Query 046032
Match_columns 464
No_of_seqs 159 out of 562
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 13:57:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_v 60S acidic ribosomal pr 23.5 25 0.00085 29.6 1.0 20 90-109 5-24 (113)
2 2lbf_B 60S acidic ribosomal pr 16.6 39 0.0013 26.0 0.7 20 90-109 6-25 (70)
3 3izc_v 60S acidic ribosomal pr 16.2 45 0.0015 27.7 1.0 19 90-109 5-23 (106)
4 3bp3_A Glucose-specific phosph 11.5 98 0.0034 24.1 1.7 18 90-107 7-24 (82)
5 3dt5_A Uncharacterized protein 10.1 1.3E+02 0.0044 24.5 2.0 23 97-119 77-99 (135)
6 2fly_A Proadrenomedullin N-20 8.3 1.9E+02 0.0066 17.8 1.8 16 2-18 3-18 (26)
7 3ggz_E Vacuolar protein-sortin 7.4 1.6E+02 0.0054 18.8 1.1 10 155-164 19-28 (29)
8 1iba_A Glucose permease; phosp 7.3 1.4E+02 0.0048 24.4 1.1 18 90-107 16-33 (101)
9 2p06_A Hypothetical protein AF 6.5 2.7E+02 0.0091 22.1 2.3 17 327-343 84-100 (114)
10 4ain_A Glycine betaine transpo 5.9 2E+02 0.007 30.4 1.8 42 57-103 428-475 (539)
No 1
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=23.52 E-value=25 Score=29.62 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCCceeecccc
Q 046032 90 APFLLLHLGGPDTITAVALE 109 (464)
Q Consensus 90 ApfLLlhLGg~DtITAysle 109 (464)
|..||+||||..+||+-.|+
T Consensus 5 aAylL~~l~G~~~ptad~I~ 24 (113)
T 3iz5_v 5 AAYLLAYLSGNASPSAEDLT 24 (113)
T ss_dssp HHHHHHHHHTCCCCTTTTHH
T ss_pred HHHHHHHHcCCCCCCHHHHH
Confidence 67899999999999887654
No 2
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=16.65 E-value=39 Score=25.97 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=15.8
Q ss_pred HHHHHHHhcCCCceeecccc
Q 046032 90 APFLLLHLGGPDTITAVALE 109 (464)
Q Consensus 90 ApfLLlhLGg~DtITAysle 109 (464)
+..||+|+||..+||+-.++
T Consensus 6 yA~Lll~~~g~~~~ta~~I~ 25 (70)
T 2lbf_B 6 ASYLLAALGGNSSPSAKDIK 25 (70)
T ss_dssp HHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHH
Confidence 56799999999999875443
No 3
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=16.15 E-value=45 Score=27.69 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCCceeecccc
Q 046032 90 APFLLLHLGGPDTITAVALE 109 (464)
Q Consensus 90 ApfLLlhLGg~DtITAysle 109 (464)
|..||+|+||.+ ||+-.|+
T Consensus 5 aAyLL~~~gG~e-~tad~I~ 23 (106)
T 3izc_v 5 AAYLLLNAAGNT-PDATKIK 23 (106)
T ss_dssp HHHHHHHHHTCC-CTTTTHH
T ss_pred HHHHHHHhcCCC-CCHHHHH
Confidence 568999999998 9887654
No 4
>3bp3_A Glucose-specific phosphotransferase enzyme IIB component; transcription regulation, inner membrane, kinase, membrane, phosphoprotein; 1.65A {Escherichia coli} PDB: 1o2f_B 3bp8_C
Probab=11.53 E-value=98 Score=24.13 Aligned_cols=18 Identities=39% Similarity=0.685 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCCceeecc
Q 046032 90 APFLLLHLGGPDTITAVA 107 (464)
Q Consensus 90 ApfLLlhLGg~DtITAys 107 (464)
|.-++-.|||.|||....
T Consensus 7 a~~ii~~lGG~~NI~~v~ 24 (82)
T 3bp3_A 7 APALVAAFGGKENITNLD 24 (82)
T ss_dssp HHHHHHHTTCGGGEEEEE
T ss_pred HHHHHHHhCCHHHHhhhc
Confidence 667889999999998753
No 5
>3dt5_A Uncharacterized protein AF_0924; structural genomics, APC7732, unknown function, PSI-2, prote structure initiative; HET: MSE; 1.94A {Archaeoglobus fulgidus}
Probab=10.11 E-value=1.3e+02 Score=24.54 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=19.5
Q ss_pred hcCCCceeecccchhHHHHHHHH
Q 046032 97 LGGPDTITAVALEDNELWLRQLF 119 (464)
Q Consensus 97 LGg~DtITAysleDn~lW~RhlL 119 (464)
.+|.-+-|-|+-||.++|+..+=
T Consensus 77 iagsanwtfyakedfeqwkeald 99 (135)
T 3dt5_A 77 IAGSANWTFYAKEDFEQWKEALD 99 (135)
T ss_dssp CTTCSSEEESSHHHHHHHHHHHH
T ss_pred hccccceeEEeHhhHHHHHHHHH
Confidence 46788899999999999997643
No 6
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=8.32 E-value=1.9e+02 Score=17.83 Aligned_cols=16 Identities=25% Similarity=0.765 Sum_probs=11.6
Q ss_pred CCCChhhHHHHHhHhhH
Q 046032 2 DNPIPESVKKTWDNWNI 18 (464)
Q Consensus 2 ~~~~~~~~~~~W~eW~i 18 (464)
|+++|+. .+=||.|.+
T Consensus 3 ld~~sef-rKKwn~w~l 18 (26)
T 2fly_A 3 LDVASEF-RKKWNKWAL 18 (26)
T ss_pred ccccHHH-HHHHHHHHH
Confidence 4566666 777999965
No 7
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=7.41 E-value=1.6e+02 Score=18.76 Aligned_cols=10 Identities=40% Similarity=0.421 Sum_probs=7.8
Q ss_pred hhhhhHHHHH
Q 046032 155 KCFERTRAMY 164 (464)
Q Consensus 155 Ky~er~~al~ 164 (464)
|.+||..|||
T Consensus 19 kLAqRLRALR 28 (29)
T 3ggz_E 19 KLAQRLRALR 28 (29)
T ss_pred HHHHHHHHHc
Confidence 6778888887
No 8
>1iba_A Glucose permease; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane, inner membrane, phoshphotransferase; NMR {Escherichia coli} SCOP: d.95.1.1
Probab=7.34 E-value=1.4e+02 Score=24.37 Aligned_cols=18 Identities=39% Similarity=0.685 Sum_probs=15.2
Q ss_pred HHHHHHHhcCCCceeecc
Q 046032 90 APFLLLHLGGPDTITAVA 107 (464)
Q Consensus 90 ApfLLlhLGg~DtITAys 107 (464)
|.-++-.|||.|||+...
T Consensus 16 A~~Ii~alGG~eNI~~v~ 33 (101)
T 1iba_A 16 APALVAAFGGKENITNLD 33 (101)
T ss_dssp HHHHTHHHHTCTTCSBCC
T ss_pred HHHHHHHhCCHHHHhhhc
Confidence 667899999999998754
No 9
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=6.53 E-value=2.7e+02 Score=22.09 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=12.0
Q ss_pred hHHHHHHhhhhHHHHHh
Q 046032 327 AREFSKILSDYMLYLLV 343 (464)
Q Consensus 327 ~~~~~~~LS~YmmYLl~ 343 (464)
.+.---...|+||||--
T Consensus 84 lrdelldvanfcmylwg 100 (114)
T 2p06_A 84 LRDELLDVANFCMYLWG 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44445567899999864
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=5.95 E-value=2e+02 Score=30.37 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHhhhcccCCCCCCCCcchhhhHHHHH------HHHhcCCCce
Q 046032 57 LADSAATFAIGLIAERAINSQTPTKSNELLVLWAPFL------LLHLGGPDTI 103 (464)
Q Consensus 57 ~ad~~a~yalG~ls~~~~~~~~~~~~~~l~~~WApfL------LlhLGg~DtI 103 (464)
.+| -++|+++.++.+... +++.....||+..+ |+-.||.|.+
T Consensus 428 SaD-S~s~vl~~~ss~g~~----~p~~~~rifWgv~~g~va~~LL~~GG~~~L 475 (539)
T 4ain_A 428 SAD-SASTVMGTMSQHGQL----EANKWVTAAWGVATAAIGLTLLLSGGDNAL 475 (539)
T ss_dssp TTH-HHHHHHHHHHTTTCS----SCCHHHHHHHHHHHHHHHHHHTTC-----C
T ss_pred ccc-hHHHHHHHHHcCCCC----CCCcchhhHHHHHHHHHHHHHHHhCCHHHH
Confidence 344 477999999875321 24566789998654 4555665533
Done!