BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046032
(464 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BZN|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|E Chain E, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|F Chain F, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|G Chain G, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2BZN|H Chain H, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp
pdb|2C6Q|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|E Chain E, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|F Chain F, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|G Chain G, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
pdb|2C6Q|H Chain H, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 Gmpr2 In Complex With Imp And Nadph
Length = 351
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 226 EIRRKTESGQDPEINDPEVGTIKIPNFEYDLEADIR---KGLRKLFSAKGDCTLKEMDTN 282
E+ K +G E E T+++P F+ D+E IR G+R + G LKE+
Sbjct: 282 EMAMKKYAGGVAEYRASEGKTVEVP-FKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRR 340
Query: 283 CDLIQFVEKVN 293
I+ ++VN
Sbjct: 341 TTFIRVTQQVN 351
>pdb|2A7R|A Chain A, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|B Chain B, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|C Chain C, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
pdb|2A7R|D Chain D, Crystal Structure Of Human Guanosine Monophosphate
Reductase 2 (Gmpr2)
Length = 366
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 226 EIRRKTESGQDPEINDPEVGTIKIPNFEYDLEADIR---KGLRKLFSAKGDCTLKEMDTN 282
E+ K +G E E T+++P F+ D+E IR G+R + G LKE+
Sbjct: 290 EMAMKKYAGGVAEYRASEGKTVEVP-FKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRR 348
Query: 283 CDLIQFVEKVN 293
I+ ++VN
Sbjct: 349 TTFIRVTQQVN 359
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 265 RKLFSAKGDCTLKEMDTNCDLIQFVEKVNFSFGKSIIFWHIATE-------FLYEKTAKE 317
R+L+SA +CDL++ + SF S+ F+ + E ++ T K+
Sbjct: 386 RQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKK 445
Query: 318 AISDEET-------YNAREFSKI------LSDYMLYLLVLKP 346
+ D ET N R+ K+ + DY L + +LKP
Sbjct: 446 KMFDLETNEHVKKAINDRQMPKVEYRDIEIDDYNLPMQILKP 487
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,364,831
Number of Sequences: 62578
Number of extensions: 530165
Number of successful extensions: 1132
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 6
length of query: 464
length of database: 14,973,337
effective HSP length: 102
effective length of query: 362
effective length of database: 8,590,381
effective search space: 3109717922
effective search space used: 3109717922
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)