Query 046032
Match_columns 464
No_of_seqs 159 out of 562
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 13:57:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046032.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046032hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bp8c1 d.95.1.1 (C:13-87) Glu 26.6 15 0.0011 26.6 2.2 18 90-107 2-19 (75)
2 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 13.1 65 0.0047 22.0 2.9 40 394-441 11-51 (59)
3 d2p06a1 a.204.1.3 (A:1-84) Hyp 9.0 85 0.0062 21.9 2.3 17 327-343 63-79 (84)
4 d1jb0m_ f.23.19.1 (M:) Subunit 7.8 45 0.0033 19.7 0.3 13 298-310 18-30 (31)
5 d1o65a_ b.58.1.2 (A:) Hypothet 5.1 71 0.0051 27.8 0.1 25 96-120 57-82 (233)
6 d2r6gf2 f.58.1.1 (F:261-504) M 4.9 7.4E+02 0.054 19.8 7.4 47 26-72 36-82 (244)
7 d1i6ua_ d.140.1.1 (A:) Ribosom 4.4 25 0.0018 28.0 -3.3 13 434-446 114-126 (129)
8 d2ysca1 b.72.1.1 (A:8-33) Amyl 4.2 73 0.0053 18.1 -0.3 10 298-307 13-22 (26)
9 d2gcxa1 b.34.1.2 (A:1-75) Ferr 3.8 1.5E+02 0.011 20.8 1.1 42 98-139 6-47 (75)
10 d1w36c1 c.37.1.19 (C:1-347) Ex 3.8 1.7E+02 0.012 26.5 1.7 56 295-350 85-147 (347)
No 1
>d3bp8c1 d.95.1.1 (C:13-87) Glucose permease domain IIB {Escherichia coli [TaxId: 562]}
Probab=26.63 E-value=15 Score=26.64 Aligned_cols=18 Identities=39% Similarity=0.685 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCCceeecc
Q 046032 90 APFLLLHLGGPDTITAVA 107 (464)
Q Consensus 90 ApfLLlhLGg~DtITAys 107 (464)
|+-++-+|||.|||+...
T Consensus 2 A~~ii~~lGG~~NI~~~~ 19 (75)
T d3bp8c1 2 APALVAAFGGKENITNLD 19 (75)
T ss_dssp HHHHHHHTTCTTTEEEEC
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 566788999999998753
No 2
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.14 E-value=65 Score=22.04 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=25.5
Q ss_pred HHHHHHhccccCchhHHHHHHHHHHHHhhHhccCCccc-hhHHHHhccC
Q 046032 394 RMVDRLQSLDYLKDKKWEIVSKVWVELMSYAACHSRAT-RTHVEQVSNG 441 (464)
Q Consensus 394 ~La~~L~~~~~~~~~~W~~i~~vWvEmL~YaA~~c~~~-~~HAkqL~~G 441 (464)
.|.+.|.....+..+||+.|++. + ++..-+ +.|+|+|..+
T Consensus 11 ~le~Al~~~P~gt~~RW~~IA~~-------v-gkt~~ev~~~~k~l~e~ 51 (59)
T d2cqqa1 11 QLTRSMVKFPGGTPGRWEKIAHE-------L-GRSVTDVTTKAKQLKDS 51 (59)
T ss_dssp HHHHHHHHSCTTCTTHHHHHHHH-------H-TSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCCcHHHHHHHHH-------H-CCCHHHHHHHHHHHHHh
Confidence 45566666655567899999986 2 344322 4677777654
No 3
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=9.05 E-value=85 Score=21.92 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=11.8
Q ss_pred hHHHHHHhhhhHHHHHh
Q 046032 327 AREFSKILSDYMLYLLV 343 (464)
Q Consensus 327 ~~~~~~~LS~YmmYLl~ 343 (464)
.+.---...|+||||--
T Consensus 63 lrdelldvanfcmylwg 79 (84)
T d2p06a1 63 LRDELLDVANFCMYLWG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445567899999863
No 4
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=7.85 E-value=45 Score=19.66 Aligned_cols=13 Identities=15% Similarity=0.521 Sum_probs=9.5
Q ss_pred chhhhhhhhchhh
Q 046032 298 KSIIFWHIATEFL 310 (464)
Q Consensus 298 ~sILiWHIATdic 310 (464)
-.||.|.+||+++
T Consensus 18 pg~lafrlately 30 (31)
T d1jb0m_ 18 PAVLAFRLSTELY 30 (31)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 4677888888764
No 5
>d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli [TaxId: 562]}
Probab=5.09 E-value=71 Score=27.82 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=20.9
Q ss_pred HhcCCC-ceeecccchhHHHHHHHHH
Q 046032 96 HLGGPD-TITAVALEDNELWLRQLFG 120 (464)
Q Consensus 96 hLGg~D-tITAysleDn~lW~RhlL~ 120 (464)
|-|||| .+++|+.|+-+.|.+.+-.
T Consensus 57 ~HGG~dkAV~~~~~e~y~~w~~~l~~ 82 (233)
T d1o65a_ 57 VHGGPDRALCHYPREHYLYWAREFPE 82 (233)
T ss_dssp CCCGGGGSEEEEETHHHHHHHHHCGG
T ss_pred CCCCcCCEEEEeCHHHHHHHHHHhcc
Confidence 568888 6999999999999887643
No 6
>d2r6gf2 f.58.1.1 (F:261-504) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.94 E-value=7.4e+02 Score=19.84 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCccccCchhHHHHHHHHhhhhhhhHHHHHHHHhhhc
Q 046032 26 LLLQTVLILLAPLRKGMGYKLIILLIWSAYFLADSAATFAIGLIAER 72 (464)
Q Consensus 26 ~~lq~~L~~~~~~Rr~~~~~~l~~~~W~aY~~ad~~a~yalG~ls~~ 72 (464)
..+-+.+...-.+|+...+++++.++-+.+...-.++.+....+...
T Consensus 36 ~~~~~~lA~~l~~~~~~~~~~~~~~~~~p~~ip~~v~~~~~~~~~~~ 82 (244)
T d2r6gf2 36 VAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISILIFKGLFNQ 82 (244)
T ss_dssp HHHHHHHHHHHTCSSSTTHHHHHHHTTHHHHSCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 33333334444667778889999999999998876666666555543
No 7
>d1i6ua_ d.140.1.1 (A:) Ribosomal protein S8 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.41 E-value=25 Score=27.99 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=6.2
Q ss_pred HHHHhccCcchHH
Q 046032 434 HVEQVSNGGELFT 446 (464)
Q Consensus 434 HAkqL~~GGEllT 446 (464)
-|++++-|||+|-
T Consensus 114 eAr~~~vGGEiLc 126 (129)
T d1i6ua_ 114 EAKKRGLGGRLLA 126 (129)
T ss_dssp HHHHTTCCEEEEE
T ss_pred HHHHcCCCceEEE
Confidence 3444445555443
No 8
>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.21 E-value=73 Score=18.12 Aligned_cols=10 Identities=20% Similarity=0.963 Sum_probs=7.5
Q ss_pred chhhhhhhhc
Q 046032 298 KSIIFWHIAT 307 (464)
Q Consensus 298 ~sILiWHIAT 307 (464)
..+.-|||-|
T Consensus 13 ag~YyWHiPt 22 (26)
T d2ysca1 13 AGTYYWHVPS 22 (26)
T ss_dssp TEEEEEESSS
T ss_pred CceEEEeccC
Confidence 4567899877
No 9
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]}
Probab=3.82 E-value=1.5e+02 Score=20.77 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=32.6
Q ss_pred cCCCceeecccchhHHHHHHHHHHHHhhhheeeEEEeccCCC
Q 046032 98 GGPDTITAVALEDNELWLRQLFGLIFQAGFTFYVFLLSLPGN 139 (464)
Q Consensus 98 Gg~DtITAysleDn~lW~RhlL~l~~Qv~~~~yv~~~s~~~~ 139 (464)
|-.-.|+.|+-+-+...+|+|+.+.+--...+-++.++..+.
T Consensus 6 g~~~~I~g~~~~~~~~~~~RL~~mGl~pG~~V~v~~~ap~g~ 47 (75)
T d2gcxa1 6 DSAWKITGFSRDISPAYRQKLLSLGMLPGSSFHVVRVAPLGD 47 (75)
T ss_dssp TSEEEEECCCSSCCHHHHHHHTTTTCCSSEEEEECCCCSSCC
T ss_pred CCcEEEEEecccCCHHHHHHHHHcCCCCCCEEEEEEECCCCC
Confidence 445679999977788999999999988877777777765443
No 10
>d1w36c1 c.37.1.19 (C:1-347) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.77 E-value=1.7e+02 Score=26.52 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=31.2
Q ss_pred Cccchhhhhhhhchhhhhccccc-------ccCchhhhhhHHHHHHhhhhHHHHHhhCCCCCC
Q 046032 295 SFGKSIIFWHIATEFLYEKTAKE-------AISDEETYNAREFSKILSDYMLYLLVLKPTMLN 350 (464)
Q Consensus 295 ~f~~sILiWHIATdic~~~~~~~-------~~~~~~~~~~~~~~~~LS~YmmYLl~~~P~MLp 350 (464)
+|+...|+|.|..=+-...+.+. -..+.+.......|+.|++-----++.||+||-
T Consensus 85 ~~~~~~L~Wrl~~lL~~~~~~~~~~~l~~yL~~~~~~~r~~qLA~~iAdlFdqY~~yRPdwl~ 147 (347)
T d1w36c1 85 AFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLA 147 (347)
T ss_dssp TTCHHHHHHHHHHHHHHHCSSSTTHHHHHHTTSSCSSHHHHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred CCchHhHHHHHHHHhHhhhcCcccHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 68999999999764422211110 001122233456677766644444556999985
Done!