BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046024
(581 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 317
Score = 295 bits (756), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 156/313 (49%), Positives = 193/313 (61%), Gaps = 12/313 (3%)
Query: 280 DSTVAQDGSGDYHTIEAAVAALPKKSPTRFVIYVKKGTYRENVILDKSKWNVMMYGDGKT 339
++ VAQDG+GDY T+ AVAA P KS TR+VIYVK+GTY+ENV + +K N+M+ GDG
Sbjct: 4 NAVVAQDGTGDYQTLAEAVAAAPDKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMY 63
Query: 340 VTVVSGSLNFVDGXXXXXXXXXXXXGRGFIAKDMTFINTAGPEKHQAVAFRSGLRPFSI- 398
T ++GSLN VDG G+GFI +D+ NTAGP K QAVA R G I
Sbjct: 64 ATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVIN 123
Query: 399 ------LSDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIMPRQPLPNQFNTITA 452
DTLYAHS RQFYRD +TGT+DFIFGNAAVVFQ C ++ R+P Q N +TA
Sbjct: 124 RCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVTA 183
Query: 453 QGKKDPNQNTGISIQKCTL---SRLDDKLTA-ATYLGRPWKEFSTTVIMQSTIGPFLNAL 508
QG+ DPNQ TG SIQ C + S L+ L TYLGRPWKE+S TV+M+S +G +N
Sbjct: 184 QGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPA 243
Query: 509 GWKEWVSGVDPPTSIFYAEYQNVGLASNTSGRVKWAGYRPTLTIDEAAKFTVGNFIQGSE 568
GW EW G +++Y E+ N G + TS RVKW GY +A FTV IQG
Sbjct: 244 GWAEW-DGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGS 302
Query: 569 WLAEANVQYQESL 581
WL V Y + L
Sbjct: 303 WLRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot
Length = 319
Score = 292 bits (748), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 153/303 (50%), Positives = 192/303 (63%), Gaps = 12/303 (3%)
Query: 279 PDSTVAQDGSGDYHTIEAAVAALPKKSPTRFVIYVKKGTYRENVILDKSKWNVMMYGDGK 338
P+ VA DGSGDY T+ AVAA P+ S TR+VI +K G YRENV + K K N+M GDG+
Sbjct: 7 PNVVVAADGSGDYKTVSEAVAAAPEDSKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGR 66
Query: 339 TVTVVSGSLNFVDGXXXXXXXXXXXXGRGFIAKDMTFINTAGPEKHQAVAFRSG--LRPF 396
T T+++ S N DG G GF+A+D+TF NTAG KHQAVA R G L F
Sbjct: 67 TSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAF 126
Query: 397 ---SILS--DTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIMPRQPLPNQFNTIT 451
IL+ D+LY HSNRQF+ +C I GT+DFIFGNAAVV Q+C+I R+P Q N +T
Sbjct: 127 YRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVT 186
Query: 452 AQGKKDPNQNTGISIQKCTLSRLDD----KLTAATYLGRPWKEFSTTVIMQSTIGPFLNA 507
AQG+ DPNQNTGI IQK + D + + TYLGRPWKE+S TV+MQS+I +N
Sbjct: 187 AQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINP 246
Query: 508 LGWKEWVSGVDPPTSIFYAEYQNVGLASNTSGRVKWAGYRPTLTIDEAAKFTVGNFIQGS 567
GW W G +++Y EYQN G + TSGRV W G++ + EA FT G+FI G
Sbjct: 247 AGWFPW-DGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGG 305
Query: 568 EWL 570
WL
Sbjct: 306 SWL 308
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTB|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide V
pdb|2NTP|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTP|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vi
pdb|2NTQ|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
pdb|2NTQ|B Chain B, Crystal Structure Of Pectin Methylesterase In Complex With
Hexasaccharide Vii
Length = 342
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 141/325 (43%), Gaps = 69/325 (21%)
Query: 291 YHTIEAAVAALPKKSPTRFVIYVKKGTYRENVILDKSKWNVMMYGDGKTVTVVSGSLNFV 350
+ TI A+A+ P S T FVI +K G Y E + + ++ N+ + G+ + V++ +
Sbjct: 18 FKTIADAIASAPAGS-TPFVILIKNGVYNERLTITRN--NLHLKGESRNGAVIAAATAAG 74
Query: 351 ----DGXX--XXXXXXXXXXGRGFIAKDMTFIN--------------TAGPEKHQAVAF- 389
DG + F A+ +T N ++ + QAVA
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 390 --RSGLRPF----SILS--DTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIMPRQ 441
+SG R + S++ DTLY R F+ DC I+GT+DFIFG+ +F NC+++ R
Sbjct: 135 VTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRY 194
Query: 442 PLPNQFNTITA---QGKKDPNQNTGISIQKCTLSRLDDKLTAATY-LGRPWKEFST---- 493
+ ++ + NQ G+ I + R D + A +Y LGRPW +T
Sbjct: 195 RADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFSDG 254
Query: 494 ----------TVIMQSTIGPFLNALGWKEWVSGVD---------PPTSIFYAEYQNVGLA 534
TV + +++ + GW + +SG D P S F+ EY++ G
Sbjct: 255 RYADPNAIGQTVFLNTSMDNHI--YGWDK-MSGKDKNGNTIWFNPEDSRFF-EYKSYGAG 310
Query: 535 SNTSGRVKWAGYRPTLTIDEAAKFT 559
+ S R LT +AA++T
Sbjct: 311 ATVSKD------RRQLTDAQAAEYT 329
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi
pdb|1QJV|B Chain B, Pectin Methylesterase Pema From Erwinia Chrysanthemi
Length = 342
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 141/325 (43%), Gaps = 69/325 (21%)
Query: 291 YHTIEAAVAALPKKSPTRFVIYVKKGTYRENVILDKSKWNVMMYGDGKTVTVVSGSLNFV 350
+ TI A+A+ P S T FVI +K G Y E + + ++ N+ + G+ + V++ +
Sbjct: 18 FKTIADAIASAPAGS-TPFVILIKNGVYNERLTITRN--NLHLKGESRNGAVIAAATAAG 74
Query: 351 ----DGXX--XXXXXXXXXXGRGFIAKDMTFIN--------------TAGPEKHQAVAF- 389
DG + F A+ +T N ++ + QAVA
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 390 --RSGLRPF----SILS--DTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIMPRQ 441
+SG R + S++ DTLY R F+ DC I+GT+DFIFG+ +F NC+++ R
Sbjct: 135 VTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRY 194
Query: 442 PLPNQFNTITA---QGKKDPNQNTGISIQKCTLSRLDDKLTAATY-LGRPWKEFST---- 493
+ ++ + NQ G+ I + R D + A +Y LGRPW +T
Sbjct: 195 RADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFSDG 254
Query: 494 ----------TVIMQSTIGPFLNALGWKEWVSGVD---------PPTSIFYAEYQNVGLA 534
TV + +++ + GW + +SG D P S F+ EY++ G
Sbjct: 255 RYADPNAIGQTVFLNTSMDNHI--YGWDK-MSGKDKNGNTIWFNPEDSRFF-EYKSYGAG 310
Query: 535 SNTSGRVKWAGYRPTLTIDEAAKFT 559
+ S R LT +AA++T
Sbjct: 311 AAVSKD------RRQLTDAQAAEYT 329
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NSP|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide I
pdb|2NST|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NST|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Ii
pdb|2NT6|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT6|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iii
pdb|2NT9|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
pdb|2NT9|B Chain B, Crystal Structure Of Pectin Methylesterase D178a Mutant In
Complex With Hexasaccharide Iv
Length = 342
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 140/325 (43%), Gaps = 69/325 (21%)
Query: 291 YHTIEAAVAALPKKSPTRFVIYVKKGTYRENVILDKSKWNVMMYGDGKTVTVVSGSLNFV 350
+ TI A+A+ P S T FVI +K G Y E + + ++ N+ + G+ + V++ +
Sbjct: 18 FKTIADAIASAPAGS-TPFVILIKNGVYNERLTITRN--NLHLKGESRNGAVIAAATAAG 74
Query: 351 ----DGXX--XXXXXXXXXXGRGFIAKDMTFIN--------------TAGPEKHQAVAF- 389
DG + F A+ +T N ++ + QAVA
Sbjct: 75 TLKSDGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALY 134
Query: 390 --RSGLRPF----SILS--DTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIMPRQ 441
+SG R + S++ TLY R F+ DC I+GT+DFIFG+ +F NC+++ R
Sbjct: 135 VTKSGDRAYFKDVSLVGYQATLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRY 194
Query: 442 PLPNQFNTITA---QGKKDPNQNTGISIQKCTLSRLDDKLTAATY-LGRPWKEFST---- 493
+ ++ + NQ G+ I + R D + A +Y LGRPW +T
Sbjct: 195 RADVKSGNVSGYLTAPSTNINQKYGLVITNSRVIRESDSVPAKSYGLGRPWHPTTTFSDG 254
Query: 494 ----------TVIMQSTIGPFLNALGWKEWVSGVD---------PPTSIFYAEYQNVGLA 534
TV + +++ + GW + +SG D P S F+ EY++ G
Sbjct: 255 RYADPNAIGQTVFLNTSMDNHI--YGWDK-MSGKDKNGNTIWFNPEDSRFF-EYKSYGAG 310
Query: 535 SNTSGRVKWAGYRPTLTIDEAAKFT 559
+ S R LT +AA++T
Sbjct: 311 ATVSKD------RRQLTDAQAAEYT 329
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica
Length = 364
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 114/271 (42%), Gaps = 50/271 (18%)
Query: 263 WVGAGDRRLLQEANP-KPDSTVAQDGSGD-YHTIEAAVAALPKKSPTRFVIYVKKGTYRE 320
W+G +L N + ++ V+ GD + +I AA+ + PK T F+I++K G Y E
Sbjct: 14 WLGLISFAVLGTVNAAQYNAVVSTTPQGDEFSSINAALKSAPKDD-TPFIIFLKNGVYTE 72
Query: 321 NVILDKSKWNVMMYGDGKTVTVVSGSLNFVDGXXXXXXXXXXXXGRG--------FIAKD 372
L+ ++ +V + G+ + TV+ N G G F A++
Sbjct: 73 R--LEVARSHVTLKGENRDGTVIGA--NTAAGMLNPQGEKWGTSGSSTVLVNAPNFTAEN 128
Query: 373 MTFINT-----------AGPEK---HQAVAF---------RSGLRPFSILSDTLYAHS-N 408
+T N P K QAVA R DTLY+ + +
Sbjct: 129 LTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKTGS 188
Query: 409 RQFYRDCDITGTIDFIFGNAAVVFQNCNIMP--RQPLPNQFNTITAQGKKDPNQNT---- 462
R ++ DC+I+G +DFIFG+ VF NCNI+ R + + ITA P+ T
Sbjct: 189 RSYFSDCEISGHVDFIFGSGITVFDNCNIVARDRSDIEPPYGYITA-----PSTLTTSPY 243
Query: 463 GISIQKCTLSRLDDKLTAATYLGRPWKEFST 493
G+ L++ + LGRPW +T
Sbjct: 244 GLIFINSRLTKEPGVPANSFALGRPWHPTTT 274
>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
Length = 769
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 178 QDLKTWLSTSITDQDTCLDALQELNASHYENSNILKDIRSAMQNSTEFASNSL 230
+DL WL +T++D ++E N +LK IRS +Q + E A +S+
Sbjct: 699 KDLAEWLEKQLTEEDGVHSVIEE-NIKCISRDYVLKQIRSLVQANPEVAMDSI 750
>pdb|3GRH|A Chain A, Crystal Structure Of Escherichia Coli Ybhc
Length = 422
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 278 KPDSTVAQDGS-GDYHT-IEAAV-AALPKKSPTRFVIYVKKGTYRENVILDKSKWNVMMY 334
+PD V G+ G HT I+AAV AA+ K++ R I V G Y+ V + + + +Y
Sbjct: 74 QPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLY 133
Query: 335 GDGK 338
G G+
Sbjct: 134 GTGE 137
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 10/125 (8%)
Query: 75 LKAVCSVTRYPXXXXXXXXXXXXXNVTKDPEILFKLSLQVAMNELEKLQNYPSKLKQQTK 134
+ +C TR P + +KD + L + S+ +A ++ + L Q
Sbjct: 6 ISEICPKTRNPSLCLQALESDPR-SASKDLKGLGQFSIDIAQASAKQTSKIIASLTNQAT 64
Query: 135 DPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDLKTWLSTSITDQDTC 194
DP++ + C + DA+D +G ++ L+S L + S + TC
Sbjct: 65 DPKLKGRYETCSENYADAID---------SLGQAKQFLTSGDYNSLNIYASAAFDGAGTC 115
Query: 195 LDALQ 199
D+ +
Sbjct: 116 EDSFE 120
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 9/40 (22%)
Query: 397 SILSDTLYA---------HSNRQFYRDCDITGTIDFIFGN 427
SI+ + LYA N+ + DC +GTIDF FGN
Sbjct: 229 SIVRNILYAIGAQMKFDSAGNKVYVADCKTSGTIDFQFGN 268
>pdb|3OQB|A Chain A, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|B Chain B, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|C Chain C, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|D Chain D, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|E Chain E, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|F Chain F, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|G Chain G, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|H Chain H, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
Length = 383
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 382 EKHQAVAFRSGLRPFSILSDTLYAHSNRQF----YRDCDITGTIDFIFGNAAVVFQNCNI 437
+K++A A S F L + AH N + YRD +T +D G+A +C I
Sbjct: 237 KKYKATADDSAYATFQ-LEGGVIAHINXSWVTRVYRDDLVTFQVDGTHGSAVAGLSDCXI 295
Query: 438 MPRQPLP 444
RQ P
Sbjct: 296 QARQATP 302
>pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo
Iv (Pare-Parc Fusion Truncate)
Length = 767
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 63/168 (37%), Gaps = 31/168 (18%)
Query: 128 KLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDLKTWLSTS 187
+L++ T DP ++ + DDA + G +KLL+ K+ D K WL
Sbjct: 204 QLRETTMDPNT---RRLVQLDLDDA---------HLTAGLLDKLLAKKRAADRKQWLEQK 251
Query: 188 ITDQD-TCLDALQELNASHY--ENSNILKDIRSAMQNSTEFASNSLAIGSKILGLLGKVD 244
D T D L + +H+ EN ++ + A N + A+ GL
Sbjct: 252 GNLADITVEDKLTMTSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLK---- 307
Query: 245 IPVHRRLLSYYSDSGFPNWVGAGDRRLLQEANPKPDSTVAQDGSGDYH 292
PV RR++ S+ G L PK + D G YH
Sbjct: 308 -PVQRRIVYAMSELG-----------LKSSGKPKKSARTVGDVLGKYH 343
>pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
Topo Iv (Pare-Parc Fusion Truncate)
pdb|2XKK|C Chain C, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii
Topo Iv (Pare-Parc Fusion Truncate)
Length = 767
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 63/168 (37%), Gaps = 31/168 (18%)
Query: 128 KLKQQTKDPQVIEALKVCETLFDDALDHVNESLSSMQVGSGEKLLSSKKIQDLKTWLSTS 187
+L++ T DP ++ + DDA + G +KLL+ K+ D K WL
Sbjct: 204 QLRETTMDPNT---RRLVQLDLDDA---------HLTAGLLDKLLAKKRAADRKQWLEQK 251
Query: 188 ITDQD-TCLDALQELNASHY--ENSNILKDIRSAMQNSTEFASNSLAIGSKILGLLGKVD 244
D T D L + +H+ EN ++ + A N + A+ GL
Sbjct: 252 GNLADITVEDKLTMTSLAHHATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLK---- 307
Query: 245 IPVHRRLLSYYSDSGFPNWVGAGDRRLLQEANPKPDSTVAQDGSGDYH 292
PV RR++ S+ G L PK + D G YH
Sbjct: 308 -PVQRRIVYAMSELG-----------LKSSGKPKKSARTVGDVLGKYH 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,312,593
Number of Sequences: 62578
Number of extensions: 588992
Number of successful extensions: 1398
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1379
Number of HSP's gapped (non-prelim): 20
length of query: 581
length of database: 14,973,337
effective HSP length: 104
effective length of query: 477
effective length of database: 8,465,225
effective search space: 4037912325
effective search space used: 4037912325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)