BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046027
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 160/271 (59%), Gaps = 24/271 (8%)
Query: 28 APESALVSQLPGFHGSLPSKHYSGYVTIVDSAKTEKNLFYYFVVSERNPSKDPVVLWLNG 87
AP+ + +LPG + YSGY+ + K+L Y+FV S+++P PVVLWLNG
Sbjct: 1 APDQDEIQRLPGLAKQPSFRQYSGYL----KSSGSKHLHYWFVESQKDPENSPVVLWLNG 56
Query: 88 GPGCSSLDGFIYEHGPFNFEAGKSKGRMPILHLNPYSWSKVSNVLYLDSPAGVGFSYSKN 147
GPGCSSLDG + EHGPF + L NPYSW+ ++NVLYL+SPAGVGFSYS +
Sbjct: 57 GPGCSSLDGLLTEHGPFLVQPDGV-----TLEYNPYSWNLIANVLYLESPAGVGFSYSDD 111
Query: 148 TSLYITGDKQTASDTQKFLLKWFQEYPEFVSNPFFVSGESYAGVYVPTLSAQIVNGIKSG 207
Y T D + A + L +F+ +PE+ +N F++GESYAG+Y+PTL+ ++
Sbjct: 112 -KFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM------ 164
Query: 208 EKPVINFKGYMVGNGVTDEEFDGNALVPFTHGMSLISDKIFEETKAAC----KGKFYQID 263
+ P +N +G VGNG++ E + N+LV F + L+ ++++ + C K FY D
Sbjct: 165 QDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFY--D 222
Query: 264 ENNGSCSTMLLKIDLLVND--INIYDILEPC 292
+ C T L ++ +V + +NIY++ PC
Sbjct: 223 NKDLECVTNLQEVARIVGNSGLNIYNLYAPC 253
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 159/271 (58%), Gaps = 24/271 (8%)
Query: 28 APESALVSQLPGFHGSLPSKHYSGYVTIVDSAKTEKNLFYYFVVSERNPSKDPVVLWLNG 87
AP+ + +LPG + YSGY+ K+L Y+FV S+++P PVVLWLNG
Sbjct: 3 APDQDEIQRLPGLAKQPSFRQYSGYL----KGSGSKHLHYWFVESQKDPENSPVVLWLNG 58
Query: 88 GPGCSSLDGFIYEHGPFNFEAGKSKGRMPILHLNPYSWSKVSNVLYLDSPAGVGFSYSKN 147
GPGCSSLDG + EHGPF + L NPYSW+ ++NVLYL+SPAGVGFSYS +
Sbjct: 59 GPGCSSLDGLLTEHGPFLVQPDGV-----TLEYNPYSWNLIANVLYLESPAGVGFSYSDD 113
Query: 148 TSLYITGDKQTASDTQKFLLKWFQEYPEFVSNPFFVSGESYAGVYVPTLSAQIVNGIKSG 207
Y T D + A + L +F+ +PE+ +N F++GESYAG+Y+PTL+ ++
Sbjct: 114 -KFYATNDTEVAQSNFEALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLVM------ 166
Query: 208 EKPVINFKGYMVGNGVTDEEFDGNALVPFTHGMSLISDKIFEETKAAC----KGKFYQID 263
+ P +N +G VGNG++ E + N+LV F + L+ ++++ + C K FY D
Sbjct: 167 QDPSMNLQGLAVGNGLSSYEQNDNSLVYFAYYHGLLGNRLWSSLQTHCCSQNKCNFY--D 224
Query: 264 ENNGSCSTMLLKIDLLVND--INIYDILEPC 292
+ C T L ++ +V + +NIY++ PC
Sbjct: 225 NKDLECVTNLQEVARIVGNSGLNIYNLYAPC 255
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 138/224 (61%), Gaps = 14/224 (6%)
Query: 34 VSQLPGFHGSLPSKHYSGYVTIVDSAKTEKNLFYYFVVSERNPSKDPVVLWLNGGPGCSS 93
+++LPG ++ YSGY+T+ + A ++LFY + + P+VLWLNGGPGCSS
Sbjct: 7 IARLPG-QPAVDFDMYSGYITVDEGAG--RSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 63
Query: 94 LD-GFIYEHGPFNFEAGKSKGRMPILHLNPYSWSKVSNVLYLDSPAGVGFSYSKNTS-LY 151
+ G E G F + K R L LN Y W+KV+NVL+LDSPAGVGFSY+ +S +Y
Sbjct: 64 VAYGASEELGAF-----RVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIY 118
Query: 152 ITGDKQTASDTQKFLLKWFQEYPEFVSNPFFVSGESYAGVYVPTLSAQIVNGIKSGEKPV 211
+GD +TA D+ FL KWF+ +P + F+++GESYAG YVP LS Q+V+ K+ PV
Sbjct: 119 TSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS-QLVHRSKN---PV 174
Query: 212 INFKGYMVGNGVTDEEFDGNALVPFTHGMSLISDKIFEETKAAC 255
IN KG+MVGNG+ D+ D F ++SD + K AC
Sbjct: 175 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 218
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 138/224 (61%), Gaps = 14/224 (6%)
Query: 34 VSQLPGFHGSLPSKHYSGYVTIVDSAKTEKNLFYYFVVSERNPSKDPVVLWLNGGPGCSS 93
+++LPG ++ YSGY+T+ + A ++LFY + + P+VLWLNGGPGCSS
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAG--RSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 94 LD-GFIYEHGPFNFEAGKSKGRMPILHLNPYSWSKVSNVLYLDSPAGVGFSYSKNTS-LY 151
+ G E G F + K R L LN Y W+KV+NVL+LDSPAGVGFSY+ +S +Y
Sbjct: 68 VAYGASEELGAF-----RVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIY 122
Query: 152 ITGDKQTASDTQKFLLKWFQEYPEFVSNPFFVSGESYAGVYVPTLSAQIVNGIKSGEKPV 211
+GD +TA D+ FL KWF+ +P + F+++GESYAG YVP LS Q+V+ K+ PV
Sbjct: 123 TSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS-QLVHRSKN---PV 178
Query: 212 INFKGYMVGNGVTDEEFDGNALVPFTHGMSLISDKIFEETKAAC 255
IN KG+MVGNG+ D+ D F ++SD + K AC
Sbjct: 179 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 222
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 138/224 (61%), Gaps = 14/224 (6%)
Query: 34 VSQLPGFHGSLPSKHYSGYVTIVDSAKTEKNLFYYFVVSERNPSKDPVVLWLNGGPGCSS 93
+++LPG ++ YSGY+T+ + A ++LFY + + P+VLWLNGGPGCSS
Sbjct: 6 IARLPG-QPAVDFDMYSGYITVDEGAG--RSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 62
Query: 94 LD-GFIYEHGPFNFEAGKSKGRMPILHLNPYSWSKVSNVLYLDSPAGVGFSYSKNTS-LY 151
+ G E G F + K R L LN Y W+KV+NVL+LDSPAGVGFSY+ +S +Y
Sbjct: 63 VAYGASEELGAF-----RVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIY 117
Query: 152 ITGDKQTASDTQKFLLKWFQEYPEFVSNPFFVSGESYAGVYVPTLSAQIVNGIKSGEKPV 211
+GD +TA D+ FL KWF+ +P + F+++GESYAG YVP LS Q+V+ K+ PV
Sbjct: 118 TSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS-QLVHRSKN---PV 173
Query: 212 INFKGYMVGNGVTDEEFDGNALVPFTHGMSLISDKIFEETKAAC 255
IN KG+MVGNG+ D+ D F ++SD + K AC
Sbjct: 174 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 217
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 167 bits (424), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 137/224 (61%), Gaps = 14/224 (6%)
Query: 34 VSQLPGFHGSLPSKHYSGYVTIVDSAKTEKNLFYYFVVSERNPSKDPVVLWLNGGPGCSS 93
+++LPG ++ YSGY+T+ + A ++LFY + + P+VLWLNGGPGCSS
Sbjct: 11 IARLPG-QPAVDFDMYSGYITVDEGAG--RSLFYLLQEAPEDAQPAPLVLWLNGGPGCSS 67
Query: 94 LD-GFIYEHGPFNFEAGKSKGRMPILHLNPYSWSKVSNVLYLDSPAGVGFSYSKNTS-LY 151
+ G E G F + + L LN Y W+KV+NVL+LDSPAGVGFSY+ +S +Y
Sbjct: 68 VAYGASEELGAFRVKPAGAG-----LVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIY 122
Query: 152 ITGDKQTASDTQKFLLKWFQEYPEFVSNPFFVSGESYAGVYVPTLSAQIVNGIKSGEKPV 211
+GD +TA D+ FL KWF+ +P + F+++GESYAG YVP LS Q+V+ K+ PV
Sbjct: 123 TSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYAGHYVPELS-QLVHRSKN---PV 178
Query: 212 INFKGYMVGNGVTDEEFDGNALVPFTHGMSLISDKIFEETKAAC 255
IN KG+MVGNG+ D+ D F ++SD + K AC
Sbjct: 179 INLKGFMVGNGLIDDYHDYVGTFEFWWNHGIVSDDTYRRLKEAC 222
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 137/271 (50%), Gaps = 16/271 (5%)
Query: 30 ESALVSQLPGFHGSLPSKHYSGYVTIVDSAKTEKNLFYYFV-VSERNPSKDPVVLWLNGG 88
E + LPG + Y GYVTI D+ + L+Y+F +P+ P+VLWLNGG
Sbjct: 6 EDDRILGLPGQPNGVAFGMYGGYVTIDDN--NGRALYYWFQEADTADPAAAPLVLWLNGG 63
Query: 89 PGCSSLD-GFIYEHGPFNFEAGKSKGRMPILHLNPYSWSKVSNVLYLDSPAGVGFSYSKN 147
PGCSS+ G + E G F L LN Y+W+K +N+L+ +SPAGVGFSYS
Sbjct: 64 PGCSSIGLGAMQELGAFRVHTNGES-----LLLNEYAWNKAANILFAESPAGVGFSYSNT 118
Query: 148 TSLYITGDKQTASDTQKFLLKWFQEYPEFVSNPFFVSGESYAGVYVPTLSAQIVNGIKSG 207
+S GD + A DT FL+KWF+ +P + F+++GES G ++P LS +
Sbjct: 119 SSDLSMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYR--NRN 174
Query: 208 EKPVINFKGYMVGNGVTDEEFDGNALVPFTHGMSLISDKIFEETKAACKGKFYQIDENNG 267
P INF+G +V +G+T++ D + LISD+ + C G +
Sbjct: 175 NSPFINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFM--HPTP 232
Query: 268 SCSTMLLKIDLLVNDINIYDILEP-CFHSPN 297
C+ + K +IN Y I P C P+
Sbjct: 233 ECTEVWNKALAEQGNINPYTIYTPTCDREPS 263
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 108/194 (55%), Gaps = 17/194 (8%)
Query: 48 HYSGYVTIVDSAKTEKNLFYYFVVSERNPSKDPVVLWLNGGPGCSSLDGFIYEHGPFNFE 107
Y+GY+ + D +K+ F++ S +P+KDPV+LWLNGGPGCSSL G +E GP
Sbjct: 16 QYTGYLDVEDE---DKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFELGP---- 68
Query: 108 AGKSKGRMPILHLNPYSWSKVSNVLYLDSPAGVGFSYSKNTSLYITGDKQTASDTQKFLL 167
+ PI NPYSW+ + V++LD P VGFSYS ++ ++ D FL
Sbjct: 69 SSIGPDLKPI--GNPYSWNSNATVIFLDQPVNVGFSYSGSSG--VSNTVAAGKDVYNFLE 124
Query: 168 KWFQEYPEFVS--NPFFVSGESYAGVYVPTLSAQIVNGIKSGEKPVINFKGYMVGNGVTD 225
+F ++PE+V+ F ++GESYAG Y+P +++I+ S + N ++GNG+TD
Sbjct: 125 LFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEIL----SHKDRNFNLTSVLIGNGLTD 180
Query: 226 EEFDGNALVPFTHG 239
N P G
Sbjct: 181 PLTQYNYYEPMACG 194
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 17/194 (8%)
Query: 48 HYSGYVTIVDSAKTEKNLFYYFVVSERNPSKDPVVLWLNGGPGCSSLDGFIYEHGPFNFE 107
Y+GY+ + D +K+ F++ S +P+KDPV+LWLNGGPGCSSL G + GP
Sbjct: 16 QYTGYLDVEDE---DKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALGP---- 68
Query: 108 AGKSKGRMPILHLNPYSWSKVSNVLYLDSPAGVGFSYSKNTSLYITGDKQTASDTQKFLL 167
+ PI NPYSW+ + V++LD P VGFSYS ++ ++ D FL
Sbjct: 69 SSIGPDLKPI--GNPYSWNSNATVIFLDQPVNVGFSYSGSSG--VSNTVAAGKDVYNFLE 124
Query: 168 KWFQEYPEFVS--NPFFVSGESYAGVYVPTLSAQIVNGIKSGEKPVINFKGYMVGNGVTD 225
+F ++PE+V+ F ++G SYAG Y+P +++I+ S + N ++GNG+TD
Sbjct: 125 LFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEIL----SHKDRNFNLTSVLIGNGLTD 180
Query: 226 EEFDGNALVPFTHG 239
N P G
Sbjct: 181 PLTQYNYYEPMACG 194
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 110/222 (49%), Gaps = 20/222 (9%)
Query: 35 SQLPGFH-GSLPSKHYSGYVTIVDSAKTEKNLFYYFVVSERNPSKD-PVVLWLNGGPGCS 92
S +P H G +P + S DS+ E F+ F ++ N + D P+++WLNGGPGCS
Sbjct: 24 SNIPQMHAGHIPLR--SEDADEQDSSDLEY-FFWKFTNNDSNGNVDRPLIIWLNGGPGCS 80
Query: 93 SLDGFIYEHGPFNFEAGKSKGRMPILHLNPYSWSKVSNVLYLDSPAGVGFSYSKNTSLYI 152
S+DG + E GPF S G+ L+LN SW ++L++D P G GFS +N
Sbjct: 81 SMDGALVESGPFRV---NSDGK---LYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGK 134
Query: 153 TGDKQTASDTQ-------KFLLKWFQEYPEFVSNPFFVSGESYAGVYVPTLSAQIVNGIK 205
+ D + FL +F+ +PE ++ +SGESYAG Y+P + I+N K
Sbjct: 135 IDKNKFDEDLEDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNK 194
Query: 206 SG--EKPVINFKGYMVGNGVTDEEFDGNALVPFTHGMSLISD 245
+ + K ++GNG D + +PF LI +
Sbjct: 195 FSKIDGDTYDLKALLIGNGWIDPNTQSLSYLPFAMEKKLIDE 236
>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|B Chain B, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|C Chain C, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|D Chain D, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|E Chain E, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
pdb|2BZR|F Chain F, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
Length = 548
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 129 SNVLYLDSPAGVGFSYSKNTSLYITGDKQTASDTQKFLLKWFQEYPEFVSNPFFVSGESY 188
+ + + + VGF Y + + D K L+ QEY + + NP+ + Y
Sbjct: 455 AQIAVMGASGAVGFVYRQQ----LAEAAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGY 510
Query: 189 AGVYVP 194
G +P
Sbjct: 511 VGAVIP 516
>pdb|3KD3|A Chain A, Crystal Structure Of A Phosphoserine Phosphohydrolase-Like
Protein From Francisella Tularensis Subsp. Tularensis
Schu S4
pdb|3KD3|B Chain B, Crystal Structure Of A Phosphoserine Phosphohydrolase-Like
Protein From Francisella Tularensis Subsp. Tularensis
Schu S4
Length = 219
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 177 VSNPFFVSGESYAGVYVPTLSAQIVNGIKSGEKPVIN--FKGYMVGNGVTDEEFDGNALV 234
+++P S + ++ Y P L + +GIK + + N F+ ++ G+++ ++
Sbjct: 63 IASPTKQSIKEFSNKYCPNL---LTDGIKELVQDLKNKGFEIWIFSGGLSE------SIQ 113
Query: 235 PFTHGMSLISDKIFE-ETKAACKGKFYQIDENNGSCSTMLLKID 277
PF +++ + IF ET G F ++D +NG+C + L D
Sbjct: 114 PFADYLNIPRENIFAVETIWNSDGSFKELDNSNGACDSKLSAFD 157
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 181 FFVSGESYAGVYVPTLSAQIVNGIKSGEKPVINFKGYMVGNG 222
++ E A YVPTL I NGI S + ++ G ++ +G
Sbjct: 641 YYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDG 682
>pdb|2CT9|A Chain A, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
pdb|2CT9|B Chain B, The Crystal Structure Of Calcineurin B Homologous Proein 1
(Chp1)
Length = 208
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 15/79 (18%)
Query: 140 VGFSYSKNTSLYITGDKQTASDTQKFLLKWFQEYPEFVSNPFFVSGESYAGVYVPTLSAQ 199
GFS+S+ T LY + + FQ PE NP L +
Sbjct: 21 TGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINP---------------LGDR 65
Query: 200 IVNGIKSGEKPVINFKGYM 218
I+N S + +NF+G+M
Sbjct: 66 IINAFFSEGEDQVNFRGFM 84
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 313 SNVPKSFQELGQTEKPMPVRKRIFGRAWPFRAPVREGHVPTWPEILR 359
S P+ +L T K + + + AWPF PV+ P + E++R
Sbjct: 5 SKEPRDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIR 51
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 312 NSNVPKSFQELGQTEKPMPVRKRIFGRAWPFRAPVREGHVPTWPEILR 359
S P+ +L T K + + + AWPF PV+ P + E++R
Sbjct: 6 KSKEPRDPDQLYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIR 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,322,837
Number of Sequences: 62578
Number of extensions: 567107
Number of successful extensions: 1104
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1057
Number of HSP's gapped (non-prelim): 19
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)