BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046028
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%)
Query: 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
+G L+ LNL HN ++GSIP G+L+ + LDLS+N L G+I
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPL 94
G IP Q ++F P + N GL G PL
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA 47
+GR +L L LS+N+ +G+IP+ G+ + + LDL+TN +G I A
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXXXXXXXV 66
L +L+LS N L+G+IPSS G+L + L L N L G+I +
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479
Query: 67 GKIPT 71
G+IP+
Sbjct: 480 GEIPS 484
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ 48
+ +L ++LS+N LTG IP G L+++ L LS N+ SG I A+
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Score = 33.1 bits (74), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 3 RFVSLYALNLSHNALTGSIPSSFGNLK-HIESLDLSTNNLSGKI 45
+ L L+LS N +G +P S NL + +LDLS+NN SG I
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI 45
+L L L N LTG IPS N ++ + LS N L+G+I
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI 45
+L L L +N TG IP + N + SL LS N LSG I
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI 45
+G L L L N L G IP +K +E+L L N+L+G+I
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 482
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXXXX 62
R V+L L++S N + IP G+ ++ LD+S N LSG S
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 63 XXXVGKIP 70
VG IP
Sbjct: 257 NQFVGPIP 264
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%)
Query: 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
+G L+ LNL HN ++GSIP G+L+ + LDLS+N L G+I
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPL 94
G IP Q ++F P + N GL G PL
Sbjct: 709 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 742
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA 47
+GR +L L LS+N+ +G+IP+ G+ + + LDL+TN +G I A
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXXXXXXXV 66
L +L+LS N L+G+IPSS G+L + L L N L G+I +
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 476
Query: 67 GKIPT 71
G+IP+
Sbjct: 477 GEIPS 481
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ 48
+ +L ++LS+N LTG IP G L+++ L LS N+ SG I A+
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 3 RFVSLYALNLSHNALTGSIPSSFGNLK-HIESLDLSTNNLSGKI 45
+ L L+LS N +G +P S NL + +LDLS+NN SG I
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI 45
+L L L N LTG IPS N ++ + LS N L+G+I
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI 45
+L L L +N TG IP + N + SL LS N LSG I
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI 45
+G L L L N L G IP +K +E+L L N+L+G+I
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI 479
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXXXX 62
R V+L L++S N + IP G+ ++ LD+S N LSG S
Sbjct: 195 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 63 XXXVGKIP 70
VG IP
Sbjct: 254 NQFVGPIP 261
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 24/94 (25%)
Query: 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQXXXXXXXXXXXX 60
+G +L L+L +N + G++P LK + SL++S NNL
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL------------------- 280
Query: 61 XXXXXVGKIPTSTQLQSFSPTSYEVNKGLYGPPL 94
G+IP LQ F ++Y NK L G PL
Sbjct: 281 -----CGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Score = 32.3 bits (72), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 2 GRFVSLY-ALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA 47
G F L+ ++ +S N LTG IP +F NL ++ +DLS N L G S
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV 215
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI 45
+ + L+ L ++H ++G+IP +K + +LD S N LSG +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141
Score = 30.0 bits (66), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI 45
+ + +L L+ S+NAL+G++P S +L ++ + N +SG I
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAI 165
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 6 SLYALNLSHNALTGSIPSSFGNL-KHIESLDLSTNNLSGKI 45
+L + N ++G+IP S+G+ K S+ +S N L+GKI
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 MGRFVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNL 41
+G +L LN++HN + +P F NL ++E LDLS+N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 MGRFVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNL 41
+G +L LN++HN + +P F NL ++E LDLS+N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.9 bits (76), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 MGRFVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNL 41
+G +L LN++HN + +P F NL ++E LDLS+N +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.9 bits (76), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 MGRFVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNL 41
+G +L LN++HN + +P F NL ++E LDLS+N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.9 bits (76), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 MGRFVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNL 41
+G +L LN++HN + +P F NL ++E LDLS+N +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.5 bits (75), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 MGRFVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNL 41
+G +L LN++HN + +P F NL ++E LDLS+N +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 MGRFVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNL 41
+G +L LN++HN + +P F NL ++E LDLS+N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.1 bits (74), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 1 MGRFVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNL 41
+G +L LN++HN + +P F NL ++E LDLS+N +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLS 42
GR L L L N LTG P++F HI+ L L N +
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTN 39
L LNL N ++ +P SF +L + SL+L++N
Sbjct: 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.4 bits (67), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 1 MGRFVSLYALNLSHNAL-TGSIPSSFGNLKHIESLDLSTN 39
+G+ ++L LN++HN + + +P+ F NL ++ +DLS N
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.4 bits (67), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 1 MGRFVSLYALNLSHNAL-TGSIPSSFGNLKHIESLDLSTN 39
+G+ ++L LN++HN + + +P+ F NL ++ +DLS N
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|1UP2|A Chain A, Structure Of The Endoglucanase Cel6 From Mycobacterium
Tuberculosis In Complex With Glucose-Isofagomine At 1.9
Angstrom
Length = 294
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 2 GRFVSLYALNLSHNA 16
GRFVS YA++L+HNA
Sbjct: 278 GRFVSQYAIDLAHNA 292
>pdb|1UP0|A Chain A, Structure Of The Endoglucanase Cel6 From Mycobacterium
Tuberculosis In Complex With Cellobiose At 1.75 Angstrom
Length = 294
Score = 28.9 bits (63), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 2 GRFVSLYALNLSHNA 16
GRFVS YA++L+HNA
Sbjct: 278 GRFVSQYAIDLAHNA 292
>pdb|1UP3|A Chain A, Structure Of The Endoglucanase Cel6 From Mycobacterium
Tuberculosis In Complex With
Methyl-Cellobiosyl-4-Deoxy-4-Thio-Beta-D-Cellobioside At
1.6 Angstrom
Length = 294
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 2 GRFVSLYALNLSHNA 16
GRFVS YA++L+HNA
Sbjct: 278 GRFVSQYAIDLAHNA 292
>pdb|1UOZ|A Chain A, Structure Of The Endoglucanase Cel6 From Mycobacterium
Tuberculosis In Complex With Thiocellopentaose At 1.1
Angstrom
Length = 315
Score = 28.9 bits (63), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 11/15 (73%), Positives = 14/15 (93%)
Query: 2 GRFVSLYALNLSHNA 16
GRFVS YA++L+HNA
Sbjct: 299 GRFVSQYAIDLAHNA 313
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 7 LYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSG 43
L LNLS N L GSI S F NL +E LDLS N++
Sbjct: 325 LLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRA 361
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNL 41
+ +L LNL+HN L F L ++ LDLS N L
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ 48
L+ LNL+ N ++ +F L H+E LDL N + +++ Q
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ 48
L+ LNL+ N ++ +F L H+E LDL N + +++ Q
Sbjct: 393 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 434
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ 48
L+ LNL+ N ++ +F L H+E LDL N + +++ Q
Sbjct: 388 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 429
>pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMC|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nad+
pdb|1ZMD|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|1ZMD|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
Complexed To Nadh
pdb|2F5Z|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|B Chain B, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|C Chain C, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|D Chain D, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|E Chain E, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|F Chain F, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|G Chain G, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|H Chain H, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|I Chain I, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|J Chain J, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
Length = 474
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 67 GKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQ 99
G+IP +T+ Q+ P Y + + GP L ++++
Sbjct: 300 GRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAE 332
>pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|B Chain B, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|C Chain C, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|D Chain D, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|E Chain E, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|F Chain F, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|G Chain G, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|H Chain H, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|I Chain I, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|J Chain J, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 474
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 67 GKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQ 99
G+IP +T+ Q+ P Y + + GP L ++++
Sbjct: 300 GRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAE 332
>pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|B Chain B, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|C Chain C, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|D Chain D, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 495
Score = 26.6 bits (57), Expect = 4.8, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 67 GKIPTSTQLQSFSPTSYEVNKGLYGPPLTNESQ 99
G+IP +T+ Q+ P Y + + GP L ++++
Sbjct: 321 GRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAE 353
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNL 41
R +L++L LSHN L +F + ++ LDLS+N+L
Sbjct: 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLS 42
SL LN S N +T P NL +E LD+S+N +S
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVS 186
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNL 41
SL L L H + ++F +LK +E L+LS NNL
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTN 39
V+ LNL N++ +F +L+H+E L LS N
Sbjct: 35 VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN 69
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 26.2 bits (56), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNL 41
SL L L H + ++F +LK +E L+LS NNL
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTN 39
V+ LNL N++ +F +L+H+E L LS N
Sbjct: 35 VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN 69
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 25.4 bits (54), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 10 LNLSHNALTGSIPSSFGNLKHIESLDLSTNNL 41
LNL N + +SF +L+H+E L LS N++
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 25.4 bits (54), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNL 41
F L L L+ N + ++F L H++ L L TN L
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQL 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,961,722
Number of Sequences: 62578
Number of extensions: 76998
Number of successful extensions: 248
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 125
Number of HSP's gapped (non-prelim): 125
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)