHH-----------------h
Confidence 467899999999999887 467789985 3310 01234699999999886643 4
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEc
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVK 256 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd 256 (262)
|.+++.++++++++.+|+++|.+++...+||++
T Consensus 57 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~ 89 (105)
T cd04591 57 IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD 89 (105)
T ss_pred ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE
Confidence 677889999999999999999999999999995
No 173
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.31 E-value=3.3e-06 Score=81.20 Aligned_cols=102 Identities=15% Similarity=0.227 Sum_probs=80.2
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHhc------CCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHH
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSK------GIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRF 202 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~------g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~ 202 (262)
..+++++|+. + +.++.+++++.++++.|.+ +...++|+ ++. ++..|+|+..|+++.
T Consensus 130 e~tvg~iMt~---~--~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vv-d~~------------~~l~GvV~l~dLl~a 191 (449)
T TIGR00400 130 DDSAGRIMTI---E--YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVT-NES------------KHLKGVLSIRDLILA 191 (449)
T ss_pred cchHHHhCcC---c--eEEECCCCcHHHHHHHHHhcCCCccceeEEEEE-CCC------------CeEEEEEEHHHHhcC
Confidence 5689999972 3 7899999999999999862 33456664 322 234599999998751
Q ss_pred HHhhcccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 203 MMNHASELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 203 L~~~~~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
. ...++++ +|+++++++++++++.+|++.|.++++.++||||++|.
T Consensus 192 ---~-------~~~~v~~--im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~ 237 (449)
T TIGR00400 192 ---K-------PEEILSS--IMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGR 237 (449)
T ss_pred ---C-------CCCcHHH--HhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCe
Confidence 1 2346777 48888999999999999999999999999999998874
No 174
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.30 E-value=3.6e-06 Score=81.03 Aligned_cols=95 Identities=24% Similarity=0.435 Sum_probs=76.1
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.+++++|. ++++++||..++.. .++++|+||..|+++.. . ...+++++
T Consensus 90 ~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~----------~~~lvGIVt~rDL~~~~----~-----~~~~V~dv-- 148 (450)
T TIGR01302 90 PVTISPETTVADVLELMERKGISGIPVVEDGDM----------TGKLVGIITKRDIRFVK----D-----KGKPVSEV-- 148 (450)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCC----------CCeEEEEEEHHHHhhhh----c-----CCCCHHHh--
Confidence 578999999999999998 68999999643210 02345999999996421 1 13467774
Q ss_pred cC-cCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 224 LN-ENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 224 ~~-~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
|+ ++++++.+++++.+|+++|.++++..+||||++|.
T Consensus 149 m~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~ 186 (450)
T TIGR01302 149 MTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGE 186 (450)
T ss_pred hCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCc
Confidence 77 48999999999999999999999999999999875
No 175
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.30 E-value=5.2e-06 Score=62.62 Aligned_cols=85 Identities=8% Similarity=0.080 Sum_probs=68.8
Q ss_pred EEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhccc
Q 046022 146 WTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGAL 224 (262)
Q Consensus 146 ~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~ 224 (262)
.++.+++++.++++.|. ++..++||. ++ ++ .+|+++..|+.++.. .++.+ ++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~-d~--~~-----------~~G~v~~~~l~~~~~-----------~~~~~--~~ 56 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVV-DY--NK-----------FLGAVYLKDIENATY-----------GDVVD--YI 56 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEE-EC--CE-----------EEEEEEHHHHhhhcc-----------cchhh--hh
Confidence 56899999999999998 688899985 32 22 359999999986321 23444 36
Q ss_pred CcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 225 NENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 225 ~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
.+...+++++.++.+|++.|.+++...+||+|+
T Consensus 57 ~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~ 89 (104)
T cd04594 57 VRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD 89 (104)
T ss_pred hcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC
Confidence 677899999999999999999999999999984
No 176
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.25 E-value=5.6e-06 Score=80.42 Aligned_cols=101 Identities=19% Similarity=0.327 Sum_probs=80.1
Q ss_pred ccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc
Q 046022 131 PVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE 209 (262)
Q Consensus 131 ~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~ 209 (262)
.+.++|.. + +.++.+++++.+++++|. +++.++||+ ++. ++++|+||..|+.+.. .
T Consensus 88 ~~~dim~~---~--~v~i~~~~tv~ea~~~m~~~~~~~lpVv-d~~------------g~lvGiVt~~DL~~~~----~- 144 (486)
T PRK05567 88 RSESGVVT---D--PVTVTPDTTLAEALALMARYGISGVPVV-DEN------------GKLVGIITNRDVRFET----D- 144 (486)
T ss_pred hhhhcccC---C--CeEeCCCCCHHHHHHHHHHhCCCEEEEE-ccC------------CEEEEEEEHHHhhhcc----c-
Confidence 45667752 3 588999999999999998 688999996 322 2345999999996421 1
Q ss_pred chhhhccccchhcccC-cCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 210 LKDITSHSIRELGALN-ENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 210 l~~l~~~ti~eL~~~~-~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
...++.++ |+ ++++++.+++++.+|+++|.+++++.+||+|++|.
T Consensus 145 ----~~~~V~di--m~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~ 190 (486)
T PRK05567 145 ----LSQPVSEV--MTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGR 190 (486)
T ss_pred ----CCCcHHHH--cCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 13456764 77 78999999999999999999999999999998874
No 177
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.20 E-value=1e-05 Score=77.64 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=78.6
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
..+++++|.. + +.++.+++++.++++.|. ++++++||+ +++ ++.+|+||..|+++++....
T Consensus 334 ~~~v~~im~~---~--~~~v~~~~tl~ea~~~m~~~~~~~~~Vv-d~~------------~~~~Givt~~dl~~~~~~~~ 395 (454)
T TIGR01137 334 NATVKDLHLP---A--PVTVHPTETVGDAIEILREYGFDQLPVV-TEA------------GKVLGSVTLRELLSALFAGK 395 (454)
T ss_pred cCCHHHhCcC---C--CeEECCCCcHHHHHHHHHHcCCCEEEEE-cCC------------CeEEEEEEHHHHHHHHhccC
Confidence 4689999962 3 688999999999999998 578899995 322 23459999999999776431
Q ss_pred ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG 259 (262)
Q Consensus 208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g 259 (262)
.. ...++.+ +|++++.++++++++.+|+++|.+++ .+||+++|
T Consensus 396 ~~----~~~~v~~--im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g 438 (454)
T TIGR01137 396 AN----PDDAVSK--VMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEG 438 (454)
T ss_pred CC----cCCCHHH--hcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECC
Confidence 11 1345776 48888999999999999999998864 35565554
No 178
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.20 E-value=1e-05 Score=77.64 Aligned_cols=136 Identities=11% Similarity=0.213 Sum_probs=104.0
Q ss_pred cccCCcchHHHHHhh--hcceeccccccCCcEEEEcCCCCHHHHHHHHHh-----CCCceEEEecCCCCcccCCCccccc
Q 046022 11 SSAGKHAADENQRLL--REAKVRDLTAEKRRIVEVPHTASLAHTMNALVA-----NKVVAVPVAAPPGQWIGAGGSMIME 83 (262)
Q Consensus 11 ~~~~~~~~~~~~~~l--~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~-----~~i~s~PVvd~~~~~~~~~~~~~~~ 83 (262)
++.++.-+.+.+..+ .+-+++-+|. .+.++++++.|+.+|+..+++ ..+..+-|+|..
T Consensus 113 ~~l~~~~r~~v~~~l~y~e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~------------- 177 (451)
T COG2239 113 SLLDPEERARVRQLLSYPEDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK------------- 177 (451)
T ss_pred HhCCHHHHHHHHHhcCCChhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-------------
Confidence 344444555555544 3346999995 589999999999999999994 456778899875
Q ss_pred ccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-
Q 046022 84 SDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS- 162 (262)
Q Consensus 84 ~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~- 162 (262)
++++|+++.++++..=. ..+++++|.. . ++++.+++...++..+|.
T Consensus 178 ---------~~L~Gvvsl~~Ll~a~~-------------------~~~i~~im~~---~--~~~V~~~~dqeevA~~~~~ 224 (451)
T COG2239 178 ---------GKLLGVVSLRDLLTAEP-------------------DELLKDLMED---D--VVSVLADDDQEEVARLFEK 224 (451)
T ss_pred ---------cceEEEeeHHHHhcCCc-------------------HhHHHHHhcc---c--ceeecccCCHHHHHHHHHH
Confidence 68999999999763211 2369999972 3 589999999999999998
Q ss_pred cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 163 KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 163 ~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
.+.-.+||+.++ ++.+|+||+-|++.-+.+..
T Consensus 225 ydl~a~PVVd~~-------------~~LiG~itiDDiidvi~eEa 256 (451)
T COG2239 225 YDLLAVPVVDED-------------NRLIGIITIDDIIDVIEEEA 256 (451)
T ss_pred hCCeecceECCC-------------CceeeeeeHHHHHHHHHHHH
Confidence 688899996432 34569999999999887643
No 179
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.16 E-value=3.2e-05 Score=58.16 Aligned_cols=88 Identities=17% Similarity=0.206 Sum_probs=69.0
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcc
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGA 223 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~ 223 (262)
+.++.+++++.++++.|. .+..++||. ++. ++.+|++++.++++.. . ..++.+ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~------------~~~~g~v~~~~l~~~~----~------~~~~~~--~ 57 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVV-KKS------------GELVGIITRKDLLRNP----E------EEQLAL--L 57 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEE-cCC------------CcEEEEEEHHHHHhcc----c------cchHHH--H
Confidence 567899999999999987 577788885 322 2346999999997521 1 123444 3
Q ss_pred cCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 224 LNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 224 ~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
+.+++.++.+++++.+|+..|.+++...+||+|+
T Consensus 58 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~ 91 (106)
T cd04638 58 MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD 91 (106)
T ss_pred hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 6778899999999999999999999999999985
No 180
>PRK11573 hypothetical protein; Provisional
Probab=98.15 E-value=1.6e-05 Score=75.74 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=84.7
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
+++|+++|.. +.. +..++.++++.++++.+. .|..|+||. +++.+++ +|+|.-.|++.++.+.
T Consensus 186 ~~~v~eiMtP--r~~-i~~l~~~~~~~e~~~~~~~~~~SR~PVy-~~~~D~I-----------iGiv~~kDll~~~~~~- 249 (413)
T PRK11573 186 KVTVDDIMVP--RNE-IVGIDINDDWKSILRQLTHSPHGRIVLY-RDSLDDA-----------ISMLRVREAYRLMTEK- 249 (413)
T ss_pred CCChhhcCCc--cce-EEEEECCCCHHHHHHHHHhCCCceEEEE-cCCCCce-----------EEEEEHHHHHHHhhcc-
Confidence 6799999983 332 789999999999999887 799999995 4443444 4999999999865432
Q ss_pred ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT 261 (262)
Q Consensus 208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~ 261 (262)
..+ ...++.+ + -+++..|++++++.++++.|.+++..=.-|||+-|.+
T Consensus 250 ~~~---~~~~l~~--~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~ 297 (413)
T PRK11573 250 KEF---TKENMLR--A-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDI 297 (413)
T ss_pred CcC---CHHHHHh--h-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCe
Confidence 111 0112222 2 3578999999999999999999988888899998875
No 181
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.11 E-value=7.3e-06 Score=80.01 Aligned_cols=144 Identities=15% Similarity=0.250 Sum_probs=99.9
Q ss_pred HhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHH
Q 046022 23 RLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTML 102 (262)
Q Consensus 23 ~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~ 102 (262)
-.+++.+++|+|. +|+++++.-+.+...+++|...+..+.||+|... +...+++.|+|=..
T Consensus 577 ~~mr~L~a~ev~~--~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~-----------------~~~~~~l~GlILRs 637 (762)
T KOG0474|consen 577 PYMRNLTAGEVMS--KPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPP-----------------SNEAGRLHGLILRS 637 (762)
T ss_pred hHhhhhhHhhhcc--CCeEEEechhhHHHHHHHHHhcCcCCCccccCCC-----------------CccchhhhHHHHHH
Confidence 3567889999994 4999999999999999999999999999999752 00125788998888
Q ss_pred HHHHHHhCCCC---------CCCCCC-CcchHH---------------hhhccccccccccCCCCCeeEEeCCCCCHHHH
Q 046022 103 DILAHIAGDDQ---------MNGSDD-APDDLD---------------KKMSAPVSSIIGHCPEGLSLWTLSPNTSILDC 157 (262)
Q Consensus 103 Dil~~l~~~~~---------l~~~~~-~~~~~~---------------~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a 157 (262)
.++.-+-.... ++.... ...++. ..+-..+..+|+. . .++|.+++|+..+
T Consensus 638 hl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~---s--PytV~~~mSl~k~ 712 (762)
T KOG0474|consen 638 HLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNP---S--PYTVPETMSLAKA 712 (762)
T ss_pred HHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCC---C--CcccCcccchHHH
Confidence 87765543111 111100 011111 1123344455652 2 4789999999999
Q ss_pred HHHHhc-CCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHH
Q 046022 158 MEVFSK-GIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFM 203 (262)
Q Consensus 158 ~~~m~~-g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L 203 (262)
..+|.+ |.|++.|+.+.. ...||+||.|+.+|=
T Consensus 713 ~~lFR~lGLRhLlVv~~~~-------------~~~gilTR~D~~~~~ 746 (762)
T KOG0474|consen 713 FILFRQLGLRHLLVVPKTN-------------RVVGILTRKDLARYR 746 (762)
T ss_pred HHHHHHhcceeEEEecCCC-------------ceeEEEehhhhhhHH
Confidence 999995 999999953321 235999999999864
No 182
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.10 E-value=6.2e-06 Score=63.94 Aligned_cols=55 Identities=22% Similarity=0.407 Sum_probs=48.6
Q ss_pred ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022 28 AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA 106 (262)
Q Consensus 28 ~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~ 106 (262)
.+++|+|.. ++.++++++++.+|++.|.++++..+||++.+ ++++|+|+..||.+
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~----------------------~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDD----------------------GTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC----------------------CeEEEEEEHHHhhc
Confidence 679999953 56789999999999999999999999999875 58999999999753
No 183
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.08 E-value=7.6e-05 Score=70.86 Aligned_cols=121 Identities=8% Similarity=0.109 Sum_probs=87.8
Q ss_pred ceeccccccCCc-EEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022 28 AKVRDLTAEKRR-IVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA 106 (262)
Q Consensus 28 ~~v~dlm~~~~~-lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~ 106 (262)
.++.++|..... .+...++.+..+|++.|..++..++.|+|.. +++.|+++..|+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~g~~~~~~~~~ 331 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG----------------------NKFVGAVSIDSLKT 331 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC----------------------CcEEEEEeHHHHHh
Confidence 346677732111 2234467789999999999999999999975 68999999999876
Q ss_pred HHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceecc
Q 046022 107 HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVE 186 (262)
Q Consensus 107 ~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~~ 186 (262)
+.... .++.+.+.. . +.++.++++|.+++..|.+.-..+||+ +++
T Consensus 332 ~~~~~------------------~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~----------- 376 (400)
T PRK10070 332 ALTQQ------------------QGLDAALID---A--PLAVDAQTPLSELLSHVGQAPCAVPVV-DED----------- 376 (400)
T ss_pred hhhcC------------------Cchhhhhcc---C--CceeCCCCCHHHHHHHHHhCCCcEEEE-CCC-----------
Confidence 54321 134555531 2 467999999999999988544558885 422
Q ss_pred cCCeeeEecHHHHHHHHHhh
Q 046022 187 SASSYQMLTQMDLLRFMMNH 206 (262)
Q Consensus 187 ~~~~~giITqsDIir~L~~~ 206 (262)
++..|+||..++++.|...
T Consensus 377 -~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 377 -QQYVGIISKGMLLRALDRE 395 (400)
T ss_pred -CcEEEEEEHHHHHHHHHhc
Confidence 2345999999999999764
No 184
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.97 E-value=6.6e-06 Score=80.87 Aligned_cols=72 Identities=10% Similarity=0.212 Sum_probs=59.7
Q ss_pred cchHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeE
Q 046022 16 HAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHY 95 (262)
Q Consensus 16 ~~~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~ 95 (262)
......+.+-.+.+|+++|. +++++++++++++.+|.+.|.++++..+||+|++ +++
T Consensus 234 dt~~t~~~l~~~~~V~~iM~-~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~----------------------g~l 290 (546)
T PRK14869 234 DTFTTARLINQSIPVSYIMT-TEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED----------------------GKV 290 (546)
T ss_pred cHHHHHHHhhcCCCHHHhcc-CCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCC----------------------CCE
Confidence 33344455666788999995 2578899999999999999999999999999975 689
Q ss_pred EEEEeHHHHHHHHhC
Q 046022 96 IGMLTMLDILAHIAG 110 (262)
Q Consensus 96 vGivs~~Dil~~l~~ 110 (262)
+|+++..|++.+...
T Consensus 291 vGiit~~dl~~~~~~ 305 (546)
T PRK14869 291 VGVISRYHLLSPVRK 305 (546)
T ss_pred EEEEEHHHhhccccC
Confidence 999999999986543
No 185
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.95 E-value=6.8e-05 Score=71.80 Aligned_cols=109 Identities=19% Similarity=0.289 Sum_probs=84.7
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
+++|+++|+. ..+ +..++.+.++.++.+.+. .+..|+||.. +..+++ +|++.-.|+++++....
T Consensus 205 ~~~v~eiMtP-R~~--i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~i-----------iGiv~~Kdll~~~~~~~ 269 (429)
T COG1253 205 DRTVREIMTP-RTD--IVALDLTDTVEELIELILESGHSRIPVYD-GDLDNI-----------IGIVHVKDLLRALLDGQ 269 (429)
T ss_pred CcEeeeEeee-ccc--EEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcE-----------EEEEEHHHHHHHHhcCc
Confidence 6799999983 233 678888999999999886 7889999964 444444 49999999999887753
Q ss_pred ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT 261 (262)
Q Consensus 208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~ 261 (262)
+. ..... .. ++++.|++++++.++++.|++++..=.-|+|+-|.+
T Consensus 270 ~~------~~~~~--~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~ 314 (429)
T COG1253 270 SD------LDLRV--LV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGV 314 (429)
T ss_pred cc------cchhh--cc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCe
Confidence 20 01111 12 289999999999999999999988888888988765
No 186
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.82 E-value=0.00033 Score=65.69 Aligned_cols=108 Identities=10% Similarity=0.144 Sum_probs=82.3
Q ss_pred EEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCCCC
Q 046022 41 VEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSDDA 120 (262)
Q Consensus 41 v~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~~ 120 (262)
+...++.+..++++.|..++..++.|++.+ +++.|+++..++..++-..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~g~~~~~~~~~~~~~~--------- 301 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDRQ----------------------NKLVGVVDVESIKQARKKA--------- 301 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcCC----------------------CCEEEEEeHHHHHHHhhcC---------
Confidence 356677899999999999999999999875 5899999999987766431
Q ss_pred cchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceecccCCeeeEecHHHHH
Q 046022 121 PDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLL 200 (262)
Q Consensus 121 ~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIi 200 (262)
..+.+.+.. . +.++.++++|.+++..|.+.-+.+||+ +++ ++..|+||+.+|+
T Consensus 302 ---------~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~------------~~~~g~i~~~~~~ 354 (363)
T TIGR01186 302 ---------QGLQDVLID---D--IYTVDAGTLLRETVRKVLKAGIKVPVV-DED------------QRLVGIVTRGSLV 354 (363)
T ss_pred ---------Cchhhhhcc---C--CceECCCCcHHHHHHHHHhCCCCEEEE-CCC------------CcEEEEEEHHHHH
Confidence 134555541 2 467999999999999998433349986 432 2345999999999
Q ss_pred HHHHhh
Q 046022 201 RFMMNH 206 (262)
Q Consensus 201 r~L~~~ 206 (262)
+.|...
T Consensus 355 ~~~~~~ 360 (363)
T TIGR01186 355 DALYDS 360 (363)
T ss_pred HHHHhh
Confidence 998764
No 187
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.81 E-value=8.5e-05 Score=46.70 Aligned_cols=47 Identities=21% Similarity=0.413 Sum_probs=41.5
Q ss_pred EEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHH
Q 046022 40 IVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHI 108 (262)
Q Consensus 40 lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l 108 (262)
.+++++++++.++++.|.++++..+||++++ ++++|+++..|++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----------------------~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE----------------------GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC----------------------CeEEEEEEHHHHHHhh
Confidence 4678999999999999999999999999864 5899999999987654
No 188
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.78 E-value=5.7e-05 Score=70.71 Aligned_cols=108 Identities=18% Similarity=0.261 Sum_probs=83.4
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCCCCC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMNGSD 118 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~~~~ 118 (262)
+.++++|+.|+.++++.-..+++..+||.... ....+++|+||.+| +.|+ ++.
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g-------------------~~~~KLvG~vtsrd-i~f~-~~~------ 169 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDG-------------------KRGSKLVGIITSRD-IQFL-EDN------ 169 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCC-------------------cccceeEEEEehhh-hhhh-hcc------
Confidence 34688999999999999999999999997532 11368999999999 5666 322
Q ss_pred CCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHH
Q 046022 119 DAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQM 197 (262)
Q Consensus 119 ~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqs 197 (262)
.++++++|+. + .++...+-+|.++=+++. ..-.++||+.+.. ++ +.+|+++
T Consensus 170 ----------~~~~~~vmt~---~--~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~g--el-----------va~~~rt 221 (503)
T KOG2550|consen 170 ----------SLLVSDVMTK---N--PVTGAQGITLKEANEILKKIKKGKLPVVDDKG--EL-----------VAMLSRT 221 (503)
T ss_pred ----------cchhhhhccc---c--cccccccccHHHHHHHHHhhhcCCcceeccCC--ce-----------eeeeehh
Confidence 2478999983 2 267788899999999988 4667899964322 23 4899999
Q ss_pred HHHH
Q 046022 198 DLLR 201 (262)
Q Consensus 198 DIir 201 (262)
|+.+
T Consensus 222 Dl~k 225 (503)
T KOG2550|consen 222 DLMK 225 (503)
T ss_pred hhhh
Confidence 9976
No 189
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.00055 Score=67.18 Aligned_cols=128 Identities=14% Similarity=0.248 Sum_probs=90.0
Q ss_pred CCcEEEEcCC-CCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhCCCCCC
Q 046022 37 KRRIVEVPHT-ASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAGDDQMN 115 (262)
Q Consensus 37 ~~~lv~v~~~-~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~~~~l~ 115 (262)
.+++++++.+ .|++|...+|.+......||+-+++ +++++|+++.+|+...+...+...
T Consensus 555 ~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~--------------------sq~lvGfv~rr~l~~~i~~ar~~q 614 (696)
T KOG0475|consen 555 ESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSED--------------------SQRLVGFVLRRNLFLAILNARKIQ 614 (696)
T ss_pred chhheeccccceeHHHHHHHHhhcccCCceEEEccc--------------------cceeEEEEchHHHHHHHhhhcccc
Confidence 3468888887 9999999999999999999986542 379999999999998887421111
Q ss_pred --------CCCCCcchHH-hh-hccccccccccCCCCCeeEEeCCCCCHHHHHHHHhc-CCCeeEeecCCCCccccccee
Q 046022 116 --------GSDDAPDDLD-KK-MSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSK-GIHRALVPMDSRMENISGVEL 184 (262)
Q Consensus 116 --------~~~~~~~~~~-~~-~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~-g~~rv~V~~~~~~~~~~g~~~ 184 (262)
...+...... .. -....+++|+. . +.++...++..-++.+|.+ |++.+.|..+
T Consensus 615 ~~~~~~~~~f~~~~~~~~~~~~~~~~lk~il~~---t--p~tv~d~tp~~~v~~~F~~lg~~~~~v~~~----------- 678 (696)
T KOG0475|consen 615 SFIVTTSIYFNDPSPSAVAGIPSRLDLKDILDM---T--PFTVTDLTPMETVVDLFRKLGLRQILVTKN----------- 678 (696)
T ss_pred ccceecccccCCCCccccCCCCCCcCceeeccC---C--cccccccCcHHHHHHHHHhhCceEEEEccC-----------
Confidence 0000000000 00 02246677764 2 4789999999999999985 8999988433
Q ss_pred cccCCeeeEecHHHHHHHH
Q 046022 185 VESASSYQMLTQMDLLRFM 203 (262)
Q Consensus 185 ~~~~~~~giITqsDIir~L 203 (262)
|...|+||..|++++.
T Consensus 679 ---G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 679 ---GILLGIITKKDCLRHT 694 (696)
T ss_pred ---CeeEeeeehHHHHHhh
Confidence 2335999999999975
No 190
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=97.45 E-value=0.00044 Score=63.83 Aligned_cols=102 Identities=21% Similarity=0.259 Sum_probs=80.6
Q ss_pred cccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcc
Q 046022 130 APVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHAS 208 (262)
Q Consensus 130 ~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~ 208 (262)
..|.++|.+ .+. .-.+.+++++.+-.++-. .|..|+||+ |... +++|++|-.|++..
T Consensus 188 ~~Vedi~~P-~~~--~~yL~~~d~v~d~~~l~~kt~~sRfPVv-n~~~------------kvvGvVt~rDv~~~------ 245 (432)
T COG4109 188 ITVEDIMTP-LED--TSYLRETDTVEDWLDLVEKTGHSRFPVV-NRSM------------KVVGVVTMRDVLDK------ 245 (432)
T ss_pred eeHHHhccc-ccc--ceeccccccHHHHHHHHHHcCCCcccee-cccc------------eEEEEEEehhhhcC------
Confidence 367888873 233 456889999999888766 688999995 4332 34599999998652
Q ss_pred cchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCC
Q 046022 209 ELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSG 259 (262)
Q Consensus 209 ~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g 259 (262)
.++.+|.. .|+++++++.+.+++..+.++|.-.++.-+||||++.
T Consensus 246 ----~~~t~ieK--VMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~ 290 (432)
T COG4109 246 ----KPSTTIEK--VMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNN 290 (432)
T ss_pred ----CCCccHHH--HhccCCeeecccchHHHHHHHHHhccceeeeEEcCCc
Confidence 12456665 5999999999999999999999999999999999875
No 191
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.02 E-value=0.0062 Score=57.21 Aligned_cols=90 Identities=9% Similarity=0.203 Sum_probs=69.8
Q ss_pred EEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhccc
Q 046022 146 WTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGAL 224 (262)
Q Consensus 146 ~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~ 224 (262)
....++.+..++++.|. ++...+.|+.+ + +...|+++..++.+|+... .++.+. +
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------------~~~~g~~~~~~~~~~~~~~---------~~~~~~--~ 308 (363)
T TIGR01186 253 ITKTADKGPRSALQLMRDERVDSLYVVDR-Q------------NKLVGVVDVESIKQARKKA---------QGLQDV--L 308 (363)
T ss_pred eeecCCCCHHHHHHHHHhcCCceEEEEcC-C------------CCEEEEEeHHHHHHHhhcC---------Cchhhh--h
Confidence 45677888999999888 67778877533 2 2345999999998887542 134442 4
Q ss_pred CcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 225 NENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 225 ~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
...+.++++++++.+|+.+|.+++.. +||||++|.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 343 (363)
T TIGR01186 309 IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQR 343 (363)
T ss_pred ccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCc
Confidence 56788999999999999999999999 999998874
No 192
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.00095 Score=64.22 Aligned_cols=60 Identities=23% Similarity=0.382 Sum_probs=53.4
Q ss_pred cceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHH
Q 046022 27 EAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILA 106 (262)
Q Consensus 27 ~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~ 106 (262)
...++|+|.. .++++.+++..+++.+++.++++.++||+|++ ++++|++|..|++.
T Consensus 195 ~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~----------------------~~LiG~itiDDiid 250 (451)
T COG2239 195 DELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDED----------------------NRLIGIITIDDIID 250 (451)
T ss_pred HhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCC----------------------CceeeeeeHHHHHH
Confidence 4568999953 48999999999999999999999999999985 69999999999998
Q ss_pred HHhC
Q 046022 107 HIAG 110 (262)
Q Consensus 107 ~l~~ 110 (262)
-+-+
T Consensus 251 vi~e 254 (451)
T COG2239 251 VIEE 254 (451)
T ss_pred HHHH
Confidence 7765
No 193
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.0041 Score=57.97 Aligned_cols=111 Identities=16% Similarity=0.218 Sum_probs=82.8
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcC-CCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKG-IHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g-~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
+.+|+|+|.+ ++- +..++.|++..++++-+.+. ..|+|+.. +..+++ +||+--.|++|++.++.
T Consensus 199 ~~tV~DIMvp--R~~-i~~id~d~~~e~iv~ql~~s~HtRiplyr-~~~DnI-----------iGvlh~r~llr~l~e~~ 263 (423)
T COG4536 199 NLTVSDIMVP--RNE-IIGIDIDDPWEEIVRQLLHSPHTRIPLYR-DDLDNI-----------IGVLHVRDLLRLLNEKN 263 (423)
T ss_pred cceeeeeecc--ccc-eeeecCCCCHHHHHHHHhhCCCCceeeec-CChhHh-----------hhhhhHHHHHHHhhccC
Confidence 3589999973 333 78899999999999977644 45999953 344444 49999999999998875
Q ss_pred ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT 261 (262)
Q Consensus 208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~ 261 (262)
. +... .+.. .-..+..|++++|+.+-+..|.+++-.=--|||+=|+.
T Consensus 264 ~-~~k~---d~~~---~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i 310 (423)
T COG4536 264 E-FTKE---DILR---AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDI 310 (423)
T ss_pred c-ccHh---HHHH---HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcE
Confidence 3 3211 1111 12468999999999999999999877767788988874
No 194
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.002 Score=60.54 Aligned_cols=95 Identities=17% Similarity=0.292 Sum_probs=76.2
Q ss_pred EEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhccc
Q 046022 146 WTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGAL 224 (262)
Q Consensus 146 ~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~ 224 (262)
+...|+.++.++++... .|+..+||..++.. +++++|+||-+|+ .|+.++ +..+.+ +|
T Consensus 119 ~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~----------~~KLvG~vtsrdi-~f~~~~--------~~~~~~--vm 177 (503)
T KOG2550|consen 119 IVISPTTTVGEVKEAKEKHGFSGIPVTEDGKR----------GSKLVGIITSRDI-QFLEDN--------SLLVSD--VM 177 (503)
T ss_pred cccCCcccchhhhhhcccccccccccccCCcc----------cceeEEEEehhhh-hhhhcc--------cchhhh--hc
Confidence 56899999999999766 79999999644432 2456799999996 666333 234565 47
Q ss_pred CcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCCC
Q 046022 225 NENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGAT 261 (262)
Q Consensus 225 ~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~~ 261 (262)
++..++......+.+|=..+.+++-+.+||||++|+.
T Consensus 178 t~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gel 214 (503)
T KOG2550|consen 178 TKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGEL 214 (503)
T ss_pred ccccccccccccHHHHHHHHHhhhcCCcceeccCCce
Confidence 8777889999999999999999999999999999975
No 195
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=96.77 E-value=0.012 Score=56.10 Aligned_cols=89 Identities=12% Similarity=0.164 Sum_probs=67.7
Q ss_pred EeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhcccchhhhccccchhcccC
Q 046022 147 TLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASELKDITSHSIRELGALN 225 (262)
Q Consensus 147 ~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~l~~l~~~ti~eL~~~~ 225 (262)
...++.+..+++..|. .+...+.|+ +.. +...|+|+..++.++.... .++.+ .+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~g~~~~~~~~~~~~~~---------~~~~~--~~~ 344 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDREYGYVI-ERG------------NKFVGAVSIDSLKTALTQQ---------QGLDA--ALI 344 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCCceEEEE-cCC------------CcEEEEEeHHHHHhhhhcC---------Cchhh--hhc
Confidence 3457778899999988 788899885 322 2345999999998876432 13343 245
Q ss_pred cCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 226 ENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 226 ~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
..+.++.+++++.+|+..|...... +||||++|.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 378 (400)
T PRK10070 345 DAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQ 378 (400)
T ss_pred cCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCc
Confidence 6688999999999999999997655 999998874
No 196
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0053 Score=54.03 Aligned_cols=108 Identities=25% Similarity=0.360 Sum_probs=82.4
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
...|+++|- |+.. ..++..+.+|.+++..+. ....|+||. .+..+++ .||+-..|+++|+.+..
T Consensus 66 dl~vrDiMI--PRSQ-M~~l~~~~~l~~~l~~iiesaHSRfPVi-~edkD~v-----------~GIL~AKDLL~~~~~~~ 130 (293)
T COG4535 66 DLRVRDIMI--PRSQ-MITLKRNQTLDECLDVIIESAHSRFPVI-SEDKDHV-----------EGILLAKDLLPFMRSDA 130 (293)
T ss_pred HhhHhhhcc--cHHH-heeccccCCHHHHHHHHHHhccccCCcc-cCCchhh-----------hhhhhHHHHHHHhcCCc
Confidence 457999996 2333 588999999999999887 566799994 3333344 38999999999988764
Q ss_pred ccchhhhccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 208 SELKDITSHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 208 ~~l~~l~~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
..| .+++ +=+|.+.|+++..+---+|.++.++-.-.-|||+=|.
T Consensus 131 ~~F------~i~~---lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGg 174 (293)
T COG4535 131 EPF------DIKE---LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGG 174 (293)
T ss_pred ccc------cHHH---hcccceecccchhHHHHHHHHHhhcCceEEEEeccCC
Confidence 433 3455 2478999999999999999999887666667777664
No 197
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.47 E-value=0.0063 Score=46.89 Aligned_cols=58 Identities=14% Similarity=0.348 Sum_probs=44.9
Q ss_pred HHHHhhcccchh--hhc--cccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcCCCC
Q 046022 201 RFMMNHASELKD--ITS--HSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKSSGA 260 (262)
Q Consensus 201 r~L~~~~~~l~~--l~~--~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~~g~ 260 (262)
+|+.+..+.-.+ +.+ .++++ +|.+++.++.+++++.+|++.|.+++...+||+|++|.
T Consensus 39 ~~vl~~~~~~~p~ll~~v~~~v~d--im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~ 100 (113)
T cd04597 39 RYVLEYLGIEPPILLADVHPRVRD--VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGT 100 (113)
T ss_pred HHHHHHcCCCCchhhcchhhhHHH--hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCe
Confidence 666666554222 222 45666 47788999999999999999999999999999998763
No 198
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.06 E-value=0.022 Score=35.23 Aligned_cols=46 Identities=24% Similarity=0.462 Sum_probs=36.5
Q ss_pred eEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHH
Q 046022 145 LWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFM 203 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L 203 (262)
+.++.+++++.++++.|. .+.+++||..+ + +..+|+++..++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~------------~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-E------------GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-C------------CeEEEEEEHHHHHHhh
Confidence 367899999999999998 68899999533 2 2335999999998865
No 199
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=90.98 E-value=0.71 Score=46.08 Aligned_cols=118 Identities=13% Similarity=0.184 Sum_probs=83.4
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
+-.++++|+ + + ++++..-+++..++++++ ...+.+||+++.... +.+.+.|+|=++.++..|.+..
T Consensus 581 ~L~a~ev~~-~--p--vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~--------~~~~l~GlILRshl~vlL~~~~ 647 (762)
T KOG0474|consen 581 NLTAGEVMS-K--P--VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSN--------EAGRLHGLILRSHLLVLLKKRV 647 (762)
T ss_pred hhhHhhhcc-C--C--eEEEechhhHHHHHHHHHhcCcCCCccccCCCCc--------cchhhhHHHHHHHHHHHHHhhh
Confidence 457899997 2 2 799999999999999998 566789996443221 1234568888888887665432
Q ss_pred cc----------------chhh--hccccchhc--------------ccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEE
Q 046022 208 SE----------------LKDI--TSHSIRELG--------------ALNENVFAITESTKVIDAIKCMRAALLHAVPIV 255 (262)
Q Consensus 208 ~~----------------l~~l--~~~ti~eL~--------------~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VV 255 (262)
-. +..+ ...+++|+. +|++.+++|.+++++.-|+.+++.-|+..+-||
T Consensus 648 f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv 727 (762)
T KOG0474|consen 648 FVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVV 727 (762)
T ss_pred hhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEe
Confidence 00 0000 012233322 377889999999999999999999999999999
Q ss_pred cCCC
Q 046022 256 KSSG 259 (262)
Q Consensus 256 d~~g 259 (262)
+...
T Consensus 728 ~~~~ 731 (762)
T KOG0474|consen 728 PKTN 731 (762)
T ss_pred cCCC
Confidence 8653
No 200
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=88.07 E-value=2 Score=40.77 Aligned_cols=47 Identities=9% Similarity=0.154 Sum_probs=35.9
Q ss_pred eEEeCCCCCHHHHHHHHhcCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHh
Q 046022 145 LWTLSPNTSILDCMEVFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMN 205 (262)
Q Consensus 145 ~~~v~~~~sL~~a~~~m~~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~ 205 (262)
+.++.++++|.+++..+.+.-+-++|+ ++ ++.+|+||+.+|+..|..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~-------------~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 335 PTVINPDTLMRDVLAARHRTGGAILLV-EN-------------GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred CcccCCCCcHHHHHHHHhcCCCCeEEe-eC-------------CeEEEEEeHHHHHHHHhc
Confidence 467999999999999887544567774 32 233599999999998754
No 201
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=87.20 E-value=1.3 Score=41.92 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=40.4
Q ss_pred cEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhC
Q 046022 39 RIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAG 110 (262)
Q Consensus 39 ~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~ 110 (262)
...++++++++.+++..+.+... -+||++. ++++|+|+..+++..+.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-----------------------~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGG-AILLVEN-----------------------GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-----------------------CeEEEEEeHHHHHHHHhc
Confidence 45689999999999999888775 4788874 589999999999988753
No 202
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=87.08 E-value=1.8 Score=40.31 Aligned_cols=124 Identities=9% Similarity=0.129 Sum_probs=78.9
Q ss_pred CcchHHHHHhhhc------ceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccc
Q 046022 15 KHAADENQRLLRE------AKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQT 88 (262)
Q Consensus 15 ~~~~~~~~~~l~~------~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~ 88 (262)
+-|++-.++|..+ .++.++|....+.+.-.+...-..|++.+.......+-+++..
T Consensus 255 ~PAndYV~~Fv~~v~~~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~------------------ 316 (386)
T COG4175 255 NPANDYVRDFVRNVDRSRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG------------------ 316 (386)
T ss_pred CccHHHHHHHHhcCChhheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhcc------------------
Confidence 3444444555543 3678888532222222333444678888888777666666632
Q ss_pred cCcCCeEEEEEeHHHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCee
Q 046022 89 GAVRKHYIGMLTMLDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRA 168 (262)
Q Consensus 89 ~~~~~~~vGivs~~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv 168 (262)
++++|+++..+++.. .+. + . +.++.+++.+.+.+....+.--.+
T Consensus 317 ----~~~~g~v~~~~~~~~---------------------------~~~-~--~--~~~v~~d~~~~~~~~~~~~~~~p~ 360 (386)
T COG4175 317 ----NKFVGVVSIDSLVKA---------------------------ALI-D--D--VLTVDADTPLSEILARIRQAPCPV 360 (386)
T ss_pred ----CceeeEEeccchhcc---------------------------ccc-c--c--ccccCccchHHHHHHHHhcCCCce
Confidence 579999988774432 121 1 1 578999999999999888555566
Q ss_pred EeecCCCCcccccceecccCCeeeEecHHHHHHHHHh
Q 046022 169 LVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMN 205 (262)
Q Consensus 169 ~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~ 205 (262)
+|+.+ + ++.+|+|+...++..|..
T Consensus 361 aVvde-~------------~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 361 AVVDE-D------------GRYVGIISRGELLEALAR 384 (386)
T ss_pred eEEcC-C------------CcEEEEecHHHHHHHHhc
Confidence 66433 2 334599999999998865
No 203
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=83.54 E-value=1.9 Score=42.31 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=75.3
Q ss_pred HhhhcceeccccccCCcEEEEcCCCCHH-HHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeH
Q 046022 23 RLLREAKVRDLTAEKRRIVEVPHTASLA-HTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTM 101 (262)
Q Consensus 23 ~~l~~~~v~dlm~~~~~lv~v~~~~tv~-eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~ 101 (262)
-.|....++|+|+.-..+..++.+..+. +......+++.+++||++... ...+|.+=.
T Consensus 199 l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~---------------------~~~i~~~L~ 257 (498)
T KOG2118|consen 199 LELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEP---------------------KNKIGGLLV 257 (498)
T ss_pred HHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcc---------------------cchhhHHHH
Confidence 4567788999998766777888888887 556666699999999998652 334444333
Q ss_pred HHHHHHHhCCCCCCCCCCCcchHHhhhccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcCCCeeEeecC
Q 046022 102 LDILAHIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKGIHRALVPMD 173 (262)
Q Consensus 102 ~Dil~~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g~~rv~V~~~ 173 (262)
...++++.....+ -..+++..+-. . +..+.+++++.+.+..|.+|-.|..|+.+
T Consensus 258 ~~~~~~~~~~~~~-------------~~~~v~~~~~~---~--l~~vp~~~~~~~~l~~~~~~~~H~~~v~~ 311 (498)
T KOG2118|consen 258 MNLLRLLQVEVPL-------------EPLPVSESALL---R--LPLVPENMPLLDLLNEFQKGKSHMAVVRN 311 (498)
T ss_pred hhhhhhhcccccc-------------ccccchhhhcc---c--cccCCCcccHHHHHHHHhhhhceeEEEec
Confidence 3335555432111 12356666642 2 56689999999999999976666666444
No 204
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=81.56 E-value=2.9 Score=37.82 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=36.1
Q ss_pred EcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHH
Q 046022 43 VPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAH 107 (262)
Q Consensus 43 v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~ 107 (262)
+.....-.+|+..+...+...+||+|++ ++++|.++..|++.+
T Consensus 266 ~~~~~~~~~~ls~~~~~~~~~~~Vvd~~----------------------g~~~G~vt~~~l~~~ 308 (309)
T COG1125 266 LLEGFVDRDALSDFLARGRSVLPVVDED----------------------GRPLGTVTRADLLDE 308 (309)
T ss_pred cccchhhHHHHHHHHhcCCceeEEECCC----------------------CcEeeEEEHHHHhhh
Confidence 3345566779999999999999999986 699999999999865
No 205
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=77.79 E-value=3.7 Score=42.06 Aligned_cols=65 Identities=11% Similarity=0.160 Sum_probs=54.3
Q ss_pred hhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHH
Q 046022 24 LLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLD 103 (262)
Q Consensus 24 ~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~D 103 (262)
..+.+.|.++|. +++..+..+.|..|.-++|....++++|++++.+ ..-++|.|...-
T Consensus 584 ~~h~v~VE~iMV--~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~e--------------------smiLlGSV~R~~ 641 (931)
T KOG0476|consen 584 SVHTVKVEHIMV--TDVKYITKDTTYRELREALQTTTLRSFPLVESKE--------------------SMILLGSVARRY 641 (931)
T ss_pred ceeEEEeeeecc--ccceeeeccCcHHHHHHHHHhCccceeccccCcc--------------------cceeeehhHHHH
Confidence 346778999996 4899999999999999999988899999999763 246899999999
Q ss_pred HHHHHhC
Q 046022 104 ILAHIAG 110 (262)
Q Consensus 104 il~~l~~ 110 (262)
+...+-.
T Consensus 642 L~~ll~~ 648 (931)
T KOG0476|consen 642 LTALLQR 648 (931)
T ss_pred HHHHHHh
Confidence 8776553
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=70.65 E-value=56 Score=29.76 Aligned_cols=138 Identities=19% Similarity=0.233 Sum_probs=75.6
Q ss_pred cCCccccCCcchHHHHHhhhcceeccccccCCcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccc
Q 046022 7 QDPISSAGKHAADENQRLLREAKVRDLTAEKRRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDK 86 (262)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~~v~dlm~~~~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~ 86 (262)
-+|||-+.-.-+..++..+.... +.+ ..-+|.|++ -+.||+++= ..+-|.+.
T Consensus 160 DEPFgALDpI~R~~lQ~e~~~lq-~~l---~kTivfVTH--DidEA~kLa-----dri~vm~~----------------- 211 (309)
T COG1125 160 DEPFGALDPITRKQLQEEIKELQ-KEL---GKTIVFVTH--DIDEALKLA-----DRIAVMDA----------------- 211 (309)
T ss_pred cCCccccChhhHHHHHHHHHHHH-HHh---CCEEEEEec--CHHHHHhhh-----ceEEEecC-----------------
Confidence 47999998888888887665432 122 235778877 478999752 23456663
Q ss_pred cccCcCCeEEEEEeHHHHHH--------HHhCCCCCCCCCCCcchHHhhhccccccccccCC--CCCeeEEeCCCCCHHH
Q 046022 87 QTGAVRKHYIGMLTMLDILA--------HIAGDDQMNGSDDAPDDLDKKMSAPVSSIIGHCP--EGLSLWTLSPNTSILD 156 (262)
Q Consensus 87 ~~~~~~~~~vGivs~~Dil~--------~l~~~~~l~~~~~~~~~~~~~~~~~V~~im~~~~--~~~~~~~v~~~~sL~~ 156 (262)
|+++-+=+...|++ .+.+.... .+.......+.+.|-... .+ -.+....+..+
T Consensus 212 ------G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~--------~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 274 (309)
T COG1125 212 ------GEIVQYDTPDEILANPANDFVEDFFGESER--------GLRLLSLVSVADAVRRGEPADG---EPLLEGFVDRD 274 (309)
T ss_pred ------CeEEEeCCHHHHHhCccHHHHHHHhccccc--------cccccchhhHHHhhcccccccC---CccccchhhHH
Confidence 56777767554444 33332110 000001123333332100 01 11233334444
Q ss_pred HHH-HHhcCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHH
Q 046022 157 CME-VFSKGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRF 202 (262)
Q Consensus 157 a~~-~m~~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~ 202 (262)
++. .|..+..-+||+ ++ +|+++|.||+.+++.+
T Consensus 275 ~ls~~~~~~~~~~~Vv-d~------------~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 275 ALSDFLARGRSVLPVV-DE------------DGRPLGTVTRADLLDE 308 (309)
T ss_pred HHHHHHhcCCceeEEE-CC------------CCcEeeEEEHHHHhhh
Confidence 555 445788888985 42 2456799999999864
No 207
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=68.87 E-value=28 Score=35.08 Aligned_cols=102 Identities=12% Similarity=0.188 Sum_probs=69.2
Q ss_pred eEEeCCC-CCHHHHHHHHh-cCCCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhccc--------c---h
Q 046022 145 LWTLSPN-TSILDCMEVFS-KGIHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHASE--------L---K 211 (262)
Q Consensus 145 ~~~v~~~-~sL~~a~~~m~-~g~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~~~--------l---~ 211 (262)
+..+..+ .++.|...+|. ......||+.+++..++ +|+++++|+.-.+.+.... + +
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~l-----------vGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~ 626 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRL-----------VGFVLRRNLFLAILNARKIQSFIVTTSIYFND 626 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEcccccee-----------EEEEchHHHHHHHhhhccccccceecccccCC
Confidence 4555554 89999998988 45567899776543333 5999999998776642211 0 1
Q ss_pred hhh------ccccchhcccCcCeEEEeCCCcHHHHHHHHHhCCCcEEEEEcC
Q 046022 212 DIT------SHSIRELGALNENVFAITESTKVIDAIKCMRAALLHAVPIVKS 257 (262)
Q Consensus 212 ~l~------~~ti~eL~~~~~~v~tv~~~~~~~~A~~lM~~~~isav~VVd~ 257 (262)
+.+ ..+++=-.+++..++++...+|+.-.+.+.++-+++.+.|..+
T Consensus 627 ~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~ 678 (696)
T KOG0475|consen 627 PSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTKN 678 (696)
T ss_pred CCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEccC
Confidence 110 1112112257778999999999999999999999988877643
No 208
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=64.65 E-value=14 Score=34.43 Aligned_cols=50 Identities=16% Similarity=0.336 Sum_probs=40.7
Q ss_pred CcEEEEcCCCCHHHHHHHHHhCCCceEEEecCCCCcccCCCcccccccccccCcCCeEEEEEeHHHHHHHHhC
Q 046022 38 RRIVEVPHTASLAHTMNALVANKVVAVPVAAPPGQWIGAGGSMIMESDKQTGAVRKHYIGMLTMLDILAHIAG 110 (262)
Q Consensus 38 ~~lv~v~~~~tv~eA~~~L~~~~i~s~PVvd~~~~~~~~~~~~~~~~d~~~~~~~~~~vGivs~~Dil~~l~~ 110 (262)
+++.++++++++.+-+....+.. ..+||+|++ ++|+|+++...++..+..
T Consensus 335 ~~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~----------------------~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 335 DDVLTVDADTPLSEILARIRQAP-CPVAVVDED----------------------GRYVGIISRGELLEALAR 384 (386)
T ss_pred ccccccCccchHHHHHHHHhcCC-CceeEEcCC----------------------CcEEEEecHHHHHHHHhc
Confidence 35678888999988887777766 467899875 699999999999888764
No 209
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=46.15 E-value=31 Score=35.71 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=49.5
Q ss_pred ccccccccccCCCCCeeEEeCCCCCHHHHHHHHhcC-CCeeEeecCCCCcccccceecccCCeeeEecHHHHHHHHHhhc
Q 046022 129 SAPVSSIIGHCPEGLSLWTLSPNTSILDCMEVFSKG-IHRALVPMDSRMENISGVELVESASSYQMLTQMDLLRFMMNHA 207 (262)
Q Consensus 129 ~~~V~~im~~~~~~~~~~~v~~~~sL~~a~~~m~~g-~~rv~V~~~~~~~~~~g~~~~~~~~~~giITqsDIir~L~~~~ 207 (262)
...|.++|-. + +..+..+++..|.-+.+..+ ++-+|++.+.+.-. .+|.|+++.+.++|..|+
T Consensus 587 ~v~VE~iMV~---d--v~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmi-----------LlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 587 TVKVEHIMVT---D--VKYITKDTTYRELREALQTTTLRSFPLVESKESMI-----------LLGSVARRYLTALLQRHI 650 (931)
T ss_pred EEEeeeeccc---c--ceeeeccCcHHHHHHHHHhCccceeccccCcccce-----------eeehhHHHHHHHHHHhhc
Confidence 4468889973 3 68899999999999988744 99999975433222 359999999999998876
Q ss_pred c
Q 046022 208 S 208 (262)
Q Consensus 208 ~ 208 (262)
+
T Consensus 651 g 651 (931)
T KOG0476|consen 651 G 651 (931)
T ss_pred C
Confidence 4
Done!