BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046033
(434 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 102/264 (38%), Positives = 148/264 (56%), Gaps = 25/264 (9%)
Query: 186 VLVKTSREIESKDLHYLSY--ITKKETIPVGPLV----QEPIYTDNNNDTKIMDWLSRKE 239
+LV T E+E + L + K PVGPLV QE T+ +++ + WL +
Sbjct: 210 ILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTE---ESECLKWLDNQP 266
Query: 240 PSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVR----------FHSEGNFTIEE 289
SV+YVSFGS L+ E++NELA GL SE F+WV+R F S
Sbjct: 267 LGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLT 326
Query: 290 ALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVP 349
LP GF E + +G V+ WAPQA++L H S GGF++HCGW ST+E ++ G+P+IA P
Sbjct: 327 FLPPGFLERTK--KRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWP 384
Query: 350 MVLDQLFNAKMVA-DIGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELS 408
+ +Q NA +++ DI L PR + VR+EE+ARV K ++E EEG+ ++ K KEL
Sbjct: 385 LYAEQKMNAVLLSEDIRAALR-PRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELK 443
Query: 409 ESIKKKGDDEEINVVEKLLQLVKV 432
E+ + D+ + K L LV +
Sbjct: 444 EAACRVLKDDGTST--KALSLVAL 465
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 139/257 (54%), Gaps = 52/257 (20%)
Query: 186 VLVKTSREIESKDLHYLSYITKKETIPVGPL---------VQEPIYTDNN---NDTKIMD 233
+L+ T E+ES ++ LS T P+GPL + + D+N DT+ +D
Sbjct: 229 ILLNTFNELESDVINALSS-TIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLD 287
Query: 234 WLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVR----------FHSEG 283
WL KEP SVVYV+FGS ++ E++ E A GL + SF+W++R F SE
Sbjct: 288 WLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSE- 346
Query: 284 NFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGV 343
F EI ++G++ W PQ K+L H SIGGF++HCGW ST E I GV
Sbjct: 347 -----------FTNEIA--DRGLIAS-WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGV 392
Query: 344 PIIAVPMVLDQLFNAKMVAD---IGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQI 400
P++ P DQ + + + + IG+ EI+ V++EELA++ +V+ ++G+++
Sbjct: 393 PMLCWPFFADQPTDCRFICNEWEIGM-------EIDTNVKREELAKLINEVIAGDKGKKM 445
Query: 401 KRKAKELSESIKKKGDD 417
K+KA EL KKK ++
Sbjct: 446 KQKAMEL----KKKAEE 458
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 1 HGHITPYLALAKKLSQQNFHIYFCSTPIN 29
GHI P LAK L + FHI F +T N
Sbjct: 19 QGHINPLFKLAKLLHLRGFHITFVNTEYN 47
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 114/214 (53%), Gaps = 24/214 (11%)
Query: 227 NDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFT 286
N T + WL ++P+SVVY+SFG+ E+ L+ L S V FIW +R + +
Sbjct: 257 NTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKARVH-- 314
Query: 287 IEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPII 346
LP+GF E+ +G GMVV WAPQA++L H ++G F++HCGW S E + GVP+I
Sbjct: 315 ----LPEGFLEKTRG--YGMVVP-WAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLI 367
Query: 347 AVPMVLDQLFNAKMVAD---IGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRK 403
P DQ N +MV D IGV +E K L F Q++ QE+G++++
Sbjct: 368 CRPFFGDQRLNGRMVEDVLEIGVRIE------GGVFTKSGLMSCFDQILSQEKGKKLREN 421
Query: 404 AKELSESIKK----KGDDEEINVVEKLLQLVKVP 433
+ L E+ + KG E N + L+ LV P
Sbjct: 422 LRALRETADRAVGPKGSSTE-NFI-TLVDLVSKP 453
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 125/238 (52%), Gaps = 24/238 (10%)
Query: 184 KLVLVKTSREIESKDLHYLSYITKKETIP----VGPLV----QEPIYTDNNNDTKIMDWL 235
K ++V T ++E + L E IP VGPL+ Q D I+ WL
Sbjct: 213 KGIIVNTFSDLEQSSIDAL--YDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWL 270
Query: 236 SRKEPSSVVYVSFGSEYF-LSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQG 294
+ SVV++ FGS ++ E+A GL S V F+W N ++ P+G
Sbjct: 271 DEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEG 323
Query: 295 FAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQ 354
F E ++ KGM+ GWAPQ ++L H +IGGF+SHCGW S +E + +GVPI+ P+ +Q
Sbjct: 324 FLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQ 382
Query: 355 LFNA-KMVAD--IGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSE 409
NA ++V + +G+GL V + + V EE+ + K +++++ + +K +E+ E
Sbjct: 383 QLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD--SIVHKKVQEMKE 438
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 125/238 (52%), Gaps = 24/238 (10%)
Query: 184 KLVLVKTSREIESKDLHYLSYITKKETIP----VGPLV----QEPIYTDNNNDTKIMDWL 235
K ++V T ++E + L E IP VGPL+ Q D I+ WL
Sbjct: 213 KGIIVNTFSDLEQSSIDAL--YDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWL 270
Query: 236 SRKEPSSVVYVSFGSEYF-LSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQG 294
+ SVV++ FGS ++ E+A GL S V F+W N ++ P+G
Sbjct: 271 DEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEKKVFPEG 323
Query: 295 FAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQ 354
F E ++ KGM+ GWAPQ ++L H +IGGF+SHCGW S +E + +GVPI+ P+ +Q
Sbjct: 324 FLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQ 382
Query: 355 LFNA-KMVAD--IGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSE 409
NA ++V + +G+GL V + + V EE+ + K +++++ + +K +E+ E
Sbjct: 383 QLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKD--SIVHKKVQEMKE 438
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/223 (33%), Positives = 114/223 (51%), Gaps = 20/223 (8%)
Query: 213 VGPLVQEPIYTDNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVS 272
VGP +++ ++WL + E SSVVY+SFGS E+ LA L
Sbjct: 245 VGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFP 304
Query: 273 FIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGW 332
FIW R + E LP+GF E + KG +V WAPQ +IL H S+G F++H GW
Sbjct: 305 FIWSFRGDPK------EKLPKGFLERTK--TKGKIV-AWAPQVEILKHSSVGVFLTHSGW 355
Query: 333 GSTVEGIMYGVPIIAVPMVLDQLFNAKM---VADIGVGLEVPRDEINQRVRKEELARVFK 389
S +E I+ GVP+I+ P DQ N + V +IGVG++ N + KE + + +
Sbjct: 356 NSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVD------NGVLTKESIKKALE 409
Query: 390 QVVEQEEGQQIKRKAKELSESIKKKGDDEEINVVE--KLLQLV 430
+ E+G +++K +L ES K + + ++ L+Q+V
Sbjct: 410 LTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIV 452
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 308 VQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVG 367
V W PQ IL S FI+H G GST+E + VP++AVP + +Q NA+ + ++G+G
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLG 366
Query: 368 LEVPRDEIN-QRVRKEELA 385
+PRD++ +++R+ LA
Sbjct: 367 RHIPRDQVTAEKLREAVLA 385
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 308 VQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVG 367
V W PQ IL + F++H G G + EG+ P+IAVP +DQ NA M+ +GV
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVA 344
Query: 368 LEVPRDEINQRVRKE---------ELARVFKQVVEQEEGQQIKRKAKELSES 410
++ +E + +E E+AR +++ + + R+A +L E+
Sbjct: 345 RKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIEA 396
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%)
Query: 311 WAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEV 370
W PQ +LGH FI+H G E I +G+P + +P+ DQ N G + V
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRV 134
Query: 371 PRDEINQRVRKEELARVFKQVVEQEEGQQIKR 402
+ + L RV +E ++ R
Sbjct: 135 DFNTXSSTDLLNALKRVINDPSYKENVXKLSR 166
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 225 NNNDTKIMDWL--SRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSE 282
N + ++ W+ RK+P + ++FG+ L N + GL L + + +
Sbjct: 210 NGRNDQVPSWVFEERKQPR--LCLTFGTRVPLPN--TNTIPGGLSLLQALSQELPKL--- 262
Query: 283 GNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYG 342
F + A+ A+ +Q +G++ G P + I + + H G G+T+ + G
Sbjct: 263 -GFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIXPACDV--VVHHGGHGTTLTCLSEG 319
Query: 343 VPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARV 387
VP ++VP++ + +A+++ G G+EVP ++ AR+
Sbjct: 320 VPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARI 364
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 225 NNNDTKIMDWL--SRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSE 282
N + ++ W+ RK+P + ++FG+ L N + GL L + + +
Sbjct: 211 NGRNDQVPSWVFEERKQPR--LCLTFGTRVPLPN--TNTIPGGLSLLQALSQELPKL--- 263
Query: 283 GNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYG 342
F + A+ A+ +Q +G++ G P + I + + H G G+T+ + G
Sbjct: 264 -GFEVVVAVSDKLAQTLQPLPEGVLAAGQFPLSAIXPACDV--VVHHGGHGTTLTCLSEG 320
Query: 343 VPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARV 387
VP ++VP++ + +A+++ G G+EVP ++ AR+
Sbjct: 321 VPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAACARI 365
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 311 WAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEV 370
W P K+L ++ ++H G G+ E + +G P++ VP D A+ V +G+G +
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVL 361
Query: 371 PRDEIN 376
P ++ +
Sbjct: 362 PGEKAD 367
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 311 WAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEV 370
W P K+L ++ ++H G G+ E + +G P++ VP D A+ V +G+G +
Sbjct: 304 WVPHVKVLEQATV--CVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVL 361
Query: 371 PRDEIN 376
P ++ +
Sbjct: 362 PGEKAD 367
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 12/107 (11%)
Query: 321 GSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVR 380
G + + H G G+T G P + VP DQ + A VAD+GVG V D V
Sbjct: 283 GRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVG--VAHDGPTPTV- 339
Query: 381 KEELARVFKQVVEQEEGQQIKRKAKELSESIKKKGDDEEINVVEKLL 427
E L+ + I+ +A ++ +I+ G V KLL
Sbjct: 340 -ESLSAALATALT----PGIRARAAAVAGTIRTDG----TTVAAKLL 377
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 321 GSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGL 368
G + I H G G+T G P I +P + DQ + A VA++GVG+
Sbjct: 300 GRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGV 347
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 327 ISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELAR 386
+ H G GS ++GVP + +P D A+ + G G+ +P E+ +E + R
Sbjct: 340 VHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKR 399
Query: 387 VFKQVVEQEEGQQIK 401
V + +++
Sbjct: 400 VLDDPAHRAGAARMR 414
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 308 VQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQL 355
++ W PQA +L H + + H G G+T+ + GVP ++ P D
Sbjct: 296 LESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFPWAGDSF 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 311 WAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVP-MVLDQLFNAKMVADIGVGLE 369
W P +L H ++H G+ +E GVP++ VP + +A+ V ++G+G
Sbjct: 288 WIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSV 345
Query: 370 VPRDEINQRVRKEELARV 387
+ D++ +E + R+
Sbjct: 346 LRPDQLEPASIREAVERL 363
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 1 HGHITPYLALAKKLSQQNFHIYFCSTPI 28
HGH+ P L L +L+++ I + +TP+
Sbjct: 15 HGHVYPSLGLVSELARRGHRITYVTTPL 42
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 16/101 (15%)
Query: 321 GSIGGFISHCGWGSTVEGIMYGVPIIA----VPMVLDQLFNAKMVADIGVGLEV--PRDE 374
G + I H G+T+ + G+P I V V++Q ++A VA++GVG+ V P
Sbjct: 285 GRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVVDNVVEQAYHADRVAELGVGVAVDGPVPT 344
Query: 375 INQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG 415
I+ ++ +I+ +A ++++I+ G
Sbjct: 345 IDS----------LSAALDTALAPEIRARATTVADTIRADG 375
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 71/198 (35%), Gaps = 23/198 (11%)
Query: 234 WLSRKEPSSVVYVSFGSEYFLSKEEMN-ELASGLLLSEVSFIWVVRFHSEGNFTIEEALP 292
W+ ++ V V+ GS + N + GL V W V T+ EAL
Sbjct: 203 WMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVR--WDVELIVAAPDTVAEAL- 259
Query: 293 QGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVL 352
AE Q + AP +L H H G ST+ G+ GVP + +P
Sbjct: 260 --RAEVPQARVGWTPLDVVAPTCDLLVH--------HAGGVSTLTGLSAGVPQLLIPKGS 309
Query: 353 DQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIK 412
A+ VAD G + + E + + E + R+A++LS I
Sbjct: 310 VLEAPARRVADYGAAIALLPGE-------DSTEAIADSCQELQAKDTYARRAQDLSREI- 361
Query: 413 KKGDDEEINVVEKLLQLV 430
G VV L QL
Sbjct: 362 -SGMPLPATVVTALEQLA 378
>pdb|1M39|A Chain A, Solution Structure Of The C-Terminal Fragment (F86-I165)
Of The Human Centrin 2 In Calcium Saturated Form
Length = 89
Score = 28.1 bits (61), Expect = 9.7, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 363 DIGVGLEVPRDEINQRVRKEELARVFKQVVEQEEG----QQIKRKAKELSESIKKKGDDE 418
+ G L V +++++ KEE+ + FK + E G + +KR AKEL E++ + E
Sbjct: 2 NFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQE 61
Query: 419 EINVVEK 425
I+ ++
Sbjct: 62 MIDEADR 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,142,939
Number of Sequences: 62578
Number of extensions: 486820
Number of successful extensions: 1474
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1434
Number of HSP's gapped (non-prelim): 43
length of query: 434
length of database: 14,973,337
effective HSP length: 102
effective length of query: 332
effective length of database: 8,590,381
effective search space: 2852006492
effective search space used: 2852006492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)