Query 046028
Match_columns 139
No_of_seqs 195 out of 2651
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 13:55:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 99.7 1.3E-18 4.4E-23 137.2 6.7 100 2-102 653-752 (768)
2 1ogq_A PGIP-2, polygalacturona 99.6 1.9E-15 6.5E-20 108.0 6.3 96 1-98 217-312 (313)
3 1w8a_A SLIT protein; signaling 99.6 2.4E-15 8.2E-20 100.5 5.4 92 2-93 51-143 (192)
4 2wfh_A SLIT homolog 2 protein 99.5 8.1E-15 2.8E-19 98.2 6.5 91 2-92 51-142 (193)
5 3g39_A Variable lymphocyte rec 99.5 2.1E-14 7.2E-19 94.3 8.0 90 4-93 29-119 (170)
6 2v70_A SLIT-2, SLIT homolog 2 99.5 1.7E-14 5.9E-19 98.3 7.5 91 2-92 78-169 (220)
7 2r9u_A Variable lymphocyte rec 99.5 3.9E-14 1.3E-18 93.4 7.8 89 5-93 33-122 (174)
8 2ifg_A High affinity nerve gro 99.5 3.5E-14 1.2E-18 102.3 7.7 92 1-92 27-119 (347)
9 2v9t_B SLIT homolog 2 protein 99.5 5.2E-14 1.8E-18 95.9 7.7 90 2-91 77-167 (220)
10 4g8a_A TOLL-like receptor 4; l 99.5 6.9E-14 2.4E-18 107.0 7.5 92 1-92 490-583 (635)
11 2o6r_A Variable lymphocyte rec 99.5 2.4E-13 8.3E-18 89.4 8.5 90 2-91 49-139 (177)
12 3e6j_A Variable lymphocyte rec 99.5 2E-13 6.7E-18 93.5 8.4 90 2-92 85-175 (229)
13 3rgz_A Protein brassinosteroid 99.5 6E-14 2.1E-18 110.7 5.6 92 2-93 629-721 (768)
14 2o6s_A Variable lymphocyte rec 99.4 5.5E-13 1.9E-17 89.7 8.8 90 3-92 74-164 (208)
15 3m19_A Variable lymphocyte rec 99.4 4.6E-13 1.6E-17 92.7 8.4 90 2-91 104-194 (251)
16 3rfs_A Internalin B, repeat mo 99.4 8.4E-13 2.9E-17 92.4 8.8 92 2-93 130-222 (272)
17 1p9a_G Platelet glycoprotein I 99.4 9.6E-13 3.3E-17 93.1 8.3 88 4-91 123-210 (290)
18 2v9t_B SLIT homolog 2 protein 99.4 8E-13 2.7E-17 90.0 7.3 86 2-87 53-139 (220)
19 2v70_A SLIT-2, SLIT homolog 2 99.4 6.9E-13 2.4E-17 90.3 7.0 88 2-89 54-142 (220)
20 2o6q_A Variable lymphocyte rec 99.4 1.9E-12 6.4E-17 90.5 8.6 91 2-92 130-221 (270)
21 3v47_A TOLL-like receptor 5B a 99.4 9.6E-13 3.3E-17 97.6 7.3 92 2-93 320-412 (455)
22 3zyj_A Leucine-rich repeat-con 99.4 8E-13 2.7E-17 98.2 5.8 91 2-92 204-295 (440)
23 3zyi_A Leucine-rich repeat-con 99.3 1.3E-12 4.6E-17 97.3 6.6 91 2-92 215-306 (452)
24 3vq2_A TLR4, TOLL-like recepto 99.3 2.1E-12 7.3E-17 98.9 7.3 93 1-93 469-562 (606)
25 3e6j_A Variable lymphocyte rec 99.3 4.3E-12 1.5E-16 86.8 7.9 81 6-86 41-122 (229)
26 4g8a_A TOLL-like receptor 4; l 99.3 3.3E-12 1.1E-16 97.7 7.1 86 2-87 73-159 (635)
27 3m19_A Variable lymphocyte rec 99.3 7.2E-12 2.5E-16 86.6 8.2 85 2-86 56-141 (251)
28 2wfh_A SLIT homolog 2 protein 99.3 5.9E-12 2E-16 84.1 7.5 84 5-89 31-115 (193)
29 2o6s_A Variable lymphocyte rec 99.3 1.1E-11 3.6E-16 83.4 8.4 85 3-87 50-135 (208)
30 1ogq_A PGIP-2, polygalacturona 99.3 1.3E-12 4.5E-17 93.2 3.5 85 3-87 74-160 (313)
31 2je0_A Acidic leucine-rich nuc 99.3 5.4E-12 1.8E-16 80.6 6.1 82 3-86 40-123 (149)
32 3j0a_A TOLL-like receptor 5; m 99.3 3.7E-13 1.3E-17 107.2 0.5 87 3-93 478-564 (844)
33 2z66_A Variable lymphocyte rec 99.3 6.4E-12 2.2E-16 89.0 6.8 89 3-91 173-263 (306)
34 1ozn_A Reticulon 4 receptor; N 99.3 2.1E-12 7.2E-17 90.7 3.8 84 3-86 127-211 (285)
35 1w8a_A SLIT protein; signaling 99.3 1.1E-11 3.6E-16 82.7 6.8 85 5-89 29-115 (192)
36 2z63_A TOLL-like receptor 4, v 99.3 6.4E-12 2.2E-16 95.5 6.2 92 2-93 442-535 (570)
37 4fcg_A Uncharacterized protein 99.3 1.1E-11 3.7E-16 89.1 6.9 87 3-91 181-268 (328)
38 2ell_A Acidic leucine-rich nuc 99.3 8.3E-12 2.8E-16 81.3 5.8 85 2-88 46-132 (168)
39 2ell_A Acidic leucine-rich nuc 99.3 7.4E-12 2.5E-16 81.5 5.4 83 4-88 23-107 (168)
40 4ezg_A Putative uncharacterize 99.2 9.4E-12 3.2E-16 83.2 5.9 86 2-87 85-170 (197)
41 3rfs_A Internalin B, repeat mo 99.2 3.7E-11 1.2E-15 84.0 9.0 84 3-86 83-167 (272)
42 1p9a_G Platelet glycoprotein I 99.2 2.5E-11 8.5E-16 85.8 8.2 86 3-88 98-184 (290)
43 2o6r_A Variable lymphocyte rec 99.2 4E-11 1.4E-15 78.7 7.9 85 4-88 27-112 (177)
44 2xot_A Amphoterin-induced prot 99.2 1.8E-11 6E-16 88.9 6.3 84 3-86 62-146 (361)
45 3g39_A Variable lymphocyte rec 99.2 2.8E-11 9.6E-16 79.3 6.7 70 1-70 50-119 (170)
46 2xot_A Amphoterin-induced prot 99.2 1.5E-11 5E-16 89.3 5.8 68 2-69 85-152 (361)
47 2id5_A Lingo-1, leucine rich r 99.2 8E-12 2.7E-16 93.4 4.1 90 2-91 245-335 (477)
48 2o6q_A Variable lymphocyte rec 99.2 5.9E-11 2E-15 82.8 8.3 86 2-87 82-168 (270)
49 3t6q_A CD180 antigen; protein- 99.2 5E-12 1.7E-16 96.9 3.0 90 3-93 474-564 (606)
50 2je0_A Acidic leucine-rich nuc 99.2 1.2E-11 4E-16 79.0 4.2 83 1-83 60-147 (149)
51 3v47_A TOLL-like receptor 5B a 99.2 2.9E-11 1E-15 89.7 6.9 88 2-89 296-384 (455)
52 1ziw_A TOLL-like receptor 3; i 99.2 1.7E-11 5.7E-16 95.2 5.8 91 2-93 533-626 (680)
53 4b8c_D Glucose-repressible alc 99.2 1.8E-11 6.2E-16 96.3 5.9 84 3-88 245-328 (727)
54 4fcg_A Uncharacterized protein 99.2 2.2E-11 7.5E-16 87.4 5.9 91 2-93 203-294 (328)
55 1dce_A Protein (RAB geranylger 99.2 2.4E-11 8.1E-16 93.3 5.9 82 3-87 461-544 (567)
56 1ozn_A Reticulon 4 receptor; N 99.2 7.9E-11 2.7E-15 82.6 7.9 86 2-87 77-164 (285)
57 3vq2_A TLR4, TOLL-like recepto 99.2 4.4E-11 1.5E-15 91.7 6.9 86 2-87 53-139 (606)
58 4ezg_A Putative uncharacterize 99.2 4.9E-11 1.7E-15 79.7 6.2 84 1-87 108-192 (197)
59 2r9u_A Variable lymphocyte rec 99.2 7.7E-11 2.6E-15 77.5 6.7 70 1-70 53-122 (174)
60 1wwl_A Monocyte differentiatio 99.1 5.2E-11 1.8E-15 84.8 5.9 84 3-87 93-184 (312)
61 2z62_A TOLL-like receptor 4, v 99.1 8E-11 2.7E-15 82.2 6.6 63 4-66 51-113 (276)
62 2z81_A CD282 antigen, TOLL-lik 99.1 9.2E-11 3.1E-15 88.9 7.3 87 1-87 46-134 (549)
63 2z80_A TOLL-like receptor 2, v 99.1 1E-10 3.4E-15 84.5 7.2 86 2-87 73-160 (353)
64 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.3E-10 4.3E-15 88.7 7.7 63 29-92 450-513 (562)
65 3zyi_A Leucine-rich repeat-con 99.1 9E-11 3.1E-15 87.4 6.7 65 3-67 97-161 (452)
66 3o6n_A APL1; leucine-rich repe 99.1 1.9E-10 6.6E-15 83.9 8.3 85 3-87 91-176 (390)
67 3t6q_A CD180 antigen; protein- 99.1 6.2E-11 2.1E-15 90.8 5.8 84 3-86 55-139 (606)
68 3oja_B Anopheles plasmodium-re 99.1 1.7E-10 5.7E-15 88.8 8.2 86 2-87 96-182 (597)
69 2id5_A Lingo-1, leucine rich r 99.1 8.6E-11 2.9E-15 87.8 6.4 84 3-86 54-138 (477)
70 1a9n_A U2A', U2A'; complex (nu 99.1 4.3E-11 1.5E-15 78.6 4.2 83 5-89 42-126 (176)
71 3zyj_A Leucine-rich repeat-con 99.1 1.3E-10 4.4E-15 86.3 7.1 84 2-85 85-169 (440)
72 2z66_A Variable lymphocyte rec 99.1 9E-11 3.1E-15 83.0 5.7 85 3-87 124-210 (306)
73 2z7x_B TOLL-like receptor 1, v 99.1 2E-10 6.9E-15 86.6 7.9 85 5-92 399-484 (520)
74 1a9n_A U2A', U2A'; complex (nu 99.1 5.5E-11 1.9E-15 78.0 4.1 82 3-88 17-100 (176)
75 2ft3_A Biglycan; proteoglycan, 99.1 1.9E-10 6.5E-15 82.4 7.2 86 5-90 193-278 (332)
76 4eco_A Uncharacterized protein 99.1 1.9E-10 6.5E-15 89.2 7.7 82 5-88 488-578 (636)
77 1xku_A Decorin; proteoglycan, 99.1 1.8E-10 6.3E-15 82.3 6.8 85 5-89 192-276 (330)
78 4b8c_D Glucose-repressible alc 99.1 1.9E-10 6.6E-15 90.5 7.1 84 2-88 221-305 (727)
79 2z62_A TOLL-like receptor 4, v 99.1 1.8E-10 6E-15 80.5 5.8 84 3-86 74-159 (276)
80 4eco_A Uncharacterized protein 99.1 1.1E-10 3.6E-15 90.6 4.9 85 3-88 247-342 (636)
81 3o6n_A APL1; leucine-rich repe 99.1 1.6E-10 5.4E-15 84.4 5.2 87 3-89 67-154 (390)
82 2z63_A TOLL-like receptor 4, v 99.0 2.9E-10 9.9E-15 86.3 6.6 86 2-87 49-135 (570)
83 2z7x_B TOLL-like receptor 1, v 99.0 2.2E-10 7.6E-15 86.4 5.7 81 5-87 21-101 (520)
84 2ft3_A Biglycan; proteoglycan, 99.0 4.1E-10 1.4E-14 80.6 6.8 87 2-89 214-307 (332)
85 3j0a_A TOLL-like receptor 5; m 99.0 2.4E-10 8.3E-15 91.1 6.2 86 2-87 70-159 (844)
86 1xku_A Decorin; proteoglycan, 99.0 4E-10 1.4E-14 80.6 6.6 85 2-89 168-253 (330)
87 4glp_A Monocyte differentiatio 99.0 3.5E-10 1.2E-14 80.4 6.2 84 2-88 194-284 (310)
88 4fmz_A Internalin; leucine ric 99.0 5.1E-10 1.7E-14 80.3 7.0 82 3-88 241-323 (347)
89 1wwl_A Monocyte differentiatio 99.0 8.9E-11 3E-15 83.6 3.0 65 2-67 118-187 (312)
90 3oja_B Anopheles plasmodium-re 99.0 2.9E-10 9.9E-15 87.5 5.9 87 3-89 73-160 (597)
91 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 3.7E-10 1.3E-14 86.1 6.5 82 5-88 52-133 (562)
92 1dce_A Protein (RAB geranylger 99.0 4.4E-10 1.5E-14 86.3 6.9 69 2-72 483-552 (567)
93 2xwt_C Thyrotropin receptor; s 99.0 1.6E-10 5.6E-15 79.1 3.9 83 3-86 53-140 (239)
94 1ziw_A TOLL-like receptor 3; i 99.0 4.2E-10 1.4E-14 87.4 6.4 81 6-86 26-107 (680)
95 2z81_A CD282 antigen, TOLL-lik 99.0 1.7E-10 5.8E-15 87.4 4.1 85 5-89 26-111 (549)
96 3o53_A Protein LRIM1, AGAP0063 99.0 4.3E-10 1.5E-14 80.2 5.5 85 4-91 168-252 (317)
97 3oja_A Leucine-rich immune mol 99.0 3.1E-10 1.1E-14 85.5 4.9 85 4-91 168-252 (487)
98 4ecn_A Leucine-rich repeat pro 99.0 2.7E-10 9.1E-15 91.3 4.4 85 3-88 489-585 (876)
99 4ecn_A Leucine-rich repeat pro 99.0 1.6E-09 5.4E-14 86.9 7.9 83 4-88 727-818 (876)
100 2ifg_A High affinity nerve gro 99.0 9.8E-10 3.4E-14 79.0 6.2 80 8-89 11-93 (347)
101 2z80_A TOLL-like receptor 2, v 99.0 3.8E-10 1.3E-14 81.4 4.0 85 5-89 52-137 (353)
102 1h6t_A Internalin B; cell adhe 98.9 2.3E-09 8E-14 75.7 7.1 78 4-86 111-188 (291)
103 4glp_A Monocyte differentiatio 98.9 1.8E-09 6E-14 76.7 6.4 81 6-86 92-179 (310)
104 3oja_A Leucine-rich immune mol 98.9 1.1E-09 3.7E-14 82.6 5.4 83 4-87 119-202 (487)
105 2xwt_C Thyrotropin receptor; s 98.9 6.2E-10 2.1E-14 76.2 3.5 84 5-88 31-117 (239)
106 1h6u_A Internalin H; cell adhe 98.9 3.7E-09 1.3E-13 75.1 7.4 15 52-66 150-164 (308)
107 1h6u_A Internalin H; cell adhe 98.9 3.4E-09 1.2E-13 75.3 6.8 60 4-67 128-187 (308)
108 1h6t_A Internalin B; cell adhe 98.9 1.8E-09 6E-14 76.3 5.1 84 2-90 131-214 (291)
109 1m9s_A Internalin B; cell inva 98.9 2.1E-09 7.2E-14 83.1 5.8 79 3-86 107-185 (605)
110 1m9s_A Internalin B; cell inva 98.9 5.1E-09 1.7E-13 81.0 7.7 82 2-88 128-209 (605)
111 1xeu_A Internalin C; cellular 98.8 7E-09 2.4E-13 72.2 7.1 78 4-87 62-139 (263)
112 3o53_A Protein LRIM1, AGAP0063 98.8 3.4E-09 1.2E-13 75.5 5.4 83 4-87 119-202 (317)
113 1xeu_A Internalin C; cellular 98.8 5.7E-09 1.9E-13 72.7 5.4 81 2-88 82-162 (263)
114 1o6v_A Internalin A; bacterial 98.8 5.9E-09 2E-13 77.9 5.0 81 4-89 308-388 (466)
115 4fmz_A Internalin; leucine ric 98.8 2E-08 7E-13 71.9 7.2 80 3-87 64-143 (347)
116 1o6v_A Internalin A; bacterial 98.8 1.8E-08 6.3E-13 75.2 7.2 61 4-68 264-324 (466)
117 1ds9_A Outer arm dynein; leuci 98.7 6.1E-11 2.1E-15 79.2 -6.6 60 4-66 47-106 (198)
118 1ds9_A Outer arm dynein; leuci 98.7 1.5E-10 5E-15 77.4 -5.3 85 3-90 68-154 (198)
119 3rw6_A Nuclear RNA export fact 98.7 2.3E-08 7.9E-13 70.0 4.9 66 3-70 168-237 (267)
120 3bz5_A Internalin-J, INLJ; leu 98.6 4.3E-08 1.5E-12 73.4 6.1 63 2-70 188-250 (457)
121 3bz5_A Internalin-J, INLJ; leu 98.6 7.7E-08 2.6E-12 72.0 7.5 79 2-88 167-245 (457)
122 2ast_B S-phase kinase-associat 98.6 5.4E-09 1.9E-13 74.6 0.2 60 4-63 92-152 (336)
123 4ay9_X Follicle-stimulating ho 98.6 5.8E-08 2E-12 70.0 5.4 84 5-88 30-116 (350)
124 2ca6_A RAN GTPase-activating p 98.6 3.9E-09 1.3E-13 77.0 -0.9 88 3-90 214-317 (386)
125 3cvr_A Invasion plasmid antige 98.6 1.2E-07 4.2E-12 72.9 7.0 55 5-67 100-154 (571)
126 3cvr_A Invasion plasmid antige 98.6 4.6E-08 1.6E-12 75.2 4.5 75 6-88 161-242 (571)
127 4ay9_X Follicle-stimulating ho 98.5 6.2E-08 2.1E-12 69.9 4.5 72 1-72 50-123 (350)
128 3goz_A Leucine-rich repeat-con 98.5 2.6E-08 9E-13 72.1 2.2 64 6-69 23-96 (362)
129 3g06_A SSPH2 (leucine-rich rep 98.5 2E-07 6.7E-12 72.4 6.3 77 5-89 221-297 (622)
130 1jl5_A Outer protein YOPM; leu 98.5 2.2E-07 7.5E-12 69.5 6.3 75 5-86 131-205 (454)
131 2ast_B S-phase kinase-associat 98.5 1.2E-08 4.1E-13 72.7 -0.6 64 3-66 116-182 (336)
132 3goz_A Leucine-rich repeat-con 98.5 2E-08 6.7E-13 72.8 -0.1 84 4-87 49-149 (362)
133 2ca6_A RAN GTPase-activating p 98.4 4.6E-08 1.6E-12 71.3 1.7 66 2-67 57-136 (386)
134 1jl5_A Outer protein YOPM; leu 98.4 1.6E-07 5.4E-12 70.2 3.3 78 5-90 317-410 (454)
135 3g06_A SSPH2 (leucine-rich rep 98.3 4.7E-07 1.6E-11 70.3 5.0 65 3-72 239-303 (622)
136 1z7x_W Ribonuclease inhibitor; 98.1 2E-07 6.7E-12 69.1 -0.9 61 6-66 314-383 (461)
137 3rw6_A Nuclear RNA export fact 98.1 2.7E-07 9.4E-12 64.6 -0.3 62 26-88 167-232 (267)
138 3sb4_A Hypothetical leucine ri 98.0 7.9E-06 2.7E-10 58.3 4.6 82 4-87 225-308 (329)
139 3sb4_A Hypothetical leucine ri 97.9 1.3E-05 4.3E-10 57.2 4.8 78 1-80 246-325 (329)
140 1z7x_W Ribonuclease inhibitor; 97.9 2.2E-06 7.4E-11 63.4 0.8 66 3-68 339-413 (461)
141 3un9_A NLR family member X1; l 97.7 2.7E-06 9.1E-11 62.1 -1.2 83 5-87 155-250 (372)
142 3un9_A NLR family member X1; l 97.7 7.7E-06 2.6E-10 59.7 0.8 65 3-67 181-253 (372)
143 3ogk_B Coronatine-insensitive 97.7 1.5E-05 5.3E-10 60.7 2.3 63 4-66 462-526 (592)
144 3ogk_B Coronatine-insensitive 97.7 5.6E-06 1.9E-10 63.1 -0.4 82 3-84 162-251 (592)
145 3rfe_A Platelet glycoprotein I 97.6 0.00019 6.5E-09 44.7 5.7 57 8-66 11-68 (130)
146 2p1m_B Transport inhibitor res 97.5 1E-05 3.6E-10 61.5 -1.2 60 28-87 455-517 (594)
147 1io0_A Tropomodulin; LRR prote 97.3 6.7E-05 2.3E-09 49.3 1.6 85 3-87 34-134 (185)
148 2p1m_B Transport inhibitor res 97.2 6.5E-05 2.2E-09 57.2 0.7 64 4-67 104-170 (594)
149 1io0_A Tropomodulin; LRR prote 97.2 0.00015 5.3E-09 47.6 2.4 85 3-87 63-162 (185)
150 3rfe_A Platelet glycoprotein I 97.1 0.00043 1.5E-08 43.0 3.6 39 5-43 31-69 (130)
151 2ra8_A Uncharacterized protein 97.1 7.7E-05 2.6E-09 54.3 -0.1 85 3-87 217-318 (362)
152 4fdw_A Leucine rich hypothetic 97.0 0.0014 4.7E-08 48.2 5.9 82 3-86 269-355 (401)
153 3e4g_A ATP synthase subunit S, 97.0 0.00022 7.6E-09 46.8 1.4 82 6-87 62-150 (176)
154 4fdw_A Leucine rich hypothetic 96.4 0.0051 1.8E-07 45.2 5.2 59 2-62 177-235 (401)
155 3e4g_A ATP synthase subunit S, 96.3 0.0011 3.8E-08 43.4 1.3 63 2-64 82-150 (176)
156 2ra8_A Uncharacterized protein 96.0 0.0031 1.1E-07 45.8 2.4 63 4-66 192-265 (362)
157 4h09_A Hypothetical leucine ri 95.1 0.057 1.9E-06 38.8 6.4 39 24-62 281-319 (379)
158 4fs7_A Uncharacterized protein 95.0 0.032 1.1E-06 40.5 4.7 58 4-63 296-353 (394)
159 4fs7_A Uncharacterized protein 94.8 0.028 9.7E-07 40.8 4.0 61 1-63 316-376 (394)
160 4gt6_A Cell surface protein; l 94.7 0.049 1.7E-06 39.5 5.1 36 25-61 307-342 (394)
161 4gt6_A Cell surface protein; l 94.6 0.066 2.2E-06 38.8 5.6 64 1-66 307-370 (394)
162 1pgv_A TMD-1, tropomodulin TMD 94.5 0.02 6.8E-07 38.1 2.3 63 4-66 40-111 (197)
163 4h09_A Hypothetical leucine ri 94.4 0.03 1E-06 40.3 3.3 62 1-63 282-343 (379)
164 1pgv_A TMD-1, tropomodulin TMD 93.4 0.045 1.5E-06 36.4 2.5 59 5-63 70-136 (197)
165 2lz0_A Uncharacterized protein 53.1 19 0.00066 20.6 3.7 46 16-62 7-52 (100)
166 2ls4_A High affinity copper up 34.8 12 0.00041 16.1 0.0 15 119-133 4-18 (26)
167 2k1k_A Ephrin type-A receptor 27.8 2.8 9.5E-05 19.9 -2.4 13 121-133 13-25 (38)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=1.3e-18 Score=137.21 Aligned_cols=100 Identities=40% Similarity=0.725 Sum_probs=90.6
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l 81 (139)
+.++.|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|..+..+++|+.+++++|+++|.+|...++.++...
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~ 732 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA 732 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGG
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred ccccCCCCCCCCCCCCCCCCC
Q 046028 82 SYEVNKGLYGPPLTNESQARP 102 (139)
Q Consensus 82 ~~~~n~~~c~~p~~~~~~~~~ 102 (139)
.|.||+++||.|.. .|....
T Consensus 733 ~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 733 KFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp GGCSCTEEESTTSC-CCCSCC
T ss_pred HhcCCchhcCCCCc-CCCCCc
Confidence 99999999999876 776443
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.58 E-value=1.9e-15 Score=107.97 Aligned_cols=96 Identities=35% Similarity=0.580 Sum_probs=86.1
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCC
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSP 80 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~ 80 (139)
+..+++|+.|++++|.+++..|. +..+++|+.|++++|++++.+|..+..+++|+.+++++|++++.+|....+.++..
T Consensus 217 ~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~ 295 (313)
T 1ogq_A 217 FGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV 295 (313)
T ss_dssp CCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCG
T ss_pred HhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccCh
Confidence 35688999999999999866555 88899999999999999999999999999999999999999999999888899999
Q ss_pred cccccCCCCCCCCCCCCC
Q 046028 81 TSYEVNKGLYGPPLTNES 98 (139)
Q Consensus 81 l~~~~n~~~c~~p~~~~~ 98 (139)
+.+.+|+++|+.|.. .|
T Consensus 296 l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 296 SAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGTCSSSEEESTTSS-CC
T ss_pred HHhcCCCCccCCCCC-CC
Confidence 999999999998765 35
No 3
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=2.4e-15 Score=100.54 Aligned_cols=92 Identities=29% Similarity=0.371 Sum_probs=79.8
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|++++.+|... .+.+++.
T Consensus 51 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (192)
T 1w8a_A 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130 (192)
T ss_dssp GGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCE
T ss_pred ccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCE
Confidence 457889999999999998888889999999999999999997777778889999999999999998877665 6788889
Q ss_pred cccccCCCCCCCC
Q 046028 81 TSYEVNKGLYGPP 93 (139)
Q Consensus 81 l~~~~n~~~c~~p 93 (139)
+.+.+|++.|..+
T Consensus 131 L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 131 LNLASNPFNCNCH 143 (192)
T ss_dssp EECTTCCBCCSGG
T ss_pred EEeCCCCccCcCc
Confidence 9999999888644
No 4
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=8.1e-15 Score=98.16 Aligned_cols=91 Identities=22% Similarity=0.216 Sum_probs=77.2
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|.++..++..+ .+.+++.
T Consensus 51 ~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 130 (193)
T 2wfh_A 51 SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130 (193)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccE
Confidence 457789999999999997777789999999999999999997777788899999999999999997666544 6788888
Q ss_pred cccccCCCCCCC
Q 046028 81 TSYEVNKGLYGP 92 (139)
Q Consensus 81 l~~~~n~~~c~~ 92 (139)
+.+.+|++.|..
T Consensus 131 L~L~~N~~~C~c 142 (193)
T 2wfh_A 131 LAIGANPLYCDC 142 (193)
T ss_dssp EECCSSCEECSG
T ss_pred EEeCCCCeecCC
Confidence 999999998853
No 5
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=2.1e-14 Score=94.30 Aligned_cols=90 Identities=23% Similarity=0.185 Sum_probs=80.2
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTS 82 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~ 82 (139)
.++++.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|++++.++..+ .+.+++.+.
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 3679999999999998888899999999999999999997777778999999999999999998777644 788999999
Q ss_pred cccCCCCCCCC
Q 046028 83 YEVNKGLYGPP 93 (139)
Q Consensus 83 ~~~n~~~c~~p 93 (139)
+.+|++.|..+
T Consensus 109 L~~N~~~c~c~ 119 (170)
T 3g39_A 109 LLNNPWDCACS 119 (170)
T ss_dssp CCSSCBCTTBG
T ss_pred eCCCCCCCCch
Confidence 99999988653
No 6
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=98.30 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=66.1
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.+++++|++++..|..+ .+.+++.
T Consensus 78 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 78 EGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 456677777777777776666667777777777777777776667777777777777777777777666544 5667777
Q ss_pred cccccCCCCCCC
Q 046028 81 TSYEVNKGLYGP 92 (139)
Q Consensus 81 l~~~~n~~~c~~ 92 (139)
+.+.+|++.|..
T Consensus 158 L~L~~N~l~c~c 169 (220)
T 2v70_A 158 LNLLANPFNCNC 169 (220)
T ss_dssp EECCSCCEECSG
T ss_pred EEecCcCCcCCC
Confidence 778888877754
No 7
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=3.9e-14 Score=93.42 Aligned_cols=89 Identities=21% Similarity=0.198 Sum_probs=78.8
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSY 83 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l~~ 83 (139)
++|+.|++++|++++..|..|..+++|+.|++++|++++..+..+..+++|+.|++++|++++.++.. ..+.+++.+.+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 67999999999999888889999999999999999999766666789999999999999999877763 47889999999
Q ss_pred ccCCCCCCCC
Q 046028 84 EVNKGLYGPP 93 (139)
Q Consensus 84 ~~n~~~c~~p 93 (139)
.+|++.|...
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999988643
No 8
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.51 E-value=3.5e-14 Score=102.33 Aligned_cols=92 Identities=18% Similarity=0.065 Sum_probs=81.2
Q ss_pred CCCCCCCcEEeccC-CcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCC
Q 046028 1 MGRFVSLYALNLSH-NALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS 79 (139)
Q Consensus 1 l~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~ 79 (139)
+..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++.++..+....|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 35678899999996 99997777889999999999999999999888899999999999999999998877766555588
Q ss_pred CcccccCCCCCCC
Q 046028 80 PTSYEVNKGLYGP 92 (139)
Q Consensus 80 ~l~~~~n~~~c~~ 92 (139)
.+.+.+|++.|..
T Consensus 107 ~l~l~~N~~~c~c 119 (347)
T 2ifg_A 107 ELVLSGNPLHCSC 119 (347)
T ss_dssp EEECCSSCCCCCG
T ss_pred EEEeeCCCccCCC
Confidence 8999999988853
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=5.2e-14 Score=95.93 Aligned_cols=90 Identities=22% Similarity=0.173 Sum_probs=58.9
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|+|++|.++...+..|..+++|+.|++++|++++..|..+..+++|+.+++++|.+++.++... .+.+++.
T Consensus 77 ~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 77 QGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred hCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 445666666666666663333345666667777777777766666666677777777777777776655433 4666777
Q ss_pred cccccCCCCCC
Q 046028 81 TSYEVNKGLYG 91 (139)
Q Consensus 81 l~~~~n~~~c~ 91 (139)
+.+.+|++.|.
T Consensus 157 L~L~~N~~~c~ 167 (220)
T 2v9t_B 157 MHLAQNPFICD 167 (220)
T ss_dssp EECCSSCEECS
T ss_pred EEeCCCCcCCC
Confidence 77777777774
No 10
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.48 E-value=6.9e-14 Score=107.03 Aligned_cols=92 Identities=23% Similarity=0.258 Sum_probs=83.1
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-cc-CCC
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QL-QSF 78 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l-~~l 78 (139)
+..+++|+.|+|++|++++..|..|.++++|+.|++++|++++..|..+..+++|+.|++++|++++.+|... .+ .++
T Consensus 490 ~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L 569 (635)
T 4g8a_A 490 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 569 (635)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTC
T ss_pred hhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcC
Confidence 3568899999999999998889999999999999999999998888889999999999999999999888765 34 578
Q ss_pred CCcccccCCCCCCC
Q 046028 79 SPTSYEVNKGLYGP 92 (139)
Q Consensus 79 ~~l~~~~n~~~c~~ 92 (139)
+.+.+.+|++.|..
T Consensus 570 ~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 570 AFLNLTQNDFACTC 583 (635)
T ss_dssp CEEECTTCCBCCSG
T ss_pred CEEEeeCCCCcccC
Confidence 89999999999964
No 11
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=2.4e-13 Score=89.38 Aligned_cols=90 Identities=22% Similarity=0.197 Sum_probs=55.1
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+++.++... .+.+++.
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 128 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128 (177)
T ss_dssp TTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCE
Confidence 345666666666666664444445666666666666666665555555666666666666666665544432 4556666
Q ss_pred cccccCCCCCC
Q 046028 81 TSYEVNKGLYG 91 (139)
Q Consensus 81 l~~~~n~~~c~ 91 (139)
+.+.+|+..|.
T Consensus 129 L~l~~N~~~~~ 139 (177)
T 2o6r_A 129 IWLHTNPWDCS 139 (177)
T ss_dssp EECCSSCBCCC
T ss_pred EEecCCCeecc
Confidence 66666666654
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=2e-13 Score=93.52 Aligned_cols=90 Identities=23% Similarity=0.227 Sum_probs=60.9
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|+|++|++++..+..|..+++|+.|++++|+++ .+|..+..+++|+.+++++|++++.++... .+.+++.
T Consensus 85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 34566677777777776444455666777777777777776 566666777777777777777776555433 5667777
Q ss_pred cccccCCCCCCC
Q 046028 81 TSYEVNKGLYGP 92 (139)
Q Consensus 81 l~~~~n~~~c~~ 92 (139)
+.+.+|++.|..
T Consensus 164 L~l~~N~~~c~c 175 (229)
T 3e6j_A 164 AYLFGNPWDCEC 175 (229)
T ss_dssp EECTTSCBCTTB
T ss_pred EEeeCCCccCCc
Confidence 777888777754
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.45 E-value=6e-14 Score=110.70 Aligned_cols=92 Identities=30% Similarity=0.430 Sum_probs=83.1
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
+.+++|+.||+++|+++|.+|..++.+++|+.|++++|+++|.+|..+..+++|+.+|+++|+++|.+|... .+..++.
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 457889999999999999999999999999999999999999999999999999999999999999999875 7788889
Q ss_pred cccccCCCCCCCC
Q 046028 81 TSYEVNKGLYGPP 93 (139)
Q Consensus 81 l~~~~n~~~c~~p 93 (139)
+++..|+.....|
T Consensus 709 L~ls~N~l~g~iP 721 (768)
T 3rgz_A 709 IDLSNNNLSGPIP 721 (768)
T ss_dssp EECCSSEEEEECC
T ss_pred EECcCCcccccCC
Confidence 9998886544333
No 14
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=5.5e-13 Score=89.74 Aligned_cols=90 Identities=27% Similarity=0.207 Sum_probs=46.9
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l 81 (139)
.+++|+.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.+++++|.+++.++.. ..+.+++.+
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 3455555555555555333333455555555555555555444444555555555555555555444432 234555555
Q ss_pred ccccCCCCCCC
Q 046028 82 SYEVNKGLYGP 92 (139)
Q Consensus 82 ~~~~n~~~c~~ 92 (139)
.+.+|++.|..
T Consensus 154 ~l~~N~~~~~~ 164 (208)
T 2o6s_A 154 WLHDNPWDCTC 164 (208)
T ss_dssp ECCSCCBCCCT
T ss_pred EecCCCeecCC
Confidence 56666555543
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=4.6e-13 Score=92.65 Aligned_cols=90 Identities=23% Similarity=0.219 Sum_probs=58.5
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.+++++|++++.++... .+.+++.
T Consensus 104 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 345666666666666664444445666777777777777765555566667777777777777776555433 5566777
Q ss_pred cccccCCCCCC
Q 046028 81 TSYEVNKGLYG 91 (139)
Q Consensus 81 l~~~~n~~~c~ 91 (139)
+.+.+|++.|.
T Consensus 184 L~l~~N~~~c~ 194 (251)
T 3m19_A 184 ITLFGNQFDCS 194 (251)
T ss_dssp EECCSCCBCTT
T ss_pred EEeeCCceeCC
Confidence 77777777664
No 16
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.41 E-value=8.4e-13 Score=92.38 Aligned_cols=92 Identities=27% Similarity=0.246 Sum_probs=58.7
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~ 80 (139)
..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+++.++.. ..+.+++.
T Consensus 130 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (272)
T 3rfs_A 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 209 (272)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCE
Confidence 34566666666666666444445566666666666666666555555666667777777777777655543 25666777
Q ss_pred cccccCCCCCCCC
Q 046028 81 TSYEVNKGLYGPP 93 (139)
Q Consensus 81 l~~~~n~~~c~~p 93 (139)
+.+.+|++.|..|
T Consensus 210 L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 210 IWLHDNPWDCTCP 222 (272)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEccCCCccccCc
Confidence 7777777766543
No 17
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.40 E-value=9.6e-13 Score=93.11 Aligned_cols=88 Identities=24% Similarity=0.146 Sum_probs=44.6
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (139)
+++|+.|++++|++++..+..|..+++|+.|++++|+++...+..+..+++|+.+++++|+++..++.......++.+.+
T Consensus 123 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 44444455555544433333344445555555555555433333344455555555555555533333334445666677
Q ss_pred ccCCCCCC
Q 046028 84 EVNKGLYG 91 (139)
Q Consensus 84 ~~n~~~c~ 91 (139)
.+|++.|.
T Consensus 203 ~~Np~~C~ 210 (290)
T 1p9a_G 203 HGNPWLCN 210 (290)
T ss_dssp CSCCBCCS
T ss_pred CCCCccCc
Confidence 78888774
No 18
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.39 E-value=8e-13 Score=90.01 Aligned_cols=86 Identities=23% Similarity=0.274 Sum_probs=52.4
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|+|++|++++..|..|..+++|+.|++++|+++...+..+..+++|+.+++++|.+++..+..+ .+.+++.
T Consensus 53 ~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 53 SPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 345566666666666665556666666666666666666664444445666666666666666665555443 4556666
Q ss_pred cccccCC
Q 046028 81 TSYEVNK 87 (139)
Q Consensus 81 l~~~~n~ 87 (139)
+.+.+|.
T Consensus 133 L~L~~N~ 139 (220)
T 2v9t_B 133 LSLYDNK 139 (220)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 6665554
No 19
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=6.9e-13 Score=90.32 Aligned_cols=88 Identities=22% Similarity=0.177 Sum_probs=72.2
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|.+++..|..+ .+.+++.
T Consensus 54 ~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 133 (220)
T 2v70_A 54 KKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRL 133 (220)
T ss_dssp GGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSE
T ss_pred ccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCE
Confidence 457788899999999987666788889999999999999987777778889999999999999988777654 6777888
Q ss_pred cccccCCCC
Q 046028 81 TSYEVNKGL 89 (139)
Q Consensus 81 l~~~~n~~~ 89 (139)
+.+.+|...
T Consensus 134 L~L~~N~l~ 142 (220)
T 2v70_A 134 LSLYDNQIT 142 (220)
T ss_dssp EECTTSCCC
T ss_pred EECCCCcCC
Confidence 888777543
No 20
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.38 E-value=1.9e-12 Score=90.47 Aligned_cols=91 Identities=21% Similarity=0.169 Sum_probs=57.2
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|.+++..+..|..+++|+.|++++|+++...+..+..+++|+.+++++|.+++.++... .+.+++.
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 345566666666666664433446666666666776666665555556666777777777777765554433 4566677
Q ss_pred cccccCCCCCCC
Q 046028 81 TSYEVNKGLYGP 92 (139)
Q Consensus 81 l~~~~n~~~c~~ 92 (139)
+.+.+|++.|..
T Consensus 210 L~l~~N~~~c~c 221 (270)
T 2o6q_A 210 LQLQENPWDCTC 221 (270)
T ss_dssp EECCSSCBCCSS
T ss_pred EEecCCCeeCCC
Confidence 777777777653
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.37 E-value=9.6e-13 Score=97.65 Aligned_cols=92 Identities=28% Similarity=0.224 Sum_probs=65.2
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.+++++|++++.++... .+++++.
T Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence 456677777777777766666667777777777777777776667777777777777777777776555442 5667777
Q ss_pred cccccCCCCCCCC
Q 046028 81 TSYEVNKGLYGPP 93 (139)
Q Consensus 81 l~~~~n~~~c~~p 93 (139)
+.+.+|+..|..|
T Consensus 400 L~l~~N~l~~~~~ 412 (455)
T 3v47_A 400 IWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEccCCCcccCCC
Confidence 7777887777655
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.35 E-value=8e-13 Score=98.17 Aligned_cols=91 Identities=23% Similarity=0.201 Sum_probs=78.0
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|++++.++... .+.+++.
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 283 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLER 283 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCE
T ss_pred CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCE
Confidence 456788888888998887778889999999999999999998778888899999999999999997776654 6788899
Q ss_pred cccccCCCCCCC
Q 046028 81 TSYEVNKGLYGP 92 (139)
Q Consensus 81 l~~~~n~~~c~~ 92 (139)
+.+.+|++.|..
T Consensus 284 L~L~~Np~~CdC 295 (440)
T 3zyj_A 284 IHLHHNPWNCNC 295 (440)
T ss_dssp EECCSSCEECSS
T ss_pred EEcCCCCccCCC
Confidence 999999998854
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.35 E-value=1.3e-12 Score=97.27 Aligned_cols=91 Identities=23% Similarity=0.158 Sum_probs=77.9
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|++++.++... .+.+++.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 294 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVE 294 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCE
T ss_pred cccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCE
Confidence 456788888888888887778889999999999999999998888888999999999999999997776654 6788889
Q ss_pred cccccCCCCCCC
Q 046028 81 TSYEVNKGLYGP 92 (139)
Q Consensus 81 l~~~~n~~~c~~ 92 (139)
+.+.+|++.|..
T Consensus 295 L~L~~Np~~CdC 306 (452)
T 3zyi_A 295 LHLHHNPWNCDC 306 (452)
T ss_dssp EECCSSCEECST
T ss_pred EEccCCCcCCCC
Confidence 999999988864
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.33 E-value=2.1e-12 Score=98.94 Aligned_cols=93 Identities=23% Similarity=0.152 Sum_probs=79.8
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccC-CCC
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQ-SFS 79 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~-~l~ 79 (139)
+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+..+++|+.+++++|+++..++....+. +++
T Consensus 469 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLA 548 (606)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCC
T ss_pred hccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCc
Confidence 3567889999999999998888889999999999999999998889999999999999999999996555544554 588
Q ss_pred CcccccCCCCCCCC
Q 046028 80 PTSYEVNKGLYGPP 93 (139)
Q Consensus 80 ~l~~~~n~~~c~~p 93 (139)
.+.+.+|++.|..+
T Consensus 549 ~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 549 FFNLTNNSVACICE 562 (606)
T ss_dssp EEECCSCCCCCSST
T ss_pred EEEccCCCcccCCc
Confidence 89999999999755
No 25
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=4.3e-12 Score=86.81 Aligned_cols=81 Identities=26% Similarity=0.260 Sum_probs=38.3
Q ss_pred CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcccc
Q 046028 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSYE 84 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~~~ 84 (139)
+|+.|++++|.+++..|..|..+++|+.|++++|+++...+..+..+++|+.|++++|.+++.++..+ .+.+++.+.+.
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 120 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMC 120 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEecc
Confidence 44555555555554444445555555555555555543333334445555555555555554433322 34444444444
Q ss_pred cC
Q 046028 85 VN 86 (139)
Q Consensus 85 ~n 86 (139)
+|
T Consensus 121 ~N 122 (229)
T 3e6j_A 121 CN 122 (229)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.31 E-value=3.3e-12 Score=97.70 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=52.4
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~ 80 (139)
.++++|+.|||++|+|++..|..|.++++|++|++++|++++..+..|.++.+|++|++++|++++.++.. ..+.+++.
T Consensus 73 ~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~ 152 (635)
T 4g8a_A 73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152 (635)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence 45566666666666666444555666666666666666666444455666666666666666666555433 24555666
Q ss_pred cccccCC
Q 046028 81 TSYEVNK 87 (139)
Q Consensus 81 l~~~~n~ 87 (139)
+.+.+|.
T Consensus 153 L~Ls~N~ 159 (635)
T 4g8a_A 153 LNVAHNL 159 (635)
T ss_dssp EECCSSC
T ss_pred eccccCc
Confidence 6665554
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.31 E-value=7.2e-12 Score=86.60 Aligned_cols=85 Identities=24% Similarity=0.231 Sum_probs=47.2
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|.+++..+..|..+++|+.|++++|+++...+..+..+++|+.+++++|.+++.++..+ .+.+++.
T Consensus 56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 135 (251)
T 3m19_A 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence 345556666666666665555555566666666666666664444455555566666666666554444332 3455555
Q ss_pred cccccC
Q 046028 81 TSYEVN 86 (139)
Q Consensus 81 l~~~~n 86 (139)
+.+.+|
T Consensus 136 L~Ls~N 141 (251)
T 3m19_A 136 LRLNTN 141 (251)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 555544
No 28
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=5.9e-12 Score=84.14 Aligned_cols=84 Identities=30% Similarity=0.343 Sum_probs=75.4
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSY 83 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~~ 83 (139)
++++.|++++|.++ .+|..|..+++|+.|++++|++++..+..|..+.+|+.|++++|.+++.++..+ .+.+++.+.+
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 57899999999999 888999999999999999999998888889999999999999999998887654 6788899988
Q ss_pred ccCCCC
Q 046028 84 EVNKGL 89 (139)
Q Consensus 84 ~~n~~~ 89 (139)
.+|...
T Consensus 110 ~~N~l~ 115 (193)
T 2wfh_A 110 HGNDIS 115 (193)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 888654
No 29
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=1.1e-11 Score=83.41 Aligned_cols=85 Identities=26% Similarity=0.257 Sum_probs=46.5
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l 81 (139)
.+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.+++++|.+++.++.. ..+.+++.+
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEE
Confidence 4555666666666665333344555666666666666665444444555666666666666665544433 244555555
Q ss_pred ccccCC
Q 046028 82 SYEVNK 87 (139)
Q Consensus 82 ~~~~n~ 87 (139)
.+.+|.
T Consensus 130 ~l~~N~ 135 (208)
T 2o6s_A 130 RLYQNQ 135 (208)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 555553
No 30
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.29 E-value=1.3e-12 Score=93.18 Aligned_cols=85 Identities=29% Similarity=0.512 Sum_probs=54.2
Q ss_pred CCCCCcEEeccC-CcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 3 RFVSLYALNLSH-NALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 3 ~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
++++|+.|++++ |.+.+.+|..+..+++|++|++++|++++.+|..+..+++|+++++++|.+.+.+|... .+.+++.
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 153 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCE
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCe
Confidence 456666666663 66666666666666666666666666666666666666666666666666665555433 4555666
Q ss_pred cccccCC
Q 046028 81 TSYEVNK 87 (139)
Q Consensus 81 l~~~~n~ 87 (139)
+.+.+|.
T Consensus 154 L~L~~N~ 160 (313)
T 1ogq_A 154 ITFDGNR 160 (313)
T ss_dssp EECCSSC
T ss_pred EECcCCc
Confidence 6665554
No 31
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=5.4e-12 Score=80.62 Aligned_cols=82 Identities=23% Similarity=0.246 Sum_probs=43.0
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC--CCCcccCCCCC
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI--PTSTQLQSFSP 80 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~--p~~~~l~~l~~ 80 (139)
.+++|+.|++++|.+++. ..+..+++|+.|++++|++++.+|..+..+++|+.+++++|.+++.. .....+++++.
T Consensus 40 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 40 EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 445555555555555533 44555555555555555555445555555555555555555555422 22234445555
Q ss_pred cccccC
Q 046028 81 TSYEVN 86 (139)
Q Consensus 81 l~~~~n 86 (139)
+.+.+|
T Consensus 118 L~l~~N 123 (149)
T 2je0_A 118 LDLFNC 123 (149)
T ss_dssp EECTTC
T ss_pred EeCcCC
Confidence 555544
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.28 E-value=3.7e-13 Score=107.18 Aligned_cols=87 Identities=28% Similarity=0.333 Sum_probs=56.4
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~ 82 (139)
.+++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+..+. ++|+.+++++|++++.+|.. +.++..+.
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~ 553 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLD 553 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEE
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEE
Confidence 345566666666666655555666666666666666666644444333 56666677777776666654 34677888
Q ss_pred cccCCCCCCCC
Q 046028 83 YEVNKGLYGPP 93 (139)
Q Consensus 83 ~~~n~~~c~~p 93 (139)
+.+|++.|..+
T Consensus 554 l~~Np~~C~c~ 564 (844)
T 3j0a_A 554 ITHNKFICECE 564 (844)
T ss_dssp EEEECCCCSSS
T ss_pred ecCCCcccccc
Confidence 89999999543
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.28 E-value=6.4e-12 Score=88.98 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=47.0
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-cc-CCCCC
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QL-QSFSP 80 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l-~~l~~ 80 (139)
.+++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+.+..+... .+ .+++.
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 34555555555555554445555555555555555555554444445555555555555555555444432 22 24555
Q ss_pred cccccCCCCCC
Q 046028 81 TSYEVNKGLYG 91 (139)
Q Consensus 81 l~~~~n~~~c~ 91 (139)
+.+.+|+..|.
T Consensus 253 L~L~~N~~~~~ 263 (306)
T 2z66_A 253 LNLTQNDFACT 263 (306)
T ss_dssp EECTTCCEECS
T ss_pred EEccCCCeecc
Confidence 55555555543
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.27 E-value=2.1e-12 Score=90.69 Aligned_cols=84 Identities=24% Similarity=0.225 Sum_probs=41.5
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l 81 (139)
.+++|+.|++++|.+++..+..+..+++|+.|++++|+++...+..+..+++|+.+++++|.+.+..|... .+.+++.+
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 34555555555555554333445555555555555555553333345555555555555555554433322 33344444
Q ss_pred ccccC
Q 046028 82 SYEVN 86 (139)
Q Consensus 82 ~~~~n 86 (139)
.+.+|
T Consensus 207 ~l~~n 211 (285)
T 1ozn_A 207 YLFAN 211 (285)
T ss_dssp ECCSS
T ss_pred eCCCC
Confidence 44333
No 35
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.1e-11 Score=82.71 Aligned_cols=85 Identities=21% Similarity=0.228 Sum_probs=74.6
Q ss_pred CCCcEEeccCCcCCCCCcc-ccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcc
Q 046028 5 VSLYALNLSHNALTGSIPS-SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTS 82 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~ 82 (139)
.+++.|++++|.+++..+. .|..+++|++|++++|++++..|..+..+.+|+.+++++|++++.++..+ .+.+++.+.
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 3789999999999965554 48999999999999999998889999999999999999999998888754 788899999
Q ss_pred cccCCCC
Q 046028 83 YEVNKGL 89 (139)
Q Consensus 83 ~~~n~~~ 89 (139)
+.+|...
T Consensus 109 L~~N~l~ 115 (192)
T 1w8a_A 109 LYDNQIS 115 (192)
T ss_dssp CCSSCCC
T ss_pred CCCCcCC
Confidence 9888654
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.26 E-value=6.4e-12 Score=95.46 Aligned_cols=92 Identities=26% Similarity=0.289 Sum_probs=66.6
Q ss_pred CCCCCCcEEeccCCcCC-CCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCC
Q 046028 2 GRFVSLYALNLSHNALT-GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFS 79 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~ 79 (139)
..+++|+.|++++|.++ +.+|..+..+++|+.|++++|++++..|..+..+++|+.+++++|.+++.++... .+.+++
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 34667777777777775 4667777777777777777777776667777777788888888887777666543 567777
Q ss_pred CcccccCCCCCCCC
Q 046028 80 PTSYEVNKGLYGPP 93 (139)
Q Consensus 80 ~l~~~~n~~~c~~p 93 (139)
.+.+.+|+..|..+
T Consensus 522 ~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 522 KIWLHTNPWDCSCP 535 (570)
T ss_dssp EEECCSSCBCCCTT
T ss_pred EEEecCCcccCCCc
Confidence 77777887777544
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.26 E-value=1.1e-11 Score=89.08 Aligned_cols=87 Identities=22% Similarity=0.300 Sum_probs=67.3
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l 81 (139)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.+.+.+|... .+.+++.+
T Consensus 181 ~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred cCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 3778888888888888 78888888888888888888888 456668888888888888888877777654 66777777
Q ss_pred ccccCCCCCC
Q 046028 82 SYEVNKGLYG 91 (139)
Q Consensus 82 ~~~~n~~~c~ 91 (139)
.+.+|.....
T Consensus 259 ~L~~n~~~~~ 268 (328)
T 4fcg_A 259 ILKDCSNLLT 268 (328)
T ss_dssp ECTTCTTCCB
T ss_pred ECCCCCchhh
Confidence 7777655443
No 38
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.26 E-value=8.3e-12 Score=81.27 Aligned_cols=85 Identities=26% Similarity=0.270 Sum_probs=65.7
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC--CCCcccCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI--PTSTQLQSFS 79 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~--p~~~~l~~l~ 79 (139)
..+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+..+++|+.+++++|.+++.. +....+.+++
T Consensus 46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 3567788888888888854 67888888888888888888767777777888888888888888643 3334677777
Q ss_pred CcccccCCC
Q 046028 80 PTSYEVNKG 88 (139)
Q Consensus 80 ~l~~~~n~~ 88 (139)
.+.+.+|+.
T Consensus 124 ~L~l~~N~l 132 (168)
T 2ell_A 124 SLDLFNCEV 132 (168)
T ss_dssp EEECCSSGG
T ss_pred EEEeeCCcC
Confidence 787777753
No 39
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=7.4e-12 Score=81.50 Aligned_cols=83 Identities=23% Similarity=0.231 Sum_probs=62.1
Q ss_pred CCCCcEEeccCCcCC-CCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028 4 FVSLYALNLSHNALT-GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l 81 (139)
.++++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.+++++|.+.+.+|... .+.+++.+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 466888888888886 67777777888888888888888754 567777888888888888887666554 37777777
Q ss_pred ccccCCC
Q 046028 82 SYEVNKG 88 (139)
Q Consensus 82 ~~~~n~~ 88 (139)
.+.+|..
T Consensus 101 ~Ls~N~l 107 (168)
T 2ell_A 101 NLSGNKL 107 (168)
T ss_dssp ECBSSSC
T ss_pred eccCCcc
Confidence 7777643
No 40
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.25 E-value=9.4e-12 Score=83.15 Aligned_cols=86 Identities=17% Similarity=0.276 Sum_probs=58.3
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l 81 (139)
..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+.+.++....+++++.+
T Consensus 85 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L 164 (197)
T 4ezg_A 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSL 164 (197)
T ss_dssp TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEE
T ss_pred hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEE
Confidence 45667777777777777666667777777777777777777666777777777777777777632344444456666666
Q ss_pred ccccCC
Q 046028 82 SYEVNK 87 (139)
Q Consensus 82 ~~~~n~ 87 (139)
.+.+|.
T Consensus 165 ~l~~n~ 170 (197)
T 4ezg_A 165 NIQFDG 170 (197)
T ss_dssp ECTTBC
T ss_pred ECCCCC
Confidence 666654
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.24 E-value=3.7e-11 Score=84.02 Aligned_cols=84 Identities=24% Similarity=0.252 Sum_probs=44.2
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l 81 (139)
.+++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+++.++... .+.+++.+
T Consensus 83 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 83 ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEE
Confidence 44555555555555554444445555555555555555554444445555555555555555554444332 34445555
Q ss_pred ccccC
Q 046028 82 SYEVN 86 (139)
Q Consensus 82 ~~~~n 86 (139)
.+.+|
T Consensus 163 ~l~~n 167 (272)
T 3rfs_A 163 DLSYN 167 (272)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55444
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.24 E-value=2.5e-11 Score=85.84 Aligned_cols=86 Identities=23% Similarity=0.198 Sum_probs=55.1
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l 81 (139)
.+++|+.|++++|++++..|..|..+++|+.|++++|+++...+..+..+++|+.+++++|++++.++..+ .+.+++.+
T Consensus 98 ~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177 (290)
T ss_dssp TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEE
Confidence 45666677777777765545566677777777777777765555556666777777777777765554443 45666666
Q ss_pred ccccCCC
Q 046028 82 SYEVNKG 88 (139)
Q Consensus 82 ~~~~n~~ 88 (139)
.+.+|..
T Consensus 178 ~L~~N~l 184 (290)
T 1p9a_G 178 LLQENSL 184 (290)
T ss_dssp ECCSSCC
T ss_pred ECCCCcC
Confidence 6666643
No 43
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=4e-11 Score=78.69 Aligned_cols=85 Identities=22% Similarity=0.234 Sum_probs=73.3
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCcc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTS 82 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l~ 82 (139)
.++++.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.+++++|.+++.++.. ..+.+++.+.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 467999999999999666667899999999999999999766677889999999999999999877765 3678889999
Q ss_pred cccCCC
Q 046028 83 YEVNKG 88 (139)
Q Consensus 83 ~~~n~~ 88 (139)
+.+|..
T Consensus 107 l~~N~l 112 (177)
T 2o6r_A 107 LDTNQL 112 (177)
T ss_dssp CCSSCC
T ss_pred CcCCcc
Confidence 888854
No 44
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.21 E-value=1.8e-11 Score=88.93 Aligned_cols=84 Identities=27% Similarity=0.263 Sum_probs=40.9
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l 81 (139)
.+++|+.|+|++|++++..+..|..+++|+.|++++|+++...+..+..+.+|+.|++++|.+.+..+..+ .+.+|+.+
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 34555555555555554444445555555555555555554333444555555555555555554433322 33444444
Q ss_pred ccccC
Q 046028 82 SYEVN 86 (139)
Q Consensus 82 ~~~~n 86 (139)
.+.+|
T Consensus 142 ~L~~N 146 (361)
T 2xot_A 142 YLSQN 146 (361)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 44443
No 45
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.21 E-value=2.8e-11 Score=79.26 Aligned_cols=70 Identities=24% Similarity=0.276 Sum_probs=62.3
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP 70 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 70 (139)
|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.+++++|.+.+..+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 4578899999999999996666678999999999999999997777779999999999999999986655
No 46
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.21 E-value=1.5e-11 Score=89.34 Aligned_cols=68 Identities=25% Similarity=0.161 Sum_probs=45.9
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI 69 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~ 69 (139)
..+++|+.|+|++|+++...+..|..+++|+.|++++|+++...|..+..+++|+.|++++|.+++.+
T Consensus 85 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 85 VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeC
Confidence 45667777777777777555555677777777777777777555666666777777777777666543
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.20 E-value=8e-12 Score=93.42 Aligned_cols=90 Identities=23% Similarity=0.215 Sum_probs=76.1
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|.+++..+..|..+++|+.|++++|++++..|..+..+++|+.+++++|++++.++..+ .+.+++.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 457788999999999987777778889999999999999998888889999999999999999997666543 5678888
Q ss_pred cccccCCCCCC
Q 046028 81 TSYEVNKGLYG 91 (139)
Q Consensus 81 l~~~~n~~~c~ 91 (139)
+.+.+|++.|.
T Consensus 325 L~l~~N~l~c~ 335 (477)
T 2id5_A 325 LILDSNPLACD 335 (477)
T ss_dssp EECCSSCEECS
T ss_pred EEccCCCccCc
Confidence 88999998875
No 48
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.20 E-value=5.9e-11 Score=82.83 Aligned_cols=86 Identities=24% Similarity=0.259 Sum_probs=51.1
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~ 80 (139)
..+++|++|++++|+++...+..|..+++|+.|++++|++++..+..+..+++|+.+++++|.+.+.++.. ..+.+++.
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 34566667777777666444445566666666666666666555555666666666666666666544432 24455555
Q ss_pred cccccCC
Q 046028 81 TSYEVNK 87 (139)
Q Consensus 81 l~~~~n~ 87 (139)
+.+.+|.
T Consensus 162 L~L~~n~ 168 (270)
T 2o6q_A 162 LRLYNNQ 168 (270)
T ss_dssp EECCSSC
T ss_pred eEecCCc
Confidence 5555543
No 49
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.20 E-value=5e-12 Score=96.89 Aligned_cols=90 Identities=24% Similarity=0.208 Sum_probs=71.4
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l 81 (139)
.+++|+.|++++|++++..|..+..+++|+.|++++|++++..|..+..++.| .+++++|++++.+|... .+.+++.+
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L 552 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTI 552 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEE
T ss_pred cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEE
Confidence 46778888888888887777788888888888888888887788888888888 88888888887766643 56778888
Q ss_pred ccccCCCCCCCC
Q 046028 82 SYEVNKGLYGPP 93 (139)
Q Consensus 82 ~~~~n~~~c~~p 93 (139)
.+.+|++.|..+
T Consensus 553 ~l~~N~~~c~c~ 564 (606)
T 3t6q_A 553 NLRQNPLDCTCS 564 (606)
T ss_dssp ECTTCCEECSGG
T ss_pred eCCCCCccccCC
Confidence 888998888543
No 50
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=1.2e-11 Score=79.03 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=68.6
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCc-chHHhhcCCCCCeEEccCCcccccCC---C-Cccc
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGK-ISAQLASLNFLSVLNLSYNNLVGKIP---T-STQL 75 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~l~l~~N~l~~~~p---~-~~~l 75 (139)
+..+++|+.|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|+.+++++|.+++.++ . ...+
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 139 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC
T ss_pred hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC
Confidence 45788999999999999977888888899999999999999963 34789999999999999999997765 1 2355
Q ss_pred CCCCCccc
Q 046028 76 QSFSPTSY 83 (139)
Q Consensus 76 ~~l~~l~~ 83 (139)
++++.+++
T Consensus 140 ~~L~~L~l 147 (149)
T 2je0_A 140 PQLTYLDG 147 (149)
T ss_dssp TTCCEETT
T ss_pred CCcccccC
Confidence 66665544
No 51
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.20 E-value=2.9e-11 Score=89.65 Aligned_cols=88 Identities=28% Similarity=0.333 Sum_probs=70.8
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..+++|+.+++++|.+++..|... .+.+++.
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 457788888888888887777788888888888888888887777888888888888888888887766554 6778888
Q ss_pred cccccCCCC
Q 046028 81 TSYEVNKGL 89 (139)
Q Consensus 81 l~~~~n~~~ 89 (139)
+.+.+|...
T Consensus 376 L~L~~N~l~ 384 (455)
T 3v47_A 376 LALDTNQLK 384 (455)
T ss_dssp EECCSSCCS
T ss_pred EECCCCccc
Confidence 888777543
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.20 E-value=1.7e-11 Score=95.22 Aligned_cols=91 Identities=22% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCCCCCcEEeccCCcCCCCCc-cccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc--ccCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIP-SSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST--QLQSF 78 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~--~l~~l 78 (139)
..+++|+.|++++|.++ .+| ..|..+++|+.|++++|++++..+..+..+++|+.+++++|++++.++... .+.++
T Consensus 533 ~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L 611 (680)
T 1ziw_A 533 KGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL 611 (680)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred cCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence 45677888888888888 455 457888888888888888886666667788888888888888887666543 46788
Q ss_pred CCcccccCCCCCCCC
Q 046028 79 SPTSYEVNKGLYGPP 93 (139)
Q Consensus 79 ~~l~~~~n~~~c~~p 93 (139)
+.+.+.+|++.|..+
T Consensus 612 ~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 612 TELDMRFNPFDCTCE 626 (680)
T ss_dssp SEEECTTCCCCBCCC
T ss_pred CEEEccCCCcccCCc
Confidence 889999999999765
No 53
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.19 E-value=1.8e-11 Score=96.32 Aligned_cols=84 Identities=27% Similarity=0.250 Sum_probs=49.1
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~ 82 (139)
.+++|+.|+|++|.|+ .+|..+..+++|+.|+|++|+++ .+|..+..+.+|+.|++++|.++..+.....+.+|+.+.
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEE
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEe
Confidence 3455666666666666 55666666666666666666666 556666666666666666666653332333555566666
Q ss_pred cccCCC
Q 046028 83 YEVNKG 88 (139)
Q Consensus 83 ~~~n~~ 88 (139)
+.+|..
T Consensus 323 L~~N~l 328 (727)
T 4b8c_D 323 VEGNPL 328 (727)
T ss_dssp CTTSCC
T ss_pred CCCCcc
Confidence 655554
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.19 E-value=2.2e-11 Score=87.45 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=78.9
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
+.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++++|.+.+.+|... .+.+++.
T Consensus 203 ~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 281 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281 (328)
T ss_dssp GGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCE
T ss_pred cCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCE
Confidence 46788999999999999 577789999999999999999999999999999999999999999888888664 7788889
Q ss_pred cccccCCCCCCCC
Q 046028 81 TSYEVNKGLYGPP 93 (139)
Q Consensus 81 l~~~~n~~~c~~p 93 (139)
+.+.+|+.....|
T Consensus 282 L~L~~n~~~~~iP 294 (328)
T 4fcg_A 282 LDLRGCVNLSRLP 294 (328)
T ss_dssp EECTTCTTCCCCC
T ss_pred EeCCCCCchhhcc
Confidence 9998887665444
No 55
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.18 E-value=2.4e-11 Score=93.29 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=51.7
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccC-CCC-cccCCCCC
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKI-PTS-TQLQSFSP 80 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~-p~~-~~l~~l~~ 80 (139)
.+++|+.|+|++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|+.|++++|.+++.+ |.. ..+.+|+.
T Consensus 461 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~ 537 (567)
T 1dce_A 461 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537 (567)
T ss_dssp GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCE
T ss_pred ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCE
Confidence 4556666666666666 666666666666666666666664 45 5666666666666666666653 333 35566666
Q ss_pred cccccCC
Q 046028 81 TSYEVNK 87 (139)
Q Consensus 81 l~~~~n~ 87 (139)
+.+.+|+
T Consensus 538 L~L~~N~ 544 (567)
T 1dce_A 538 LNLQGNS 544 (567)
T ss_dssp EECTTSG
T ss_pred EEecCCc
Confidence 6666664
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.18 E-value=7.9e-11 Score=82.61 Aligned_cols=86 Identities=24% Similarity=0.244 Sum_probs=53.5
Q ss_pred CCCCCCcEEeccCCc-CCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCC
Q 046028 2 GRFVSLYALNLSHNA-LTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFS 79 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~ 79 (139)
..+++|+.|++++|. ++...|..+..+++|+.|++++|++++..|..+..+++|+.+++++|.+.+.++... .+.+++
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 156 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCcc
Confidence 345667777777775 554445666666777777777777665556666666666777777666665554432 455566
Q ss_pred CcccccCC
Q 046028 80 PTSYEVNK 87 (139)
Q Consensus 80 ~l~~~~n~ 87 (139)
.+.+.+|.
T Consensus 157 ~L~l~~n~ 164 (285)
T 1ozn_A 157 HLFLHGNR 164 (285)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 66655553
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.17 E-value=4.4e-11 Score=91.68 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=48.7
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~ 80 (139)
.++++|+.|++++|.+++..|..|.++++|++|++++|++++..|..+..+++|+++++++|.+.+..+.. ..+.+++.
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 34556666666666666555555666666666666666666555555666666666666666665444332 24455555
Q ss_pred cccccCC
Q 046028 81 TSYEVNK 87 (139)
Q Consensus 81 l~~~~n~ 87 (139)
+.+.+|.
T Consensus 133 L~L~~n~ 139 (606)
T 3vq2_A 133 LNVAHNF 139 (606)
T ss_dssp EECCSSC
T ss_pred EeCCCCc
Confidence 5555543
No 58
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.17 E-value=4.9e-11 Score=79.66 Aligned_cols=84 Identities=24% Similarity=0.329 Sum_probs=72.7
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeecccccc-CCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCC
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNN-LSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS 79 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~ 79 (139)
+..+++|+.|++++|.+++..|..+..+++|+.|++++|+ ++ .+| .+..+++|+.+++++|.+++. +....+++++
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~~l~~l~~L~ 184 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-RGIEDFPKLN 184 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-TTGGGCSSCC
T ss_pred hcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-HHhccCCCCC
Confidence 4578999999999999998888999999999999999998 66 666 689999999999999999864 4555788899
Q ss_pred CcccccCC
Q 046028 80 PTSYEVNK 87 (139)
Q Consensus 80 ~l~~~~n~ 87 (139)
.+.+.+|+
T Consensus 185 ~L~l~~N~ 192 (197)
T 4ezg_A 185 QLYAFSQT 192 (197)
T ss_dssp EEEECBC-
T ss_pred EEEeeCcc
Confidence 99988886
No 59
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=7.7e-11 Score=77.49 Aligned_cols=70 Identities=24% Similarity=0.301 Sum_probs=60.9
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP 70 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 70 (139)
|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+..+++|+.+++++|.+....+
T Consensus 53 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 4578999999999999996555567999999999999999996666669999999999999999986554
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.15 E-value=5.2e-11 Score=84.77 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=62.2
Q ss_pred CCCCCcEEeccCCcCCCCCcccc--CCCcccCeeccccccCCCcchHHhhcC-----CCCCeEEccCCcccccCCCCc-c
Q 046028 3 RFVSLYALNLSHNALTGSIPSSF--GNLKHIESLDLSTNNLSGKISAQLASL-----NFLSVLNLSYNNLVGKIPTST-Q 74 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~--~~l~~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~l~l~~N~l~~~~p~~~-~ 74 (139)
.+++|++|++++|.+++..|..+ ..+++|++|++++|++++. |..+..+ ++|+.+++++|++.+.++... .
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 46778888888888887777765 7788888888888888765 6666665 778888888888877665443 6
Q ss_pred cCCCCCcccccCC
Q 046028 75 LQSFSPTSYEVNK 87 (139)
Q Consensus 75 l~~l~~l~~~~n~ 87 (139)
+.+++.+.+.+|.
T Consensus 172 l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 172 FPALSTLDLSDNP 184 (312)
T ss_dssp CSSCCEEECCSCT
T ss_pred CCCCCEEECCCCC
Confidence 6677777776665
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.14 E-value=8e-11 Score=82.23 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=26.0
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.+++++|.+.
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 113 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc
Confidence 334444444444444333333444444444444444444333333444444444444444443
No 62
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.14 E-value=9.2e-11 Score=88.86 Aligned_cols=87 Identities=24% Similarity=0.219 Sum_probs=63.9
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccccc-C-CCCcccCCC
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK-I-PTSTQLQSF 78 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~-~-p~~~~l~~l 78 (139)
|.++++|++|++++|++++..|..|..+++|++|++++|++++..|..+..+++|+++++++|.+++. . +....+.++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 34677788888888888866667788888888888888888877777788888888888888888742 2 233456667
Q ss_pred CCcccccCC
Q 046028 79 SPTSYEVNK 87 (139)
Q Consensus 79 ~~l~~~~n~ 87 (139)
+.+.+.+|.
T Consensus 126 ~~L~L~~n~ 134 (549)
T 2z81_A 126 QTLRIGNVE 134 (549)
T ss_dssp CEEEEEESS
T ss_pred cEEECCCCc
Confidence 777766665
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.14 E-value=1e-10 Score=84.46 Aligned_cols=86 Identities=30% Similarity=0.255 Sum_probs=63.7
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC-C-CcccCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP-T-STQLQSFS 79 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p-~-~~~l~~l~ 79 (139)
.++++|+.|++++|.+++..|..|..+++|++|++++|+++...+..+..+++|+.+++++|.+++.++ . ...+.+++
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152 (353)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCc
Confidence 457778888888888886666778888888888888888885555557788888888888888875544 2 23567777
Q ss_pred CcccccCC
Q 046028 80 PTSYEVNK 87 (139)
Q Consensus 80 ~l~~~~n~ 87 (139)
.+.+.+|.
T Consensus 153 ~L~l~~n~ 160 (353)
T 2z80_A 153 ILRVGNMD 160 (353)
T ss_dssp EEEEEESS
T ss_pred EEECCCCc
Confidence 77777664
No 64
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.13 E-value=1.3e-10 Score=88.70 Aligned_cols=63 Identities=22% Similarity=0.170 Sum_probs=47.4
Q ss_pred cccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCC-CcccCCCCCcccccCCCCCCC
Q 046028 29 KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSYEVNKGLYGP 92 (139)
Q Consensus 29 ~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~l~~l~~l~~~~n~~~c~~ 92 (139)
++|+.|++++|+++ .+|..+..+++|+.+++++|+++..++. ...+.+++.+.+.+|++.|..
T Consensus 450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 56777777777777 5666666888888888888888855544 346778888888899888853
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.13 E-value=9e-11 Score=87.38 Aligned_cols=65 Identities=25% Similarity=0.249 Sum_probs=30.0
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG 67 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 67 (139)
++++|+.|+|++|.+++..|..|.++++|+.|++++|+++...+..+..+++|+.|++++|.+..
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 34444444444444444444444444444444444444443333334444444444444444443
No 66
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.13 E-value=1.9e-10 Score=83.92 Aligned_cols=85 Identities=22% Similarity=0.199 Sum_probs=43.4
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l 81 (139)
.+++|+.|++++|.+++..|..+..+++|++|++++|+++...+..+..+++|+.+++++|.+.+..+... .+.+++.+
T Consensus 91 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence 44555555555555554444445555555555555555553222234555555555555555554444322 34455555
Q ss_pred ccccCC
Q 046028 82 SYEVNK 87 (139)
Q Consensus 82 ~~~~n~ 87 (139)
.+.+|.
T Consensus 171 ~l~~n~ 176 (390)
T 3o6n_A 171 QLSSNR 176 (390)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 554443
No 67
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.12 E-value=6.2e-11 Score=90.84 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=40.4
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l 81 (139)
++++|++|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+.+++++|.+++..+.. ..+.+++.+
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence 4445555555555555444455555555555555555555444444555555555555555554432222 233444444
Q ss_pred ccccC
Q 046028 82 SYEVN 86 (139)
Q Consensus 82 ~~~~n 86 (139)
.+.+|
T Consensus 135 ~L~~n 139 (606)
T 3t6q_A 135 YLGSN 139 (606)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 44444
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.12 E-value=1.7e-10 Score=88.81 Aligned_cols=86 Identities=22% Similarity=0.198 Sum_probs=46.5
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|+|++|.+++..|..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.+.+|..+ .+.+++.
T Consensus 96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 175 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcE
Confidence 345555566666666555444555556666666666666553333334555566666666666655554332 4455555
Q ss_pred cccccCC
Q 046028 81 TSYEVNK 87 (139)
Q Consensus 81 l~~~~n~ 87 (139)
+.+.+|.
T Consensus 176 L~L~~N~ 182 (597)
T 3oja_B 176 LQLSSNR 182 (597)
T ss_dssp EECTTSC
T ss_pred EECcCCC
Confidence 5555443
No 69
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.12 E-value=8.6e-11 Score=87.82 Aligned_cols=84 Identities=25% Similarity=0.296 Sum_probs=38.8
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l 81 (139)
++++|++|+|++|.+++..|..|.++++|++|++++|+++...+..+..+++|+.|++++|.+.+.++..+ .+.+++.+
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 34455555555555554444445555555555555555543333334444555555555555444433322 33334444
Q ss_pred ccccC
Q 046028 82 SYEVN 86 (139)
Q Consensus 82 ~~~~n 86 (139)
.+.+|
T Consensus 134 ~l~~n 138 (477)
T 2id5_A 134 EVGDN 138 (477)
T ss_dssp EECCT
T ss_pred ECCCC
Confidence 44333
No 70
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=4.3e-11 Score=78.56 Aligned_cols=83 Identities=20% Similarity=0.149 Sum_probs=65.2
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC--CCcccCCCCCcc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSPTS 82 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p--~~~~l~~l~~l~ 82 (139)
++|+.|++++|.+++. ..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+...++ ....+.+++.+.
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 3789999999999854 678889999999999999985544556888999999999999975443 334677788888
Q ss_pred cccCCCC
Q 046028 83 YEVNKGL 89 (139)
Q Consensus 83 ~~~n~~~ 89 (139)
+.+|+..
T Consensus 120 l~~N~i~ 126 (176)
T 1a9n_A 120 ILRNPVT 126 (176)
T ss_dssp CCSSGGG
T ss_pred ecCCCCC
Confidence 8888653
No 71
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=86.28 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=44.8
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
.++++|+.|+|++|.++...+..|.++++|+.|++++|+++...+..+..+++|+.|++++|.+...++..+ .+.+++.
T Consensus 85 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164 (440)
T ss_dssp SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence 345556666666666654444555566666666666666654444455555666666666666554443222 3344444
Q ss_pred ccccc
Q 046028 81 TSYEV 85 (139)
Q Consensus 81 l~~~~ 85 (139)
+.+.+
T Consensus 165 L~l~~ 169 (440)
T 3zyj_A 165 LDLGE 169 (440)
T ss_dssp EECCC
T ss_pred eCCCC
Confidence 44433
No 72
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.11 E-value=9e-11 Score=83.04 Aligned_cols=85 Identities=24% Similarity=0.301 Sum_probs=47.1
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCC-cchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG-KISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~-~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++ ..|..+..+++|+.+++++|.+++..|... .+.+++.
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 203 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCE
Confidence 45556666666666655555555556666666666665553 345555555566666666666555544332 3445555
Q ss_pred cccccCC
Q 046028 81 TSYEVNK 87 (139)
Q Consensus 81 l~~~~n~ 87 (139)
+.+.+|.
T Consensus 204 L~L~~N~ 210 (306)
T 2z66_A 204 LNMSHNN 210 (306)
T ss_dssp EECTTSC
T ss_pred EECCCCc
Confidence 5555543
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.11 E-value=2e-10 Score=86.59 Aligned_cols=85 Identities=29% Similarity=0.292 Sum_probs=54.3
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCC-CcccCCCCCccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSY 83 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~l~~l~~l~~ 83 (139)
++|+.|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|+.+++++|+++..++. ...+.+++.+.+
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEEC
Confidence 3444444444444433333332 56677777777777 6676666788888888888888854444 335677788888
Q ss_pred ccCCCCCCC
Q 046028 84 EVNKGLYGP 92 (139)
Q Consensus 84 ~~n~~~c~~ 92 (139)
.+|+..|..
T Consensus 476 ~~N~~~c~c 484 (520)
T 2z7x_B 476 HTNPWDCSC 484 (520)
T ss_dssp CSSCBCCCH
T ss_pred cCCCCcccC
Confidence 888887753
No 74
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.10 E-value=5.5e-11 Score=78.05 Aligned_cols=82 Identities=17% Similarity=0.169 Sum_probs=60.4
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCC-cccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCC
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNL-KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~ 80 (139)
.+.+|+.|++++|.++ .+|. +..+ ++|+.|++++|.+++. ..+..+++|+.+++++|.+++.++.. ..+.+++.
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4567888888888888 4554 4444 4888888888888843 56777888888888888888765554 46777788
Q ss_pred cccccCCC
Q 046028 81 TSYEVNKG 88 (139)
Q Consensus 81 l~~~~n~~ 88 (139)
+.+.+|..
T Consensus 93 L~L~~N~i 100 (176)
T 1a9n_A 93 LILTNNSL 100 (176)
T ss_dssp EECCSCCC
T ss_pred EECCCCcC
Confidence 87777754
No 75
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.10 E-value=1.9e-10 Score=82.36 Aligned_cols=86 Identities=20% Similarity=0.151 Sum_probs=69.2
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE 84 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~ 84 (139)
++|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|+.+++++|.++..+.....+.+++.+.+.
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECC
Confidence 57888999999998777788888899999999999998777778888889999999999888544444577788888888
Q ss_pred cCCCCC
Q 046028 85 VNKGLY 90 (139)
Q Consensus 85 ~n~~~c 90 (139)
+|....
T Consensus 273 ~N~l~~ 278 (332)
T 2ft3_A 273 TNNITK 278 (332)
T ss_dssp SSCCCB
T ss_pred CCCCCc
Confidence 776543
No 76
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.10 E-value=1.9e-10 Score=89.17 Aligned_cols=82 Identities=22% Similarity=0.250 Sum_probs=50.8
Q ss_pred CCCcEEeccCCcCCCCCccccC--CCcccCeeccccccCCCcchHHhhcCCCCCeEEc------cCCcccccCCCCc-cc
Q 046028 5 VSLYALNLSHNALTGSIPSSFG--NLKHIESLDLSTNNLSGKISAQLASLNFLSVLNL------SYNNLVGKIPTST-QL 75 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l------~~N~l~~~~p~~~-~l 75 (139)
++|+.|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.+++ ++|++.+.+|... .+
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence 36666666666666 5666655 66666666666666664 6666666666666666 3455555555443 45
Q ss_pred CCCCCcccccCCC
Q 046028 76 QSFSPTSYEVNKG 88 (139)
Q Consensus 76 ~~l~~l~~~~n~~ 88 (139)
.+++.+.+.+|..
T Consensus 566 ~~L~~L~Ls~N~l 578 (636)
T 4eco_A 566 PSLTQLQIGSNDI 578 (636)
T ss_dssp SSCCEEECCSSCC
T ss_pred CCCCEEECCCCcC
Confidence 5666666666554
No 77
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.09 E-value=1.8e-10 Score=82.29 Aligned_cols=85 Identities=26% Similarity=0.206 Sum_probs=71.2
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE 84 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~ 84 (139)
++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++|+.+++++|.+...+.....+.+++.+.+.
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 67899999999999777888999999999999999999777778888999999999999998554444577788888888
Q ss_pred cCCCC
Q 046028 85 VNKGL 89 (139)
Q Consensus 85 ~n~~~ 89 (139)
+|..-
T Consensus 272 ~N~i~ 276 (330)
T 1xku_A 272 NNNIS 276 (330)
T ss_dssp SSCCC
T ss_pred CCcCC
Confidence 87643
No 78
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=1.9e-10 Score=90.54 Aligned_cols=84 Identities=24% Similarity=0.233 Sum_probs=74.2
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~ 80 (139)
..+.+|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..+.+|+.|++++|.++. +|.. ..+.+|+.
T Consensus 221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCE
Confidence 45788999999999999 88888889999999999999999 899999999999999999999994 4554 47888999
Q ss_pred cccccCCC
Q 046028 81 TSYEVNKG 88 (139)
Q Consensus 81 l~~~~n~~ 88 (139)
+.+.+|..
T Consensus 298 L~L~~N~l 305 (727)
T 4b8c_D 298 FYFFDNMV 305 (727)
T ss_dssp EECCSSCC
T ss_pred EECCCCCC
Confidence 99988854
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.07 E-value=1.8e-10 Score=80.46 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=42.2
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccccc-CCCC-cccCCCCC
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK-IPTS-TQLQSFSP 80 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~-~p~~-~~l~~l~~ 80 (139)
.+++|+.|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|+.+++++|.+.+. +|.. ..+.+++.
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~ 153 (276)
T 2z62_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (276)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCE
Confidence 455566666666666544445555555555555555555544333455555555555555555432 2222 23344444
Q ss_pred cccccC
Q 046028 81 TSYEVN 86 (139)
Q Consensus 81 l~~~~n 86 (139)
+.+.+|
T Consensus 154 L~Ls~N 159 (276)
T 2z62_A 154 LDLSSN 159 (276)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 444444
No 80
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.06 E-value=1.1e-10 Score=90.60 Aligned_cols=85 Identities=15% Similarity=0.322 Sum_probs=65.9
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeecccccc-CCC-cchHHhhcC------CCCCeEEccCCcccccCCC---
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNN-LSG-KISAQLASL------NFLSVLNLSYNNLVGKIPT--- 71 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~l------~~L~~l~l~~N~l~~~~p~--- 71 (139)
++++|+.|++++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..+..+ ++|+.+++++|.++ .+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 68889999999999888999889999999999999998 887 788777665 77788888888777 4554
Q ss_pred CcccCCCCCcccccCCC
Q 046028 72 STQLQSFSPTSYEVNKG 88 (139)
Q Consensus 72 ~~~l~~l~~l~~~~n~~ 88 (139)
...+.+++.+.+.+|..
T Consensus 326 l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQL 342 (636)
T ss_dssp HTTCTTCCEEECCSCCC
T ss_pred hccCCCCCEEeCcCCcC
Confidence 33556666666655543
No 81
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.05 E-value=1.6e-10 Score=84.39 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=74.1
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l 81 (139)
.+++|+.|++++|.++...+..|..+++|++|++++|++++..|..+..+++|+.+++++|.++..++.. ..+.+++.+
T Consensus 67 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 67 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 146 (390)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEE
Confidence 4688999999999999776778999999999999999999887888899999999999999999666554 467888888
Q ss_pred ccccCCCC
Q 046028 82 SYEVNKGL 89 (139)
Q Consensus 82 ~~~~n~~~ 89 (139)
.+.+|...
T Consensus 147 ~L~~n~l~ 154 (390)
T 3o6n_A 147 SMSNNNLE 154 (390)
T ss_dssp ECCSSCCC
T ss_pred ECCCCccC
Confidence 88887543
No 82
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.05 E-value=2.9e-10 Score=86.34 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=47.5
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCC-CcccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~l~~l~~ 80 (139)
..+++|+.|++++|++++..|..|..+++|++|++++|+++...|..+..+.+|+.+++++|.+++..+. ...+.+++.
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence 3455666666666666644455566666666666666666544445555566666666666655544332 224445555
Q ss_pred cccccCC
Q 046028 81 TSYEVNK 87 (139)
Q Consensus 81 l~~~~n~ 87 (139)
+.+.+|.
T Consensus 129 L~L~~n~ 135 (570)
T 2z63_A 129 LNVAHNL 135 (570)
T ss_dssp EECCSSC
T ss_pred EecCCCc
Confidence 5554443
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.04 E-value=2.2e-10 Score=86.35 Aligned_cols=81 Identities=21% Similarity=0.135 Sum_probs=48.8
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE 84 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~ 84 (139)
++++.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+++++++|+++.. |.. .+.+++.+.+.
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~-~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI-SCH-PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEE-ECC-CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeec-Ccc-ccCCccEEecc
Confidence 4566666666666655555666666666666666666655566666666666666666666633 322 45555555555
Q ss_pred cCC
Q 046028 85 VNK 87 (139)
Q Consensus 85 ~n~ 87 (139)
+|.
T Consensus 99 ~N~ 101 (520)
T 2z7x_B 99 FNA 101 (520)
T ss_dssp SSC
T ss_pred CCc
Confidence 554
No 84
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.04 E-value=4.1e-10 Score=80.61 Aligned_cols=87 Identities=28% Similarity=0.294 Sum_probs=59.8
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcc-------
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQ------- 74 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~------- 74 (139)
..+++|+.|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.+++..+..+.
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence 45667777777777777666667777777777777777777 6777777777777777777777765544331
Q ss_pred cCCCCCcccccCCCC
Q 046028 75 LQSFSPTSYEVNKGL 89 (139)
Q Consensus 75 l~~l~~l~~~~n~~~ 89 (139)
...+..+.+.+|+..
T Consensus 293 ~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 293 RAYYNGISLFNNPVP 307 (332)
T ss_dssp SCCBSEEECCSSSSC
T ss_pred cccccceEeecCccc
Confidence 234455666677654
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.04 E-value=2.4e-10 Score=91.05 Aligned_cols=86 Identities=23% Similarity=0.275 Sum_probs=54.9
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHH--hhcCCCCCeEEccCCcccccCCC--CcccCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQ--LASLNFLSVLNLSYNNLVGKIPT--STQLQS 77 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~--~~~l~~L~~l~l~~N~l~~~~p~--~~~l~~ 77 (139)
.++++|+.|+|++|.+++..|..|.++++|++|++++|.+++..|.. +..+++|+.|++++|.+.+..+. ...+.+
T Consensus 70 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~ 149 (844)
T 3j0a_A 70 RNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149 (844)
T ss_dssp SSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSS
T ss_pred cCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCC
Confidence 45666777777777777666667777777777777777776555543 66667777777777777655442 234555
Q ss_pred CCCcccccCC
Q 046028 78 FSPTSYEVNK 87 (139)
Q Consensus 78 l~~l~~~~n~ 87 (139)
|+.+.+.+|.
T Consensus 150 L~~L~Ls~N~ 159 (844)
T 3j0a_A 150 LKSIDFSSNQ 159 (844)
T ss_dssp CCEEEEESSC
T ss_pred CCEEECCCCc
Confidence 6666555553
No 86
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.04 E-value=4e-10 Score=80.56 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=65.2
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSP 80 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~ 80 (139)
..+++|+.|++++|.++ .+|..+. ++|+.|++++|++++..|..+..+++|+.+++++|.+++..+... .+.+++.
T Consensus 168 ~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 244 (330)
T 1xku_A 168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244 (330)
T ss_dssp GGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred cCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCE
Confidence 34678888888888888 5665543 788888888888887777888888888888888888887766443 6677888
Q ss_pred cccccCCCC
Q 046028 81 TSYEVNKGL 89 (139)
Q Consensus 81 l~~~~n~~~ 89 (139)
+.+.+|...
T Consensus 245 L~L~~N~l~ 253 (330)
T 1xku_A 245 LHLNNNKLV 253 (330)
T ss_dssp EECCSSCCS
T ss_pred EECCCCcCc
Confidence 888777543
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.04 E-value=3.5e-10 Score=80.36 Aligned_cols=84 Identities=21% Similarity=0.278 Sum_probs=57.4
Q ss_pred CCCCCCcEEeccCCcCCCCCcc----ccCCCcccCeeccccccCCCcchHHhhcC---CCCCeEEccCCcccccCCCCcc
Q 046028 2 GRFVSLYALNLSHNALTGSIPS----SFGNLKHIESLDLSTNNLSGKISAQLASL---NFLSVLNLSYNNLVGKIPTSTQ 74 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~----~~~~l~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~l~l~~N~l~~~~p~~~~ 74 (139)
..+++|++|++++|+++ .++. .+..+++|++|++++|++++..|..+..+ ++|+.+++++|+++. +|....
T Consensus 194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~ 271 (310)
T 4glp_A 194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP 271 (310)
T ss_dssp TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC
T ss_pred hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc
Confidence 35677888888888876 4443 24567788888888888887667666665 578888888888873 444332
Q ss_pred cCCCCCcccccCCC
Q 046028 75 LQSFSPTSYEVNKG 88 (139)
Q Consensus 75 l~~l~~l~~~~n~~ 88 (139)
.+++.+.+.+|..
T Consensus 272 -~~L~~L~Ls~N~l 284 (310)
T 4glp_A 272 -AKLRVLDLSSNRL 284 (310)
T ss_dssp -SCCSCEECCSCCC
T ss_pred -CCCCEEECCCCcC
Confidence 5677777776654
No 88
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.03 E-value=5.1e-10 Score=80.32 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=46.5
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l 81 (139)
.+++|+.|++++|.++. + +.+..+++|+.|++++|+++.. ..+..+++|+.+++++|.+.+..+... .+.+++.+
T Consensus 241 ~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp TCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred cCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 45566666666666653 2 3455666666666666666532 235556666666666666655444332 45555556
Q ss_pred ccccCCC
Q 046028 82 SYEVNKG 88 (139)
Q Consensus 82 ~~~~n~~ 88 (139)
.+.+|+.
T Consensus 317 ~L~~n~l 323 (347)
T 4fmz_A 317 FLSQNHI 323 (347)
T ss_dssp ECCSSSC
T ss_pred EccCCcc
Confidence 6655543
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.03 E-value=8.9e-11 Score=83.56 Aligned_cols=65 Identities=22% Similarity=0.196 Sum_probs=37.3
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCC-----cccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccc
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNL-----KHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG 67 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 67 (139)
..+++|+.|++++|++++. |..+..+ ++|++|++++|++++..|..+..+++|+.+++++|++.+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc
Confidence 3455666666666666644 5545444 556666666666655555555556666666666665443
No 90
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.03 E-value=2.9e-10 Score=87.47 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=76.5
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPT 81 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l 81 (139)
.+++|+.|++++|.+++..|..|..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.++.. ..+.+++.+
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 4688999999999999777789999999999999999999888888899999999999999999777665 478888999
Q ss_pred ccccCCCC
Q 046028 82 SYEVNKGL 89 (139)
Q Consensus 82 ~~~~n~~~ 89 (139)
.+.+|...
T Consensus 153 ~Ls~N~l~ 160 (597)
T 3oja_B 153 SMSNNNLE 160 (597)
T ss_dssp ECCSSCCC
T ss_pred EeeCCcCC
Confidence 88888643
No 91
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.03 E-value=3.7e-10 Score=86.09 Aligned_cols=82 Identities=21% Similarity=0.138 Sum_probs=56.8
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE 84 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~ 84 (139)
++++.|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|++|++++|.++.. |.. .+.+++.+.+.
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~-~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI-SCC-PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE-CSC-CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc-Ccc-ccccCCEEECC
Confidence 4577777777777766666777777777777777777766677777777777777777777743 333 56666666666
Q ss_pred cCCC
Q 046028 85 VNKG 88 (139)
Q Consensus 85 ~n~~ 88 (139)
+|..
T Consensus 130 ~N~l 133 (562)
T 3a79_B 130 FNDF 133 (562)
T ss_dssp SSCC
T ss_pred CCCc
Confidence 6653
No 92
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.03 E-value=4.4e-10 Score=86.28 Aligned_cols=69 Identities=29% Similarity=0.294 Sum_probs=63.3
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcc-hHHhhcCCCCCeEEccCCcccccCCCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKI-SAQLASLNFLSVLNLSYNNLVGKIPTS 72 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~l~l~~N~l~~~~p~~ 72 (139)
+.+++|+.|+|++|.+++ +| .+..+++|+.|++++|++++.. |..+..+++|+.+++++|.+++.+|..
T Consensus 483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 568899999999999995 77 8999999999999999999776 999999999999999999999887754
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.02 E-value=1.6e-10 Score=79.10 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=44.0
Q ss_pred CCCCCcEEeccCCc-CCCCCccccCCCcccCeecccc-ccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCC-
Q 046028 3 RFVSLYALNLSHNA-LTGSIPSSFGNLKHIESLDLST-NNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFS- 79 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~- 79 (139)
.+++|+.|++++|+ ++...+..|..+++|++|++++ |+++...+..+..+++|+.+++++|.+++ +|....+.+++
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~~~~l~~L~~ 131 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDI 131 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCCCTTCCBCCS
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-cccccccccccc
Confidence 45556666666664 5533334555666666666665 66654444455556666666666665554 33333333443
Q ss_pred --CcccccC
Q 046028 80 --PTSYEVN 86 (139)
Q Consensus 80 --~l~~~~n 86 (139)
.+.+.+|
T Consensus 132 L~~L~l~~N 140 (239)
T 2xwt_C 132 FFILEITDN 140 (239)
T ss_dssp EEEEEEESC
T ss_pred ccEEECCCC
Confidence 4444444
No 94
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.01 E-value=4.2e-10 Score=87.35 Aligned_cols=81 Identities=26% Similarity=0.299 Sum_probs=36.5
Q ss_pred CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC-cccCCCCCcccc
Q 046028 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS-TQLQSFSPTSYE 84 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~-~~l~~l~~l~~~ 84 (139)
+++.|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|+.+++++|.+++.++.. ..+.+++.+.+.
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 3444555555554333334444445555555555444444444444444444444444444333321 233444444443
Q ss_pred cC
Q 046028 85 VN 86 (139)
Q Consensus 85 ~n 86 (139)
+|
T Consensus 106 ~n 107 (680)
T 1ziw_A 106 SN 107 (680)
T ss_dssp SS
T ss_pred CC
Confidence 33
No 95
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.01 E-value=1.7e-10 Score=87.40 Aligned_cols=85 Identities=21% Similarity=0.146 Sum_probs=76.3
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCC-CcccCCCCCccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSY 83 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~l~~l~~l~~ 83 (139)
+++++|++++|.+++..|..|..+++|++|++++|++++..|..+..+++|+++++++|.+++.++. ...+.+++.+.+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 5799999999999988888999999999999999999988888999999999999999999988776 347888999999
Q ss_pred ccCCCC
Q 046028 84 EVNKGL 89 (139)
Q Consensus 84 ~~n~~~ 89 (139)
.+|...
T Consensus 106 s~n~l~ 111 (549)
T 2z81_A 106 MGNPYQ 111 (549)
T ss_dssp TTCCCS
T ss_pred CCCccc
Confidence 888643
No 96
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.00 E-value=4.3e-10 Score=80.19 Aligned_cols=85 Identities=22% Similarity=0.145 Sum_probs=61.1
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (139)
+++|+.|++++|.+++. +. ...+++|+.|++++|+++ .+|..+..+++|+.+++++|.++..++....+.+++.+.+
T Consensus 168 l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (317)
T ss_dssp TTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred cCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEc
Confidence 56677777777777633 32 234777888888888888 4455578888888888888888865544456778888888
Q ss_pred ccCCCCCC
Q 046028 84 EVNKGLYG 91 (139)
Q Consensus 84 ~~n~~~c~ 91 (139)
.+|+..|+
T Consensus 245 ~~N~~~~~ 252 (317)
T 3o53_A 245 RGNGFHCG 252 (317)
T ss_dssp TTCCCBHH
T ss_pred cCCCccCc
Confidence 88888764
No 97
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.00 E-value=3.1e-10 Score=85.51 Aligned_cols=85 Identities=22% Similarity=0.137 Sum_probs=56.9
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (139)
+++|+.|+|++|.+++. |. ...+++|+.|++++|.+++ +|..+..+++|+.+++++|.+++.++....+.++..+.+
T Consensus 168 l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDL 244 (487)
T ss_dssp TTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEEC
T ss_pred CCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEc
Confidence 45555566666655533 21 2346777777777777774 444477778888888888888865555456677788888
Q ss_pred ccCCCCCC
Q 046028 84 EVNKGLYG 91 (139)
Q Consensus 84 ~~n~~~c~ 91 (139)
.+|+..|+
T Consensus 245 ~~N~l~c~ 252 (487)
T 3oja_A 245 RGNGFHCG 252 (487)
T ss_dssp TTCCBCHH
T ss_pred CCCCCcCc
Confidence 88888764
No 98
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.99 E-value=2.7e-10 Score=91.30 Aligned_cols=85 Identities=20% Similarity=0.338 Sum_probs=68.4
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeecccccc-CCC-cchHHhhcCC-------CCCeEEccCCcccccCCC--
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNN-LSG-KISAQLASLN-------FLSVLNLSYNNLVGKIPT-- 71 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~-l~~-~~p~~~~~l~-------~L~~l~l~~N~l~~~~p~-- 71 (139)
++++|+.|+|++|.+.+.+|..+.++++|+.|++++|+ +++ .+|..+..+. +|+.|++++|.+. .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 78899999999999998999999999999999999998 887 7887777665 8888888888888 5555
Q ss_pred -CcccCCCCCcccccCCC
Q 046028 72 -STQLQSFSPTSYEVNKG 88 (139)
Q Consensus 72 -~~~l~~l~~l~~~~n~~ 88 (139)
...+.+++.+.+.+|..
T Consensus 568 ~l~~L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKV 585 (876)
T ss_dssp HHTTCTTCCEEECTTSCC
T ss_pred hhhcCCCCCEEECCCCCc
Confidence 34566677776666653
No 99
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.96 E-value=1.6e-09 Score=86.89 Aligned_cols=83 Identities=23% Similarity=0.280 Sum_probs=67.3
Q ss_pred CCCCcEEeccCCcCCCCCccccC--CCcccCeeccccccCCCcchHHhhcCCCCCeEEccC------CcccccCCCCc-c
Q 046028 4 FVSLYALNLSHNALTGSIPSSFG--NLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY------NNLVGKIPTST-Q 74 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~------N~l~~~~p~~~-~ 74 (139)
+++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++ |.+.+.+|... .
T Consensus 727 l~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~ 804 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804 (876)
T ss_dssp GGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG
T ss_pred cCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhc
Confidence 448888999999888 7888876 88889999999998885 787888888899988866 77777777654 6
Q ss_pred cCCCCCcccccCCC
Q 046028 75 LQSFSPTSYEVNKG 88 (139)
Q Consensus 75 l~~l~~l~~~~n~~ 88 (139)
+.+|+.+.+.+|..
T Consensus 805 L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 805 CPSLIQLQIGSNDI 818 (876)
T ss_dssp CSSCCEEECCSSCC
T ss_pred CCCCCEEECCCCCC
Confidence 77888888888765
No 100
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=9.8e-10 Score=79.01 Aligned_cols=80 Identities=18% Similarity=0.130 Sum_probs=70.5
Q ss_pred cEEeccCC-cCCCCCccccCCCcccCeecccc-ccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCCCCcccc
Q 046028 8 YALNLSHN-ALTGSIPSSFGNLKHIESLDLST-NNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSFSPTSYE 84 (139)
Q Consensus 8 ~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l~~l~~~ 84 (139)
..++.+++ .++ .+|. +..+++|+.|+|++ |++++..+..|..+.+|+.|+|++|++++.+|..+ .+.+|+.+.+.
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45789998 898 6888 99999999999996 99998777899999999999999999999888764 78899999998
Q ss_pred cCCCC
Q 046028 85 VNKGL 89 (139)
Q Consensus 85 ~n~~~ 89 (139)
+|...
T Consensus 89 ~N~l~ 93 (347)
T 2ifg_A 89 FNALE 93 (347)
T ss_dssp SSCCS
T ss_pred CCccc
Confidence 88643
No 101
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.96 E-value=3.8e-10 Score=81.38 Aligned_cols=85 Identities=25% Similarity=0.230 Sum_probs=73.2
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCC-CcccCCCCCccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPT-STQLQSFSPTSY 83 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~-~~~l~~l~~l~~ 83 (139)
++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|+.+++++|.+++.++. ...+.+++.+.+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 5799999999999966666899999999999999999987788899999999999999999976554 346788888988
Q ss_pred ccCCCC
Q 046028 84 EVNKGL 89 (139)
Q Consensus 84 ~~n~~~ 89 (139)
.+|...
T Consensus 132 ~~n~l~ 137 (353)
T 2z80_A 132 LGNPYK 137 (353)
T ss_dssp TTCCCS
T ss_pred CCCCCc
Confidence 888543
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.93 E-value=2.3e-09 Score=75.66 Aligned_cols=78 Identities=27% Similarity=0.393 Sum_probs=31.7
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (139)
+++|+.|++++|++++ + ..+..+++|+.|++++|++++. ..+..+++|+.+++++|.+++..+ ...+.+++.+.+
T Consensus 111 l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L 185 (291)
T 1h6t_A 111 LKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYL 185 (291)
T ss_dssp CTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEEC
Confidence 3344444444444442 1 2333444444444444444422 234444444444444444443332 223334444444
Q ss_pred ccC
Q 046028 84 EVN 86 (139)
Q Consensus 84 ~~n 86 (139)
.+|
T Consensus 186 ~~N 188 (291)
T 1h6t_A 186 SKN 188 (291)
T ss_dssp CSS
T ss_pred CCC
Confidence 333
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.93 E-value=1.8e-09 Score=76.70 Aligned_cols=81 Identities=19% Similarity=0.109 Sum_probs=38.0
Q ss_pred CCcEEeccCCcCCCCCcccc--CCCcccCeeccccccCCCcch----HHhhcCCCCCeEEccCCcccccCCCCc-ccCCC
Q 046028 6 SLYALNLSHNALTGSIPSSF--GNLKHIESLDLSTNNLSGKIS----AQLASLNFLSVLNLSYNNLVGKIPTST-QLQSF 78 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~~p~~~--~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l 78 (139)
+|++|++++|.+++..|..+ ..+++|+.|++++|++++..+ ..+..+++|+.+++++|.+.+.++... .+.++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 35555555555555555544 455555555555555543322 222334455555555555544443322 34444
Q ss_pred CCcccccC
Q 046028 79 SPTSYEVN 86 (139)
Q Consensus 79 ~~l~~~~n 86 (139)
+.+.+.+|
T Consensus 172 ~~L~Ls~N 179 (310)
T 4glp_A 172 TSLDLSDN 179 (310)
T ss_dssp CEEECCSC
T ss_pred CEEECCCC
Confidence 44444444
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.92 E-value=1.1e-09 Score=82.58 Aligned_cols=83 Identities=24% Similarity=0.189 Sum_probs=55.2
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhh-cCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLA-SLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~ 82 (139)
+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.++ ...+.++..+.
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~ 197 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLD 197 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEE
Confidence 45677777777777766677777778888888888888776776665 56677777777776665432 22345555555
Q ss_pred cccCC
Q 046028 83 YEVNK 87 (139)
Q Consensus 83 ~~~n~ 87 (139)
+.+|.
T Consensus 198 Ls~N~ 202 (487)
T 3oja_A 198 LSSNK 202 (487)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 55543
No 105
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.92 E-value=6.2e-10 Score=76.19 Aligned_cols=84 Identities=19% Similarity=0.125 Sum_probs=72.0
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeecccccc-CCCcchHHhhcCCCCCeEEccC-CcccccCCCCc-ccCCCCCc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNN-LSGKISAQLASLNFLSVLNLSY-NNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~l~l~~-N~l~~~~p~~~-~l~~l~~l 81 (139)
.+++.|++++|++++..+..|..+++|+.|++++|+ ++...+..+..+++|+.+++++ |.+++..+..+ .+.+++.+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478999999999996666689999999999999997 8866666889999999999998 99997776654 67888889
Q ss_pred ccccCCC
Q 046028 82 SYEVNKG 88 (139)
Q Consensus 82 ~~~~n~~ 88 (139)
.+.+|..
T Consensus 111 ~l~~n~l 117 (239)
T 2xwt_C 111 GIFNTGL 117 (239)
T ss_dssp EEEEECC
T ss_pred eCCCCCC
Confidence 8888754
No 106
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.91 E-value=3.7e-09 Score=75.13 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=5.7
Q ss_pred CCCCCeEEccCCccc
Q 046028 52 LNFLSVLNLSYNNLV 66 (139)
Q Consensus 52 l~~L~~l~l~~N~l~ 66 (139)
+++|+.+++++|.++
T Consensus 150 l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVS 164 (308)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCccEEEccCCcCC
Confidence 333333333333333
No 107
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.89 E-value=3.4e-09 Score=75.34 Aligned_cols=60 Identities=23% Similarity=0.352 Sum_probs=27.0
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG 67 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 67 (139)
+++|+.|++++|.+++. +. +..+++|+.|++++|++++. +. +..+++|+.+++++|.+++
T Consensus 128 l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 128 LSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc
Confidence 44444444444444422 21 44444455555555544422 22 4444455555555554443
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.88 E-value=1.8e-09 Score=76.30 Aligned_cols=84 Identities=24% Similarity=0.288 Sum_probs=70.4
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l 81 (139)
..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..+ +..+++|+.+++++|.+++. +....+.+++.+
T Consensus 131 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L 205 (291)
T 1h6t_A 131 VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVL 205 (291)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEE
T ss_pred cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-hhhccCCCCCEE
Confidence 4578899999999999854 678899999999999999996555 88999999999999999864 445577888888
Q ss_pred ccccCCCCC
Q 046028 82 SYEVNKGLY 90 (139)
Q Consensus 82 ~~~~n~~~c 90 (139)
.+.+|+...
T Consensus 206 ~l~~n~i~~ 214 (291)
T 1h6t_A 206 ELFSQECLN 214 (291)
T ss_dssp EEEEEEEEC
T ss_pred ECcCCcccC
Confidence 888886433
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.88 E-value=2.1e-09 Score=83.09 Aligned_cols=79 Identities=27% Similarity=0.386 Sum_probs=37.6
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~ 82 (139)
.+++|+.|+|++|.+++ + +.+..+++|+.|++++|++++. ..+..+++|+.|++++|.+.+.+| ...+.+|+.+.
T Consensus 107 ~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~ 181 (605)
T 1m9s_A 107 DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY 181 (605)
T ss_dssp TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEE
Confidence 44555555555555552 2 2344555555555555555532 334445555555555555544433 22334444444
Q ss_pred cccC
Q 046028 83 YEVN 86 (139)
Q Consensus 83 ~~~n 86 (139)
+.+|
T Consensus 182 Ls~N 185 (605)
T 1m9s_A 182 LSKN 185 (605)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 4333
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.87 E-value=5.1e-09 Score=80.99 Aligned_cols=82 Identities=23% Similarity=0.284 Sum_probs=57.7
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l 81 (139)
..+++|+.|+|++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|.+++. +....+.+|+.+
T Consensus 128 ~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L 202 (605)
T 1m9s_A 128 VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVL 202 (605)
T ss_dssp GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEE
T ss_pred cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEE
Confidence 3467777888888877744 567777778888888888776555 77777788888888877754 444466677777
Q ss_pred ccccCCC
Q 046028 82 SYEVNKG 88 (139)
Q Consensus 82 ~~~~n~~ 88 (139)
.+.+|+.
T Consensus 203 ~L~~N~l 209 (605)
T 1m9s_A 203 ELFSQEC 209 (605)
T ss_dssp ECCSEEE
T ss_pred EccCCcC
Confidence 7766643
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.85 E-value=7e-09 Score=72.22 Aligned_cols=78 Identities=29% Similarity=0.421 Sum_probs=35.2
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (139)
+++|+.|++++|.+++ ++. +..+++|+.|++++|++++ +|.. .. .+|+.+++++|++++. +....+.+++.+.+
T Consensus 62 l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~L 135 (263)
T 1xeu_A 62 FTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSI 135 (263)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEEC
T ss_pred CCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-hhhcCcccccEEEC
Confidence 3444455555555442 222 4444555555555555442 2221 11 4455555555555432 22334455555555
Q ss_pred ccCC
Q 046028 84 EVNK 87 (139)
Q Consensus 84 ~~n~ 87 (139)
.+|.
T Consensus 136 s~N~ 139 (263)
T 1xeu_A 136 RNNK 139 (263)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 5554
No 112
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.84 E-value=3.4e-09 Score=75.48 Aligned_cols=83 Identities=24% Similarity=0.197 Sum_probs=53.4
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhh-cCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLA-SLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~ 82 (139)
+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+. .+++|+.+++++|.+++. +....+.+++.+.
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~ 197 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLD 197 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEE
Confidence 45677777777777755566677777777777777777765555553 566777777777776654 2222355555555
Q ss_pred cccCC
Q 046028 83 YEVNK 87 (139)
Q Consensus 83 ~~~n~ 87 (139)
+.+|.
T Consensus 198 Ls~N~ 202 (317)
T 3o53_A 198 LSSNK 202 (317)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 55554
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.80 E-value=5.7e-09 Score=72.69 Aligned_cols=81 Identities=20% Similarity=0.191 Sum_probs=53.8
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l 81 (139)
..+++|+.|++++|++++ +|.... ++|+.|++++|++++ ++ .+..+++|+.+++++|++++. +....+.+++.+
T Consensus 82 ~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L 155 (263)
T 1xeu_A 82 KDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVL 155 (263)
T ss_dssp TTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEE
T ss_pred ccCCCCCEEECCCCccCC-cCcccc--CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEE
Confidence 456777777777777773 443222 777777777777774 33 467777777777777777754 344456667777
Q ss_pred ccccCCC
Q 046028 82 SYEVNKG 88 (139)
Q Consensus 82 ~~~~n~~ 88 (139)
.+.+|..
T Consensus 156 ~L~~N~i 162 (263)
T 1xeu_A 156 DLHGNEI 162 (263)
T ss_dssp ECTTSCC
T ss_pred ECCCCcC
Confidence 7766654
No 114
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.78 E-value=5.9e-09 Score=77.86 Aligned_cols=81 Identities=20% Similarity=0.243 Sum_probs=42.6
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSY 83 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~ 83 (139)
+++|+.|++++|.+++..| +..+++|+.|++++|++++. ..+..+++|+.+++++|++++.+| ...+..++.+.+
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 382 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGL 382 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEec
Confidence 3445555555555543332 44555555555555555532 245555666666666666665555 344555555666
Q ss_pred ccCCCC
Q 046028 84 EVNKGL 89 (139)
Q Consensus 84 ~~n~~~ 89 (139)
.+|++.
T Consensus 383 ~~n~~~ 388 (466)
T 1o6v_A 383 NDQAWT 388 (466)
T ss_dssp CCEEEE
T ss_pred cCCccc
Confidence 555443
No 115
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.76 E-value=2e-08 Score=71.92 Aligned_cols=80 Identities=29% Similarity=0.382 Sum_probs=52.4
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTS 82 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~ 82 (139)
.+++|++|++++|.++ .++. +..+++|++|++++|.++. ++ .+..+++|+.+++++|.+.+..+ ...+.+++.+.
T Consensus 64 ~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLN 138 (347)
T ss_dssp GCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEE
T ss_pred hcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEE
Confidence 4567777777777777 3444 7777777777777777763 33 46777777777777777765433 34555666666
Q ss_pred cccCC
Q 046028 83 YEVNK 87 (139)
Q Consensus 83 ~~~n~ 87 (139)
+.+|.
T Consensus 139 l~~n~ 143 (347)
T 4fmz_A 139 LGANH 143 (347)
T ss_dssp CTTCT
T ss_pred CCCCC
Confidence 65553
No 116
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.76 E-value=1.8e-08 Score=75.17 Aligned_cols=61 Identities=25% Similarity=0.407 Sum_probs=26.8
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGK 68 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 68 (139)
+++|+.|++++|.+++.. . +..+++|+.|++++|++++..+ +..+++|+.+++++|.+.+.
T Consensus 264 l~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 264 LTKLTELKLGANQISNIS-P-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CTTCSEEECCSSCCCCCG-G-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred CCCCCEEECCCCccCccc-c-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence 344444444444444222 1 4444444444444444443222 34444444444444444443
No 117
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.72 E-value=6.1e-11 Score=79.23 Aligned_cols=60 Identities=28% Similarity=0.361 Sum_probs=28.9
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
+++|+.|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++|+.+++++|.++
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC
Confidence 3445555555555552 34 4444555555555555554 34444444444444444444444
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.70 E-value=1.5e-10 Score=77.36 Aligned_cols=85 Identities=21% Similarity=0.170 Sum_probs=68.2
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC--CCcccCCCCC
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP--TSTQLQSFSP 80 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p--~~~~l~~l~~ 80 (139)
.+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|+.+++++|.+.+..+ ....+.+++.
T Consensus 68 ~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 68 GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLED 144 (198)
T ss_dssp HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSE
T ss_pred cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCE
Confidence 4578999999999998 788878888999999999999985 55 68888999999999999985433 2346777888
Q ss_pred cccccCCCCC
Q 046028 81 TSYEVNKGLY 90 (139)
Q Consensus 81 l~~~~n~~~c 90 (139)
+.+.+|+..+
T Consensus 145 L~l~~N~l~~ 154 (198)
T 1ds9_A 145 LLLAGNPLYN 154 (198)
T ss_dssp EEECSCHHHH
T ss_pred EEecCCcccc
Confidence 8888886544
No 119
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.66 E-value=2.3e-08 Score=70.02 Aligned_cols=66 Identities=29% Similarity=0.348 Sum_probs=49.3
Q ss_pred CCCCCcEEeccCCcCCC--CCccccCCCcccCeeccccccCCCcchHHhhcCC--CCCeEEccCCcccccCC
Q 046028 3 RFVSLYALNLSHNALTG--SIPSSFGNLKHIESLDLSTNNLSGKISAQLASLN--FLSVLNLSYNNLVGKIP 70 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~--~L~~l~l~~N~l~~~~p 70 (139)
++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|++++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 36788888888888886 3445667788888888888888854 2334444 88888888888887665
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.64 E-value=4.3e-08 Score=73.35 Aligned_cols=63 Identities=25% Similarity=0.238 Sum_probs=45.3
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIP 70 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 70 (139)
..+++|+.|++++|.+++. .+..+++|+.|++++|++++ +| +..+++|+.+++++|.+++.++
T Consensus 188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence 4567777788888877744 36777777788888887775 45 6677777777777777776544
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.64 E-value=7.7e-08 Score=71.96 Aligned_cols=79 Identities=27% Similarity=0.249 Sum_probs=58.4
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCc
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPT 81 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l 81 (139)
..+++|+.|++++|++++ +| +..+++|+.|++++|++++. .+..+++|+.+++++|++++ +| ...+.+++.+
T Consensus 167 ~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L 238 (457)
T 3bz5_A 167 TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYF 238 (457)
T ss_dssp TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEE
T ss_pred ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEE
Confidence 456777888888888874 44 67778888888888888754 37778888888888888887 44 4456677777
Q ss_pred ccccCCC
Q 046028 82 SYEVNKG 88 (139)
Q Consensus 82 ~~~~n~~ 88 (139)
.+.+|..
T Consensus 239 ~l~~N~l 245 (457)
T 3bz5_A 239 DCSVNPL 245 (457)
T ss_dssp ECCSSCC
T ss_pred EeeCCcC
Confidence 7777653
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.60 E-value=5.4e-09 Score=74.56 Aligned_cols=60 Identities=25% Similarity=0.236 Sum_probs=28.7
Q ss_pred CCCCcEEeccCCcCCCC-CccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCC
Q 046028 4 FVSLYALNLSHNALTGS-IPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N 63 (139)
+++|+.|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+.+++++|
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCC
Confidence 34455555555544432 4444444455555555555444444444444444555555444
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.59 E-value=5.8e-08 Score=70.04 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=59.3
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcch-HHhhcCCCCCe-EEccCCcccccCCCCc-ccCCCCCc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKIS-AQLASLNFLSV-LNLSYNNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-l~l~~N~l~~~~p~~~-~l~~l~~l 81 (139)
+++++|+|++|+|+...+..|.++++|+.|++++|++.+.+| ..|.+++++.. +.+.+|+++...|..+ .+.+++.+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 468888888888883333568888888888888888765555 35667777664 5556678877766654 56677777
Q ss_pred ccccCCC
Q 046028 82 SYEVNKG 88 (139)
Q Consensus 82 ~~~~n~~ 88 (139)
.+.+|..
T Consensus 110 ~l~~n~l 116 (350)
T 4ay9_X 110 LISNTGI 116 (350)
T ss_dssp EEEEECC
T ss_pred ccccccc
Confidence 7766654
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.59 E-value=3.9e-09 Score=76.97 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=63.6
Q ss_pred CCCCCcEEeccCCcCC----CCCccccCCCcccCeeccccccCCCc----chHHhhc--CCCCCeEEccCCcccc----c
Q 046028 3 RFVSLYALNLSHNALT----GSIPSSFGNLKHIESLDLSTNNLSGK----ISAQLAS--LNFLSVLNLSYNNLVG----K 68 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~----g~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~--l~~L~~l~l~~N~l~~----~ 68 (139)
.+++|+.|++++|.++ ..+|..+..+++|+.|++++|.+++. ++..+.. +++|+.+++++|.+.+ .
T Consensus 214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~ 293 (386)
T 2ca6_A 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 293 (386)
T ss_dssp GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHH
Confidence 4677888888888875 46777778888888888888888755 4555533 7888888888888886 2
Q ss_pred CCCCc--ccCCCCCcccccCCCCC
Q 046028 69 IPTST--QLQSFSPTSYEVNKGLY 90 (139)
Q Consensus 69 ~p~~~--~l~~l~~l~~~~n~~~c 90 (139)
+|... .+++++.+.+.+|+.-.
T Consensus 294 l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 294 LKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp HHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHHhcCCCceEEEccCCcCCc
Confidence 44432 35777888887776543
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.57 E-value=1.2e-07 Score=72.86 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=24.4
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG 67 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 67 (139)
++|+.|++++|.+++ +|. +.. +|+.|++++|++++ +|. .+++|+.|++++|.+++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc
Confidence 344444444444443 333 322 44444444444443 332 33444444444444443
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.57 E-value=4.6e-08 Score=75.19 Aligned_cols=75 Identities=25% Similarity=0.228 Sum_probs=33.5
Q ss_pred CCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCC-------CeEEccCCcccccCCCCcccCCC
Q 046028 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFL-------SVLNLSYNNLVGKIPTSTQLQSF 78 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L-------~~l~l~~N~l~~~~p~~~~l~~l 78 (139)
+|+.|++++|.+++ +|. +. ++|+.|++++|+++ .+|. +.. +| +.+++++|.++..++....+.++
T Consensus 161 ~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 161 SLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPT 232 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTT
T ss_pred CcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCC
Confidence 44444444444442 333 32 44555555555554 3333 222 34 55555555555332223344455
Q ss_pred CCcccccCCC
Q 046028 79 SPTSYEVNKG 88 (139)
Q Consensus 79 ~~l~~~~n~~ 88 (139)
..+.+.+|+.
T Consensus 233 ~~L~L~~N~l 242 (571)
T 3cvr_A 233 CTIILEDNPL 242 (571)
T ss_dssp EEEECCSSSC
T ss_pred CEEEeeCCcC
Confidence 5555555544
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.55 E-value=6.2e-08 Score=69.90 Aligned_cols=72 Identities=21% Similarity=0.180 Sum_probs=59.9
Q ss_pred CCCCCCCcEEeccCCcCCCCCcc-ccCCCcccCe-eccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC
Q 046028 1 MGRFVSLYALNLSHNALTGSIPS-SFGNLKHIES-LDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS 72 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~-L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~ 72 (139)
|.++++|++|+|++|++.+.+|. .|.++++++. +.+..|+++...|..+..+++|+.+++++|.+...++..
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~ 123 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCT
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchh
Confidence 46789999999999998766664 5788988775 567789999777888999999999999999998766543
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.53 E-value=2.6e-08 Score=72.12 Aligned_cols=64 Identities=36% Similarity=0.347 Sum_probs=34.7
Q ss_pred CCcEEeccCCcCCCCCc----cccCCCc-ccCeeccccccCCCcchHHhhcC-----CCCCeEEccCCcccccC
Q 046028 6 SLYALNLSHNALTGSIP----SSFGNLK-HIESLDLSTNNLSGKISAQLASL-----NFLSVLNLSYNNLVGKI 69 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~~p----~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L~~l~l~~N~l~~~~ 69 (139)
+|+.|++++|.++...+ ..+..++ +|+.|++++|+++...+..+..+ .+|+.+++++|.+.+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 96 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKS 96 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence 35666666666554444 4455555 56666666666554445444443 55556666665555433
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.49 E-value=2e-07 Score=72.38 Aligned_cols=77 Identities=26% Similarity=0.171 Sum_probs=46.5
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE 84 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~ 84 (139)
++|+.|++++|.++ .+| ..+++|+.|++++|+++ .+|. .+++|+.+++++|.++..++....+.++..+.+.
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECC
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEec
Confidence 45666666666666 344 33456666777777666 4444 4566777777777777433333356667777777
Q ss_pred cCCCC
Q 046028 85 VNKGL 89 (139)
Q Consensus 85 ~n~~~ 89 (139)
+|+..
T Consensus 293 ~N~l~ 297 (622)
T 3g06_A 293 GNPLS 297 (622)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 77643
No 130
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.49 E-value=2.2e-07 Score=69.46 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=40.8
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCCCCCcccc
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQSFSPTSYE 84 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~l~~l~~~ 84 (139)
++|++|++++|.+++ +| .+..+++|++|++++|++++ +|.. ..+|+.+++++|.+++ +|....+.+++.+.+.
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-CccccCCCCCCEEECC
Confidence 356666666666663 55 46666666666666666663 3332 2355555666555554 3333344444444444
Q ss_pred cC
Q 046028 85 VN 86 (139)
Q Consensus 85 ~n 86 (139)
+|
T Consensus 204 ~N 205 (454)
T 1jl5_A 204 NN 205 (454)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 131
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.49 E-value=1.2e-08 Score=72.75 Aligned_cols=64 Identities=25% Similarity=0.300 Sum_probs=39.9
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccc-cCCCc-chHHhhcCCCCCeEEccCC-ccc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTN-NLSGK-ISAQLASLNFLSVLNLSYN-NLV 66 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~l~l~~N-~l~ 66 (139)
.+++|+.|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|+.+++++| .++
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 4566667777777666556666666666666666666 45532 4445556666666666666 554
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.46 E-value=2e-08 Score=72.78 Aligned_cols=84 Identities=29% Similarity=0.308 Sum_probs=54.0
Q ss_pred CC-CCcEEeccCCcCCCCCccccCCC-----cccCeeccccccCCCcchHHhhc----C-CCCCeEEccCCcccccCCCC
Q 046028 4 FV-SLYALNLSHNALTGSIPSSFGNL-----KHIESLDLSTNNLSGKISAQLAS----L-NFLSVLNLSYNNLVGKIPTS 72 (139)
Q Consensus 4 l~-~L~~L~Ls~N~l~g~~p~~~~~l-----~~L~~L~l~~n~l~~~~p~~~~~----l-~~L~~l~l~~N~l~~~~p~~ 72 (139)
++ +|++|++++|.+++..+..+..+ ++|+.|++++|++++..+..+.. + ++|+.+++++|.+.+..+..
T Consensus 49 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 128 (362)
T 3goz_A 49 TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128 (362)
T ss_dssp CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence 44 67888888888776666666554 77888888888877666654433 3 67778888887776544322
Q ss_pred c-----c-cCCCCCcccccCC
Q 046028 73 T-----Q-LQSFSPTSYEVNK 87 (139)
Q Consensus 73 ~-----~-l~~l~~l~~~~n~ 87 (139)
. . ..+++.+.+.+|.
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHHhCCCceeEEEccCCc
Confidence 1 1 1355666665554
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.45 E-value=4.6e-08 Score=71.26 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=47.3
Q ss_pred CCCCCCcEEeccCC---cCCCCCcccc-------CCCcccCeeccccccCCC----cchHHhhcCCCCCeEEccCCcccc
Q 046028 2 GRFVSLYALNLSHN---ALTGSIPSSF-------GNLKHIESLDLSTNNLSG----KISAQLASLNFLSVLNLSYNNLVG 67 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N---~l~g~~p~~~-------~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l~l~~N~l~~ 67 (139)
..+++|+.|+|++| ++++.+|..+ ..+++|++|++++|.+.. .++..+..+++|+.|++++|.+..
T Consensus 57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence 45677888888775 3444555544 577888888888888876 366777778888888888887753
No 134
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.38 E-value=1.6e-07 Score=70.21 Aligned_cols=78 Identities=32% Similarity=0.353 Sum_probs=50.0
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccc--cCCCCc-cc------
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVG--KIPTST-QL------ 75 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~--~~p~~~-~l------ 75 (139)
++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+.+|+.+++++|++++ .+|... .+
T Consensus 317 ~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~ 388 (454)
T 1jl5_A 317 PSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred CcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence 578999999999984 6654 578999999999999 5666 47899999999999998 555543 33
Q ss_pred -------CCCCCcccccCCCCC
Q 046028 76 -------QSFSPTSYEVNKGLY 90 (139)
Q Consensus 76 -------~~l~~l~~~~n~~~c 90 (139)
.+++.+++.+|+...
T Consensus 389 ~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 389 AEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp ----------------------
T ss_pred cccccccCcCCEEECCCCcCCc
Confidence 567888888887654
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.34 E-value=4.7e-07 Score=70.26 Aligned_cols=65 Identities=28% Similarity=0.268 Sum_probs=57.9
Q ss_pred CCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCC
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTS 72 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~ 72 (139)
.+++|+.|++++|.++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.+++++|.+++.+|..
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 4678999999999999 6776 6788999999999999 78989999999999999999999877654
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.14 E-value=2e-07 Score=69.07 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=25.8
Q ss_pred CCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCcchHHhhc-----CCCCCeEEccCCccc
Q 046028 6 SLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGKISAQLAS-----LNFLSVLNLSYNNLV 66 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~-----l~~L~~l~l~~N~l~ 66 (139)
+|+.|++++|.+++. ++..+..+++|+.|++++|+++...+..+.. .++|+.+++++|.++
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 444444444444322 2233333444555555555444332222221 334555555555444
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.13 E-value=2.7e-07 Score=64.57 Aligned_cols=62 Identities=26% Similarity=0.278 Sum_probs=49.2
Q ss_pred CCCcccCeeccccccCCC--cchHHhhcCCCCCeEEccCCcccccCCCCcccC--CCCCcccccCCC
Q 046028 26 GNLKHIESLDLSTNNLSG--KISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQ--SFSPTSYEVNKG 88 (139)
Q Consensus 26 ~~l~~L~~L~l~~n~l~~--~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~--~l~~l~~~~n~~ 88 (139)
..+++|+.|+|++|++++ .+|..+..+++|+.|++++|.+++. .....+. .|+.+.+.+|+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTT
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcC
Confidence 457899999999999997 4456778899999999999999965 2222333 778888889873
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.96 E-value=7.9e-06 Score=58.29 Aligned_cols=82 Identities=16% Similarity=0.097 Sum_probs=63.9
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCC-eEEccCCcccccCCCCc-ccCCCCCc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLS-VLNLSYNNLVGKIPTST-QLQSFSPT 81 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~-~l~l~~N~l~~~~p~~~-~l~~l~~l 81 (139)
+++|+.+++++|+++..-+..|.++.+|+.+++++| +...-+.+|.++.+|+ .+++++ .++...+..+ .+.+|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999998444467999999999999998 7755667899999999 999988 6665555544 56677777
Q ss_pred ccccCC
Q 046028 82 SYEVNK 87 (139)
Q Consensus 82 ~~~~n~ 87 (139)
.+.+|.
T Consensus 303 ~l~~n~ 308 (329)
T 3sb4_A 303 LATGDK 308 (329)
T ss_dssp EECSSC
T ss_pred EeCCCc
Confidence 765553
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=1.3e-05 Score=57.21 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=62.3
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccC-eeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCc-ccCCC
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIE-SLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTST-QLQSF 78 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~-~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~-~l~~l 78 (139)
|..+.+|+.+++++| ++..-+..|.++.+|+ .+++++ .++...+.+|.++.+|+.++++.|.++...+..+ .+.+|
T Consensus 246 F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 456889999999998 7745556799999999 999998 7775666889999999999999999986666554 34444
Q ss_pred CC
Q 046028 79 SP 80 (139)
Q Consensus 79 ~~ 80 (139)
+.
T Consensus 324 ~~ 325 (329)
T 3sb4_A 324 KL 325 (329)
T ss_dssp CE
T ss_pred hh
Confidence 43
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.90 E-value=2.2e-06 Score=63.44 Aligned_cols=66 Identities=24% Similarity=0.186 Sum_probs=55.0
Q ss_pred CCCCCcEEeccCCcCCCCCccccCC-----CcccCeeccccccCCC----cchHHhhcCCCCCeEEccCCccccc
Q 046028 3 RFVSLYALNLSHNALTGSIPSSFGN-----LKHIESLDLSTNNLSG----KISAQLASLNFLSVLNLSYNNLVGK 68 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~~p~~~~~-----l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l~l~~N~l~~~ 68 (139)
.+++|+.|++++|.++...+..+.. .++|+.|++++|+++. .+|..+..+++|+.+++++|++.+.
T Consensus 339 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 3588999999999998554544432 6799999999999986 6888889999999999999998753
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.73 E-value=2.7e-06 Score=62.13 Aligned_cols=83 Identities=23% Similarity=0.280 Sum_probs=43.7
Q ss_pred CCCcEEeccCCcCCC----CCccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCcccccCCCC----
Q 046028 5 VSLYALNLSHNALTG----SIPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLVGKIPTS---- 72 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~~~~p~~---- 72 (139)
++|++|+|++|.++. .++..+...++|++|++++|.+... +...+....+|+.|++++|.+.......
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 456666666666642 1233334556666666666666522 2334455566667777766665321110
Q ss_pred -cccCCCCCcccccCC
Q 046028 73 -TQLQSFSPTSYEVNK 87 (139)
Q Consensus 73 -~~l~~l~~l~~~~n~ 87 (139)
...++++.+++.+|.
T Consensus 235 L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 235 AREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHCSSCCEEECTTSS
T ss_pred HHhCCCCCEEeccCCC
Confidence 123455666665554
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.69 E-value=7.7e-06 Score=59.68 Aligned_cols=65 Identities=18% Similarity=0.308 Sum_probs=51.9
Q ss_pred CCCCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCcccc
Q 046028 3 RFVSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLVG 67 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~~ 67 (139)
..++|+.|+|++|.++.. ++..+...++|+.|++++|.++.. +...+...++|+.+++++|.+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 467899999999998742 345667788999999999999843 33445567899999999999874
No 143
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.68 E-value=1.5e-05 Score=60.66 Aligned_cols=63 Identities=13% Similarity=0.049 Sum_probs=28.7
Q ss_pred CCCCcEEeccCCcCCC-CCccccCCCcccCeeccccccCCCc-chHHhhcCCCCCeEEccCCccc
Q 046028 4 FVSLYALNLSHNALTG-SIPSSFGNLKHIESLDLSTNNLSGK-ISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
+++|+.|++++|.+++ .++..+..+++|+.|++++|.++.. ++.....+++|+.+++++|+++
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 3445555555555443 2223334445555555555554322 2222334455555555555544
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.65 E-value=5.6e-06 Score=63.07 Aligned_cols=82 Identities=5% Similarity=0.039 Sum_probs=55.7
Q ss_pred CCCCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCC----cchHHhhcCCCCCeEEccCCcccccCCCCcc
Q 046028 3 RFVSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSG----KISAQLASLNFLSVLNLSYNNLVGKIPTSTQ 74 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~----~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~ 74 (139)
.+++|++|++++|.+++. ++..+..+++|+.|+++.|.+++ .++..+..+++|+.+++++|.+.+.+.....
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 467888999999887655 33345567888888998888873 3444556788899999998887763322224
Q ss_pred cCCCCCcccc
Q 046028 75 LQSFSPTSYE 84 (139)
Q Consensus 75 l~~l~~l~~~ 84 (139)
+.+++.+.+.
T Consensus 242 ~~~L~~L~l~ 251 (592)
T 3ogk_B 242 AANLEEFCGG 251 (592)
T ss_dssp CTTCCEEEEC
T ss_pred hhHHHhhccc
Confidence 4555555543
No 145
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.55 E-value=0.00019 Score=44.68 Aligned_cols=57 Identities=26% Similarity=0.309 Sum_probs=42.0
Q ss_pred cEEeccCCcCC-CCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028 8 YALNLSHNALT-GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 8 ~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
..++-+++.++ ..+|..+. .+++.|+|++|+|+...+..|..+.+|+.+++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777888776 35564432 46888899999998655667788888888888888775
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.46 E-value=1e-05 Score=61.55 Aligned_cols=60 Identities=13% Similarity=0.069 Sum_probs=29.2
Q ss_pred CcccCeeccccccCCCcchHHh-hcCCCCCeEEccCCcccccCCC--CcccCCCCCcccccCC
Q 046028 28 LKHIESLDLSTNNLSGKISAQL-ASLNFLSVLNLSYNNLVGKIPT--STQLQSFSPTSYEVNK 87 (139)
Q Consensus 28 l~~L~~L~l~~n~l~~~~p~~~-~~l~~L~~l~l~~N~l~~~~p~--~~~l~~l~~l~~~~n~ 87 (139)
+++|+.|++++|.+++.....+ ..+++|+.+++++|.+++.... ...+++++.+.+.+|+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 4556666666665543333333 4456666666666665422211 1124455555555443
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.33 E-value=6.7e-05 Score=49.34 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=54.3
Q ss_pred CCCCCcEEeccCC-cCCCC----CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCcccccC----
Q 046028 3 RFVSLYALNLSHN-ALTGS----IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLVGKI---- 69 (139)
Q Consensus 3 ~l~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~~~~---- 69 (139)
..+.|++|+|++| .+... +...+...+.|++|++++|.+... +...+....+|+.|++++|.+...-
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 4577888888888 77632 334455667888888888888632 2334555578888888888886321
Q ss_pred C-CCcccCCCCCccc--ccCC
Q 046028 70 P-TSTQLQSFSPTSY--EVNK 87 (139)
Q Consensus 70 p-~~~~l~~l~~l~~--~~n~ 87 (139)
. ......+++.+.+ .+|.
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHhCCCceEEEecCCCCC
Confidence 1 1123345666666 4443
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.22 E-value=6.5e-05 Score=57.16 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=41.1
Q ss_pred CCCCcEEeccCCcCCCCCccccC-CCcccCeeccccc-cCCCc-chHHhhcCCCCCeEEccCCcccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFG-NLKHIESLDLSTN-NLSGK-ISAQLASLNFLSVLNLSYNNLVG 67 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~l~~n-~l~~~-~p~~~~~l~~L~~l~l~~N~l~~ 67 (139)
+++|+.|++++|.+++..+..+. .+++|+.|++++| .++.. ++.....+++|+.|++++|.+++
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~ 170 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD 170 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence 45677777777777655555554 5677777777776 44321 33444467777888887777654
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.21 E-value=0.00015 Score=47.59 Aligned_cols=85 Identities=13% Similarity=0.161 Sum_probs=58.2
Q ss_pred CCCCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEc--cCCcccccCCC-
Q 046028 3 RFVSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNL--SYNNLVGKIPT- 71 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l--~~N~l~~~~p~- 71 (139)
..++|++|+|++|.+... +...+...+.|++|++++|.+... +...+....+|+.+++ ++|.+...-..
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 457899999999998732 234455567899999999998743 3445666788999999 88888732111
Q ss_pred ---C-cccCCCCCcccccCC
Q 046028 72 ---S-TQLQSFSPTSYEVNK 87 (139)
Q Consensus 72 ---~-~~l~~l~~l~~~~n~ 87 (139)
. ....+++.+.+.+|.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCcCEEeccCCC
Confidence 1 123566677776553
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.11 E-value=0.00043 Score=43.02 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=33.6
Q ss_pred CCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCC
Q 046028 5 VSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSG 43 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~ 43 (139)
.+++.|+|++|+|+..-+..|..+++|+.|+|.+|.+..
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 369999999999995555668899999999999999864
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.08 E-value=7.7e-05 Score=54.27 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=54.8
Q ss_pred CCCCCcEEeccC--CcCCCC-----Ccccc--CCCcccCeeccccccCCCcchHHhh---cCCCCCeEEccCCccccc--
Q 046028 3 RFVSLYALNLSH--NALTGS-----IPSSF--GNLKHIESLDLSTNNLSGKISAQLA---SLNFLSVLNLSYNNLVGK-- 68 (139)
Q Consensus 3 ~l~~L~~L~Ls~--N~l~g~-----~p~~~--~~l~~L~~L~l~~n~l~~~~p~~~~---~l~~L~~l~l~~N~l~~~-- 68 (139)
.+++|+.|+|+. |...+. +...+ ..+++|+.|++.+|.+....+..+. .+++|+.|+++.|.+.+.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 578899999864 222211 11122 2478999999999988744444443 467899999999998753
Q ss_pred --CCCC-cccCCCCCcccccCC
Q 046028 69 --IPTS-TQLQSFSPTSYEVNK 87 (139)
Q Consensus 69 --~p~~-~~l~~l~~l~~~~n~ 87 (139)
++.. ..++++..+.+..|.
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHhhcccCCcceEEECCCCc
Confidence 2222 245677777776663
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.99 E-value=0.0014 Score=48.23 Aligned_cols=82 Identities=7% Similarity=0.005 Sum_probs=38.1
Q ss_pred CCCCCcEEeccCCcCC-----CCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCcccccCCCCcccCC
Q 046028 3 RFVSLYALNLSHNALT-----GSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLVGKIPTSTQLQS 77 (139)
Q Consensus 3 ~l~~L~~L~Ls~N~l~-----g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~l~~ 77 (139)
.+++|+.+++.+|.+. ...+..|.++++|+.+.+.+ .++..-...|.++.+|+.+++..| ++......+.-..
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~~ 346 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNTG 346 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSSC
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCCC
Confidence 4455555555555443 12233455555566555552 344333345555566666665433 3322233321114
Q ss_pred CCCcccccC
Q 046028 78 FSPTSYEVN 86 (139)
Q Consensus 78 l~~l~~~~n 86 (139)
++.+.+.+|
T Consensus 347 L~~l~l~~n 355 (401)
T 4fdw_A 347 IKEVKVEGT 355 (401)
T ss_dssp CCEEEECCS
T ss_pred CCEEEEcCC
Confidence 555555444
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.98 E-value=0.00022 Score=46.77 Aligned_cols=82 Identities=9% Similarity=0.097 Sum_probs=54.3
Q ss_pred CCcEEeccCCcCCCCCccccCCCcccCeecccccc-CCCcchHHhhcC----CCCCeEEccCCc-ccc-cCCCCcccCCC
Q 046028 6 SLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNN-LSGKISAQLASL----NFLSVLNLSYNN-LVG-KIPTSTQLQSF 78 (139)
Q Consensus 6 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l----~~L~~l~l~~N~-l~~-~~p~~~~l~~l 78 (139)
+|+.||++++.++..--..+..+++|+.|+++++. ++..--..+..+ ++|+.|+++++. ++. .+....++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 58899999999875444567889999999999985 553222345543 369999999864 542 11112245667
Q ss_pred CCcccccCC
Q 046028 79 SPTSYEVNK 87 (139)
Q Consensus 79 ~~l~~~~n~ 87 (139)
+.+.+.+-+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777765543
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.37 E-value=0.0051 Score=45.19 Aligned_cols=59 Identities=20% Similarity=0.146 Sum_probs=31.3
Q ss_pred CCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccC
Q 046028 2 GRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~ 62 (139)
..+.+|+.++++.|.++ .++.......+|+.+.+..+ +...-...|..+.+|+.+++..
T Consensus 177 ~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 177 YYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred hCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 34566666666666665 33333222455555555533 4433334566666666666654
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.33 E-value=0.0011 Score=43.40 Aligned_cols=63 Identities=14% Similarity=0.119 Sum_probs=46.0
Q ss_pred CCCCCCcEEeccCCc-CCCCCccccCCC----cccCeecccccc-CCCcchHHhhcCCCCCeEEccCCc
Q 046028 2 GRFVSLYALNLSHNA-LTGSIPSSFGNL----KHIESLDLSTNN-LSGKISAQLASLNFLSVLNLSYNN 64 (139)
Q Consensus 2 ~~l~~L~~L~Ls~N~-l~g~~p~~~~~l----~~L~~L~l~~n~-l~~~~p~~~~~l~~L~~l~l~~N~ 64 (139)
..+++|+.|+|+++. ++..--..+..+ ++|++|+++++. ++..--..+..+++|+.|++++..
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 468899999999985 663322345554 479999999975 663333457789999999999863
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.02 E-value=0.0031 Score=45.83 Aligned_cols=63 Identities=16% Similarity=0.140 Sum_probs=31.5
Q ss_pred CCCCcEEeccCCcCCCCCccccC--CCcccCeecccc--ccCCCc-----chHHh--hcCCCCCeEEccCCccc
Q 046028 4 FVSLYALNLSHNALTGSIPSSFG--NLKHIESLDLST--NNLSGK-----ISAQL--ASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~l~~--n~l~~~-----~p~~~--~~l~~L~~l~l~~N~l~ 66 (139)
+++|+.|++..+.+.......+. .+++|+.|+|+. |...+. +...+ ..+++|+.|++.+|.+.
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCc
Confidence 45677777766665432222232 566677776642 111111 00111 23567777777766665
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.14 E-value=0.057 Score=38.81 Aligned_cols=39 Identities=8% Similarity=0.037 Sum_probs=21.6
Q ss_pred ccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccC
Q 046028 24 SFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62 (139)
Q Consensus 24 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~ 62 (139)
.|..+.+|+.+.+.++.++..-...|.++.+|+.+++..
T Consensus 281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 355555666666655555533344555666666666643
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.01 E-value=0.032 Score=40.52 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=27.8
Q ss_pred CCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCC
Q 046028 4 FVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63 (139)
Q Consensus 4 l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N 63 (139)
+.+|+.+.+..+ ++..-...|.++.+|+.+++.++ ++..-..+|.++.+|+.+++..|
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 344555555433 33222334555556666555433 33223345555566666555544
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.80 E-value=0.028 Score=40.77 Aligned_cols=61 Identities=13% Similarity=0.117 Sum_probs=48.0
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCC
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N 63 (139)
|..+.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++..+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 346788999999755 66344567999999999999877 66455568999999999998754
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.72 E-value=0.049 Score=39.52 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=15.9
Q ss_pred cCCCcccCeeccccccCCCcchHHhhcCCCCCeEEcc
Q 046028 25 FGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLS 61 (139)
Q Consensus 25 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~ 61 (139)
|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+.
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 444445555544432 221222344455555555554
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.63 E-value=0.066 Score=38.83 Aligned_cols=64 Identities=11% Similarity=0.254 Sum_probs=49.2
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCCccc
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
|..+.+|+.+++..+ ++..-...|.++.+|+.+.+..+ ++..-..+|.++.+|+.+++.++...
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 345778999999765 55344567999999999999765 66455678999999999999887543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.49 E-value=0.02 Score=38.10 Aligned_cols=63 Identities=25% Similarity=0.303 Sum_probs=45.5
Q ss_pred CCCCcEEeccCC-cCCC----CCccccCCCcccCeeccccccCCCc----chHHhhcCCCCCeEEccCCccc
Q 046028 4 FVSLYALNLSHN-ALTG----SIPSSFGNLKHIESLDLSTNNLSGK----ISAQLASLNFLSVLNLSYNNLV 66 (139)
Q Consensus 4 l~~L~~L~Ls~N-~l~g----~~p~~~~~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~l~l~~N~l~ 66 (139)
-+.|+.|+|++| .+.. .+-..+..-+.|+.|+|++|++... +-..+..=..|+.|+++.|.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 357889999985 7652 1334556667899999999998622 2334555578999999999987
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.40 E-value=0.03 Score=40.31 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=48.0
Q ss_pred CCCCCCCcEEeccCCcCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccCC
Q 046028 1 MGRFVSLYALNLSHNALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSYN 63 (139)
Q Consensus 1 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~N 63 (139)
|..+.+|+.+++.++.++..-...|.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+..+
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 345788999999988888455567999999999999765 55344567889999998877543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.45 E-value=0.045 Score=36.41 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=41.7
Q ss_pred CCCcEEeccCCcCCCC----CccccCCCcccCeeccccccCCCcch----HHhhcCCCCCeEEccCC
Q 046028 5 VSLYALNLSHNALTGS----IPSSFGNLKHIESLDLSTNNLSGKIS----AQLASLNFLSVLNLSYN 63 (139)
Q Consensus 5 ~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~l~~n~l~~~~p----~~~~~l~~L~~l~l~~N 63 (139)
+.|+.|+|++|.+... +...+..-+.|++|+|++|.+...-- ..+..-..|+.|++++|
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 5789999999999722 22334455789999999999974322 23444457999999865
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.12 E-value=19 Score=20.65 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=29.0
Q ss_pred cCCCCCccccCCCcccCeeccccccCCCcchHHhhcCCCCCeEEccC
Q 046028 16 ALTGSIPSSFGNLKHIESLDLSTNNLSGKISAQLASLNFLSVLNLSY 62 (139)
Q Consensus 16 ~l~g~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~l~l~~ 62 (139)
.++..-...|.++.+|+.+.+..+= +..-..+|.++.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 3443444567777788877776643 324445677777887777654
No 166
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=34.80 E-value=12 Score=16.12 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=9.3
Q ss_pred eeeeeehhhhhheee
Q 046028 119 WFFIAMSIGFAVGFG 133 (139)
Q Consensus 119 ~~~~~~~~~~~~~~~ 133 (139)
|..+++++|+.+|-.
T Consensus 4 ~l~iavvlGa~~Gyf 18 (26)
T 2ls4_A 4 YLCIAVAAGAGTGYF 18 (26)
Confidence 455667777666644
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=27.77 E-value=2.8 Score=19.93 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=7.4
Q ss_pred eeeehhhhhheee
Q 046028 121 FIAMSIGFAVGFG 133 (139)
Q Consensus 121 ~~~~~~~~~~~~~ 133 (139)
+.++++|.++|++
T Consensus 13 IAGiVvG~v~gv~ 25 (38)
T 2k1k_A 13 IVAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHH
Confidence 3456666666544
Done!