Query 046028
Match_columns 139
No_of_seqs 195 out of 2651
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 08:04:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 99.6 1.2E-15 2.5E-20 119.2 6.8 98 2-99 439-538 (623)
2 PLN00113 leucine-rich repeat r 99.5 2.9E-14 6.3E-19 116.1 5.7 90 3-92 521-610 (968)
3 PLN00113 leucine-rich repeat r 99.3 1.9E-12 4.2E-17 105.5 4.8 92 2-93 496-588 (968)
4 PF13855 LRR_8: Leucine rich r 99.2 6.5E-12 1.4E-16 69.7 2.2 61 5-65 1-61 (61)
5 PLN03150 hypothetical protein; 99.2 4.4E-11 9.6E-16 93.8 5.7 87 7-93 420-507 (623)
6 KOG4237 Extracellular matrix p 99.0 1.2E-10 2.6E-15 85.2 2.0 92 1-92 270-362 (498)
7 KOG0617 Ras suppressor protein 98.9 1.3E-10 2.9E-15 76.8 -2.2 85 2-87 76-161 (264)
8 PF14580 LRR_9: Leucine-rich r 98.8 3.1E-09 6.8E-14 70.8 3.5 83 3-88 40-125 (175)
9 KOG4194 Membrane glycoprotein 98.7 9.4E-10 2E-14 84.2 -1.1 83 5-87 317-403 (873)
10 KOG0617 Ras suppressor protein 98.7 1.4E-09 3.1E-14 72.0 -0.4 79 3-83 31-109 (264)
11 KOG0472 Leucine-rich repeat pr 98.7 2.3E-09 4.9E-14 79.0 -0.5 84 2-88 225-309 (565)
12 KOG4194 Membrane glycoprotein 98.7 4.5E-09 9.8E-14 80.6 0.4 70 3-72 267-336 (873)
13 PF13855 LRR_8: Leucine rich r 98.7 1.1E-08 2.4E-13 56.6 1.7 59 29-87 1-60 (61)
14 KOG0444 Cytoskeletal regulator 98.6 6.3E-09 1.4E-13 80.7 0.1 86 2-89 100-186 (1255)
15 KOG0472 Leucine-rich repeat pr 98.6 1E-08 2.2E-13 75.7 0.3 86 2-89 432-541 (565)
16 PF12799 LRR_4: Leucine Rich r 98.5 9.8E-08 2.1E-12 49.3 3.0 36 6-42 2-37 (44)
17 KOG0618 Serine/threonine phosp 98.5 1.3E-08 2.8E-13 81.2 -0.8 85 3-89 381-489 (1081)
18 KOG0618 Serine/threonine phosp 98.4 4E-08 8.6E-13 78.5 -0.8 88 4-92 358-446 (1081)
19 PF12799 LRR_4: Leucine Rich r 98.4 4.3E-07 9.3E-12 46.9 3.1 39 29-68 1-39 (44)
20 KOG4579 Leucine-rich repeat (L 98.4 3.1E-08 6.7E-13 63.3 -1.5 84 3-88 51-135 (177)
21 KOG1259 Nischarin, modulator o 98.4 6E-08 1.3E-12 69.5 -0.3 63 4-69 283-345 (490)
22 PF14580 LRR_9: Leucine-rich r 98.2 2.4E-07 5.3E-12 61.8 0.3 82 3-88 17-100 (175)
23 KOG4237 Extracellular matrix p 98.2 5.3E-08 1.1E-12 71.6 -3.8 63 3-65 89-152 (498)
24 KOG4658 Apoptotic ATPase [Sign 98.1 1.4E-06 2.9E-11 71.0 1.8 83 2-85 568-651 (889)
25 PLN03210 Resistant to P. syrin 98.1 1.4E-05 3E-10 67.2 7.5 84 3-87 632-715 (1153)
26 KOG0444 Cytoskeletal regulator 98.1 4.9E-07 1.1E-11 70.5 -0.9 91 3-95 289-381 (1255)
27 KOG1259 Nischarin, modulator o 98.0 1.7E-06 3.7E-11 62.2 0.6 60 4-66 306-365 (490)
28 KOG1859 Leucine-rich repeat pr 98.0 3.1E-07 6.6E-12 72.4 -3.4 85 5-92 187-295 (1096)
29 KOG0532 Leucine-rich repeat (L 98.0 8E-07 1.7E-11 68.2 -1.2 81 7-90 168-248 (722)
30 PRK15387 E3 ubiquitin-protein 97.8 1.3E-05 2.9E-10 64.5 3.3 75 6-88 383-457 (788)
31 KOG1644 U2-associated snRNP A' 97.8 2.8E-05 6.1E-10 52.8 4.1 82 5-88 42-125 (233)
32 PRK15387 E3 ubiquitin-protein 97.8 2E-05 4.3E-10 63.5 3.0 59 6-69 403-461 (788)
33 PLN03210 Resistant to P. syrin 97.7 6.8E-05 1.5E-09 63.1 6.1 85 4-90 610-695 (1153)
34 COG4886 Leucine-rich repeat (L 97.7 1.9E-05 4.1E-10 58.9 2.4 79 6-86 141-219 (394)
35 PRK15370 E3 ubiquitin-protein 97.7 7.5E-05 1.6E-09 60.2 5.6 54 7-66 222-275 (754)
36 COG4886 Leucine-rich repeat (L 97.7 1.5E-05 3.2E-10 59.4 1.1 83 3-87 161-243 (394)
37 KOG1859 Leucine-rich repeat pr 97.7 3.2E-06 7E-11 66.8 -2.7 60 6-68 165-224 (1096)
38 cd00116 LRR_RI Leucine-rich re 97.6 1E-05 2.3E-10 58.2 -0.3 38 29-66 137-178 (319)
39 KOG0532 Leucine-rich repeat (L 97.6 8.5E-06 1.8E-10 62.8 -1.3 79 7-88 145-223 (722)
40 cd00116 LRR_RI Leucine-rich re 97.6 1.9E-05 4E-10 56.9 0.5 83 5-87 137-232 (319)
41 KOG0531 Protein phosphatase 1, 97.5 5.7E-05 1.2E-09 56.9 2.5 61 3-66 93-153 (414)
42 KOG4579 Leucine-rich repeat (L 97.5 7.1E-06 1.5E-10 52.7 -2.2 64 4-69 76-139 (177)
43 PRK15370 E3 ubiquitin-protein 97.5 0.00019 4.2E-09 57.9 4.8 74 5-86 199-272 (754)
44 KOG4658 Apoptotic ATPase [Sign 97.2 0.0002 4.3E-09 58.8 1.7 86 5-91 545-633 (889)
45 PF00560 LRR_1: Leucine Rich R 97.1 0.00017 3.6E-09 31.4 0.5 20 6-26 1-20 (22)
46 KOG0531 Protein phosphatase 1, 96.8 0.00038 8.3E-09 52.5 0.3 82 4-88 71-152 (414)
47 KOG2739 Leucine-rich acidic nu 96.7 0.001 2.2E-08 46.8 2.0 39 4-42 64-104 (260)
48 KOG1644 U2-associated snRNP A' 96.5 0.003 6.6E-08 43.2 3.3 82 1-84 60-148 (233)
49 PF00560 LRR_1: Leucine Rich R 96.5 0.00078 1.7E-08 29.2 0.3 18 31-49 2-19 (22)
50 KOG2739 Leucine-rich acidic nu 96.4 0.0025 5.4E-08 44.9 2.5 60 5-66 43-104 (260)
51 KOG3207 Beta-tubulin folding c 96.3 0.0017 3.6E-08 49.0 1.3 62 4-66 245-314 (505)
52 PF13504 LRR_7: Leucine rich r 96.2 0.0032 6.9E-08 25.5 1.2 13 6-18 2-14 (17)
53 KOG0473 Leucine-rich repeat pr 95.5 0.00041 8.9E-09 48.5 -4.6 82 4-87 41-122 (326)
54 KOG3207 Beta-tubulin folding c 95.3 0.0033 7.2E-08 47.5 -0.7 62 3-64 170-233 (505)
55 smart00369 LRR_TYP Leucine-ric 95.1 0.021 4.5E-07 25.5 1.9 14 5-18 2-15 (26)
56 smart00370 LRR Leucine-rich re 95.1 0.021 4.5E-07 25.5 1.9 14 5-18 2-15 (26)
57 KOG2982 Uncharacterized conser 95.1 0.017 3.7E-07 42.0 2.3 64 3-66 95-159 (418)
58 KOG2123 Uncharacterized conser 95.1 0.0035 7.5E-08 45.1 -1.1 65 3-70 39-105 (388)
59 KOG3665 ZYG-1-like serine/thre 93.8 0.058 1.3E-06 43.6 2.9 60 3-64 171-231 (699)
60 KOG2982 Uncharacterized conser 93.7 0.015 3.4E-07 42.2 -0.3 60 5-65 71-133 (418)
61 KOG0473 Leucine-rich repeat pr 93.0 0.0017 3.7E-08 45.5 -5.9 61 4-66 64-124 (326)
62 KOG3665 ZYG-1-like serine/thre 92.2 0.055 1.2E-06 43.8 0.7 81 4-86 147-230 (699)
63 smart00364 LRR_BAC Leucine-ric 91.9 0.12 2.6E-06 23.3 1.3 18 5-23 2-19 (26)
64 smart00365 LRR_SD22 Leucine-ri 91.7 0.16 3.5E-06 22.8 1.7 14 5-18 2-15 (26)
65 KOG1909 Ran GTPase-activating 90.8 0.097 2.1E-06 38.7 0.7 62 5-66 185-254 (382)
66 KOG1909 Ran GTPase-activating 90.5 0.14 3E-06 37.9 1.3 63 4-66 156-226 (382)
67 PRK15386 type III secretion pr 90.4 0.35 7.6E-06 36.8 3.3 53 4-63 51-104 (426)
68 PF13306 LRR_5: Leucine rich r 90.1 0.54 1.2E-05 29.0 3.7 59 2-62 9-67 (129)
69 PF13516 LRR_6: Leucine Rich r 90.0 0.061 1.3E-06 23.4 -0.6 10 7-16 4-13 (24)
70 PF13306 LRR_5: Leucine rich r 89.9 0.46 1E-05 29.3 3.2 60 2-63 32-91 (129)
71 smart00368 LRR_RI Leucine rich 89.9 0.28 6E-06 22.3 1.6 14 5-18 2-15 (28)
72 COG5238 RNA1 Ran GTPase-activa 89.6 0.4 8.6E-06 34.8 2.9 63 3-66 90-170 (388)
73 KOG2123 Uncharacterized conser 88.9 0.026 5.7E-07 40.7 -3.3 56 3-59 61-123 (388)
74 PRK15386 type III secretion pr 84.6 1.5 3.2E-05 33.6 3.6 31 6-39 73-104 (426)
75 KOG2120 SCF ubiquitin ligase, 74.2 1.7 3.7E-05 32.1 1.1 65 6-72 287-355 (419)
76 TIGR00864 PCC polycystin catio 73.2 2.5 5.3E-05 39.4 2.0 34 11-44 1-34 (2740)
77 COG5238 RNA1 Ran GTPase-activa 71.7 4.5 9.8E-05 29.6 2.7 67 4-70 29-109 (388)
78 TIGR00864 PCC polycystin catio 69.0 4.6 9.9E-05 37.8 2.7 34 35-68 1-34 (2740)
79 KOG3763 mRNA export factor TAP 67.9 3.2 7E-05 32.8 1.5 11 53-63 244-254 (585)
80 KOG3763 mRNA export factor TAP 64.0 3.9 8.4E-05 32.4 1.2 63 4-67 217-284 (585)
81 PF01034 Syndecan: Syndecan do 55.1 4 8.6E-05 22.6 0.0 13 122-134 12-24 (64)
82 KOG2120 SCF ubiquitin ligase, 52.7 1.5 3.2E-05 32.4 -2.4 62 5-66 210-273 (419)
83 smart00367 LRR_CC Leucine-rich 52.7 11 0.00024 16.3 1.3 12 5-16 2-13 (26)
84 PF08374 Protocadherin: Protoc 36.7 8.2 0.00018 26.8 -0.7 18 119-136 38-55 (221)
85 PF05808 Podoplanin: Podoplani 36.6 12 0.00025 24.8 0.0 16 121-136 131-146 (162)
86 KOG3864 Uncharacterized conser 33.2 9.3 0.0002 26.5 -0.9 61 2-62 122-185 (221)
87 KOG1947 Leucine rich repeat pr 29.2 42 0.0009 25.4 1.9 10 5-14 214-223 (482)
88 PF11446 DUF2897: Protein of u 27.4 5.3 0.00011 21.4 -2.3 17 119-135 6-22 (55)
89 KOG2087 Glycoprotein hormone r 27.2 33 0.00073 25.8 1.1 44 95-138 5-48 (363)
90 PF02439 Adeno_E3_CR2: Adenovi 24.6 8.7 0.00019 18.9 -1.6 14 122-135 6-19 (38)
91 PF04478 Mid2: Mid2 like cell 24.3 32 0.0007 22.6 0.5 11 118-128 48-58 (154)
92 PTZ00382 Variant-specific surf 20.1 14 0.00031 22.2 -1.7 6 122-127 69-74 (96)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=1.2e-15 Score=119.18 Aligned_cols=98 Identities=35% Similarity=0.564 Sum_probs=85.0
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcc--cCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQ--LQSFS 79 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~--l~~l~ 79 (139)
+.+++|+.|+|++|.+.|.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.++|.+|.... ...+.
T Consensus 439 ~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~ 518 (623)
T PLN03150 439 SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518 (623)
T ss_pred hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999997642 23455
Q ss_pred CcccccCCCCCCCCCCCCCC
Q 046028 80 PTSYEVNKGLYGPPLTNESQ 99 (139)
Q Consensus 80 ~l~~~~n~~~c~~p~~~~~~ 99 (139)
.+.+.+|+.+|+.|....|.
T Consensus 519 ~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 519 SFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred eEEecCCccccCCCCCCCCc
Confidence 67788999999877555564
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.49 E-value=2.9e-14 Score=116.05 Aligned_cols=90 Identities=36% Similarity=0.569 Sum_probs=55.7
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~ 82 (139)
.+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+.+|+.+++++|.+.+.+|....+.++....
T Consensus 521 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~ 600 (968)
T PLN00113 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASA 600 (968)
T ss_pred CccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhh
Confidence 44556666666666666666666666666666666666666666666666666666666666666666555555555555
Q ss_pred cccCCCCCCC
Q 046028 83 YEVNKGLYGP 92 (139)
Q Consensus 83 ~~~n~~~c~~ 92 (139)
+.+|+.+|+.
T Consensus 601 ~~~n~~lc~~ 610 (968)
T PLN00113 601 VAGNIDLCGG 610 (968)
T ss_pred hcCCccccCC
Confidence 6666666653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.31 E-value=1.9e-12 Score=105.54 Aligned_cols=92 Identities=38% Similarity=0.553 Sum_probs=78.4
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
.++++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.+++++|++.+.+|... .+..+..
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred hhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 356778889999999988899889999999999999999999999999999999999999999998888764 6777888
Q ss_pred cccccCCCCCCCC
Q 046028 81 TSYEVNKGLYGPP 93 (139)
Q Consensus 81 l~~~~n~~~c~~p 93 (139)
+.+.+|+..+..|
T Consensus 576 l~ls~N~l~~~~p 588 (968)
T PLN00113 576 VNISHNHLHGSLP 588 (968)
T ss_pred EeccCCcceeeCC
Confidence 8888888776544
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.21 E-value=6.5e-12 Score=69.70 Aligned_cols=61 Identities=46% Similarity=0.586 Sum_probs=54.8
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l 65 (139)
++|++|++++|+++...+..|..+++|++|++++|+++...+..|..+++|+.+++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999955557899999999999999999977778899999999999999975
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.17 E-value=4.4e-11 Score=93.75 Aligned_cols=87 Identities=37% Similarity=0.559 Sum_probs=79.5
Q ss_pred CcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCccccc
Q 046028 7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSYEV 85 (139)
Q Consensus 7 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~~~~ 85 (139)
++.|+|++|.+.|.+|..+..+++|+.|++++|.++|.+|..+..+.+|+.|++++|++.+.+|... .+.+|+.+.+.+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 6789999999999999999999999999999999999999999999999999999999999998764 788899999988
Q ss_pred CCCCCCCC
Q 046028 86 NKGLYGPP 93 (139)
Q Consensus 86 n~~~c~~p 93 (139)
|...+..|
T Consensus 500 N~l~g~iP 507 (623)
T PLN03150 500 NSLSGRVP 507 (623)
T ss_pred CcccccCC
Confidence 87665444
No 6
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.02 E-value=1.2e-10 Score=85.21 Aligned_cols=92 Identities=25% Similarity=0.214 Sum_probs=82.7
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCC
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFS 79 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~ 79 (139)
|.+|++|+.|+|++|+++..-+.+|.+..+++.|.|..|++....-..|.++..|+.|++.+|+++..-|..+ .+.++.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 4678999999999999998989999999999999999999996666789999999999999999998888776 567788
Q ss_pred CcccccCCCCCCC
Q 046028 80 PTSYEVNKGLYGP 92 (139)
Q Consensus 80 ~l~~~~n~~~c~~ 92 (139)
.+.+.+|++.|..
T Consensus 350 ~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 350 TLNLLSNPFNCNC 362 (498)
T ss_pred eeehccCcccCcc
Confidence 8889999999964
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.86 E-value=1.3e-10 Score=76.80 Aligned_cols=85 Identities=27% Similarity=0.371 Sum_probs=52.0
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCC-cchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~ 80 (139)
.++++|+.|+++.|++. .+|..|+.++.|+.||+..|+++. .+|+.|..+..|+.+.++.|.+.-.+|+..++++++.
T Consensus 76 ssl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 76 SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQI 154 (264)
T ss_pred hhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeE
Confidence 34566666677777766 667777777777777776666542 2555565566666666666666655555555555555
Q ss_pred cccccCC
Q 046028 81 TSYEVNK 87 (139)
Q Consensus 81 l~~~~n~ 87 (139)
+.+..|.
T Consensus 155 l~lrdnd 161 (264)
T KOG0617|consen 155 LSLRDND 161 (264)
T ss_pred EeeccCc
Confidence 5555443
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=3.1e-09 Score=70.81 Aligned_cols=83 Identities=31% Similarity=0.346 Sum_probs=37.3
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHh-hcCCCCCeEEccCCcccccCC--CCcccCCCC
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSYNNLVGKIP--TSTQLQSFS 79 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l~l~~N~l~~~~p--~~~~l~~l~ 79 (139)
.+.+|+.||+++|.++ .+. .+..++.|+.|++++|+++ .+...+ ..+++|+.|++++|++...-. ....+++|+
T Consensus 40 ~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred hhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence 4678999999999998 453 5788999999999999999 454444 468999999999999974322 223577788
Q ss_pred CcccccCCC
Q 046028 80 PTSYEVNKG 88 (139)
Q Consensus 80 ~l~~~~n~~ 88 (139)
.+++.+||.
T Consensus 117 ~L~L~~NPv 125 (175)
T PF14580_consen 117 VLSLEGNPV 125 (175)
T ss_dssp EEE-TT-GG
T ss_pred eeeccCCcc
Confidence 888888875
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.75 E-value=9.4e-10 Score=84.21 Aligned_cols=83 Identities=29% Similarity=0.306 Sum_probs=52.1
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc----ccCCCCC
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST----QLQSFSP 80 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~----~l~~l~~ 80 (139)
++|++|+||+|+++...+..|..+..|+.|+|++|+++......|..+.+|+.||+++|.++..+.+.. .+++++.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 456666666666664444556666666666666666664444556667777777777777776665432 4666666
Q ss_pred cccccCC
Q 046028 81 TSYEVNK 87 (139)
Q Consensus 81 l~~~~n~ 87 (139)
+.+.||+
T Consensus 397 L~l~gNq 403 (873)
T KOG4194|consen 397 LRLTGNQ 403 (873)
T ss_pred eeecCce
Confidence 6666664
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.74 E-value=1.4e-09 Score=71.99 Aligned_cols=79 Identities=28% Similarity=0.413 Sum_probs=48.3
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~ 82 (139)
.+.+++.|-||+|+++ ..|+.+..+.+|+.|++.+|++. .+|.+++.++.|+.+++.-|++.-.+.....++.+..++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 3445566667777776 66666667777777777777776 666667777777777777666663332222444444433
Q ss_pred c
Q 046028 83 Y 83 (139)
Q Consensus 83 ~ 83 (139)
+
T Consensus 109 l 109 (264)
T KOG0617|consen 109 L 109 (264)
T ss_pred c
Confidence 3
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.70 E-value=2.3e-09 Score=78.97 Aligned_cols=84 Identities=23% Similarity=0.268 Sum_probs=68.6
Q ss_pred CCCCCCcEEeccCCcCCCCCcccc-CCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSF-GNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~ 80 (139)
..+..|.+++++.|.+. .+|.+. +++.++..||+.+|++. +.|++++-+.+|..+|+++|.+++.++....+ .++.
T Consensus 225 ~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~ 301 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKF 301 (565)
T ss_pred CccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeee
Confidence 34455666677777777 666554 47888999999999999 89999999999999999999999888877777 8888
Q ss_pred cccccCCC
Q 046028 81 TSYEVNKG 88 (139)
Q Consensus 81 l~~~~n~~ 88 (139)
+.+.|||.
T Consensus 302 L~leGNPl 309 (565)
T KOG0472|consen 302 LALEGNPL 309 (565)
T ss_pred hhhcCCch
Confidence 88899975
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.67 E-value=4.5e-09 Score=80.58 Aligned_cols=70 Identities=26% Similarity=0.181 Sum_probs=47.0
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS 72 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~ 72 (139)
.+.+++.|+|++|+++..--.++.+++.|+.|+++.|.++...++.+...++|+.|++++|++....+..
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s 336 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS 336 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhH
Confidence 4556667777777776555556667777777777777777666666777777777777777776555543
No 13
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.66 E-value=1.1e-08 Score=56.57 Aligned_cols=59 Identities=32% Similarity=0.388 Sum_probs=51.1
Q ss_pred cccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcccccCC
Q 046028 29 KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSYEVNK 87 (139)
Q Consensus 29 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~~~~n~ 87 (139)
++|+.|++++|+++...+..|..+++|+.+++++|.++...+..+ .+.+++.+.+.+|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 478999999999996655788999999999999999998887664 78888989888875
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.63 E-value=6.3e-09 Score=80.71 Aligned_cols=86 Identities=30% Similarity=0.311 Sum_probs=61.4
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchH-HhhcCCCCCeEEccCCcccccCCCCcccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA-QLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~ 80 (139)
..+..|+.||||+|++. ..|..+-.-+++-.|+|++|++. .+|. -+.++..|-+||+|+|++...+|...++..+..
T Consensus 100 F~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred cccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 35666777777777777 77777766677777777777777 5554 356677777888888888877777666777777
Q ss_pred cccccCCCC
Q 046028 81 TSYEVNKGL 89 (139)
Q Consensus 81 l~~~~n~~~ 89 (139)
+.+.+||..
T Consensus 178 L~Ls~NPL~ 186 (1255)
T KOG0444|consen 178 LKLSNNPLN 186 (1255)
T ss_pred hhcCCChhh
Confidence 777777653
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.59 E-value=1e-08 Score=75.66 Aligned_cols=86 Identities=24% Similarity=0.370 Sum_probs=65.7
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcch------------------------HHhhcCCCCCe
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKIS------------------------AQLASLNFLSV 57 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p------------------------~~~~~l~~L~~ 57 (139)
..+++|..|+|++|.+. .+|..++.+..|+.++++.|++. .+| +.+..+.+|.+
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 34677788888888887 78888888877888888887765 333 33566778888
Q ss_pred EEccCCcccccCCCCcccCCCCCcccccCCCC
Q 046028 58 LNLSYNNLVGKIPTSTQLQSFSPTSYEVNKGL 89 (139)
Q Consensus 58 l~l~~N~l~~~~p~~~~l~~l~~l~~~~n~~~ 89 (139)
+|+.+|.+...+|....+.+++++.+.||+.-
T Consensus 510 LDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCCchhhCChhhccccceeEEEecCCccC
Confidence 88888888877777778888888888888754
No 16
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.53 E-value=9.8e-08 Score=49.29 Aligned_cols=36 Identities=42% Similarity=0.701 Sum_probs=21.8
Q ss_pred CCcEEeccCCcCCCCCccccCCCcccCeeccccccCC
Q 046028 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLS 42 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~ 42 (139)
+|++|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 55555666666666666666665
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.52 E-value=1.3e-08 Score=81.23 Aligned_cols=85 Identities=36% Similarity=0.466 Sum_probs=57.0
Q ss_pred CCCCCcEEeccCCcCCCCCccc-cCCCcccCeeccccccCCCcchHH----------------------hhcCCCCCeEE
Q 046028 3 RFVSLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKISAQ----------------------LASLNFLSVLN 59 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~l~~n~l~~~~p~~----------------------~~~l~~L~~l~ 59 (139)
++.+|+.|+|++|++. .+|.. +.++..|+.|++++|+++ .+|.. +..++.|+.+|
T Consensus 381 ~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lD 458 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLD 458 (1081)
T ss_pred cccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEEe
Confidence 4567778888888777 56643 667777777777777766 44443 45566677788
Q ss_pred ccCCcccccC-CCCcccCCCCCcccccCCCC
Q 046028 60 LSYNNLVGKI-PTSTQLQSFSPTSYEVNKGL 89 (139)
Q Consensus 60 l~~N~l~~~~-p~~~~l~~l~~l~~~~n~~~ 89 (139)
++.|+++... |.....++|+.+++.||.++
T Consensus 459 lS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 459 LSCNNLSEVTLPEALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred cccchhhhhhhhhhCCCcccceeeccCCccc
Confidence 8888776333 33323367888888888753
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.39 E-value=4e-08 Score=78.52 Aligned_cols=88 Identities=34% Similarity=0.327 Sum_probs=69.2
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchH-HhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA-QLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~ 82 (139)
+..|+.|.+.+|.++...-+.+...++|+.|+|++|++. .+|. .+.++..|+.|++|+|.++..+.....+..+..+.
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLR 436 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHh
Confidence 345788999999999877788889999999999999999 6664 57889999999999999995443333555666666
Q ss_pred cccCCCCCCC
Q 046028 83 YEVNKGLYGP 92 (139)
Q Consensus 83 ~~~n~~~c~~ 92 (139)
..+|...|-+
T Consensus 437 ahsN~l~~fP 446 (1081)
T KOG0618|consen 437 AHSNQLLSFP 446 (1081)
T ss_pred hcCCceeech
Confidence 6677666643
No 19
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.38 E-value=4.3e-07 Score=46.86 Aligned_cols=39 Identities=38% Similarity=0.568 Sum_probs=33.2
Q ss_pred cccCeeccccccCCCcchHHhhcCCCCCeEEccCCccccc
Q 046028 29 KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK 68 (139)
Q Consensus 29 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 68 (139)
++|+.|++++|+++ .+|..+..+++|+.+++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCC
Confidence 47899999999999 6787899999999999999999843
No 20
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=3.1e-08 Score=63.30 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=69.5
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCC-cccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNL-KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l 81 (139)
+..+|+.++|++|.+. ..|+.|... +.++.+++++|+++ .+|.++..++.|+.++++.|.+...+....++.++..+
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 3456788899999999 888887654 58999999999999 89999999999999999999999776666677777777
Q ss_pred ccccCCC
Q 046028 82 SYEVNKG 88 (139)
Q Consensus 82 ~~~~n~~ 88 (139)
+..+|..
T Consensus 129 ds~~na~ 135 (177)
T KOG4579|consen 129 DSPENAR 135 (177)
T ss_pred cCCCCcc
Confidence 7666643
No 21
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=6e-08 Score=69.47 Aligned_cols=63 Identities=33% Similarity=0.372 Sum_probs=50.3
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI 69 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 69 (139)
.+.|+++|||+|.|+ .+..+.+-++.++.|++++|.+. .+. .+..+.+|+.+|+++|.++...
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~ 345 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECV 345 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhh
Confidence 456888899999888 77778888888899999999887 443 3778888889999988887443
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.24 E-value=2.4e-07 Score=61.80 Aligned_cols=82 Identities=32% Similarity=0.400 Sum_probs=26.1
Q ss_pred CCCCCcEEeccCCcCCCCCccccC-CCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFG-NLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
+..++++|+|++|.|+ .+. .+. .+.+|+.|++++|.++ .+. .+..+..|+.|++++|+++...+... .++++..
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 3456889999999998 543 455 5789999999999999 444 47788999999999999995433221 4677888
Q ss_pred cccccCCC
Q 046028 81 TSYEVNKG 88 (139)
Q Consensus 81 l~~~~n~~ 88 (139)
+.+.+|..
T Consensus 93 L~L~~N~I 100 (175)
T PF14580_consen 93 LYLSNNKI 100 (175)
T ss_dssp EE-TTS--
T ss_pred EECcCCcC
Confidence 88877754
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.20 E-value=5.3e-08 Score=71.62 Aligned_cols=63 Identities=25% Similarity=0.323 Sum_probs=26.9
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeec-cccccCCCcchHHhhcCCCCCeEEccCCcc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLD-LSTNNLSGKISAQLASLNFLSVLNLSYNNL 65 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~-l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l 65 (139)
.+.+|++||||+|.|+-.-|..|.+++++..|- +++|+|+....+.|..+.+++.+.+.-|++
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i 152 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI 152 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh
Confidence 344445555555555444444444444443332 222444432223344444444444333333
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.09 E-value=1.4e-06 Score=71.02 Aligned_cols=83 Identities=33% Similarity=0.413 Sum_probs=69.0
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..++.|+.|||++|.--+.+|..++.+-+|++|++++..++ .+|..+.++..|.+|++.++.-...++... .+.+|+.
T Consensus 568 ~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 45889999999998877799999999999999999999999 899999999999999999887655555444 3677776
Q ss_pred ccccc
Q 046028 81 TSYEV 85 (139)
Q Consensus 81 l~~~~ 85 (139)
+.+..
T Consensus 647 L~l~~ 651 (889)
T KOG4658|consen 647 LRLPR 651 (889)
T ss_pred EEeec
Confidence 66543
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.08 E-value=1.4e-05 Score=67.16 Aligned_cols=84 Identities=20% Similarity=0.244 Sum_probs=53.5
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~ 82 (139)
.+++|+.|+|+++.....+|. +..+++|+.|++++|.....+|..+..+.+|+.+++++|...+.+|....+.++..+.
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~ 710 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN 710 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEe
Confidence 456666777766543335553 5666777777777665555677777777778888887764444556555566666666
Q ss_pred cccCC
Q 046028 83 YEVNK 87 (139)
Q Consensus 83 ~~~n~ 87 (139)
+.++.
T Consensus 711 Lsgc~ 715 (1153)
T PLN03210 711 LSGCS 715 (1153)
T ss_pred CCCCC
Confidence 66554
No 26
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.07 E-value=4.9e-07 Score=70.53 Aligned_cols=91 Identities=27% Similarity=0.399 Sum_probs=62.9
Q ss_pred CCCCCcEEeccCCcCC-CCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 3 RFVSLYALNLSHNALT-GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
+|++|+.|.+.+|+++ -.+|..++.+.+|+.+..++|.+. ..|..++.+..|+.|.++.|++. ..|... -+..+..
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~v 366 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKV 366 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcce
Confidence 3455555555555543 245666666666666666666666 67778888888888888888888 455554 4567788
Q ss_pred cccccCCCCCCCCCC
Q 046028 81 TSYEVNKGLYGPPLT 95 (139)
Q Consensus 81 l~~~~n~~~c~~p~~ 95 (139)
+++..|+.+--+|.+
T Consensus 367 LDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 367 LDLRENPNLVMPPKP 381 (1255)
T ss_pred eeccCCcCccCCCCc
Confidence 999999988766544
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.00 E-value=1.7e-06 Score=62.21 Aligned_cols=60 Identities=27% Similarity=0.332 Sum_probs=42.3
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
.++++.|++|+|++. .. +.+..+.+|+.||+++|.++ .+.++-..+.+.+++.++.|.+.
T Consensus 306 ~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE 365 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE 365 (490)
T ss_pred ccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh
Confidence 577889999999987 33 33788899999999999887 45554444555555555555444
No 28
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.99 E-value=3.1e-07 Score=72.36 Aligned_cols=85 Identities=33% Similarity=0.338 Sum_probs=49.6
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchH----------------------HhhcCCCCCeEEccC
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA----------------------QLASLNFLSVLNLSY 62 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~----------------------~~~~l~~L~~l~l~~ 62 (139)
+.++.|||++|+++.. +.+..+++|++||++.|+++ .+|. .+.++.+|+.||+++
T Consensus 187 ~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSY 263 (1096)
T ss_pred HHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhH
Confidence 4455556666655522 14555555556666655554 3332 245566777778888
Q ss_pred CcccccC--CCCcccCCCCCcccccCCCCCCC
Q 046028 63 NNLVGKI--PTSTQLQSFSPTSYEVNKGLYGP 92 (139)
Q Consensus 63 N~l~~~~--p~~~~l~~l~~l~~~~n~~~c~~ 92 (139)
|-+.+-- ...+.+..|+.+.+.|||..|.+
T Consensus 264 Nll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 264 NLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 7776321 12224556677889999988853
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.99 E-value=8e-07 Score=68.23 Aligned_cols=81 Identities=25% Similarity=0.310 Sum_probs=43.9
Q ss_pred CcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccccC
Q 046028 7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVN 86 (139)
Q Consensus 7 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~~n 86 (139)
|..||.+.|.+. .+|..++.+.+|+.|++..|++. .+|.++.. -.|..||++.|++...+-....++.|+.+.++.|
T Consensus 168 l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 168 LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccC
Confidence 334444444444 44444444444444444444444 34444442 2355777888887754444457777777878777
Q ss_pred CCCC
Q 046028 87 KGLY 90 (139)
Q Consensus 87 ~~~c 90 (139)
|..-
T Consensus 245 PLqS 248 (722)
T KOG0532|consen 245 PLQS 248 (722)
T ss_pred CCCC
Confidence 7543
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.85 E-value=1.3e-05 Score=64.45 Aligned_cols=75 Identities=27% Similarity=0.199 Sum_probs=37.6
Q ss_pred CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccccc
Q 046028 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEV 85 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~~ 85 (139)
+|+.|++++|.++ .+|... .+|+.|++++|+++ .+|... .+|+.+++++|+++..+.....+..+..+.+.+
T Consensus 383 ~L~~LdLs~N~Lt-~LP~l~---s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 383 GLKELIVSGNRLT-SLPVLP---SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 454 (788)
T ss_pred ccceEEecCCccc-CCCCcc---cCCCEEEccCCcCC-CCCcch---hhhhhhhhccCcccccChHHhhccCCCeEECCC
Confidence 4566666666666 344322 34555666666665 344322 234555555565553222222444555555555
Q ss_pred CCC
Q 046028 86 NKG 88 (139)
Q Consensus 86 n~~ 88 (139)
|+.
T Consensus 455 N~L 457 (788)
T PRK15387 455 NPL 457 (788)
T ss_pred CCC
Confidence 543
No 31
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.82 E-value=2.8e-05 Score=52.81 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=62.4
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc--ccCCCCcccCCCCCcc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV--GKIPTSTQLQSFSPTS 82 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~--~~~p~~~~l~~l~~l~ 82 (139)
.+...+||+.|.+. .+ +.|..++.|.+|.+++|+++...|.--..+++|+.|.+.+|.+. +.+.....++.|+.+.
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 45667899999886 33 45788899999999999999766665555678999999999886 3333444667788888
Q ss_pred cccCCC
Q 046028 83 YEVNKG 88 (139)
Q Consensus 83 ~~~n~~ 88 (139)
+.+|+.
T Consensus 120 ll~Npv 125 (233)
T KOG1644|consen 120 LLGNPV 125 (233)
T ss_pred ecCCch
Confidence 888864
No 32
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.76 E-value=2e-05 Score=63.51 Aligned_cols=59 Identities=31% Similarity=0.338 Sum_probs=28.2
Q ss_pred CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC
Q 046028 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI 69 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 69 (139)
+|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..+..+.+|+.+++++|.+++..
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred CCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 3445555555554 334321 23444555555554 44555555555555555555555443
No 33
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.75 E-value=6.8e-05 Score=63.14 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=59.8
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTS 82 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~ 82 (139)
+.+|+.|++++|++. .++..+..+++|+.++++++.....+|. +..+++|+.|++++|.....+|... .+.+++.+.
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 456778888888877 6777777888888888887654446664 6777888888888775544555543 667777777
Q ss_pred cccCCCCC
Q 046028 83 YEVNKGLY 90 (139)
Q Consensus 83 ~~~n~~~c 90 (139)
+.++..+-
T Consensus 688 L~~c~~L~ 695 (1153)
T PLN03210 688 MSRCENLE 695 (1153)
T ss_pred CCCCCCcC
Confidence 76654443
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.73 E-value=1.9e-05 Score=58.87 Aligned_cols=79 Identities=34% Similarity=0.467 Sum_probs=54.5
Q ss_pred CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccccc
Q 046028 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEV 85 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~~ 85 (139)
+|+.|+++.|.+. .+|..+..++.|+.|++++|+++ .+|........|+.+++++|++...++.......+..+.+.+
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence 6777888888877 66666777888888888888887 666655567777888888888875444322333455565655
Q ss_pred C
Q 046028 86 N 86 (139)
Q Consensus 86 n 86 (139)
|
T Consensus 219 N 219 (394)
T COG4886 219 N 219 (394)
T ss_pred C
Confidence 5
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.71 E-value=7.5e-05 Score=60.20 Aligned_cols=54 Identities=30% Similarity=0.492 Sum_probs=24.1
Q ss_pred CcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028 7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 7 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
|+.|++++|.++ .+|..+. .+|+.|++++|++. .+|..+. .+|+.|++++|.+.
T Consensus 222 L~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 222 IKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS 275 (754)
T ss_pred CCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC
Confidence 444444444444 3333221 23444444444444 3443332 24555566655555
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.68 E-value=1.5e-05 Score=59.42 Aligned_cols=83 Identities=30% Similarity=0.484 Sum_probs=42.6
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~ 82 (139)
.++.|+.|++++|++. .+|.....++.|+.|++++|+++ .+|........|+.+.+++|.+...+.....+..+..+.
T Consensus 161 ~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 161 NLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE 238 (394)
T ss_pred ccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc
Confidence 4555666666666665 55554445556666666666666 455544444455666666664333333333333333333
Q ss_pred cccCC
Q 046028 83 YEVNK 87 (139)
Q Consensus 83 ~~~n~ 87 (139)
...|+
T Consensus 239 l~~n~ 243 (394)
T COG4886 239 LSNNK 243 (394)
T ss_pred cCCce
Confidence 33443
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.65 E-value=3.2e-06 Score=66.81 Aligned_cols=60 Identities=35% Similarity=0.398 Sum_probs=52.1
Q ss_pred CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccccc
Q 046028 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK 68 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 68 (139)
+|.+.+.++|++. ....++.-++.+++|||++|+++. . +.+..+..|++||+++|++.-.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~~v 224 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLRHV 224 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhccc
Confidence 4667889999998 777888899999999999999983 3 3889999999999999999843
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.63 E-value=1e-05 Score=58.20 Aligned_cols=38 Identities=32% Similarity=0.378 Sum_probs=16.1
Q ss_pred cccCeeccccccCCCc----chHHhhcCCCCCeEEccCCccc
Q 046028 29 KHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 29 ~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
++|+.|++++|.+++. +...+..+.+|+.+++++|.+.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 4444444444444421 1122333344555555555444
No 39
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.59 E-value=8.5e-06 Score=62.77 Aligned_cols=79 Identities=30% Similarity=0.357 Sum_probs=58.2
Q ss_pred CcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccccC
Q 046028 7 LYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYEVN 86 (139)
Q Consensus 7 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~~n 86 (139)
|+.|-+++|+++ .+|..++.+..|..||.+.|++. .+|..++++.+|+.+.+..|++...++... -..|..++|..|
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScN 221 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCN 221 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccC
Confidence 667777788877 77777777777888888888887 777778888888888888888875555444 345666777766
Q ss_pred CC
Q 046028 87 KG 88 (139)
Q Consensus 87 ~~ 88 (139)
+.
T Consensus 222 ki 223 (722)
T KOG0532|consen 222 KI 223 (722)
T ss_pred ce
Confidence 54
No 40
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.59 E-value=1.9e-05 Score=56.90 Aligned_cols=83 Identities=23% Similarity=0.327 Sum_probs=49.4
Q ss_pred CCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCcccccCCC-----
Q 046028 5 VSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLVGKIPT----- 71 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~~~~p~----- 71 (139)
++|+.|++++|.+++. ++..+..+.+|+.|++++|.+++. ++..+...++|+.+++++|.+.+....
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 5677788888777742 223455566777788877777632 233344556777777777776522211
Q ss_pred CcccCCCCCcccccCC
Q 046028 72 STQLQSFSPTSYEVNK 87 (139)
Q Consensus 72 ~~~l~~l~~l~~~~n~ 87 (139)
....++++.+.+.+|.
T Consensus 217 ~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 217 LASLKSLEVLNLGDNN 232 (319)
T ss_pred hcccCCCCEEecCCCc
Confidence 1134556666666654
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.53 E-value=5.7e-05 Score=56.91 Aligned_cols=61 Identities=34% Similarity=0.433 Sum_probs=34.5
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
.+++|+.|++..|.+. .+...+..+.+|++|++++|.++... .+..+..|+.|++++|.++
T Consensus 93 ~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred cccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhheeccCcch
Confidence 3555666666666666 33333555666666666666666332 2344445666666666665
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.51 E-value=7.1e-06 Score=52.66 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=56.5
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI 69 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 69 (139)
++.++.+++++|.++ .+|.++..++.|+.++++.|.+. ..|..+..+.++..|+..+|.+....
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCc
Confidence 346788999999999 99999999999999999999999 78888888999999999998887433
No 43
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.47 E-value=0.00019 Score=57.87 Aligned_cols=74 Identities=24% Similarity=0.378 Sum_probs=49.8
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE 84 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~ 84 (139)
++++.|++++|.++ .+|..+. .+|+.|++++|+++ .+|..+. .+|+.+++++|.+.. +|... ...+..+.+.
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~-LP~~l-~s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE-LPERL-PSALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc-CChhH-hCCCCEEECc
Confidence 35778888888888 6676544 47888888888888 5676543 478889999998884 34322 1234444444
Q ss_pred cC
Q 046028 85 VN 86 (139)
Q Consensus 85 ~n 86 (139)
+|
T Consensus 271 ~N 272 (754)
T PRK15370 271 HN 272 (754)
T ss_pred CC
Confidence 44
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.15 E-value=0.0002 Score=58.76 Aligned_cols=86 Identities=27% Similarity=0.273 Sum_probs=68.6
Q ss_pred CCCcEEeccCCc--CCCCCcc-ccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028 5 VSLYALNLSHNA--LTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (139)
Q Consensus 5 ~~L~~L~Ls~N~--l~g~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l 81 (139)
++|++|-+..|. +. .++. .|..++.|+.||+++|.--+.+|..++++.+|++|++++..++..|.....++.|..+
T Consensus 545 ~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence 468888888886 55 4554 4788999999999988776799999999999999999999999665555577888888
Q ss_pred ccccCCCCCC
Q 046028 82 SYEVNKGLYG 91 (139)
Q Consensus 82 ~~~~n~~~c~ 91 (139)
++..+..+..
T Consensus 624 nl~~~~~l~~ 633 (889)
T KOG4658|consen 624 NLEVTGRLES 633 (889)
T ss_pred cccccccccc
Confidence 8776655443
No 45
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.09 E-value=0.00017 Score=31.35 Aligned_cols=20 Identities=65% Similarity=0.776 Sum_probs=11.8
Q ss_pred CCcEEeccCCcCCCCCccccC
Q 046028 6 SLYALNLSHNALTGSIPSSFG 26 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~~p~~~~ 26 (139)
+|+.||+++|+++ .+|..|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3566666666666 5555544
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.76 E-value=0.00038 Score=52.49 Aligned_cols=82 Identities=33% Similarity=0.394 Sum_probs=61.3
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (139)
+..+..+++..|.+. .+-..+..+.+|+.+++.+|++. .+...+..+.+|+++++++|.++...+ ...+..+..+.+
T Consensus 71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred hHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc-hhhccchhhhee
Confidence 455666778888887 44455788899999999999998 444437788999999999999995443 334455777777
Q ss_pred ccCCC
Q 046028 84 EVNKG 88 (139)
Q Consensus 84 ~~n~~ 88 (139)
.+|..
T Consensus 148 ~~N~i 152 (414)
T KOG0531|consen 148 SGNLI 152 (414)
T ss_pred ccCcc
Confidence 77753
No 47
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.001 Score=46.76 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=19.1
Q ss_pred CCCCcEEeccCC--cCCCCCccccCCCcccCeeccccccCC
Q 046028 4 FVSLYALNLSHN--ALTGSIPSSFGNLKHIESLDLSTNNLS 42 (139)
Q Consensus 4 l~~L~~L~Ls~N--~l~g~~p~~~~~l~~L~~L~l~~n~l~ 42 (139)
|++|+.|.+|.| ++.+.++.-...+++|++++++.|+++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 444555555555 444444443344455555555555544
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.53 E-value=0.003 Score=43.16 Aligned_cols=82 Identities=24% Similarity=0.257 Sum_probs=58.6
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcch--HHhhcCCCCCeEEccCCcccccCCCC-----c
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKIS--AQLASLNFLSVLNLSYNNLVGKIPTS-----T 73 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~l~l~~N~l~~~~p~~-----~ 73 (139)
|..++.|.+|.+++|+|+..-|.--..++.|..|.+.+|++. .+- ..+..++.|+.+.+-+|..+.. +.. .
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~k-~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEHK-KNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhcc-cCceeEEEE
Confidence 345788999999999999666655556788999999999987 332 2356788999999999888732 222 1
Q ss_pred ccCCCCCcccc
Q 046028 74 QLQSFSPTSYE 84 (139)
Q Consensus 74 ~l~~l~~l~~~ 84 (139)
.+++++.++|.
T Consensus 138 klp~l~~LDF~ 148 (233)
T KOG1644|consen 138 KLPSLRTLDFQ 148 (233)
T ss_pred ecCcceEeehh
Confidence 34555555553
No 49
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.52 E-value=0.00078 Score=29.18 Aligned_cols=18 Identities=50% Similarity=0.726 Sum_probs=10.2
Q ss_pred cCeeccccccCCCcchHHh
Q 046028 31 IESLDLSTNNLSGKISAQL 49 (139)
Q Consensus 31 L~~L~l~~n~l~~~~p~~~ 49 (139)
|++||+++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 556666666666 555444
No 50
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.0025 Score=44.87 Aligned_cols=60 Identities=33% Similarity=0.448 Sum_probs=44.7
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccc--cCCCcchHHhhcCCCCCeEEccCCccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTN--NLSGKISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n--~l~~~~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
..|+.+.+.+..++ .+ ..|..|++|+.|.++.| +.++.++.-...+++|++++++.|++.
T Consensus 43 ~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 43 VELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34555555555555 22 35778899999999999 666666666666799999999999987
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0017 Score=49.01 Aligned_cols=62 Identities=27% Similarity=0.370 Sum_probs=40.5
Q ss_pred CCCCcEEeccCCcCCCCCc--cccCCCcccCeeccccccCCCc-chHH-----hhcCCCCCeEEccCCccc
Q 046028 4 FVSLYALNLSHNALTGSIP--SSFGNLKHIESLDLSTNNLSGK-ISAQ-----LASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p--~~~~~l~~L~~L~l~~n~l~~~-~p~~-----~~~l~~L~~l~l~~N~l~ 66 (139)
++.|++|||++|.+- ..+ ...+.++.|+.|+++.+.+... .|+. ...+++|++|+++.|++.
T Consensus 245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 355777888877765 444 3456677777777777776532 2222 344677888888888885
No 52
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=96.18 E-value=0.0032 Score=25.46 Aligned_cols=13 Identities=54% Similarity=0.692 Sum_probs=6.1
Q ss_pred CCcEEeccCCcCC
Q 046028 6 SLYALNLSHNALT 18 (139)
Q Consensus 6 ~L~~L~Ls~N~l~ 18 (139)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666655
No 53
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.50 E-value=0.00041 Score=48.47 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=52.9
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (139)
....+.||++.|++. .+-..|..++.+..|+++.|.+. ..|..+.+...++.+++..|..+..+-...+.+.++.+..
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 344566777777776 55556666777777777777777 6677777766777777777777654444445555555554
Q ss_pred ccCC
Q 046028 84 EVNK 87 (139)
Q Consensus 84 ~~n~ 87 (139)
-+|+
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 4443
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.0033 Score=47.46 Aligned_cols=62 Identities=37% Similarity=0.331 Sum_probs=37.0
Q ss_pred CCCCCcEEeccCCcCCCCCccc-cCCCcccCeeccccccCCCcchH-HhhcCCCCCeEEccCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSS-FGNLKHIESLDLSTNNLSGKISA-QLASLNFLSVLNLSYNN 64 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~l~l~~N~ 64 (139)
.|++|+.|+++.|++.-..... -..+++|+.|.++.+.++...-. -...+++|..+++.+|.
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 5788888888888876332222 12456677777777776633222 23345666666666663
No 55
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.15 E-value=0.021 Score=25.48 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=7.9
Q ss_pred CCCcEEeccCCcCC
Q 046028 5 VSLYALNLSHNALT 18 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~ 18 (139)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 56
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.15 E-value=0.021 Score=25.48 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=7.9
Q ss_pred CCCcEEeccCCcCC
Q 046028 5 VSLYALNLSHNALT 18 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~ 18 (139)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555555
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.017 Score=42.02 Aligned_cols=64 Identities=33% Similarity=0.330 Sum_probs=31.2
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCc-chHHhhcCCCCCeEEccCCccc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGK-ISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
+|+.|++|+++.|.+...+-..-..+.+|+.|-+++..+... ....+..++.++.++++.|.+.
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 355566666666665532221112344555555555444322 1223444555666666666443
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.09 E-value=0.0035 Score=45.06 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=51.8
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchH--HhhcCCCCCeEEccCCcccccCC
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISA--QLASLNFLSVLNLSYNNLVGKIP 70 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~--~~~~l~~L~~l~l~~N~l~~~~p 70 (139)
+++.|+.|-||-|+|+..- .+..++.|+.|+|..|.|. .+.. .+.++++|+.|++..|...|.-+
T Consensus 39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 5788999999999998443 3678899999999999998 3332 46788999999999998876544
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.79 E-value=0.058 Score=43.62 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=29.8
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCC-cchHHhhcCCCCCeEEccCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLSYNN 64 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~l~l~~N~ 64 (139)
++++|..||+|+-.++ .+ ..++.+++|+.|-+.+=.+.. ..-..+.++++|+.||+|...
T Consensus 171 sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred ccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 3455555555555554 22 344555555555444444431 111235556666666666543
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.015 Score=42.23 Aligned_cols=60 Identities=28% Similarity=0.364 Sum_probs=37.7
Q ss_pred CCCcEEeccCCcCCCCCc---cccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcc
Q 046028 5 VSLYALNLSHNALTGSIP---SSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNL 65 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p---~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l 65 (139)
+.++++||.+|.++ ... ..+.+|+.|+.|+++.|+++..+...-....+|+.+-+.+..+
T Consensus 71 ~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L 133 (418)
T KOG2982|consen 71 TDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGL 133 (418)
T ss_pred hhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCC
Confidence 45677888888876 322 3345778888888888887744433223455666766665544
No 61
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.00 E-value=0.0017 Score=45.47 Aligned_cols=61 Identities=15% Similarity=0.118 Sum_probs=52.7
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
++.+..+|++.|.+. .+|..++++..+..+++-.|..+ ..|.++...++++.+++..|.+.
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 345667899999998 89999999999999999999988 88989999999999888888765
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.25 E-value=0.055 Score=43.78 Aligned_cols=81 Identities=19% Similarity=0.275 Sum_probs=41.6
Q ss_pred CCCCcEEeccCCcCCC-CCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccc--cCCCCcccCCCCC
Q 046028 4 FVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG--KIPTSTQLQSFSP 80 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~--~~p~~~~l~~l~~ 80 (139)
|++|+.|.+++-.+.. .+-....++++|..||+++..++- + ..++.+.+|+.|.+.+=.+.. .+-..+.++.|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4566666666554431 122334455666666666666652 2 445566666665554433331 1112345666666
Q ss_pred cccccC
Q 046028 81 TSYEVN 86 (139)
Q Consensus 81 l~~~~n 86 (139)
+++...
T Consensus 225 LDIS~~ 230 (699)
T KOG3665|consen 225 LDISRD 230 (699)
T ss_pred eecccc
Confidence 666443
No 63
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=91.88 E-value=0.12 Score=23.28 Aligned_cols=18 Identities=56% Similarity=0.708 Sum_probs=11.3
Q ss_pred CCCcEEeccCCcCCCCCcc
Q 046028 5 VSLYALNLSHNALTGSIPS 23 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~ 23 (139)
++|+.|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35666777777766 5553
No 64
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=91.75 E-value=0.16 Score=22.84 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=8.9
Q ss_pred CCCcEEeccCCcCC
Q 046028 5 VSLYALNLSHNALT 18 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~ 18 (139)
.+|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 65
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=90.84 E-value=0.097 Score=38.70 Aligned_cols=62 Identities=29% Similarity=0.397 Sum_probs=28.7
Q ss_pred CCCcEEeccCCcCC--CC--CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCccc
Q 046028 5 VSLYALNLSHNALT--GS--IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~--g~--~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
+.|+.+.++.|.+. |. +-..+..+++|+.||+.+|.++.. +-..+..+++|+.++++++.++
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 34555555555543 11 112344555555555555555422 1122344455555555554443
No 66
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=90.53 E-value=0.14 Score=37.91 Aligned_cols=63 Identities=22% Similarity=0.315 Sum_probs=33.4
Q ss_pred CCCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCccc
Q 046028 4 FVSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
-++|++++.+.|++... +...|+..+.|+.+.+..|.+... +-..+..+++|+.||+..|-|+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 34566666666666411 112344455666666666655411 1123455666666666666655
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=90.36 E-value=0.35 Score=36.84 Aligned_cols=53 Identities=15% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeecccc-ccCCCcchHHhhcCCCCCeEEccCC
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLST-NNLSGKISAQLASLNFLSVLNLSYN 63 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~l~l~~N 63 (139)
+.+++.|++++|.++ .+|. -..+|+.|.+++ +.+. .+|+.+. .+|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence 467788888888777 5562 223567777665 3333 4454331 35555555554
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.14 E-value=0.54 Score=28.99 Aligned_cols=59 Identities=12% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~ 62 (139)
.+.++|+.+.+.. .+...-...|..+++|+.+.+..+ +...-...+..+.+++.+.+..
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc
Confidence 3455777777764 455344455777778888888775 5534445567776788887764
No 69
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.99 E-value=0.061 Score=23.42 Aligned_cols=10 Identities=50% Similarity=0.637 Sum_probs=3.1
Q ss_pred CcEEeccCCc
Q 046028 7 LYALNLSHNA 16 (139)
Q Consensus 7 L~~L~Ls~N~ 16 (139)
|+.|++++|.
T Consensus 4 L~~L~l~~n~ 13 (24)
T PF13516_consen 4 LETLDLSNNQ 13 (24)
T ss_dssp -SEEE-TSSB
T ss_pred CCEEEccCCc
Confidence 3333443333
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.90 E-value=0.46 Score=29.31 Aligned_cols=60 Identities=25% Similarity=0.344 Sum_probs=37.6
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N 63 (139)
..+++++.+.+..+ +...-...|..+..++.+.+.+ .+.......+..+..++.+++..+
T Consensus 32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred cccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence 34567899999876 6634445688888899999976 444234456777889999998765
No 71
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.90 E-value=0.28 Score=22.29 Aligned_cols=14 Identities=50% Similarity=0.536 Sum_probs=8.6
Q ss_pred CCCcEEeccCCcCC
Q 046028 5 VSLYALNLSHNALT 18 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~ 18 (139)
++|+.|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.64 E-value=0.4 Score=34.77 Aligned_cols=63 Identities=27% Similarity=0.352 Sum_probs=44.3
Q ss_pred CCCCCcEEeccCCcCCCCCccccC----CCcccCeeccccccCCCcchH-----H---------hhcCCCCCeEEccCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFG----NLKHIESLDLSTNNLSGKISA-----Q---------LASLNFLSVLNLSYNN 64 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~----~l~~L~~L~l~~n~l~~~~p~-----~---------~~~l~~L~~l~l~~N~ 64 (139)
++++|+..+||.|-+....|+.+. +-+.|.+|.+++|.+- .+.+ + ...-+.|+.+....|+
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 578899999999999888876544 4577999999999875 2221 1 1234566777777776
Q ss_pred cc
Q 046028 65 LV 66 (139)
Q Consensus 65 l~ 66 (139)
+.
T Consensus 169 le 170 (388)
T COG5238 169 LE 170 (388)
T ss_pred hc
Confidence 64
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=0.026 Score=40.70 Aligned_cols=56 Identities=29% Similarity=0.349 Sum_probs=43.6
Q ss_pred CCCCCcEEeccCCcCCCCCcc--ccCCCcccCeeccccccCCCcchHH-----hhcCCCCCeEE
Q 046028 3 RFVSLYALNLSHNALTGSIPS--SFGNLKHIESLDLSTNNLSGKISAQ-----LASLNFLSVLN 59 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~--~~~~l~~L~~L~l~~n~l~~~~p~~-----~~~l~~L~~l~ 59 (139)
.+++|++|+|..|.|. .+.+ .+.++++|+.|.|..|...|.-+.. +.-+++|+.||
T Consensus 61 rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 61 RCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 4577889999999998 4443 4689999999999999998776654 45577777664
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=84.60 E-value=1.5 Score=33.62 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=17.0
Q ss_pred CCcEEeccC-CcCCCCCccccCCCcccCeeccccc
Q 046028 6 SLYALNLSH-NALTGSIPSSFGNLKHIESLDLSTN 39 (139)
Q Consensus 6 ~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~l~~n 39 (139)
+|+.|++++ +.++ .+|..+. .+|+.|++++|
T Consensus 73 sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 73 ELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred CCcEEEccCCCCcc-cCCchhh--hhhhheEccCc
Confidence 466777765 3343 5554332 35666666655
No 75
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=74.22 E-value=1.7 Score=32.06 Aligned_cols=65 Identities=28% Similarity=0.341 Sum_probs=34.2
Q ss_pred CCcEEeccCCc--CC-CCCccccCCCcccCeecccccc-CCCcchHHhhcCCCCCeEEccCCcccccCCCC
Q 046028 6 SLYALNLSHNA--LT-GSIPSSFGNLKHIESLDLSTNN-LSGKISAQLASLNFLSVLNLSYNNLVGKIPTS 72 (139)
Q Consensus 6 ~L~~L~Ls~N~--l~-g~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~ 72 (139)
+|+.|++++.+ +. ..+..-....++|.+|||++|- ++...-..+..+..|+++.++.++ +.+|..
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~ 355 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPET 355 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHH
Confidence 45566666543 11 1222223456777777877654 332233456666777776665443 345543
No 76
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=73.19 E-value=2.5 Score=39.43 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=26.9
Q ss_pred eccCCcCCCCCccccCCCcccCeeccccccCCCc
Q 046028 11 NLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGK 44 (139)
Q Consensus 11 ~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~ 44 (139)
||++|+|+-..+..|..+.+|+.|+|++|.+.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6889999944445688899999999999987653
No 77
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=71.67 E-value=4.5 Score=29.56 Aligned_cols=67 Identities=18% Similarity=0.257 Sum_probs=36.9
Q ss_pred CCCCcEEeccCCcCCCCCcc----ccCCCcccCeeccccccC---CCcchH-------HhhcCCCCCeEEccCCcccccC
Q 046028 4 FVSLYALNLSHNALTGSIPS----SFGNLKHIESLDLSTNNL---SGKISA-------QLASLNFLSVLNLSYNNLVGKI 69 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~----~~~~l~~L~~L~l~~n~l---~~~~p~-------~~~~l~~L~~l~l~~N~l~~~~ 69 (139)
+..+..++||+|.|.-.--. .+.+-.+|+..+++.-.. ...+++ .+-.|++|+..++|.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 45677889999988633222 333445555555554321 112222 2445667777777777766444
Q ss_pred C
Q 046028 70 P 70 (139)
Q Consensus 70 p 70 (139)
|
T Consensus 109 ~ 109 (388)
T COG5238 109 P 109 (388)
T ss_pred c
Confidence 4
No 78
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=68.98 E-value=4.6 Score=37.83 Aligned_cols=34 Identities=32% Similarity=0.262 Sum_probs=29.1
Q ss_pred ccccccCCCcchHHhhcCCCCCeEEccCCccccc
Q 046028 35 DLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK 68 (139)
Q Consensus 35 ~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 68 (139)
||++|+|+...+..|..+.+|+.|+|++|.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 6889999966667888899999999999988743
No 79
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.88 E-value=3.2 Score=32.80 Aligned_cols=11 Identities=45% Similarity=0.422 Sum_probs=5.8
Q ss_pred CCCCeEEccCC
Q 046028 53 NFLSVLNLSYN 63 (139)
Q Consensus 53 ~~L~~l~l~~N 63 (139)
++|..|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 44555555555
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=64.03 E-value=3.9 Score=32.39 Aligned_cols=63 Identities=30% Similarity=0.277 Sum_probs=30.6
Q ss_pred CCCCcEEeccCCcCCCCCc---cccCCCcccCeeccccccCCCcchHHhhcC--CCCCeEEccCCcccc
Q 046028 4 FVSLYALNLSHNALTGSIP---SSFGNLKHIESLDLSTNNLSGKISAQLASL--NFLSVLNLSYNNLVG 67 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p---~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l--~~L~~l~l~~N~l~~ 67 (139)
.+.+..++|++|++. .+. .--...+.|..|+|++|...-..-.++..+ ..|+.+-+.+|.+..
T Consensus 217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 445666777777765 221 112234567777777772111111122222 234566666666543
No 81
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=55.08 E-value=4 Score=22.57 Aligned_cols=13 Identities=31% Similarity=0.192 Sum_probs=0.0
Q ss_pred eeehhhhhheeee
Q 046028 122 IAMSIGFAVGFGA 134 (139)
Q Consensus 122 ~~~~~~~~~~~~~ 134 (139)
.++++|.++|+++
T Consensus 12 aavIaG~Vvgll~ 24 (64)
T PF01034_consen 12 AAVIAGGVVGLLF 24 (64)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3445555544433
No 82
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=52.65 E-value=1.5 Score=32.35 Aligned_cols=62 Identities=26% Similarity=0.285 Sum_probs=30.0
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccc-cCCCc-chHHhhcCCCCCeEEccCCccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTN-NLSGK-ISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
++|+.|.+.++++...+-..+..-..|+.++++.. .++.- ..--+..++.|+.|+++.+.+.
T Consensus 210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 34445555555555444444444455555555542 22210 1112455666666666666554
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=52.65 E-value=11 Score=16.30 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=6.6
Q ss_pred CCCcEEeccCCc
Q 046028 5 VSLYALNLSHNA 16 (139)
Q Consensus 5 ~~L~~L~Ls~N~ 16 (139)
++|+.|+++++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 455566665553
No 84
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=36.70 E-value=8.2 Score=26.77 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=9.8
Q ss_pred eeeeeehhhhhheeeeee
Q 046028 119 WFFIAMSIGFAVGFGAVI 136 (139)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~ 136 (139)
+.++|+++|+++.+++++
T Consensus 38 ~I~iaiVAG~~tVILVI~ 55 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIF 55 (221)
T ss_pred eeeeeeecchhhhHHHHH
Confidence 345566666666444443
No 85
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=36.59 E-value=12 Score=24.82 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=0.0
Q ss_pred eeeehhhhhheeeeee
Q 046028 121 FIAMSIGFAVGFGAVI 136 (139)
Q Consensus 121 ~~~~~~~~~~~~~~~~ 136 (139)
.+++++|++++++++.
T Consensus 131 LVGIIVGVLlaIG~ig 146 (162)
T PF05808_consen 131 LVGIIVGVLLAIGFIG 146 (162)
T ss_dssp ----------------
T ss_pred eeeehhhHHHHHHHHh
Confidence 4455556555554443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.19 E-value=9.3 Score=26.51 Aligned_cols=61 Identities=23% Similarity=0.190 Sum_probs=33.4
Q ss_pred CCCCCCcEEeccCCcCCCCC-ccccC-CCcccCeeccccc-cCCCcchHHhhcCCCCCeEEccC
Q 046028 2 GRFVSLYALNLSHNALTGSI-PSSFG-NLKHIESLDLSTN-NLSGKISAQLASLNFLSVLNLSY 62 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~-p~~~~-~l~~L~~L~l~~n-~l~~~~p~~~~~l~~L~~l~l~~ 62 (139)
..++.++.|.+.++.=.+.. -+.++ -.++|+.|+++.| +|+..=-..+..+++|+.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34566666666655421110 01122 3478999999976 44422223466677777776654
No 87
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=29.17 E-value=42 Score=25.40 Aligned_cols=10 Identities=40% Similarity=0.381 Sum_probs=4.4
Q ss_pred CCCcEEeccC
Q 046028 5 VSLYALNLSH 14 (139)
Q Consensus 5 ~~L~~L~Ls~ 14 (139)
++|+.|++++
T Consensus 214 ~~L~~L~l~~ 223 (482)
T KOG1947|consen 214 PNLEELDLSG 223 (482)
T ss_pred chhheecccC
Confidence 3444444443
No 88
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=27.39 E-value=5.3 Score=21.42 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=10.5
Q ss_pred eeeeeehhhhhheeeee
Q 046028 119 WFFIAMSIGFAVGFGAV 135 (139)
Q Consensus 119 ~~~~~~~~~~~~~~~~~ 135 (139)
|.++.+++|+++|...+
T Consensus 6 wlIIviVlgvIigNia~ 22 (55)
T PF11446_consen 6 WLIIVIVLGVIIGNIAA 22 (55)
T ss_pred hHHHHHHHHHHHhHHHH
Confidence 45556677777765543
No 89
>KOG2087 consensus Glycoprotein hormone receptor [Signal transduction mechanisms]
Probab=27.16 E-value=33 Score=25.83 Aligned_cols=44 Identities=11% Similarity=0.023 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcceeeeeehhhhhheeeeeeec
Q 046028 95 TNESQARPPELQPSPPPASSDEIDWFFIAMSIGFAVGFGAVISP 138 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (139)
...|.|.+.+..|.+......-.+..+|.+..-+++|..+|+..
T Consensus 5 ~~~C~P~~da~~pcEdllg~~~lRi~vW~i~~lAi~gN~~Vl~~ 48 (363)
T KOG2087|consen 5 VITCKPSPDAFNPCEDLLGYWILRISVWVIALLAIVGNLLVLLT 48 (363)
T ss_pred cceecCCCCCCCcHHHhhccceeeehhhhhhhHHhccCeeeeee
Confidence 34577666666666555555556667777777777887777654
No 90
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=24.60 E-value=8.7 Score=18.87 Aligned_cols=14 Identities=29% Similarity=0.603 Sum_probs=7.7
Q ss_pred eeehhhhhheeeee
Q 046028 122 IAMSIGFAVGFGAV 135 (139)
Q Consensus 122 ~~~~~~~~~~~~~~ 135 (139)
+++++|+++|++++
T Consensus 6 IaIIv~V~vg~~ii 19 (38)
T PF02439_consen 6 IAIIVAVVVGMAII 19 (38)
T ss_pred hhHHHHHHHHHHHH
Confidence 45566666655443
No 91
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=24.35 E-value=32 Score=22.59 Aligned_cols=11 Identities=18% Similarity=0.392 Sum_probs=5.4
Q ss_pred ceeeeeehhhh
Q 046028 118 DWFFIAMSIGF 128 (139)
Q Consensus 118 ~~~~~~~~~~~ 128 (139)
+..+++++||+
T Consensus 48 knIVIGvVVGV 58 (154)
T PF04478_consen 48 KNIVIGVVVGV 58 (154)
T ss_pred ccEEEEEEecc
Confidence 33445555553
No 92
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=20.10 E-value=14 Score=22.16 Aligned_cols=6 Identities=17% Similarity=0.445 Sum_probs=2.3
Q ss_pred eeehhh
Q 046028 122 IAMSIG 127 (139)
Q Consensus 122 ~~~~~~ 127 (139)
.++++|
T Consensus 69 agi~vg 74 (96)
T PTZ00382 69 AGISVA 74 (96)
T ss_pred EEEEee
Confidence 333333
Done!