Query 046033
Match_columns 434
No_of_seqs 124 out of 1479
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 08:06:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02670 transferase, transfer 100.0 3.1E-58 6.6E-63 443.3 42.7 424 1-430 17-467 (472)
2 PLN02764 glycosyltransferase f 100.0 2.1E-57 4.6E-62 433.9 44.2 420 1-433 16-450 (453)
3 PLN00414 glycosyltransferase f 100.0 1.2E-56 2.7E-61 431.6 43.4 415 1-429 15-441 (446)
4 PLN02208 glycosyltransferase f 100.0 1.1E-56 2.4E-61 431.5 42.2 414 1-428 15-439 (442)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 3.9E-55 8.3E-60 424.8 43.2 419 1-430 20-473 (477)
6 PLN02534 UDP-glycosyltransfera 100.0 2.4E-54 5.2E-59 418.3 42.5 424 1-428 19-486 (491)
7 PLN02992 coniferyl-alcohol glu 100.0 2.5E-54 5.5E-59 416.4 42.3 410 1-428 16-469 (481)
8 PLN02410 UDP-glucoronosyl/UDP- 100.0 6.9E-54 1.5E-58 413.2 42.5 403 1-428 18-450 (451)
9 PLN02173 UDP-glucosyl transfer 100.0 1.2E-53 2.5E-58 409.6 41.9 400 1-426 16-446 (449)
10 PLN03007 UDP-glucosyltransfera 100.0 6.1E-53 1.3E-57 413.0 42.2 422 1-429 16-481 (482)
11 PLN02555 limonoid glucosyltran 100.0 1.6E-52 3.6E-57 405.0 41.6 415 1-429 18-470 (480)
12 PLN02210 UDP-glucosyl transfer 100.0 1.5E-52 3.2E-57 405.5 41.2 401 1-427 19-454 (456)
13 PLN03015 UDP-glucosyl transfer 100.0 8.5E-52 1.9E-56 396.5 42.8 412 1-426 14-466 (470)
14 PLN00164 glucosyltransferase; 100.0 1.7E-51 3.6E-56 400.7 42.5 414 1-429 14-474 (480)
15 PLN03004 UDP-glycosyltransfera 100.0 8E-52 1.7E-56 397.2 39.1 398 1-413 14-440 (451)
16 PLN02562 UDP-glycosyltransfera 100.0 1.7E-51 3.7E-56 397.8 41.3 392 1-426 17-447 (448)
17 PLN02448 UDP-glycosyltransfera 100.0 1.7E-51 3.7E-56 400.9 40.4 399 1-429 21-458 (459)
18 PLN02207 UDP-glycosyltransfera 100.0 3.3E-51 7.2E-56 394.1 41.5 411 1-429 14-466 (468)
19 PLN02152 indole-3-acetate beta 100.0 1.4E-50 3E-55 389.1 41.2 407 1-426 14-454 (455)
20 PLN02554 UDP-glycosyltransfera 100.0 2.3E-50 5.1E-55 394.3 40.6 410 1-428 13-478 (481)
21 PLN02167 UDP-glycosyltransfera 100.0 4.6E-50 9.9E-55 391.6 40.8 411 1-428 14-472 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 5.7E-46 1.2E-50 364.4 29.5 388 1-430 32-468 (507)
23 TIGR01426 MGT glycosyltransfer 100.0 6.5E-45 1.4E-49 352.0 30.4 373 1-427 6-390 (392)
24 PF00201 UDPGT: UDP-glucoronos 100.0 1.1E-45 2.5E-50 368.6 4.6 385 1-428 10-443 (500)
25 cd03784 GT1_Gtf_like This fami 100.0 8.7E-42 1.9E-46 331.7 25.4 370 1-425 11-400 (401)
26 COG1819 Glycosyl transferases, 100.0 1.1E-40 2.3E-45 318.7 22.5 379 1-432 12-404 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 3.7E-35 8E-40 293.0 20.8 385 1-415 16-440 (496)
28 PRK12446 undecaprenyldiphospho 100.0 5.6E-28 1.2E-32 228.3 29.4 310 2-406 13-335 (352)
29 COG0707 MurG UDP-N-acetylgluco 100.0 3.5E-26 7.5E-31 213.3 28.0 333 2-430 12-355 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 2.1E-25 4.6E-30 209.9 24.8 296 1-391 12-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.6E-23 3.5E-28 196.7 24.4 294 1-393 11-313 (321)
32 PRK00726 murG undecaprenyldiph 99.9 2.4E-18 5.3E-23 164.6 31.6 329 2-426 13-354 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.7E-18 3.6E-23 165.4 28.9 308 2-403 11-330 (350)
34 COG4671 Predicted glycosyl tra 99.8 6.7E-17 1.5E-21 143.8 22.3 332 1-393 22-364 (400)
35 TIGR00215 lpxB lipid-A-disacch 99.8 2.3E-17 4.9E-22 158.3 20.1 337 2-422 17-381 (385)
36 TIGR01133 murG undecaprenyldip 99.8 5.7E-16 1.2E-20 147.7 28.1 312 2-413 12-334 (348)
37 TIGR03590 PseG pseudaminic aci 99.7 7.1E-16 1.5E-20 141.2 22.7 250 1-360 14-278 (279)
38 PRK13609 diacylglycerol glucos 99.7 1.7E-15 3.7E-20 146.1 24.4 146 235-403 196-344 (380)
39 PLN02605 monogalactosyldiacylg 99.7 4.8E-14 1E-18 135.9 26.0 271 85-428 88-377 (382)
40 PRK00025 lpxB lipid-A-disaccha 99.6 6.8E-14 1.5E-18 135.1 22.5 339 2-427 13-375 (380)
41 TIGR03492 conserved hypothetic 99.6 8.9E-13 1.9E-17 126.7 26.5 353 4-425 10-394 (396)
42 PRK13608 diacylglycerol glucos 99.6 4.2E-13 9.1E-18 129.6 23.3 239 86-394 93-338 (391)
43 PF04101 Glyco_tran_28_C: Glyc 99.5 8.6E-16 1.9E-20 130.1 0.4 136 243-394 1-144 (167)
44 cd03814 GT1_like_2 This family 99.5 1.1E-10 2.4E-15 111.5 32.7 314 2-405 15-340 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.4 8E-10 1.7E-14 109.5 32.1 320 5-408 78-415 (465)
46 cd03800 GT1_Sucrose_synthase T 99.3 1.6E-08 3.5E-13 98.1 33.3 330 2-394 22-368 (398)
47 PRK05749 3-deoxy-D-manno-octul 99.3 4.4E-09 9.5E-14 103.1 28.8 69 316-394 315-388 (425)
48 PF04007 DUF354: Protein of un 99.3 4.6E-09 1E-13 97.4 26.8 289 3-393 12-309 (335)
49 cd03823 GT1_ExpE7_like This fa 99.3 1.5E-08 3.3E-13 96.4 30.8 300 2-394 16-329 (359)
50 cd03794 GT1_wbuB_like This fam 99.3 1.2E-08 2.6E-13 98.0 30.2 326 2-394 15-365 (394)
51 PF03033 Glyco_transf_28: Glyc 99.3 2.9E-12 6.2E-17 105.1 4.0 113 1-132 9-135 (139)
52 PRK10307 putative glycosyl tra 99.3 3.2E-08 7E-13 96.6 33.0 96 304-409 284-389 (412)
53 cd03816 GT1_ALG1_like This fam 99.2 5E-08 1.1E-12 95.2 32.9 91 304-408 294-399 (415)
54 COG3980 spsG Spore coat polysa 99.2 2.3E-09 5.1E-14 93.4 20.2 279 1-406 15-302 (318)
55 cd03786 GT1_UDP-GlcNAc_2-Epime 99.2 3.7E-10 8E-15 108.4 16.8 160 240-426 197-362 (363)
56 cd03798 GT1_wlbH_like This fam 99.2 1E-07 2.2E-12 90.9 32.1 313 2-394 15-344 (377)
57 cd03817 GT1_UGDG_like This fam 99.2 3.1E-08 6.7E-13 94.7 28.4 312 2-394 15-343 (374)
58 TIGR03449 mycothiol_MshA UDP-N 99.2 3E-07 6.6E-12 89.6 35.0 94 303-408 282-383 (405)
59 cd03801 GT1_YqgM_like This fam 99.2 1.2E-07 2.6E-12 90.1 31.5 310 2-394 15-341 (374)
60 cd04962 GT1_like_5 This family 99.2 1.4E-07 3E-12 90.7 32.1 307 2-394 13-336 (371)
61 cd03818 GT1_ExpC_like This fam 99.2 1.3E-07 2.8E-12 91.9 32.0 80 303-394 280-366 (396)
62 cd03819 GT1_WavL_like This fam 99.2 1.3E-07 2.7E-12 90.3 31.5 313 6-410 15-348 (355)
63 cd03808 GT1_cap1E_like This fa 99.2 1.6E-07 3.5E-12 89.0 32.0 304 2-394 11-329 (359)
64 cd03820 GT1_amsD_like This fam 99.1 1.8E-07 3.9E-12 88.3 29.5 308 2-407 14-329 (348)
65 cd03796 GT1_PIG-A_like This fa 99.1 3.2E-07 7E-12 89.2 29.2 78 303-394 249-333 (398)
66 cd03795 GT1_like_4 This family 99.1 3.3E-07 7.2E-12 87.4 28.8 130 242-394 191-332 (357)
67 PRK14089 ipid-A-disaccharide s 99.0 4.4E-08 9.5E-13 91.7 20.9 190 207-425 143-346 (347)
68 TIGR00236 wecB UDP-N-acetylglu 99.0 2.5E-08 5.5E-13 95.7 19.1 331 4-427 13-362 (365)
69 cd03807 GT1_WbnK_like This fam 99.0 1.7E-06 3.8E-11 82.1 31.5 77 304-394 251-332 (365)
70 cd04951 GT1_WbdM_like This fam 99.0 7.3E-07 1.6E-11 85.1 28.3 108 303-426 244-357 (360)
71 COG1519 KdtA 3-deoxy-D-manno-o 99.0 1.8E-06 3.9E-11 80.6 28.9 302 2-394 60-386 (419)
72 cd03805 GT1_ALG2_like This fam 98.9 1.6E-06 3.6E-11 84.0 28.6 80 302-394 278-364 (392)
73 TIGR02472 sucr_P_syn_N sucrose 98.9 6.1E-06 1.3E-10 81.2 32.7 82 303-394 316-406 (439)
74 cd03822 GT1_ecORF704_like This 98.9 5.6E-06 1.2E-10 79.0 31.8 80 302-394 245-334 (366)
75 cd05844 GT1_like_7 Glycosyltra 98.9 1.4E-06 3.1E-11 83.5 26.6 80 303-394 244-336 (367)
76 cd03821 GT1_Bme6_like This fam 98.9 3.6E-06 7.7E-11 80.3 28.9 79 302-394 260-345 (375)
77 cd04955 GT1_like_6 This family 98.9 1.7E-06 3.6E-11 82.8 26.5 77 302-394 246-330 (363)
78 PLN02275 transferase, transfer 98.9 3.5E-06 7.5E-11 81.0 28.5 75 304-392 286-371 (371)
79 cd03811 GT1_WabH_like This fam 98.9 3.4E-06 7.5E-11 79.5 28.4 303 2-393 13-331 (353)
80 PRK09922 UDP-D-galactose:(gluc 98.9 8.3E-07 1.8E-11 85.0 24.0 166 242-426 180-356 (359)
81 cd03799 GT1_amsK_like This is 98.9 6.3E-06 1.4E-10 78.5 29.8 81 302-394 234-327 (355)
82 cd03825 GT1_wcfI_like This fam 98.9 7.8E-06 1.7E-10 78.2 29.7 81 302-394 242-330 (365)
83 TIGR03088 stp2 sugar transfera 98.8 2.3E-05 5E-10 75.5 31.8 79 304-394 255-338 (374)
84 TIGR03568 NeuC_NnaA UDP-N-acet 98.8 1.5E-06 3.4E-11 82.9 23.2 250 80-393 76-338 (365)
85 cd03812 GT1_CapH_like This fam 98.8 9.1E-06 2E-10 77.6 27.8 80 302-394 247-331 (358)
86 PRK01021 lpxB lipid-A-disaccha 98.8 6.8E-06 1.5E-10 81.1 26.8 341 18-423 226-603 (608)
87 cd03806 GT1_ALG11_like This fa 98.8 1E-05 2.2E-10 79.1 28.3 79 303-394 304-392 (419)
88 TIGR03087 stp1 sugar transfera 98.8 3.8E-06 8.2E-11 81.6 25.2 79 302-394 278-362 (397)
89 cd03809 GT1_mtfB_like This fam 98.8 2.7E-06 5.9E-11 81.1 23.6 90 302-408 251-347 (365)
90 PF02684 LpxB: Lipid-A-disacch 98.8 3.1E-06 6.7E-11 79.9 22.6 249 85-394 70-340 (373)
91 TIGR02149 glgA_Coryne glycogen 98.7 3.3E-05 7.2E-10 74.7 29.5 84 305-394 261-352 (388)
92 PRK15179 Vi polysaccharide bio 98.7 6.5E-05 1.4E-09 77.0 29.9 97 302-408 572-674 (694)
93 PLN02949 transferase, transfer 98.6 6.1E-05 1.3E-09 74.1 28.5 110 303-426 334-457 (463)
94 cd03802 GT1_AviGT4_like This f 98.6 3.6E-05 7.8E-10 72.7 25.8 128 243-393 172-307 (335)
95 cd03792 GT1_Trehalose_phosphor 98.6 6.5E-05 1.4E-09 72.3 27.4 79 302-394 250-337 (372)
96 TIGR02468 sucrsPsyn_pln sucros 98.6 0.00013 2.7E-09 77.0 30.8 96 303-408 547-652 (1050)
97 PF02350 Epimerase_2: UDP-N-ac 98.6 1.4E-06 2.9E-11 82.4 14.3 252 80-393 50-317 (346)
98 PRK15427 colanic acid biosynth 98.5 0.00021 4.6E-09 69.5 28.0 93 303-407 278-385 (406)
99 cd03791 GT1_Glycogen_synthase_ 98.5 9.7E-05 2.1E-09 73.6 26.3 83 303-393 350-441 (476)
100 PRK15484 lipopolysaccharide 1, 98.5 0.00057 1.2E-08 65.9 29.7 81 303-394 256-344 (380)
101 cd04950 GT1_like_1 Glycosyltra 98.5 0.001 2.2E-08 64.1 31.3 105 302-426 252-369 (373)
102 KOG3349 Predicted glycosyltran 98.5 1.2E-06 2.6E-11 69.0 8.7 119 242-371 4-133 (170)
103 TIGR02095 glgA glycogen/starch 98.4 0.00032 7E-09 69.8 28.2 83 303-393 345-436 (473)
104 PLN02846 digalactosyldiacylgly 98.4 0.00046 1E-08 67.3 27.4 72 308-394 288-363 (462)
105 cd03804 GT1_wbaZ_like This fam 98.4 5.6E-05 1.2E-09 72.1 21.0 124 244-394 197-326 (351)
106 COG0763 LpxB Lipid A disacchar 98.3 0.0002 4.4E-09 66.4 21.6 208 207-426 155-378 (381)
107 PRK00654 glgA glycogen synthas 98.3 0.00091 2E-08 66.4 27.9 70 316-393 352-427 (466)
108 PRK09814 beta-1,6-galactofuran 98.3 0.00055 1.2E-08 64.8 25.1 109 302-423 205-330 (333)
109 COG0381 WecB UDP-N-acetylgluco 98.3 0.00026 5.7E-09 65.8 20.5 336 5-428 17-370 (383)
110 COG1817 Uncharacterized protei 98.2 0.0017 3.7E-08 58.2 24.4 103 3-130 12-116 (346)
111 PLN00142 sucrose synthase 98.2 0.0014 3E-08 67.8 26.0 59 324-392 668-730 (815)
112 PLN02316 synthase/transferase 98.1 0.016 3.4E-07 61.8 33.0 82 304-393 900-997 (1036)
113 cd03813 GT1_like_3 This family 98.1 0.0031 6.7E-08 62.8 26.2 80 303-394 353-442 (475)
114 TIGR02918 accessory Sec system 98.0 0.0022 4.7E-08 64.0 23.5 104 303-411 375-484 (500)
115 cd04946 GT1_AmsK_like This fam 98.0 0.0058 1.2E-07 59.6 25.9 98 302-408 287-392 (407)
116 PF13844 Glyco_transf_41: Glyc 98.0 0.00021 4.6E-09 69.1 14.5 161 240-415 283-449 (468)
117 cd04949 GT1_gtfA_like This fam 98.0 0.0026 5.6E-08 61.1 22.3 98 303-411 260-363 (372)
118 PRK14098 glycogen synthase; Pr 97.9 0.015 3.3E-07 57.9 27.5 81 303-393 361-450 (489)
119 COG5017 Uncharacterized conser 97.9 0.00021 4.6E-09 55.5 10.4 109 244-372 2-123 (161)
120 PRK10125 putative glycosyl tra 97.9 0.019 4.1E-07 55.8 26.4 115 244-389 243-366 (405)
121 TIGR02470 sucr_synth sucrose s 97.8 0.054 1.2E-06 56.3 34.2 80 303-392 618-707 (784)
122 cd01635 Glycosyltransferase_GT 97.8 0.0023 4.9E-08 56.3 17.8 51 302-353 159-216 (229)
123 PLN02501 digalactosyldiacylgly 97.7 0.012 2.6E-07 59.4 22.2 75 305-394 602-681 (794)
124 PRK15490 Vi polysaccharide bio 97.6 0.076 1.7E-06 52.8 26.2 64 303-372 454-522 (578)
125 PF00534 Glycos_transf_1: Glyc 97.5 0.0036 7.8E-08 52.8 13.3 80 302-393 71-157 (172)
126 TIGR02193 heptsyl_trn_I lipopo 97.4 0.034 7.4E-07 52.2 20.6 140 234-392 172-319 (319)
127 PRK10017 colanic acid biosynth 97.4 0.17 3.6E-06 49.4 26.5 181 231-426 224-422 (426)
128 PF06258 Mito_fiss_Elm1: Mitoc 97.2 0.031 6.7E-07 51.9 17.4 58 313-371 221-281 (311)
129 KOG1387 Glycosyltransferase [C 97.2 0.17 3.7E-06 46.4 21.2 311 75-427 129-460 (465)
130 KOG4626 O-linked N-acetylgluco 97.2 0.0054 1.2E-07 60.0 11.8 141 240-393 757-903 (966)
131 PF13477 Glyco_trans_4_2: Glyc 97.0 0.0079 1.7E-07 48.7 10.3 92 7-127 13-108 (139)
132 PF13579 Glyco_trans_4_4: Glyc 96.9 0.0023 5E-08 52.8 6.5 96 6-127 6-105 (160)
133 PLN02939 transferase, transfer 96.8 0.9 2E-05 48.2 28.4 83 303-393 836-930 (977)
134 cd03788 GT1_TPS Trehalose-6-Ph 96.4 1.2 2.7E-05 44.1 22.0 103 308-426 345-459 (460)
135 PRK14099 glycogen synthase; Pr 96.3 1.4 3E-05 44.0 30.8 66 322-393 369-446 (485)
136 PF13692 Glyco_trans_1_4: Glyc 96.2 0.015 3.2E-07 46.8 6.5 78 304-393 53-134 (135)
137 PHA01633 putative glycosyl tra 96.1 1.3 2.9E-05 41.6 21.2 83 303-393 200-306 (335)
138 PHA01630 putative group 1 glyc 95.9 0.45 9.8E-06 44.9 15.8 107 311-426 197-327 (331)
139 PF06722 DUF1205: Protein of u 95.7 0.015 3.3E-07 43.5 4.1 54 227-280 26-84 (97)
140 PRK10422 lipopolysaccharide co 95.7 2 4.3E-05 40.9 19.8 95 1-123 16-113 (352)
141 PF13439 Glyco_transf_4: Glyco 95.6 0.064 1.4E-06 44.9 8.0 96 6-130 17-113 (177)
142 PLN03063 alpha,alpha-trehalose 95.5 3.1 6.7E-05 44.3 21.7 104 311-429 363-478 (797)
143 TIGR02201 heptsyl_trn_III lipo 95.5 2.3 5E-05 40.3 19.3 96 1-123 10-108 (344)
144 PF13524 Glyco_trans_1_2: Glyc 95.2 0.22 4.7E-06 36.9 8.9 79 329-423 9-91 (92)
145 KOG1111 N-acetylglucosaminyltr 94.8 3.5 7.7E-05 38.4 16.9 97 8-126 22-122 (426)
146 COG3914 Spy Predicted O-linked 94.7 0.95 2.1E-05 44.7 13.6 125 239-370 427-560 (620)
147 PF12000 Glyco_trans_4_3: Gkyc 94.5 0.81 1.8E-05 38.3 11.2 95 16-127 1-97 (171)
148 TIGR02195 heptsyl_trn_II lipop 94.1 5.3 0.00012 37.6 20.0 92 2-122 11-104 (334)
149 PF08660 Alg14: Oligosaccharid 93.8 0.45 9.8E-06 39.9 8.6 111 2-128 9-131 (170)
150 PRK10964 ADP-heptose:LPS hepto 93.5 6.7 0.00015 36.7 20.5 132 241-393 178-321 (322)
151 TIGR02400 trehalose_OtsA alpha 93.2 9.5 0.00021 37.7 27.0 103 308-426 340-454 (456)
152 cd03789 GT1_LPS_heptosyltransf 93.1 6.7 0.00015 35.8 17.4 93 1-122 10-104 (279)
153 PF02571 CbiJ: Precorrin-6x re 92.9 6.8 0.00015 35.2 15.0 98 229-348 119-225 (249)
154 PF01975 SurE: Survival protei 92.3 0.25 5.3E-06 42.5 4.9 108 7-129 16-136 (196)
155 PRK10916 ADP-heptose:LPS hepto 92.3 10 0.00023 35.9 21.6 94 1-123 11-106 (348)
156 KOG2941 Beta-1,4-mannosyltrans 91.0 13 0.00029 34.6 28.3 154 239-415 252-431 (444)
157 PRK14501 putative bifunctional 90.6 26 0.00055 37.2 20.7 107 307-429 345-463 (726)
158 PRK12342 hypothetical protein; 89.5 3.2 7E-05 37.3 9.4 39 89-127 101-145 (254)
159 COG4370 Uncharacterized protei 89.4 1.4 3.1E-05 39.9 6.9 104 310-428 301-409 (412)
160 COG0496 SurE Predicted acid ph 89.2 2.8 6.1E-05 37.3 8.6 100 7-129 16-128 (252)
161 PF07429 Glyco_transf_56: 4-al 88.1 14 0.00031 34.6 12.6 82 304-393 245-332 (360)
162 PRK02797 4-alpha-L-fucosyltran 88.0 16 0.00034 33.7 12.7 81 304-392 206-292 (322)
163 TIGR03713 acc_sec_asp1 accesso 87.7 2.5 5.3E-05 42.5 8.3 91 304-411 409-506 (519)
164 PF06925 MGDG_synth: Monogalac 87.6 1.9 4.1E-05 36.2 6.4 45 83-127 75-125 (169)
165 PF02142 MGS: MGS-like domain 87.2 0.73 1.6E-05 34.5 3.3 85 7-123 2-95 (95)
166 TIGR00715 precor6x_red precorr 86.8 4.4 9.5E-05 36.6 8.6 81 7-126 12-100 (256)
167 COG0859 RfaF ADP-heptose:LPS h 86.7 29 0.00062 32.8 19.4 94 1-123 12-107 (334)
168 smart00851 MGS MGS-like domain 85.5 6.4 0.00014 28.9 7.6 79 7-122 2-89 (90)
169 cd00532 MGS-like MGS-like doma 85.5 5.8 0.00013 30.6 7.7 83 5-124 12-105 (112)
170 TIGR02398 gluc_glyc_Psyn gluco 85.4 24 0.00052 35.2 13.6 107 306-428 364-482 (487)
171 PRK03359 putative electron tra 84.8 8.5 0.00018 34.7 9.3 39 89-127 104-148 (256)
172 cd01424 MGS_CPS_II Methylglyox 84.6 9.4 0.0002 29.3 8.5 81 5-123 13-100 (110)
173 PF04464 Glyphos_transf: CDP-G 84.6 2.7 5.8E-05 40.3 6.6 113 302-427 250-368 (369)
174 PF05159 Capsule_synth: Capsul 84.3 8.1 0.00018 35.1 9.4 42 305-349 184-225 (269)
175 COG3660 Predicted nucleoside-d 82.9 35 0.00076 30.7 15.1 37 310-348 234-271 (329)
176 PF09314 DUF1972: Domain of un 82.0 31 0.00067 29.4 15.2 40 9-53 25-64 (185)
177 PF08323 Glyco_transf_5: Starc 81.9 6.4 0.00014 35.3 7.5 22 7-28 22-43 (245)
178 cd01423 MGS_CPS_I_III Methylgl 80.5 8.5 0.00019 29.8 6.9 84 6-123 14-106 (116)
179 PF04413 Glycos_transf_N: 3-De 78.7 10 0.00022 32.3 7.4 91 2-127 32-127 (186)
180 COG0438 RfaG Glycosyltransfera 78.2 54 0.0012 29.9 16.8 80 303-394 256-342 (381)
181 COG0052 RpsB Ribosomal protein 78.0 19 0.0004 31.9 8.6 32 98-129 157-190 (252)
182 PRK02155 ppnK NAD(+)/NADH kina 76.5 19 0.00041 33.2 8.9 52 323-394 64-119 (291)
183 PF01075 Glyco_transf_9: Glyco 76.4 13 0.00029 33.0 7.9 97 240-348 104-208 (247)
184 PRK13933 stationary phase surv 76.2 20 0.00044 32.2 8.7 27 7-34 16-42 (253)
185 PRK04885 ppnK inorganic polyph 74.6 6.8 0.00015 35.5 5.4 52 323-394 36-93 (265)
186 cd03793 GT1_Glycogen_synthase_ 74.4 14 0.00031 37.3 7.9 76 315-394 469-552 (590)
187 PRK13932 stationary phase surv 74.1 31 0.00068 31.1 9.3 28 7-35 21-48 (257)
188 PRK13934 stationary phase surv 73.9 38 0.00081 30.7 9.8 27 7-34 16-42 (266)
189 PRK00346 surE 5'(3')-nucleotid 73.8 40 0.00086 30.3 9.9 28 7-35 16-43 (250)
190 cd01974 Nitrogenase_MoFe_beta 72.6 18 0.00038 35.7 8.2 36 87-125 367-402 (435)
191 PRK07313 phosphopantothenoylcy 72.0 61 0.0013 27.5 11.2 52 342-393 113-179 (182)
192 TIGR00087 surE 5'/3'-nucleotid 71.8 41 0.00088 30.1 9.5 28 7-35 16-43 (244)
193 COG1618 Predicted nucleotide k 71.5 13 0.00029 30.7 5.7 91 3-106 18-109 (179)
194 PRK13935 stationary phase surv 70.7 45 0.00097 30.0 9.5 28 7-35 16-43 (253)
195 PRK02649 ppnK inorganic polyph 69.6 9.7 0.00021 35.3 5.3 53 322-394 68-124 (305)
196 PRK14077 pnk inorganic polypho 69.3 11 0.00023 34.8 5.4 52 323-394 65-120 (287)
197 PRK08057 cobalt-precorrin-6x r 68.9 45 0.00098 29.9 9.2 40 87-126 55-100 (248)
198 TIGR01285 nifN nitrogenase mol 68.4 36 0.00078 33.5 9.3 35 88-125 364-398 (432)
199 KOG0853 Glycosyltransferase [C 68.3 7.3 0.00016 38.4 4.3 88 333-431 380-473 (495)
200 PRK12446 undecaprenyldiphospho 66.9 35 0.00076 32.4 8.7 33 317-349 86-121 (352)
201 PF02585 PIG-L: GlcNAc-PI de-N 66.9 32 0.0007 27.0 7.3 22 83-104 86-107 (128)
202 PRK13931 stationary phase surv 65.7 66 0.0014 29.1 9.6 98 7-126 16-129 (261)
203 PRK04539 ppnK inorganic polyph 65.5 12 0.00027 34.5 5.1 52 323-394 69-124 (296)
204 PRK03372 ppnK inorganic polyph 65.2 13 0.00029 34.5 5.2 53 322-394 72-128 (306)
205 PRK01911 ppnK inorganic polyph 64.9 14 0.0003 34.1 5.3 52 323-394 65-120 (292)
206 TIGR02919 accessory Sec system 64.0 34 0.00073 33.7 8.1 87 303-405 327-420 (438)
207 PRK10117 trehalose-6-phosphate 64.0 92 0.002 31.0 11.0 106 310-429 338-454 (474)
208 COG0503 Apt Adenine/guanine ph 63.6 21 0.00045 30.2 5.8 38 88-125 44-83 (179)
209 PRK03378 ppnK inorganic polyph 62.5 16 0.00035 33.7 5.2 52 323-394 64-119 (292)
210 PLN03064 alpha,alpha-trehalose 61.7 1E+02 0.0022 33.6 11.6 103 310-428 446-561 (934)
211 TIGR00725 conserved hypothetic 61.4 67 0.0014 26.6 8.3 99 228-350 20-123 (159)
212 PRK01185 ppnK inorganic polyph 60.5 19 0.00041 32.8 5.3 52 323-394 53-105 (271)
213 COG4394 Uncharacterized protei 60.5 1.4E+02 0.003 27.4 12.7 112 304-426 238-368 (370)
214 PRK03501 ppnK inorganic polyph 60.5 20 0.00043 32.5 5.4 53 323-394 40-97 (264)
215 PF04127 DFP: DNA / pantothena 60.5 17 0.00038 30.9 4.8 21 8-28 33-53 (185)
216 PRK14075 pnk inorganic polypho 60.5 19 0.00042 32.5 5.3 53 322-394 41-94 (256)
217 PRK12311 rpsB 30S ribosomal pr 60.2 1.1E+02 0.0024 28.7 10.2 32 97-128 152-185 (326)
218 PRK06718 precorrin-2 dehydroge 59.2 1.2E+02 0.0026 26.2 12.6 149 241-413 11-164 (202)
219 PF00731 AIRC: AIR carboxylase 58.8 1E+02 0.0022 25.3 11.3 138 243-413 2-148 (150)
220 PF00982 Glyco_transf_20: Glyc 58.4 1.3E+02 0.0028 30.0 11.1 107 307-427 356-473 (474)
221 PF09001 DUF1890: Domain of un 57.7 7.4 0.00016 30.9 1.9 30 6-35 15-44 (139)
222 PF02951 GSH-S_N: Prokaryotic 57.7 10 0.00022 29.6 2.7 22 6-27 19-40 (119)
223 PRK09219 xanthine phosphoribos 57.6 26 0.00056 30.0 5.3 42 85-126 38-81 (189)
224 PF03808 Glyco_tran_WecB: Glyc 56.8 1.2E+02 0.0025 25.4 11.3 63 183-250 49-111 (172)
225 PRK01231 ppnK inorganic polyph 55.4 26 0.00056 32.4 5.3 52 323-394 63-118 (295)
226 PRK02910 light-independent pro 55.3 21 0.00045 36.1 5.1 36 87-125 352-387 (519)
227 PLN02929 NADH kinase 55.0 23 0.00049 32.7 4.8 65 322-394 64-137 (301)
228 cd01141 TroA_d Periplasmic bin 54.7 22 0.00048 30.0 4.6 35 91-125 63-99 (186)
229 cd01965 Nitrogenase_MoFe_beta_ 54.6 21 0.00045 35.1 4.9 36 87-125 361-396 (428)
230 cd01425 RPS2 Ribosomal protein 54.6 1.4E+02 0.003 25.6 10.3 32 97-128 127-160 (193)
231 CHL00076 chlB photochlorophyll 54.6 20 0.00043 36.1 4.8 36 87-125 364-399 (513)
232 cd01421 IMPCH Inosine monophos 54.3 34 0.00073 29.1 5.3 35 7-50 13-47 (187)
233 TIGR01286 nifK nitrogenase mol 54.2 23 0.00051 35.6 5.2 36 87-125 427-462 (515)
234 TIGR01278 DPOR_BchB light-inde 54.0 24 0.00051 35.6 5.3 37 87-126 354-390 (511)
235 PF10083 DUF2321: Uncharacteri 53.8 37 0.0008 27.6 5.2 71 348-428 78-151 (158)
236 cd03466 Nitrogenase_NifN_2 Nit 53.5 24 0.00053 34.6 5.2 36 87-125 362-397 (429)
237 PRK03708 ppnK inorganic polyph 53.2 25 0.00054 32.2 4.8 52 323-394 58-112 (277)
238 cd01981 Pchlide_reductase_B Pc 52.6 24 0.00052 34.7 5.0 37 87-126 360-396 (430)
239 PRK05234 mgsA methylglyoxal sy 52.3 1.1E+02 0.0024 24.7 8.0 88 5-129 17-117 (142)
240 COG1797 CobB Cobyrinic acid a, 52.2 46 0.00099 32.3 6.4 27 107-133 100-126 (451)
241 PF07355 GRDB: Glycine/sarcosi 51.8 38 0.00082 31.8 5.7 46 80-125 63-118 (349)
242 TIGR02329 propionate_PrpR prop 51.8 95 0.0021 31.4 9.1 38 87-127 135-172 (526)
243 cd01976 Nitrogenase_MoFe_alpha 51.6 21 0.00045 35.0 4.3 37 86-125 358-394 (421)
244 PF02558 ApbA: Ketopantoate re 51.5 14 0.0003 30.0 2.7 34 9-49 12-45 (151)
245 PF00282 Pyridoxal_deC: Pyrido 51.4 36 0.00078 32.7 5.9 70 323-393 104-190 (373)
246 COG2874 FlaH Predicted ATPases 51.1 21 0.00045 31.1 3.7 84 7-110 45-136 (235)
247 PRK04148 hypothetical protein; 50.8 34 0.00074 27.3 4.7 16 9-24 30-45 (134)
248 PRK14076 pnk inorganic polypho 50.7 29 0.00064 35.4 5.4 53 322-394 348-404 (569)
249 TIGR01470 cysG_Nterm siroheme 50.3 1.7E+02 0.0037 25.3 10.0 148 241-413 10-164 (205)
250 PLN02935 Bifunctional NADH kin 49.0 36 0.00077 33.8 5.3 53 322-394 262-318 (508)
251 TIGR01744 XPRTase xanthine pho 48.9 44 0.00094 28.7 5.4 42 84-125 37-80 (191)
252 TIGR00696 wecB_tagA_cpsF bacte 48.6 1.1E+02 0.0023 25.9 7.6 62 183-250 49-110 (177)
253 TIGR02853 spore_dpaA dipicolin 48.0 56 0.0012 30.1 6.3 105 5-125 11-120 (287)
254 KOG0780 Signal recognition par 47.8 64 0.0014 30.9 6.5 48 2-49 113-161 (483)
255 TIGR00730 conserved hypothetic 47.6 1.7E+02 0.0037 24.7 9.1 51 316-366 91-153 (178)
256 PLN02293 adenine phosphoribosy 47.6 58 0.0013 27.8 5.9 44 82-125 47-92 (187)
257 TIGR00745 apbA_panE 2-dehydrop 47.4 18 0.0004 33.1 3.1 34 9-49 5-38 (293)
258 PF02571 CbiJ: Precorrin-6x re 47.3 1.5E+02 0.0032 26.7 8.7 103 8-125 119-226 (249)
259 PLN02470 acetolactate synthase 47.1 1.7E+02 0.0038 30.0 10.4 92 247-349 2-109 (585)
260 cd01980 Chlide_reductase_Y Chl 46.7 34 0.00073 33.5 5.0 33 91-126 344-376 (416)
261 PRK00039 ruvC Holliday junctio 46.0 66 0.0014 26.8 5.9 48 82-129 46-108 (164)
262 PRK13982 bifunctional SbtC-lik 45.8 31 0.00066 34.2 4.4 21 8-28 286-306 (475)
263 PF01497 Peripla_BP_2: Peripla 45.7 33 0.00072 30.1 4.5 38 91-128 54-93 (238)
264 cd07035 TPP_PYR_POX_like Pyrim 44.7 1.7E+02 0.0036 23.7 10.5 27 323-349 60-92 (155)
265 cd06533 Glyco_transf_WecG_TagA 44.7 1.9E+02 0.004 24.2 10.6 63 183-250 47-109 (171)
266 PRK02231 ppnK inorganic polyph 44.6 45 0.00097 30.4 5.0 51 323-393 43-97 (272)
267 PF10649 DUF2478: Protein of u 44.1 1.9E+02 0.004 24.0 10.2 109 8-129 17-134 (159)
268 TIGR02015 BchY chlorophyllide 44.1 31 0.00068 33.7 4.3 32 91-125 349-380 (422)
269 cd07039 TPP_PYR_POX Pyrimidine 43.5 1.9E+02 0.0041 23.9 10.6 27 323-349 64-96 (164)
270 PRK06849 hypothetical protein; 43.3 79 0.0017 30.5 7.0 23 6-28 16-38 (389)
271 TIGR01918 various_sel_PB selen 43.3 1.1E+02 0.0023 29.7 7.4 51 84-134 323-380 (431)
272 TIGR03878 thermo_KaiC_2 KaiC d 43.0 80 0.0017 28.5 6.5 26 6-31 52-77 (259)
273 PF00289 CPSase_L_chain: Carba 42.9 94 0.002 23.8 5.9 83 257-370 12-104 (110)
274 PRK14476 nitrogenase molybdenu 42.9 1.5E+02 0.0033 29.4 8.9 32 89-125 365-396 (455)
275 COG3195 Uncharacterized protei 42.5 1.2E+02 0.0026 25.1 6.5 77 332-412 87-164 (176)
276 TIGR02655 circ_KaiC circadian 42.5 60 0.0013 32.5 6.1 98 6-128 279-399 (484)
277 PRK04761 ppnK inorganic polyph 42.5 55 0.0012 29.3 5.2 28 323-350 26-57 (246)
278 TIGR01743 purR_Bsub pur operon 42.3 56 0.0012 29.7 5.2 40 86-125 117-158 (268)
279 TIGR01918 various_sel_PB selen 41.5 65 0.0014 31.1 5.7 44 82-125 61-114 (431)
280 cd01715 ETF_alpha The electron 41.5 64 0.0014 26.8 5.3 43 86-128 72-117 (168)
281 TIGR01917 gly_red_sel_B glycin 41.4 65 0.0014 31.2 5.7 44 82-125 61-114 (431)
282 PF05728 UPF0227: Uncharacteri 41.4 56 0.0012 27.9 4.9 44 87-130 47-93 (187)
283 PRK09213 pur operon repressor; 41.3 59 0.0013 29.6 5.3 41 86-126 119-161 (271)
284 PRK06732 phosphopantothenate-- 41.1 51 0.0011 29.2 4.8 20 8-27 30-49 (229)
285 TIGR01917 gly_red_sel_B glycin 40.9 1.3E+02 0.0029 29.1 7.6 51 85-135 324-381 (431)
286 PF04244 DPRP: Deoxyribodipyri 40.8 31 0.00068 30.4 3.3 26 3-28 47-72 (224)
287 cd01143 YvrC Periplasmic bindi 40.3 55 0.0012 27.7 4.9 37 91-127 54-91 (195)
288 COG1748 LYS9 Saccharopine dehy 40.3 1.3E+02 0.0028 29.0 7.6 86 8-130 14-104 (389)
289 PF13450 NAD_binding_8: NAD(P) 40.2 37 0.0008 23.3 3.0 21 8-28 9-29 (68)
290 cd01147 HemV-2 Metal binding p 40.2 47 0.001 29.8 4.6 37 91-127 68-107 (262)
291 KOG0832 Mitochondrial/chloropl 40.0 99 0.0021 27.1 6.0 110 3-127 93-205 (251)
292 COG0003 ArsA Predicted ATPase 39.9 2.8E+02 0.006 26.1 9.6 35 86-122 114-148 (322)
293 TIGR00661 MJ1255 conserved hyp 39.8 63 0.0014 30.1 5.5 34 316-349 87-120 (321)
294 PF10093 DUF2331: Uncharacteri 39.5 3.5E+02 0.0077 26.0 25.5 41 304-347 244-287 (374)
295 PRK08558 adenine phosphoribosy 39.3 61 0.0013 28.9 5.0 40 86-125 100-141 (238)
296 PF03720 UDPG_MGDP_dh_C: UDP-g 39.2 38 0.00082 25.7 3.2 31 5-35 17-47 (106)
297 COG0859 RfaF ADP-heptose:LPS h 39.1 1.8E+02 0.0038 27.4 8.4 85 6-128 196-280 (334)
298 TIGR01284 alt_nitrog_alph nitr 38.9 31 0.00067 34.2 3.4 35 88-125 386-420 (457)
299 PRK00994 F420-dependent methyl 38.9 62 0.0013 28.5 4.7 41 89-129 52-98 (277)
300 TIGR01862 N2-ase-Ialpha nitrog 38.8 37 0.0008 33.5 3.9 36 87-125 377-412 (443)
301 cd00984 DnaB_C DnaB helicase C 38.8 2.5E+02 0.0055 24.6 9.1 30 6-35 29-59 (242)
302 COG0541 Ffh Signal recognition 38.6 1.2E+02 0.0025 29.7 6.9 48 2-49 112-160 (451)
303 cd01977 Nitrogenase_VFe_alpha 38.5 34 0.00074 33.4 3.6 33 89-124 350-382 (415)
304 COG0552 FtsY Signal recognitio 38.4 1.8E+02 0.0038 27.4 7.8 77 2-104 151-228 (340)
305 cd00561 CobA_CobO_BtuR ATP:cor 38.2 2.3E+02 0.005 23.4 10.1 84 4-106 16-104 (159)
306 PRK13810 orotate phosphoribosy 38.2 79 0.0017 27.0 5.3 40 86-125 62-103 (187)
307 TIGR00345 arsA arsenite-activa 38.1 1.2E+02 0.0026 27.9 6.9 24 8-31 3-26 (284)
308 TIGR00421 ubiX_pad polyprenyl 38.0 40 0.00088 28.6 3.5 29 7-35 15-43 (181)
309 PRK08305 spoVFB dipicolinate s 38.0 36 0.00078 29.3 3.2 29 7-35 22-50 (196)
310 COG2086 FixA Electron transfer 37.9 70 0.0015 28.9 5.1 40 88-127 102-147 (260)
311 PF02844 GARS_N: Phosphoribosy 37.8 40 0.00086 25.4 3.0 37 87-123 52-91 (100)
312 TIGR00355 purH phosphoribosyla 37.4 1.2E+02 0.0026 30.3 6.9 44 7-62 13-56 (511)
313 PF10820 DUF2543: Protein of u 37.3 1.2E+02 0.0026 20.9 4.9 42 384-430 36-79 (81)
314 PF02374 ArsA_ATPase: Anion-tr 37.3 2.3E+02 0.005 26.3 8.7 28 5-32 16-43 (305)
315 COG1066 Sms Predicted ATP-depe 36.9 40 0.00087 32.5 3.5 30 5-35 108-137 (456)
316 COG2159 Predicted metal-depend 36.7 1.3E+02 0.0028 27.8 6.9 111 210-338 98-210 (293)
317 cd03789 GT1_LPS_heptosyltransf 36.7 2.3E+02 0.005 25.6 8.7 87 5-127 140-226 (279)
318 TIGR03445 mycothiol_MshB 1D-my 36.6 1.2E+02 0.0027 27.8 6.7 19 85-103 111-129 (284)
319 PRK00881 purH bifunctional pho 36.4 1.3E+02 0.0027 30.2 7.0 35 7-50 17-51 (513)
320 KOG1344 Predicted histone deac 36.3 1.5E+02 0.0033 26.0 6.6 46 83-128 234-301 (324)
321 cd07025 Peptidase_S66 LD-Carbo 36.2 77 0.0017 29.1 5.3 71 255-349 47-119 (282)
322 cd08171 GlyDH-like2 Glycerol d 36.1 2.4E+02 0.0052 26.7 8.8 39 90-128 71-112 (345)
323 TIGR01283 nifE nitrogenase mol 35.9 55 0.0012 32.4 4.6 36 87-125 385-420 (456)
324 PF04558 tRNA_synt_1c_R1: Glut 35.9 43 0.00094 27.9 3.3 29 356-393 102-131 (164)
325 PRK10916 ADP-heptose:LPS hepto 35.8 2.1E+02 0.0045 27.0 8.4 32 91-126 257-288 (348)
326 PF02441 Flavoprotein: Flavopr 35.7 30 0.00066 27.3 2.3 31 5-35 14-44 (129)
327 PRK05595 replicative DNA helic 35.6 2.5E+02 0.0054 27.7 9.1 32 4-35 215-247 (444)
328 PRK09423 gldA glycerol dehydro 35.6 2.5E+02 0.0055 26.8 9.0 41 88-128 75-118 (366)
329 PLN02205 alpha,alpha-trehalose 35.3 3.4E+02 0.0074 29.5 10.6 108 307-428 419-551 (854)
330 TIGR01860 VNFD nitrogenase van 35.2 49 0.0011 32.8 4.1 31 89-122 389-419 (461)
331 PRK14478 nitrogenase molybdenu 35.1 52 0.0011 32.8 4.3 34 87-123 383-416 (475)
332 cd01985 ETF The electron trans 35.0 84 0.0018 26.4 5.1 41 87-127 81-124 (181)
333 COG0129 IlvD Dihydroxyacid deh 34.9 95 0.0021 31.4 5.9 44 86-129 109-156 (575)
334 PF00920 ILVD_EDD: Dehydratase 34.9 83 0.0018 31.5 5.5 50 82-131 64-117 (521)
335 PLN02727 NAD kinase 34.6 74 0.0016 34.2 5.3 53 322-394 743-799 (986)
336 TIGR01282 nifD nitrogenase mol 34.5 24 0.00052 35.0 1.8 36 87-125 394-429 (466)
337 cd01714 ETF_beta The electron 34.3 84 0.0018 27.1 5.0 39 87-125 98-142 (202)
338 PF01993 MTD: methylene-5,6,7, 34.3 1.1E+02 0.0024 27.1 5.5 40 90-129 52-97 (276)
339 COG4126 Hydantoin racemase [Am 34.1 1.9E+02 0.0041 25.4 6.8 38 86-123 163-202 (230)
340 KOG4417 Predicted endonuclease 34.0 1E+02 0.0023 26.5 5.1 31 95-125 113-150 (261)
341 PF01012 ETF: Electron transfe 34.0 70 0.0015 26.4 4.4 42 86-127 79-123 (164)
342 PF01075 Glyco_transf_9: Glyco 34.0 1.4E+02 0.003 26.4 6.7 84 6-128 125-212 (247)
343 PRK10422 lipopolysaccharide co 33.8 1.4E+02 0.003 28.3 6.9 32 91-126 258-289 (352)
344 cd01971 Nitrogenase_VnfN_like 33.8 77 0.0017 31.1 5.2 35 88-125 358-396 (427)
345 PRK05920 aromatic acid decarbo 33.8 47 0.001 28.8 3.3 31 5-35 17-47 (204)
346 PRK06321 replicative DNA helic 33.6 4.2E+02 0.009 26.5 10.3 32 4-35 240-272 (472)
347 KOG1432 Predicted DNA repair e 33.0 70 0.0015 29.9 4.3 42 86-127 89-143 (379)
348 PF01372 Melittin: Melittin; 32.8 4.7 0.0001 21.2 -1.8 17 331-347 1-17 (26)
349 PF00070 Pyr_redox: Pyridine n 32.8 70 0.0015 22.5 3.6 24 6-29 10-33 (80)
350 COG1703 ArgK Putative periplas 32.7 96 0.0021 28.6 5.1 95 8-125 69-173 (323)
351 PF03641 Lysine_decarbox: Poss 32.6 2.2E+02 0.0048 22.6 6.8 51 316-366 48-111 (133)
352 PF09334 tRNA-synt_1g: tRNA sy 32.6 34 0.00075 33.1 2.5 27 2-28 17-46 (391)
353 PF05693 Glycogen_syn: Glycoge 32.6 66 0.0014 32.8 4.4 93 313-411 462-566 (633)
354 COG2910 Putative NADH-flavin r 32.5 43 0.00094 28.4 2.7 20 9-28 15-34 (211)
355 PRK07206 hypothetical protein; 32.5 1.6E+02 0.0035 28.6 7.3 35 87-121 60-96 (416)
356 PRK00911 dihydroxy-acid dehydr 32.4 1.3E+02 0.0029 30.4 6.4 45 85-129 97-145 (552)
357 TIGR02482 PFKA_ATP 6-phosphofr 32.3 51 0.0011 30.6 3.5 37 317-353 86-126 (301)
358 PRK05299 rpsB 30S ribosomal pr 32.2 3.8E+02 0.0083 24.2 9.5 32 97-128 157-190 (258)
359 PRK14106 murD UDP-N-acetylmura 32.2 2.4E+02 0.0052 27.7 8.5 21 8-28 18-38 (450)
360 COG3516 Predicted component of 32.1 1.4E+02 0.0031 24.6 5.5 57 363-428 92-149 (169)
361 COG0801 FolK 7,8-dihydro-6-hyd 32.1 99 0.0021 25.6 4.7 29 243-271 3-31 (160)
362 cd01840 SGNH_hydrolase_yrhL_li 31.6 1.3E+02 0.0028 24.3 5.5 37 241-278 51-87 (150)
363 PRK11914 diacylglycerol kinase 31.6 1.1E+02 0.0025 28.2 5.8 27 324-350 66-96 (306)
364 COG0143 MetG Methionyl-tRNA sy 31.4 51 0.0011 33.5 3.5 31 1-31 22-55 (558)
365 PRK00561 ppnK inorganic polyph 31.4 98 0.0021 28.0 5.0 27 323-349 34-64 (259)
366 PRK13059 putative lipid kinase 31.2 1.6E+02 0.0034 27.1 6.6 28 323-350 57-90 (295)
367 TIGR01861 ANFD nitrogenase iro 30.9 60 0.0013 32.7 3.9 31 91-124 392-422 (513)
368 cd01121 Sms Sms (bacterial rad 30.8 1.7E+02 0.0038 28.1 6.9 29 6-34 98-126 (372)
369 TIGR00228 ruvC crossover junct 30.7 1.7E+02 0.0038 24.1 5.9 51 79-129 39-104 (156)
370 PRK08673 3-deoxy-7-phosphohept 30.4 3.1E+02 0.0068 25.9 8.3 51 341-391 261-325 (335)
371 COG0391 Uncharacterized conser 30.3 4.7E+02 0.01 24.6 9.3 62 208-279 167-230 (323)
372 PF06506 PrpR_N: Propionate ca 30.2 89 0.0019 26.2 4.4 116 2-129 17-154 (176)
373 cd00316 Oxidoreductase_nitroge 30.1 86 0.0019 30.3 4.9 38 86-126 337-374 (399)
374 TIGR00110 ilvD dihydroxy-acid 30.0 1.9E+02 0.0041 29.2 7.0 45 85-129 77-125 (535)
375 TIGR02931 anfK_nitrog Fe-only 29.9 94 0.002 30.9 5.1 36 87-125 376-413 (461)
376 PRK03379 vitamin B12-transport 29.8 1E+02 0.0022 27.7 5.1 37 91-127 66-104 (260)
377 PRK13055 putative lipid kinase 29.8 2.6E+02 0.0056 26.3 7.9 28 323-350 60-93 (334)
378 cd07766 DHQ_Fe-ADH Dehydroquin 29.8 1.7E+02 0.0037 27.4 6.7 29 322-351 78-113 (332)
379 cd01968 Nitrogenase_NifE_I Nit 29.8 73 0.0016 31.1 4.3 35 87-124 346-380 (410)
380 PF00391 PEP-utilizers: PEP-ut 29.7 72 0.0016 22.7 3.2 31 96-126 29-61 (80)
381 PRK08506 replicative DNA helic 29.5 4.4E+02 0.0096 26.3 9.7 32 4-35 206-237 (472)
382 TIGR00147 lipid kinase, YegS/R 29.5 2.6E+02 0.0056 25.6 7.7 28 323-350 58-91 (293)
383 PF02606 LpxK: Tetraacyldisacc 29.5 77 0.0017 29.8 4.2 25 7-31 54-78 (326)
384 PRK14477 bifunctional nitrogen 29.5 70 0.0015 34.9 4.4 38 86-126 378-415 (917)
385 PRK09620 hypothetical protein; 29.4 59 0.0013 28.8 3.2 20 8-27 33-52 (229)
386 cd08181 PPD-like 1,3-propanedi 29.4 1.3E+02 0.0029 28.6 6.0 11 342-352 124-134 (357)
387 PF06792 UPF0261: Uncharacteri 29.4 3.5E+02 0.0076 26.3 8.5 98 239-353 183-281 (403)
388 TIGR02195 heptsyl_trn_II lipop 29.2 2.5E+02 0.0055 26.2 7.8 33 91-127 247-279 (334)
389 PHA02698 hypothetical protein; 29.2 2E+02 0.0044 20.1 5.6 32 376-410 38-69 (89)
390 PRK02304 adenine phosphoribosy 29.0 1.4E+02 0.003 25.0 5.4 39 86-124 40-80 (175)
391 PRK06276 acetolactate synthase 29.0 4.7E+02 0.01 26.9 10.2 114 260-393 5-143 (586)
392 TIGR02990 ectoine_eutA ectoine 28.9 2.5E+02 0.0055 25.0 7.2 39 4-50 105-151 (239)
393 cd08175 G1PDH Glycerol-1-phosp 28.9 4.3E+02 0.0094 25.0 9.3 37 91-128 75-114 (348)
394 cd01973 Nitrogenase_VFe_beta_l 28.8 96 0.0021 30.7 4.9 37 86-125 368-406 (454)
395 PTZ00187 succinyl-CoA syntheta 28.8 4.9E+02 0.011 24.4 15.3 41 88-128 79-122 (317)
396 cd08551 Fe-ADH iron-containing 28.7 5E+02 0.011 24.8 9.8 25 7-31 11-36 (370)
397 cd08783 Death_MALT1 Death doma 28.5 1.9E+02 0.0042 21.5 5.1 36 352-394 20-55 (97)
398 COG4081 Uncharacterized protei 28.4 49 0.0011 26.0 2.1 25 5-29 19-43 (148)
399 PRK04940 hypothetical protein; 28.3 1.5E+02 0.0032 25.1 5.3 33 97-129 60-93 (180)
400 PF10087 DUF2325: Uncharacteri 28.2 2.5E+02 0.0054 20.7 6.5 19 258-276 11-29 (97)
401 PF14626 RNase_Zc3h12a_2: Zc3h 28.1 66 0.0014 25.0 2.8 32 4-35 9-40 (122)
402 PLN02891 IMP cyclohydrolase 28.0 1.5E+02 0.0033 29.7 6.0 44 7-62 35-78 (547)
403 PRK07525 sulfoacetaldehyde ace 28.0 5.7E+02 0.012 26.3 10.7 27 323-349 69-101 (588)
404 PRK00455 pyrE orotate phosphor 28.0 1.8E+02 0.0038 25.1 6.0 40 86-125 51-94 (202)
405 COG1484 DnaC DNA replication p 27.8 46 0.001 30.0 2.4 30 6-35 121-150 (254)
406 TIGR01279 DPOR_bchN light-inde 27.8 1.9E+02 0.0042 28.1 6.8 19 87-105 333-351 (407)
407 cd07062 Peptidase_S66_mccF_lik 27.7 1.2E+02 0.0026 28.3 5.1 72 255-350 51-124 (308)
408 PRK12448 dihydroxy-acid dehydr 27.7 1.7E+02 0.0037 30.0 6.3 44 86-129 100-147 (615)
409 PRK10867 signal recognition pa 27.6 2.7E+02 0.0059 27.4 7.7 78 334-431 259-342 (433)
410 PRK11823 DNA repair protein Ra 27.5 95 0.0021 30.7 4.7 29 6-34 96-124 (446)
411 TIGR03646 YtoQ_fam YtoQ family 27.4 3.2E+02 0.0069 21.8 7.1 34 313-348 68-109 (144)
412 PRK09165 replicative DNA helic 27.4 4.1E+02 0.0089 26.7 9.2 41 89-129 333-394 (497)
413 PF13460 NAD_binding_10: NADH( 27.4 1.3E+02 0.0027 25.1 4.9 35 8-50 12-46 (183)
414 cd00763 Bacterial_PFK Phosphof 27.4 70 0.0015 29.9 3.5 37 317-353 87-126 (317)
415 TIGR02201 heptsyl_trn_III lipo 27.3 4.6E+02 0.0099 24.6 9.2 34 89-126 254-287 (344)
416 PF01297 TroA: Periplasmic sol 27.2 1.9E+02 0.0042 25.8 6.4 81 18-127 149-231 (256)
417 PRK03094 hypothetical protein; 27.1 59 0.0013 23.3 2.3 19 8-26 11-29 (80)
418 COG1090 Predicted nucleoside-d 27.1 3.2E+02 0.0069 25.1 7.3 22 9-30 13-34 (297)
419 COG2099 CobK Precorrin-6x redu 27.0 1E+02 0.0022 27.6 4.2 43 87-129 56-104 (257)
420 COG0162 TyrS Tyrosyl-tRNA synt 26.8 67 0.0015 31.1 3.3 25 2-27 49-73 (401)
421 TIGR01012 Sa_S2_E_A ribosomal 26.6 96 0.0021 26.7 3.9 34 96-129 107-142 (196)
422 cd07038 TPP_PYR_PDC_IPDC_like 26.6 2.8E+02 0.006 22.9 6.7 27 323-349 60-92 (162)
423 TIGR02932 vnfK_nitrog V-contai 26.6 1E+02 0.0022 30.6 4.7 35 88-125 374-409 (457)
424 TIGR01369 CPSaseII_lrg carbamo 26.4 2.6E+02 0.0056 31.3 8.1 38 87-124 994-1039(1050)
425 cd01972 Nitrogenase_VnfE_like 26.4 91 0.002 30.6 4.3 38 87-125 363-400 (426)
426 COG0106 HisA Phosphoribosylfor 26.4 3.7E+02 0.0081 24.0 7.5 45 228-279 87-131 (241)
427 PF05014 Nuc_deoxyrib_tr: Nucl 26.3 2.7E+02 0.0059 21.1 6.2 37 316-352 57-99 (113)
428 TIGR00682 lpxK tetraacyldisacc 26.3 48 0.001 30.9 2.2 24 7-30 47-70 (311)
429 cd01967 Nitrogenase_MoFe_alpha 26.3 87 0.0019 30.4 4.1 35 88-125 346-380 (406)
430 cd01139 TroA_f Periplasmic bin 26.1 1.1E+02 0.0024 28.8 4.7 36 91-126 85-126 (342)
431 PRK12921 2-dehydropantoate 2-r 26.0 85 0.0018 28.9 3.9 28 8-35 13-40 (305)
432 TIGR02113 coaC_strep phosphopa 26.0 81 0.0018 26.6 3.4 31 5-35 14-44 (177)
433 PF05225 HTH_psq: helix-turn-h 26.0 1.1E+02 0.0024 19.1 3.1 26 380-407 1-26 (45)
434 cd02067 B12-binding B12 bindin 25.8 93 0.002 23.9 3.5 31 2-32 11-41 (119)
435 PF03808 Glyco_tran_WecB: Glyc 25.8 3.9E+02 0.0085 22.2 9.9 97 8-132 38-139 (172)
436 COG1663 LpxK Tetraacyldisaccha 25.6 65 0.0014 30.2 2.9 25 6-30 65-89 (336)
437 PRK13278 purP 5-formaminoimida 25.6 4.7E+02 0.01 25.0 8.7 45 230-280 6-50 (358)
438 smart00046 DAGKc Diacylglycero 25.6 68 0.0015 25.1 2.7 29 324-352 51-88 (124)
439 PRK13054 lipid kinase; Reviewe 25.4 3.5E+02 0.0077 24.9 7.9 28 323-350 57-92 (300)
440 PF07530 PRE_C2HC: Associated 25.4 1.5E+02 0.0033 20.5 4.0 35 9-50 3-37 (68)
441 PF00148 Oxidored_nitro: Nitro 25.3 1.1E+02 0.0023 29.7 4.6 36 87-125 331-366 (398)
442 cd08551 Fe-ADH iron-containing 25.3 1.8E+02 0.004 27.7 6.1 11 342-352 122-132 (370)
443 PRK07313 phosphopantothenoylcy 25.2 93 0.002 26.4 3.6 31 5-35 15-45 (182)
444 TIGR02700 flavo_MJ0208 archaeo 25.1 80 0.0017 28.0 3.3 31 5-35 14-46 (234)
445 cd08171 GlyDH-like2 Glycerol d 25.1 2.2E+02 0.0048 26.9 6.6 30 321-351 77-111 (345)
446 PF01210 NAD_Gly3P_dh_N: NAD-d 25.0 66 0.0014 26.4 2.6 21 8-28 12-32 (157)
447 TIGR00732 dprA DNA protecting 25.0 4.7E+02 0.01 22.9 9.8 38 332-369 171-210 (220)
448 PRK04020 rps2P 30S ribosomal p 24.9 1E+02 0.0022 26.7 3.8 33 97-129 114-148 (204)
449 PF03698 UPF0180: Uncharacteri 24.7 69 0.0015 23.0 2.3 21 8-28 11-31 (80)
450 TIGR00416 sms DNA repair prote 24.7 2.4E+02 0.0053 27.9 6.9 29 6-34 110-138 (454)
451 cd02013 TPP_Xsc_like Thiamine 24.7 4.4E+02 0.0095 22.4 9.3 58 326-393 104-164 (196)
452 TIGR02483 PFK_mixed phosphofru 24.6 85 0.0018 29.5 3.5 37 317-353 89-128 (324)
453 PRK09423 gldA glycerol dehydro 24.6 1.6E+02 0.0034 28.2 5.5 29 322-351 84-117 (366)
454 PRK08322 acetolactate synthase 24.5 5.2E+02 0.011 26.3 9.5 27 323-349 64-96 (547)
455 COG2894 MinD Septum formation 24.4 4.1E+02 0.0089 23.6 7.2 34 2-35 15-51 (272)
456 PRK12560 adenine phosphoribosy 24.4 1.8E+02 0.0039 24.7 5.3 38 87-125 42-81 (187)
457 PRK10490 sensor protein KdpD; 24.4 1.1E+02 0.0025 33.3 4.9 34 2-35 36-70 (895)
458 PLN02948 phosphoribosylaminoim 24.4 7.9E+02 0.017 25.3 13.3 84 323-414 466-559 (577)
459 COG2085 Predicted dinucleotide 24.2 83 0.0018 27.3 3.1 23 8-30 14-36 (211)
460 cd01149 HutB Hemin binding pro 24.2 1.2E+02 0.0027 26.5 4.5 36 90-125 51-88 (235)
461 cd03146 GAT1_Peptidase_E Type 24.0 3.9E+02 0.0084 23.2 7.4 47 228-276 17-66 (212)
462 PRK05294 carB carbamoyl phosph 23.9 2.7E+02 0.0058 31.2 7.7 82 6-125 951-1039(1066)
463 PRK06249 2-dehydropantoate 2-r 23.8 1.1E+02 0.0025 28.4 4.3 33 9-49 19-51 (313)
464 PRK13337 putative lipid kinase 23.8 3.1E+02 0.0068 25.3 7.2 28 323-350 58-91 (304)
465 cd01148 TroA_a Metal binding p 23.7 88 0.0019 28.4 3.5 35 91-125 73-113 (284)
466 PRK08760 replicative DNA helic 23.5 3.6E+02 0.0077 27.0 7.8 32 4-35 243-275 (476)
467 PRK08979 acetolactate synthase 23.2 5E+02 0.011 26.6 9.2 59 326-393 472-533 (572)
468 TIGR00118 acolac_lg acetolacta 23.2 5.9E+02 0.013 25.9 9.7 112 260-393 5-144 (558)
469 PF09949 DUF2183: Uncharacteri 23.2 3.3E+02 0.0072 20.5 6.8 90 120-211 1-93 (100)
470 PRK07773 replicative DNA helic 23.1 5.8E+02 0.013 27.9 9.9 43 88-130 318-379 (886)
471 COG1737 RpiR Transcriptional r 23.0 3E+02 0.0065 25.1 6.8 86 234-354 126-216 (281)
472 PHA02754 hypothetical protein; 22.9 1.7E+02 0.0037 19.3 3.5 25 388-415 7-31 (67)
473 PF00862 Sucrose_synth: Sucros 22.8 1E+02 0.0022 30.8 3.6 55 73-128 378-434 (550)
474 PF13941 MutL: MutL protein 22.8 3.5E+02 0.0076 26.8 7.4 46 325-370 251-297 (457)
475 COG3563 KpsC Capsule polysacch 22.7 6.8E+02 0.015 25.0 8.9 85 256-349 166-251 (671)
476 cd03784 GT1_Gtf_like This fami 22.7 4.2E+02 0.0091 25.4 8.2 35 243-279 3-37 (401)
477 cd00529 RuvC_resolvase Hollida 22.6 3.1E+02 0.0068 22.4 6.2 46 82-127 44-104 (154)
478 COG2099 CobK Precorrin-6x redu 22.6 1.7E+02 0.0037 26.2 4.7 40 88-127 187-231 (257)
479 TIGR01675 plant-AP plant acid 22.5 1E+02 0.0022 27.3 3.4 25 5-29 123-147 (229)
480 PF12146 Hydrolase_4: Putative 22.5 1.2E+02 0.0026 21.5 3.2 23 2-24 27-49 (79)
481 PRK06546 pyruvate dehydrogenas 22.4 5.7E+02 0.012 26.3 9.3 58 326-393 459-518 (578)
482 PF02056 Glyco_hydro_4: Family 22.4 4.9E+02 0.011 22.1 8.8 113 5-130 42-172 (183)
483 TIGR03837 efp_adjacent_2 conse 22.2 1.2E+02 0.0026 28.9 3.9 40 305-347 243-285 (371)
484 PRK06555 pyrophosphate--fructo 22.1 82 0.0018 30.5 2.9 38 316-353 106-152 (403)
485 cd07037 TPP_PYR_MenD Pyrimidin 22.1 79 0.0017 26.2 2.6 27 323-349 61-93 (162)
486 PRK10964 ADP-heptose:LPS hepto 22.1 3.2E+02 0.0069 25.4 7.0 32 91-126 249-280 (322)
487 KOG4175 Tryptophan synthase al 22.0 89 0.0019 26.8 2.7 43 234-276 9-51 (268)
488 TIGR02699 archaeo_AfpA archaeo 22.0 1E+02 0.0022 26.0 3.1 33 3-35 11-45 (174)
489 cd00672 CysRS_core catalytic c 21.9 1E+02 0.0022 26.9 3.3 29 1-29 36-67 (213)
490 PF13167 GTP-bdg_N: GTP-bindin 21.9 2.5E+02 0.0053 21.0 4.8 36 87-122 47-84 (95)
491 cd08181 PPD-like 1,3-propanedi 21.8 6.9E+02 0.015 23.7 11.1 23 7-29 14-36 (357)
492 COG1433 Uncharacterized conser 21.8 2.3E+02 0.0049 22.3 4.8 38 89-126 57-94 (121)
493 PRK00771 signal recognition pa 21.7 4.1E+02 0.009 26.2 7.7 18 332-349 249-266 (437)
494 PRK03202 6-phosphofructokinase 21.7 94 0.002 29.1 3.2 37 317-353 88-127 (320)
495 TIGR03659 IsdE heme ABC transp 21.6 2E+02 0.0043 26.3 5.4 36 91-126 85-121 (289)
496 TIGR00665 DnaB replicative DNA 21.6 7.7E+02 0.017 24.1 10.1 31 5-35 210-241 (434)
497 PTZ00254 40S ribosomal protein 21.5 1.3E+02 0.0029 26.9 3.9 34 96-129 117-152 (249)
498 PRK02645 ppnK inorganic polyph 21.5 88 0.0019 29.1 3.0 28 323-350 58-89 (305)
499 cd08194 Fe-ADH6 Iron-containin 21.5 2.1E+02 0.0045 27.5 5.7 11 341-351 121-131 (375)
500 PRK14071 6-phosphofructokinase 21.4 1E+02 0.0022 29.5 3.4 38 316-353 101-142 (360)
No 1
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.1e-58 Score=443.26 Aligned_cols=424 Identities=33% Similarity=0.544 Sum_probs=318.0
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|||++|++.||+.|+.+|+.|||++++.+...+.+.. .....+++|+.+|+| ..+|+|++ .+...+........+..
T Consensus 17 qGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~-~~~~~~i~~~~lp~p-~~dglp~~-~~~~~~~~~~~~~~~~~ 93 (472)
T PLN02670 17 MGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIP-SQLSSSITLVSFPLP-SVPGLPSS-AESSTDVPYTKQQLLKK 93 (472)
T ss_pred hhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcc-ccCCCCeeEEECCCC-ccCCCCCC-cccccccchhhHHHHHH
Confidence 7999999999999999999999999998876665311 112246999999988 55788876 44433332122234555
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccC----CCCCCCCC-------cC
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNS----SLKFPFPE-------FD 149 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~----~~~~p~~~-------~~ 149 (434)
....+.+.+.+++++.+|++||+|.++.|+..+|+++|||.+.+++.+......+.++. ....+... ..
T Consensus 94 ~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 173 (472)
T PLN02670 94 AFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGGDLRSTAEDFTVVPPW 173 (472)
T ss_pred HHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcccCCCccccccCCCCc
Confidence 66667788888888888999999999999999999999999999998887776543221 00000000 01
Q ss_pred CCC-----cccccccccccccc---CCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCC--
Q 046033 150 LPE-----SEIQKMTQFKHRIV---NGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQE-- 219 (434)
Q Consensus 150 ~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~-- 219 (434)
+|. +....+..++.... .......+....+.. ++.+++|||.++|+.+++.++..++++++.|||+...
T Consensus 174 ~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~-~~gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~ 252 (472)
T PLN02670 174 VPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGG-SDVVIIRSSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIE 252 (472)
T ss_pred CCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhccc-CCEEEEeCHHHHhHHHHHHHHHhhCCCeEEEecCCcccc
Confidence 111 11111222221111 111222223333444 8899999999999999999987666789999999642
Q ss_pred CC-CCCC---CCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhH
Q 046033 220 PI-YTDN---NNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGF 295 (434)
Q Consensus 220 ~~-~~~~---~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~ 295 (434)
.. .... ....++.+|||++++++||||||||+...+.+.+.+++.+|+.++..|||++........+....+|++|
T Consensus 253 ~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f 332 (472)
T PLN02670 253 DDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGF 332 (472)
T ss_pred ccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHH
Confidence 11 0110 1125799999999888899999999999999999999999999999999999853221111124689999
Q ss_pred HHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeeccccc
Q 046033 296 AEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEI 375 (434)
Q Consensus 296 ~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~ 375 (434)
.++. ...++.+.+|+||.+||+|+++++|||||||||+.||+++|||+|++|.++||+.||+++++.|+|+.+...+.
T Consensus 333 ~~~~--~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~ 410 (472)
T PLN02670 333 EERV--KGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDER 410 (472)
T ss_pred HHhc--cCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeecccc
Confidence 9988 77789888999999999999999999999999999999999999999999999999999999999999964321
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHhhh
Q 046033 376 NQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG--DDEEINVVEKLLQLV 430 (434)
Q Consensus 376 ~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~--~~~~~~~ve~l~~~~ 430 (434)
...++.++|+++|+++|.++++.+||+||+++++.+++.+ .+.+..+++.|.++.
T Consensus 411 ~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 411 DGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred CCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHhc
Confidence 2358999999999999986556799999999999999977 555556666665544
No 2
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.1e-57 Score=433.92 Aligned_cols=420 Identities=29% Similarity=0.509 Sum_probs=319.7
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|||++|++.||+.|+.+|+.|||++++.+...+... ...+.++.+..+++| ..+|+|++ .+.+.++.......+..
T Consensus 16 qGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~--~~~~~~~~v~~~~~p-~~~glp~g-~e~~~~~~~~~~~~~~~ 91 (453)
T PLN02764 16 TGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL--NLFPHNIVFRSVTVP-HVDGLPVG-TETVSEIPVTSADLLMS 91 (453)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc--ccCCCCceEEEEECC-CcCCCCCc-ccccccCChhHHHHHHH
Confidence 799999999999999999999999999876655441 111123334444444 33788877 55444444333445666
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCC-CCCCCCcCCCC----ccc
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSL-KFPFPEFDLPE----SEI 155 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~----~~~ 155 (434)
....+.+.+.++++..+||+||+|+ ..|+..+|+++|||.+.+++.+.+....+..+... ..|.+ .++. +..
T Consensus 92 a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~~p--glp~~~v~l~~ 168 (453)
T PLN02764 92 AMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLVPGGELGVPPP--GYPSSKVLLRK 168 (453)
T ss_pred HHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhcccccCCCCCC--CCCCCcccCcH
Confidence 6666778888899888899999995 89999999999999999999999888765432111 01111 1110 111
Q ss_pred cccccccc--cc---cCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchh
Q 046033 156 QKMTQFKH--RI---VNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTK 230 (434)
Q Consensus 156 ~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~ 230 (434)
..+..+.. +. ........++...+.. ++.+++|||.++|+.++++++...+++++.|||+...+. .....+++
T Consensus 169 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~-~~~~~~~~ 246 (453)
T PLN02764 169 QDAYTMKNLEPTNTIDVGPNLLERVTTSLMN-SDVIAIRTAREIEGNFCDYIEKHCRKKVLLTGPVFPEPD-KTRELEER 246 (453)
T ss_pred hhCcchhhcCCCccchhHHHHHHHHHHhhcc-CCEEEEeccHHhhHHHHHHHHhhcCCcEEEeccCccCcc-ccccchhH
Confidence 11111100 00 1111233334344454 889999999999999999987755568999999964321 11123568
Q ss_pred hhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEec
Q 046033 231 IMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQG 310 (434)
Q Consensus 231 ~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~ 310 (434)
+.+|||.+++++||||||||....+.+.+.++..+|+.++..|+|+++.+.+.. +..+.+|++|.+++ ...++.+.+
T Consensus 247 cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~-~~~~~lp~~f~~r~--~grG~v~~~ 323 (453)
T PLN02764 247 WVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSS-TIQEALPEGFEERV--KGRGVVWGG 323 (453)
T ss_pred HHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCc-chhhhCCcchHhhh--ccCCcEEeC
Confidence 999999999999999999999888999999999999999999999998643322 12356999999998 788999999
Q ss_pred ccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHh-hceeeeecccccCCcccHHHHHHHHH
Q 046033 311 WAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVAD-IGVGLEVPRDEINQRVRKEELARVFK 389 (434)
Q Consensus 311 ~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~-~G~g~~~~~~~~~~~~~~~~l~~~v~ 389 (434)
|+||.+||+|+++++|||||||||+.||+++|||+|++|.+.||+.||+++++ .|+|+.+..++ ...+++++|+++|+
T Consensus 324 W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~-~~~~~~e~i~~av~ 402 (453)
T PLN02764 324 WVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREE-TGWFSKESLRDAIN 402 (453)
T ss_pred CCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEecccc-CCccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999964 79999875321 13589999999999
Q ss_pred HHhcc--cchHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHhhhcCC
Q 046033 390 QVVEQ--EEGQQIKRKAKELSESIKKKG--DDEEINVVEKLLQLVKVP 433 (434)
Q Consensus 390 ~ll~~--~~~~~~~~~a~~l~~~~~~~~--~~~~~~~ve~l~~~~~~~ 433 (434)
++|.+ ++..++|++++++++.+++.| ..++.++|+++.++.+.-
T Consensus 403 ~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~~~~~~~ 450 (453)
T PLN02764 403 SVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQDLVSGT 450 (453)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccc
Confidence 99986 336789999999999999977 889999999998876654
No 3
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=1.2e-56 Score=431.63 Aligned_cols=415 Identities=27% Similarity=0.510 Sum_probs=317.9
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|||++|++.||+.|+.+|++|||++++.+...+.... ....+++|+.+++| ..+|+|++ .+...++.......+..
T Consensus 15 qGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~--~~~~~i~~~~i~lP-~~dGLP~g-~e~~~~l~~~~~~~~~~ 90 (446)
T PLN00414 15 FGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLN--LFPDSIVFEPLTLP-PVDGLPFG-AETASDLPNSTKKPIFD 90 (446)
T ss_pred cchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccc--cCCCceEEEEecCC-CcCCCCCc-ccccccchhhHHHHHHH
Confidence 7999999999999999999999999998876665422 12236899877767 45788877 44443332223344556
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCC------CCCCCCCcCCCCcc
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSS------LKFPFPEFDLPESE 154 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~------~~~p~~~~~~~~~~ 154 (434)
....+.+.+.++++..+||+||+|+ +.|+..+|+++|||.+.+++.+.+....+.++.. +++|.....++...
T Consensus 91 a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~ 169 (446)
T PLN00414 91 AMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAELGFPPPDYPLSKVALRGHD 169 (446)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhhcCCCCCCCCCCcCcCchhh
Confidence 6667778888888888899999995 7999999999999999999999988876554321 11221100011000
Q ss_pred ccccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCC-CCCCchhhhh
Q 046033 155 IQKMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYT-DNNNDTKIMD 233 (434)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~-~~~~~~~~~~ 233 (434)
..+..++. . ......+....+.. ++.+++|||.++|+.+++.++..++++++.|||+....... .....+++.+
T Consensus 170 -~~~~~~~~--~-~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~ 244 (446)
T PLN00414 170 -ANVCSLFA--N-SHELFGLITKGLKN-CDVVSIRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNH 244 (446)
T ss_pred -cccchhhc--c-cHHHHHHHHHhhcc-CCEEEEechHHHHHHHHHHHHHhcCCCeEEEcccCCCcccccCcccHHHHHH
Confidence 00111111 0 11223334445555 88999999999999999998876666899999996432111 1112356889
Q ss_pred hhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccC
Q 046033 234 WLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAP 313 (434)
Q Consensus 234 ~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p 313 (434)
|||.+++++||||||||....+.+.+.++..+|+.++..|+|++....+.. +..+.+|++|.+++ ...++++.+|+|
T Consensus 245 WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~-~~~~~lp~~f~~r~--~~~g~vv~~w~P 321 (446)
T PLN00414 245 WLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSS-TVQEALPEGFEERV--KGRGIVWEGWVE 321 (446)
T ss_pred HHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcc-cchhhCChhHHHHh--cCCCeEEeccCC
Confidence 999999999999999999999999999999999999999999998643221 22356999999998 778998889999
Q ss_pred HHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHH-hhceeeeecccccCCcccHHHHHHHHHHHh
Q 046033 314 QAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVA-DIGVGLEVPRDEINQRVRKEELARVFKQVV 392 (434)
Q Consensus 314 ~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~-~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll 392 (434)
|..||+|+++++|||||||||+.||+++|||+|++|.+.||+.||++++ ..|+|+.+..++ .+.+++++|+++|+++|
T Consensus 322 Q~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~-~~~~~~~~i~~~v~~~m 400 (446)
T PLN00414 322 QPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQRED-SGWFSKESLRDTVKSVM 400 (446)
T ss_pred HHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEecccc-CCccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999996 579999996421 23589999999999999
Q ss_pred cc--cchHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHhh
Q 046033 393 EQ--EEGQQIKRKAKELSESIKKKG--DDEEINVVEKLLQL 429 (434)
Q Consensus 393 ~~--~~~~~~~~~a~~l~~~~~~~~--~~~~~~~ve~l~~~ 429 (434)
.+ ++..++|++|+++++.+.+.| ...+.++|+++.+.
T Consensus 401 ~~~~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~~~~ 441 (446)
T PLN00414 401 DKDSEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEALENE 441 (446)
T ss_pred cCChhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHh
Confidence 75 335679999999999998744 66788999888554
No 4
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-56 Score=431.50 Aligned_cols=414 Identities=27% Similarity=0.488 Sum_probs=314.8
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|||++|++.||+.|+.+||+|||++++.+...+.+.+ +.+.+++|..+++| ..++++.+ .+....+..++...+..
T Consensus 15 qGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~--a~~~~i~~~~l~~p-~~dgLp~g-~~~~~~l~~~l~~~~~~ 90 (442)
T PLN02208 15 FGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHN--LFPDSIVFHPLTIP-PVNGLPAG-AETTSDIPISMDNLLSE 90 (442)
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhccc--CCCCceEEEEeCCC-CccCCCCC-cccccchhHHHHHHHHH
Confidence 7999999999999999999999999998877765522 12236778877665 33677776 44333332333445555
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCC-CCCCCCcCCCC----ccc
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSL-KFPFPEFDLPE----SEI 155 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~----~~~ 155 (434)
....+.+.+++++++.+||+||+| ++.|+..+|+++|||++.+++.+.+.....+.+... ..|.+ .++. +..
T Consensus 91 ~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~~~~~~~~~~~~~~p--glp~~~~~~~~ 167 (442)
T PLN02208 91 ALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIAHTHVPGGKLGVPPP--GYPSSKVLFRE 167 (442)
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHHHHccCccccCCCCC--CCCCcccccCH
Confidence 666778888999988899999999 579999999999999999999988866532221110 11111 1111 111
Q ss_pred cccccccccccCCc-hhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhh
Q 046033 156 QKMTQFKHRIVNGT-ENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDW 234 (434)
Q Consensus 156 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~ 234 (434)
..+..+ ....... ....++...... ++.+++|||.++|+.+++++...++++++.|||+..... .....+.++.+|
T Consensus 168 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~-~~~~~~~~~~~w 244 (442)
T PLN02208 168 NDAHAL-ATLSIFYKRLYHQITTGLKS-CDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPD-TSKPLEEQWSHF 244 (442)
T ss_pred HHcCcc-cccchHHHHHHHHHHhhhcc-CCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcC-CCCCCHHHHHHH
Confidence 111111 1001101 112222233444 889999999999999999988777789999999965421 112357889999
Q ss_pred hcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCH
Q 046033 235 LSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQ 314 (434)
Q Consensus 235 l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~ 314 (434)
||.+++++||||||||....+.+.+.+++.+++.++..++|+++.+.+.. +..+.+|++|.+++ ...|+.+.+|+||
T Consensus 245 Ld~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~-~~~~~lp~~f~~r~--~~~g~~v~~W~PQ 321 (442)
T PLN02208 245 LSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSS-TVQEGLPEGFEERV--KGRGVVWGGWVQQ 321 (442)
T ss_pred HhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccc-chhhhCCHHHHHHH--hcCCcEeeccCCH
Confidence 99998889999999999988889899999998888999999998642211 11246899999998 7889999899999
Q ss_pred HHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHh-hceeeeecccccCCcccHHHHHHHHHHHhc
Q 046033 315 AKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVAD-IGVGLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 315 ~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~-~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
.+||+|+++++|||||||||+.||+++|||+|++|.++||+.||+++.+ .|+|+.+.+++ .+.+++++|+++|+++|+
T Consensus 322 ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~-~~~~~~~~l~~ai~~~m~ 400 (442)
T PLN02208 322 PLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREK-TGWFSKESLSNAIKSVMD 400 (442)
T ss_pred HHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEecccc-CCcCcHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998766 89999997422 234899999999999997
Q ss_pred cc--chHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHh
Q 046033 394 QE--EGQQIKRKAKELSESIKKKG--DDEEINVVEKLLQ 428 (434)
Q Consensus 394 ~~--~~~~~~~~a~~l~~~~~~~~--~~~~~~~ve~l~~ 428 (434)
++ +..++|++|+++++.+.+.| ..++.++|+++.+
T Consensus 401 ~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l~~ 439 (442)
T PLN02208 401 KDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEELQE 439 (442)
T ss_pred CCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 53 36789999999999998866 8889999998854
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.9e-55 Score=424.76 Aligned_cols=419 Identities=29% Similarity=0.482 Sum_probs=315.8
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|||++|++.||+.|+.+|+.|||++++.+...+..... . ..+++++.+++| ..+++|.+ ......+..+....+..
T Consensus 20 qGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~-~-~~~i~~~~lp~P-~~~~lPdG-~~~~~~~~~~~~~~~~~ 95 (477)
T PLN02863 20 QGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS-K-HPSIETLVLPFP-SHPSIPSG-VENVKDLPPSGFPLMIH 95 (477)
T ss_pred cchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc-c-CCCeeEEeCCCC-CcCCCCCC-CcChhhcchhhHHHHHH
Confidence 79999999999999999999999999988877654211 1 146899888888 55788887 55554444344445666
Q ss_pred HHHHhHHHHHHHHhh--cCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCC--CC--------CCCCc
Q 046033 81 AFDAAKPAFCNVLET--LKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSL--KF--------PFPEF 148 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~--~~--------p~~~~ 148 (434)
....+.+.+.+++++ .+|++||+|.+.+|+..+|+++|||.+.+++.+.+.+..+.+.... .. +....
T Consensus 96 a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (477)
T PLN02863 96 ALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPTKINPDDQNEILSFS 175 (477)
T ss_pred HHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccccccccccccccccC
Confidence 666667778888876 3579999999999999999999999999999999888755442210 00 00000
Q ss_pred CCCC---ccccccccccccccCCchh---HHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcC-CceeeeCCCCCCCC
Q 046033 149 DLPE---SEIQKMTQFKHRIVNGTEN---RDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITK-KETIPVGPLVQEPI 221 (434)
Q Consensus 149 ~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vGpl~~~~~ 221 (434)
.+|. +....+..++......... ..+....... ++.+++|||.++|+.+++.++..++ ++++.|||+.....
T Consensus 176 ~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~~~~~~~~~~v~~IGPL~~~~~ 254 (477)
T PLN02863 176 KIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIA-SWGLVVNSFTELEGIYLEHLKKELGHDRVWAVGPILPLSG 254 (477)
T ss_pred CCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhcc-CCEEEEecHHHHHHHHHHHHHhhcCCCCeEEeCCCccccc
Confidence 1222 1111122222111111111 1122222233 7889999999999999999987665 68999999964221
Q ss_pred CC-------C--CCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCc
Q 046033 222 YT-------D--NNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALP 292 (434)
Q Consensus 222 ~~-------~--~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p 292 (434)
.. . ...++++.+||+.+++++||||||||+...+.+.+.+++.+|++.+..|||+++...... .....+|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~-~~~~~lp 333 (477)
T PLN02863 255 EKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEE-SDYSNIP 333 (477)
T ss_pred ccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccc-cchhhCC
Confidence 00 0 112467999999998889999999999888899999999999999999999997532211 1123588
Q ss_pred hhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHH-hhceeeeec
Q 046033 293 QGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVA-DIGVGLEVP 371 (434)
Q Consensus 293 ~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~-~~G~g~~~~ 371 (434)
+++.++. ...|+++.+|+||..+|+|+++++|||||||||++||+++|||+|++|+++||+.||+++. ..|+|+++.
T Consensus 334 ~~~~~r~--~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~ 411 (477)
T PLN02863 334 SGFEDRV--AGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVC 411 (477)
T ss_pred HHHHHHh--ccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEec
Confidence 9998887 6789999899999999999999999999999999999999999999999999999999965 579999995
Q ss_pred ccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHHHhhh
Q 046033 372 RDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK----KG--DDEEINVVEKLLQLV 430 (434)
Q Consensus 372 ~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l~~~~ 430 (434)
.+. ....+.+++.++|+++|.+ +++||+||+++++.+++ +| .+++.++++++.++.
T Consensus 412 ~~~-~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 412 EGA-DTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred cCC-CCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhc
Confidence 321 2346899999999999942 68999999999999665 45 888999999987654
No 6
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.4e-54 Score=418.25 Aligned_cols=424 Identities=25% Similarity=0.471 Sum_probs=309.9
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccC--CCCeEEEEecCCCCCCCCCCCCCCCCCCCcc-ccHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKF--STSIQLIDLQLPCTFPELHDPYNHTTKNIPR-HLIPT 77 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~--~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 77 (434)
|||++|++.||+.|+.+|+.|||++++.+...+........ +.+++|+.+|+|+..+|+|++ .+.+..+.. .+...
T Consensus 19 qGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~-~~~~~~~~~~~~~~~ 97 (491)
T PLN02534 19 QGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIG-CENLDTLPSRDLLRK 97 (491)
T ss_pred cchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCC-ccccccCCcHHHHHH
Confidence 79999999999999999999999999988766554321111 124999999888433588877 554443332 34445
Q ss_pred HHHHHHHhHHHHHHHHhh--cCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhh----c-cCC----CCCCCC
Q 046033 78 LIEAFDAAKPAFCNVLET--LKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFL----Q-NSS----LKFPFP 146 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~----~-~~~----~~~p~~ 146 (434)
+......+.+.+.+++++ .+|++||+|.++.|+..+|+++|||.+.+++.+.+....+. + +.. ...|..
T Consensus 98 ~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (491)
T PLN02534 98 FYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHNAHLSVSSDSEPFV 177 (491)
T ss_pred HHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhcccccCCCCCceee
Confidence 555556667788888875 35799999999999999999999999999999887765422 1 100 001110
Q ss_pred CcCCCC---ccccccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCC-
Q 046033 147 EFDLPE---SEIQKMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIY- 222 (434)
Q Consensus 147 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~- 222 (434)
...++. +....+...+.. ......+..........++.+++|||.+||+.+++.++..++++++.|||+......
T Consensus 178 iPg~p~~~~l~~~dlp~~~~~-~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~ 256 (491)
T PLN02534 178 VPGMPQSIEITRAQLPGAFVS-LPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVWCVGPVSLCNKRN 256 (491)
T ss_pred cCCCCccccccHHHCChhhcC-cccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEEEECccccccccc
Confidence 111111 111112221110 111111111112122226789999999999999999987777789999999632110
Q ss_pred ------CC-CC-CchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchh
Q 046033 223 ------TD-NN-NDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQG 294 (434)
Q Consensus 223 ------~~-~~-~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~ 294 (434)
.. .. ..+++.+|||.+++++||||+|||.....++.+.++..+|+.++.+|||++..+..........+|++
T Consensus 257 ~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~g 336 (491)
T PLN02534 257 LDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKEN 336 (491)
T ss_pred ccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchh
Confidence 00 11 23569999999988899999999999889999999999999999999999984321111111246899
Q ss_pred HHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHh-hceeeeeccc
Q 046033 295 FAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVAD-IGVGLEVPRD 373 (434)
Q Consensus 295 ~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~-~G~g~~~~~~ 373 (434)
|.++. ...|+++.+|+||..||+|+++++|||||||||+.||+++|||+|++|.+.||+.||+++.+ .|+|+.+.-+
T Consensus 337 f~~~~--~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~ 414 (491)
T PLN02534 337 FEERI--KGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVE 414 (491)
T ss_pred hHHhh--ccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEeccc
Confidence 98877 67889888999999999999999999999999999999999999999999999999999874 5998877411
Q ss_pred ------ccC--C-cccHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHHHh
Q 046033 374 ------EIN--Q-RVRKEELARVFKQVVE--QEEGQQIKRKAKELSESIKK----KG--DDEEINVVEKLLQ 428 (434)
Q Consensus 374 ------~~~--~-~~~~~~l~~~v~~ll~--~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l~~ 428 (434)
++. . .+++++|+++|+++|. +|++.++|+||++|++.+++ +| .+++.++|+++.+
T Consensus 415 ~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~ 486 (491)
T PLN02534 415 VPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVLK 486 (491)
T ss_pred ccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 001 1 3799999999999997 55678999999999999986 45 8889999999864
No 7
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=2.5e-54 Score=416.40 Aligned_cols=410 Identities=28% Similarity=0.510 Sum_probs=306.6
Q ss_pred CCChHHHHHHHHHHH-hCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHH
Q 046033 1 HGHITPYLALAKKLS-QQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLI 79 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~-~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (434)
|||++|++.||+.|+ .+|++|||++++.+...+.+.... ..+++++.+|.| ..+++++. .. +....+.
T Consensus 16 qGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~--~~~i~~~~lp~p-~~~glp~~-~~-------~~~~~~~ 84 (481)
T PLN02992 16 MGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLN--STGVDIVGLPSP-DISGLVDP-SA-------HVVTKIG 84 (481)
T ss_pred cchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcccc--CCCceEEECCCc-cccCCCCC-Cc-------cHHHHHH
Confidence 799999999999998 789999999999876655331110 136999999877 44566522 11 1122333
Q ss_pred HHHHHhHHHHHHHHhhc--CCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhcc-C-----CCC--CCCCCcC
Q 046033 80 EAFDAAKPAFCNVLETL--KPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQN-S-----SLK--FPFPEFD 149 (434)
Q Consensus 80 ~~~~~~~~~~~~~l~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~-~-----~~~--~p~~~~~ 149 (434)
.....+.+.+++++++. +|++||+|+++.|+..+|+++|||.+.+++.+.+....+.+. . ... .+.....
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (481)
T PLN02992 85 VIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEHTVQRKPLA 164 (481)
T ss_pred HHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccccccCCCCcc
Confidence 34445567777888764 689999999999999999999999999999988776543221 1 000 0000011
Q ss_pred CCC---cccccccc-ccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhh--c----CCceeeeCCCCCC
Q 046033 150 LPE---SEIQKMTQ-FKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYI--T----KKETIPVGPLVQE 219 (434)
Q Consensus 150 ~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~vGpl~~~ 219 (434)
+|. +....+.. +..+.........+....+.. ++.+++|||.++|+.+++.++.. + .++++.|||+...
T Consensus 165 iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~-a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~VGPl~~~ 243 (481)
T PLN02992 165 MPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPK-ADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPIGPLCRP 243 (481)
T ss_pred cCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhccc-CCEEEEechHHHhHHHHHHHhhccccccccCCceEEecCccCC
Confidence 221 11111221 111111112223333344454 88999999999999999887642 1 3579999999753
Q ss_pred CCCCCCCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCC--------------Cc
Q 046033 220 PIYTDNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEG--------------NF 285 (434)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~--------------~~ 285 (434)
.. ....+.++.+|||.+++++||||||||....+.+.+.++..+|+.++.+|||++..+... ..
T Consensus 244 ~~--~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~ 321 (481)
T PLN02992 244 IQ--SSKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRD 321 (481)
T ss_pred cC--CCcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCccccccc
Confidence 21 112356799999999888899999999999999999999999999999999999743110 01
Q ss_pred cccccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHH-Hhh
Q 046033 286 TIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMV-ADI 364 (434)
Q Consensus 286 ~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~-~~~ 364 (434)
+..+.+|++|.+++ ...|+++.+|+||.+||+|+++++|||||||||+.||+++|||+|++|.++||+.||+++ +++
T Consensus 322 ~~~~~lp~~f~eR~--~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~ 399 (481)
T PLN02992 322 NTPEYLPEGFVSRT--HDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDEL 399 (481)
T ss_pred chhhhCCHHHHHHh--cCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHh
Confidence 12345899999999 888999999999999999999999999999999999999999999999999999999999 589
Q ss_pred ceeeeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh------cc--hHHHHHHHHHHHh
Q 046033 365 GVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK------KG--DDEEINVVEKLLQ 428 (434)
Q Consensus 365 G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~------~~--~~~~~~~ve~l~~ 428 (434)
|+|+.+... ...++.++|+++|+++|.++++.++|++++++++.+++ +| ..++.++++++.+
T Consensus 400 g~gv~~~~~--~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 400 GIAVRSDDP--KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred CeeEEecCC--CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 999999731 13589999999999999876678999999999998874 34 7788899988866
No 8
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.9e-54 Score=413.19 Aligned_cols=403 Identities=28% Similarity=0.437 Sum_probs=292.5
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|||++|++.||+.|+.+|+.|||++++.+...... .. .+++|..+ | +|+|++..... .....+..
T Consensus 18 qGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~----~~-~~i~~~~i--p---~glp~~~~~~~-----~~~~~~~~ 82 (451)
T PLN02410 18 QGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSD----DF-TDFQFVTI--P---ESLPESDFKNL-----GPIEFLHK 82 (451)
T ss_pred cccHHHHHHHHHHHHcCCCEEEEEeCccccccccc----CC-CCeEEEeC--C---CCCCccccccc-----CHHHHHHH
Confidence 79999999999999999999999999876421110 11 36888776 4 56765311211 11122222
Q ss_pred HHHHhHHHHHHHHhhc------CCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhcc---CCCC--CCCC---
Q 046033 81 AFDAAKPAFCNVLETL------KPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQN---SSLK--FPFP--- 146 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~------~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~---~~~~--~p~~--- 146 (434)
....+.+.+.+++++. ++++||+|++..|+..+|+++|||.+.+++.+.+....+.+. ...+ .|..
T Consensus 83 ~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (451)
T PLN02410 83 LNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLKEPK 162 (451)
T ss_pred HHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCccccc
Confidence 3334445555555542 469999999999999999999999999999998877643321 0000 0100
Q ss_pred ---CcCCCC---ccccccccccccc-cCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCC
Q 046033 147 ---EFDLPE---SEIQKMTQFKHRI-VNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQE 219 (434)
Q Consensus 147 ---~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~ 219 (434)
...+|. +....+....... .......... ..... ++.+++|||+++|++++++++...++++++|||+...
T Consensus 163 ~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~-~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~~~ 240 (451)
T PLN02410 163 GQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNT-VDKRT-ASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLHLV 240 (451)
T ss_pred cCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHH-hhccc-CCEEEEeChHHhhHHHHHHHHhccCCCEEEecccccc
Confidence 001121 1111122111100 0000111111 12333 8899999999999999999987677789999999643
Q ss_pred CC--CCCCCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHH
Q 046033 220 PI--YTDNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAE 297 (434)
Q Consensus 220 ~~--~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~ 297 (434)
.. ........++.+|||++++++||||||||....+.+.+.++..+|+.++.+|+|++..+.....+....+|++|.+
T Consensus 241 ~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~e 320 (451)
T PLN02410 241 ASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSK 320 (451)
T ss_pred cCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHH
Confidence 21 0111223467899999988899999999999999999999999999999999999985321111112358999998
Q ss_pred hhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhh-ceeeeecccccC
Q 046033 298 EIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADI-GVGLEVPRDEIN 376 (434)
Q Consensus 298 ~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~-G~g~~~~~~~~~ 376 (434)
+. ... ..+.+|+||.+||+|+++++|||||||||+.||+++|||+|++|.++||+.||+++++. |+|+.+.
T Consensus 321 r~--~~~-g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~----- 392 (451)
T PLN02410 321 II--SGR-GYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE----- 392 (451)
T ss_pred hc--cCC-eEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-----
Confidence 87 444 45669999999999999999999999999999999999999999999999999999877 9999995
Q ss_pred CcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHHHh
Q 046033 377 QRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK----KG--DDEEINVVEKLLQ 428 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l~~ 428 (434)
..+++++|+++|+++|.++++++||++|++|++.+++ +| .+++.++++.+..
T Consensus 393 ~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 393 GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 4589999999999999876677999999999999985 45 8889999988753
No 9
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-53 Score=409.65 Aligned_cols=400 Identities=29% Similarity=0.474 Sum_probs=296.9
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|||++|++.||+.|+.+|+.|||++++.+...+... ...+++|+.+ | +|+|++...... +....+..
T Consensus 16 qGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~----~~~~i~~~~i--p---dglp~~~~~~~~----~~~~~~~~ 82 (449)
T PLN02173 16 QGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD----PSSPISIATI--S---DGYDQGGFSSAG----SVPEYLQN 82 (449)
T ss_pred cccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC----CCCCEEEEEc--C---CCCCCccccccc----CHHHHHHH
Confidence 799999999999999999999999999876655321 1146999887 4 577763122221 12233333
Q ss_pred HHHHhHHHHHHHHhhc----CC-CEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCC--CCCCCCCcCCCCc
Q 046033 81 AFDAAKPAFCNVLETL----KP-TLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSS--LKFPFPEFDLPES 153 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~----~p-DlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~ 153 (434)
....+.+.+.+++++. +| ++||+|.+..|+..+|+++|||.+.+++.+.+....+.++.. ...+.....++.+
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~~~~~~~~~~pg~p~l 162 (449)
T PLN02173 83 FKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYINNGSLTLPIKDLPLL 162 (449)
T ss_pred HHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHhccCCccCCCCCCCCC
Confidence 3335566777777753 56 999999999999999999999999999988777654433211 1111111122322
Q ss_pred cccccccccccccCC---chhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCC--------CC
Q 046033 154 EIQKMTQFKHRIVNG---TENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEP--------IY 222 (434)
Q Consensus 154 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~--------~~ 222 (434)
....+..++...... ...+.+....... ++.+++|||.++|+++++.++.. ++++.|||+.... ..
T Consensus 163 ~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~~~~~--~~v~~VGPl~~~~~~~~~~~~~~ 239 (449)
T PLN02173 163 ELQDLPTFVTPTGSHLAYFEMVLQQFTNFDK-ADFVLVNSFHDLDLHENELLSKV--CPVLTIGPTVPSMYLDQQIKSDN 239 (449)
T ss_pred ChhhCChhhcCCCCchHHHHHHHHHHhhhcc-CCEEEEeCHHHhhHHHHHHHHhc--CCeeEEcccCchhhccccccccc
Confidence 222233322211111 1111222333444 88999999999999999888653 3799999996320 00
Q ss_pred CC----C--CCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHH
Q 046033 223 TD----N--NNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFA 296 (434)
Q Consensus 223 ~~----~--~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~ 296 (434)
.. . ..++++.+||+.++++++|||||||+...+.+.+.+++.+| ++..|+|++.... .+.+|+++.
T Consensus 240 ~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~------~~~lp~~~~ 311 (449)
T PLN02173 240 DYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE------ESKLPPGFL 311 (449)
T ss_pred cccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc------hhcccchHH
Confidence 00 0 12346999999998889999999999988999999999999 7778999997531 234788888
Q ss_pred HhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhh-ceeeeeccccc
Q 046033 297 EEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADI-GVGLEVPRDEI 375 (434)
Q Consensus 297 ~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~-G~g~~~~~~~~ 375 (434)
++. ...|+.+.+|+||..||+|+++++|||||||||+.|++++|||+|++|.++||+.||+++++. |+|+.+..++.
T Consensus 312 ~~~--~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~ 389 (449)
T PLN02173 312 ETV--DKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKE 389 (449)
T ss_pred Hhh--cCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeeccc
Confidence 776 567888889999999999999999999999999999999999999999999999999999986 99988864321
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHH
Q 046033 376 NQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK----KG--DDEEINVVEKL 426 (434)
Q Consensus 376 ~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l 426 (434)
...++.++|+++|+++|.+++..++|++|+++++++++ +| .+++.++++++
T Consensus 390 ~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~ 446 (449)
T PLN02173 390 SGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKI 446 (449)
T ss_pred CCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 12469999999999999876678999999999999984 55 77889998886
No 10
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=6.1e-53 Score=413.03 Aligned_cols=422 Identities=28% Similarity=0.469 Sum_probs=303.6
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcc--cCCC--CeEEEEecCCCCCCCCCCCCCCCCCCC------
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQE--KFST--SIQLIDLQLPCTFPELHDPYNHTTKNI------ 70 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~--~~~~--g~~f~~~~~~~~~~~~~~~~~~~~~~~------ 70 (434)
|||++|++.||+.|+.+||+|||++++.+...+.+.+.. +... .+.+..+++|...+++|++ .+.....
T Consensus 16 ~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g-~e~~~~~~~~~~~ 94 (482)
T PLN03007 16 HGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEG-CENVDFITSNNND 94 (482)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCC-ccccccccccccc
Confidence 799999999999999999999999999988777654321 1112 2355556556221366665 3332211
Q ss_pred -ccccHHHHHHHHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhc---cCC-CCCCC
Q 046033 71 -PRHLIPTLIEAFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQ---NSS-LKFPF 145 (434)
Q Consensus 71 -~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~---~~~-~~~p~ 145 (434)
...+...+......+.+.+.++++..+||+||+|.++.|+..+|+++|||.+.+++.+.+....+.. ... ...+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~ 174 (482)
T PLN03007 95 DSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCIRVHKPQKKVAS 174 (482)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHHHhcccccccCC
Confidence 1123334445556677888888888899999999999999999999999999999988766553221 000 00010
Q ss_pred --CCcCCCCcc------ccccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCC
Q 046033 146 --PEFDLPESE------IQKMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLV 217 (434)
Q Consensus 146 --~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~ 217 (434)
....++.+. ...+... ..................+ ++.+++|+|+++++++.+.+++.....+++|||+.
T Consensus 175 ~~~~~~~pg~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~vl~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~ 252 (482)
T PLN03007 175 SSEPFVIPDLPGDIVITEEQINDA-DEESPMGKFMKEVRESEVK-SFGVLVNSFYELESAYADFYKSFVAKRAWHIGPLS 252 (482)
T ss_pred CCceeeCCCCCCccccCHHhcCCC-CCchhHHHHHHHHHhhccc-CCEEEEECHHHHHHHHHHHHHhccCCCEEEEcccc
Confidence 000011111 0001100 0000001122233334444 88999999999999988888776666899999975
Q ss_pred CCCCC-------C--CCCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCcccc
Q 046033 218 QEPIY-------T--DNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIE 288 (434)
Q Consensus 218 ~~~~~-------~--~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~ 288 (434)
..... . ....+.++.+||+.+++++||||||||+...+.+.+.+++.+|+..+.+|||+++...... +..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~-~~~ 331 (482)
T PLN03007 253 LYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQG-EKE 331 (482)
T ss_pred ccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCccc-chh
Confidence 32110 0 0112467999999998889999999999888889999999999999999999998642211 112
Q ss_pred ccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHh---hc
Q 046033 289 EALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVAD---IG 365 (434)
Q Consensus 289 ~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~---~G 365 (434)
..+|++|.++. .+.|+++.+|+||.+||+|+++++|||||||||+.||+++|||+|++|.++||+.||+++++ .|
T Consensus 332 ~~lp~~~~~r~--~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G 409 (482)
T PLN03007 332 EWLPEGFEERT--KGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTG 409 (482)
T ss_pred hcCCHHHHHHh--ccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcce
Confidence 35899999988 78899999999999999999999999999999999999999999999999999999998864 45
Q ss_pred eeeeeccc---ccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHHHhh
Q 046033 366 VGLEVPRD---EINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK----KG--DDEEINVVEKLLQL 429 (434)
Q Consensus 366 ~g~~~~~~---~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l~~~ 429 (434)
+|+..... + ...+++++|+++|+++|.++++.+||++|++|++.+++ +| ..++.++++++.++
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 410 VSVGAKKLVKVK-GDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred eEeccccccccc-cCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 55432110 1 34589999999999999966567999999999999986 45 88899999988653
No 11
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.6e-52 Score=404.96 Aligned_cols=415 Identities=27% Similarity=0.437 Sum_probs=296.1
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhh--h-ccc-CCCCeEEEEec-CCCCCCCCCCCCCCCCCCCccccH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQN--L-QEK-FSTSIQLIDLQ-LPCTFPELHDPYNHTTKNIPRHLI 75 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~--~-~~~-~~~g~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 75 (434)
|||++|++.||+.|+.+|..|||++++.+...+.+. . +.. ...++.++.++ +| +|+|.+ .+... +..
T Consensus 18 qGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p---dglp~~-~~~~~----~~~ 89 (480)
T PLN02555 18 QGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE---DGWAED-DPRRQ----DLD 89 (480)
T ss_pred cccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC---CCCCCC-ccccc----CHH
Confidence 799999999999999999999999999766655421 1 000 11122233332 35 577765 33221 222
Q ss_pred HHHHHHHHHhHHHHHHHHhhc----CC-CEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCC--CCC---
Q 046033 76 PTLIEAFDAAKPAFCNVLETL----KP-TLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLK--FPF--- 145 (434)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~----~p-DlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~--~p~--- 145 (434)
..+......+.+.+.++++.. +| ++||+|.+..|+..+|+++|||.+.+++.+.+....+.+..... ++.
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~~~~~~~~ 169 (480)
T PLN02555 90 LYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLVPFPTETE 169 (480)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCCCcccccC
Confidence 223333334456666666642 44 99999999999999999999999999999998877543321110 110
Q ss_pred -----CCcCCCCccccccccccccccCCchh---HHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCC
Q 046033 146 -----PEFDLPESEIQKMTQFKHRIVNGTEN---RDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLV 217 (434)
Q Consensus 146 -----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~ 217 (434)
....+|.+....+..++......... +.+....... ++.+++|||.++|+.+++.++... + ++.|||+.
T Consensus 170 ~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~-a~~vlvNTf~eLE~~~~~~l~~~~-~-v~~iGPl~ 246 (480)
T PLN02555 170 PEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDK-PFCILIDTFQELEKEIIDYMSKLC-P-IKPVGPLF 246 (480)
T ss_pred CCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhccc-CCEEEEEchHHHhHHHHHHHhhCC-C-EEEeCccc
Confidence 01112222222233332211111111 1122233444 889999999999999998886643 3 99999996
Q ss_pred CCCC---CC--C--CCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCcccccc
Q 046033 218 QEPI---YT--D--NNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEA 290 (434)
Q Consensus 218 ~~~~---~~--~--~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~ 290 (434)
.... .. . ...++++.+||+.+++++||||||||+...+.+.+.+++.++++.+.+|||++.............
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~ 326 (480)
T PLN02555 247 KMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHV 326 (480)
T ss_pred CccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhc
Confidence 4211 01 1 234567999999998888999999999988999999999999999999999987431111011235
Q ss_pred CchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhh-ceeee
Q 046033 291 LPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADI-GVGLE 369 (434)
Q Consensus 291 ~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~-G~g~~ 369 (434)
+|+++.++. ..|..+.+|+||..||.|+++++|||||||||+.||+++|||+|++|+++||+.||+++++. |+|+.
T Consensus 327 lp~~~~~~~---~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~ 403 (480)
T PLN02555 327 LPEEFLEKA---GDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVR 403 (480)
T ss_pred CChhhhhhc---CCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEE
Confidence 788887654 34567779999999999999999999999999999999999999999999999999999887 99999
Q ss_pred ecccc-cCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHHHhh
Q 046033 370 VPRDE-INQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK----KG--DDEEINVVEKLLQL 429 (434)
Q Consensus 370 ~~~~~-~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l~~~ 429 (434)
+...+ ....+++++|+++|+++|.++++.++|+||++|++.+++ +| .+++.++|+++.+.
T Consensus 404 l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 404 LCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred ccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 94211 024589999999999999877778999999999999775 45 88899999998653
No 12
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.5e-52 Score=405.53 Aligned_cols=401 Identities=28% Similarity=0.476 Sum_probs=290.8
Q ss_pred CCChHHHHHHHHH--HHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHH
Q 046033 1 HGHITPYLALAKK--LSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTL 78 (434)
Q Consensus 1 ~GH~~p~l~lA~~--L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
|||++|++.||+. |+++|++|||++++.+.+.+.... .+ ..++++..+ | +|++++ .. ......+
T Consensus 19 ~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~-~~-~~~~~~~~~--~---~glp~~-~~------~~~~~~~ 84 (456)
T PLN02210 19 QGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE-KP-RRPVDLVFF--S---DGLPKD-DP------RAPETLL 84 (456)
T ss_pred cccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc-CC-CCceEEEEC--C---CCCCCC-cc------cCHHHHH
Confidence 7999999999999 569999999999998877654311 11 134666554 4 577766 31 1122222
Q ss_pred HHHHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCC--CCCCCC-----CcCCC
Q 046033 79 IEAFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSS--LKFPFP-----EFDLP 151 (434)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~--~~~p~~-----~~~~~ 151 (434)
......+.+.+.+++++.+||+||+|.+.+|+..+|+++|||.+.+++.+...+..+.+... ..++.. ...+|
T Consensus 85 ~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 164 (456)
T PLN02210 85 KSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFPDLEDLNQTVELP 164 (456)
T ss_pred HHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCCcccccCCeeeCC
Confidence 33333456677888888889999999999999999999999999999888877664432110 001100 01122
Q ss_pred C---ccccccccccccccCC--c-hhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCC----CC
Q 046033 152 E---SEIQKMTQFKHRIVNG--T-ENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQE----PI 221 (434)
Q Consensus 152 ~---~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~----~~ 221 (434)
. +....+...+.. ..+ . ....++...... ++.+++|||.++|+++++.++.. +++++|||+... ..
T Consensus 165 gl~~~~~~dl~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~l~~~--~~v~~VGPl~~~~~~~~~ 240 (456)
T PLN02210 165 ALPLLEVRDLPSFMLP-SGGAHFNNLMAEFADCLRY-VKWVLVNSFYELESEIIESMADL--KPVIPIGPLVSPFLLGDD 240 (456)
T ss_pred CCCCCChhhCChhhhc-CCchHHHHHHHHHHHhccc-CCEEEEeCHHHHhHHHHHHHhhc--CCEEEEcccCchhhcCcc
Confidence 2 122222222221 111 1 112233333444 78999999999999999888763 589999999631 10
Q ss_pred CC---------CCCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCc
Q 046033 222 YT---------DNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALP 292 (434)
Q Consensus 222 ~~---------~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p 292 (434)
.. .+..++++.+|++.+++++||||||||....+.+.+.+++.+|+.++.+|||+++..... ..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~------~~~ 314 (456)
T PLN02210 241 EEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKA------QNV 314 (456)
T ss_pred cccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccc------cch
Confidence 00 012356789999998888999999999988889999999999999999999999743111 122
Q ss_pred hhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHh-hceeeeec
Q 046033 293 QGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVAD-IGVGLEVP 371 (434)
Q Consensus 293 ~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~-~G~g~~~~ 371 (434)
+++.++. ...+..+.+|+||..||+|+++++|||||||||+.|++++|||+|++|.++||+.||+++++ .|+|+.+.
T Consensus 315 ~~~~~~~--~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~ 392 (456)
T PLN02210 315 QVLQEMV--KEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMR 392 (456)
T ss_pred hhHHhhc--cCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEe
Confidence 3344332 12334567999999999999999999999999999999999999999999999999999998 89999996
Q ss_pred ccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHHH
Q 046033 372 RDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK----KG--DDEEINVVEKLL 427 (434)
Q Consensus 372 ~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l~ 427 (434)
.++....+++++|+++|+++|.++++.++|+||++|++.+++ +| ..++.++++++.
T Consensus 393 ~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 393 NDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred ccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 421123589999999999999876677899999999999986 45 778889988863
No 13
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=8.5e-52 Score=396.52 Aligned_cols=412 Identities=28% Similarity=0.464 Sum_probs=298.2
Q ss_pred CCChHHHHHHHHHHHhC-CCEEEEEeCCCchhhhh-hhhcccC--CCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHH
Q 046033 1 HGHITPYLALAKKLSQQ-NFHIYFCSTPINLQSMS-QNLQEKF--STSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIP 76 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~-Gh~V~~~~~~~~~~~v~-~~~~~~~--~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (434)
|||++|++.||+.|+.+ |..|||++++.....+. +...+.. ..+++|+.+|.+ ..++++.. . .+...
T Consensus 14 qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~-~~~~l~~~-~-------~~~~~ 84 (470)
T PLN03015 14 LGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSV-DVDNLVEP-D-------ATIFT 84 (470)
T ss_pred cccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCC-ccccCCCC-C-------ccHHH
Confidence 79999999999999977 99999998886554331 1111111 126999999766 22344211 0 12333
Q ss_pred HHHHHHHHhHHHHHHHHhhc--CCCEEEEcCCCchHHHHHHHcCCc-EEEEecchHHHHHhhhcc------CCCC---CC
Q 046033 77 TLIEAFDAAKPAFCNVLETL--KPTLVIYDLFQPWAAEAAYQHDIA-AVAFVTIAAASFSFFLQN------SSLK---FP 144 (434)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~~--~pDlVi~d~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~------~~~~---~p 144 (434)
.+......+.+.+++++++. +|++||+|.++.|+..+|+++||| .+++++.+.+....+.+. .... .+
T Consensus 85 ~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~~~~~~ 164 (470)
T PLN03015 85 KMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGEYVDIK 164 (470)
T ss_pred HHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccccccCCCC
Confidence 44555556677888888865 689999999999999999999999 577777776655432211 0110 01
Q ss_pred CC--CcCCCCcccccccccc-ccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhc------CCceeeeCC
Q 046033 145 FP--EFDLPESEIQKMTQFK-HRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYIT------KKETIPVGP 215 (434)
Q Consensus 145 ~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~vGp 215 (434)
.+ ...++.+....+...+ .+.........+....+.. ++.+++|||.++|+.+++.++..+ .++++.|||
T Consensus 165 ~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~-a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~v~~VGP 243 (470)
T PLN03015 165 EPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPM-SDGVLVNTWEELQGNTLAALREDMELNRVMKVPVYPIGP 243 (470)
T ss_pred CeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhccc-CCEEEEechHHHhHHHHHHHHhhcccccccCCceEEecC
Confidence 00 0111212212222211 1111101111122223455 899999999999999999887642 256999999
Q ss_pred CCCCCCCCCCCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCC-------CCcccc
Q 046033 216 LVQEPIYTDNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSE-------GNFTIE 288 (434)
Q Consensus 216 l~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~-------~~~~~~ 288 (434)
+..... ....+.++.+|||.+++++||||||||....+.+.+.++..+|+.++..|||++..+.. +..+..
T Consensus 244 l~~~~~--~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~ 321 (470)
T PLN03015 244 IVRTNV--HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVS 321 (470)
T ss_pred CCCCcc--cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchh
Confidence 974321 11124579999999988899999999999999999999999999999999999974321 111123
Q ss_pred ccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHH-Hhhcee
Q 046033 289 EALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMV-ADIGVG 367 (434)
Q Consensus 289 ~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~-~~~G~g 367 (434)
+.+|++|.+++ ...++.+.+|+||..||+|+++++|||||||||+.|++++|||+|++|.++||+.||+++ +..|+|
T Consensus 322 ~~lp~~f~er~--~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg 399 (470)
T PLN03015 322 ASLPEGFLDRT--RGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVA 399 (470)
T ss_pred hcCChHHHHhh--ccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCee
Confidence 46899999998 778888889999999999999999999999999999999999999999999999999998 667999
Q ss_pred eeecccccCCcccHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHH
Q 046033 368 LEVPRDEINQRVRKEELARVFKQVVEQ--EEGQQIKRKAKELSESIKK----KG--DDEEINVVEKL 426 (434)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~v~~ll~~--~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l 426 (434)
+.+........++.++++++|+++|.+ |++.++|+||++|++.+++ +| .+++.+++..+
T Consensus 400 ~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 400 VRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred EEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 999521102358999999999999963 5578999999999999976 45 77788888765
No 14
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.7e-51 Score=400.73 Aligned_cols=414 Identities=23% Similarity=0.376 Sum_probs=300.4
Q ss_pred CCChHHHHHHHHHHHhCC----CEEEEEeCCCchh----hhhhhhccc--CCCCeEEEEecCCCCCCCCCCCCCCCCCCC
Q 046033 1 HGHITPYLALAKKLSQQN----FHIYFCSTPINLQ----SMSQNLQEK--FSTSIQLIDLQLPCTFPELHDPYNHTTKNI 70 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~G----h~V~~~~~~~~~~----~v~~~~~~~--~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~ 70 (434)
|||++|++.||+.|+.+| +.|||++++.... .+....... .+.+++|+.+|.+ . ++.+ .+
T Consensus 14 qGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~-~p~~-~e----- 83 (480)
T PLN00164 14 SGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAV---E-PPTD-AA----- 83 (480)
T ss_pred hhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCC---C-CCCc-cc-----
Confidence 799999999999999997 7999999876532 232211111 1126899888644 1 3333 21
Q ss_pred ccccHHHHHHHHHHhHHHHHHHHhhc--CCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccC-CC-----C
Q 046033 71 PRHLIPTLIEAFDAAKPAFCNVLETL--KPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNS-SL-----K 142 (434)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~-~~-----~ 142 (434)
.....+......+.+.+.+++++. ++++||+|++..|+..+|+++|||.+.+++.+.+....+.+.. .. .
T Consensus 84 --~~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~ 161 (480)
T PLN00164 84 --GVEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALDEEVAVE 161 (480)
T ss_pred --cHHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhcccccCc
Confidence 111223334445567777777765 4599999999999999999999999999999998877544321 00 0
Q ss_pred CCC-----CCcCCCCcccccccccccccc-CCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhc------CCce
Q 046033 143 FPF-----PEFDLPESEIQKMTQFKHRIV-NGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYIT------KKET 210 (434)
Q Consensus 143 ~p~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 210 (434)
++. ....++.+....+........ .....+......+.. ++.+++|||.++|+.+++.++... .+++
T Consensus 162 ~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~~~v 240 (480)
T PLN00164 162 FEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFME-AAGIIVNTAAELEPGVLAAIADGRCTPGRPAPTV 240 (480)
T ss_pred ccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhh-cCEEEEechHHhhHHHHHHHHhccccccCCCCce
Confidence 110 001111122222332221111 111122222233444 889999999999999999887642 1589
Q ss_pred eeeCCCCCCCC-CCCCCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCC------
Q 046033 211 IPVGPLVQEPI-YTDNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEG------ 283 (434)
Q Consensus 211 ~~vGpl~~~~~-~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~------ 283 (434)
+.|||+..... ......++++.+||+.+++++||||||||+...+.+.+.+++.+|+.++.+|||++......
T Consensus 241 ~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~ 320 (480)
T PLN00164 241 YPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPT 320 (480)
T ss_pred EEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCccccccccc
Confidence 99999963211 01123457899999999888999999999988888999999999999999999999854211
Q ss_pred CccccccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHH-H
Q 046033 284 NFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMV-A 362 (434)
Q Consensus 284 ~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~-~ 362 (434)
..+..+.+|+++.++. ...++.+.+|+||..||+|+++++|||||||||+.||+++|||||++|.++||+.||+++ +
T Consensus 321 ~~~~~~~lp~~~~~~~--~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~ 398 (480)
T PLN00164 321 DADLDELLPEGFLERT--KGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVA 398 (480)
T ss_pred ccchhhhCChHHHHHh--cCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHH
Confidence 0112345899999988 788898989999999999999999999999999999999999999999999999999877 5
Q ss_pred hhceeeeeccccc-CCcccHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHHHhh
Q 046033 363 DIGVGLEVPRDEI-NQRVRKEELARVFKQVVEQE--EGQQIKRKAKELSESIKK----KG--DDEEINVVEKLLQL 429 (434)
Q Consensus 363 ~~G~g~~~~~~~~-~~~~~~~~l~~~v~~ll~~~--~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l~~~ 429 (434)
..|+|+.+..++. .+.+++++|+++|+++|.++ +...+|++|++|++.+++ +| .+++.++++++.+-
T Consensus 399 ~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 399 DMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred HhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 5799999853210 12479999999999999853 367899999999999986 44 88899999998653
No 15
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=8e-52 Score=397.17 Aligned_cols=398 Identities=24% Similarity=0.414 Sum_probs=284.0
Q ss_pred CCChHHHHHHHHHHHhCC--CEEEE--EeCCCchhhhhhhhcc--cCCCCeEEEEecCCCCCCCCCCCCCCCCCCCcccc
Q 046033 1 HGHITPYLALAKKLSQQN--FHIYF--CSTPINLQSMSQNLQE--KFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHL 74 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~G--h~V~~--~~~~~~~~~v~~~~~~--~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (434)
|||++|++.||+.|+.+| +.|++ ..++.+...+...... ...++++|+.+|.+ .+.+.. ... . .+.
T Consensus 14 qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~~~~~-~~~--~--~~~ 85 (451)
T PLN03004 14 IGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAV---TPYSSS-STS--R--HHH 85 (451)
T ss_pred cchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCC---CCCCCc-ccc--c--cCH
Confidence 799999999999999998 55665 4444322222110000 11146999988644 222222 111 1 122
Q ss_pred HHHHHHHHHHhHHHHHHHHhhc----CCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccC-C------CCC
Q 046033 75 IPTLIEAFDAAKPAFCNVLETL----KPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNS-S------LKF 143 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~----~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~-~------~~~ 143 (434)
...+......+...+.+++++. ++++||+|++..|+..+|+++|||.+.+++.+.+....+.+.. . ...
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~~ 165 (451)
T PLN03004 86 ESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPGKNL 165 (451)
T ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccccccccc
Confidence 2233334445556666666654 3499999999999999999999999999999998887554321 0 000
Q ss_pred C----CCCcCCCCcccccccccccccc-CCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcC-CceeeeCCCC
Q 046033 144 P----FPEFDLPESEIQKMTQFKHRIV-NGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITK-KETIPVGPLV 217 (434)
Q Consensus 144 p----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vGpl~ 217 (434)
+ .....++.+....+..+..... .......+....+.. ++.+++|||.++|+.+++.++..+. ++++.|||+.
T Consensus 166 ~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~-~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~vGPl~ 244 (451)
T PLN03004 166 KDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSK-SSGIIINTFDALENRAIKAITEELCFRNIYPIGPLI 244 (451)
T ss_pred ccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcc-cCeeeeeeHHHhHHHHHHHHHhcCCCCCEEEEeeec
Confidence 0 0001122222222332222111 001222333344444 7889999999999999999876543 5899999996
Q ss_pred CCCCCC-C-CCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCc---cccccCc
Q 046033 218 QEPIYT-D-NNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNF---TIEEALP 292 (434)
Q Consensus 218 ~~~~~~-~-~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~---~~~~~~p 292 (434)
...... . ...+.++.+|||.+++++||||||||....+.+.+.+|..+|+.++.+|||++........ +....+|
T Consensus 245 ~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp 324 (451)
T PLN03004 245 VNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLP 324 (451)
T ss_pred cCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCC
Confidence 432101 1 1123569999999988899999999998899999999999999999999999985321100 1123489
Q ss_pred hhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHh-hceeeeec
Q 046033 293 QGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVAD-IGVGLEVP 371 (434)
Q Consensus 293 ~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~-~G~g~~~~ 371 (434)
++|.+++ ...|+.+.+|+||.+||+|+++++|||||||||+.||+++|||+|++|.+.||+.||+++++ .|+|+.+.
T Consensus 325 ~gf~er~--~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~ 402 (451)
T PLN03004 325 EGFLSRT--EDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMN 402 (451)
T ss_pred hHHHHhc--cCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEec
Confidence 9999998 88899999999999999999999999999999999999999999999999999999999986 69999997
Q ss_pred ccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh
Q 046033 372 RDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK 413 (434)
Q Consensus 372 ~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~ 413 (434)
.++ ...+++++|+++|+++|. +++||++|+++++..+.
T Consensus 403 ~~~-~~~~~~e~l~~av~~vm~---~~~~r~~a~~~~~~a~~ 440 (451)
T PLN03004 403 ESE-TGFVSSTEVEKRVQEIIG---ECPVRERTMAMKNAAEL 440 (451)
T ss_pred CCc-CCccCHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH
Confidence 422 235799999999999998 68999999999998875
No 16
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.7e-51 Score=397.82 Aligned_cols=392 Identities=22% Similarity=0.407 Sum_probs=285.9
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|||++|++.||+.|+.+|++|||++++.+...+.+... . ..|++|+.+ | ++++.+ . ..++. .+..
T Consensus 17 qGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~-~-~~~i~~v~l--p---~g~~~~-~------~~~~~-~l~~ 81 (448)
T PLN02562 17 QGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD-P-KLGITFMSI--S---DGQDDD-P------PRDFF-SIEN 81 (448)
T ss_pred ccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC-C-CCCEEEEEC--C---CCCCCC-c------cccHH-HHHH
Confidence 79999999999999999999999999988776654211 1 137999877 4 344322 1 11222 2333
Q ss_pred HHH-HhHHHHHHHHhhcC----CCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccC----C-----CCCCCC
Q 046033 81 AFD-AAKPAFCNVLETLK----PTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNS----S-----LKFPFP 146 (434)
Q Consensus 81 ~~~-~~~~~~~~~l~~~~----pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~----~-----~~~p~~ 146 (434)
.+. .+.+.+.+++++.. +++||+|++..|+..+|+++|||.+.+++.+.+....+.+.. . .+.|..
T Consensus 82 a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (448)
T PLN02562 82 SMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPRQ 161 (448)
T ss_pred HHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccccccccc
Confidence 333 45666777777542 379999999999999999999999999998887666432110 0 000100
Q ss_pred ---CcCCC---Cccccccccccccc---cCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhh----cCCceeee
Q 046033 147 ---EFDLP---ESEIQKMTQFKHRI---VNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYI----TKKETIPV 213 (434)
Q Consensus 147 ---~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v 213 (434)
...+| .+....+..++... ......+.+....... ++.+++|||.++|+..++..... ..++++.|
T Consensus 162 ~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~~i 240 (448)
T PLN02562 162 LEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKS-LRWILMNSFKDEEYDDVKNHQASYNNGQNPQILQI 240 (448)
T ss_pred ccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhcccc-CCEEEEcChhhhCHHHHHHHHhhhccccCCCEEEe
Confidence 00112 12222222222111 0111222233334444 78999999999999887765432 34689999
Q ss_pred CCCCCCCCC---CC--CCCchhhhhhhcCCCCCceEEEEecCcc-cCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccc
Q 046033 214 GPLVQEPIY---TD--NNNDTKIMDWLSRKEPSSVVYVSFGSEY-FLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTI 287 (434)
Q Consensus 214 Gpl~~~~~~---~~--~~~~~~~~~~l~~~~~~~vV~vs~Gs~~-~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~ 287 (434)
||+...... .. .+.+.++.+||++++++++|||||||+. ..+.+.+.+++.++++.+.+|||++..+.
T Consensus 241 Gpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~------ 314 (448)
T PLN02562 241 GPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW------ 314 (448)
T ss_pred cCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc------
Confidence 999654210 01 1234567799999988889999999976 56889999999999999999999986421
Q ss_pred cccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHh-hce
Q 046033 288 EEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVAD-IGV 366 (434)
Q Consensus 288 ~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~-~G~ 366 (434)
.+.+|+++.++. .+|+.+.+|+||..||+|+++++|||||||||+.||+++|||+|++|.++||+.||+++++ .|+
T Consensus 315 ~~~l~~~~~~~~---~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~ 391 (448)
T PLN02562 315 REGLPPGYVERV---SKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKI 391 (448)
T ss_pred hhhCCHHHHHHh---ccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCc
Confidence 124787877665 3466777999999999999999999999999999999999999999999999999999987 599
Q ss_pred eeeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh---cc--hHHHHHHHHHH
Q 046033 367 GLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK---KG--DDEEINVVEKL 426 (434)
Q Consensus 367 g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~---~~--~~~~~~~ve~l 426 (434)
|+.+. .+++++|+++|+++|. +++||+||+++++++.+ +| .+++.++|+++
T Consensus 392 g~~~~------~~~~~~l~~~v~~~l~---~~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 392 GVRIS------GFGQKEVEEGLRKVME---DSGMGERLMKLRERAMGEEARLRSMMNFTTLKDEL 447 (448)
T ss_pred eeEeC------CCCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 98884 3689999999999998 68999999999999976 24 77888988875
No 17
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.7e-51 Score=400.93 Aligned_cols=399 Identities=27% Similarity=0.466 Sum_probs=290.1
Q ss_pred CCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHH
Q 046033 1 HGHITPYLALAKKLSQQ--NFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTL 78 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
|||++|++.||++|+.+ ||+|||++++.+...+.+... ..|++|+.+| ++++.. .... .+....+
T Consensus 21 ~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~---~~gi~fv~lp-----~~~p~~-~~~~----~~~~~~~ 87 (459)
T PLN02448 21 RGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK---PDNIRFATIP-----NVIPSE-LVRA----ADFPGFL 87 (459)
T ss_pred cccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC---CCCEEEEECC-----CCCCCc-cccc----cCHHHHH
Confidence 79999999999999999 999999999998887776211 2489998874 334433 2111 1222333
Q ss_pred HHHHHHhHHHHHHHHhhc--CCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccC----CCCCCCC------
Q 046033 79 IEAFDAAKPAFCNVLETL--KPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNS----SLKFPFP------ 146 (434)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~----~~~~p~~------ 146 (434)
......+.+.+.+++++. ++|+||+|.+++|+..+|+++|||++.+++.+......+.+.. ...+|..
T Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (459)
T PLN02448 88 EAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVELSESGE 167 (459)
T ss_pred HHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCccccccC
Confidence 333334566677777754 5799999999999999999999999999999986665332211 0000100
Q ss_pred --CcCCCC---ccccccccccccccCCchhHHHHHHh---hhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCC
Q 046033 147 --EFDLPE---SEIQKMTQFKHRIVNGTENRDRFLKA---IDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQ 218 (434)
Q Consensus 147 --~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~ 218 (434)
...+|. +....+..++. ..+......+... ... ++.+++|||.+||+.+++.+...++.+++.|||+..
T Consensus 168 ~~~~~iPg~~~l~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~-~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~~ 244 (459)
T PLN02448 168 ERVDYIPGLSSTRLSDLPPIFH--GNSRRVLKRILEAFSWVPK-AQYLLFTSFYELEAQAIDALKSKFPFPVYPIGPSIP 244 (459)
T ss_pred CccccCCCCCCCChHHCchhhc--CCchHHHHHHHHHHhhccc-CCEEEEccHHHhhHHHHHHHHhhcCCceEEecCccc
Confidence 001221 11112232222 1111212222222 333 678999999999999999988777678999999964
Q ss_pred CCCC----C---CCCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccC
Q 046033 219 EPIY----T---DNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEAL 291 (434)
Q Consensus 219 ~~~~----~---~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~ 291 (434)
.... . ..+.+.++.+|++.++++++|||||||....+.+.+.+++.+|++.+.+|||++....
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~---------- 314 (459)
T PLN02448 245 YMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA---------- 314 (459)
T ss_pred ccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch----------
Confidence 3110 0 0112347889999988889999999999888889999999999999999999875321
Q ss_pred chhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHh-hceeeee
Q 046033 292 PQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVAD-IGVGLEV 370 (434)
Q Consensus 292 p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~-~G~g~~~ 370 (434)
.++.+. ...|..+.+|+||.+||+|+++++|||||||||+.||+++|||+|++|.++||+.||+++++ .|+|+.+
T Consensus 315 -~~~~~~---~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~ 390 (459)
T PLN02448 315 -SRLKEI---CGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRV 390 (459)
T ss_pred -hhHhHh---ccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEE
Confidence 122221 12366777999999999999999999999999999999999999999999999999999998 4888887
Q ss_pred cccc-cCCcccHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHHHhh
Q 046033 371 PRDE-INQRVRKEELARVFKQVVEQ--EEGQQIKRKAKELSESIKK----KG--DDEEINVVEKLLQL 429 (434)
Q Consensus 371 ~~~~-~~~~~~~~~l~~~v~~ll~~--~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l~~~ 429 (434)
.... ....+++++|+++|+++|.+ ++..+||++|++|++.+++ +| .+++.++++++.+.
T Consensus 391 ~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~~ 458 (459)
T PLN02448 391 KREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQG 458 (459)
T ss_pred ecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcc
Confidence 5311 02357999999999999985 3467999999999999976 45 88899999988653
No 18
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-51 Score=394.11 Aligned_cols=411 Identities=21% Similarity=0.393 Sum_probs=290.9
Q ss_pred CCChHHHHHHHHHHHhCC--CEEEEEeCCCchh-hhhhhhcc--cCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccH
Q 046033 1 HGHITPYLALAKKLSQQN--FHIYFCSTPINLQ-SMSQNLQE--KFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLI 75 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~G--h~V~~~~~~~~~~-~v~~~~~~--~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (434)
|||++|++.||+.|+.+| ..|||++++.+.. .+...... ....+++|+.+|.. +..+.. . .. .+..
T Consensus 14 qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~~~~~~-~-~~----~~~~ 84 (468)
T PLN02207 14 VGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPEL---EEKPTL-G-GT----QSVE 84 (468)
T ss_pred hhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCC---CCCCcc-c-cc----cCHH
Confidence 799999999999999998 9999999987652 22211110 11136999888632 112211 1 11 1122
Q ss_pred HHHHHHHHHh----HHHHHHHHhhc----CC-CEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhcc-CC--C--
Q 046033 76 PTLIEAFDAA----KPAFCNVLETL----KP-TLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQN-SS--L-- 141 (434)
Q Consensus 76 ~~~~~~~~~~----~~~~~~~l~~~----~p-DlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~-~~--~-- 141 (434)
..+......+ .+.+.+++++. +| ++||+|.++.|+..+|+++|||.+.+++.+.+....+.+. .. +
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~~~~ 164 (468)
T PLN02207 85 AYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHSKDT 164 (468)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcccccc
Confidence 2222333233 33455555532 34 8999999999999999999999999999998777643321 10 0
Q ss_pred CCC--C--CCcCCCC----ccccccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhh-hcCCceee
Q 046033 142 KFP--F--PEFDLPE----SEIQKMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSY-ITKKETIP 212 (434)
Q Consensus 142 ~~p--~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 212 (434)
..+ . ....+|. +....+..++.. ........+....+.+ ++.+++|||+++|+++++..+. ...++++.
T Consensus 165 ~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~-~~~~~~~~~~~~~~~~-~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~ 242 (468)
T PLN02207 165 SVFVRNSEEMLSIPGFVNPVPANVLPSALFV-EDGYDAYVKLAILFTK-ANGILVNSSFDIEPYSVNHFLDEQNYPSVYA 242 (468)
T ss_pred ccCcCCCCCeEECCCCCCCCChHHCcchhcC-CccHHHHHHHHHhccc-CCEEEEEchHHHhHHHHHHHHhccCCCcEEE
Confidence 011 0 0011222 222223322221 1112222333334555 8899999999999998888754 23368999
Q ss_pred eCCCCCCCCC-CC---CCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCcccc
Q 046033 213 VGPLVQEPIY-TD---NNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIE 288 (434)
Q Consensus 213 vGpl~~~~~~-~~---~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~ 288 (434)
|||+...... .. ...++++.+|||++++++||||||||....+.+.+.+++.+|++++.+|||++...... ..
T Consensus 243 VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~---~~ 319 (468)
T PLN02207 243 VGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVT---ND 319 (468)
T ss_pred ecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCcc---cc
Confidence 9999643210 10 01236799999999888999999999998899999999999999999999999853211 12
Q ss_pred ccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHh-hcee
Q 046033 289 EALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVAD-IGVG 367 (434)
Q Consensus 289 ~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~-~G~g 367 (434)
+.+|++|.++. .. +..+.+|+||.+||+|+++++|||||||||+.||+++|||+|++|.++||+.||+++++ .|+|
T Consensus 320 ~~lp~~f~er~--~~-~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG 396 (468)
T PLN02207 320 DLLPEGFLDRV--SG-RGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLA 396 (468)
T ss_pred ccCCHHHHhhc--CC-CeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCce
Confidence 45889998776 43 44666999999999999999999999999999999999999999999999999998766 7999
Q ss_pred eeecccc---cCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHHHhh
Q 046033 368 LEVPRDE---INQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK----KG--DDEEINVVEKLLQL 429 (434)
Q Consensus 368 ~~~~~~~---~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l~~~ 429 (434)
+.+..+. ..+.++.++|+++|+++|.+ ++++||+||++|++.+++ +| .+++.++++++...
T Consensus 397 v~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~~ 466 (468)
T PLN02207 397 VELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIGI 466 (468)
T ss_pred EEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 9774210 01346999999999999973 378999999999999985 45 88899999998654
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.4e-50 Score=389.09 Aligned_cols=407 Identities=25% Similarity=0.437 Sum_probs=286.6
Q ss_pred CCChHHHHHHHHHHHh-CCCEEEEEeCCCch-hhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHH
Q 046033 1 HGHITPYLALAKKLSQ-QNFHIYFCSTPINL-QSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTL 78 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~-~Gh~V~~~~~~~~~-~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
|||++|++.||+.|+. +|+.|||++++.+. ..+.... .. ..+++|+.+ + +|++.+ ..... .+....+
T Consensus 14 qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~-~~-~~~i~~~~i--~---dglp~g-~~~~~---~~~~~~~ 82 (455)
T PLN02152 14 QGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNH-NN-VENLSFLTF--S---DGFDDG-VISNT---DDVQNRL 82 (455)
T ss_pred cccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccC-CC-CCCEEEEEc--C---CCCCCc-ccccc---ccHHHHH
Confidence 7999999999999995 69999999998542 2111100 01 136889877 4 577765 32211 1233344
Q ss_pred HHHHHHhHHHHHHHHhhc----C-CCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCC-CCCCCCCcCCCC
Q 046033 79 IEAFDAAKPAFCNVLETL----K-PTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSS-LKFPFPEFDLPE 152 (434)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~----~-pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~ 152 (434)
......+.+.+.+++++. + +++||+|.+..|+..+|+++|||.+.+++.+.+....+.+... ...+.....++.
T Consensus 83 ~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~iPglp~ 162 (455)
T PLN02152 83 VNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGNNSVFEFPNLPS 162 (455)
T ss_pred HHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccCCCeeecCCCCC
Confidence 444445556666666642 3 4999999999999999999999999999999988875443211 100000111222
Q ss_pred ccccccccccccccCC---chhHHHHHHhhhc-CCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCC----CC-C
Q 046033 153 SEIQKMTQFKHRIVNG---TENRDRFLKAIDL-SCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEP----IY-T 223 (434)
Q Consensus 153 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~----~~-~ 223 (434)
+....+..++...... .....+....+.. .++.+++|||.++|+.+++.++. .+++.|||+.... .. .
T Consensus 163 l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v~~VGPL~~~~~~~~~~~~ 239 (455)
T PLN02152 163 LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEMVAVGPLLPAEIFTGSESG 239 (455)
T ss_pred CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCEEEEcccCccccccccccC
Confidence 2222233333211111 1122233333321 14689999999999999988754 2699999996421 00 0
Q ss_pred C----CCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCC----ccccc--cCch
Q 046033 224 D----NNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGN----FTIEE--ALPQ 293 (434)
Q Consensus 224 ~----~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~----~~~~~--~~p~ 293 (434)
. .+.+.++.+|||.+++++||||||||+...+.+.+.+++.+|+.++.+|||++....... .+..+ .+|+
T Consensus 240 ~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~ 319 (455)
T PLN02152 240 KDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIA 319 (455)
T ss_pred ccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccch
Confidence 0 122457999999998889999999999999999999999999999999999997532110 00001 2467
Q ss_pred hHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhh-ceeeeecc
Q 046033 294 GFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADI-GVGLEVPR 372 (434)
Q Consensus 294 ~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~-G~g~~~~~ 372 (434)
+|.++. . .+..+.+|+||.+||+|+++++|||||||||+.|++++|||+|++|.++||+.||+++++. |+|+.+..
T Consensus 320 ~f~e~~--~-~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~ 396 (455)
T PLN02152 320 GFRHEL--E-EVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRE 396 (455)
T ss_pred hHHHhc--c-CCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeec
Confidence 887765 3 3446679999999999999999999999999999999999999999999999999999984 66666643
Q ss_pred cccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHH
Q 046033 373 DEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK----KG--DDEEINVVEKL 426 (434)
Q Consensus 373 ~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l 426 (434)
++ .+.++.++|+++|+++|.+ ++.+||++|++|++.+++ +| ..++.++++++
T Consensus 397 ~~-~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 397 NS-EGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred Cc-CCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 21 2346999999999999973 256799999999998876 34 77888888875
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.3e-50 Score=394.28 Aligned_cols=410 Identities=24% Similarity=0.395 Sum_probs=289.5
Q ss_pred CCChHHHHHHHHHHHhCC--CEEEEEeCCCchhhhh--hhhcc----cCCCCeEEEEecCCCCCCCCCCCCCCCCCCCcc
Q 046033 1 HGHITPYLALAKKLSQQN--FHIYFCSTPINLQSMS--QNLQE----KFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPR 72 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~G--h~V~~~~~~~~~~~v~--~~~~~----~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (434)
|||++|++.||+.|+.+| ..|||++++.+...+. ....+ ....+++|+.+|.+ . +.. ... .
T Consensus 13 qGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---~--~~~-~~~-----~ 81 (481)
T PLN02554 13 IGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAG---D--QPT-TED-----P 81 (481)
T ss_pred hhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCC---C--CCc-ccc-----h
Confidence 799999999999999998 8899999987654221 10000 01246999888655 2 111 110 1
Q ss_pred ccHHHHHHHHHHhHHHHHHHHhh-----cCC-CEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCC---C--
Q 046033 73 HLIPTLIEAFDAAKPAFCNVLET-----LKP-TLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSS---L-- 141 (434)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~-----~~p-DlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~---~-- 141 (434)
.....+......+.+.+.+++.. .+| ++||+|+++.|+..+|+++|||++.+++.+.+....+.+... .
T Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~~~~~~ 161 (481)
T PLN02554 82 TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQMLYDEKK 161 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhhccccc
Confidence 22222333333334444444432 133 899999999999999999999999999999988875443210 0
Q ss_pred ----CCCCC--CcCCCCc----cccccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhh--cCCc
Q 046033 142 ----KFPFP--EFDLPES----EIQKMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYI--TKKE 209 (434)
Q Consensus 142 ----~~p~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 209 (434)
.++.. ...+|.+ ....+...+.. ........+....+.. ++.+++|+|.++++.+...+.+. ..++
T Consensus 162 ~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~-~~~~~~~~~~~~~~~~-~~gvlvNt~~eLe~~~~~~l~~~~~~~~~ 239 (481)
T PLN02554 162 YDVSELEDSEVELDVPSLTRPYPVKCLPSVLLS-KEWLPLFLAQARRFRE-MKGILVNTVAELEPQALKFFSGSSGDLPP 239 (481)
T ss_pred cCccccCCCCceeECCCCCCCCCHHHCCCcccC-HHHHHHHHHHHHhccc-CCEEEEechHHHhHHHHHHHHhcccCCCC
Confidence 11110 0112221 11112221110 1111122233334444 88999999999999988887753 2368
Q ss_pred eeeeCCCCC-CCCCC--CCCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCC----
Q 046033 210 TIPVGPLVQ-EPIYT--DNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSE---- 282 (434)
Q Consensus 210 ~~~vGpl~~-~~~~~--~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~---- 282 (434)
++.|||+.. ..... ....+.++.+||+++++++||||||||+...+.+.+.+++.+|++++.+|||+++....
T Consensus 240 v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~ 319 (481)
T PLN02554 240 VYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMK 319 (481)
T ss_pred EEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccc
Confidence 999999942 21101 12345689999999888889999999998888999999999999999999999975311
Q ss_pred ----CCccccccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHH
Q 046033 283 ----GNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNA 358 (434)
Q Consensus 283 ----~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na 358 (434)
+..+..+.+|++|.++. .. |..+.+|+||.+||.|+++++|||||||||+.||+++|||||++|.++||+.||
T Consensus 320 ~~~~~~~~~~~~lp~~~~~r~--~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na 396 (481)
T PLN02554 320 EPPGEFTNLEEILPEGFLDRT--KD-IGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNA 396 (481)
T ss_pred cccccccchhhhCChHHHHHh--cc-CceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhH
Confidence 00111234688888776 43 446669999999999999999999999999999999999999999999999999
Q ss_pred -HHHHhhceeeeecccc-------cCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh----cc--hHHHHHHHH
Q 046033 359 -KMVADIGVGLEVPRDE-------INQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK----KG--DDEEINVVE 424 (434)
Q Consensus 359 -~~~~~~G~g~~~~~~~-------~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve 424 (434)
.+++++|+|+.+.+.. ....+++++|+++|+++|.+ +++||+||+++++.+++ +| ..++.++++
T Consensus 397 ~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~--~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~ 474 (481)
T PLN02554 397 FEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQ--DSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQ 474 (481)
T ss_pred HHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 5688999999986310 02468999999999999963 58999999999999985 45 778999999
Q ss_pred HHHh
Q 046033 425 KLLQ 428 (434)
Q Consensus 425 ~l~~ 428 (434)
++.+
T Consensus 475 ~~~~ 478 (481)
T PLN02554 475 DVTK 478 (481)
T ss_pred HHHh
Confidence 8854
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.6e-50 Score=391.63 Aligned_cols=411 Identities=26% Similarity=0.427 Sum_probs=282.8
Q ss_pred CCChHHHHHHHHHHHhCC---CEEEEEeCCCchh-----hhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCcc
Q 046033 1 HGHITPYLALAKKLSQQN---FHIYFCSTPINLQ-----SMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPR 72 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~G---h~V~~~~~~~~~~-----~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (434)
|||++|++.||+.|+.+| +.||+..++.... .+... . ...++|+|+.+|.+ .+ ++. .+.....
T Consensus 14 qGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~-~-~~~~~i~~~~lp~~---~~-p~~-~~~~~~~-- 84 (475)
T PLN02167 14 TGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSL-I-ASEPRIRLVTLPEV---QD-PPP-MELFVKA-- 84 (475)
T ss_pred hhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhc-c-cCCCCeEEEECCCC---CC-Ccc-ccccccc--
Confidence 799999999999999998 3567776543221 11110 0 11136999998655 22 222 1100100
Q ss_pred ccHHHHHHHHHHhHHHHHHHHhhc----------CCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhcc-CC-
Q 046033 73 HLIPTLIEAFDAAKPAFCNVLETL----------KPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQN-SS- 140 (434)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~----------~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~-~~- 140 (434)
....+......+.+.+.+.+++. ++++||+|.++.|+..+|+++|||.+.+++.+.+....+.+. ..
T Consensus 85 -~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~~~ 163 (475)
T PLN02167 85 -SEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPERH 163 (475)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHHhc
Confidence 11122222323333333333321 349999999999999999999999999999998777644321 10
Q ss_pred ---C-CCCCC----CcCCCCc----cccccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhc--
Q 046033 141 ---L-KFPFP----EFDLPES----EIQKMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYIT-- 206 (434)
Q Consensus 141 ---~-~~p~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 206 (434)
. .++.. ...+|.+ ....+...... ................ ++.+++|||.++|+++++.++...
T Consensus 164 ~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~-~~~~~~~~~~~~~~~~-a~~vlvNTf~eLE~~~~~~l~~~~~~ 241 (475)
T PLN02167 164 RKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFM-KESYEAWVEIAERFPE-AKGILVNSFTELEPNAFDYFSRLPEN 241 (475)
T ss_pred cccccccccCCCCCeeECCCCCCCCChhhCchhhhC-cchHHHHHHHHHhhcc-cCEeeeccHHHHHHHHHHHHHhhccc
Confidence 0 11000 0112221 11112211110 0111122233334444 889999999999999998886531
Q ss_pred CCceeeeCCCCCCCCC---CC-CCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCC
Q 046033 207 KKETIPVGPLVQEPIY---TD-NNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSE 282 (434)
Q Consensus 207 ~~~~~~vGpl~~~~~~---~~-~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~ 282 (434)
.+++++|||+...... .. ...+.++.+||+.+++++||||||||+...+.+.+.+++.+++.++.+|||+++....
T Consensus 242 ~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~ 321 (475)
T PLN02167 242 YPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPA 321 (475)
T ss_pred CCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcc
Confidence 1589999999642110 10 1123679999999988899999999998888999999999999999999999975421
Q ss_pred CCccccccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHH-H
Q 046033 283 GNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKM-V 361 (434)
Q Consensus 283 ~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~-~ 361 (434)
...+....+|++|.+++ ...+ .+.+|+||..||+|+++++|||||||||+.||+++|||||++|.++||+.||++ +
T Consensus 322 ~~~~~~~~lp~~~~er~--~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~ 398 (475)
T PLN02167 322 EYASPYEPLPEGFMDRV--MGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMV 398 (475)
T ss_pred cccchhhhCChHHHHHh--ccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 11111245899998877 5555 455999999999999999999999999999999999999999999999999976 7
Q ss_pred Hhhceeeeeccc---ccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh----cc--hHHHHHHHHHHHh
Q 046033 362 ADIGVGLEVPRD---EINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK----KG--DDEEINVVEKLLQ 428 (434)
Q Consensus 362 ~~~G~g~~~~~~---~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~----~~--~~~~~~~ve~l~~ 428 (434)
+..|+|+.+... +....+++++|+++|+++|.+ +.+||++|+++++.+++ +| ..++.++|+++..
T Consensus 399 ~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~--~~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~ 472 (475)
T PLN02167 399 KELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDG--EDVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLG 472 (475)
T ss_pred HHhCeeEEeecccccccCCcccHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 788999998632 101346999999999999984 24899999999999976 45 7889999998854
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=5.7e-46 Score=364.35 Aligned_cols=388 Identities=16% Similarity=0.201 Sum_probs=268.7
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchh--hhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCC------CCCc-
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQ--SMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTT------KNIP- 71 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~--~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~------~~~~- 71 (434)
.+|+.-+-+++++|++|||+||++++..... .... .+++.+.++.. .+.+... .... ....
T Consensus 32 ~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~-------~~~~~i~~~~~--~~~~~~~-~~~~~~~~~~~~~~~ 101 (507)
T PHA03392 32 YSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLC-------GNITEIDASLS--VEYFKKL-VKSSAVFRKRGVVAD 101 (507)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCC-------CCEEEEEcCCC--hHHHHHH-HhhhhHHHhhhhhhh
Confidence 4799999999999999999999997753211 1112 45665554211 0100000 0000 0000
Q ss_pred -----cccHHHHHHHHHHh--HHHHHHHHh--hcCCCEEEEcCCCchHHHHHHHc-CCcEEEEecchHHHH--Hhhh-cc
Q 046033 72 -----RHLIPTLIEAFDAA--KPAFCNVLE--TLKPTLVIYDLFQPWAAEAAYQH-DIAAVAFVTIAAASF--SFFL-QN 138 (434)
Q Consensus 72 -----~~~~~~~~~~~~~~--~~~~~~~l~--~~~pDlVi~d~~~~~~~~~A~~~-giP~v~~~~~~~~~~--~~~~-~~ 138 (434)
......+...++.+ .+.+.++|+ +.++|+||+|.+..|++.+|+++ ++|.|.+++...... .... .|
T Consensus 102 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~gg~p 181 (507)
T PHA03392 102 SSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMGAVS 181 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhhccCC
Confidence 00011112222222 456678887 77899999998889999999999 999998888655433 2333 55
Q ss_pred CCCCC-CCCCcCCC-------Cccccccccccc-cccCCchhH----H--------HHHHhhhcCCcEEEEcCCchhcHH
Q 046033 139 SSLKF-PFPEFDLP-------ESEIQKMTQFKH-RIVNGTENR----D--------RFLKAIDLSCKLVLVKTSREIESK 197 (434)
Q Consensus 139 ~~~~~-p~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~----~--------~~~~~~~~~~~~~~~~~~~~~~~~ 197 (434)
..+.+ |....... ++.+........ ......+.. . .+.+... +.+.+++|+.+.++.+
T Consensus 182 ~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~-~~~l~lvns~~~~d~~ 260 (507)
T PHA03392 182 RHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRN-RVQLLFVNVHPVFDNN 260 (507)
T ss_pred CCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHh-CCcEEEEecCccccCC
Confidence 55443 44321111 111110000000 000000001 1 1122222 3788999998888763
Q ss_pred HHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcCCCCCceEEEEecCccc---CCHHHHHHHHHHHhhCCCcEE
Q 046033 198 DLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSRKEPSSVVYVSFGSEYF---LSKEEMNELASGLLLSEVSFI 274 (434)
Q Consensus 198 ~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~---~~~~~~~~i~~~l~~~~~~~i 274 (434)
+ .+++++++||++..++. ...++++++.+|++..+ +++|||||||+.. .+.+.++.+++++++.+.++|
T Consensus 261 -----r-p~~p~v~~vGgi~~~~~-~~~~l~~~l~~fl~~~~-~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~vi 332 (507)
T PHA03392 261 -----R-PVPPSVQYLGGLHLHKK-PPQPLDDYLEEFLNNST-NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVL 332 (507)
T ss_pred -----C-CCCCCeeeecccccCCC-CCCCCCHHHHHHHhcCC-CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEE
Confidence 3 47889999999976432 23457899999999864 4699999999863 467889999999999999999
Q ss_pred EEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCCh
Q 046033 275 WVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQ 354 (434)
Q Consensus 275 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq 354 (434)
|+....... .. .++|+.+.+|+||.++|+|+.|++||||||+||+.||+++|||+|++|.++||
T Consensus 333 w~~~~~~~~-----~~-----------~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ 396 (507)
T PHA03392 333 WKYDGEVEA-----IN-----------LPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQ 396 (507)
T ss_pred EEECCCcCc-----cc-----------CCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccH
Confidence 997632110 01 45699999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHhhh
Q 046033 355 LFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG---DDEEINVVEKLLQLV 430 (434)
Q Consensus 355 ~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~---~~~~~~~ve~l~~~~ 430 (434)
+.||+|++++|+|+.++ ...++.++|+++|+++|+ +++||++|+++++.+++.+ .+.++.-+|.+.+..
T Consensus 397 ~~Na~rv~~~G~G~~l~----~~~~t~~~l~~ai~~vl~---~~~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 397 FYNTNKYVELGIGRALD----TVTVSAAQLVLAIVDVIE---NPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred HHHHHHHHHcCcEEEec----cCCcCHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999998 456899999999999999 7999999999999999865 566777777776543
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=6.5e-45 Score=352.02 Aligned_cols=373 Identities=20% Similarity=0.304 Sum_probs=260.6
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
+||++|+++||++|+++||+|+|++++.+.+.+++ .|+.|+.++.........+. ............+..
T Consensus 6 ~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-------~G~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 75 (392)
T TIGR01426 6 HGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-------AGAEFVLYGSALPPPDNPPE---NTEEEPIDIIEKLLD 75 (392)
T ss_pred cccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-------cCCEEEecCCcCcccccccc---ccCcchHHHHHHHHH
Confidence 69999999999999999999999999999999999 89999877432010001111 000111123333333
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCC---CCc---c
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDL---PES---E 154 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~---~ 154 (434)
....+.+.+.+++++.+||+||+|.+++++..+|+.+|||+|.+++.+..... +.++. + |...... +.. .
T Consensus 76 ~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~-~~~~~-~--~~~~~~~~~~~~~~~~~ 151 (392)
T TIGR01426 76 EAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE-FEEMV-S--PAGEGSAEEGAIAERGL 151 (392)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc-ccccc-c--ccchhhhhhhccccchh
Confidence 34444556677778889999999988889999999999999988655421111 11110 0 1100000 000 0
Q ss_pred c---cccccccccccCCch--hHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCch
Q 046033 155 I---QKMTQFKHRIVNGTE--NRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDT 229 (434)
Q Consensus 155 ~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~ 229 (434)
. ..++.+.. ..+.+ ....+. ....+..+..+.+.+++ ....|+++++++||+.....
T Consensus 152 ~~~~~~~~~~r~--~~gl~~~~~~~~~---~~~~~~~l~~~~~~l~~-----~~~~~~~~~~~~Gp~~~~~~-------- 213 (392)
T TIGR01426 152 AEYVARLSALLE--EHGITTPPVEFLA---APRRDLNLVYTPKAFQP-----AGETFDDSFTFVGPCIGDRK-------- 213 (392)
T ss_pred HHHHHHHHHHHH--HhCCCCCCHHHHh---cCCcCcEEEeCChHhCC-----CccccCCCeEEECCCCCCcc--------
Confidence 0 00111111 12211 111111 11133355555444443 44567889999999876522
Q ss_pred hhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEe
Q 046033 230 KIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQ 309 (434)
Q Consensus 230 ~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~ 309 (434)
+...|+....++++||||+||+....+..++.+++++.+.+.++++.++..... ..+.+ .+.|+.+.
T Consensus 214 ~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~-----~~~~~--------~~~~v~~~ 280 (392)
T TIGR01426 214 EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP-----ADLGE--------LPPNVEVR 280 (392)
T ss_pred ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh-----hHhcc--------CCCCeEEe
Confidence 112366666678899999999876666788889999999998888887543111 00111 34589999
Q ss_pred cccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHH
Q 046033 310 GWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFK 389 (434)
Q Consensus 310 ~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~ 389 (434)
+|+|+..+|+++++ +|||||+||+.||+++|+|+|++|...||+.||+++++.|+|..+. ...++++++.++|+
T Consensus 281 ~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~----~~~~~~~~l~~ai~ 354 (392)
T TIGR01426 281 QWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLP----PEEVTAEKLREAVL 354 (392)
T ss_pred CCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEec----cccCCHHHHHHHHH
Confidence 99999999998776 9999999999999999999999999999999999999999999987 35689999999999
Q ss_pred HHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHH
Q 046033 390 QVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLL 427 (434)
Q Consensus 390 ~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~ 427 (434)
++|+ +++|+++++++++.+++.+ ..+++++++++.
T Consensus 355 ~~l~---~~~~~~~~~~l~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 355 AVLS---DPRYAERLRKMRAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHhc---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence 9999 7899999999999999877 888888888874
No 24
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.1e-45 Score=368.58 Aligned_cols=385 Identities=22% Similarity=0.275 Sum_probs=225.1
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccH-----
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLI----- 75 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (434)
+||+.++..||++|++|||+||++++.... .+.. .....+++..++.+......... ........+
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNP----SKPSNIRFETYPDPYPEEEFEEI----FPEFISKFFSESSF 80 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T----------S-CCEEEE-----TT----------TTHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeeccc-cccc----ccccceeeEEEcCCcchHHHhhh----hHHHHHHHhhhccc
Confidence 589999999999999999999999875322 2221 11145566555333111111111 110000000
Q ss_pred -HHHHHHH-------HHh---------HHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHH--hh-
Q 046033 76 -PTLIEAF-------DAA---------KPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFS--FF- 135 (434)
Q Consensus 76 -~~~~~~~-------~~~---------~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~--~~- 135 (434)
..+.... ... .+.+.+.+++.++|++|+|.+..|+..+|+.+|+|.+.+.+....... ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~~~~~ 160 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLSSFSG 160 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCTCCTS
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccchhhhhcc
Confidence 0111111 000 123334556668999999988889999999999999876543322111 11
Q ss_pred hccCCCCC-CCCCc-------CCCCcccccc--------ccccccc----cCCchhHHHHHHhhhcCCcEEEEcCCchhc
Q 046033 136 LQNSSLKF-PFPEF-------DLPESEIQKM--------TQFKHRI----VNGTENRDRFLKAIDLSCKLVLVKTSREIE 195 (434)
Q Consensus 136 ~~~~~~~~-p~~~~-------~~~~~~~~~~--------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (434)
..|..+++ |.... ...++.+... ..+.... ...........+.+.+ ...+++|+.+.++
T Consensus 161 g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~ns~~~ld 239 (500)
T PF00201_consen 161 GVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSN-ASLVLINSHPSLD 239 (500)
T ss_dssp CCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHH-HHHCCSSTEEE--
T ss_pred CCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHH-HHHHhhhccccCc
Confidence 22333333 32211 1111111110 0000000 0000000111222233 5567778877666
Q ss_pred HHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcCCCCCceEEEEecCcccCC-HHHHHHHHHHHhhCCCcEE
Q 046033 196 SKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLS-KEEMNELASGLLLSEVSFI 274 (434)
Q Consensus 196 ~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~-~~~~~~i~~~l~~~~~~~i 274 (434)
. +++ ++|++.+||++... ...+++.++.+|++...++++|||||||+...- .+..+.+++++++.+.+||
T Consensus 240 ~-----prp-~~p~v~~vGgl~~~---~~~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~i 310 (500)
T PF00201_consen 240 F-----PRP-LLPNVVEVGGLHIK---PAKPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFI 310 (500)
T ss_dssp -------HH-HHCTSTTGCGC-S-------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEE
T ss_pred C-----Ccc-hhhcccccCccccc---cccccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccc
Confidence 4 344 34699999999654 234578999999998556789999999987533 4558889999999999999
Q ss_pred EEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCCh
Q 046033 275 WVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQ 354 (434)
Q Consensus 275 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq 354 (434)
|+..... ... .+.|+.+.+|+||.++|.|+++++||||||+||+.||+++|||+|++|+++||
T Consensus 311 W~~~~~~------~~~-----------l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ 373 (500)
T PF00201_consen 311 WKYEGEP------PEN-----------LPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQ 373 (500)
T ss_dssp EEETCSH------GCH-----------HHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTH
T ss_pred ccccccc------ccc-----------ccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccC
Confidence 9986421 111 23488999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHh
Q 046033 355 LFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG---DDEEINVVEKLLQ 428 (434)
Q Consensus 355 ~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~---~~~~~~~ve~l~~ 428 (434)
+.||+++++.|+|+.+++ ..++.+++.++|+++|+ |++|++||+++++++++.+ .+.++.-+|.+.+
T Consensus 374 ~~na~~~~~~G~g~~l~~----~~~~~~~l~~ai~~vl~---~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~~ 443 (500)
T PF00201_consen 374 PRNAARVEEKGVGVVLDK----NDLTEEELRAAIREVLE---NPSYKENAKRLSSLFRDRPISPLERAVWWIEYVAR 443 (500)
T ss_dssp HHHHHHHHHTTSEEEEGG----GC-SHHHHHHHHHHHHH---SHHHHHHHHHHHHTTT-------------------
T ss_pred CccceEEEEEeeEEEEEe----cCCcHHHHHHHHHHHHh---hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999984 66899999999999999 7999999999999999866 4445555555544
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=8.7e-42 Score=331.71 Aligned_cols=370 Identities=18% Similarity=0.185 Sum_probs=248.1
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCC-------CCCccc
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTT-------KNIPRH 73 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 73 (434)
+||++|+++||++|++|||+|+|++++.++..++. .|++|+.++.. ........... ......
T Consensus 11 ~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-------~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (401)
T cd03784 11 RGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-------AGLEFVPVGGD---PDELLASPERNAGLLLLGPGLLLG 80 (401)
T ss_pred cchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-------cCCceeeCCCC---HHHHHhhhhhcccccccchHHHHH
Confidence 59999999999999999999999999999999998 89999877322 11000000000 000012
Q ss_pred cHHHHHHHHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCc
Q 046033 74 LIPTLIEAFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPES 153 (434)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 153 (434)
....+......+.+.+.+.+++++||+||+|.+++++..+|+++|||++.+++.+........+|. ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~-----------~~~ 149 (401)
T cd03784 81 ALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPL-----------GRA 149 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCcc-----------chH
Confidence 223344444455566666777789999999988889999999999999999987754332222211 000
Q ss_pred cccccccccc--cccCCchhHHHHHHhhhc--------CCcEEEEcCCchhcHHHHHHHhhhcCCceeeeC-CCCCCCCC
Q 046033 154 EIQKMTQFKH--RIVNGTENRDRFLKAIDL--------SCKLVLVKTSREIESKDLHYLSYITKKETIPVG-PLVQEPIY 222 (434)
Q Consensus 154 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG-pl~~~~~~ 222 (434)
....+..... ...............+.- ..+..+....+ .+....+.|+++..++| ++...+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~-- 222 (401)
T cd03784 150 NLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSP-----AVLPPPPDWPRFDLVTGYGFRDVP-- 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCc-----ccCCCCCCccccCcEeCCCCCCCC--
Confidence 0000000000 000000111111111110 01122222221 12223445677777775 333222
Q ss_pred CCCCCchhhhhhhcCCCCCceEEEEecCcccCC-HHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcC
Q 046033 223 TDNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLS-KEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQG 301 (434)
Q Consensus 223 ~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~-~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~ 301 (434)
.....+.++..|++. ++++|||++||+.... ...+..++++++..+.++||+++...... ..
T Consensus 223 ~~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~----~~----------- 285 (401)
T cd03784 223 YNGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGA----ED----------- 285 (401)
T ss_pred CCCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccc----cC-----------
Confidence 122346677788876 3679999999987644 46778888999888889999876532110 01
Q ss_pred CCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccH
Q 046033 302 NNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRK 381 (434)
Q Consensus 302 ~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~ 381 (434)
.++|+.+.+|+|+..+|+++++ +|||||+||+.||+++|||+|++|...||+.||+++++.|+|+.+.. ..+++
T Consensus 286 ~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~----~~~~~ 359 (401)
T cd03784 286 LPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDP----RELTA 359 (401)
T ss_pred CCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCc----ccCCH
Confidence 4568999999999999998666 99999999999999999999999999999999999999999999973 45899
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHH
Q 046033 382 EELARVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEK 425 (434)
Q Consensus 382 ~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~ 425 (434)
++|.++|+++++ + .++++++++++.+++.+ ...+++++|+
T Consensus 360 ~~l~~al~~~l~---~-~~~~~~~~~~~~~~~~~g~~~~~~~ie~ 400 (401)
T cd03784 360 ERLAAALRRLLD---P-PSRRRAAALLRRIREEDGVPSAADVIER 400 (401)
T ss_pred HHHHHHHHHHhC---H-HHHHHHHHHHHHHHhccCHHHHHHHHhh
Confidence 999999999999 4 45667777777777655 8888888875
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-40 Score=318.67 Aligned_cols=379 Identities=20% Similarity=0.260 Sum_probs=251.5
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
.||++|+++||++|.++||+|+|+|++.+.+.+++ .|+.|..++.. +..... ..........+.. ...
T Consensus 12 ~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-------ag~~f~~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~ 79 (406)
T COG1819 12 YGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-------AGLAFVAYPIR---DSELAT-EDGKFAGVKSFRR-LLQ 79 (406)
T ss_pred cccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-------hCcceeecccc---CChhhh-hhhhhhccchhHH-Hhh
Confidence 59999999999999999999999999999999999 88778776332 111111 1111111111111 233
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCC--C---CCCCCCcCC--CCc
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSS--L---KFPFPEFDL--PES 153 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~--~---~~p~~~~~~--~~~ 153 (434)
.......++.+++.+..||+|+.|.... ...+++..++|++......+........+.. . ..+.....+ +..
T Consensus 80 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (406)
T COG1819 80 QFKKLIRELLELLRELEPDLVVDDARLS-LGLAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAGKLPIPLYPLPPRLV 158 (406)
T ss_pred hhhhhhHHHHHHHHhcchhhhhcchhhh-hhhhhhhcccchhhhhhhhccCCcccccCcccccccccccccccccChhhc
Confidence 3334456667788899999999995533 4489999999999877766554443221111 0 001110000 000
Q ss_pred cccccc-----cccccccCCchh-HHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCC
Q 046033 154 EIQKMT-----QFKHRIVNGTEN-RDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNN 227 (434)
Q Consensus 154 ~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~ 227 (434)
...... ....+...+... ..+....+.. .....+...+...+ +...++....++||+....
T Consensus 159 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~p~~~~~~~~~~~~~------- 225 (406)
T COG1819 159 RPLIFARSWLPKLVVRRNLGLELGLPNIRRLFAS-GPLLEIAYTDVLFP-----PGDRLPFIGPYIGPLLGEA------- 225 (406)
T ss_pred cccccchhhhhhhhhhhhccccccccchHHHhcC-CCCccccccccccC-----CCCCCCCCcCccccccccc-------
Confidence 000000 000000000000 0001111111 11111111111100 0012344556677765552
Q ss_pred chhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEE
Q 046033 228 DTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMV 307 (434)
Q Consensus 228 ~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~ 307 (434)
..++..| ...++++||+|+||.... .+++..+++++...+.++|+.++.. +. .... .+.|+.
T Consensus 226 ~~~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~--~~--~~~~-----------~p~n~~ 287 (406)
T COG1819 226 ANELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA--RD--TLVN-----------VPDNVI 287 (406)
T ss_pred cccCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc--cc--cccc-----------CCCceE
Confidence 2233333 334478999999998865 7889999999999999999998541 10 0111 556999
Q ss_pred EecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHH
Q 046033 308 VQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARV 387 (434)
Q Consensus 308 ~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~ 387 (434)
+.+|+||..+++++++ ||||||+||+.|||++|||+|++|...||+.||.+++++|+|+.+. ...++.+.++++
T Consensus 288 v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~----~~~l~~~~l~~a 361 (406)
T COG1819 288 VADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALP----FEELTEERLRAA 361 (406)
T ss_pred EecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecC----cccCCHHHHHHH
Confidence 9999999999998887 9999999999999999999999999999999999999999999998 466999999999
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhhhcC
Q 046033 388 FKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLLQLVKV 432 (434)
Q Consensus 388 v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~~~~~~ 432 (434)
|+++|+ ++.|+++++++++.+++.+ .+.+++++|++.+..++
T Consensus 362 v~~vL~---~~~~~~~~~~~~~~~~~~~g~~~~a~~le~~~~~~~~ 404 (406)
T COG1819 362 VNEVLA---DDSYRRAAERLAEEFKEEDGPAKAADLLEEFAREKKK 404 (406)
T ss_pred HHHHhc---CHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHhcccC
Confidence 999999 8999999999999999977 88899999997665443
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.7e-35 Score=293.02 Aligned_cols=385 Identities=25% Similarity=0.373 Sum_probs=232.4
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeE---EEEecCCCCCCCCCCCCCCCCCCCccccHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQ---LIDLQLPCTFPELHDPYNHTTKNIPRHLIPT 77 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~---f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (434)
+||++|++.+|+.|+++||+||++.+.......... ... ..+. ....++....++++.. ..............
T Consensus 16 ~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 91 (496)
T KOG1192|consen 16 QSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKS--KSIKKINPPPFEFLTIPDGLPEG-WEDDDLDISESLLE 91 (496)
T ss_pred ccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccc--eeeeeeecChHHhhhhhhhhccc-hHHHHHHHHHHHHH
Confidence 699999999999999999999999988666554431 000 0111 1111111000122222 11000000000122
Q ss_pred HHHHHHHhHHHHH-HH--HhhcCCCEEEEcCCCchHHHHHHHcC-CcEEEEecchHHHHHhhhccCCCCCCCCCcCCC--
Q 046033 78 LIEAFDAAKPAFC-NV--LETLKPTLVIYDLFQPWAAEAAYQHD-IAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLP-- 151 (434)
Q Consensus 78 ~~~~~~~~~~~~~-~~--l~~~~pDlVi~d~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-- 151 (434)
+...+........ .. ....++|++|+|.+..+...+|...+ ++...+.+..........+-.....|.......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~ 171 (496)
T KOG1192|consen 92 LNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSYVPSPFSLSSGD 171 (496)
T ss_pred HHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccccCcccCccccc
Confidence 2222222222211 11 12223999999987666776776664 888888777766554322211111121111000
Q ss_pred -----C-ccccc---cccccccccCCchhH---------------HHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcC
Q 046033 152 -----E-SEIQK---MTQFKHRIVNGTENR---------------DRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITK 207 (434)
Q Consensus 152 -----~-~~~~~---~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (434)
. ..+.. +...... ....... ........+ .+..++++.+.++. ......
T Consensus 172 ~~~~~~~~~n~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~ln~~~~~~~-----~~~~~~ 244 (496)
T KOG1192|consen 172 DMSFPERVPNLIKKDLPSFLFS-LSDDRKQDKISKELLGDILNWKPTASGIIVN-ASFIFLNSNPLLDF-----EPRPLL 244 (496)
T ss_pred cCcHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHhCCCcccccccHHHhhhc-CeEEEEccCcccCC-----CCCCCC
Confidence 0 00000 0000000 0000000 001111121 33444444332221 122246
Q ss_pred CceeeeCCCCCCCCCCCCCCchhhhhhhcCCCCC--ceEEEEecCcc---cCCHHHHHHHHHHHhhC-CCcEEEEEecCC
Q 046033 208 KETIPVGPLVQEPIYTDNNNDTKIMDWLSRKEPS--SVVYVSFGSEY---FLSKEEMNELASGLLLS-EVSFIWVVRFHS 281 (434)
Q Consensus 208 ~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~--~vV~vs~Gs~~---~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~ 281 (434)
+++++|||+..... .... .....|++..+.+ ++|||||||+. ..+.+....++.++++. +..|+|+.....
T Consensus 245 ~~v~~IG~l~~~~~-~~~~--~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~ 321 (496)
T KOG1192|consen 245 PKVIPIGPLHVKDS-KQKS--PLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDD 321 (496)
T ss_pred CCceEECcEEecCc-cccc--cccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCc
Confidence 79999999977622 1111 1334466555443 79999999998 68899999999999999 888999987542
Q ss_pred CCCccccccCchhHHHhhcCCCCcEEEecccCHHHH-hcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHH
Q 046033 282 EGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKI-LGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKM 360 (434)
Q Consensus 282 ~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~i-l~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~ 360 (434)
.. .+++++.++ ...|+...+|+||.++ +.|+++++|||||||||+.|++++|||++++|.++||+.||++
T Consensus 322 ~~------~~~~~~~~~---~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~ 392 (496)
T KOG1192|consen 322 SI------YFPEGLPNR---GRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARL 392 (496)
T ss_pred ch------hhhhcCCCC---CcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHH
Confidence 21 023332210 1457888899999998 5999999999999999999999999999999999999999999
Q ss_pred HHhhceeeeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc
Q 046033 361 VADIGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG 415 (434)
Q Consensus 361 ~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~ 415 (434)
+++.|.|....+ .+++...+..++.+++. +++|+++++++++.+++.+
T Consensus 393 i~~~g~~~v~~~----~~~~~~~~~~~~~~il~---~~~y~~~~~~l~~~~~~~p 440 (496)
T KOG1192|consen 393 LVRHGGGGVLDK----RDLVSEELLEAIKEILE---NEEYKEAAKRLSEILRDQP 440 (496)
T ss_pred HHhCCCEEEEeh----hhcCcHHHHHHHHHHHc---ChHHHHHHHHHHHHHHcCC
Confidence 999987777764 44566669999999999 8999999999999999877
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.97 E-value=5.6e-28 Score=228.25 Aligned_cols=310 Identities=17% Similarity=0.230 Sum_probs=200.6
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchh--hhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQ--SMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLI 79 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~--~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (434)
||++|.+++|++|.++||+|.|++++...+ .+.+ .|+.|+.++. .++... .....+....
T Consensus 13 GHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~-------~g~~~~~~~~----~~l~~~-------~~~~~~~~~~ 74 (352)
T PRK12446 13 GHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEK-------ENIPYYSISS----GKLRRY-------FDLKNIKDPF 74 (352)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcc-------cCCcEEEEec----cCcCCC-------chHHHHHHHH
Confidence 899999999999999999999999775543 2334 6788887732 233211 0011122222
Q ss_pred HHHHHhHHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccccc
Q 046033 80 EAFDAAKPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQK 157 (434)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 157 (434)
...... -....++++.+||+|++. +.+..+..+|+.+|+|++.+.++.....
T Consensus 75 ~~~~~~-~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~------------------------- 128 (352)
T PRK12446 75 LVMKGV-MDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGL------------------------- 128 (352)
T ss_pred HHHHHH-HHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccH-------------------------
Confidence 222222 233467899999999988 4444578999999999999887643221
Q ss_pred cccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcC-CceeeeCCCCCCCCCCCCCCchhhhhhhc
Q 046033 158 MTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITK-KETIPVGPLVQEPIYTDNNNDTKIMDWLS 236 (434)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~~~~~~~l~ 236 (434)
..++...+ ++ .+..+|++.. ..++ +++.++|+..++.... ...++..+.+.
T Consensus 129 --------------~nr~~~~~---a~-~v~~~f~~~~--------~~~~~~k~~~tG~Pvr~~~~~--~~~~~~~~~~~ 180 (352)
T PRK12446 129 --------------ANKIALRF---AS-KIFVTFEEAA--------KHLPKEKVIYTGSPVREEVLK--GNREKGLAFLG 180 (352)
T ss_pred --------------HHHHHHHh---hC-EEEEEccchh--------hhCCCCCeEEECCcCCccccc--ccchHHHHhcC
Confidence 12333322 22 3334443321 1233 4788999887663211 11223223344
Q ss_pred CCCCCceEEEEecCcccCC-HHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEeccc-CH
Q 046033 237 RKEPSSVVYVSFGSEYFLS-KEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWA-PQ 314 (434)
Q Consensus 237 ~~~~~~vV~vs~Gs~~~~~-~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~-p~ 314 (434)
-.+++++|+|..||.+... ++.+..++..+.. +..++|+++.... ...+. ...++.+.+|+ ++
T Consensus 181 l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~-----~~~~~---------~~~~~~~~~f~~~~ 245 (352)
T PRK12446 181 FSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNL-----DDSLQ---------NKEGYRQFEYVHGE 245 (352)
T ss_pred CCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchH-----HHHHh---------hcCCcEEecchhhh
Confidence 4455789999999998644 3445555554432 3677777663210 01010 11244556777 43
Q ss_pred H-HHhcccCcceEEeccCcchHHHHHHhCCcEEeccCC-----CChhhHHHHHHhhceeeeecccccCCcccHHHHHHHH
Q 046033 315 A-KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMV-----LDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVF 388 (434)
Q Consensus 315 ~-~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~-----~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v 388 (434)
. .+++++++ +|||||.+|+.|++++|+|+|++|.. .||..||+.+++.|+|..+. ..+++++.+.+++
T Consensus 246 m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~----~~~~~~~~l~~~l 319 (352)
T PRK12446 246 LPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLY----EEDVTVNSLIKHV 319 (352)
T ss_pred HHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcc----hhcCCHHHHHHHH
Confidence 3 67887776 99999999999999999999999974 48999999999999999997 4668999999999
Q ss_pred HHHhcccchHHHHHHHHH
Q 046033 389 KQVVEQEEGQQIKRKAKE 406 (434)
Q Consensus 389 ~~ll~~~~~~~~~~~a~~ 406 (434)
.+++++ .+.|++++++
T Consensus 320 ~~ll~~--~~~~~~~~~~ 335 (352)
T PRK12446 320 EELSHN--NEKYKTALKK 335 (352)
T ss_pred HHHHcC--HHHHHHHHHH
Confidence 999983 2345544433
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=3.5e-26 Score=213.28 Aligned_cols=333 Identities=20% Similarity=0.254 Sum_probs=217.0
Q ss_pred CChHHHHHHHHHHHhCCC-EEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNF-HIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh-~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
||+.|.++++++|.++|+ +|.+..+....+...... .+++|+.++.. ++... . . ...+.....
T Consensus 12 GHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~-----~~~~~~~I~~~----~~~~~-~-----~-~~~~~~~~~ 75 (357)
T COG0707 12 GHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQ-----YGIEFELIPSG----GLRRK-G-----S-LKLLKAPFK 75 (357)
T ss_pred cchhHHHHHHHHHHhhCccEEEEecccccceeeeccc-----cCceEEEEecc----ccccc-C-----c-HHHHHHHHH
Confidence 999999999999999999 688887776666544321 57888888433 33222 0 0 011111112
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccccc
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKM 158 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 158 (434)
.+. ......+++++.+||+||+. +.+..+..+|..+|||++++.++......
T Consensus 76 ~~~-~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~a------------------------- 129 (357)
T COG0707 76 LLK-GVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLA------------------------- 129 (357)
T ss_pred HHH-HHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchh-------------------------
Confidence 221 13456689999999999996 66667789999999999999877543321
Q ss_pred ccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcCC
Q 046033 159 TQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSRK 238 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~ 238 (434)
.++.... ++ .+..+|+.... ..-+.++..+|-..+... ...+....++...
T Consensus 130 --------------nk~~~~~---a~-~V~~~f~~~~~-------~~~~~~~~~tG~Pvr~~~---~~~~~~~~~~~~~- 180 (357)
T COG0707 130 --------------NKILSKF---AK-KVASAFPKLEA-------GVKPENVVVTGIPVRPEF---EELPAAEVRKDGR- 180 (357)
T ss_pred --------------HHHhHHh---hc-eeeeccccccc-------cCCCCceEEecCcccHHh---hccchhhhhhhcc-
Confidence 1222211 11 33344432111 001235788885544421 1111222222222
Q ss_pred CCCceEEEEecCcccCC-HHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCc-EEEecccCHH-
Q 046033 239 EPSSVVYVSFGSEYFLS-KEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKG-MVVQGWAPQA- 315 (434)
Q Consensus 239 ~~~~vV~vs~Gs~~~~~-~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-v~~~~~~p~~- 315 (434)
.++++|+|..||.+... ++.+..+...+.+ +..+++.++... .+...... ...+ +.+.+|+.++
T Consensus 181 ~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~----------~~~~~~~~--~~~~~~~v~~f~~dm~ 247 (357)
T COG0707 181 LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND----------LEELKSAY--NELGVVRVLPFIDDMA 247 (357)
T ss_pred CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch----------HHHHHHHH--hhcCcEEEeeHHhhHH
Confidence 25789999999998633 3444545544543 345566654321 11222222 2222 7788898886
Q ss_pred HHhcccCcceEEeccCcchHHHHHHhCCcEEeccC-C---CChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHH
Q 046033 316 KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPM-V---LDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQV 391 (434)
Q Consensus 316 ~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~-~---~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~l 391 (434)
.+++.+++ +||++|++|+.|++++|+|+|++|. . .||..||+.+++.|+|..++ ..+++++++.+.|.++
T Consensus 248 ~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~----~~~lt~~~l~~~i~~l 321 (357)
T COG0707 248 ALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIR----QSELTPEKLAELILRL 321 (357)
T ss_pred HHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEec----cccCCHHHHHHHHHHH
Confidence 66665565 9999999999999999999999995 2 38999999999999999998 4669999999999999
Q ss_pred hcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhhh
Q 046033 392 VEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLLQLV 430 (434)
Q Consensus 392 l~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~~~~ 430 (434)
++ + .++.++|++..++.+ ..++.++++.+....
T Consensus 322 ~~---~---~~~l~~m~~~a~~~~~p~aa~~i~~~~~~~~ 355 (357)
T COG0707 322 LS---N---PEKLKAMAENAKKLGKPDAAERIADLLLALA 355 (357)
T ss_pred hc---C---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 99 4 677778888888877 666666666665544
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=2.1e-25 Score=209.93 Aligned_cols=296 Identities=18% Similarity=0.245 Sum_probs=186.9
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHH--
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTL-- 78 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (434)
.||+.++++||++| +||+|+|++.....+.+.. . +.+..+ + ++.........+. .......
T Consensus 12 ~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-------~-~~~~~~--~----~~~~~~~~~~~~~-~~~~~~~~~ 74 (318)
T PF13528_consen 12 LGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-------R-FPVREI--P----GLGPIQENGRLDR-WKTVRNNIR 74 (318)
T ss_pred cCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-------c-cCEEEc--c----CceEeccCCccch-HHHHHHHHH
Confidence 59999999999999 5999999999877666654 3 445444 2 1111100011111 0111111
Q ss_pred -HHHHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccccc
Q 046033 79 -IEAFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQK 157 (434)
Q Consensus 79 -~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 157 (434)
..........+.+++++.+||+||+|.. +.+..+|+..|||++.+.+...........+ .
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~pDlVIsD~~-~~~~~aa~~~giP~i~i~~~~~~~~~~~~~~-------------~----- 135 (318)
T PF13528_consen 75 WLARLARRIRREIRWLREFRPDLVISDFY-PLAALAARRAGIPVIVISNQYWFLHPNFWLP-------------W----- 135 (318)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCEEEEcCh-HHHHHHHHhcCCCEEEEEehHHcccccCCcc-------------h-----
Confidence 1123444566778888999999999954 6678999999999999988765432100000 0
Q ss_pred cccccccccCCchhHHHHHHh--hhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhh
Q 046033 158 MTQFKHRIVNGTENRDRFLKA--IDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWL 235 (434)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l 235 (434)
. ........++... +.. +...+..++. .. .....++.++||+..+.. ...+
T Consensus 136 -~------~~~~~~~~~~~~~~~~~~-~~~~l~~~~~-~~--------~~~~~~~~~~~p~~~~~~---~~~~------- 188 (318)
T PF13528_consen 136 -D------QDFGRLIERYIDRYHFPP-ADRRLALSFY-PP--------LPPFFRVPFVGPIIRPEI---RELP------- 188 (318)
T ss_pred -h------hhHHHHHHHhhhhccCCc-ccceecCCcc-cc--------ccccccccccCchhcccc---cccC-------
Confidence 0 0000111222221 222 3434444332 00 001235667888765421 0000
Q ss_pred cCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCC-CcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEeccc--
Q 046033 236 SRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSE-VSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWA-- 312 (434)
Q Consensus 236 ~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~-- 312 (434)
..+++.|+|++|+.... .++++++..+ ..+++. +....+ . ...|+.+.+|.
T Consensus 189 --~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~~---------~--------~~~ni~~~~~~~~ 242 (318)
T PF13528_consen 189 --PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAAD---------P--------RPGNIHVRPFSTP 242 (318)
T ss_pred --CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCccc---------c--------cCCCEEEeecChH
Confidence 12356899999986532 5566676655 455555 332111 1 45688888876
Q ss_pred CHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccC--CCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHH
Q 046033 313 PQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPM--VLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQ 390 (434)
Q Consensus 313 p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~--~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ 390 (434)
....+|+.+++ +|+|||.+|++|++++|+|++++|. +.||..||+.++++|+|..+. ..+++++.|+++|++
T Consensus 243 ~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~----~~~~~~~~l~~~l~~ 316 (318)
T PF13528_consen 243 DFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLS----QEDLTPERLAEFLER 316 (318)
T ss_pred HHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcc----cccCCHHHHHHHHhc
Confidence 33477886666 9999999999999999999999998 789999999999999999997 577999999999986
Q ss_pred H
Q 046033 391 V 391 (434)
Q Consensus 391 l 391 (434)
+
T Consensus 317 ~ 317 (318)
T PF13528_consen 317 L 317 (318)
T ss_pred C
Confidence 5
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.92 E-value=1.6e-23 Score=196.67 Aligned_cols=294 Identities=17% Similarity=0.201 Sum_probs=167.8
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeE-EEEecCCCCCCCCCCCCCCCCCCCccccHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQ-LIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLI 79 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (434)
+||+.|.++||++|++ ||+|+|+++......+.. .|+. +..++ ++... .... . .+....+.
T Consensus 11 ~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~-------~~~~~~~~~p------~~~~~-~~~~-~--~~~~~~l~ 72 (321)
T TIGR00661 11 FGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK-------YGFKVFETFP------GIKLK-GEDG-K--VNIVKTLR 72 (321)
T ss_pred ccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh-------hcCcceeccC------CceEe-ecCC-c--CcHHHHHH
Confidence 5999999999999999 999999998886666666 4454 32221 11111 1000 0 11222221
Q ss_pred ---HHHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccc
Q 046033 80 ---EAFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQ 156 (434)
Q Consensus 80 ---~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 156 (434)
...........+++++++||+||+| +.+.+..+|+.+|||++.+..+.... .+ ..
T Consensus 73 ~~~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~-----~~------~~---------- 130 (321)
T TIGR00661 73 NKEYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR-----YP------LK---------- 130 (321)
T ss_pred hhccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc-----CC------cc----------
Confidence 1111234456689999999999999 66788999999999999877532110 00 00
Q ss_pred ccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCcee-eeCCCCCCCCCCCCCCchhhhhhh
Q 046033 157 KMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETI-PVGPLVQEPIYTDNNNDTKIMDWL 235 (434)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vGpl~~~~~~~~~~~~~~~~~~l 235 (434)
+ +............+...++..++..++.... ..++... .-+|+. ..+..+|.
T Consensus 131 -~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~p~~~~~~~~~~~----------~~~~~~~~ 184 (321)
T TIGR00661 131 -T-------DLIVYPTMAALRIFNERCERFIVPDYPFPYT--------ICPKIIKNMEGPLI----------RYDVDDVD 184 (321)
T ss_pred -c-------chhHHHHHHHHHHhccccceEeeecCCCCCC--------CCccccccCCCccc----------chhhhccc
Confidence 0 0000011122222222233343333321111 0111100 001111 11222222
Q ss_pred cCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCH-
Q 046033 236 SRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQ- 314 (434)
Q Consensus 236 ~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~- 314 (434)
.. .++.|+|++|+... ..+++++++.+. +.+++...... ... ...|+.+.+|.++
T Consensus 185 ~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~~~----~~~-----------~~~~v~~~~~~~~~ 240 (321)
T TIGR00661 185 NY--GEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYEVA----KNS-----------YNENVEIRRITTDN 240 (321)
T ss_pred cC--CCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCCCC----ccc-----------cCCCEEEEECChHH
Confidence 21 24578888877432 345666766552 23333221100 011 2347888889872
Q ss_pred -HHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCC--ChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHH
Q 046033 315 -AKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVL--DQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQV 391 (434)
Q Consensus 315 -~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~--dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~l 391 (434)
...|+.+ +++|||||++|++||+++|+|++++|... ||..||+.++++|+|+.+.. .++ ++.+++.++
T Consensus 241 ~~~~l~~a--d~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~----~~~---~~~~~~~~~ 311 (321)
T TIGR00661 241 FKELIKNA--ELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEY----KEL---RLLEAILDI 311 (321)
T ss_pred HHHHHHhC--CEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcCh----hhH---HHHHHHHhc
Confidence 3555654 55999999999999999999999999854 89999999999999999974 223 445555555
Q ss_pred hc
Q 046033 392 VE 393 (434)
Q Consensus 392 l~ 393 (434)
++
T Consensus 312 ~~ 313 (321)
T TIGR00661 312 RN 313 (321)
T ss_pred cc
Confidence 55
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.85 E-value=2.4e-18 Score=164.58 Aligned_cols=329 Identities=19% Similarity=0.198 Sum_probs=190.4
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCch--hhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINL--QSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLI 79 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~--~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (434)
||...++.||++|.++||+|++++.+... ..++. .|++++.++.+ ++... .. ........
T Consensus 13 G~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~-------~g~~~~~~~~~----~~~~~------~~-~~~l~~~~ 74 (357)
T PRK00726 13 GHVFPALALAEELKKRGWEVLYLGTARGMEARLVPK-------AGIEFHFIPSG----GLRRK------GS-LANLKAPF 74 (357)
T ss_pred HhhhHHHHHHHHHHhCCCEEEEEECCCchhhhcccc-------CCCcEEEEecc----CcCCC------Ch-HHHHHHHH
Confidence 89999999999999999999999986531 22222 47777777432 22111 00 11111111
Q ss_pred HHHHHhHHHHHHHHhhcCCCEEEEcC--CCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccccc
Q 046033 80 EAFDAAKPAFCNVLETLKPTLVIYDL--FQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQK 157 (434)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~pDlVi~d~--~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 157 (434)
.. -.....+.+++++.+||+|++.. ....+..+++..++|++.+......
T Consensus 75 ~~-~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~--------------------------- 126 (357)
T PRK00726 75 KL-LKGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAVP--------------------------- 126 (357)
T ss_pred HH-HHHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCCc---------------------------
Confidence 11 22234566788999999999994 2344566778889999865321100
Q ss_pred cccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcC
Q 046033 158 MTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSR 237 (434)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~ 237 (434)
....++.. .. ++.++..+ + ..+. ..-+.++.++|+........ .+. ....+..
T Consensus 127 ------------~~~~r~~~--~~-~d~ii~~~-~----~~~~---~~~~~~i~vi~n~v~~~~~~---~~~-~~~~~~~ 179 (357)
T PRK00726 127 ------------GLANKLLA--RF-AKKVATAF-P----GAFP---EFFKPKAVVTGNPVREEILA---LAA-PPARLAG 179 (357)
T ss_pred ------------cHHHHHHH--HH-hchheECc-h----hhhh---ccCCCCEEEECCCCChHhhc---ccc-hhhhccC
Confidence 01111111 11 44444333 1 1110 12346788888665432101 111 1111222
Q ss_pred CCCCceEEEEecCcccCCHHHHHHH-HHHHhhCCC--cEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCH
Q 046033 238 KEPSSVVYVSFGSEYFLSKEEMNEL-ASGLLLSEV--SFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQ 314 (434)
Q Consensus 238 ~~~~~vV~vs~Gs~~~~~~~~~~~i-~~~l~~~~~--~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~ 314 (434)
.++.++|++..|+... ..+..+ .+++.+... .+++.++.+.. +...+... ...++.+.+|+.+
T Consensus 180 ~~~~~~i~~~gg~~~~---~~~~~~l~~a~~~~~~~~~~~~~~G~g~~----------~~~~~~~~-~~~~v~~~g~~~~ 245 (357)
T PRK00726 180 REGKPTLLVVGGSQGA---RVLNEAVPEALALLPEALQVIHQTGKGDL----------EEVRAAYA-AGINAEVVPFIDD 245 (357)
T ss_pred CCCCeEEEEECCcHhH---HHHHHHHHHHHHHhhhCcEEEEEcCCCcH----------HHHHHHhh-cCCcEEEeehHhh
Confidence 2334566665555432 223232 255544332 33344433210 12222221 1113777788843
Q ss_pred -HHHhcccCcceEEeccCcchHHHHHHhCCcEEeccC----CCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHH
Q 046033 315 -AKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPM----VLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFK 389 (434)
Q Consensus 315 -~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~----~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~ 389 (434)
..+++.+++ +|+|+|.++++||+++|+|+|++|. .+||..|+..+.+.|+|..++ .++++++.+.+++.
T Consensus 246 ~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~----~~~~~~~~l~~~i~ 319 (357)
T PRK00726 246 MAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIP----QSDLTPEKLAEKLL 319 (357)
T ss_pred HHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEE----cccCCHHHHHHHHH
Confidence 477886666 9999999999999999999999996 468999999999999999997 34568999999999
Q ss_pred HHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHH
Q 046033 390 QVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKL 426 (434)
Q Consensus 390 ~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l 426 (434)
++++ ++.+++...+-+..+.+.. ..++++.+.++
T Consensus 320 ~ll~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (357)
T PRK00726 320 ELLS---DPERLEAMAEAARALGKPDAAERLADLIEEL 354 (357)
T ss_pred HHHc---CHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 9999 6666655555444443333 44555554444
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.85 E-value=1.7e-18 Score=165.36 Aligned_cols=308 Identities=20% Similarity=0.230 Sum_probs=181.2
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhh--hhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQS--MSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLI 79 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~--v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (434)
||...++.+|+.|.++||+|++++....... ... .|++++.++.+ +.... ..+..+.
T Consensus 11 G~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~----------~~~~~~~ 69 (350)
T cd03785 11 GHIFPALALAEELRERGAEVLFLGTKRGLEARLVPK-------AGIPLHTIPVG----GLRRK----------GSLKKLK 69 (350)
T ss_pred hhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccc-------cCCceEEEEec----CcCCC----------ChHHHHH
Confidence 8999999999999999999999987643211 111 46777776433 11111 1111111
Q ss_pred HHH--HHhHHHHHHHHhhcCCCEEEEcC--CCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccc
Q 046033 80 EAF--DAAKPAFCNVLETLKPTLVIYDL--FQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEI 155 (434)
Q Consensus 80 ~~~--~~~~~~~~~~l~~~~pDlVi~d~--~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 155 (434)
... -.....+.+++++.+||+|+++. .+..+..+|+..|+|++.+......
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~~------------------------- 124 (350)
T cd03785 70 APFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAVP------------------------- 124 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCCc-------------------------
Confidence 111 22234566788889999999873 3445677888899999864321100
Q ss_pred cccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhh
Q 046033 156 QKMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWL 235 (434)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l 235 (434)
....++.. .. ++.++..+-...+ + ..+.++.++|+...... ...... .+.+
T Consensus 125 --------------~~~~~~~~--~~-~~~vi~~s~~~~~-----~---~~~~~~~~i~n~v~~~~---~~~~~~-~~~~ 175 (350)
T cd03785 125 --------------GLANRLLA--RF-ADRVALSFPETAK-----Y---FPKDKAVVTGNPVREEI---LALDRE-RARL 175 (350)
T ss_pred --------------cHHHHHHH--Hh-hCEEEEcchhhhh-----c---CCCCcEEEECCCCchHH---hhhhhh-HHhc
Confidence 00111111 11 4555555421111 1 12357777886543311 001111 2333
Q ss_pred cCCCCCceEEEEecCcccCC-HHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEeccc-C
Q 046033 236 SRKEPSSVVYVSFGSEYFLS-KEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWA-P 313 (434)
Q Consensus 236 ~~~~~~~vV~vs~Gs~~~~~-~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~-p 313 (434)
...+++++|++..|+..... .+.+..++..+.+.+..+++.++.+ .. +.+.+...+...++.+.+|+ .
T Consensus 176 ~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g--~~--------~~l~~~~~~~~~~v~~~g~~~~ 245 (350)
T cd03785 176 GLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKG--DL--------EEVKKAYEELGVNYEVFPFIDD 245 (350)
T ss_pred CCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCc--cH--------HHHHHHHhccCCCeEEeehhhh
Confidence 43344556666666654321 1223333444443333444454432 11 11222111123578888888 3
Q ss_pred HHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccC----CCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHH
Q 046033 314 QAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPM----VLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFK 389 (434)
Q Consensus 314 ~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~----~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~ 389 (434)
...+++.+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|+..+.+.|+|..++. ...+++++.++|+
T Consensus 246 ~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~----~~~~~~~l~~~i~ 319 (350)
T cd03785 246 MAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQ----EELTPERLAAALL 319 (350)
T ss_pred HHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEec----CCCCHHHHHHHHH
Confidence 3467776666 9999999999999999999999985 4578999999999999999973 3368999999999
Q ss_pred HHhcccchHHHHHH
Q 046033 390 QVVEQEEGQQIKRK 403 (434)
Q Consensus 390 ~ll~~~~~~~~~~~ 403 (434)
++++ +++.+++
T Consensus 320 ~ll~---~~~~~~~ 330 (350)
T cd03785 320 ELLS---DPERLKA 330 (350)
T ss_pred HHhc---CHHHHHH
Confidence 9998 5444433
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.78 E-value=6.7e-17 Score=143.83 Aligned_cols=332 Identities=14% Similarity=0.195 Sum_probs=199.2
Q ss_pred CCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHH
Q 046033 1 HGHITPYLALAKKLSQQ--NFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTL 78 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
.||+.++..||++|.+. |.+|+++++..-..-+.- +.|++|+.+|.- --...+ .....+...+ .
T Consensus 22 lGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~------~~gVd~V~LPsl---~k~~~G-~~~~~d~~~~----l 87 (400)
T COG4671 22 LGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG------PAGVDFVKLPSL---IKGDNG-EYGLVDLDGD----L 87 (400)
T ss_pred chHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC------cccCceEecCce---EecCCC-ceeeeecCCC----H
Confidence 39999999999999988 999999998765555443 278999888311 111222 1111111112 3
Q ss_pred HHHHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccccc
Q 046033 79 IEAFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKM 158 (434)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 158 (434)
........+-+...++.++||++|+|.+-++ +-.++ .|. ..+ ...- + +.....+ ..+
T Consensus 88 ~e~~~~Rs~lil~t~~~fkPDi~IVd~~P~G---lr~EL-~pt--------L~y--l~~~---~-t~~vL~l-----r~i 144 (400)
T COG4671 88 EETKKLRSQLILSTAETFKPDIFIVDKFPFG---LRFEL-LPT--------LEY--LKTT---G-TRLVLGL-----RSI 144 (400)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeccccc---hhhhh-hHH--------HHH--Hhhc---C-Ccceeeh-----Hhh
Confidence 3444444556777888999999999966443 11111 011 000 0000 0 0000000 001
Q ss_pred ccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHH-hhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcC
Q 046033 159 TQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYL-SYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSR 237 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~ 237 (434)
..........++... ....+.+..|.+++.+.|.|..+.-.+. ......++.|+|.+..+.+ ..+.+.. ..
T Consensus 145 ~D~p~~~~~~w~~~~-~~~~I~r~yD~V~v~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~--~~~~p~~-----~~ 216 (400)
T COG4671 145 RDIPQELEADWRRAE-TVRLINRFYDLVLVYGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLP--HLPLPPH-----EA 216 (400)
T ss_pred hhchhhhccchhhhH-HHHHHHHhheEEEEecCccccChhhcCCccHhhhhheeEeEEeeccCc--CCCCCCc-----CC
Confidence 111111111222222 2222333367788888888876443332 2234468999999933211 1111111 11
Q ss_pred CCCCceEEEEecCcccCCHHHHHHHHHHHhh-CCCcEEEEEecCCCCCccccccCchhHHHhhc---CCCCcEEEecccC
Q 046033 238 KEPSSVVYVSFGSEYFLSKEEMNELASGLLL-SEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQ---GNNKGMVVQGWAP 313 (434)
Q Consensus 238 ~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~-~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~v~~~~~~p 313 (434)
+++..|+||.|.- ....+.+...+++..- .+.+-.|.+..+.. +|+....+.. .+.+++.+..|-.
T Consensus 217 -pE~~~Ilvs~GGG-~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~--------MP~~~r~~l~~~A~~~p~i~I~~f~~ 286 (400)
T COG4671 217 -PEGFDILVSVGGG-ADGAELIETALAAAQLLAGLNHKWLIVTGPF--------MPEAQRQKLLASAPKRPHISIFEFRN 286 (400)
T ss_pred -CccceEEEecCCC-hhhHHHHHHHHHHhhhCCCCCcceEEEeCCC--------CCHHHHHHHHHhcccCCCeEEEEhhh
Confidence 4456899998873 3455677766666533 34432344332221 4544333321 1347899989886
Q ss_pred HH-HHhcccCcceEEeccCcchHHHHHHhCCcEEeccCC---CChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHH
Q 046033 314 QA-KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMV---LDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFK 389 (434)
Q Consensus 314 ~~-~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~---~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~ 389 (434)
+. .++..++. +|+-||+||++|-|.+|+|.+++|.. .||..-|.|++++|+.-++. .+.++++.++++|.
T Consensus 287 ~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~----pe~lt~~~La~al~ 360 (400)
T COG4671 287 DFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLL----PENLTPQNLADALK 360 (400)
T ss_pred hHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeC----cccCChHHHHHHHH
Confidence 65 67776666 99999999999999999999999974 38999999999999999998 46799999999999
Q ss_pred HHhc
Q 046033 390 QVVE 393 (434)
Q Consensus 390 ~ll~ 393 (434)
..++
T Consensus 361 ~~l~ 364 (400)
T COG4671 361 AALA 364 (400)
T ss_pred hccc
Confidence 9998
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.77 E-value=2.3e-17 Score=158.34 Aligned_cols=337 Identities=12% Similarity=0.077 Sum_probs=189.5
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
||++|. +||++|+++|++|.|++.... .+++.+.+ .++++..+ ...|+. +.+..+...
T Consensus 17 Ghi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g~~---~~~~~~~l----~v~G~~------------~~l~~~~~~ 74 (385)
T TIGR00215 17 GDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEGCE---VLYSMEEL----SVMGLR------------EVLGRLGRL 74 (385)
T ss_pred HHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCcCc---cccChHHh----hhccHH------------HHHHHHHHH
Confidence 999999 999999999999999986533 34441100 12344333 111211 122222222
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEc-CCCchH--HHHHHHcCCcEEEEe-cchHHHHHhhhccCCCCCCCCCcCCCCccccc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYD-LFQPWA--AEAAYQHDIAAVAFV-TIAAASFSFFLQNSSLKFPFPEFDLPESEIQK 157 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~--~~~A~~~giP~v~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 157 (434)
. .......+++++.+||+||.- .-++.. +.+|+.+|||++.+. +..|.+..
T Consensus 75 ~-~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~waw~~------------------------ 129 (385)
T TIGR00215 75 L-KIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWAWRK------------------------ 129 (385)
T ss_pred H-HHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhhcCc------------------------
Confidence 2 233467788999999999864 433343 348889999999763 22221110
Q ss_pred cccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcC
Q 046033 158 MTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSR 237 (434)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~ 237 (434)
...+..... ++.++. +++. +...+ .. .+.+..++|....+..........+..+.+..
T Consensus 130 -------------~~~r~l~~~---~d~v~~-~~~~-e~~~~---~~-~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl 187 (385)
T TIGR00215 130 -------------WRAKKIEKA---TDFLLA-ILPF-EKAFY---QK-KNVPCRFVGHPLLDAIPLYKPDRKSAREKLGI 187 (385)
T ss_pred -------------chHHHHHHH---HhHhhc-cCCC-cHHHH---Hh-cCCCEEEECCchhhhccccCCCHHHHHHHcCC
Confidence 001111111 332332 2322 22221 11 23467789965543210000122333333444
Q ss_pred CCCCceEEEEecCcccCCHHHHHHHHHHHhh---C--CCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEeccc
Q 046033 238 KEPSSVVYVSFGSEYFLSKEEMNELASGLLL---S--EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWA 312 (434)
Q Consensus 238 ~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~---~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~ 312 (434)
.+++++|.+..||....-...+..+++++.. . +.++++.+...... +.+ +.+.... +....+.+..+
T Consensus 188 ~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~-----~~~-~~~~~~~-~~~~~v~~~~~- 259 (385)
T TIGR00215 188 DHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRR-----LQF-EQIKAEY-GPDLQLHLIDG- 259 (385)
T ss_pred CCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhH-----HHH-HHHHHHh-CCCCcEEEECc-
Confidence 4456788888888765223344555544433 2 23454444322111 000 1111111 01122333222
Q ss_pred CHHHHhcccCcceEEeccCcchHHHHHHhCCcEEec----cCCC---------ChhhHHHHHHhhceeeeecccccCCcc
Q 046033 313 PQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAV----PMVL---------DQLFNAKMVADIGVGLEVPRDEINQRV 379 (434)
Q Consensus 313 p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~----P~~~---------dq~~na~~~~~~G~g~~~~~~~~~~~~ 379 (434)
....+++.+++ +|+-+|..|+ |++++|+|+|++ |... .|..|++.++..++...+. .+.+
T Consensus 260 ~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~----q~~~ 332 (385)
T TIGR00215 260 DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELL----QEEC 332 (385)
T ss_pred hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhc----CCCC
Confidence 22356776555 9999999988 999999999999 7532 3888999999999999987 4669
Q ss_pred cHHHHHHHHHHHhccc----c-hHHHHHHHHHHHHHHHhcc-hHHHHHH
Q 046033 380 RKEELARVFKQVVEQE----E-GQQIKRKAKELSESIKKKG-DDEEINV 422 (434)
Q Consensus 380 ~~~~l~~~v~~ll~~~----~-~~~~~~~a~~l~~~~~~~~-~~~~~~~ 422 (434)
+++.|.+.+.++|+|. + ..++++..+++.+.+.+.+ ..++++.
T Consensus 333 ~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~ 381 (385)
T TIGR00215 333 TPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQA 381 (385)
T ss_pred CHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999999999954 2 3466777777777776555 4455553
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.76 E-value=5.7e-16 Score=147.75 Aligned_cols=312 Identities=21% Similarity=0.218 Sum_probs=169.4
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchh--hhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQ--SMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLI 79 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~--~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (434)
||+...+.||++|.++||+|++++.+.... .... .|++++.++.. +.... .. ...+....
T Consensus 12 g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~-------~g~~~~~i~~~----~~~~~------~~-~~~l~~~~ 73 (348)
T TIGR01133 12 GHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPK-------AGIEFYFIPVG----GLRRK------GS-FRLIKTPL 73 (348)
T ss_pred HHHhHHHHHHHHHHhCCCEEEEEeCCCcchhccccc-------CCCceEEEecc----CcCCC------Ch-HHHHHHHH
Confidence 899988899999999999999998754211 1122 57777766322 11100 00 11111111
Q ss_pred HHHHHhHHHHHHHHhhcCCCEEEEcCC--CchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccccc
Q 046033 80 EAFDAAKPAFCNVLETLKPTLVIYDLF--QPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQK 157 (434)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~pDlVi~d~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 157 (434)
.. ......+.+++++.+||+|++... ...+..+++.+|+|++.+.....
T Consensus 74 ~~-~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---------------------------- 124 (348)
T TIGR01133 74 KL-LKAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV---------------------------- 124 (348)
T ss_pred HH-HHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC----------------------------
Confidence 11 122345678899999999999832 23455678889999975321100
Q ss_pred cccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcC
Q 046033 158 MTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSR 237 (434)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~ 237 (434)
. ....++. .+.++.+++.+- +.. + .+ +..++|......... .+.. .+++..
T Consensus 125 ---------~--~~~~~~~---~~~~d~ii~~~~-~~~----~----~~--~~~~i~n~v~~~~~~---~~~~-~~~~~~ 175 (348)
T TIGR01133 125 ---------P--GLTNKLL---SRFAKKVLISFP-GAK----D----HF--EAVLVGNPVRQEIRS---LPVP-RERFGL 175 (348)
T ss_pred ---------c--cHHHHHH---HHHhCeeEECch-hHh----h----cC--CceEEcCCcCHHHhc---ccch-hhhcCC
Confidence 0 0111111 111555655442 111 1 11 235566443221100 0000 112322
Q ss_pred CCCCceEEEEecCcccCC-HHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcE-EEeccc--C
Q 046033 238 KEPSSVVYVSFGSEYFLS-KEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGM-VVQGWA--P 313 (434)
Q Consensus 238 ~~~~~vV~vs~Gs~~~~~-~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v-~~~~~~--p 313 (434)
.+++++|.+..|+..... .+.+...+..+.+.+..+++.++. +.. +.+.... ...++ .+..|. .
T Consensus 176 ~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~~~~~~~~~~g~--~~~--------~~l~~~~--~~~~l~~~v~~~~~~ 243 (348)
T TIGR01133 176 REGKPTILVLGGSQGAKILNELVPKALAKLAEKGIQIVHQTGK--NDL--------EKVKNVY--QELGIEAIVTFIDEN 243 (348)
T ss_pred CCCCeEEEEECCchhHHHHHHHHHHHHHHHhhcCcEEEEECCc--chH--------HHHHHHH--hhCCceEEecCcccC
Confidence 233445555445544211 111222333333334455443321 110 1121111 11111 122233 3
Q ss_pred HHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCC---CChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHH
Q 046033 314 QAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMV---LDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQ 390 (434)
Q Consensus 314 ~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~---~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ 390 (434)
...+++.+++ +|+++|.+++.||+++|+|+|++|.. .+|..|+..++..|.|..++ ..+.+++++.+++++
T Consensus 244 ~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~----~~~~~~~~l~~~i~~ 317 (348)
T TIGR01133 244 MAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIR----QKELLPEKLLEALLK 317 (348)
T ss_pred HHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEe----cccCCHHHHHHHHHH
Confidence 4577787666 99999988999999999999999863 46888999999999999886 344679999999999
Q ss_pred HhcccchHHHHHHHHHHHHHHHh
Q 046033 391 VVEQEEGQQIKRKAKELSESIKK 413 (434)
Q Consensus 391 ll~~~~~~~~~~~a~~l~~~~~~ 413 (434)
+++ ++++++ +|++..++
T Consensus 318 ll~---~~~~~~---~~~~~~~~ 334 (348)
T TIGR01133 318 LLL---DPANLE---AMAEAARK 334 (348)
T ss_pred HHc---CHHHHH---HHHHHHHh
Confidence 998 554443 44444444
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.74 E-value=7.1e-16 Score=141.22 Aligned_cols=250 Identities=19% Similarity=0.243 Sum_probs=149.4
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchh---hhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQ---SMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPT 77 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~---~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (434)
.||++++++||++|+++||+|+|++.+.... .+.+ .|++++.++.+ . . +
T Consensus 14 ~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~-------~g~~v~~~~~~--------~--~-----------~ 65 (279)
T TIGR03590 14 LGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLS-------AGFPVYELPDE--------S--S-----------R 65 (279)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH-------cCCeEEEecCC--------C--c-----------h
Confidence 4999999999999999999999999875543 4455 78888776211 0 0 0
Q ss_pred HHHHHHHhHHHHHHHHhhcCCCEEEEcCCCchHH--HHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccc
Q 046033 78 LIEAFDAAKPAFCNVLETLKPTLVIYDLFQPWAA--EAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEI 155 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 155 (434)
..-..++.++++..+||+||+|.+.+... ...+..+.+++++.-......
T Consensus 66 -----~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~----------------------- 117 (279)
T TIGR03590 66 -----YDDALELINLLEEEKFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPH----------------------- 117 (279)
T ss_pred -----hhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCc-----------------------
Confidence 11223466788888999999996654432 223334555554431110000
Q ss_pred cccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcC-CceeeeCC---CCCCCCCCCCCCchhh
Q 046033 156 QKMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITK-KETIPVGP---LVQEPIYTDNNNDTKI 231 (434)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vGp---l~~~~~~~~~~~~~~~ 231 (434)
. +|.++..+. ..+. ..+.. ..+ ....+.|+ +.++ +.
T Consensus 118 -------------------------~-~D~vin~~~-~~~~--~~y~~-~~~~~~~~l~G~~Y~~lr~----------eF 157 (279)
T TIGR03590 118 -------------------------D-CDLLLDQNL-GADA--SDYQG-LVPANCRLLLGPSYALLRE----------EF 157 (279)
T ss_pred -------------------------C-CCEEEeCCC-CcCH--hHhcc-cCcCCCeEEecchHHhhhH----------HH
Confidence 1 444443322 2111 11110 011 23456676 3332 11
Q ss_pred hhhh---cCCCCCceEEEEecCcccCCHHHHHHHHHHHhhC--CCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcE
Q 046033 232 MDWL---SRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLS--EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGM 306 (434)
Q Consensus 232 ~~~l---~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v 306 (434)
.+.- ...++.+.|+|++|+.... .....+++++.+. +..+.++++..... .+.+.+.. +...|+
T Consensus 158 ~~~~~~~~~~~~~~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~~~~--------~~~l~~~~-~~~~~i 226 (279)
T TIGR03590 158 YQLATANKRRKPLRRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSSNPN--------LDELKKFA-KEYPNI 226 (279)
T ss_pred HHhhHhhhcccccCeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCCCcC--------HHHHHHHH-HhCCCE
Confidence 1100 0111235889999965432 2344556666553 34566665543111 11222211 134578
Q ss_pred EEecccCHH-HHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHH
Q 046033 307 VVQGWAPQA-KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKM 360 (434)
Q Consensus 307 ~~~~~~p~~-~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~ 360 (434)
.+..++++. .+|+.+++ +|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 227 ~~~~~~~~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 227 ILFIDVENMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred EEEeCHHHHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 888999886 88887776 999999 9999999999999999999999999975
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.72 E-value=1.7e-15 Score=146.14 Aligned_cols=146 Identities=17% Similarity=0.220 Sum_probs=98.9
Q ss_pred hcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhC-CCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccC
Q 046033 235 LSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLS-EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAP 313 (434)
Q Consensus 235 l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p 313 (434)
+...+++++|++..|+.+.. ..+..+++++.+. +.+++++.+.+. . +-+.+.+...+...++.+.+|++
T Consensus 196 ~~l~~~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~----~----~~~~l~~~~~~~~~~v~~~g~~~ 265 (380)
T PRK13609 196 YQLCPNKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE----A----LKQSLEDLQETNPDALKVFGYVE 265 (380)
T ss_pred cCCCCCCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH----H----HHHHHHHHHhcCCCcEEEEechh
Confidence 33334466888877876532 2345566666543 445555543210 0 00111111111235788889998
Q ss_pred HH-HHhcccCcceEEeccCcchHHHHHHhCCcEEec-cCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHH
Q 046033 314 QA-KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAV-PMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQV 391 (434)
Q Consensus 314 ~~-~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~-P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~l 391 (434)
+. .++..+++ +|+.+|..|+.||+++|+|+|+. |..+.+..|+..+++.|+|+... +++++.++|.++
T Consensus 266 ~~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~--------~~~~l~~~i~~l 335 (380)
T PRK13609 266 NIDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIR--------DDEEVFAKTEAL 335 (380)
T ss_pred hHHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEEC--------CHHHHHHHHHHH
Confidence 75 77887776 99999988999999999999985 67777889999999999998764 689999999999
Q ss_pred hcccchHHHHHH
Q 046033 392 VEQEEGQQIKRK 403 (434)
Q Consensus 392 l~~~~~~~~~~~ 403 (434)
++ +++.+++
T Consensus 336 l~---~~~~~~~ 344 (380)
T PRK13609 336 LQ---DDMKLLQ 344 (380)
T ss_pred HC---CHHHHHH
Confidence 99 5544433
No 39
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.66 E-value=4.8e-14 Score=135.91 Aligned_cols=271 Identities=15% Similarity=0.133 Sum_probs=154.6
Q ss_pred hHHHHHHHHhhcCCCEEEEcCCCc---hHHHHHHH-----cCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccc
Q 046033 85 AKPAFCNVLETLKPTLVIYDLFQP---WAAEAAYQ-----HDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQ 156 (434)
Q Consensus 85 ~~~~~~~~l~~~~pDlVi~d~~~~---~~~~~A~~-----~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 156 (434)
+...+.+++++.+||+|++++..+ .+..++.. .++|++++.+..... +
T Consensus 88 ~~~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~-----~------------------- 143 (382)
T PLN02605 88 VAREVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTC-----H------------------- 143 (382)
T ss_pred HHHHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCc-----C-------------------
Confidence 346788899999999999974221 22233332 379998776432100 0
Q ss_pred ccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhh-hcC-CceeeeCCCCCCCCCCCCCCchhhhhh
Q 046033 157 KMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSY-ITK-KETIPVGPLVQEPIYTDNNNDTKIMDW 234 (434)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~vGpl~~~~~~~~~~~~~~~~~~ 234 (434)
..++.+.++.+++.+. ...+.... ..+ +++..+|..............+++.+-
T Consensus 144 -------------------~~w~~~~~d~~~~~s~-----~~~~~l~~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~ 199 (382)
T PLN02605 144 -------------------PTWFHKGVTRCFCPSE-----EVAKRALKRGLEPSQIRVYGLPIRPSFARAVRPKDELRRE 199 (382)
T ss_pred -------------------cccccCCCCEEEECCH-----HHHHHHHHcCCCHHHEEEECcccCHhhccCCCCHHHHHHH
Confidence 0001112666776552 22111211 122 457777754432110111123344444
Q ss_pred hcCCCCCceEEEEecCcccCCH-HHHHHHHHHHh-----hCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEE
Q 046033 235 LSRKEPSSVVYVSFGSEYFLSK-EEMNELASGLL-----LSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVV 308 (434)
Q Consensus 235 l~~~~~~~vV~vs~Gs~~~~~~-~~~~~i~~~l~-----~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~ 308 (434)
+...+++++|++..|+.+.... ..+..+...+. ..+..++++++.+. ... +.+.+.. ...++.+
T Consensus 200 ~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~----~~~----~~L~~~~--~~~~v~~ 269 (382)
T PLN02605 200 LGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK----KLQ----SKLESRD--WKIPVKV 269 (382)
T ss_pred cCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH----HHH----HHHHhhc--ccCCeEE
Confidence 5554556788877777665332 22333322221 12334555554221 111 1111110 2346778
Q ss_pred ecccCHH-HHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCCh-hhHHHHHHhhceeeeecccccCCcccHHHHHH
Q 046033 309 QGWAPQA-KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQ-LFNAKMVADIGVGLEVPRDEINQRVRKEELAR 386 (434)
Q Consensus 309 ~~~~p~~-~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq-~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~ 386 (434)
.+|+++. .++..+++ +|+.+|.+|+.||+++|+|+|+.+....| ..|+..+.+.|+|+.+. +++++.+
T Consensus 270 ~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~--------~~~~la~ 339 (382)
T PLN02605 270 RGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFSE--------SPKEIAR 339 (382)
T ss_pred EeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeecC--------CHHHHHH
Confidence 8888865 66776666 99999999999999999999999765555 47999999999998663 7999999
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHh
Q 046033 387 VFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLLQ 428 (434)
Q Consensus 387 ~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~~ 428 (434)
+|.+++++ +++ ..++|++..++.. ..++.++++.+.+
T Consensus 340 ~i~~ll~~--~~~---~~~~m~~~~~~~~~~~a~~~i~~~l~~ 377 (382)
T PLN02605 340 IVAEWFGD--KSD---ELEAMSENALKLARPEAVFDIVHDLHE 377 (382)
T ss_pred HHHHHHcC--CHH---HHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 99999983 133 3444555555544 4444555555544
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.62 E-value=6.8e-14 Score=135.08 Aligned_cols=339 Identities=14% Similarity=0.110 Sum_probs=168.4
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
||++|.+ ++++|+++++++.+++.... .+++.+ .+.+++++.++. .++ ...+..+. .
T Consensus 13 G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~l~~----~g~------------~~~~~~~~-~ 69 (380)
T PRK00025 13 GDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAG---CESLFDMEELAV----MGL------------VEVLPRLP-R 69 (380)
T ss_pred HHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCC---CccccCHHHhhh----ccH------------HHHHHHHH-H
Confidence 8999999 99999999888888875432 233311 112233322210 010 01111111 1
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEcCC-CchH--HHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccccc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYDLF-QPWA--AEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKM 158 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d~~-~~~~--~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 158 (434)
.......+.+++++++||+|++..+ .++. +.+|+..|||++.+.....+.+
T Consensus 70 ~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~~~~-------------------------- 123 (380)
T PRK00025 70 LLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSVWAW-------------------------- 123 (380)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCchhhc--------------------------
Confidence 2223456778999999999986422 2333 4447778999987643211000
Q ss_pred ccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcCC
Q 046033 159 TQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSRK 238 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~ 238 (434)
. .....++ ... ++.+++.+-. +... ... .+-++.++|....+.. .......+..+.+...
T Consensus 124 -------~--~~~~~~~---~~~-~d~i~~~~~~--~~~~---~~~-~g~~~~~~G~p~~~~~-~~~~~~~~~~~~l~~~ 183 (380)
T PRK00025 124 -------R--QGRAFKI---AKA-TDHVLALFPF--EAAF---YDK-LGVPVTFVGHPLADAI-PLLPDRAAARARLGLD 183 (380)
T ss_pred -------C--chHHHHH---HHH-HhhheeCCcc--CHHH---HHh-cCCCeEEECcCHHHhc-ccccChHHHHHHcCCC
Confidence 0 0111111 111 4445544421 1111 222 2234778885443311 0001123333334433
Q ss_pred CCCceEEEEecCcccCCHHHHHHHHHHHhh---C--CCcEEEEEecCCCCCccccccCchhHHHhhcCC-CCcEEEeccc
Q 046033 239 EPSSVVYVSFGSEYFLSKEEMNELASGLLL---S--EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGN-NKGMVVQGWA 312 (434)
Q Consensus 239 ~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~---~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~v~~~~~~ 312 (434)
+++++|++..||........+..++++++. . +..++++.+.+... +.+.+...+. ..++.+.. -
T Consensus 184 ~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~---------~~~~~~~~~~~~~~v~~~~-~ 253 (380)
T PRK00025 184 PDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRR---------EQIEEALAEYAGLEVTLLD-G 253 (380)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhH---------HHHHHHHhhcCCCCeEEEc-c
Confidence 345677777776543212223444444432 2 33455553311100 1111111111 12333322 1
Q ss_pred CHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChh-hHH------------HHHHhhceeeeecccccCCcc
Q 046033 313 PQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQL-FNA------------KMVADIGVGLEVPRDEINQRV 379 (434)
Q Consensus 313 p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~-~na------------~~~~~~G~g~~~~~~~~~~~~ 379 (434)
.-..+++.+++ +|+.+|.+++ ||+++|+|+|++|...--+ ..+ +.++..+++..+. ....
T Consensus 254 ~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~ 326 (380)
T PRK00025 254 QKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELL----QEEA 326 (380)
T ss_pred cHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhc----CCCC
Confidence 22366666565 9999998887 9999999999996432111 222 2333333344443 3457
Q ss_pred cHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHH
Q 046033 380 RKEELARVFKQVVEQEE-GQQIKRKAKELSESIKKKG-DDEEINVVEKLL 427 (434)
Q Consensus 380 ~~~~l~~~v~~ll~~~~-~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~ 427 (434)
+++++.+++.++++|++ ..+++++++.+.+.+ ..+ ...+++++.++.
T Consensus 327 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 327 TPEKLARALLPLLADGARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 89999999999999422 123444554455555 334 555666665543
No 41
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.59 E-value=8.9e-13 Score=126.73 Aligned_cols=353 Identities=14% Similarity=0.069 Sum_probs=178.9
Q ss_pred hHHHHHHHHHHHh--CCCEEE---EEeCCCchh--hhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHH
Q 046033 4 ITPYLALAKKLSQ--QNFHIY---FCSTPINLQ--SMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIP 76 (434)
Q Consensus 4 ~~p~l~lA~~L~~--~Gh~V~---~~~~~~~~~--~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (434)
=.-.++||++|++ .|++|. |+++....+ .++. .| .+..+|. .|+... .. ...+.
T Consensus 10 d~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~-------~g-~~~~~~s----gg~~~~------~~-~~~~~ 70 (396)
T TIGR03492 10 DLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI-------IG-PTKELPS----GGFSYQ------SL-RGLLR 70 (396)
T ss_pred HHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce-------eC-CCCCCCC----CCccCC------CH-HHHHH
Confidence 3456889999998 699999 998875443 1222 33 3433311 122111 11 11222
Q ss_pred HHHH-HHHHhHHHHHHHHhhc--CCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCc
Q 046033 77 TLIE-AFDAAKPAFCNVLETL--KPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPES 153 (434)
Q Consensus 77 ~~~~-~~~~~~~~~~~~l~~~--~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 153 (434)
.+.. ..... -.-..+++++ +||+||+.-- +.++.+|+..|+|++++.+.-.-.+....+ +.+....
T Consensus 71 ~~~~gl~~~~-~~~~~~~~~~~~~p~~v~~~Gg-~v~~~aA~~~~~p~~~~~~~esn~~~~~~~----~~~~~~~----- 139 (396)
T TIGR03492 71 DLRAGLVGLT-LGQWRALRKWAKKGDLIVAVGD-IVPLLFAWLSGKPYAFVGTAKSDYYWESGP----RRSPSDE----- 139 (396)
T ss_pred HHHhhHHHHH-HHHHHHHHHHhhcCCEEEEECc-HHHHHHHHHcCCCceEEEeeccceeecCCC----CCccchh-----
Confidence 2222 22222 2233577778 9999998732 348899999999999843221110000000 0000000
Q ss_pred cccccccccccccCCchh-HHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhh
Q 046033 154 EIQKMTQFKHRIVNGTEN-RDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIM 232 (434)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~ 232 (434)
+.++.. ....+. ..++...+ ++.+++.+ + ..... +.+ .+.++.++|....+.-.. ....
T Consensus 140 ----~~~~~G--~~~~p~e~n~l~~~~---a~~v~~~~-~-~t~~~---l~~-~g~k~~~vGnPv~d~l~~---~~~~-- 199 (396)
T TIGR03492 140 ----YHRLEG--SLYLPWERWLMRSRR---CLAVFVRD-R-LTARD---LRR-QGVRASYLGNPMMDGLEP---PERK-- 199 (396)
T ss_pred ----hhccCC--CccCHHHHHHhhchh---hCEEeCCC-H-HHHHH---HHH-CCCeEEEeCcCHHhcCcc---cccc--
Confidence 111110 000111 11222211 44444443 2 22222 222 335899999765542100 0111
Q ss_pred hhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhC----CCcEEEEEecCCCCCccccccCch-hHHH---------h
Q 046033 233 DWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLS----EVSFIWVVRFHSEGNFTIEEALPQ-GFAE---------E 298 (434)
Q Consensus 233 ~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~----~~~~i~~~~~~~~~~~~~~~~~p~-~~~~---------~ 298 (434)
.-.+++++|.+-.||-...-...+..++++++.. +..|++.+...... ......+.+ ++.. .
T Consensus 200 ---~l~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~-~~~~~~l~~~g~~~~~~~~~~~~~ 275 (396)
T TIGR03492 200 ---PLLTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLSL-EKLQAILEDLGWQLEGSSEDQTSL 275 (396)
T ss_pred ---ccCCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCCH-HHHHHHHHhcCceecCCccccchh
Confidence 1122356888888887542222334455554432 45566665322110 000000000 0000 0
Q ss_pred hcCCCCcEEEecccCH-HHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhh----ceeeeeccc
Q 046033 299 IQGNNKGMVVQGWAPQ-AKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADI----GVGLEVPRD 373 (434)
Q Consensus 299 ~~~~~~~v~~~~~~p~-~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~----G~g~~~~~~ 373 (434)
. ...++.+..+..+ ..+++.+++ +|+-+|..| .|+++.|+|+|++|....|. |+...++. |.++.+..
T Consensus 276 ~--~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~- 348 (396)
T TIGR03492 276 F--QKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS- 348 (396)
T ss_pred h--ccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC-
Confidence 0 0123445455434 367776666 999999777 99999999999999766776 99877774 77777752
Q ss_pred ccCCcccHHHHHHHHHHHhcccchHHHHHHHH-HHHHHHHhcc-hHHHHHHHHH
Q 046033 374 EINQRVRKEELARVFKQVVEQEEGQQIKRKAK-ELSESIKKKG-DDEEINVVEK 425 (434)
Q Consensus 374 ~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~-~l~~~~~~~~-~~~~~~~ve~ 425 (434)
.+.+.+.+++.++++ +++.+++.. ..++.+.+.+ ...+++++.+
T Consensus 349 -----~~~~~l~~~l~~ll~---d~~~~~~~~~~~~~~lg~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 349 -----KNPEQAAQVVRQLLA---DPELLERCRRNGQERMGPPGASARIAESILK 394 (396)
T ss_pred -----CCHHHHHHHHHHHHc---CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 356999999999999 555554443 3444443333 4455555443
No 42
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.58 E-value=4.2e-13 Score=129.61 Aligned_cols=239 Identities=14% Similarity=0.186 Sum_probs=139.9
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCchHHHH--HHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccccccccccc
Q 046033 86 KPAFCNVLETLKPTLVIYDLFQPWAAEA--AYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKMTQFKH 163 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d~~~~~~~~~--A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 163 (434)
...+.+++++.+||+||++.-.+....+ +..+++|++++.+.... +. .
T Consensus 93 ~~~l~~~l~~~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td~~~------~~---------------------~--- 142 (391)
T PRK13608 93 LNKLINLLIKEKPDLILLTFPTPVMSVLTEQFNINIPVATVMTDYRL------HK---------------------N--- 142 (391)
T ss_pred HHHHHHHHHHhCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCCCCc------cc---------------------c---
Confidence 3678889999999999998432222212 23458999876544210 00 0
Q ss_pred cccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcC-CceeeeCCCCCCCCCCCCCCchhhhhhhcCCCCCc
Q 046033 164 RIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITK-KETIPVGPLVQEPIYTDNNNDTKIMDWLSRKEPSS 242 (434)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (434)
++.+.++.+++.+ ++....+. ....+ .++..+|....+..... ....+..+-+.-.++++
T Consensus 143 --------------w~~~~~d~~~v~s-~~~~~~l~---~~gi~~~ki~v~GiPv~~~f~~~-~~~~~~~~~~~l~~~~~ 203 (391)
T PRK13608 143 --------------WITPYSTRYYVAT-KETKQDFI---DVGIDPSTVKVTGIPIDNKFETP-IDQKQWLIDNNLDPDKQ 203 (391)
T ss_pred --------------cccCCCCEEEECC-HHHHHHHH---HcCCCHHHEEEECeecChHhccc-ccHHHHHHHcCCCCCCC
Confidence 0011255566654 22221111 11122 35555664332211000 01222222233334567
Q ss_pred eEEEEecCcccCCHHHHHHHHHHHhh--CCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHH-HHhc
Q 046033 243 VVYVSFGSEYFLSKEEMNELASGLLL--SEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQA-KILG 319 (434)
Q Consensus 243 vV~vs~Gs~~~~~~~~~~~i~~~l~~--~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~-~il~ 319 (434)
+|+++.|+.+.. ..+..+++++.+ .+..++++.+.+ .++. +.+.+.. +...++.+.+|..+. .++.
T Consensus 204 ~ilv~~G~lg~~--k~~~~li~~~~~~~~~~~~vvv~G~~----~~l~----~~l~~~~-~~~~~v~~~G~~~~~~~~~~ 272 (391)
T PRK13608 204 TILMSAGAFGVS--KGFDTMITDILAKSANAQVVMICGKS----KELK----RSLTAKF-KSNENVLILGYTKHMNEWMA 272 (391)
T ss_pred EEEEECCCcccc--hhHHHHHHHHHhcCCCceEEEEcCCC----HHHH----HHHHHHh-ccCCCeEEEeccchHHHHHH
Confidence 888888887631 334445555322 234555554321 0011 1121111 123578888898765 6777
Q ss_pred ccCcceEEeccCcchHHHHHHhCCcEEec-cCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 320 HGSIGGFISHCGWGSTVEGIMYGVPIIAV-PMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 320 ~~~~~~~I~hgG~~s~~eal~~GvP~v~~-P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
.+++ +|+.+|..|+.||+++|+|+|++ |..++|..|+..+++.|+|+... +.+++.++|.+++++
T Consensus 273 ~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~--------~~~~l~~~i~~ll~~ 338 (391)
T PRK13608 273 SSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD--------TPEEAIKIVASLTNG 338 (391)
T ss_pred hhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC--------CHHHHHHHHHHHhcC
Confidence 7676 99998888999999999999998 77777889999999999998774 789999999999983
No 43
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.54 E-value=8.6e-16 Score=130.15 Aligned_cols=136 Identities=23% Similarity=0.296 Sum_probs=92.6
Q ss_pred eEEEEecCcccCC-HHHHHHHHHHHhhC--CCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccC-HHHHh
Q 046033 243 VVYVSFGSEYFLS-KEEMNELASGLLLS--EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAP-QAKIL 318 (434)
Q Consensus 243 vV~vs~Gs~~~~~-~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p-~~~il 318 (434)
+|+|+.||.+... ...+..++..+... ..+++++++.... ...... +. +...++.+.+|.+ ...++
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~-----~~~~~~-~~----~~~~~v~~~~~~~~m~~~m 70 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY-----EELKIK-VE----NFNPNVKVFGFVDNMAELM 70 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC-----HHHCCC-HC----CTTCCCEEECSSSSHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH-----HHHHHH-Hh----ccCCcEEEEechhhHHHHH
Confidence 5899999876421 12222233333222 3567777654311 111111 10 0225788999999 56888
Q ss_pred cccCcceEEeccCcchHHHHHHhCCcEEeccCCC----ChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 319 GHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVL----DQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 319 ~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~----dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
..+++ +|||||.||++|++++|+|+|++|... +|..||..+++.|+|..+. ....+.+.|.++|.+++.+
T Consensus 71 ~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~----~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 71 AAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLD----ESELNPEELAEAIEELLSD 144 (167)
T ss_dssp HHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSE----CCC-SCCCHHHHHHCHCCC
T ss_pred HHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccC----cccCCHHHHHHHHHHHHcC
Confidence 88777 999999999999999999999999988 9999999999999999998 4557799999999999993
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.51 E-value=1.1e-10 Score=111.49 Aligned_cols=314 Identities=14% Similarity=0.122 Sum_probs=162.9
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|+...+..++++|.++||+|++++.......-... ....+...+.+ ... . ... ...
T Consensus 15 G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~------~~~~~~~~~~~----~~~-~-----~~~---~~~----- 70 (364)
T cd03814 15 GVVRTLQRLVEHLRARGHEVLVIAPGPFRESEGPA------RVVPVPSVPLP----GYP-E-----IRL---ALP----- 70 (364)
T ss_pred ceehHHHHHHHHHHHCCCEEEEEeCCchhhccCCC------CceeecccccC----ccc-c-----eEe---ccc-----
Confidence 77889999999999999999999987543221110 11111111111 000 0 000 000
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEcCC---CchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccccc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYDLF---QPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKM 158 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d~~---~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 158 (434)
....+.+.++..+||+|++... ...+..+++..++|++................
T Consensus 71 ---~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------------------- 127 (364)
T cd03814 71 ---PRRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGL-------------------- 127 (364)
T ss_pred ---chhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhccc--------------------
Confidence 1123445667889999987622 23456777889999988665433211100000
Q ss_pred ccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcCC
Q 046033 159 TQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSRK 238 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~ 238 (434)
.........+...+...++.++..+....+ ........++..+.+-................+.+.
T Consensus 128 -------~~~~~~~~~~~~~~~~~~d~i~~~s~~~~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-- 193 (364)
T cd03814 128 -------GPLSWLAWAYLRWFHNRADRVLVPSPSLAD-----ELRARGFRRVRLWPRGVDTELFHPRRRDEALRARLG-- 193 (364)
T ss_pred -------chHhHhhHHHHHHHHHhCCEEEeCCHHHHH-----HHhccCCCceeecCCCccccccCcccccHHHHHHhC--
Confidence 000011112222222337777777743322 222222234444433222110000001111111122
Q ss_pred CCCceEEEEecCccc-CCHHHHHHHHHHHhhC-CCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHHH
Q 046033 239 EPSSVVYVSFGSEYF-LSKEEMNELASGLLLS-EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAK 316 (434)
Q Consensus 239 ~~~~vV~vs~Gs~~~-~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~ 316 (434)
..++.+++..|+... ...+.+.+++..+... +..+++.. .+ ... +.+. +...++.+.+++++..
T Consensus 194 ~~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~G-~~-~~~--------~~~~----~~~~~v~~~g~~~~~~ 259 (364)
T cd03814 194 PPDRPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIVG-DG-PAR--------ARLE----ARYPNVHFLGFLDGEE 259 (364)
T ss_pred CCCCeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEEe-CC-chH--------HHHh----ccCCcEEEEeccCHHH
Confidence 223466777787653 2234444444444332 33444332 21 110 0111 1456888889988764
Q ss_pred ---HhcccCcceEEeccC----cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHH
Q 046033 317 ---ILGHGSIGGFISHCG----WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFK 389 (434)
Q Consensus 317 ---il~~~~~~~~I~hgG----~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~ 389 (434)
++..+++ +|+.+. .++++||+++|+|+|+.+..+ +...++..+.|..... .+.+++.+++.
T Consensus 260 ~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~~~~~------~~~~~l~~~i~ 327 (364)
T cd03814 260 LAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGLLVEP------GDAEAFAAALA 327 (364)
T ss_pred HHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceEEcCC------CCHHHHHHHHH
Confidence 5665555 886654 478999999999999887554 4455666688887753 36788999999
Q ss_pred HHhcccchHHHHHHHH
Q 046033 390 QVVEQEEGQQIKRKAK 405 (434)
Q Consensus 390 ~ll~~~~~~~~~~~a~ 405 (434)
+++. +++.+++..
T Consensus 328 ~l~~---~~~~~~~~~ 340 (364)
T cd03814 328 ALLA---DPELRRRMA 340 (364)
T ss_pred HHHc---CHHHHHHHH
Confidence 9999 444443333
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.42 E-value=8e-10 Score=109.52 Aligned_cols=320 Identities=12% Similarity=0.075 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHH
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDA 84 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
+.+..+++.|.++||+|++++....... .. .|+..+..... .++.. . .....+ .
T Consensus 78 ~~~~~l~~~L~~~G~eV~vlt~~~~~~~-~~-------~g~~v~~~~~~----~~~~~-~----~~~~~~---------~ 131 (465)
T PLN02871 78 NRFQNFIRYLREMGDEVLVVTTDEGVPQ-EF-------HGAKVIGSWSF----PCPFY-Q----KVPLSL---------A 131 (465)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCCc-cc-------cCceeeccCCc----CCccC-C----Cceeec---------c
Confidence 5778999999999999999997643211 01 34444322100 01100 0 000000 0
Q ss_pred hHHHHHHHHhhcCCCEEEEcCC---CchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccccccccc
Q 046033 85 AKPAFCNVLETLKPTLVIYDLF---QPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKMTQF 161 (434)
Q Consensus 85 ~~~~~~~~l~~~~pDlVi~d~~---~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 161 (434)
....+.+++++.+||+|.+... .+.+..+|+..|+|+|........... + . .. +..+
T Consensus 132 ~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~----~---~----------~~---~~~~ 191 (465)
T PLN02871 132 LSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYI----P---R----------YT---FSWL 191 (465)
T ss_pred CCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhh----h---c----------cc---chhh
Confidence 0113556788889999976632 123455678899999975443211110 0 0 00 0000
Q ss_pred cccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhc---CCceeeeCCCCCCCCCCCCCCchhhhhhhcCC
Q 046033 162 KHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYIT---KKETIPVGPLVQEPIYTDNNNDTKIMDWLSRK 238 (434)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~ 238 (434)
. .....+...+.+.++.+++.+.. ..+.+.... ..++..+..-.....-.......+..+.+...
T Consensus 192 ~-------~~~~~~~r~~~~~ad~ii~~S~~-----~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~ 259 (465)
T PLN02871 192 V-------KPMWDIIRFLHRAADLTLVTSPA-----LGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGG 259 (465)
T ss_pred H-------HHHHHHHHHHHhhCCEEEECCHH-----HHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCC
Confidence 0 00111112222237777777632 222232221 23444332211110000000112222222211
Q ss_pred CCCceEEEEecCcccCCHHHHHHHHHHHhhC-CCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHH--
Q 046033 239 EPSSVVYVSFGSEYFLSKEEMNELASGLLLS-EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQA-- 315 (434)
Q Consensus 239 ~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~-- 315 (434)
.+...+++..|+... .+.+..++++++.. +.+++++ +.+. . .+.+.+.. ...++.+.++++..
T Consensus 260 ~~~~~~i~~vGrl~~--~K~~~~li~a~~~~~~~~l~iv-G~G~-~--------~~~l~~~~--~~~~V~f~G~v~~~ev 325 (465)
T PLN02871 260 EPEKPLIVYVGRLGA--EKNLDFLKRVMERLPGARLAFV-GDGP-Y--------REELEKMF--AGTPTVFTGMLQGDEL 325 (465)
T ss_pred CCCCeEEEEeCCCch--hhhHHHHHHHHHhCCCcEEEEE-eCCh-H--------HHHHHHHh--ccCCeEEeccCCHHHH
Confidence 222355666687643 34456667777654 3444443 3211 1 12222222 33578888999765
Q ss_pred -HHhcccCcceEEeccC----cchHHHHHHhCCcEEeccCCCChhhHHHHHHh---hceeeeecccccCCcccHHHHHHH
Q 046033 316 -KILGHGSIGGFISHCG----WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVAD---IGVGLEVPRDEINQRVRKEELARV 387 (434)
Q Consensus 316 -~il~~~~~~~~I~hgG----~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~---~G~g~~~~~~~~~~~~~~~~l~~~ 387 (434)
.++..+++ +|.-.. ..++.||+++|+|+|+....+ ....++. -+.|..++. -+++++.++
T Consensus 326 ~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~------~d~~~la~~ 393 (465)
T PLN02871 326 SQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTP------GDVDDCVEK 393 (465)
T ss_pred HHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCC------CCHHHHHHH
Confidence 45565665 885433 347889999999999875432 2334444 577888763 268999999
Q ss_pred HHHHhcccc-hHHHHHHHHHHH
Q 046033 388 FKQVVEQEE-GQQIKRKAKELS 408 (434)
Q Consensus 388 v~~ll~~~~-~~~~~~~a~~l~ 408 (434)
|.+++++++ -.++.+++++..
T Consensus 394 i~~ll~~~~~~~~~~~~a~~~~ 415 (465)
T PLN02871 394 LETLLADPELRERMGAAAREEV 415 (465)
T ss_pred HHHHHhCHHHHHHHHHHHHHHH
Confidence 999998422 134455555443
No 46
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.31 E-value=1.6e-08 Score=98.13 Aligned_cols=330 Identities=17% Similarity=0.121 Sum_probs=160.5
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|+-..+..++++|+++||+|++++.......... .....++.++.++.. ...... . ......+
T Consensus 22 G~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~~~~-----~---~~~~~~~--- 84 (398)
T cd03800 22 GQNVYVLELARALARLGHEVDIFTRRIDDALPPI---VELAPGVRVVRVPAG---PAEYLP-----K---EELWPYL--- 84 (398)
T ss_pred ceeehHHHHHHHHhccCceEEEEEecCCcccCCc---cccccceEEEecccc---cccCCC-----h---hhcchhH---
Confidence 4556789999999999999999986543322110 011257777666322 100000 0 0011111
Q ss_pred HHHhHHHHHHHHhhc--CCCEEEEcC--CCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccccc
Q 046033 82 FDAAKPAFCNVLETL--KPTLVIYDL--FQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQK 157 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~--~pDlVi~d~--~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 157 (434)
......+...++.. +||+|++.. ....+..+++.+|+|++............ .. .
T Consensus 85 -~~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~--~~-----------~------- 143 (398)
T cd03800 85 -DEFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHTFHSLGAVKRR--HL-----------G------- 143 (398)
T ss_pred -HHHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEEeecccccCCc--cc-----------c-------
Confidence 11223344555665 999999873 33445677888999988654322100000 00 0
Q ss_pred cccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhc---CCceeeeCCCCCCCCCCCCCCchhhhhh
Q 046033 158 MTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYIT---KKETIPVGPLVQEPIYTDNNNDTKIMDW 234 (434)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~vGpl~~~~~~~~~~~~~~~~~~ 234 (434)
...... . ..........+.. ++.++..+....+ ...... ..++..+.+-.....-..........+.
T Consensus 144 ~~~~~~--~--~~~~~~~~~~~~~-ad~ii~~s~~~~~-----~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~ 213 (398)
T cd03800 144 AADTYE--P--ARRIEAEERLLRA-ADRVIASTPQEAE-----ELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRAR 213 (398)
T ss_pred cccccc--h--hhhhhHHHHHHhh-CCEEEEcCHHHHH-----HHHHHccccccccEEECCCCCccceecccchhhHHHh
Confidence 000000 0 0000011112333 7777777643221 122221 1224444333221100000001110111
Q ss_pred hcCCCCCceEEEEecCcccC-CHHHHHHHHHHHhhC--CCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecc
Q 046033 235 LSRKEPSSVVYVSFGSEYFL-SKEEMNELASGLLLS--EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGW 311 (434)
Q Consensus 235 l~~~~~~~vV~vs~Gs~~~~-~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~ 311 (434)
+.... .+.+++..|+.... ..+.+...+..+.+. +.+++++.+............+ +.+.++ .+...++.+.++
T Consensus 214 ~~~~~-~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~-~~~~~~-~~~~~~v~~~g~ 290 (398)
T cd03800 214 LLRDP-DKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEEL-RELARE-LGVIDRVDFPGR 290 (398)
T ss_pred hccCC-CCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHH-HHHHHh-cCCCceEEEecc
Confidence 22222 33667777876532 233333333333322 3444444332211100000000 001111 113468889999
Q ss_pred cCHHH---HhcccCcceEEec----cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHH
Q 046033 312 APQAK---ILGHGSIGGFISH----CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEEL 384 (434)
Q Consensus 312 ~p~~~---il~~~~~~~~I~h----gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l 384 (434)
+|+.. ++..+++ +++. |-..++.||+++|+|+|+....+ ....++..+.|..++. -+.+++
T Consensus 291 ~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~~~~~------~~~~~l 358 (398)
T cd03800 291 VSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDGVTGLLVDP------RDPEAL 358 (398)
T ss_pred CCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeEEeCC------CCHHHH
Confidence 98864 4666555 7744 22368999999999999876433 5556666678888753 368999
Q ss_pred HHHHHHHhcc
Q 046033 385 ARVFKQVVEQ 394 (434)
Q Consensus 385 ~~~v~~ll~~ 394 (434)
.++|.+++++
T Consensus 359 ~~~i~~l~~~ 368 (398)
T cd03800 359 AAALRRLLTD 368 (398)
T ss_pred HHHHHHHHhC
Confidence 9999999984
No 47
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.30 E-value=4.4e-09 Score=103.14 Aligned_cols=69 Identities=19% Similarity=0.289 Sum_probs=54.5
Q ss_pred HHhcccCcceEEec-----cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHH
Q 046033 316 KILGHGSIGGFISH-----CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQ 390 (434)
Q Consensus 316 ~il~~~~~~~~I~h-----gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ 390 (434)
.+++.+++ ++.. ||..++.||+++|+|+|..|...++......+.+.|+++... +++++.++|.+
T Consensus 315 ~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~--------d~~~La~~l~~ 384 (425)
T PRK05749 315 LLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE--------DAEDLAKAVTY 384 (425)
T ss_pred HHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEEC--------CHHHHHHHHHH
Confidence 55666665 4432 344579999999999999999888888888877778777654 78999999999
Q ss_pred Hhcc
Q 046033 391 VVEQ 394 (434)
Q Consensus 391 ll~~ 394 (434)
++++
T Consensus 385 ll~~ 388 (425)
T PRK05749 385 LLTD 388 (425)
T ss_pred HhcC
Confidence 9993
No 48
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.29 E-value=4.6e-09 Score=97.44 Aligned_cols=289 Identities=15% Similarity=0.189 Sum_probs=158.5
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCCch--hhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 3 HITPYLALAKKLSQQNFHIYFCSTPINL--QSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 3 H~~p~l~lA~~L~~~Gh~V~~~~~~~~~--~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|+.-+-.+.++|.++||+|.+.+.+... +.+.. .|+++..+... + .. ....+..
T Consensus 12 hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~-------yg~~y~~iG~~----g---------~~----~~~Kl~~ 67 (335)
T PF04007_consen 12 HVHFFKNIIRELEKRGHEVLITARDKDETEELLDL-------YGIDYIVIGKH----G---------DS----LYGKLLE 67 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH-------cCCCeEEEcCC----C---------CC----HHHHHHH
Confidence 7888899999999999999999876432 33444 78999888321 1 11 1122222
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHHH-hhhccCCCCCCCCCcCCCCccccccc
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASFS-FFLQNSSLKFPFPEFDLPESEIQKMT 159 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~ 159 (434)
.... .-.+.+++++++||++|+- .+..+..+|..+|+|+|.+.-+...... ....| ... ....+
T Consensus 68 ~~~R-~~~l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~P------la~-------~i~~P 132 (335)
T PF04007_consen 68 SIER-QYKLLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLP------LAD-------VIITP 132 (335)
T ss_pred HHHH-HHHHHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceeehh------cCC-------eeECC
Confidence 2222 3355678888999999986 5577888999999999998765432221 00001 000 00000
Q ss_pred cccccccCCchhHHHHHHhhhcCCcEEE-EcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcCC
Q 046033 160 QFKHRIVNGTENRDRFLKAIDLSCKLVL-VKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSRK 238 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~ 238 (434)
.... ......+.. ...+. ++++.|+. ++-| ..+++++.+-+...
T Consensus 133 ~~~~---------~~~~~~~G~-~~~i~~y~G~~E~a----------------yl~~---------F~Pd~~vl~~lg~~ 177 (335)
T PF04007_consen 133 EAIP---------KEFLKRFGA-KNQIRTYNGYKELA----------------YLHP---------FKPDPEVLKELGLD 177 (335)
T ss_pred cccC---------HHHHHhcCC-cCCEEEECCeeeEE----------------eecC---------CCCChhHHHHcCCC
Confidence 0000 000000000 00011 22222111 1111 22455555555532
Q ss_pred CCCceEEEEecCccc----CCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEE-ecccC
Q 046033 239 EPSSVVYVSFGSEYF----LSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVV-QGWAP 313 (434)
Q Consensus 239 ~~~~vV~vs~Gs~~~----~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~-~~~~p 313 (434)
+.+.|+|=+.+..+ .....+..+++.+++.+..++....... .++ ..+ .- ++.+ ..-+.
T Consensus 178 -~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~---------~~~-~~~----~~-~~~i~~~~vd 241 (335)
T PF04007_consen 178 -DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED---------QRE-LFE----KY-GVIIPPEPVD 241 (335)
T ss_pred -CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc---------hhh-HHh----cc-CccccCCCCC
Confidence 45677777665332 2335677888999888766433322111 111 111 11 2322 23445
Q ss_pred HHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhc
Q 046033 314 QAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 314 ~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
..+++.++++ +|+-|| ....||...|+|.|-+ ..++-...-+.+.+.|.-.+. -+++++.+.|.+.+.
T Consensus 242 ~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll~~~--------~~~~ei~~~v~~~~~ 309 (335)
T PF04007_consen 242 GLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLLYHS--------TDPDEIVEYVRKNLG 309 (335)
T ss_pred HHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCeEec--------CCHHHHHHHHHHhhh
Confidence 5588998887 998766 7789999999999986 223322333446666764444 377887776655544
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.28 E-value=1.5e-08 Score=96.36 Aligned_cols=300 Identities=15% Similarity=0.099 Sum_probs=151.4
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|+-.-...++++|.++||+|++++............ .+...... . . .... ...............
T Consensus 16 G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~-----~~~~~~~~--~---~-~~~~----~~~~~~~~~~~~~~~ 80 (359)
T cd03823 16 GAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKEV-----IGVVVYGR--P---I-DEVL----RSALPRDLFHLSDYD 80 (359)
T ss_pred chHHHHHHHHHHHHhcCCceEEEeCCCCCCCccccc-----ccceeecc--c---c-cccc----CCCchhhhhHHHhcc
Confidence 555667889999999999999999865443322200 11111111 0 0 0000 000000111111111
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEcCCCch---HHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccccc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYDLFQPW---AAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKM 158 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d~~~~~---~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 158 (434)
.......+.++++..+||+|++...... ....+...++|++............
T Consensus 81 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~------------------------ 136 (359)
T cd03823 81 NPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPR------------------------ 136 (359)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecch------------------------
Confidence 2233566778888899999988853322 2345677899998765432210000
Q ss_pred ccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcC--CceeeeCCCCCCCCCCCCCCchhhhhhhc
Q 046033 159 TQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITK--KETIPVGPLVQEPIYTDNNNDTKIMDWLS 236 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~vGpl~~~~~~~~~~~~~~~~~~l~ 236 (434)
... .... .+.++..+. ...+....... .++..+........ ......
T Consensus 137 ~~~----------------~~~~-~d~ii~~s~-----~~~~~~~~~~~~~~~~~vi~n~~~~~~---~~~~~~------ 185 (359)
T cd03823 137 QGL----------------FKKG-GDAVIAPSR-----FLLDRYVANGLFAEKISVIRNGIDLDR---AKRPRR------ 185 (359)
T ss_pred hhh----------------hccC-CCEEEEeCH-----HHHHHHHHcCCCccceEEecCCcChhh---cccccc------
Confidence 000 0000 244554442 12222222211 24443432221110 000000
Q ss_pred CCCCCceEEEEecCcccC-CHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHH
Q 046033 237 RKEPSSVVYVSFGSEYFL-SKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQA 315 (434)
Q Consensus 237 ~~~~~~vV~vs~Gs~~~~-~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~ 315 (434)
..+..+.+++..|+.... ..+.+..++..+.+.+.++++.-... ... ...... ....++.+.+++++.
T Consensus 186 ~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~l~i~G~~~-~~~---------~~~~~~-~~~~~v~~~g~~~~~ 254 (359)
T cd03823 186 APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPRGDIELVIVGNGL-ELE---------EESYEL-EGDPRVEFLGAYPQE 254 (359)
T ss_pred CCCCCceEEEEEecCccccCHHHHHHHHHHHHhcCcEEEEEcCch-hhh---------HHHHhh-cCCCeEEEeCCCCHH
Confidence 122344777777876532 23334444444433344554442211 110 000000 134688888999765
Q ss_pred ---HHhcccCcceEEec----cCc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHH
Q 046033 316 ---KILGHGSIGGFISH----CGW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARV 387 (434)
Q Consensus 316 ---~il~~~~~~~~I~h----gG~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~ 387 (434)
.++..+++ +|+. .|+ .++.||+++|+|+|+.+.. .+...++..+.|..+.. -+.+++.++
T Consensus 255 ~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~~~g~~~~~------~d~~~l~~~ 322 (359)
T cd03823 255 EIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDGVNGLLFPP------GDAEDLAAA 322 (359)
T ss_pred HHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCCCcEEEECC------CCHHHHHHH
Confidence 44666665 7732 333 5799999999999987543 35555666567877763 258999999
Q ss_pred HHHHhcc
Q 046033 388 FKQVVEQ 394 (434)
Q Consensus 388 v~~ll~~ 394 (434)
+.+++++
T Consensus 323 i~~l~~~ 329 (359)
T cd03823 323 LERLIDD 329 (359)
T ss_pred HHHHHhC
Confidence 9999993
No 50
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.27 E-value=1.2e-08 Score=98.00 Aligned_cols=326 Identities=16% Similarity=0.100 Sum_probs=159.3
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhh--cccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNL--QEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLI 79 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~--~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (434)
|+-..+..++++|.++||+|++++............ ......++++..++.. . .. . ......+.
T Consensus 15 G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~----~----~~~~~~~~ 80 (394)
T cd03794 15 GGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLP---P---YK----K----NGLLKRLL 80 (394)
T ss_pred CcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecC---C---CC----c----cchHHHHH
Confidence 677789999999999999999998764444322100 0011156777665322 1 00 0 01111111
Q ss_pred HHHHHhHHHHHHHH-hhcCCCEEEEcC-CC---chHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcc
Q 046033 80 EAFDAAKPAFCNVL-ETLKPTLVIYDL-FQ---PWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESE 154 (434)
Q Consensus 80 ~~~~~~~~~~~~~l-~~~~pDlVi~d~-~~---~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 154 (434)
............+. +..+||+|++.. .. ..+...+...++|++.................
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~--------------- 145 (394)
T cd03794 81 NYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALGLL--------------- 145 (394)
T ss_pred hhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCc---------------
Confidence 11111122222222 477899999884 21 22334555669999987654321111000000
Q ss_pred ccccccccccccCCc-hhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHh--hhcCCceeeeCCCCCCCCCCCCCCchhh
Q 046033 155 IQKMTQFKHRIVNGT-ENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLS--YITKKETIPVGPLVQEPIYTDNNNDTKI 231 (434)
Q Consensus 155 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vGpl~~~~~~~~~~~~~~~ 231 (434)
. ..... .....+.......++.++..+.. ..+... .....++..+..................
T Consensus 146 --------~-~~~~~~~~~~~~~~~~~~~~d~vi~~s~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 211 (394)
T cd03794 146 --------K-NGSLLYRLLRKLERLIYRRADAIVVISPG-----MREYLVRRGVPPEKISVIPNGVDLELFKPPPADESL 211 (394)
T ss_pred --------c-ccchHHHHHHHHHHHHHhcCCEEEEECHH-----HHHHHHhcCCCcCceEEcCCCCCHHHcCCccchhhh
Confidence 0 00000 11222222222237777776632 222232 1112355555433221100000000001
Q ss_pred hhhhcCCCCCceEEEEecCccc-CCHHHHHHHHHHHhhC-CCcEEEEEecCCCCCccccccCchhHHHh-hcCCCCcEEE
Q 046033 232 MDWLSRKEPSSVVYVSFGSEYF-LSKEEMNELASGLLLS-EVSFIWVVRFHSEGNFTIEEALPQGFAEE-IQGNNKGMVV 308 (434)
Q Consensus 232 ~~~l~~~~~~~vV~vs~Gs~~~-~~~~~~~~i~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~-~~~~~~~v~~ 308 (434)
.+.. ...++.+++..|+... ...+.+...+..+... +.++++. +.+... +.+.+. .....+++.+
T Consensus 212 ~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~~~~---------~~~~~~~~~~~~~~v~~ 279 (394)
T cd03794 212 RKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDGPEK---------EELKELAKALGLDNVTF 279 (394)
T ss_pred hhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCcccH---------HHHHHHHHHcCCCcEEE
Confidence 1111 1224577777887654 2234444444444433 3444333 221110 111110 0014568888
Q ss_pred ecccCHH---HHhcccCcceEEeccC---------cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccC
Q 046033 309 QGWAPQA---KILGHGSIGGFISHCG---------WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEIN 376 (434)
Q Consensus 309 ~~~~p~~---~il~~~~~~~~I~hgG---------~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~ 376 (434)
.+++++. .++..+++ +|.... .+++.||+++|+|+|+.+..+.+... ...+.|..+..
T Consensus 280 ~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~----~~~~~g~~~~~---- 349 (394)
T cd03794 280 LGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV----EEAGAGLVVPP---- 349 (394)
T ss_pred eCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh----ccCCcceEeCC----
Confidence 8888866 45565665 764322 23479999999999999876654332 22266766652
Q ss_pred CcccHHHHHHHHHHHhcc
Q 046033 377 QRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~ 394 (434)
-+.+++.++|.+++++
T Consensus 350 --~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 350 --GDPEALAAAILELLDD 365 (394)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 2789999999999973
No 51
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.27 E-value=2.9e-12 Score=105.05 Aligned_cols=113 Identities=18% Similarity=0.199 Sum_probs=74.0
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
.||++|+++||++|++|||+|++++++.+.+.+++ .|++|++++.+ .+++.. ......+..
T Consensus 9 ~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~-------~Gl~~~~~~~~---~~~~~~---------~~~~~~~~~ 69 (139)
T PF03033_consen 9 RGHVYPFLALARALRRRGHEVRLATPPDFRERVEA-------AGLEFVPIPGD---SRLPRS---------LEPLANLRR 69 (139)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH-------TT-EEEESSSC---GGGGHH---------HHHHHHHHC
T ss_pred hhHHHHHHHHHHHHhccCCeEEEeecccceecccc-------cCceEEEecCC---cCcCcc---------cchhhhhhh
Confidence 38999999999999999999999999999999988 99999888311 011110 001111111
Q ss_pred HHHH--hHHHHHHHHhh------------cCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHHHH
Q 046033 81 AFDA--AKPAFCNVLET------------LKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAASF 132 (434)
Q Consensus 81 ~~~~--~~~~~~~~l~~------------~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~ 132 (434)
.... ......+.++. ..+|+++++.....+..+|+++|||++.....+....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~~ 135 (139)
T PF03033_consen 70 LARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFAT 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGST
T ss_pred HHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCcC
Confidence 1111 11112222221 1468888888778899999999999999888776544
No 52
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.27 E-value=3.2e-08 Score=96.64 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=61.9
Q ss_pred CcEEEecccCHH---HHhcccCcceEEeccC------cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccc
Q 046033 304 KGMVVQGWAPQA---KILGHGSIGGFISHCG------WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDE 374 (434)
Q Consensus 304 ~~v~~~~~~p~~---~il~~~~~~~~I~hgG------~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~ 374 (434)
.++.+.+++++. .++..+++-++.+..+ .+.+.|++++|+|+|+....+.. ....++ +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~~~~~-- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGVCVEP-- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcEEeCC--
Confidence 478888998876 4566677633333322 13478999999999998654321 122333 67877753
Q ss_pred cCCcccHHHHHHHHHHHhcccc-hHHHHHHHHHHHH
Q 046033 375 INQRVRKEELARVFKQVVEQEE-GQQIKRKAKELSE 409 (434)
Q Consensus 375 ~~~~~~~~~l~~~v~~ll~~~~-~~~~~~~a~~l~~ 409 (434)
-+.++++++|.+++++++ ...+++++++..+
T Consensus 358 ----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~ 389 (412)
T PRK10307 358 ----ESVEALVAAIAALARQALLRPKLGTVAREYAE 389 (412)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 368999999999998422 2345555555443
No 53
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.24 E-value=5e-08 Score=95.16 Aligned_cols=91 Identities=24% Similarity=0.334 Sum_probs=61.4
Q ss_pred CcEEEe-cccCHH---HHhcccCcceEEe-c---cC---cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecc
Q 046033 304 KGMVVQ-GWAPQA---KILGHGSIGGFIS-H---CG---WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPR 372 (434)
Q Consensus 304 ~~v~~~-~~~p~~---~il~~~~~~~~I~-h---gG---~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~ 372 (434)
.++.+. .|++.. .++..+++ +|. + -| ..++.||+++|+|+|+.... .....++..+.|..+.
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~~~~~G~lv~- 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVKHGENGLVFG- 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhcCCCCEEEEC-
Confidence 456544 578765 44666666 663 1 12 45799999999999986432 4556677777888773
Q ss_pred cccCCcccHHHHHHHHHHHhcc---cc-hHHHHHHHHHHH
Q 046033 373 DEINQRVRKEELARVFKQVVEQ---EE-GQQIKRKAKELS 408 (434)
Q Consensus 373 ~~~~~~~~~~~l~~~v~~ll~~---~~-~~~~~~~a~~l~ 408 (434)
+.++++++|.+++++ ++ ..++++++++.+
T Consensus 367 -------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 -------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred -------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 689999999999995 22 344555555554
No 54
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=2.3e-09 Score=93.37 Aligned_cols=279 Identities=14% Similarity=0.187 Sum_probs=165.4
Q ss_pred CCChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 1 HGHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
+||+.+++.||++|.++|..++|++.+...+.+-+.. .++.+.-. ..
T Consensus 15 mGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~-----~~f~~~~~-------------~~--------------- 61 (318)
T COG3980 15 MGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVY-----EGFKVLEG-------------RG--------------- 61 (318)
T ss_pred cchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhh-----hhccceee-------------ec---------------
Confidence 5999999999999999999999999976555333310 11221100 00
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEcCCCchH---HHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccccc
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYDLFQPWA---AEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQK 157 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~---~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 157 (434)
.+.+++.++|++|.|.+...+ ..+..++|.+.+.+......+.....--
T Consensus 62 ---------~n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~~~d~d~i------------------- 113 (318)
T COG3980 62 ---------NNLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKSFKDNDLI------------------- 113 (318)
T ss_pred ---------ccccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccchhhhHhh-------------------
Confidence 016788899999999776544 4566678999998765443222100000
Q ss_pred cccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCce-eeeCCCCCCCCCCCCCCchhhhh---
Q 046033 158 MTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKET-IPVGPLVQEPIYTDNNNDTKIMD--- 233 (434)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vGpl~~~~~~~~~~~~~~~~~--- 233 (434)
++...+ ..+... ..+.+. ++.||=... .+++..+
T Consensus 114 vN~~~~--------a~~~y~---------------------------~v~~k~~~~lGp~y~~-------lr~eF~~~r~ 151 (318)
T COG3980 114 VNAILN--------ANDYYG---------------------------LVPNKTRYYLGPGYAP-------LRPEFYALRE 151 (318)
T ss_pred hhhhhc--------chhhcc---------------------------ccCcceEEEecCCcee-------ccHHHHHhHH
Confidence 000000 000000 011122 334432211 1122111
Q ss_pred hhcCCCCCceEEEEecCcccCCH-HHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEeccc
Q 046033 234 WLSRKEPSSVVYVSFGSEYFLSK-EEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWA 312 (434)
Q Consensus 234 ~l~~~~~~~vV~vs~Gs~~~~~~-~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~ 312 (434)
-.-+. ++.-|+|++|.. ++ ...-.++..+.+..+.+-++++.. + .-++....+.. ..+++.+....
T Consensus 152 ~~~~r-~~r~ilI~lGGs---Dpk~lt~kvl~~L~~~~~nl~iV~gs~--~------p~l~~l~k~~~-~~~~i~~~~~~ 218 (318)
T COG3980 152 ENTER-PKRDILITLGGS---DPKNLTLKVLAELEQKNVNLHIVVGSS--N------PTLKNLRKRAE-KYPNINLYIDT 218 (318)
T ss_pred HHhhc-chheEEEEccCC---ChhhhHHHHHHHhhccCeeEEEEecCC--C------cchhHHHHHHh-hCCCeeeEecc
Confidence 11111 244799999864 33 356667777877765555555421 1 11122222221 34556554444
Q ss_pred CHH-HHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHH
Q 046033 313 PQA-KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQV 391 (434)
Q Consensus 313 p~~-~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~l 391 (434)
.++ .+|..+++ .|+.|| .|++|++..|+|.+++|...-|-..|...+.+|+-..+.. . +++..+...+.++
T Consensus 219 ~dma~LMke~d~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~----~-l~~~~~~~~~~~i 290 (318)
T COG3980 219 NDMAELMKEADL--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGY----H-LKDLAKDYEILQI 290 (318)
T ss_pred hhHHHHHHhcch--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccC----C-CchHHHHHHHHHh
Confidence 444 67786666 998876 5899999999999999999999999999999999877752 2 6777777777888
Q ss_pred hcccchHHHHHHHHH
Q 046033 392 VEQEEGQQIKRKAKE 406 (434)
Q Consensus 392 l~~~~~~~~~~~a~~ 406 (434)
.. +...|++.-.
T Consensus 291 ~~---d~~~rk~l~~ 302 (318)
T COG3980 291 QK---DYARRKNLSF 302 (318)
T ss_pred hh---CHHHhhhhhh
Confidence 87 5665555443
No 55
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.23 E-value=3.7e-10 Score=108.37 Aligned_cols=160 Identities=16% Similarity=0.219 Sum_probs=94.0
Q ss_pred CCceEEEEecCcccC-CHHHHHHHHHHHhhCCC-cEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHH--
Q 046033 240 PSSVVYVSFGSEYFL-SKEEMNELASGLLLSEV-SFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQA-- 315 (434)
Q Consensus 240 ~~~vV~vs~Gs~~~~-~~~~~~~i~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~-- 315 (434)
++++|++++|..... ..+.+..++++++.... +++++...+...... +-+ ...+......++.+.++.+..
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~----l~~-~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPR----IRE-AGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHH----HHH-HHHhhccCCCCEEEECCcCHHHH
Confidence 356888888876543 35667778888766432 244444322111111 111 111110014577777666554
Q ss_pred -HHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 316 -KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 316 -~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
.++..+++ +|+.+| |.+.||++.|+|+|.++...+ +..+.+.|++..+. -+.+++.++|.++++
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~g~~~~~~-------~~~~~i~~~i~~ll~- 336 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVESGTNVLVG-------TDPEAILAAIEKLLS- 336 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhheeeEEecC-------CCHHHHHHHHHHHhc-
Confidence 44554555 999998 778899999999999874322 33455567776663 158999999999999
Q ss_pred cchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHH
Q 046033 395 EEGQQIKRKAKELSESIKKKG-DDEEINVVEKL 426 (434)
Q Consensus 395 ~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l 426 (434)
++..+++ |+ ....+ ..+..++++.|
T Consensus 337 --~~~~~~~---~~--~~~~~~~~a~~~I~~~l 362 (363)
T cd03786 337 --DEFAYSL---MS--INPYGDGNASERIVEIL 362 (363)
T ss_pred --Cchhhhc---CC--CCCCCCCHHHHHHHHHh
Confidence 4433332 33 33345 55566666543
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.20 E-value=1e-07 Score=90.92 Aligned_cols=313 Identities=14% Similarity=0.066 Sum_probs=158.5
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|+-..+..+++.|.+.||+|++++............ ........ ..... ..... . .......
T Consensus 15 g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~-~~~~~-~-~~~~~~~--- 76 (377)
T cd03798 15 GGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLL-----KGRLVGVE-------RLPVL-LPVVP-L-LKGPLLY--- 76 (377)
T ss_pred hHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhc-----cccccccc-------ccccC-cchhh-c-cccchhH---
Confidence 556678899999999999999999875544333210 00000000 00000 00000 0 0111111
Q ss_pred HHHhHHHHHHHHh--hcCCCEEEEcCCCc---hHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccc
Q 046033 82 FDAAKPAFCNVLE--TLKPTLVIYDLFQP---WAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQ 156 (434)
Q Consensus 82 ~~~~~~~~~~~l~--~~~pDlVi~d~~~~---~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 156 (434)
......+...++ ..+||+|++..... .....++..|+|++............
T Consensus 77 -~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~---------------------- 133 (377)
T cd03798 77 -LLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLP---------------------- 133 (377)
T ss_pred -HHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccC----------------------
Confidence 122344556776 88999999883322 33456667788998766543321100
Q ss_pred ccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhh--cCCceeeeCCCCCCCCCCCCCCchhhhhh
Q 046033 157 KMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYI--TKKETIPVGPLVQEPIYTDNNNDTKIMDW 234 (434)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~vGpl~~~~~~~~~~~~~~~~~~ 234 (434)
............+.. ++.++..+. ...+..... ...++..++.......-.. ...... +.
T Consensus 134 ----------~~~~~~~~~~~~~~~-~d~ii~~s~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~-~~ 195 (377)
T cd03798 134 ----------RKRLLRALLRRALRR-ADAVIAVSE-----ALADELKALGIDPEKVTVIPNGVDTERFSP-ADRAEA-RK 195 (377)
T ss_pred ----------chhhHHHHHHHHHhc-CCeEEeCCH-----HHHHHHHHhcCCCCceEEcCCCcCcccCCC-cchHHH-Hh
Confidence 000011112222333 777777763 222233332 2345665654432211000 001100 11
Q ss_pred hcCCCCCceEEEEecCcccC-CHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhh--cCCCCcEEEecc
Q 046033 235 LSRKEPSSVVYVSFGSEYFL-SKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEI--QGNNKGMVVQGW 311 (434)
Q Consensus 235 l~~~~~~~vV~vs~Gs~~~~-~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~v~~~~~ 311 (434)
+.. ..++.+++..|+.... ..+.+...+..+.+.+..+.+.+.+..... +.+.+.. .+...++.+.++
T Consensus 196 ~~~-~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~~~--------~~~~~~~~~~~~~~~v~~~g~ 266 (377)
T cd03798 196 LGL-PEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGPLR--------EALEALAAELGLEDRVTFLGA 266 (377)
T ss_pred ccC-CCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCcch--------HHHHHHHHhcCCcceEEEeCC
Confidence 111 1234667777876542 233344444444333233444433221110 1111111 113568888899
Q ss_pred cCHH---HHhcccCcceEEe----ccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHH
Q 046033 312 APQA---KILGHGSIGGFIS----HCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEEL 384 (434)
Q Consensus 312 ~p~~---~il~~~~~~~~I~----hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l 384 (434)
+++. .++..+++ +|. -|..+++.||+++|+|+|+.+.. .....++..+.|..+.. -+.+++
T Consensus 267 ~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~~~g~~~~~------~~~~~l 334 (377)
T cd03798 267 VPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDGENGLLVPP------GDPEAL 334 (377)
T ss_pred CCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCCcceeEECC------CCHHHH
Confidence 9876 44555555 662 24567899999999999986543 34455666666777653 478999
Q ss_pred HHHHHHHhcc
Q 046033 385 ARVFKQVVEQ 394 (434)
Q Consensus 385 ~~~v~~ll~~ 394 (434)
.+++.+++++
T Consensus 335 ~~~i~~~~~~ 344 (377)
T cd03798 335 AEAILRLLAD 344 (377)
T ss_pred HHHHHHHhcC
Confidence 9999999994
No 57
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.20 E-value=3.1e-08 Score=94.67 Aligned_cols=312 Identities=14% Similarity=0.149 Sum_probs=154.3
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|+......++++|.++||+|+++++......... ........... . . ...... .
T Consensus 15 G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-------~~~~~~~~~~~--------~--~--------~~~~~~-~ 68 (374)
T cd03817 15 GVATSIRRLAEELEKRGHEVYVVAPSYPGAPEEE-------EVVVVRPFRVP--------T--F--------KYPDFR-L 68 (374)
T ss_pred CeehHHHHHHHHHHHcCCeEEEEeCCCCCCCccc-------ccccccccccc--------c--c--------hhhhhh-c
Confidence 6778889999999999999999987654332222 11111111000 0 0 000000 0
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEcCCC---chHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccccc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYDLFQ---PWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKM 158 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d~~~---~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 158 (434)
.......+...++..+||+|++.... ..+..+++..++|++................ ..
T Consensus 69 ~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~----------------- 130 (374)
T cd03817 69 PLPIPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPL-GR----------------- 130 (374)
T ss_pred cccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhc-cc-----------------
Confidence 00111234456778899999887321 2345667788999988766544322110000 00
Q ss_pred ccccccccCCchhHH-HHHHhhhcCCcEEEEcCCchhcHHHHHHHhhh-cCCceeeeCCCCCCCCCCCCCCchhhhhhhc
Q 046033 159 TQFKHRIVNGTENRD-RFLKAIDLSCKLVLVKTSREIESKDLHYLSYI-TKKETIPVGPLVQEPIYTDNNNDTKIMDWLS 236 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~ 236 (434)
........ .+.......++.++..+.. ..+..... ...++..+.+-..... -.........+-+.
T Consensus 131 -------~~~~~~~~~~~~~~~~~~~d~i~~~s~~-----~~~~~~~~~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~ 197 (374)
T cd03817 131 -------LLARAVVRRKLSRRFYNRCDAVIAPSEK-----IADLLREYGVKRPIEVIPTGIDLDR-FEPVDGDDERRKLG 197 (374)
T ss_pred -------chhHHHHHHHHHHHHhhhCCEEEeccHH-----HHHHHHhcCCCCceEEcCCccchhc-cCccchhHHHHhcC
Confidence 00000111 1222222237777776632 22222221 2223343332221110 00001111111111
Q ss_pred CCCCCceEEEEecCcccC-CHHHHHHHHHHHhh--CCCcEEEEEecCCCCCccccccCchhHHHhh--cCCCCcEEEecc
Q 046033 237 RKEPSSVVYVSFGSEYFL-SKEEMNELASGLLL--SEVSFIWVVRFHSEGNFTIEEALPQGFAEEI--QGNNKGMVVQGW 311 (434)
Q Consensus 237 ~~~~~~vV~vs~Gs~~~~-~~~~~~~i~~~l~~--~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~v~~~~~ 311 (434)
. .+++.+++..|+.... ..+.+..++..+.+ .+.++++.... ... +.+.+.. .+...++.+.++
T Consensus 198 ~-~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~--~~~--------~~~~~~~~~~~~~~~v~~~g~ 266 (374)
T cd03817 198 I-PEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG--PER--------EELEELARELGLADRVIFTGF 266 (374)
T ss_pred C-CCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCC--chH--------HHHHHHHHHcCCCCcEEEecc
Confidence 1 2234666777876542 23444444444443 23344443221 110 1111111 114568888899
Q ss_pred cCHH---HHhcccCcceEEecc----CcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHH
Q 046033 312 APQA---KILGHGSIGGFISHC----GWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEEL 384 (434)
Q Consensus 312 ~p~~---~il~~~~~~~~I~hg----G~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l 384 (434)
+++. .++..+++ +|... ...++.||+++|+|+|+... ...+..++..+.|..+..+ +. ++
T Consensus 267 ~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~~~g~~~~~~------~~-~~ 333 (374)
T cd03817 267 VPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADGENGFLFPPG------DE-AL 333 (374)
T ss_pred CChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecCceeEEeCCC------CH-HH
Confidence 9876 45666665 77433 34789999999999998754 3345566666788877631 22 89
Q ss_pred HHHHHHHhcc
Q 046033 385 ARVFKQVVEQ 394 (434)
Q Consensus 385 ~~~v~~ll~~ 394 (434)
.+++.+++++
T Consensus 334 ~~~i~~l~~~ 343 (374)
T cd03817 334 AEALLRLLQD 343 (374)
T ss_pred HHHHHHHHhC
Confidence 9999999984
No 58
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.18 E-value=3e-07 Score=89.58 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=63.5
Q ss_pred CCcEEEecccCHH---HHhcccCcceEEe---ccCc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeeccccc
Q 046033 303 NKGMVVQGWAPQA---KILGHGSIGGFIS---HCGW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEI 375 (434)
Q Consensus 303 ~~~v~~~~~~p~~---~il~~~~~~~~I~---hgG~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~ 375 (434)
..++.+.++++.. .++..+++ +|. +.|+ .++.||+++|+|+|+....+ ....++..+.|..++.
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~--- 352 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADGETGLLVDG--- 352 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccCCceEECCC---
Confidence 4578888898775 55676665 663 2343 58999999999999875533 3334555567777753
Q ss_pred CCcccHHHHHHHHHHHhcccc-hHHHHHHHHHHH
Q 046033 376 NQRVRKEELARVFKQVVEQEE-GQQIKRKAKELS 408 (434)
Q Consensus 376 ~~~~~~~~l~~~v~~ll~~~~-~~~~~~~a~~l~ 408 (434)
-+.++++++|.+++++.+ ..++++++++..
T Consensus 353 ---~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~ 383 (405)
T TIGR03449 353 ---HDPADWADALARLLDDPRTRIRMGAAAVEHA 383 (405)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 378999999999998422 234455555443
No 59
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.18 E-value=1.2e-07 Score=90.11 Aligned_cols=310 Identities=13% Similarity=0.031 Sum_probs=159.5
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|+...+..+++.|.+.||+|++++............ ..... . .. .. . . . ......
T Consensus 15 G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~-----~~~~~--~------~~--~~-----~---~-~-~~~~~~ 69 (374)
T cd03801 15 GAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV-----GGIVV--V------RP--PP-----L---L-R-VRRLLL 69 (374)
T ss_pred cHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee-----cCcce--e------cC--Cc-----c---c-c-cchhHH
Confidence 678889999999999999999999875544332200 00000 0 00 00 0 0 0 000111
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEcCCCchHH--HHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccccccc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYDLFQPWAA--EAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKMT 159 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 159 (434)
.......+..+++..+||+|++........ ..+...++|++..............
T Consensus 70 ~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~----------------------- 126 (374)
T cd03801 70 LLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNE----------------------- 126 (374)
T ss_pred HHHHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccc-----------------------
Confidence 111233455677888999999884433333 4777889999987655432221000
Q ss_pred cccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCC---ceeeeCCCCCCCCCCCCCCchhhhhhhc
Q 046033 160 QFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKK---ETIPVGPLVQEPIYTDNNNDTKIMDWLS 236 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vGpl~~~~~~~~~~~~~~~~~~l~ 236 (434)
. .................++.+++.+.. ..+.....++. ++..+.+......... ..........
T Consensus 127 ---~--~~~~~~~~~~~~~~~~~~d~~i~~s~~-----~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~ 194 (374)
T cd03801 127 ---L--GLLLKLARALERRALRRADRIIAVSEA-----TREELRELGGVPPEKITVIPNGVDTERFRP--APRAARRRLG 194 (374)
T ss_pred ---h--hHHHHHHHHHHHHHHHhCCEEEEecHH-----HHHHHHhcCCCCCCcEEEecCcccccccCc--cchHHHhhcC
Confidence 0 000011112222222227777777732 33334443332 5555543322211000 0011111111
Q ss_pred CCCCCceEEEEecCcccCCHHHHHHHHHHHh---hCCCcEEEEEecCCCCCccccccCchhHHHhh--cCCCCcEEEecc
Q 046033 237 RKEPSSVVYVSFGSEYFLSKEEMNELASGLL---LSEVSFIWVVRFHSEGNFTIEEALPQGFAEEI--QGNNKGMVVQGW 311 (434)
Q Consensus 237 ~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~---~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~v~~~~~ 311 (434)
. ..++.+++.+|+... .+.+..+++++. +....+-+.+.+.... ...+.... .+...++.+.++
T Consensus 195 ~-~~~~~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~~--------~~~~~~~~~~~~~~~~v~~~g~ 263 (374)
T cd03801 195 I-PEDEPVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLVIVGDGPL--------REELEALAAELGLGDRVTFLGF 263 (374)
T ss_pred C-cCCCeEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEEEEeCcHH--------HHHHHHHHHHhCCCcceEEEec
Confidence 1 223466777777652 223344444443 3211232322221111 01111100 114567888899
Q ss_pred cCHH---HHhcccCcceEEe----ccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHH
Q 046033 312 APQA---KILGHGSIGGFIS----HCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEEL 384 (434)
Q Consensus 312 ~p~~---~il~~~~~~~~I~----hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l 384 (434)
+++. .++..+++ +|+ -|..+++.||+++|+|+|+.+. ......++..+.|..+.. .+++++
T Consensus 264 ~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~~g~~~~~------~~~~~l 331 (374)
T cd03801 264 VPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGETGLLVPP------GDPEAL 331 (374)
T ss_pred cChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCcceEEeCC------CCHHHH
Confidence 9754 55666565 773 2456799999999999998765 345555665677877753 358999
Q ss_pred HHHHHHHhcc
Q 046033 385 ARVFKQVVEQ 394 (434)
Q Consensus 385 ~~~v~~ll~~ 394 (434)
.+++.+++++
T Consensus 332 ~~~i~~~~~~ 341 (374)
T cd03801 332 AEAILRLLDD 341 (374)
T ss_pred HHHHHHHHcC
Confidence 9999999983
No 60
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.18 E-value=1.4e-07 Score=90.68 Aligned_cols=307 Identities=15% Similarity=0.085 Sum_probs=150.6
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|.-.-+..+|+.|.++||+|++++.......... ..++.+..++.+ ..+.. . ....
T Consensus 13 G~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~---------~-~~~~---- 68 (371)
T cd04962 13 GSGVVATELGKALARRGHEVHFITSSRPFRLDEY------SPNIFFHEVEVP----QYPLF---------Q-YPPY---- 68 (371)
T ss_pred CccchHHHHHHHHHhcCCceEEEecCCCcchhhh------ccCeEEEEeccc----ccchh---------h-cchh----
Confidence 3344577899999999999999987643211111 145666544222 11111 0 0000
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEcCCCc--hHHHHHHH-c---CCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYDLFQP--WAAEAAYQ-H---DIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEI 155 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d~~~~--~~~~~A~~-~---giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 155 (434)
.......+.++++..+||+|.+....+ ....++.. . |+|++............
T Consensus 69 ~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~--------------------- 127 (371)
T cd04962 69 DLALASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVG--------------------- 127 (371)
T ss_pred HHHHHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCcccccc---------------------
Confidence 111235666788888999998763222 22333332 2 79988754432110000
Q ss_pred cccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhc--CCceeeeCCCCCCCCCCCCCCchhhhh
Q 046033 156 QKMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYIT--KKETIPVGPLVQEPIYTDNNNDTKIMD 233 (434)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vGpl~~~~~~~~~~~~~~~~~ 233 (434)
. ....... ....+.. ++.+++.+.. ..+.....+ ..++..+........ ..........+
T Consensus 128 --~-------~~~~~~~--~~~~~~~-~d~ii~~s~~-----~~~~~~~~~~~~~~i~vi~n~~~~~~-~~~~~~~~~~~ 189 (371)
T cd04962 128 --Q-------DPSFQPA--TRFSIEK-SDGVTAVSES-----LRQETYELFDITKEIEVIPNFVDEDR-FRPKPDEALKR 189 (371)
T ss_pred --c-------cccchHH--HHHHHhh-CCEEEEcCHH-----HHHHHHHhcCCcCCEEEecCCcCHhh-cCCCchHHHHH
Confidence 0 0000000 1112233 7777766632 222222222 234555543322210 00011222222
Q ss_pred hhcCCCCCceEEEEecCcccC-CHHHHHHHHHHHhh-CCCcEEEEEecCCCCCccccccCchhHHHhh--cCCCCcEEEe
Q 046033 234 WLSRKEPSSVVYVSFGSEYFL-SKEEMNELASGLLL-SEVSFIWVVRFHSEGNFTIEEALPQGFAEEI--QGNNKGMVVQ 309 (434)
Q Consensus 234 ~l~~~~~~~vV~vs~Gs~~~~-~~~~~~~i~~~l~~-~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~v~~~ 309 (434)
.+.... .+.+++..|..... ..+.+.+.+..+.+ .+.+++++.. +. .. +.+.+.. .+...++.+.
T Consensus 190 ~~~~~~-~~~~il~~g~l~~~K~~~~li~a~~~l~~~~~~~l~i~G~-g~-~~--------~~~~~~~~~~~~~~~v~~~ 258 (371)
T cd04962 190 RLGAPE-GEKVLIHISNFRPVKRIDDVIRIFAKVRKEVPARLLLVGD-GP-ER--------SPAERLARELGLQDDVLFL 258 (371)
T ss_pred hcCCCC-CCeEEEEecccccccCHHHHHHHHHHHHhcCCceEEEEcC-Cc-CH--------HHHHHHHHHcCCCceEEEe
Confidence 222222 33666777776532 22333333333332 2445444422 11 10 1111111 0123567777
Q ss_pred cccCHH-HHhcccCcceEEec----cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHH
Q 046033 310 GWAPQA-KILGHGSIGGFISH----CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEEL 384 (434)
Q Consensus 310 ~~~p~~-~il~~~~~~~~I~h----gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l 384 (434)
++.++. .++..+++ +|.- |...++.||+++|+|+|+.... ..+..++.-..|..++. -+.+++
T Consensus 259 g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~~~G~~~~~------~~~~~l 326 (371)
T cd04962 259 GKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHGETGFLVDV------GDVEAM 326 (371)
T ss_pred cCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCCCceEEcCC------CCHHHH
Confidence 776653 66665555 7733 3346999999999999986443 34455555456766652 368999
Q ss_pred HHHHHHHhcc
Q 046033 385 ARVFKQVVEQ 394 (434)
Q Consensus 385 ~~~v~~ll~~ 394 (434)
.+++.+++++
T Consensus 327 ~~~i~~l~~~ 336 (371)
T cd04962 327 AEYALSLLED 336 (371)
T ss_pred HHHHHHHHhC
Confidence 9999999983
No 61
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.18 E-value=1.3e-07 Score=91.87 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=56.7
Q ss_pred CCcEEEecccCHHH---HhcccCcceEEe---ccCc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeeccccc
Q 046033 303 NKGMVVQGWAPQAK---ILGHGSIGGFIS---HCGW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEI 375 (434)
Q Consensus 303 ~~~v~~~~~~p~~~---il~~~~~~~~I~---hgG~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~ 375 (434)
..++.+.+++|+.. ++..+++ +|. +.|. .++.||+++|+|+|.... ......++.-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~~~G~lv~~--- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDGENGLLVDF--- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccCCceEEcCC---
Confidence 46788889998764 4556666 653 2232 479999999999998743 234444554456776653
Q ss_pred CCcccHHHHHHHHHHHhcc
Q 046033 376 NQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 376 ~~~~~~~~l~~~v~~ll~~ 394 (434)
-+++++.++|.+++++
T Consensus 351 ---~d~~~la~~i~~ll~~ 366 (396)
T cd03818 351 ---FDPDALAAAVIELLDD 366 (396)
T ss_pred ---CCHHHHHHHHHHHHhC
Confidence 3699999999999994
No 62
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.18 E-value=1.3e-07 Score=90.28 Aligned_cols=313 Identities=16% Similarity=0.063 Sum_probs=158.6
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCch-hhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHH
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINL-QSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDA 84 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~-~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
-...+|++|+++||+|++++..... +.+.. .|++++.++.. . . .....+.
T Consensus 15 ~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~-------~~~~~~~~~~~---~----~----------~~~~~~~----- 65 (355)
T cd03819 15 GTLELARALVERGHRSLVASAGGRLVAELEA-------EGSRHIKLPFI---S----K----------NPLRILL----- 65 (355)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCchHHHHHh-------cCCeEEEcccc---c----c----------chhhhHH-----
Confidence 4678999999999999999865332 23333 56777665222 0 0 0011111
Q ss_pred hHHHHHHHHhhcCCCEEEEcCC--CchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccccccccc
Q 046033 85 AKPAFCNVLETLKPTLVIYDLF--QPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKMTQFK 162 (434)
Q Consensus 85 ~~~~~~~~l~~~~pDlVi~d~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 162 (434)
....+...++..+||+|++... .+.+..+++.+++|++...........
T Consensus 66 ~~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----------------------------- 116 (355)
T cd03819 66 NVARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHGFYSVNF----------------------------- 116 (355)
T ss_pred HHHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCCchhhHH-----------------------------
Confidence 1233556778889999998732 234455677789999876544321110
Q ss_pred ccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhc--C-CceeeeCCCCCCCC-CCCCCCchh---hhhhh
Q 046033 163 HRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYIT--K-KETIPVGPLVQEPI-YTDNNNDTK---IMDWL 235 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~vGpl~~~~~-~~~~~~~~~---~~~~l 235 (434)
.....+.. ++.++..+. ...+.....+ + .++..++.-..... ......+.+ +.+-+
T Consensus 117 -----------~~~~~~~~-~~~vi~~s~-----~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~ 179 (355)
T cd03819 117 -----------RYNAIMAR-GDRVIAVSN-----FIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREW 179 (355)
T ss_pred -----------HHHHHHHh-cCEEEEeCH-----HHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHc
Confidence 00111223 666666552 2222222222 1 34555543222111 000001111 11111
Q ss_pred cCCCCCceEEEEecCccc-CCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhh--cCCCCcEEEeccc
Q 046033 236 SRKEPSSVVYVSFGSEYF-LSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEI--QGNNKGMVVQGWA 312 (434)
Q Consensus 236 ~~~~~~~vV~vs~Gs~~~-~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~v~~~~~~ 312 (434)
.. ++...+++..|.... -..+.+..++..+.+.+..+.+.+.+..... ....+...+.. .+...++.+.++.
T Consensus 180 ~~-~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~----~~~~~~~~~~~~~~~~~~~v~~~g~~ 254 (355)
T cd03819 180 PL-PKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGR----RFYYAELLELIKRLGLQDRVTFVGHC 254 (355)
T ss_pred CC-CCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCccc----chHHHHHHHHHHHcCCcceEEEcCCc
Confidence 22 223466777777654 2345555566666553323333322221111 01111111111 0134578888874
Q ss_pred CHH-HHhcccCcceEEecc----C-cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHH
Q 046033 313 PQA-KILGHGSIGGFISHC----G-WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELAR 386 (434)
Q Consensus 313 p~~-~il~~~~~~~~I~hg----G-~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~ 386 (434)
+.. .++..+++ +|+-. | ..+++||+++|+|+|+.... .....+...+.|..++. -+.+++.+
T Consensus 255 ~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~~~g~~~~~------~~~~~l~~ 322 (355)
T cd03819 255 SDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPGETGLLVPP------GDAEALAQ 322 (355)
T ss_pred ccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCCCceEEeCC------CCHHHHHH
Confidence 433 66666666 66432 3 35999999999999987533 23444555557877753 37899999
Q ss_pred HHHHHhc-ccc-hHHHHHHHHHHHHH
Q 046033 387 VFKQVVE-QEE-GQQIKRKAKELSES 410 (434)
Q Consensus 387 ~v~~ll~-~~~-~~~~~~~a~~l~~~ 410 (434)
+|..++. +++ ..+++++|++..+.
T Consensus 323 ~i~~~~~~~~~~~~~~~~~a~~~~~~ 348 (355)
T cd03819 323 ALDQILSLLPEGRAKMFAKARMCVET 348 (355)
T ss_pred HHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 9976665 211 23455555554443
No 63
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.17 E-value=1.6e-07 Score=89.00 Aligned_cols=304 Identities=16% Similarity=0.111 Sum_probs=153.4
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhh-hhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQS-MSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~-v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|+......++++|.++||+|++++....... ... .|++++.++.. .. . ......+..
T Consensus 11 g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~---~---------~~~~~~~~~ 68 (359)
T cd03808 11 GLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEA-------LGVKVIPIPLD---RR---G---------INPFKDLKA 68 (359)
T ss_pred hHHHHHHHHHHHHHhcCCeeEEEecCCCccccccc-------CCceEEecccc---cc---c---------cChHhHHHH
Confidence 5667788999999999999999998765543 333 66777666322 10 0 001111111
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEcCCCc--hHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccccc
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYDLFQP--WAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKM 158 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 158 (434)
...+.++++..+||+|++..... .+..+++..+.|.+.............
T Consensus 69 -----~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------------------- 120 (359)
T cd03808 69 -----LLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVFTS----------------------- 120 (359)
T ss_pred -----HHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhhcc-----------------------
Confidence 12455778888999998874322 234445545665555443322111000
Q ss_pred ccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcC----CceeeeCCCCCCCCCCCCCCchhhhhh
Q 046033 159 TQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITK----KETIPVGPLVQEPIYTDNNNDTKIMDW 234 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vGpl~~~~~~~~~~~~~~~~~~ 234 (434)
. .........+.......++.++..+.. ..+....... ..+..++....... .... .
T Consensus 121 ~------~~~~~~~~~~~~~~~~~~d~ii~~s~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~---- 181 (359)
T cd03808 121 G------GLKRRLYLLLERLALRFTDKVIFQNED-----DRDLALKLGIIKKKKTVLIPGSGVDLDR---FSPS-P---- 181 (359)
T ss_pred c------hhHHHHHHHHHHHHHhhccEEEEcCHH-----HHHHHHHhcCCCcCceEEecCCCCChhh---cCcc-c----
Confidence 0 000011112222222226677776632 2222322221 22332222211100 0000 0
Q ss_pred hcCCCCCceEEEEecCcccC-CHHHHHHHHHHHhh--CCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecc
Q 046033 235 LSRKEPSSVVYVSFGSEYFL-SKEEMNELASGLLL--SEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGW 311 (434)
Q Consensus 235 l~~~~~~~vV~vs~Gs~~~~-~~~~~~~i~~~l~~--~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~ 311 (434)
....+++.+++..|+.... ..+.+.+.+..+.+ .+.++++..... ... ... .....+. ....++.+.++
T Consensus 182 -~~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~-~~~-~~~----~~~~~~~-~~~~~v~~~g~ 253 (359)
T cd03808 182 -EPIPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGD-EEN-PAA----ILEIEKL-GLEGRVEFLGF 253 (359)
T ss_pred -cccCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCC-cch-hhH----HHHHHhc-CCcceEEEeec
Confidence 0012345778888876542 23444444555543 233444332221 110 000 0000010 13456777666
Q ss_pred cCH-HHHhcccCcceEEeccC----cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHH
Q 046033 312 APQ-AKILGHGSIGGFISHCG----WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELAR 386 (434)
Q Consensus 312 ~p~-~~il~~~~~~~~I~hgG----~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~ 386 (434)
..+ ..++..+++ +|+.+. .+++.||+++|+|+|+.+..+ +...++..+.|..++. -+++++.+
T Consensus 254 ~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~~~g~~~~~------~~~~~~~~ 321 (359)
T cd03808 254 RDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDGVNGFLVPP------GDAEALAD 321 (359)
T ss_pred cccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcCcceEEECC------CCHHHHHH
Confidence 433 366776666 775433 578999999999999875443 3445555567877753 36899999
Q ss_pred HHHHHhcc
Q 046033 387 VFKQVVEQ 394 (434)
Q Consensus 387 ~v~~ll~~ 394 (434)
++.+++.+
T Consensus 322 ~i~~l~~~ 329 (359)
T cd03808 322 AIERLIED 329 (359)
T ss_pred HHHHHHhC
Confidence 99999984
No 64
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.12 E-value=1.8e-07 Score=88.26 Aligned_cols=308 Identities=16% Similarity=0.151 Sum_probs=153.2
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|...-+..++++|.++||+|++++......... ....++.+..++.. ... . . ..
T Consensus 14 G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~-----~~~~~~~~~~~~~~----------~~~--~----~-----~~ 67 (348)
T cd03820 14 GAERVLSNLANALAEKGHEVTIISLDKGEPPFY-----ELDPKIKVIDLGDK----------RDS--K----L-----LA 67 (348)
T ss_pred ChHHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-----ccCCccceeecccc----------ccc--c----h-----hc
Confidence 334456789999999999999998875540000 11144555444111 000 0 0 00
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCC-cEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccccccc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDI-AAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKMTQ 160 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~gi-P~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 160 (434)
.......+.++++..+||+|++..........+...+. |++...........
T Consensus 68 ~~~~~~~~~~~l~~~~~d~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------------------- 120 (348)
T cd03820 68 RFKKLRRLRKLLKNNKPDVVISFLTSLLTFLASLGLKIVKLIVSEHNSPDAYK--------------------------- 120 (348)
T ss_pred cccchHHHHHhhcccCCCEEEEcCchHHHHHHHHhhccccEEEecCCCccchh---------------------------
Confidence 00112345567787899999998543344555555665 77765433221110
Q ss_pred ccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcCCCC
Q 046033 161 FKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSRKEP 240 (434)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~ 240 (434)
.. ..........+.. ++.++..+.... .......+.++..+++...... .... ...
T Consensus 121 -----~~-~~~~~~~~~~~~~-~d~ii~~s~~~~-----~~~~~~~~~~~~vi~~~~~~~~-----~~~~-------~~~ 176 (348)
T cd03820 121 -----KR-LRRLLLRRLLYRR-ADAVVVLTEEDR-----ALYYKKFNKNVVVIPNPLPFPP-----EEPS-------SDL 176 (348)
T ss_pred -----hh-hHHHHHHHHHHhc-CCEEEEeCHHHH-----HHhhccCCCCeEEecCCcChhh-----cccc-------CCC
Confidence 00 0000011222333 777777764332 1112223456666654433211 0000 122
Q ss_pred CceEEEEecCccc-CCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCH-HHHh
Q 046033 241 SSVVYVSFGSEYF-LSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQ-AKIL 318 (434)
Q Consensus 241 ~~vV~vs~Gs~~~-~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~-~~il 318 (434)
++.+++..|+... ...+.+..++..+.+....+-+.+.+..... ..+.+ ...+. +...++.+..+... ..++
T Consensus 177 ~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~~~~----~~~~~-~~~~~-~~~~~v~~~g~~~~~~~~~ 250 (348)
T cd03820 177 KSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDGPER----EALEA-LIKEL-GLEDRVILLGFTKNIEEYY 250 (348)
T ss_pred CCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCCCCH----HHHHH-HHHHc-CCCCeEEEcCCcchHHHHH
Confidence 3355666676544 2234444445444432223222222211110 00100 11111 13456666665332 3666
Q ss_pred cccCcceEEeccC----cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhc-eeeeecccccCCcccHHHHHHHHHHHhc
Q 046033 319 GHGSIGGFISHCG----WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIG-VGLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 319 ~~~~~~~~I~hgG----~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G-~g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
..+++ +|.... .+++.||+++|+|+|+.+..+.+. .+...| .|..++. .+.+++.++|.++++
T Consensus 251 ~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~~------~~~~~~~~~i~~ll~ 318 (348)
T cd03820 251 AKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVPN------GDVEALAEALLRLME 318 (348)
T ss_pred HhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeCC------CCHHHHHHHHHHHHc
Confidence 76665 775542 578999999999999876544332 233344 7777752 368999999999999
Q ss_pred ccchHHHHHHHHHH
Q 046033 394 QEEGQQIKRKAKEL 407 (434)
Q Consensus 394 ~~~~~~~~~~a~~l 407 (434)
+++.+++..+-
T Consensus 319 ---~~~~~~~~~~~ 329 (348)
T cd03820 319 ---DEELRKRMGAN 329 (348)
T ss_pred ---CHHHHHHHHHH
Confidence 55544444433
No 65
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.07 E-value=3.2e-07 Score=89.16 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=52.1
Q ss_pred CCcEEEecccCHH---HHhcccCcceEEec---cCc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeeccccc
Q 046033 303 NKGMVVQGWAPQA---KILGHGSIGGFISH---CGW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEI 375 (434)
Q Consensus 303 ~~~v~~~~~~p~~---~il~~~~~~~~I~h---gG~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~ 375 (434)
..++.+.+++++. .+++.+++ +|.- -|. .++.||+++|+|+|+.+..+- ...++. |.+....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~~-~~~~~~~---- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLPP-DMILLAE---- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhheeC-CceeecC----
Confidence 4568888998865 45565665 7643 244 499999999999998765431 223332 3333332
Q ss_pred CCcccHHHHHHHHHHHhcc
Q 046033 376 NQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 376 ~~~~~~~~l~~~v~~ll~~ 394 (434)
.+.+++.+++.+++++
T Consensus 318 ---~~~~~l~~~l~~~l~~ 333 (398)
T cd03796 318 ---PDVESIVRKLEEAISI 333 (398)
T ss_pred ---CCHHHHHHHHHHHHhC
Confidence 2789999999999984
No 66
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.06 E-value=3.3e-07 Score=87.39 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=78.4
Q ss_pred ceEEEEecCcccCCHHHHHHHHHHHhhCC-CcEEEEEecCCCCCccccccCchhHHHhh--cCCCCcEEEecccCHH---
Q 046033 242 SVVYVSFGSEYFLSKEEMNELASGLLLSE-VSFIWVVRFHSEGNFTIEEALPQGFAEEI--QGNNKGMVVQGWAPQA--- 315 (434)
Q Consensus 242 ~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~-~~~i~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~v~~~~~~p~~--- 315 (434)
+.+++..|+... .+.+..++++++... .+++++..+ .. .+.+.+.. .+...|+.+.+|+++.
T Consensus 191 ~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~l~i~G~g--~~--------~~~~~~~~~~~~~~~~V~~~g~v~~~~~~ 258 (357)
T cd03795 191 RPFFLFVGRLVY--YKGLDVLLEAAAALPDAPLVIVGEG--PL--------EAELEALAAALGLLDRVRFLGRLDDEEKA 258 (357)
T ss_pred CcEEEEeccccc--ccCHHHHHHHHHhccCcEEEEEeCC--hh--------HHHHHHHHHhcCCcceEEEcCCCCHHHHH
Confidence 356677777643 234555666666555 444433211 11 01111111 1245789999999976
Q ss_pred HHhcccCcceEEe-----ccCc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHH
Q 046033 316 KILGHGSIGGFIS-----HCGW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFK 389 (434)
Q Consensus 316 ~il~~~~~~~~I~-----hgG~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~ 389 (434)
.++..+++ +|. +.|. .++.||+++|+|+|+....+....... ..+.|..... -+.+++.++|.
T Consensus 259 ~~~~~ad~--~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~~~g~~~~~------~d~~~~~~~i~ 327 (357)
T cd03795 259 ALLAACDV--FVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HGVTGLVVPP------GDPAALAEAIR 327 (357)
T ss_pred HHHHhCCE--EEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CCCceEEeCC------CCHHHHHHHHH
Confidence 45555555 652 2343 479999999999999765554433322 2467766642 37999999999
Q ss_pred HHhcc
Q 046033 390 QVVEQ 394 (434)
Q Consensus 390 ~ll~~ 394 (434)
+++++
T Consensus 328 ~l~~~ 332 (357)
T cd03795 328 RLLED 332 (357)
T ss_pred HHHHC
Confidence 99994
No 67
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.04 E-value=4.4e-08 Score=91.74 Aligned_cols=190 Identities=19% Similarity=0.193 Sum_probs=109.8
Q ss_pred CCceeeeCCCCCCCCCCCCCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCc-EEEEEecCCCCCc
Q 046033 207 KKETIPVGPLVQEPIYTDNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVS-FIWVVRFHSEGNF 285 (434)
Q Consensus 207 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~-~i~~~~~~~~~~~ 285 (434)
+.++.+||....+.. . ....+ + .++++|.+--||-...-...+..++++.+....+ .++.+......
T Consensus 143 g~~~~~VGhPl~d~~-~--~~~~~----~---~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~-- 210 (347)
T PRK14089 143 QSKATYVGHPLLDEI-K--EFKKD----L---DKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFKG-- 210 (347)
T ss_pred CCCCEEECCcHHHhh-h--hhhhh----c---CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCcH--
Confidence 567889996544311 0 00111 2 1236899988987653234444444554432221 23333221110
Q ss_pred cccccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEec-cCCCChhhHHHHHH--
Q 046033 286 TIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAV-PMVLDQLFNAKMVA-- 362 (434)
Q Consensus 286 ~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~-P~~~dq~~na~~~~-- 362 (434)
+.+.+... ....+.+.+ .-..++..+++ +|+-+|..|+ |++++|+|+|+. ....-|+.||+++.
T Consensus 211 -------~~i~~~~~-~~~~~~~~~--~~~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~ 277 (347)
T PRK14089 211 -------KDLKEIYG-DISEFEISY--DTHKALLEAEF--AFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKL 277 (347)
T ss_pred -------HHHHHHHh-cCCCcEEec--cHHHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcC
Confidence 11111110 111222222 23467776666 9999999999 999999999884 34667999999999
Q ss_pred -hhceeeeecc---------cccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcchHHHHHHHHH
Q 046033 363 -DIGVGLEVPR---------DEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKGDDEEINVVEK 425 (434)
Q Consensus 363 -~~G~g~~~~~---------~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ve~ 425 (434)
..|++-.+-. +=..+++|++.+.+.+.+. . ..++++...++.+.+...+...+++.+.+
T Consensus 278 ~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~-~---~~~~~~~~~~l~~~l~~~a~~~~A~~i~~ 346 (347)
T PRK14089 278 KHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKEM-D---REKFFKKSKELREYLKHGSAKNVAKILKE 346 (347)
T ss_pred CeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHHH-H---HHHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 4565544411 0013568999999999883 3 46788888888888754225556655543
No 68
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.02 E-value=2.5e-08 Score=95.70 Aligned_cols=331 Identities=15% Similarity=0.174 Sum_probs=164.4
Q ss_pred hHHHHHHHHHHHhC-CCEEEEEeCCCchhhhhhhhcccCCCCeEE-EEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 4 ITPYLALAKKLSQQ-NFHIYFCSTPINLQSMSQNLQEKFSTSIQL-IDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 4 ~~p~l~lA~~L~~~-Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
+.-+.++.++|.++ +.++.++.+..+...+..... . -++.. +.+.. .+ . + .... ..
T Consensus 13 ~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~-~--~~i~~~~~~~~----~~-~-~---------~~~~----~~ 70 (365)
T TIGR00236 13 AIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLD-L--FHLPPDYDLNI----MS-P-G---------QTLG----EI 70 (365)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHH-h--cCCCCCeeeec----CC-C-C---------CCHH----HH
Confidence 44567888899876 667777777766644433210 0 11110 11100 00 0 0 1122 22
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEc--CCC-chHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccccc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYD--LFQ-PWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKM 158 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d--~~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 158 (434)
.......+.+++++.+||+|++. ... .+++.+|..+|||++.+..... .... +
T Consensus 71 ~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~~-s~~~-----------------------~ 126 (365)
T TIGR00236 71 TSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGLR-TGDR-----------------------Y 126 (365)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCCC-cCCC-----------------------C
Confidence 22334677789999999999876 222 4578899999999986532210 0000 0
Q ss_pred ccccccccCCchhHHH-HHHhhhcCCcEEEEcCCchhcHHHHHHHhh-hcC-CceeeeCCCCCCCC--CCCCCCchhhhh
Q 046033 159 TQFKHRIVNGTENRDR-FLKAIDLSCKLVLVKTSREIESKDLHYLSY-ITK-KETIPVGPLVQEPI--YTDNNNDTKIMD 233 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~vGpl~~~~~--~~~~~~~~~~~~ 233 (434)
..+ .....+ ....+ ++.++..+- ...+.+.. ..+ .++..+|....+.. ........++.+
T Consensus 127 ~~~-------~~~~~r~~~~~~---ad~~~~~s~-----~~~~~l~~~G~~~~~I~vign~~~d~~~~~~~~~~~~~~~~ 191 (365)
T TIGR00236 127 SPM-------PEEINRQLTGHI---ADLHFAPTE-----QAKDNLLRENVKADSIFVTGNTVIDALLTNVEIAYSSPVLS 191 (365)
T ss_pred CCC-------ccHHHHHHHHHH---HHhccCCCH-----HHHHHHHHcCCCcccEEEeCChHHHHHHHHHhhccchhHHH
Confidence 000 000111 11111 333444441 22222222 232 35777886532210 000001122222
Q ss_pred hhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhC-----CCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEE
Q 046033 234 WLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLS-----EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVV 308 (434)
Q Consensus 234 ~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~-----~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~ 308 (434)
.+. .++++|+++++-.... .+.+..+++++... +..+++..... .. .. +.+.+.. +...++.+
T Consensus 192 ~~~--~~~~~vl~~~hr~~~~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~-~~---~~----~~~~~~~-~~~~~v~~ 259 (365)
T TIGR00236 192 EFG--EDKRYILLTLHRRENV-GEPLENIFKAIREIVEEFEDVQIVYPVHLN-PV---VR----EPLHKHL-GDSKRVHL 259 (365)
T ss_pred hcC--CCCCEEEEecCchhhh-hhHHHHHHHHHHHHHHHCCCCEEEEECCCC-hH---HH----HHHHHHh-CCCCCEEE
Confidence 232 2234676665432211 13466677666542 34444442211 11 00 1111111 13357877
Q ss_pred ecccCHH---HHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHH
Q 046033 309 QGWAPQA---KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELA 385 (434)
Q Consensus 309 ~~~~p~~---~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~ 385 (434)
.+.++.. .++..+++ +|+.+|.. +.||+++|+|+|.++..++++. +...|.+..+. -+++++.
T Consensus 260 ~~~~~~~~~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~-------~d~~~i~ 325 (365)
T TIGR00236 260 IEPLEYLDFLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVG-------TDKENIT 325 (365)
T ss_pred ECCCChHHHHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhcCceEEeC-------CCHHHHH
Confidence 7766654 44555554 99877644 7999999999999976555542 22357776554 2789999
Q ss_pred HHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHH
Q 046033 386 RVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLL 427 (434)
Q Consensus 386 ~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~ 427 (434)
+++.++++ ++..+++.. +.....+ ..+..++++.|.
T Consensus 326 ~ai~~ll~---~~~~~~~~~---~~~~~~g~~~a~~ri~~~l~ 362 (365)
T TIGR00236 326 KAAKRLLT---DPDEYKKMS---NASNPYGDGEASERIVEELL 362 (365)
T ss_pred HHHHHHHh---ChHHHHHhh---hcCCCCcCchHHHHHHHHHH
Confidence 99999998 555555443 3323233 344455555543
No 69
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.01 E-value=1.7e-06 Score=82.15 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=51.6
Q ss_pred CcEEEecccCH-HHHhcccCcceEEeccC----cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCc
Q 046033 304 KGMVVQGWAPQ-AKILGHGSIGGFISHCG----WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQR 378 (434)
Q Consensus 304 ~~v~~~~~~p~-~~il~~~~~~~~I~hgG----~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~ 378 (434)
.++.+.+.... ..++..+++ +|..+. .+++.||+++|+|+|+.... .+...+.. .|..+..
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~--~g~~~~~------ 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD--TGFLVPP------ 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc--CCEEeCC------
Confidence 45655554433 366776665 776544 47999999999999986443 33444444 4555542
Q ss_pred ccHHHHHHHHHHHhcc
Q 046033 379 VRKEELARVFKQVVEQ 394 (434)
Q Consensus 379 ~~~~~l~~~v~~ll~~ 394 (434)
-+.+++.+++.+++++
T Consensus 317 ~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 317 GDPEALAEAIEALLAD 332 (365)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 2689999999999994
No 70
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.00 E-value=7.3e-07 Score=85.11 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=65.2
Q ss_pred CCcEEEecccCH-HHHhcccCcceEEecc----CcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCC
Q 046033 303 NKGMVVQGWAPQ-AKILGHGSIGGFISHC----GWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQ 377 (434)
Q Consensus 303 ~~~v~~~~~~p~-~~il~~~~~~~~I~hg----G~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~ 377 (434)
..++.+.++..+ ..++..+++ +|.-. ..+++.||+++|+|+|+.. ...+...++..|..+..
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~~----~~~~~e~i~~~g~~~~~------- 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVATD----AGGVREVVGDSGLIVPI------- 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEec----CCChhhEecCCceEeCC-------
Confidence 457777776654 366776666 66433 2578999999999999753 33444455554444332
Q ss_pred cccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Q 046033 378 RVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK-KGDDEEINVVEKL 426 (434)
Q Consensus 378 ~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~-~~~~~~~~~ve~l 426 (434)
-+.+++.+++.+++++ ++.+++....-++.+.+ ...+..++-.+++
T Consensus 311 -~~~~~~~~~i~~ll~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 357 (360)
T cd04951 311 -SDPEALANKIDEILKM--SGEERDIIGARRERIVKKFSINSIVQQWLTL 357 (360)
T ss_pred -CCHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3789999999999853 34444444433333333 3344444444443
No 71
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=1.8e-06 Score=80.59 Aligned_cols=302 Identities=16% Similarity=0.196 Sum_probs=174.6
Q ss_pred CChHHHHHHHHHHHhC--CCEEEEEe-CCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHH
Q 046033 2 GHITPYLALAKKLSQQ--NFHIYFCS-TPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTL 78 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~--Gh~V~~~~-~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
|-++-+++|-++|+++ ++.|++-+ ++...+.+.+. ++..+...-+|++ ...
T Consensus 60 GEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~----~~~~v~h~YlP~D--------------------~~~-- 113 (419)
T COG1519 60 GEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAAL----FGDSVIHQYLPLD--------------------LPI-- 113 (419)
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHH----cCCCeEEEecCcC--------------------chH--
Confidence 6678889999999999 88888876 67777777663 1122333223211 111
Q ss_pred HHHHHHhHHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccc
Q 046033 79 IEAFDAAKPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQ 156 (434)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 156 (434)
...+.++.++||++|.- -..+....-+++.|+|.+.++.=.. ..
T Consensus 114 ---------~v~rFl~~~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRLS-------------------------~r 159 (419)
T COG1519 114 ---------AVRRFLRKWRPKLLIIMETELWPNLINELKRRGIPLVLVNARLS-------------------------DR 159 (419)
T ss_pred ---------HHHHHHHhcCCCEEEEEeccccHHHHHHHHHcCCCEEEEeeeec-------------------------hh
Confidence 23356778899987644 3445567778889999998652111 01
Q ss_pred ccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhc
Q 046033 157 KMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLS 236 (434)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~ 236 (434)
++.+ +..+..+...+..+-+.++.-+- .+. +.+...--+++..+|.+-.+.. .......++..|-.
T Consensus 160 S~~~--------y~k~~~~~~~~~~~i~li~aQse--~D~---~Rf~~LGa~~v~v~GNlKfd~~-~~~~~~~~~~~~r~ 225 (419)
T COG1519 160 SFAR--------YAKLKFLARLLFKNIDLILAQSE--EDA---QRFRSLGAKPVVVTGNLKFDIE-PPPQLAAELAALRR 225 (419)
T ss_pred hhHH--------HHHHHHHHHHHHHhcceeeecCH--HHH---HHHHhcCCcceEEecceeecCC-CChhhHHHHHHHHH
Confidence 1111 12233333333333566666552 222 2233333345888898865532 11112222222222
Q ss_pred CCCCCceEEEEecCcccCCHHHHHHHHHHHhhCC--CcEEEEEecCCCCCccccccCchhHHHhh------------cCC
Q 046033 237 RKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSE--VSFIWVVRFHSEGNFTIEEALPQGFAEEI------------QGN 302 (434)
Q Consensus 237 ~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~--~~~i~~~~~~~~~~~~~~~~~p~~~~~~~------------~~~ 302 (434)
.-+....+.|..+|+. ...+.+-....++.+.. ...||+=...+.-. + . ++...+. ...
T Consensus 226 ~l~~~r~v~iaaSTH~-GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~-~----v-~~l~~~~gl~~~~rS~~~~~~~ 298 (419)
T COG1519 226 QLGGHRPVWVAASTHE-GEEEIILDAHQALKKQFPNLLLILVPRHPERFK-A----V-ENLLKRKGLSVTRRSQGDPPFS 298 (419)
T ss_pred hcCCCCceEEEecCCC-chHHHHHHHHHHHHhhCCCceEEEecCChhhHH-H----H-HHHHHHcCCeEEeecCCCCCCC
Confidence 2221125566666643 34566666777776643 45666644332100 0 0 0000000 013
Q ss_pred CCcEEEecccCHH-HHhcccCcceEE-----eccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccC
Q 046033 303 NKGMVVQGWAPQA-KILGHGSIGGFI-----SHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEIN 376 (434)
Q Consensus 303 ~~~v~~~~~~p~~-~il~~~~~~~~I-----~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~ 376 (434)
..++.+.+-+.-. ..+.-+++ +|| -+||.| .+|+++.|+|+|.-|...-|..-++++++.|+|+.++
T Consensus 299 ~tdV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~----- 371 (419)
T COG1519 299 DTDVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE----- 371 (419)
T ss_pred CCcEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC-----
Confidence 3456666555444 33333443 343 588888 7899999999999999999999999999999999996
Q ss_pred CcccHHHHHHHHHHHhcc
Q 046033 377 QRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~ 394 (434)
+.+.+.+++..++++
T Consensus 372 ---~~~~l~~~v~~l~~~ 386 (419)
T COG1519 372 ---DADLLAKAVELLLAD 386 (419)
T ss_pred ---CHHHHHHHHHHhcCC
Confidence 578888999888884
No 72
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.94 E-value=1.6e-06 Score=83.96 Aligned_cols=80 Identities=15% Similarity=0.124 Sum_probs=56.8
Q ss_pred CCCcEEEecccCHH---HHhcccCcceEEecc---C-cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccc
Q 046033 302 NNKGMVVQGWAPQA---KILGHGSIGGFISHC---G-WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDE 374 (434)
Q Consensus 302 ~~~~v~~~~~~p~~---~il~~~~~~~~I~hg---G-~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~ 374 (434)
..+++.+.++++.. .++..+++ ++... | ..++.||+++|+|+|+.-..+ ....+...+.|..++
T Consensus 278 l~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~~~~--- 348 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGFLCE--- 348 (392)
T ss_pred CCceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceEEeC---
Confidence 35688899999886 45666665 66422 2 357899999999999874433 333454546777764
Q ss_pred cCCcccHHHHHHHHHHHhcc
Q 046033 375 INQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 375 ~~~~~~~~~l~~~v~~ll~~ 394 (434)
.+++++.++|.+++++
T Consensus 349 ----~~~~~~a~~i~~l~~~ 364 (392)
T cd03805 349 ----PTPEEFAEAMLKLAND 364 (392)
T ss_pred ----CCHHHHHHHHHHHHhC
Confidence 2689999999999984
No 73
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.94 E-value=6.1e-06 Score=81.22 Aligned_cols=82 Identities=17% Similarity=0.177 Sum_probs=56.0
Q ss_pred CCcEEEecccCHHHH---hccc--CcceEEecc---C-cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeeccc
Q 046033 303 NKGMVVQGWAPQAKI---LGHG--SIGGFISHC---G-WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRD 373 (434)
Q Consensus 303 ~~~v~~~~~~p~~~i---l~~~--~~~~~I~hg---G-~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~ 373 (434)
..++.+..++++.++ +..+ +++++|... | ..+++||+++|+|+|+....+ ....++....|+.++.
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~~~G~lv~~- 390 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANCRNGLLVDV- 390 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCCCcEEEeCC-
Confidence 356777677776543 4444 234587643 3 359999999999999886533 3444444456777753
Q ss_pred ccCCcccHHHHHHHHHHHhcc
Q 046033 374 EINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 374 ~~~~~~~~~~l~~~v~~ll~~ 394 (434)
-+++++.++|.+++++
T Consensus 391 -----~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 391 -----LDLEAIASALEDALSD 406 (439)
T ss_pred -----CCHHHHHHHHHHHHhC
Confidence 3789999999999993
No 74
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.94 E-value=5.6e-06 Score=78.97 Aligned_cols=80 Identities=21% Similarity=0.373 Sum_probs=55.3
Q ss_pred CCCcEEEec-ccCHH---HHhcccCcceEEec------cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeec
Q 046033 302 NNKGMVVQG-WAPQA---KILGHGSIGGFISH------CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVP 371 (434)
Q Consensus 302 ~~~~v~~~~-~~p~~---~il~~~~~~~~I~h------gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~ 371 (434)
...++.+.. |+++. .++..+++ +|.- |..+++.||+++|+|+|..+..+ ...+...+.|..+.
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~ 317 (366)
T cd03822 245 LADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVP 317 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEc
Confidence 345677664 47765 55565555 6632 33468999999999999887544 23344456777775
Q ss_pred ccccCCcccHHHHHHHHHHHhcc
Q 046033 372 RDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 372 ~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
. -+.+++.+++.+++++
T Consensus 318 ~------~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 318 P------GDPAALAEAIRRLLAD 334 (366)
T ss_pred C------CCHHHHHHHHHHHHcC
Confidence 3 3689999999999994
No 75
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.91 E-value=1.4e-06 Score=83.49 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=59.2
Q ss_pred CCcEEEecccCHH---HHhcccCcceEEecc----------CcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeee
Q 046033 303 NKGMVVQGWAPQA---KILGHGSIGGFISHC----------GWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLE 369 (434)
Q Consensus 303 ~~~v~~~~~~p~~---~il~~~~~~~~I~hg----------G~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~ 369 (434)
..++.+.+++++. .++..+++ +|..+ -.+++.||+++|+|+|..+..+ +...+...+.|..
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~~ 317 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDGETGLL 317 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecCCeeEE
Confidence 4678888898875 44665665 66422 2578999999999999876543 5556666678887
Q ss_pred ecccccCCcccHHHHHHHHHHHhcc
Q 046033 370 VPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
++. -+.+++.++|.+++++
T Consensus 318 ~~~------~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 318 VPE------GDVAALAAALGRLLAD 336 (367)
T ss_pred ECC------CCHHHHHHHHHHHHcC
Confidence 753 3789999999999994
No 76
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.90 E-value=3.6e-06 Score=80.33 Aligned_cols=79 Identities=16% Similarity=0.258 Sum_probs=56.6
Q ss_pred CCCcEEEecccCHH---HHhcccCcceEEecc---C-cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccc
Q 046033 302 NNKGMVVQGWAPQA---KILGHGSIGGFISHC---G-WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDE 374 (434)
Q Consensus 302 ~~~~v~~~~~~p~~---~il~~~~~~~~I~hg---G-~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~ 374 (434)
...++.+.+++++. .++..+++ +|... | ..++.||+++|+|+|+.+..+ ....+.. +.|...+.
T Consensus 260 ~~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~-~~~~~~~~-- 330 (375)
T cd03821 260 LEDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY-GCGWVVDD-- 330 (375)
T ss_pred ccceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc-CceEEeCC--
Confidence 45678888999865 44565665 66432 2 468999999999999975433 3444444 77877752
Q ss_pred cCCcccHHHHHHHHHHHhcc
Q 046033 375 INQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 375 ~~~~~~~~~l~~~v~~ll~~ 394 (434)
+.+++.++|.+++++
T Consensus 331 -----~~~~~~~~i~~l~~~ 345 (375)
T cd03821 331 -----DVDALAAALRRALEL 345 (375)
T ss_pred -----ChHHHHHHHHHHHhC
Confidence 459999999999993
No 77
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.90 E-value=1.7e-06 Score=82.80 Aligned_cols=77 Identities=18% Similarity=0.360 Sum_probs=48.6
Q ss_pred CCCcEEEecccCHHH---HhcccCcceEEecc----Cc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeeccc
Q 046033 302 NNKGMVVQGWAPQAK---ILGHGSIGGFISHC----GW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRD 373 (434)
Q Consensus 302 ~~~~v~~~~~~p~~~---il~~~~~~~~I~hg----G~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~ 373 (434)
..+++.+.+++++.. .+..+++ ++.++ |. .++.||+++|+|+|+....+- ...++. .|.....
T Consensus 246 ~~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~--~g~~~~~- 316 (363)
T cd04955 246 ADPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGD--KAIYFKV- 316 (363)
T ss_pred CCCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecC--CeeEecC-
Confidence 457898999998874 3444444 65443 22 579999999999998754421 111222 2333331
Q ss_pred ccCCcccHHHHHHHHHHHhcc
Q 046033 374 EINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 374 ~~~~~~~~~~l~~~v~~ll~~ 394 (434)
.+.+.+++.+++++
T Consensus 317 -------~~~l~~~i~~l~~~ 330 (363)
T cd04955 317 -------GDDLASLLEELEAD 330 (363)
T ss_pred -------chHHHHHHHHHHhC
Confidence 11299999999993
No 78
>PLN02275 transferase, transferring glycosyl groups
Probab=98.89 E-value=3.5e-06 Score=81.05 Aligned_cols=75 Identities=23% Similarity=0.318 Sum_probs=52.4
Q ss_pred CcEEEec-ccCHHHH---hcccCcceEEe-c-----cC-cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecc
Q 046033 304 KGMVVQG-WAPQAKI---LGHGSIGGFIS-H-----CG-WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPR 372 (434)
Q Consensus 304 ~~v~~~~-~~p~~~i---l~~~~~~~~I~-h-----gG-~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~ 372 (434)
.|+.+.. |+|..++ ++.+++ +|. + -| .+++.||+++|+|+|..... .+...++.-+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv~~g~~G~lv~- 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELVKDGKNGLLFS- 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHccCCCCeEEEC-
Confidence 4566555 7877644 666666 663 1 12 35799999999999987432 3566677777898874
Q ss_pred cccCCcccHHHHHHHHHHHh
Q 046033 373 DEINQRVRKEELARVFKQVV 392 (434)
Q Consensus 373 ~~~~~~~~~~~l~~~v~~ll 392 (434)
+++++.++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 4788999988875
No 79
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.89 E-value=3.4e-06 Score=79.53 Aligned_cols=303 Identities=15% Similarity=0.074 Sum_probs=148.9
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|+-..+..++++|.+.||+|++++............ ........ ... .........
T Consensus 13 G~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~-----~~~~~~~~------~~~--------~~~~~~~~~----- 68 (353)
T cd03811 13 GAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLP-----SNVKLIPV------RVL--------KLKSLRDLL----- 68 (353)
T ss_pred CcchhHHHHHHHHHhcCceEEEEEcCCCCccccccc-----cchhhhce------eee--------ecccccchh-----
Confidence 566778999999999999999999865443322200 00000000 000 000000111
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEcCC--CchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCccccccc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYDLF--QPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKMT 159 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 159 (434)
....+.++++..+||+|++... .......+...++|++.............
T Consensus 69 ---~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------------------------ 121 (353)
T cd03811 69 ---AILRLRRLLRKEKPDVVISHLTTTPNVLALLAARLGTKLIVWEHNSLSLELKR------------------------ 121 (353)
T ss_pred ---HHHHHHHHHHhcCCCEEEEcCccchhHHHHHHhhcCCceEEEEcCcchhhhcc------------------------
Confidence 1234557788889999998854 22333344444789998766554322100
Q ss_pred cccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcC---CceeeeCCCCCCCCCCCCCCchhhhhhhc
Q 046033 160 QFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITK---KETIPVGPLVQEPIYTDNNNDTKIMDWLS 236 (434)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vGpl~~~~~~~~~~~~~~~~~~l~ 236 (434)
. ..........+.. ++.+++.+....+ ......+ .++..+.+...... .......... +.
T Consensus 122 -------~-~~~~~~~~~~~~~-~d~ii~~s~~~~~-----~~~~~~~~~~~~~~vi~~~~~~~~--~~~~~~~~~~-~~ 184 (353)
T cd03811 122 -------K-LRLLLLIRKLYRR-ADKIVAVSEGVKE-----DLLKLLGIPPDKIEVIYNPIDIEE--IRALAEEPLE-LG 184 (353)
T ss_pred -------c-hhHHHHHHhhccc-cceEEEeccchhh-----hHHHhhcCCccccEEecCCcChhh--cCcccchhhh-cC
Confidence 0 0000111222233 6777766643222 2222222 45555544332211 0000000000 11
Q ss_pred CCCCCceEEEEecCcccC-CHHHHHHHHHHHhhC--CCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccC
Q 046033 237 RKEPSSVVYVSFGSEYFL-SKEEMNELASGLLLS--EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAP 313 (434)
Q Consensus 237 ~~~~~~vV~vs~Gs~~~~-~~~~~~~i~~~l~~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p 313 (434)
...++.+++..|+.... ..+.+...+..+... +..++++ +.+ ..... + ....++. +...++.+.++.+
T Consensus 185 -~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~-G~~-~~~~~----~-~~~~~~~-~~~~~v~~~g~~~ 255 (353)
T cd03811 185 -IPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVIL-GDG-PLREE----L-EALAKEL-GLADRVHFLGFQS 255 (353)
T ss_pred -CCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEE-cCC-ccHHH----H-HHHHHhc-CCCccEEEecccC
Confidence 12344777778876532 223333334444333 3344333 211 11000 0 0111111 1345677777766
Q ss_pred HH-HHhcccCcceEEec----cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHH---H
Q 046033 314 QA-KILGHGSIGGFISH----CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEEL---A 385 (434)
Q Consensus 314 ~~-~il~~~~~~~~I~h----gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l---~ 385 (434)
.. .++..+++ +|+- |..+++.||+++|+|+|+.... .....++..+.|...+. -+.+.+ .
T Consensus 256 ~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~~------~~~~~~~~~~ 323 (353)
T cd03811 256 NPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVPV------GDEAALAAAA 323 (353)
T ss_pred CHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEECC------CCHHHHHHHH
Confidence 54 66666665 7643 3357899999999999886443 55666777788888763 256666 4
Q ss_pred HHHHHHhc
Q 046033 386 RVFKQVVE 393 (434)
Q Consensus 386 ~~v~~ll~ 393 (434)
+++..++.
T Consensus 324 ~~i~~~~~ 331 (353)
T cd03811 324 LALLDLLL 331 (353)
T ss_pred HHHHhccC
Confidence 55555555
No 80
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.89 E-value=8.3e-07 Score=85.02 Aligned_cols=166 Identities=16% Similarity=0.197 Sum_probs=87.8
Q ss_pred ceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCH--HHHhc
Q 046033 242 SVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQ--AKILG 319 (434)
Q Consensus 242 ~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~--~~il~ 319 (434)
+.+++..|.......+.+..+++++......+-+.+.+..... +.+ +...++. +...++.+.+|.++ ..+..
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~----~~l-~~~~~~~-~l~~~v~f~G~~~~~~~~~~~ 253 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSDF----EKC-KAYSREL-GIEQRIIWHGWQSQPWEVVQQ 253 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCccH----HHH-HHHHHHc-CCCCeEEEecccCCcHHHHHH
Confidence 3566777776432234456677776654323322222211110 111 1111111 13467888888754 22211
Q ss_pred -ccCcceEEec----cCcchHHHHHHhCCcEEecc-CCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhc
Q 046033 320 -HGSIGGFISH----CGWGSTVEGIMYGVPIIAVP-MVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 320 -~~~~~~~I~h----gG~~s~~eal~~GvP~v~~P-~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
.+.++++|.. |-..++.||+++|+|+|... ..+ ....++....|..++. -+.+++.++|.++++
T Consensus 254 ~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~lv~~------~d~~~la~~i~~l~~ 323 (359)
T PRK09922 254 KIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGELYTP------GNIDEFVGKLNKVIS 323 (359)
T ss_pred HHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceEEECC------CCHHHHHHHHHHHHh
Confidence 1233447753 22579999999999999875 332 2234555556777653 389999999999999
Q ss_pred ccc---hHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q 046033 394 QEE---GQQIKRKAKELSESIKKKGDDEEINVVEKL 426 (434)
Q Consensus 394 ~~~---~~~~~~~a~~l~~~~~~~~~~~~~~~ve~l 426 (434)
+.+ ...+++++++++.... .+.+..+++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 356 (359)
T PRK09922 324 GEVKYQHDAIPNSIERFYEVLY---FKNLNNALFSK 356 (359)
T ss_pred CcccCCHHHHHHHHHHhhHHHH---HHHHHHHHHHH
Confidence 533 1223333333333211 45555555554
No 81
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.88 E-value=6.3e-06 Score=78.47 Aligned_cols=81 Identities=21% Similarity=0.298 Sum_probs=57.2
Q ss_pred CCCcEEEecccCHH---HHhcccCcceEEe----------ccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceee
Q 046033 302 NNKGMVVQGWAPQA---KILGHGSIGGFIS----------HCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGL 368 (434)
Q Consensus 302 ~~~~v~~~~~~p~~---~il~~~~~~~~I~----------hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~ 368 (434)
...++.+.+++++. .++..+++ +|. -|...++.||+++|+|+|+.+..+ ....++....|.
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~ 307 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGL 307 (355)
T ss_pred CCCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceE
Confidence 34688898999765 45555555 665 233478999999999999875432 223444444787
Q ss_pred eecccccCCcccHHHHHHHHHHHhcc
Q 046033 369 EVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
.+.. -+.+++.++|.+++++
T Consensus 308 ~~~~------~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LVPP------GDPEALADAIERLLDD 327 (355)
T ss_pred EeCC------CCHHHHHHHHHHHHhC
Confidence 7752 2789999999999984
No 82
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.86 E-value=7.8e-06 Score=78.16 Aligned_cols=81 Identities=15% Similarity=0.123 Sum_probs=55.3
Q ss_pred CCCcEEEecccC-HH---HHhcccCcceEEecc----CcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeeccc
Q 046033 302 NNKGMVVQGWAP-QA---KILGHGSIGGFISHC----GWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRD 373 (434)
Q Consensus 302 ~~~~v~~~~~~p-~~---~il~~~~~~~~I~hg----G~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~ 373 (434)
...++.+.++++ +. .++..+++ +|... ...++.||+++|+|+|+....+ ....+...+.|..+..
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~~~g~~~~~- 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHGVTGYLAKP- 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCCCceEEeCC-
Confidence 345677888888 43 45665665 77643 3579999999999999875432 2223333346666642
Q ss_pred ccCCcccHHHHHHHHHHHhcc
Q 046033 374 EINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 374 ~~~~~~~~~~l~~~v~~ll~~ 394 (434)
.+.+++.+++.+++++
T Consensus 315 -----~~~~~~~~~l~~l~~~ 330 (365)
T cd03825 315 -----GDPEDLAEGIEWLLAD 330 (365)
T ss_pred -----CCHHHHHHHHHHHHhC
Confidence 3789999999999984
No 83
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.83 E-value=2.3e-05 Score=75.49 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=53.7
Q ss_pred CcEEEecccCH-HHHhcccCcceEEec----cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCc
Q 046033 304 KGMVVQGWAPQ-AKILGHGSIGGFISH----CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQR 378 (434)
Q Consensus 304 ~~v~~~~~~p~-~~il~~~~~~~~I~h----gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~ 378 (434)
.++.+..+..+ ..++..+++ +|+- |-..++.||+++|+|+|+....+ +...++.-..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~------ 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHGVTGALVPP------ 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceEEeCC------
Confidence 34555444433 367777776 6632 33579999999999999976533 3444444456777753
Q ss_pred ccHHHHHHHHHHHhcc
Q 046033 379 VRKEELARVFKQVVEQ 394 (434)
Q Consensus 379 ~~~~~l~~~v~~ll~~ 394 (434)
-+.+++.++|.+++++
T Consensus 323 ~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 323 GDAVALARALQPYVSD 338 (374)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 3789999999999983
No 84
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.82 E-value=1.5e-06 Score=82.91 Aligned_cols=250 Identities=17% Similarity=0.159 Sum_probs=132.2
Q ss_pred HHHHHhHHHHHHHHhhcCCCEEEEc---CCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccc
Q 046033 80 EAFDAAKPAFCNVLETLKPTLVIYD---LFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQ 156 (434)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~pDlVi~d---~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 156 (434)
.....+...+.+++++.+||+|++- ..+..++.+|..+|||++-+.-...... .+
T Consensus 76 ~~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~rs~~----~~------------------ 133 (365)
T TIGR03568 76 KSMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEVTEG----AI------------------ 133 (365)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCccCCC----Cc------------------
Confidence 3344445677889999999999865 3334778999999999996553321100 00
Q ss_pred ccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHH-Hhhhc-CCceeeeCCCCCCCCC-CCCCCchhhhh
Q 046033 157 KMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHY-LSYIT-KKETIPVGPLVQEPIY-TDNNNDTKIMD 233 (434)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~vGpl~~~~~~-~~~~~~~~~~~ 233 (434)
. ........++ ++..+..+ ....+. .+... +.++..+|...-+.-. .......++.+
T Consensus 134 --e------E~~r~~i~~l-------a~l~f~~t-----~~~~~~L~~eg~~~~~i~~tG~~~iD~l~~~~~~~~~~~~~ 193 (365)
T TIGR03568 134 --D------ESIRHAITKL-------SHLHFVAT-----EEYRQRVIQMGEDPDRVFNVGSPGLDNILSLDLLSKEELEE 193 (365)
T ss_pred --h------HHHHHHHHHH-------HhhccCCC-----HHHHHHHHHcCCCCCcEEEECCcHHHHHHhhhccCHHHHHH
Confidence 0 0000111111 12222222 111111 11122 3466777765433100 00012334444
Q ss_pred hhcCCCCCceEEEEecCcc---cCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEec
Q 046033 234 WLSRKEPSSVVYVSFGSEY---FLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQG 310 (434)
Q Consensus 234 ~l~~~~~~~vV~vs~Gs~~---~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~ 310 (434)
.+.-.++++.|+|++=... ....+.+..+++++...+..+++....+...... +-+.+.+-. +..+++.+.+
T Consensus 194 ~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~----i~~~i~~~~-~~~~~v~l~~ 268 (365)
T TIGR03568 194 KLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRI----INEAIEEYV-NEHPNFRLFK 268 (365)
T ss_pred HhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchH----HHHHHHHHh-cCCCCEEEEC
Confidence 4433223468888886533 2446789999999987765555544322111000 001111101 0145787776
Q ss_pred ccCHH---HHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeee-ecccccCCcccHHHHHH
Q 046033 311 WAPQA---KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLE-VPRDEINQRVRKEELAR 386 (434)
Q Consensus 311 ~~p~~---~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~-~~~~~~~~~~~~~~l~~ 386 (434)
-++.. .++.++++ +|+-++.+. .||.+.|+|+|.+- +.+ .-+ ..|..+. +. .++++|.+
T Consensus 269 ~l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~~g~nvl~vg-------~~~~~I~~ 331 (365)
T TIGR03568 269 SLGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-LRADSVIDVD-------PDKEEIVK 331 (365)
T ss_pred CCChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-hhcCeEEEeC-------CCHHHHHH
Confidence 55554 67777776 998875555 89999999999774 211 111 2233322 33 37899999
Q ss_pred HHHHHhc
Q 046033 387 VFKQVVE 393 (434)
Q Consensus 387 ~v~~ll~ 393 (434)
++.++++
T Consensus 332 a~~~~~~ 338 (365)
T TIGR03568 332 AIEKLLD 338 (365)
T ss_pred HHHHHhC
Confidence 9999655
No 85
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.80 E-value=9.1e-06 Score=77.56 Aligned_cols=80 Identities=14% Similarity=0.068 Sum_probs=54.1
Q ss_pred CCCcEEEecccCH-HHHhcccCcceEEec----cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccC
Q 046033 302 NNKGMVVQGWAPQ-AKILGHGSIGGFISH----CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEIN 376 (434)
Q Consensus 302 ~~~~v~~~~~~p~-~~il~~~~~~~~I~h----gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~ 376 (434)
...++.+.++..+ ..++..+++ +|+- |-..+++||+++|+|+|+....+ ....++. +.|.....
T Consensus 247 ~~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~-~~~~~~~~---- 315 (358)
T cd03812 247 LEDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD-LVKFLSLD---- 315 (358)
T ss_pred CCCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc-CccEEeCC----
Confidence 3456777776444 366666665 6643 34579999999999999875543 2333444 55555532
Q ss_pred CcccHHHHHHHHHHHhcc
Q 046033 377 QRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~ 394 (434)
-++++++++|.+++++
T Consensus 316 --~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 316 --ESPEIWAEEILKLKSE 331 (358)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 2579999999999993
No 86
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.79 E-value=6.8e-06 Score=81.11 Aligned_cols=341 Identities=14% Similarity=0.130 Sum_probs=174.1
Q ss_pred CCEEEEEeCCCchhhhhhhhc---ccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCcc----ccHHHHHHH--HHHhHHH
Q 046033 18 NFHIYFCSTPINLQSMSQNLQ---EKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPR----HLIPTLIEA--FDAAKPA 88 (434)
Q Consensus 18 Gh~V~~~~~~~~~~~v~~~~~---~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~~ 88 (434)
.++|.+.++|..-+..-+... ++..++++|.-+..| .+. ..+ .+...+... .+.+.+... .....+.
T Consensus 226 ~~kIfI~AGE~SGDlhgA~Li~aLk~~~P~i~~~GvGG~-~M~--aaG-~e~l~d~~eLsVmG~~EVL~~l~~l~~~~~~ 301 (608)
T PRK01021 226 NTSCFISAGEHSGDTLGGNLLKEIKALYPDIHCFGVGGP-QMR--AEG-FHPLFNMEEFQVSGFWEVLLALFKLWYRYRK 301 (608)
T ss_pred CCeEEEEeccccHHHHHHHHHHHHHhcCCCcEEEEEccH-HHH--hCc-CcccCChHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 577888888766655443322 233468999888555 111 112 121111111 122222221 2233566
Q ss_pred HHHHHhhcCCCEEEE-c--CCCchHHHHHHHcCC--cEEEE-ecchHHHHHhhhccCCCCCCCCCcCCCCcccccccccc
Q 046033 89 FCNVLETLKPTLVIY-D--LFQPWAAEAAYQHDI--AAVAF-VTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKMTQFK 162 (434)
Q Consensus 89 ~~~~l~~~~pDlVi~-d--~~~~~~~~~A~~~gi--P~v~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 162 (434)
+.+.+++.+||+||. | -|+.-.+-.+++.|+ |++.+ +|+.|.+-
T Consensus 302 l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWAWR------------------------------ 351 (608)
T PRK01021 302 LYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWAWR------------------------------ 351 (608)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccceeeC------------------------------
Confidence 677777889998874 7 344555667778896 98865 33333221
Q ss_pred ccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcCCCCCc
Q 046033 163 HRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSRKEPSS 242 (434)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~ 242 (434)
..+...+... .|.++. ..-||.++.+ + .+-++.|||...-+.- +......+..+.+...++++
T Consensus 352 ------~~Rikki~k~----vD~ll~--IfPFE~~~y~---~-~gv~v~yVGHPL~d~i-~~~~~~~~~r~~lgl~~~~~ 414 (608)
T PRK01021 352 ------PKRKTILEKY----LDLLLL--ILPFEQNLFK---D-SPLRTVYLGHPLVETI-SSFSPNLSWKEQLHLPSDKP 414 (608)
T ss_pred ------cchHHHHHHH----hhhhee--cCccCHHHHH---h-cCCCeEEECCcHHhhc-ccCCCHHHHHHHcCCCCCCC
Confidence 1222333332 222222 2234554432 2 4678999995443311 11112334444444444567
Q ss_pred eEEEEecCcccCCHHHHHHHHHHHh--hC--CCcEEEEEecCCCCCccccccCchhHHHhhcCCC-CcEEEecccCHHHH
Q 046033 243 VVYVSFGSEYFLSKEEMNELASGLL--LS--EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNN-KGMVVQGWAPQAKI 317 (434)
Q Consensus 243 vV~vs~Gs~~~~~~~~~~~i~~~l~--~~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~v~~~~~~p~~~i 317 (434)
+|-+--||-...-...+..++++.+ .. +.++++...... ..+.+.+...+.. ..+.+..--....+
T Consensus 415 iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~---------~~~~i~~~~~~~~~~~~~ii~~~~~~~~ 485 (608)
T PRK01021 415 IVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK---------YDHLILEVLQQEGCLHSHIVPSQFRYEL 485 (608)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh---------hHHHHHHHHhhcCCCCeEEecCcchHHH
Confidence 9999999865422344555666665 32 334444322110 0011111110011 11222210012467
Q ss_pred hcccCcceEEeccCcchHHHHHHhCCcEEec-cCCCChhhHHHHHHhh-----c-----eeeeecccccC---CcccHHH
Q 046033 318 LGHGSIGGFISHCGWGSTVEGIMYGVPIIAV-PMVLDQLFNAKMVADI-----G-----VGLEVPRDEIN---QRVRKEE 383 (434)
Q Consensus 318 l~~~~~~~~I~hgG~~s~~eal~~GvP~v~~-P~~~dq~~na~~~~~~-----G-----~g~~~~~~~~~---~~~~~~~ 383 (434)
+..+++ ++.-+|- .++|++.+|+|+|++ -...=-+..++++-+. | +|..+-+ |.. ++++++.
T Consensus 486 m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvP-EllqgQ~~~tpe~ 561 (608)
T PRK01021 486 MRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFP-EFIGGKKDFQPEE 561 (608)
T ss_pred HHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcch-hhcCCcccCCHHH
Confidence 776666 6655553 478999999999987 3333345566666651 1 2222222 113 4789999
Q ss_pred HHHHHHHHhcccc-hHHHHHHHHHHHHHHHhcc--hHHHHHHH
Q 046033 384 LARVFKQVVEQEE-GQQIKRKAKELSESIKKKG--DDEEINVV 423 (434)
Q Consensus 384 l~~~v~~ll~~~~-~~~~~~~a~~l~~~~~~~~--~~~~~~~v 423 (434)
+.+++ ++|.+++ .++.++..+++.+.+.++. .+++..++
T Consensus 562 La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg~~~~~~~~~~~~~ 603 (608)
T PRK01021 562 VAAAL-DILKTSQSKEKQKDACRDLYQAMNESASTMKECLSLI 603 (608)
T ss_pred HHHHH-HHhcCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99997 7777432 3567777777777775433 44444443
No 87
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.79 E-value=1e-05 Score=79.06 Aligned_cols=79 Identities=18% Similarity=0.099 Sum_probs=53.1
Q ss_pred CCcEEEecccCHH---HHhcccCcceEEecc---Cc-chHHHHHHhCCcEEeccCCCChhhHHHHHH---hhceeeeecc
Q 046033 303 NKGMVVQGWAPQA---KILGHGSIGGFISHC---GW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVA---DIGVGLEVPR 372 (434)
Q Consensus 303 ~~~v~~~~~~p~~---~il~~~~~~~~I~hg---G~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~---~~G~g~~~~~ 372 (434)
.+++.+..++|+. .++..+++ +|+.. |+ .++.||+++|+|+|+.-..+.- ...++ .-..|....
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g~~G~l~~- 377 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGGPTGFLAS- 377 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCCCceEEeC-
Confidence 4678888888876 55665555 66422 23 4789999999999987543311 11122 234666552
Q ss_pred cccCCcccHHHHHHHHHHHhcc
Q 046033 373 DEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 373 ~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
+++++++++.+++++
T Consensus 378 -------d~~~la~ai~~ll~~ 392 (419)
T cd03806 378 -------TAEEYAEAIEKILSL 392 (419)
T ss_pred -------CHHHHHHHHHHHHhC
Confidence 799999999999984
No 88
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.79 E-value=3.8e-06 Score=81.65 Aligned_cols=79 Identities=19% Similarity=0.317 Sum_probs=55.5
Q ss_pred CCCcEEEecccCHH-HHhcccCcceEEe--c--cCc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeeccccc
Q 046033 302 NNKGMVVQGWAPQA-KILGHGSIGGFIS--H--CGW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEI 375 (434)
Q Consensus 302 ~~~~v~~~~~~p~~-~il~~~~~~~~I~--h--gG~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~ 375 (434)
...++.+.+++++. ..+..+++ +|. + .|. +.+.||+++|+|+|+.+...+.. .+..|.|..+.
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~---- 346 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA---- 346 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC----
Confidence 34678888888864 55666666 662 2 354 46999999999999987543321 12236676664
Q ss_pred CCcccHHHHHHHHHHHhcc
Q 046033 376 NQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 376 ~~~~~~~~l~~~v~~ll~~ 394 (434)
-+++++.++|.+++++
T Consensus 347 ---~~~~~la~ai~~ll~~ 362 (397)
T TIGR03087 347 ---ADPADFAAAILALLAN 362 (397)
T ss_pred ---CCHHHHHHHHHHHHcC
Confidence 3799999999999993
No 89
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.78 E-value=2.7e-06 Score=81.14 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=57.8
Q ss_pred CCCcEEEecccCHH---HHhcccCcceEEec----cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccc
Q 046033 302 NNKGMVVQGWAPQA---KILGHGSIGGFISH----CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDE 374 (434)
Q Consensus 302 ~~~~v~~~~~~p~~---~il~~~~~~~~I~h----gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~ 374 (434)
...++.+.+++++. .++..+++ +|.. |...++.||+++|+|+|+....+ ....+.. .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~--~~~~~~~-- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD--AALYFDP-- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC--ceeeeCC--
Confidence 55688888999776 45565665 5532 33468999999999999865422 1111222 3444432
Q ss_pred cCCcccHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 046033 375 INQRVRKEELARVFKQVVEQEEGQQIKRKAKELS 408 (434)
Q Consensus 375 ~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~ 408 (434)
-+.+++.++|.++++ ++..+.+..+-+
T Consensus 321 ----~~~~~~~~~i~~l~~---~~~~~~~~~~~~ 347 (365)
T cd03809 321 ----LDPEALAAAIERLLE---DPALREELRERG 347 (365)
T ss_pred ----CCHHHHHHHHHHHhc---CHHHHHHHHHHH
Confidence 278999999999998 555444444333
No 90
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.76 E-value=3.1e-06 Score=79.88 Aligned_cols=249 Identities=16% Similarity=0.144 Sum_probs=129.1
Q ss_pred hHHHHHHHHhhcCCCEEE-Ec--CCCchHHHHHHHcCCc--EEE-EecchHHHHHhhhccCCCCCCCCCcCCCCcccccc
Q 046033 85 AKPAFCNVLETLKPTLVI-YD--LFQPWAAEAAYQHDIA--AVA-FVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKM 158 (434)
Q Consensus 85 ~~~~~~~~l~~~~pDlVi-~d--~~~~~~~~~A~~~giP--~v~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 158 (434)
....+.+.+++.+||+|| .| -|+.--+-.+++.|+| ++. ++|+.|.|-
T Consensus 70 ~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvWAWr-------------------------- 123 (373)
T PF02684_consen 70 LFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWAWR-------------------------- 123 (373)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCceeeeC--------------------------
Confidence 356677788889999886 77 3444555666678888 444 455544221
Q ss_pred ccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCC-CCCCCCCCCCCchhhhhhhcC
Q 046033 159 TQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETIPVGPL-VQEPIYTDNNNDTKIMDWLSR 237 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl-~~~~~~~~~~~~~~~~~~l~~ 237 (434)
..+...+... .|.++. ..-||.++. . ..+-++.|||.. ..... ....+....+.+ -
T Consensus 124 ----------~~R~~~i~~~----~D~ll~--ifPFE~~~y---~-~~g~~~~~VGHPl~d~~~--~~~~~~~~~~~~-l 180 (373)
T PF02684_consen 124 ----------PGRAKKIKKY----VDHLLV--IFPFEPEFY---K-KHGVPVTYVGHPLLDEVK--PEPDRAEAREKL-L 180 (373)
T ss_pred ----------ccHHHHHHHH----HhheeE--CCcccHHHH---h-ccCCCeEEECCcchhhhc--cCCCHHHHHHhc-C
Confidence 1222333332 232222 223445443 2 245689999944 43321 111233444444 3
Q ss_pred CCCCceEEEEecCcccCCHHHHHHHHHHHhh---C--CCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEec-c
Q 046033 238 KEPSSVVYVSFGSEYFLSKEEMNELASGLLL---S--EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQG-W 311 (434)
Q Consensus 238 ~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~---~--~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~-~ 311 (434)
.+++++|.+--||-...-...+..++++.+. . +.++++.+... .. .+.+.+.......++.+.. .
T Consensus 181 ~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~--~~-------~~~i~~~~~~~~~~~~~~~~~ 251 (373)
T PF02684_consen 181 DPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPE--VH-------EELIEEILAEYPPDVSIVIIE 251 (373)
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCH--HH-------HHHHHHHHHhhCCCCeEEEcC
Confidence 3456799999998653222334444555432 2 33444443221 10 0001000000222222221 1
Q ss_pred cCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEec-cCCCChhhHHHHHHhhc-e-------eeeecccccCCcccHH
Q 046033 312 APQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAV-PMVLDQLFNAKMVADIG-V-------GLEVPRDEINQRVRKE 382 (434)
Q Consensus 312 ~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~-P~~~dq~~na~~~~~~G-~-------g~~~~~~~~~~~~~~~ 382 (434)
-...++|..+++ ++.-+| ..++|+..+|+|+|++ -...=.++.|+++.+.. + |..+-++=..+.++++
T Consensus 252 ~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~ 328 (373)
T PF02684_consen 252 GESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPE 328 (373)
T ss_pred CchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHH
Confidence 233466776665 444444 4589999999999988 33334566677665542 1 1111111113568999
Q ss_pred HHHHHHHHHhcc
Q 046033 383 ELARVFKQVVEQ 394 (434)
Q Consensus 383 ~l~~~v~~ll~~ 394 (434)
.+..++.++|.|
T Consensus 329 ~i~~~~~~ll~~ 340 (373)
T PF02684_consen 329 NIAAELLELLEN 340 (373)
T ss_pred HHHHHHHHHhcC
Confidence 999999999994
No 91
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.73 E-value=3.3e-05 Score=74.71 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=53.2
Q ss_pred cEEE-ecccCHH---HHhcccCcceEEec----cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccC
Q 046033 305 GMVV-QGWAPQA---KILGHGSIGGFISH----CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEIN 376 (434)
Q Consensus 305 ~v~~-~~~~p~~---~il~~~~~~~~I~h----gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~ 376 (434)
++.. ..+++.. .++..+++ +|+- |...++.||+++|+|+|+.... .....++..+.|..++.++..
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~ 334 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDGETGFLVPPDNSD 334 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCCCceEEcCCCCCc
Confidence 3543 3567665 45666665 7753 2235779999999999987543 355556666678887632100
Q ss_pred CcccHHHHHHHHHHHhcc
Q 046033 377 QRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~ 394 (434)
..-..+++.++|.+++++
T Consensus 335 ~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 335 ADGFQAELAKAINILLAD 352 (388)
T ss_pred ccchHHHHHHHHHHHHhC
Confidence 011128999999999983
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.65 E-value=6.5e-05 Score=77.02 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=63.9
Q ss_pred CCCcEEEecccCHH-HHhcccCcceEEe---ccC-cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccC
Q 046033 302 NNKGMVVQGWAPQA-KILGHGSIGGFIS---HCG-WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEIN 376 (434)
Q Consensus 302 ~~~~v~~~~~~p~~-~il~~~~~~~~I~---hgG-~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~ 376 (434)
..+++.+.+|.++. .++..+++ +|. +.| .+++.||+++|+|+|..... .....++.-..|+.++.
T Consensus 572 L~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg~~GlLv~~---- 641 (694)
T PRK15179 572 MGERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEGVTGLTLPA---- 641 (694)
T ss_pred CCCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCCCCEEEeCC----
Confidence 34678888887764 56666666 664 455 47899999999999997643 23444555557888863
Q ss_pred CcccHHHHHHHHHHHhccc-chHHHHHHHHHHH
Q 046033 377 QRVRKEELARVFKQVVEQE-EGQQIKRKAKELS 408 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~~-~~~~~~~~a~~l~ 408 (434)
++.+++++.+++.+++.+- .++.+++++++..
T Consensus 642 ~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a 674 (694)
T PRK15179 642 DTVTAPDVAEALARIHDMCAADPGIARKAADWA 674 (694)
T ss_pred CCCChHHHHHHHHHHHhChhccHHHHHHHHHHH
Confidence 4456667777777766521 1566777666554
No 93
>PLN02949 transferase, transferring glycosyl groups
Probab=98.64 E-value=6.1e-05 Score=74.12 Aligned_cols=110 Identities=16% Similarity=0.198 Sum_probs=66.8
Q ss_pred CCcEEEecccCHH---HHhcccCcceEEe---ccCcc-hHHHHHHhCCcEEeccCCC---ChhhHHHHHHhhc-eeeeec
Q 046033 303 NKGMVVQGWAPQA---KILGHGSIGGFIS---HCGWG-STVEGIMYGVPIIAVPMVL---DQLFNAKMVADIG-VGLEVP 371 (434)
Q Consensus 303 ~~~v~~~~~~p~~---~il~~~~~~~~I~---hgG~~-s~~eal~~GvP~v~~P~~~---dq~~na~~~~~~G-~g~~~~ 371 (434)
.+++.+..++++. .++..+++ +|+ +-|+| ++.||+++|+|+|+....+ |.-... ..| .|....
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~----~~g~tG~l~~ 407 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE----DGQQTGFLAT 407 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC----CCCcccccCC
Confidence 5678888888766 45565555 763 23444 7999999999999986543 111100 002 343332
Q ss_pred ccccCCcccHHHHHHHHHHHhccc-c-hHHHHHHHHHHHHHHHhcc-hHHHHHHHHHH
Q 046033 372 RDEINQRVRKEELARVFKQVVEQE-E-GQQIKRKAKELSESIKKKG-DDEEINVVEKL 426 (434)
Q Consensus 372 ~~~~~~~~~~~~l~~~v~~ll~~~-~-~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l 426 (434)
++++++++|.++++++ + ..++.+++++-++++.... .+...+.++.+
T Consensus 408 --------~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~~i~~l 457 (463)
T PLN02949 408 --------TVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKDAIRPI 457 (463)
T ss_pred --------CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 7899999999999842 1 2356677776655543333 44444444444
No 94
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.62 E-value=3.6e-05 Score=72.69 Aligned_cols=128 Identities=14% Similarity=0.079 Sum_probs=75.1
Q ss_pred eEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHH---HHhc
Q 046033 243 VVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQA---KILG 319 (434)
Q Consensus 243 vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~---~il~ 319 (434)
.+++..|... ..+....+++++++.+.++++.-...... .+ .....+......++.+.+++++. .+++
T Consensus 172 ~~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~~------~~-~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~ 242 (335)
T cd03802 172 DYLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDPD------YF-YREIAPELLDGPDIEYLGEVGGAEKAELLG 242 (335)
T ss_pred CEEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCHH------HH-HHHHHHhcccCCcEEEeCCCCHHHHHHHHH
Confidence 3445556653 23445567777777777766553221100 00 00111110014688898999886 4466
Q ss_pred ccCcceEEe----ccCc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhc
Q 046033 320 HGSIGGFIS----HCGW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 320 ~~~~~~~I~----hgG~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
.+++ +|. +-|+ .++.||+++|+|+|.....+ +...++.-..|..++ ..+++.+++.++++
T Consensus 243 ~~d~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~~~g~l~~--------~~~~l~~~l~~l~~ 307 (335)
T cd03802 243 NARA--LLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDGVTGFLVD--------SVEELAAAVARADR 307 (335)
T ss_pred hCcE--EEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCCCcEEEeC--------CHHHHHHHHHHHhc
Confidence 6665 553 2343 58999999999999876532 223333334677764 28999999999876
No 95
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.61 E-value=6.5e-05 Score=72.33 Aligned_cols=79 Identities=18% Similarity=0.190 Sum_probs=51.5
Q ss_pred CCCcEEEeccc--CHH---HHhcccCcceEEecc---C-cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecc
Q 046033 302 NNKGMVVQGWA--PQA---KILGHGSIGGFISHC---G-WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPR 372 (434)
Q Consensus 302 ~~~~v~~~~~~--p~~---~il~~~~~~~~I~hg---G-~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~ 372 (434)
...++.+..+. +.. .+++.+++ ++..+ | ..++.||+++|+|+|+....+ ....++.-..|..++
T Consensus 250 ~~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~~~~- 322 (372)
T cd03792 250 GDPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGFLVD- 322 (372)
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceEEeC-
Confidence 34567666665 333 45565555 77543 2 349999999999999876433 223344445676654
Q ss_pred cccCCcccHHHHHHHHHHHhcc
Q 046033 373 DEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 373 ~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
+.+.+..+|.+++++
T Consensus 323 -------~~~~~a~~i~~ll~~ 337 (372)
T cd03792 323 -------TVEEAAVRILYLLRD 337 (372)
T ss_pred -------CcHHHHHHHHHHHcC
Confidence 456788899999983
No 96
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.60 E-value=0.00013 Score=76.96 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=60.7
Q ss_pred CCcEEEecccCHHH---HhcccC--cceEEec---cCc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeeccc
Q 046033 303 NKGMVVQGWAPQAK---ILGHGS--IGGFISH---CGW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRD 373 (434)
Q Consensus 303 ~~~v~~~~~~p~~~---il~~~~--~~~~I~h---gG~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~ 373 (434)
..+|.+..++++.. ++..++ .++||+- =|+ .++.||+++|+|+|.-...+ ....++.-..|+.+++
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGlLVdP- 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGLLVDP- 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEEEECC-
Confidence 45677777877764 344332 2347754 343 58999999999999986543 2223333346777753
Q ss_pred ccCCcccHHHHHHHHHHHhcccc-hHHHHHHHHHHH
Q 046033 374 EINQRVRKEELARVFKQVVEQEE-GQQIKRKAKELS 408 (434)
Q Consensus 374 ~~~~~~~~~~l~~~v~~ll~~~~-~~~~~~~a~~l~ 408 (434)
-+++.++++|.+++++++ ..++.+++++..
T Consensus 622 -----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v 652 (1050)
T TIGR02468 622 -----HDQQAIADALLKLVADKQLWAECRQNGLKNI 652 (1050)
T ss_pred -----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 378999999999999422 234555555443
No 97
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.57 E-value=1.4e-06 Score=82.43 Aligned_cols=252 Identities=16% Similarity=0.155 Sum_probs=123.4
Q ss_pred HHHHHhHHHHHHHHhhcCCCEEEE--cC-CCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccc
Q 046033 80 EAFDAAKPAFCNVLETLKPTLVIY--DL-FQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQ 156 (434)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~pDlVi~--d~-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 156 (434)
.....+...+.+++...+||+||. |. -+.+++.+|..++||++-+....-....
T Consensus 50 ~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaGlRs~d~----------------------- 106 (346)
T PF02350_consen 50 KSTGLAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAGLRSGDR----------------------- 106 (346)
T ss_dssp HHHHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-----S-T-----------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCCCCcccc-----------------------
Confidence 344445677888999999998874 43 3356789999999997766544211110
Q ss_pred ccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhh-hc-CCceeeeCCCCCCCCCC-CCCCchhh--
Q 046033 157 KMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSY-IT-KKETIPVGPLVQEPIYT-DNNNDTKI-- 231 (434)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~vGpl~~~~~~~-~~~~~~~~-- 231 (434)
..+.+ .+.......+-++..+..+ ....+.+.. .. +.+++.+|.+.-+.-.. .....+..
T Consensus 107 ---------~~g~~-de~~R~~i~~la~lhf~~t-----~~~~~~L~~~G~~~~rI~~vG~~~~D~l~~~~~~~~~~~~~ 171 (346)
T PF02350_consen 107 ---------TEGMP-DEINRHAIDKLAHLHFAPT-----EEARERLLQEGEPPERIFVVGNPGIDALLQNKEEIEEKYKN 171 (346)
T ss_dssp ---------TSSTT-HHHHHHHHHHH-SEEEESS-----HHHHHHHHHTT--GGGEEE---HHHHHHHHHHHTTCC-HHH
T ss_pred ---------CCCCc-hhhhhhhhhhhhhhhccCC-----HHHHHHHHhcCCCCCeEEEEChHHHHHHHHhHHHHhhhhhh
Confidence 00000 0111111111155666666 222222222 22 35788898775431000 00011111
Q ss_pred hhhhcCCCCCceEEEEecCcccCC-HH---HHHHHHHHHhhC-CCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcE
Q 046033 232 MDWLSRKEPSSVVYVSFGSEYFLS-KE---EMNELASGLLLS-EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGM 306 (434)
Q Consensus 232 ~~~l~~~~~~~vV~vs~Gs~~~~~-~~---~~~~i~~~l~~~-~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v 306 (434)
..++.. .+++.++|++=...... ++ .+..+++++... +..+||........ . ..+.++.. .-+++
T Consensus 172 ~~i~~~-~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~----~----~~i~~~l~-~~~~v 241 (346)
T PF02350_consen 172 SGILQD-APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRG----S----DIIIEKLK-KYDNV 241 (346)
T ss_dssp HHHHHC-TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHH----H----HHHHHHHT-T-TTE
T ss_pred HHHHhc-cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchH----H----HHHHHHhc-ccCCE
Confidence 122222 45679999985444444 33 344455555554 55677775422111 0 11222221 22478
Q ss_pred EEecccCHH---HHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHH
Q 046033 307 VVQGWAPQA---KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEE 383 (434)
Q Consensus 307 ~~~~~~p~~---~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~ 383 (434)
.+.+-+++. .+|.++++ +|+.+| |-.-||.+.|+|+|.+=..++.+.- + ..|..+.+. .+.++
T Consensus 242 ~~~~~l~~~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe~---r-~~~~nvlv~-------~~~~~ 307 (346)
T PF02350_consen 242 RLIEPLGYEEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQEG---R-ERGSNVLVG-------TDPEA 307 (346)
T ss_dssp EEE----HHHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-HHH---H-HTTSEEEET-------SSHHH
T ss_pred EEECCCCHHHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCHHH---H-hhcceEEeC-------CCHHH
Confidence 877666554 77787777 999999 5555999999999999433333221 1 124444443 48999
Q ss_pred HHHHHHHHhc
Q 046033 384 LARVFKQVVE 393 (434)
Q Consensus 384 l~~~v~~ll~ 393 (434)
+.+++.+++.
T Consensus 308 I~~ai~~~l~ 317 (346)
T PF02350_consen 308 IIQAIEKALS 317 (346)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999998
No 98
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.51 E-value=0.00021 Score=69.54 Aligned_cols=93 Identities=17% Similarity=0.309 Sum_probs=62.4
Q ss_pred CCcEEEecccCHH---HHhcccCcceEEec---------cCc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeee
Q 046033 303 NKGMVVQGWAPQA---KILGHGSIGGFISH---------CGW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLE 369 (434)
Q Consensus 303 ~~~v~~~~~~p~~---~il~~~~~~~~I~h---------gG~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~ 369 (434)
.+++.+.+|+++. .++..+++ +|.- -|. .++.||+++|+|+|+....+ ....++.-..|..
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~l 351 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGWL 351 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceEE
Confidence 4678888999886 45555555 7742 244 57899999999999875432 3334444457777
Q ss_pred ecccccCCcccHHHHHHHHHHHhc-ccc-hHHHHHHHHHH
Q 046033 370 VPRDEINQRVRKEELARVFKQVVE-QEE-GQQIKRKAKEL 407 (434)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~v~~ll~-~~~-~~~~~~~a~~l 407 (434)
++. -+++++.++|.++++ +.+ ..++.+++++.
T Consensus 352 v~~------~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~ 385 (406)
T PRK15427 352 VPE------NDAQALAQRLAAFSQLDTDELAPVVKRAREK 385 (406)
T ss_pred eCC------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 753 379999999999998 522 23444454443
No 99
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.50 E-value=9.7e-05 Score=73.65 Aligned_cols=83 Identities=13% Similarity=0.113 Sum_probs=50.1
Q ss_pred CCcEEEecccCHH---HHhcccCcceEEecc---Cc-chHHHHHHhCCcEEeccCCC--ChhhHHHHHHhhceeeeeccc
Q 046033 303 NKGMVVQGWAPQA---KILGHGSIGGFISHC---GW-GSTVEGIMYGVPIIAVPMVL--DQLFNAKMVADIGVGLEVPRD 373 (434)
Q Consensus 303 ~~~v~~~~~~p~~---~il~~~~~~~~I~hg---G~-~s~~eal~~GvP~v~~P~~~--dq~~na~~~~~~G~g~~~~~~ 373 (434)
..++.+....+.. .++..+++ ++... |+ .+.+||+++|+|+|+....+ |.-.+.......|.|..+..
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~- 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEG- 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCC-
Confidence 3566543333333 34555554 77432 33 47789999999999775432 22211111113457888863
Q ss_pred ccCCcccHHHHHHHHHHHhc
Q 046033 374 EINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 374 ~~~~~~~~~~l~~~v~~ll~ 393 (434)
-+++++.+++.++++
T Consensus 427 -----~~~~~l~~~i~~~l~ 441 (476)
T cd03791 427 -----YNADALLAALRRALA 441 (476)
T ss_pred -----CCHHHHHHHHHHHHH
Confidence 368999999999886
No 100
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.47 E-value=0.00057 Score=65.93 Aligned_cols=81 Identities=11% Similarity=0.184 Sum_probs=56.4
Q ss_pred CCcEEEecccCHH---HHhcccCcceEEec----cCc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccc
Q 046033 303 NKGMVVQGWAPQA---KILGHGSIGGFISH----CGW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDE 374 (434)
Q Consensus 303 ~~~v~~~~~~p~~---~il~~~~~~~~I~h----gG~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~ 374 (434)
..++.+.+++++. .+++.+++ +|.. .|+ .+++||+++|+|+|+....+ +...++.-..|..+.
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~~~G~~l~--- 326 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEGITGYHLA--- 326 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccCCceEEEe---
Confidence 4567788888865 44666666 7753 333 57789999999999976532 334455555676542
Q ss_pred cCCcccHHHHHHHHHHHhcc
Q 046033 375 INQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 375 ~~~~~~~~~l~~~v~~ll~~ 394 (434)
...+++++.++|.+++++
T Consensus 327 --~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 327 --EPMTSDSIISDINRTLAD 344 (380)
T ss_pred --CCCCHHHHHHHHHHHHcC
Confidence 124799999999999994
No 101
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.46 E-value=0.001 Score=64.12 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=62.1
Q ss_pred CCCcEEEecccCHHH---HhcccCcceEEe--------ccC-cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeee
Q 046033 302 NNKGMVVQGWAPQAK---ILGHGSIGGFIS--------HCG-WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLE 369 (434)
Q Consensus 302 ~~~~v~~~~~~p~~~---il~~~~~~~~I~--------hgG-~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~ 369 (434)
..+|+.+.+++|+.. .+.++++ +|. .++ ...+.|++++|+|+|..+. ....+..+.+..
T Consensus 252 ~~~nV~~~G~~~~~~l~~~l~~~Dv--~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~~~~~~ 322 (373)
T cd04950 252 RLPNVHYLGPKPYKELPAYLAGFDV--AILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYEDEVVL 322 (373)
T ss_pred cCCCEEEeCCCCHHHHHHHHHhCCE--EecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhcCcEEE
Confidence 346899999998764 4555665 542 223 3569999999999998753 122233332333
Q ss_pred ecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHH
Q 046033 370 VPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKL 426 (434)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l 426 (434)
.. -+++++.++|.+++.++....++. ++ +..++.. ...+.++.+.|
T Consensus 323 ~~-------~d~~~~~~ai~~~l~~~~~~~~~~-~~---~~~~~~sW~~~a~~~~~~l 369 (373)
T cd04950 323 IA-------DDPEEFVAAIEKALLEDGPARERR-RL---RLAAQNSWDARAAEMLEAL 369 (373)
T ss_pred eC-------CCHHHHHHHHHHHHhcCCchHHHH-HH---HHHHHCCHHHHHHHHHHHH
Confidence 32 279999999999876422222222 11 2344455 55555555444
No 102
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.46 E-value=1.2e-06 Score=69.02 Aligned_cols=119 Identities=23% Similarity=0.212 Sum_probs=77.6
Q ss_pred ceEEEEecCcccCC---HHHHHHHHHHHhhCCC-cEEEEEecCCCCCccccccCchhHHHhhcCCCCcE--EEecccCH-
Q 046033 242 SVVYVSFGSEYFLS---KEEMNELASGLLLSEV-SFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGM--VVQGWAPQ- 314 (434)
Q Consensus 242 ~vV~vs~Gs~~~~~---~~~~~~i~~~l~~~~~-~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v--~~~~~~p~- 314 (434)
..||||-||....+ --.-.+.++.+.+.|. +.|+..+.+..- .++....-. ...++ ...+|-|.
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~--k~~gl~id~y~f~psl 74 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIR--KNGGLTIDGYDFSPSL 74 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhc--ccCCeEEEEEecCccH
Confidence 48999999976311 1112345666777775 566776654211 121111111 12233 34466676
Q ss_pred HHHhcccCcceEEeccCcchHHHHHHhCCcEEeccC----CCChhhHHHHHHhhceeeeec
Q 046033 315 AKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPM----VLDQLFNAKMVADIGVGLEVP 371 (434)
Q Consensus 315 ~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~----~~dq~~na~~~~~~G~g~~~~ 371 (434)
......+++ ||.|+|+||++|.+..|+|.|+++. -..|-.-|..+++.|-=....
T Consensus 75 ~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ 133 (170)
T KOG3349|consen 75 TEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCT 133 (170)
T ss_pred HHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEee
Confidence 344554555 9999999999999999999999985 457999999999998766554
No 103
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.45 E-value=0.00032 Score=69.82 Aligned_cols=83 Identities=14% Similarity=0.131 Sum_probs=50.6
Q ss_pred CCcEEEecccCHH---HHhcccCcceEEecc---Ccc-hHHHHHHhCCcEEeccCCC--ChhhHHHHHHhhceeeeeccc
Q 046033 303 NKGMVVQGWAPQA---KILGHGSIGGFISHC---GWG-STVEGIMYGVPIIAVPMVL--DQLFNAKMVADIGVGLEVPRD 373 (434)
Q Consensus 303 ~~~v~~~~~~p~~---~il~~~~~~~~I~hg---G~~-s~~eal~~GvP~v~~P~~~--dq~~na~~~~~~G~g~~~~~~ 373 (434)
..++.+....+.. .+++.+++ +|.-. |+| +.+||+++|+|.|+....+ |.-.+...-...+.|..+..
T Consensus 345 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~- 421 (473)
T TIGR02095 345 PGNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEE- 421 (473)
T ss_pred CCcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCC-
Confidence 3456554444443 35565555 77543 444 7889999999999875432 21111100012267877753
Q ss_pred ccCCcccHHHHHHHHHHHhc
Q 046033 374 EINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 374 ~~~~~~~~~~l~~~v~~ll~ 393 (434)
-+++++.++|.+++.
T Consensus 422 -----~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 422 -----YDPGALLAALSRALR 436 (473)
T ss_pred -----CCHHHHHHHHHHHHH
Confidence 378999999999886
No 104
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.41 E-value=0.00046 Score=67.29 Aligned_cols=72 Identities=8% Similarity=0.118 Sum_probs=50.0
Q ss_pred EecccCHHHHhcccCcceEEecc----CcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHH
Q 046033 308 VQGWAPQAKILGHGSIGGFISHC----GWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEE 383 (434)
Q Consensus 308 ~~~~~p~~~il~~~~~~~~I~hg----G~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~ 383 (434)
+..+.....++..+++ ||.-+ -..++.||+++|+|+|..-..+. ..+..-+-|.... +.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~~-----~~v~~~~ng~~~~--------~~~~ 352 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPSN-----EFFKQFPNCRTYD--------DGKG 352 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCCc-----ceeecCCceEecC--------CHHH
Confidence 4456666677776665 88663 34689999999999999864431 3333334454443 6889
Q ss_pred HHHHHHHHhcc
Q 046033 384 LARVFKQVVEQ 394 (434)
Q Consensus 384 l~~~v~~ll~~ 394 (434)
+.+++.++|.+
T Consensus 353 ~a~ai~~~l~~ 363 (462)
T PLN02846 353 FVRATLKALAE 363 (462)
T ss_pred HHHHHHHHHcc
Confidence 99999999984
No 105
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.41 E-value=5.6e-05 Score=72.07 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=79.1
Q ss_pred EEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHH---HHhcc
Q 046033 244 VYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQA---KILGH 320 (434)
Q Consensus 244 V~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~---~il~~ 320 (434)
.++..|.... .+.+..++++++..+.+++++..+. . .+.+.+ . ..+++.+.+++++. .++..
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~--~--------~~~l~~-~--~~~~V~~~g~~~~~~~~~~~~~ 261 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP--E--------LDRLRA-K--AGPNVTFLGRVSDEELRDLYAR 261 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh--h--------HHHHHh-h--cCCCEEEecCCCHHHHHHHHHh
Confidence 3455666542 3446667777777776655553221 1 011111 1 56789999999985 45666
Q ss_pred cCcceEEe--ccCc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 321 GSIGGFIS--HCGW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 321 ~~~~~~I~--hgG~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
+++ +|. .-|+ .++.||+++|+|+|.....+ ....++..+.|..++. -++++++++|..++++
T Consensus 262 ad~--~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~~~------~~~~~la~~i~~l~~~ 326 (351)
T cd03804 262 ARA--FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGILFEE------QTVESLAAAVERFEKN 326 (351)
T ss_pred CCE--EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEEeCC------CCHHHHHHHHHHHHhC
Confidence 666 663 3344 46789999999999986533 2233444467877753 2688999999999984
No 106
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.34 E-value=0.0002 Score=66.42 Aligned_cols=208 Identities=14% Similarity=0.150 Sum_probs=109.6
Q ss_pred CCceeeeCCCCCCCCCCCCCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhh-----CCCcEEEEEecCC
Q 046033 207 KKETIPVGPLVQEPIYTDNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLL-----SEVSFIWVVRFHS 281 (434)
Q Consensus 207 ~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~-----~~~~~i~~~~~~~ 281 (434)
+-..+|||....+.. +....++...+-+....+++++.+--||-.+.-...+..+.++..+ .+.++++-+....
T Consensus 155 g~~~~yVGHpl~d~i-~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~ 233 (381)
T COG0763 155 GLPCTYVGHPLADEI-PLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK 233 (381)
T ss_pred CCCeEEeCChhhhhc-cccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH
Confidence 334899995544322 1222334455555555567799999999654222223333344332 3466766654321
Q ss_pred CCCccccccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEecc-CCCChhhHHHH
Q 046033 282 EGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVP-MVLDQLFNAKM 360 (434)
Q Consensus 282 ~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P-~~~dq~~na~~ 360 (434)
.+ ..-....... ....+..+.+--. ...+..+++ .+.-+|- -++|+..+|+|||+.= ...=-++.|++
T Consensus 234 ~~------~~~~~~~~~~-~~~~~~~~~~~~~-~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~ 302 (381)
T COG0763 234 YR------RIIEEALKWE-VAGLSLILIDGEK-RKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKR 302 (381)
T ss_pred HH------HHHHHHhhcc-ccCceEEecCchH-HHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHH
Confidence 10 0111111000 0001222211111 245665555 5544443 4789999999998872 22223444554
Q ss_pred HHhhc--------eeeeecccccCCcccHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHhcc-hHHHHHHHHHH
Q 046033 361 VADIG--------VGLEVPRDEINQRVRKEELARVFKQVVEQEE-GQQIKRKAKELSESIKKKG-DDEEINVVEKL 426 (434)
Q Consensus 361 ~~~~G--------~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~-~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l 426 (434)
.-+.. +|..+-++=..+.++++.|.+++..++.++. ..++.+...+|.+.++..+ .+.+++++-++
T Consensus 303 lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~~ 378 (381)
T COG0763 303 LVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLREDPASEIAAQAVLEL 378 (381)
T ss_pred hccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 44432 1211111111345889999999999999642 2578888899999988875 55555555443
No 107
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.32 E-value=0.00091 Score=66.42 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=44.6
Q ss_pred HHhcccCcceEEec---cCcc-hHHHHHHhCCcEEeccCCC--ChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHH
Q 046033 316 KILGHGSIGGFISH---CGWG-STVEGIMYGVPIIAVPMVL--DQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFK 389 (434)
Q Consensus 316 ~il~~~~~~~~I~h---gG~~-s~~eal~~GvP~v~~P~~~--dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~ 389 (434)
.+++.+++ +|.- -|+| +..||+++|+|.|+....+ |.-.+...-...+.|..++. -+++++.++|.
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~------~d~~~la~~i~ 423 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDD------FNAEDLLRALR 423 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCC------CCHHHHHHHHH
Confidence 45565555 7743 3554 8889999999998875432 21111100022367877763 37899999999
Q ss_pred HHhc
Q 046033 390 QVVE 393 (434)
Q Consensus 390 ~ll~ 393 (434)
++++
T Consensus 424 ~~l~ 427 (466)
T PRK00654 424 RALE 427 (466)
T ss_pred HHHH
Confidence 9886
No 108
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.32 E-value=0.00055 Score=64.76 Aligned_cols=109 Identities=18% Similarity=0.300 Sum_probs=77.5
Q ss_pred CCCcEEEecccCHHHHhcc--cCcceEEecc-------------CcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhce
Q 046033 302 NNKGMVVQGWAPQAKILGH--GSIGGFISHC-------------GWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGV 366 (434)
Q Consensus 302 ~~~~v~~~~~~p~~~il~~--~~~~~~I~hg-------------G~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~ 366 (434)
...|+.+.+|++...+..+ .+..++...- -.+-+.+.+++|+|+|+. ++...+..+++.++
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~~~ 280 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVENGL 280 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhCCc
Confidence 4468999899999865432 1332222211 123477889999999984 45678899999999
Q ss_pred eeeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc--hHHHHHHH
Q 046033 367 GLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG--DDEEINVV 423 (434)
Q Consensus 367 g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~--~~~~~~~v 423 (434)
|+.++ +.+++.+++.++.. ++-.+++++++++++.++++. .+++.+++
T Consensus 281 G~~v~--------~~~el~~~l~~~~~-~~~~~m~~n~~~~~~~~~~g~~~~~~~~~~~ 330 (333)
T PRK09814 281 GFVVD--------SLEELPEIIDNITE-EEYQEMVENVKKISKLLRNGYFTKKALVDAI 330 (333)
T ss_pred eEEeC--------CHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 99995 56789999988643 334679999999999999866 44444444
No 109
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=0.00026 Score=65.82 Aligned_cols=336 Identities=16% Similarity=0.175 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHhCC-CEEEEEeCCCch--hhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 5 TPYLALAKKLSQQN-FHIYFCSTPINL--QSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 5 ~p~l~lA~~L~~~G-h~V~~~~~~~~~--~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
.-+.++.++|.+.+ .+..++.+..+. +..... ++...++.| +. ..+... -...+...
T Consensus 17 iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~--------le~~~i~~p---dy-----~L~i~~----~~~tl~~~ 76 (383)
T COG0381 17 IKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQV--------LELFGIRKP---DY-----DLNIMK----PGQTLGEI 76 (383)
T ss_pred HHHhHHHHHHHhCCCCceEEEEecccccHHHHHHH--------HHHhCCCCC---Cc-----chhccc----cCCCHHHH
Confidence 44667888898886 888888888777 333221 111112111 00 111110 01223344
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEc---CCCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCcccccc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYD---LFQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPESEIQKM 158 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d---~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 158 (434)
...+...+.+++.+.+||+|+.. ..+++++++|.+.+||+.-+.....+.... +
T Consensus 77 t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~~~-----------------------~ 133 (383)
T COG0381 77 TGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGDLY-----------------------F 133 (383)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccCCCC-----------------------C
Confidence 44456778889999999998754 555677999999999998776443221110 0
Q ss_pred ccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCC-ceeeeCCCCCCCCC---CCCCCchhhhhh
Q 046033 159 TQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKK-ETIPVGPLVQEPIY---TDNNNDTKIMDW 234 (434)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vGpl~~~~~~---~~~~~~~~~~~~ 234 (434)
+.- .-+++...+ ++..+.++- .... ...+...++ ++..+|...-+.-. .....+......
T Consensus 134 PEE---------~NR~l~~~~---S~~hfapte--~ar~--nLl~EG~~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~ 197 (383)
T COG0381 134 PEE---------INRRLTSHL---SDLHFAPTE--IARK--NLLREGVPEKRIFVTGNTVIDALLNTRDRVLEDSKILAK 197 (383)
T ss_pred cHH---------HHHHHHHHh---hhhhcCChH--HHHH--HHHHcCCCccceEEeCChHHHHHHHHHhhhccchhhHHh
Confidence 000 011122211 233333331 1111 113333444 47778866433100 000111121111
Q ss_pred -hcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhC---CCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEec
Q 046033 235 -LSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLS---EVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQG 310 (434)
Q Consensus 235 -l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~---~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~ 310 (434)
++. .+++.++||+=-..... +.+..|++++.+. ...+.++...+.... + +++..+..+...++.+.+
T Consensus 198 ~~~~-~~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~~------v-~e~~~~~L~~~~~v~li~ 268 (383)
T COG0381 198 GLDD-KDKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRPR------V-RELVLKRLKNVERVKLID 268 (383)
T ss_pred hhcc-ccCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCChh------h-hHHHHHHhCCCCcEEEeC
Confidence 222 33458888864332233 5566666655431 123344443332211 0 112211222445566554
Q ss_pred ---ccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHH
Q 046033 311 ---WAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARV 387 (434)
Q Consensus 311 ---~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~ 387 (434)
|.+...++.++-+ ++|-+|. ..-||...|+|++++-...|++. ...+|.-+.+. .+.+.+.++
T Consensus 269 pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg-------~~~~~i~~~ 334 (383)
T COG0381 269 PLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVG-------TDEENILDA 334 (383)
T ss_pred CcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc----ceecCceEEeC-------ccHHHHHHH
Confidence 5566688887776 8888764 46799999999999988888887 22334444443 367999999
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHh
Q 046033 388 FKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLLQ 428 (434)
Q Consensus 388 v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~~ 428 (434)
+..+++ +++..++...... .+| -.+..++++-+..
T Consensus 335 ~~~ll~---~~~~~~~m~~~~n---pYgdg~as~rIv~~l~~ 370 (383)
T COG0381 335 ATELLE---DEEFYERMSNAKN---PYGDGNASERIVEILLN 370 (383)
T ss_pred HHHHhh---ChHHHHHHhcccC---CCcCcchHHHHHHHHHH
Confidence 999999 5555554443333 344 3345555555543
No 110
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.24 E-value=0.0017 Score=58.25 Aligned_cols=103 Identities=13% Similarity=0.207 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCC--CchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 3 HITPYLALAKKLSQQNFHIYFCSTP--INLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 3 H~~p~l~lA~~L~~~Gh~V~~~~~~--~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|+.-+..+-++|..+||+|.+-|.+ ...+.+.. .||++.++... | ...+...+..+..+
T Consensus 12 hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~-------ygf~~~~Igk~----g--------~~tl~~Kl~~~~eR 72 (346)
T COG1817 12 HVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL-------YGFPYKSIGKH----G--------GVTLKEKLLESAER 72 (346)
T ss_pred hhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH-------hCCCeEeeccc----C--------CccHHHHHHHHHHH
Confidence 6777888999999999999988865 33344555 78888887222 1 11111122333333
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchHH
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAAA 130 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~ 130 (434)
. -.+.+++.+++||+.+. ..++-+..+|.-+|+|.+.+.-+...
T Consensus 73 ~-----~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 73 V-----YKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred H-----HHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 3 36678999999999999 56788999999999999998766543
No 111
>PLN00142 sucrose synthase
Probab=98.18 E-value=0.0014 Score=67.76 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=40.2
Q ss_pred ceEEec---cCcc-hHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHh
Q 046033 324 GGFISH---CGWG-STVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVV 392 (434)
Q Consensus 324 ~~~I~h---gG~~-s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll 392 (434)
+++|+- -|+| ++.||+++|+|+|+....+ ....++.-..|..+++ -++++++++|.+++
T Consensus 668 DVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~LV~P------~D~eaLA~aI~~lL 730 (815)
T PLN00142 668 GAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGFHIDP------YHGDEAANKIADFF 730 (815)
T ss_pred CEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCC------CCHHHHHHHHHHHH
Confidence 347753 4554 8999999999998865433 4445555456888764 36788888877654
No 112
>PLN02316 synthase/transferase
Probab=98.13 E-value=0.016 Score=61.78 Aligned_cols=82 Identities=7% Similarity=0.039 Sum_probs=49.2
Q ss_pred CcEEEecccCHH---HHhcccCcceEEecc---C-cchHHHHHHhCCcEEeccCCC--ChhhHH----HHHHh---hcee
Q 046033 304 KGMVVQGWAPQA---KILGHGSIGGFISHC---G-WGSTVEGIMYGVPIIAVPMVL--DQLFNA----KMVAD---IGVG 367 (434)
Q Consensus 304 ~~v~~~~~~p~~---~il~~~~~~~~I~hg---G-~~s~~eal~~GvP~v~~P~~~--dq~~na----~~~~~---~G~g 367 (434)
.++.+....+.. .+++.+++ ++.-+ | ..+.+||+++|+|.|+....+ |.-... .+.+. .+.|
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 355554333443 35555554 88543 2 358999999999888765432 222111 01111 2467
Q ss_pred eeecccccCCcccHHHHHHHHHHHhc
Q 046033 368 LEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
..++. .+++.+..+|.+++.
T Consensus 978 flf~~------~d~~aLa~AL~raL~ 997 (1036)
T PLN02316 978 FSFDG------ADAAGVDYALNRAIS 997 (1036)
T ss_pred EEeCC------CCHHHHHHHHHHHHh
Confidence 77753 478999999999998
No 113
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.09 E-value=0.0031 Score=62.80 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=55.8
Q ss_pred CCcEEEecccCHHHHhcccCcceEEec----cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhh-----c-eeeeecc
Q 046033 303 NKGMVVQGWAPQAKILGHGSIGGFISH----CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADI-----G-VGLEVPR 372 (434)
Q Consensus 303 ~~~v~~~~~~p~~~il~~~~~~~~I~h----gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~-----G-~g~~~~~ 372 (434)
..++.+.+......+++.+++ +|.. |-..++.||+++|+|+|.-.. ......++.. | .|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC
Confidence 467877775555677776666 6643 335789999999999998533 3334444442 2 6777653
Q ss_pred cccCCcccHHHHHHHHHHHhcc
Q 046033 373 DEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 373 ~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
-+++++.++|.+++++
T Consensus 427 ------~d~~~la~ai~~ll~~ 442 (475)
T cd03813 427 ------ADPEALARAILRLLKD 442 (475)
T ss_pred ------CCHHHHHHHHHHHhcC
Confidence 3799999999999994
No 114
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.03 E-value=0.0022 Score=63.95 Aligned_cols=104 Identities=14% Similarity=0.227 Sum_probs=65.8
Q ss_pred CCcEEEecccCHHHHhcccCcceEEe---ccCc-chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCC-
Q 046033 303 NKGMVVQGWAPQAKILGHGSIGGFIS---HCGW-GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQ- 377 (434)
Q Consensus 303 ~~~v~~~~~~p~~~il~~~~~~~~I~---hgG~-~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~- 377 (434)
..++.+.++.+...++..+++ +|. .-|+ .++.||+++|+|+|+....+ .+...++.-..|..++.+.+..
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g~nG~lv~~~~~~~d 449 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDNKNGYLIPIDEEEDD 449 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCCCCEEEEeCCccccc
Confidence 456777788877788887776 774 2343 58999999999999975431 1233344444677765210001
Q ss_pred ccc-HHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Q 046033 378 RVR-KEELARVFKQVVEQEEGQQIKRKAKELSESI 411 (434)
Q Consensus 378 ~~~-~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~ 411 (434)
.-+ .+.++++|.++++++.-.++.+++++.++.+
T Consensus 450 ~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~f 484 (500)
T TIGR02918 450 EDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGF 484 (500)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhc
Confidence 112 7889999999996322345666776655543
No 115
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.02 E-value=0.0058 Score=59.59 Aligned_cols=98 Identities=21% Similarity=0.336 Sum_probs=64.6
Q ss_pred CCCcEEEecccCHHH---HhcccCcceEEeccC----cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccc
Q 046033 302 NNKGMVVQGWAPQAK---ILGHGSIGGFISHCG----WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDE 374 (434)
Q Consensus 302 ~~~~v~~~~~~p~~~---il~~~~~~~~I~hgG----~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~ 374 (434)
...++.+.+|+++.+ ++..++++++|...- ..+++||+++|+|+|.....+ ....+...+.|..+..
T Consensus 287 ~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~l~~~-- 360 (407)
T cd04946 287 ENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGLLLSK-- 360 (407)
T ss_pred CCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEEEeCC--
Confidence 345688889999764 444445555775443 468999999999999864332 4455555557877752
Q ss_pred cCCcccHHHHHHHHHHHhcccc-hHHHHHHHHHHH
Q 046033 375 INQRVRKEELARVFKQVVEQEE-GQQIKRKAKELS 408 (434)
Q Consensus 375 ~~~~~~~~~l~~~v~~ll~~~~-~~~~~~~a~~l~ 408 (434)
.-+++++.++|.+++++++ ..+++++|++..
T Consensus 361 ---~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~ 392 (407)
T cd04946 361 ---DPTPNELVSSLSKFIDNEEEYQTMREKAREKW 392 (407)
T ss_pred ---CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 2378999999999998321 233444444433
No 116
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.97 E-value=0.00021 Score=69.07 Aligned_cols=161 Identities=19% Similarity=0.295 Sum_probs=89.7
Q ss_pred CCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHHHHhc
Q 046033 240 PSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILG 319 (434)
Q Consensus 240 ~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~ 319 (434)
+..++|.+|.+....+++.+..-.+.|++.+.-.+|....+.... ..+-+.+ .+.+-....+.+.+..+...-+.
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~----~~l~~~~-~~~Gv~~~Ri~f~~~~~~~ehl~ 357 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGE----ARLRRRF-AAHGVDPDRIIFSPVAPREEHLR 357 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHH----HHHHHHH-HHTTS-GGGEEEEE---HHHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHH----HHHHHHH-HHcCCChhhEEEcCCCCHHHHHH
Confidence 345999999998888999988888888888888888876542211 1111111 11111345677777777654332
Q ss_pred -ccCcceEE---eccCcchHHHHHHhCCcEEeccC-CCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 320 -HGSIGGFI---SHCGWGSTVEGIMYGVPIIAVPM-VLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 320 -~~~~~~~I---~hgG~~s~~eal~~GvP~v~~P~-~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
+..+|.++ ..+|..|++|||++|||+|..|- ..-...-|..+..+|+.-.+- -+.++-.+.--++-+
T Consensus 358 ~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA-------~s~~eYv~~Av~La~- 429 (468)
T PF13844_consen 358 RYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIA-------DSEEEYVEIAVRLAT- 429 (468)
T ss_dssp HGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB--------SSHHHHHHHHHHHHH-
T ss_pred HhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcC-------CCHHHHHHHHHHHhC-
Confidence 23334466 56889999999999999999984 334566667778889987664 267777777677777
Q ss_pred cchHHHHHH-HHHHHHHHHhcc
Q 046033 395 EEGQQIKRK-AKELSESIKKKG 415 (434)
Q Consensus 395 ~~~~~~~~~-a~~l~~~~~~~~ 415 (434)
+.+++++ -++|++.+.+.+
T Consensus 430 --D~~~l~~lR~~Lr~~~~~Sp 449 (468)
T PF13844_consen 430 --DPERLRALRAKLRDRRSKSP 449 (468)
T ss_dssp ---HHHHHHHHHHHHHHHHHSG
T ss_pred --CHHHHHHHHHHHHHHHhhCC
Confidence 4433333 233444444433
No 117
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.96 E-value=0.0026 Score=61.11 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=62.9
Q ss_pred CCcEEEecccCHH-HHhcccCcceEE--ec--cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCC
Q 046033 303 NKGMVVQGWAPQA-KILGHGSIGGFI--SH--CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQ 377 (434)
Q Consensus 303 ~~~v~~~~~~p~~-~il~~~~~~~~I--~h--gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~ 377 (434)
..++.+.++.++. .++..+++ +| ++ |...++.||+++|+|+|+..... .....++.-..|..++.
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~--~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~lv~~----- 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQL--SLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGYLVPK----- 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhE--EEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCceEeCC-----
Confidence 4467676665553 66776666 55 33 23468999999999999874331 12334444467777753
Q ss_pred cccHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHH
Q 046033 378 RVRKEELARVFKQVVEQEE-GQQIKRKAKELSESI 411 (434)
Q Consensus 378 ~~~~~~l~~~v~~ll~~~~-~~~~~~~a~~l~~~~ 411 (434)
-+.+++.++|..++++.+ ..++.+++++.++.+
T Consensus 330 -~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 330 -GDIEALAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred -CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 379999999999999422 234555555554443
No 118
>PRK14098 glycogen synthase; Provisional
Probab=97.93 E-value=0.015 Score=57.94 Aligned_cols=81 Identities=14% Similarity=0.082 Sum_probs=51.8
Q ss_pred CCcEEEecccCHH---HHhcccCcceEEecc---Cc-chHHHHHHhCCcEEeccCCC--ChhhHHHHHHhhceeeeeccc
Q 046033 303 NKGMVVQGWAPQA---KILGHGSIGGFISHC---GW-GSTVEGIMYGVPIIAVPMVL--DQLFNAKMVADIGVGLEVPRD 373 (434)
Q Consensus 303 ~~~v~~~~~~p~~---~il~~~~~~~~I~hg---G~-~s~~eal~~GvP~v~~P~~~--dq~~na~~~~~~G~g~~~~~~ 373 (434)
+.++.+...++.. .+++.+++ ++..+ |. .+.+||+++|+|.|+....+ |...+ ..+..+.|..++.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l~~~- 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGFIFHD- 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCceeEeCC-
Confidence 4567777777764 45665555 77543 22 36789999999888775433 21110 1112367777753
Q ss_pred ccCCcccHHHHHHHHHHHhc
Q 046033 374 EINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 374 ~~~~~~~~~~l~~~v~~ll~ 393 (434)
-+++++.++|.++++
T Consensus 436 -----~d~~~la~ai~~~l~ 450 (489)
T PRK14098 436 -----YTPEALVAKLGEALA 450 (489)
T ss_pred -----CCHHHHHHHHHHHHH
Confidence 478999999998763
No 119
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00021 Score=55.49 Aligned_cols=109 Identities=22% Similarity=0.252 Sum_probs=70.5
Q ss_pred EEEEecCcccCCHHHHH--HHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEeccc--CHH-HHh
Q 046033 244 VYVSFGSEYFLSKEEMN--ELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWA--PQA-KIL 318 (434)
Q Consensus 244 V~vs~Gs~~~~~~~~~~--~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~--p~~-~il 318 (434)
+|||-||....-...+. +..+-.+....++|+..+.+... | -.+..+..|. +-. .+.
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~k--------p----------vagl~v~~F~~~~kiQsli 63 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDIK--------P----------VAGLRVYGFDKEEKIQSLI 63 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCcc--------c----------ccccEEEeechHHHHHHHh
Confidence 68999998542122211 13333334456788888754221 1 0123444444 333 333
Q ss_pred cccCcceEEeccCcchHHHHHHhCCcEEeccCCC--------ChhhHHHHHHhhceeeeecc
Q 046033 319 GHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVL--------DQLFNAKMVADIGVGLEVPR 372 (434)
Q Consensus 319 ~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~--------dq~~na~~~~~~G~g~~~~~ 372 (434)
.-++ .+|+|+|.||++.++..++|.|++|... .|...|..+.+.+.=+...+
T Consensus 64 ~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~sp 123 (161)
T COG5017 64 HDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSP 123 (161)
T ss_pred hcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcC
Confidence 4344 5999999999999999999999999643 58888999998887777753
No 120
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.87 E-value=0.019 Score=55.82 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=62.4
Q ss_pred EEEEecCcccCCHHHHHHHHHHHhhCCCcEE-EEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCH-H---HHh
Q 046033 244 VYVSFGSEYFLSKEEMNELASGLLLSEVSFI-WVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQ-A---KIL 318 (434)
Q Consensus 244 V~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~-~---~il 318 (434)
+++..|.......+.+..+++++...+.++. +.++.+... ...++....+... . .++
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~------------------~~~~v~~~g~~~~~~~l~~~y 304 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPF------------------TAGNVVNHGFETDKRKLMSAL 304 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCcc------------------cccceEEecCcCCHHHHHHHH
Confidence 3444454222223445678888876554433 333321100 1123544455422 2 344
Q ss_pred cccCcceEEecc----CcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHH
Q 046033 319 GHGSIGGFISHC----GWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFK 389 (434)
Q Consensus 319 ~~~~~~~~I~hg----G~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~ 389 (434)
..+++ +|.-. -..++.||+++|+|+|.....+ - ...+. .+.|..+++ -+++.++++++
T Consensus 305 ~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~---~Eiv~-~~~G~lv~~------~d~~~La~~~~ 366 (405)
T PRK10125 305 NQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA-A---REVLQ-KSGGKTVSE------EEVLQLAQLSK 366 (405)
T ss_pred HhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC-h---HHhEe-CCcEEEECC------CCHHHHHhccC
Confidence 44555 77533 2468999999999999997765 1 22233 246888864 26777776543
No 121
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.84 E-value=0.054 Score=56.28 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=50.5
Q ss_pred CCcEEEeccc-CH---HHHhcc-cC-cceEEecc---C-cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecc
Q 046033 303 NKGMVVQGWA-PQ---AKILGH-GS-IGGFISHC---G-WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPR 372 (434)
Q Consensus 303 ~~~v~~~~~~-p~---~~il~~-~~-~~~~I~hg---G-~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~ 372 (434)
..++.+..+. +. ..++.+ ++ .++||+-. | ..++.||+++|+|+|+-... ..+..++.-..|..+++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg~tGfLVdp 693 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDGVSGFHIDP 693 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCCCcEEEeCC
Confidence 3566665553 22 233432 22 23477432 3 35899999999999986443 34455555567888864
Q ss_pred cccCCcccHHHHHHHHHHHh
Q 046033 373 DEINQRVRKEELARVFKQVV 392 (434)
Q Consensus 373 ~~~~~~~~~~~l~~~v~~ll 392 (434)
-++++++++|.+++
T Consensus 694 ------~D~eaLA~aL~~ll 707 (784)
T TIGR02470 694 ------YHGEEAAEKIVDFF 707 (784)
T ss_pred ------CCHHHHHHHHHHHH
Confidence 36889999998876
No 122
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.81 E-value=0.0023 Score=56.27 Aligned_cols=51 Identities=16% Similarity=0.093 Sum_probs=34.9
Q ss_pred CCCcEEEecccCH-H--HHhcccCcceEEeccC----cchHHHHHHhCCcEEeccCCCC
Q 046033 302 NNKGMVVQGWAPQ-A--KILGHGSIGGFISHCG----WGSTVEGIMYGVPIIAVPMVLD 353 (434)
Q Consensus 302 ~~~~v~~~~~~p~-~--~il~~~~~~~~I~hgG----~~s~~eal~~GvP~v~~P~~~d 353 (434)
...|+.+.++++. . ..+.. .++++|+... .+++.||+++|+|+|+.+..+.
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~-~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLA-AADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhh-cCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 3457777777633 2 22222 2444887776 7899999999999999876543
No 123
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.72 E-value=0.012 Score=59.45 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=49.4
Q ss_pred cEEEecccCHH-HHhcccCcceEEecc---C-cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcc
Q 046033 305 GMVVQGWAPQA-KILGHGSIGGFISHC---G-WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRV 379 (434)
Q Consensus 305 ~v~~~~~~p~~-~il~~~~~~~~I~hg---G-~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~ 379 (434)
++.+..+.++. .+++.+++ ||.-+ | ..++.||+++|+|+|+....+... +.. |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~-g~nGll~-------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS-FPNCLTY-------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee-cCCeEec-------C
Confidence 35555666654 47776665 87532 3 468999999999999987655321 111 2222222 2
Q ss_pred cHHHHHHHHHHHhcc
Q 046033 380 RKEELARVFKQVVEQ 394 (434)
Q Consensus 380 ~~~~l~~~v~~ll~~ 394 (434)
+.+++.++|.++|.+
T Consensus 667 D~EafAeAI~~LLsd 681 (794)
T PLN02501 667 TSEDFVAKVKEALAN 681 (794)
T ss_pred CHHHHHHHHHHHHhC
Confidence 689999999999994
No 124
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.63 E-value=0.076 Score=52.83 Aligned_cols=64 Identities=22% Similarity=0.242 Sum_probs=44.4
Q ss_pred CCcEEEecccCHH-HHhcccCcceEEec---cC-cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecc
Q 046033 303 NKGMVVQGWAPQA-KILGHGSIGGFISH---CG-WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPR 372 (434)
Q Consensus 303 ~~~v~~~~~~p~~-~il~~~~~~~~I~h---gG-~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~ 372 (434)
.+++.+.++..+. .++..+++ +|.. -| .+++.||+++|+|+|..... .+...++.-..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG~nG~LVp~ 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEGVSGFILDD 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccCCcEEEECC
Confidence 4678888876543 55666665 8753 44 46999999999999987543 34455555567888764
No 125
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.47 E-value=0.0036 Score=52.79 Aligned_cols=80 Identities=24% Similarity=0.317 Sum_probs=59.2
Q ss_pred CCCcEEEecccCHH---HHhcccCcceEEec----cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccc
Q 046033 302 NNKGMVVQGWAPQA---KILGHGSIGGFISH----CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDE 374 (434)
Q Consensus 302 ~~~~v~~~~~~p~~---~il~~~~~~~~I~h----gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~ 374 (434)
...++.+..+++.. .++..+++ +|+. |...++.||+++|+|+|+. +...+...+...+.|..+..
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~~~g~~~~~-- 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDGVNGFLFDP-- 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTTTSEEEEST--
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccccceEEeCC--
Confidence 34578888888733 56666565 8866 5567999999999999975 35566667777778888863
Q ss_pred cCCcccHHHHHHHHHHHhc
Q 046033 375 INQRVRKEELARVFKQVVE 393 (434)
Q Consensus 375 ~~~~~~~~~l~~~v~~ll~ 393 (434)
.+.+++.++|.++++
T Consensus 143 ----~~~~~l~~~i~~~l~ 157 (172)
T PF00534_consen 143 ----NDIEELADAIEKLLN 157 (172)
T ss_dssp ----TSHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHC
Confidence 389999999999999
No 126
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.43 E-value=0.034 Score=52.19 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=75.6
Q ss_pred hhcCCCCCceEEEEecCccc---CCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEec
Q 046033 234 WLSRKEPSSVVYVSFGSEYF---LSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQG 310 (434)
Q Consensus 234 ~l~~~~~~~vV~vs~Gs~~~---~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~ 310 (434)
++....+++.|.+..|+... ++.+.+.++++.+.+.+..+++..+.+. + ...-+.+.+.. ++..+.+
T Consensus 172 ~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~-e-----~~~~~~i~~~~----~~~~l~g 241 (319)
T TIGR02193 172 FLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA-E-----KQRAERIAEAL----PGAVVLP 241 (319)
T ss_pred hhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH-H-----HHHHHHHHhhC----CCCeecC
Confidence 44333345577666665332 6678899999888766666555433211 0 00011122111 1111222
Q ss_pred c--cCH-HHHhcccCcceEEeccCcchHHHHHHhCCcEEec--cCCCChhhHHHHHHhhceeeeecccccCCcccHHHHH
Q 046033 311 W--APQ-AKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAV--PMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELA 385 (434)
Q Consensus 311 ~--~p~-~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~--P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~ 385 (434)
- +++ .+++.++++ +|+. -.|.+.=|.+.|+|+|.+ |....+ ..=.|-...+-..+..++++++++.
T Consensus 242 ~~sL~el~ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~p~~------~~P~~~~~~~~~~~~~~~I~~~~V~ 312 (319)
T TIGR02193 242 KMSLAEVAALLAGADA--VVGV-DTGLTHLAAALDKPTVTLYGATDPGR------TGGYGKPNVALLGESGANPTPDEVL 312 (319)
T ss_pred CCCHHHHHHHHHcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCCHhh------cccCCCCceEEccCccCCCCHHHHH
Confidence 2 222 377776665 8876 578899999999999877 332211 1001111111111125678999999
Q ss_pred HHHHHHh
Q 046033 386 RVFKQVV 392 (434)
Q Consensus 386 ~~v~~ll 392 (434)
++++++|
T Consensus 313 ~ai~~~~ 319 (319)
T TIGR02193 313 AALEELL 319 (319)
T ss_pred HHHHhhC
Confidence 9998875
No 127
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.37 E-value=0.17 Score=49.40 Aligned_cols=181 Identities=12% Similarity=0.180 Sum_probs=100.4
Q ss_pred hhhhhcCCCCCceEEEEecCcccC------C----HHHHHHHHHHHhhCCCcEEEEEecCCC---CCccccccCchhHHH
Q 046033 231 IMDWLSRKEPSSVVYVSFGSEYFL------S----KEEMNELASGLLLSEVSFIWVVRFHSE---GNFTIEEALPQGFAE 297 (434)
Q Consensus 231 ~~~~l~~~~~~~vV~vs~Gs~~~~------~----~~~~~~i~~~l~~~~~~~i~~~~~~~~---~~~~~~~~~p~~~~~ 297 (434)
+..|+.....+++|-++.-..... + .+.+..+++.+.+.|.++++..-.... ...|. ..-..+.+
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~--~~~~~l~~ 301 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDR--MVALNLRQ 301 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchH--HHHHHHHH
Confidence 344555444566888886543311 1 133445556665567776655321110 00000 01122223
Q ss_pred hhcCCCCcEE-Eec-ccCHH--HHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeee-ecc
Q 046033 298 EIQGNNKGMV-VQG-WAPQA--KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLE-VPR 372 (434)
Q Consensus 298 ~~~~~~~~v~-~~~-~~p~~--~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~-~~~ 372 (434)
.+. ...++. +.+ +-+.. .++.+++ ++|.. =.-+..-|+..|+|.+.++- | +-....++..|..-. ++
T Consensus 302 ~~~-~~~~~~vi~~~~~~~e~~~iIs~~d--l~ig~-RlHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~lg~~~~~~~- 373 (426)
T PRK10017 302 HVS-DPARYHVVMDELNDLEMGKILGACE--LTVGT-RLHSAIISMNFGTPAIAINY--E-HKSAGIMQQLGLPEMAID- 373 (426)
T ss_pred hcc-cccceeEecCCCChHHHHHHHhhCC--EEEEe-cchHHHHHHHcCCCEEEeee--h-HHHHHHHHHcCCccEEec-
Confidence 321 122222 222 32333 5666544 48833 23457778999999999976 3 444455577887755 44
Q ss_pred cccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Q 046033 373 DEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKGDDEEINVVEKL 426 (434)
Q Consensus 373 ~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~ve~l 426 (434)
.+.++.+++.+.+.+++++ .++++++.++-.+.++....+...++++++
T Consensus 374 ---~~~l~~~~Li~~v~~~~~~--r~~~~~~l~~~v~~~r~~~~~~~~~~~~~~ 422 (426)
T PRK10017 374 ---IRHLLDGSLQAMVADTLGQ--LPALNARLAEAVSRERQTGMQMVQSVLERI 422 (426)
T ss_pred ---hhhCCHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678899999999999995 366777766666666664444555555554
No 128
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.24 E-value=0.031 Score=51.91 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=40.7
Q ss_pred CHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhh---HHHHHHhhceeeeec
Q 046033 313 PQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLF---NAKMVADIGVGLEVP 371 (434)
Q Consensus 313 p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~---na~~~~~~G~g~~~~ 371 (434)
|+...|+.++. .+||---.+-++||+..|+|+.++|...-... -.+.+++.|+-....
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L~~~g~~r~~~ 281 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSLEERGAVRPFT 281 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHHHHCCCEEECC
Confidence 56688888775 45555557889999999999999987762222 334555567666654
No 129
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.21 E-value=0.17 Score=46.42 Aligned_cols=311 Identities=16% Similarity=0.109 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhHHHHHHHHhhcCCCEEEEcC-CCchHHHHHHHcCCcEEEEecchHHHHHhhhccCCCCCCCCCcCCCCc
Q 046033 75 IPTLIEAFDAAKPAFCNVLETLKPTLVIYDL-FQPWAAEAAYQHDIAAVAFVTIAAASFSFFLQNSSLKFPFPEFDLPES 153 (434)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~pDlVi~d~-~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 153 (434)
+..+......|.-.++.+++ ..||+-|-++ +.+.-...++..++|++++...|....++..-... .
T Consensus 129 fTllgQaigsmIl~~Eai~r-~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~q------------r 195 (465)
T KOG1387|consen 129 FTLLGQAIGSMILAFEAIIR-FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQ------------R 195 (465)
T ss_pred eehHHHHHHHHHHHHHHHHh-CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHh------------h
Confidence 34455666666666665555 7999998773 33344566667899999988877766653211100 0
Q ss_pred cccccccccccccCCchhHHHHHHhhhcCCcEEEEcCCchhcHHHHHHHhhhcCCcee-eeCCCCCCCCCCCCCCchhhh
Q 046033 154 EIQKMTQFKHRIVNGTENRDRFLKAIDLSCKLVLVKTSREIESKDLHYLSYITKKETI-PVGPLVQEPIYTDNNNDTKIM 232 (434)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~vGpl~~~~~~~~~~~~~~~~ 232 (434)
... .-..+..-.+++.+.++.......++.+++|+.+.-.. +...|..+.. .|=|.+. .+++.
T Consensus 196 q~s--~~l~~~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nH-----I~qiW~~~~~~iVyPPC~---------~e~lk 259 (465)
T KOG1387|consen 196 QKS--GILVWGKLAYWRLFALLYQSAGSKADIVMTNSSWTNNH-----IKQIWQSNTCSIVYPPCS---------TEDLK 259 (465)
T ss_pred hhc--chhhhHHHHHHHHHHHHHHhccccceEEEecchhhHHH-----HHHHhhccceeEEcCCCC---------HHHHH
Confidence 000 00000011234556667777766577888888654333 3344543222 1212111 22444
Q ss_pred hhhcCCCCCceEEEEecCcccCC-HHHHHHHHHHHhhCCC-----cEEEEEecCCCCCccccc--cCchhHHHhhcCCCC
Q 046033 233 DWLSRKEPSSVVYVSFGSEYFLS-KEEMNELASGLLLSEV-----SFIWVVRFHSEGNFTIEE--ALPQGFAEEIQGNNK 304 (434)
Q Consensus 233 ~~l~~~~~~~vV~vs~Gs~~~~~-~~~~~~i~~~l~~~~~-----~~i~~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~ 304 (434)
+.......+-+..+++|..-... .+.++-..-.+++.+. .+=....+...+..|... .+ +++.++ .+.+.
T Consensus 260 s~~~te~~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~L-kd~a~~-L~i~~ 337 (465)
T KOG1387|consen 260 SKFGTEGERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSL-KDLAEE-LKIPK 337 (465)
T ss_pred HHhcccCCcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHH-HHHHHh-cCCcc
Confidence 43333234557778887654322 2323332222232221 111222222222222111 11 112221 23566
Q ss_pred cEEEecccCHHHHh---cccCcceEEe-----ccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccC
Q 046033 305 GMVVQGWAPQAKIL---GHGSIGGFIS-----HCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEIN 376 (434)
Q Consensus 305 ~v~~~~~~p~~~il---~~~~~~~~I~-----hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~ 376 (434)
++.+.-.+|..++. ..+.. -|| |=|. ++.|.+++|.=.|+--..+-..+.-.-.+-.-.|...
T Consensus 338 ~v~F~~N~Py~~lv~lL~~a~i--Gvh~MwNEHFGI-sVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla------ 408 (465)
T KOG1387|consen 338 HVQFEKNVPYEKLVELLGKATI--GVHTMWNEHFGI-SVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLA------ 408 (465)
T ss_pred ceEEEecCCHHHHHHHhcccee--ehhhhhhhhcch-hHHHHHhcCceEEEeCCCCCceeeeeccCCccceeec------
Confidence 78777778887544 33322 221 2222 6899999997665543222111111100111133333
Q ss_pred CcccHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHH
Q 046033 377 QRVRKEELARVFKQVVEQ--EEGQQIKRKAKELSESIKKKG-DDEEINVVEKLL 427 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~--~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~ 427 (434)
.|.++-++++.+++.. ++...+|++|++=.+++.+.- .+.....++.++
T Consensus 409 --~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~~F~kd~~~~i~kll 460 (465)
T KOG1387|consen 409 --PTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGELKFDKDWENPICKLL 460 (465)
T ss_pred --CChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHHhHhHHHHHhh
Confidence 3778888888888863 213468888888888887755 555555555554
No 130
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.17 E-value=0.0054 Score=60.03 Aligned_cols=141 Identities=18% Similarity=0.356 Sum_probs=89.9
Q ss_pred CCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHHHH--
Q 046033 240 PSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKI-- 317 (434)
Q Consensus 240 ~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~i-- 317 (434)
+..+||.+|-.....+|+.++.-++.+++.+..++|...++...... + ....++.+=.++.+.+.+-+.-..-
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~r----f-~ty~~~~Gl~p~riifs~va~k~eHvr 831 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQR----F-RTYAEQLGLEPDRIIFSPVAAKEEHVR 831 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHH----H-HHHHHHhCCCccceeeccccchHHHHH
Confidence 35699999988888999999999999999999999999887443210 0 0111222113445555444333221
Q ss_pred ---hcccCcceEEeccCcchHHHHHHhCCcEEeccCCC-ChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhc
Q 046033 318 ---LGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVL-DQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 318 ---l~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~-dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
|.--.++...|. |..|.++.+++|||+|.+|... -...-+-.+...|+|-.+-+ +.++-.+.--++-.
T Consensus 832 r~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak-------~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 832 RGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK-------NREEYVQIAVRLAT 903 (966)
T ss_pred hhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh-------hHHHHHHHHHHhhc
Confidence 221223345565 6889999999999999999643 33444456677899986654 55554444444444
No 131
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.03 E-value=0.0079 Score=48.71 Aligned_cols=92 Identities=14% Similarity=0.152 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHhH
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAAK 86 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
...+++.|.++||+|++++.....+..... .|+.++.++.+ .. .....+ . ..
T Consensus 13 ~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~------~~i~~~~~~~~-------~k----------~~~~~~-~----~~ 64 (139)
T PF13477_consen 13 IYNLAKELKKRGYDVHIITPRNDYEKYEII------EGIKVIRLPSP-------RK----------SPLNYI-K----YF 64 (139)
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCchhhhHh------CCeEEEEecCC-------CC----------ccHHHH-H----HH
Confidence 567899999999999999996554333321 78888777222 11 011111 1 12
Q ss_pred HHHHHHHhhcCCCEEEEcCCC---chHHHHHHHcC-CcEEEEecc
Q 046033 87 PAFCNVLETLKPTLVIYDLFQ---PWAAEAAYQHD-IAAVAFVTI 127 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~---~~~~~~A~~~g-iP~v~~~~~ 127 (434)
.+.+++++.+||+|.+.... ..+..+++..| +|++.....
T Consensus 65 -~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 65 -RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred -HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecC
Confidence 66789999999999877433 23445677888 999976554
No 132
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.94 E-value=0.0023 Score=52.82 Aligned_cols=96 Identities=18% Similarity=0.177 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAA 85 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
-+..++++|.++||+|++++.......-+.. ..|++++.++.+ .. ... ......+
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~-~~~---------~~~~~~~------- 60 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEE-----EDGVRVHRLPLP---RR-PWP---------LRLLRFL------- 60 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEE-----ETTEEEEEE--S----S-SSG---------GGHCCHH-------
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccc-----cCCceEEeccCC---cc-chh---------hhhHHHH-------
Confidence 4678999999999999999976555432111 167888888555 11 000 0001111
Q ss_pred HHHHHHHH--hhcCCCEEEEcCCC-chHHHHHH-HcCCcEEEEecc
Q 046033 86 KPAFCNVL--ETLKPTLVIYDLFQ-PWAAEAAY-QHDIAAVAFVTI 127 (434)
Q Consensus 86 ~~~~~~~l--~~~~pDlVi~d~~~-~~~~~~A~-~~giP~v~~~~~ 127 (434)
..+.+++ +..+||+|.+.... ......++ ..++|+|.....
T Consensus 61 -~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 61 -RRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp -HHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred -HHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 2334555 77899999888422 22334444 789999987764
No 133
>PLN02939 transferase, transferring glycosyl groups
Probab=96.82 E-value=0.9 Score=48.24 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=51.8
Q ss_pred CCcEEEecccCHH---HHhcccCcceEEecc---C-cchHHHHHHhCCcEEeccCCC--ChhhH--HHHH-Hhhceeeee
Q 046033 303 NKGMVVQGWAPQA---KILGHGSIGGFISHC---G-WGSTVEGIMYGVPIIAVPMVL--DQLFN--AKMV-ADIGVGLEV 370 (434)
Q Consensus 303 ~~~v~~~~~~p~~---~il~~~~~~~~I~hg---G-~~s~~eal~~GvP~v~~P~~~--dq~~n--a~~~-~~~G~g~~~ 370 (434)
..+|.+..+.+.. .+++.+++ +|.-+ | ..+.+||+++|+|.|+....+ |...+ ...+ +.-+-|..+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3567776777664 46665555 88542 2 358999999999998876543 22111 1111 112457666
Q ss_pred cccccCCcccHHHHHHHHHHHhc
Q 046033 371 PRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 371 ~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
.. .+++.+..+|.+++.
T Consensus 914 ~~------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 LT------PDEQGLNSALERAFN 930 (977)
T ss_pred cC------CCHHHHHHHHHHHHH
Confidence 52 378889999988764
No 134
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=96.35 E-value=1.2 Score=44.09 Aligned_cols=103 Identities=11% Similarity=0.099 Sum_probs=60.6
Q ss_pred EecccCHH---HHhcccCcceEEe---ccCc-chHHHHHHhCCc----EEeccCCCChhhHHHHHHhhceeeeecccccC
Q 046033 308 VQGWAPQA---KILGHGSIGGFIS---HCGW-GSTVEGIMYGVP----IIAVPMVLDQLFNAKMVADIGVGLEVPRDEIN 376 (434)
Q Consensus 308 ~~~~~p~~---~il~~~~~~~~I~---hgG~-~s~~eal~~GvP----~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~ 376 (434)
+..++++. .++..+++ +|. +-|+ .++.||+++|+| +|+.-..+-... ..-|+.+++
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-------~~~g~lv~p---- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-------LSGALLVNP---- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccchhh-------cCCCEEECC----
Confidence 34566766 44555565 773 3454 477999999999 444422221111 233566653
Q ss_pred CcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHH
Q 046033 377 QRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKL 426 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l 426 (434)
.+.++++++|.+++++. ..+.+++.++.++.+.+.. ..-+.+++.+|
T Consensus 412 --~d~~~la~ai~~~l~~~-~~e~~~~~~~~~~~v~~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 --YDIDEVADAIHRALTMP-LEERRERHRKLREYVRTHDVQAWANSFLDDL 459 (460)
T ss_pred --CCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 47899999999999842 1344555555566665555 44455555443
No 135
>PRK14099 glycogen synthase; Provisional
Probab=96.28 E-value=1.4 Score=44.00 Aligned_cols=66 Identities=14% Similarity=0.279 Sum_probs=39.0
Q ss_pred CcceEEe---ccCcc-hHHHHHHhCCcEEeccCCC--ChhhHHHH-HHh--hceeeeecccccCCcccHHHHHHHHHH--
Q 046033 322 SIGGFIS---HCGWG-STVEGIMYGVPIIAVPMVL--DQLFNAKM-VAD--IGVGLEVPRDEINQRVRKEELARVFKQ-- 390 (434)
Q Consensus 322 ~~~~~I~---hgG~~-s~~eal~~GvP~v~~P~~~--dq~~na~~-~~~--~G~g~~~~~~~~~~~~~~~~l~~~v~~-- 390 (434)
.++++|. +=|+| +..||+++|+|.|+....+ |--..... .+. .+.|..++. -+++++.++|.+
T Consensus 369 ~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~------~d~~~La~ai~~a~ 442 (485)
T PRK14099 369 GADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP------VTADALAAALRKTA 442 (485)
T ss_pred cCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC------CCHHHHHHHHHHHH
Confidence 3455885 34444 6789999997766654322 32111110 011 146877763 378999999997
Q ss_pred -Hhc
Q 046033 391 -VVE 393 (434)
Q Consensus 391 -ll~ 393 (434)
+++
T Consensus 443 ~l~~ 446 (485)
T PRK14099 443 ALFA 446 (485)
T ss_pred HHhc
Confidence 555
No 136
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.23 E-value=0.015 Score=46.79 Aligned_cols=78 Identities=24% Similarity=0.355 Sum_probs=46.2
Q ss_pred CcEEEecccCHH-HHhcccCcceEEe--ccC-cchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcc
Q 046033 304 KGMVVQGWAPQA-KILGHGSIGGFIS--HCG-WGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRV 379 (434)
Q Consensus 304 ~~v~~~~~~p~~-~il~~~~~~~~I~--hgG-~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~ 379 (434)
+++.+.+|++.. .+++.+++....+ +.| .+++.|++++|+|+|+.+. ......+..+.|..+. -
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~~~~-------~ 120 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGVLVA-------N 120 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEEE-T-------T
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeEEEC-------C
Confidence 489888988543 5566666633322 122 4899999999999999855 1223444467787663 2
Q ss_pred cHHHHHHHHHHHhc
Q 046033 380 RKEELARVFKQVVE 393 (434)
Q Consensus 380 ~~~~l~~~v~~ll~ 393 (434)
+++++.++|.++++
T Consensus 121 ~~~~l~~~i~~l~~ 134 (135)
T PF13692_consen 121 DPEELAEAIERLLN 134 (135)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc
Confidence 89999999999987
No 137
>PHA01633 putative glycosyl transferase group 1
Probab=96.05 E-value=1.3 Score=41.60 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=52.5
Q ss_pred CCcEEEe---cccCHH---HHhcccCcceEEecc---Cc-chHHHHHHhCCcEEeccC------CCCh------hhHHHH
Q 046033 303 NKGMVVQ---GWAPQA---KILGHGSIGGFISHC---GW-GSTVEGIMYGVPIIAVPM------VLDQ------LFNAKM 360 (434)
Q Consensus 303 ~~~v~~~---~~~p~~---~il~~~~~~~~I~hg---G~-~s~~eal~~GvP~v~~P~------~~dq------~~na~~ 360 (434)
..++.+. ++++.. .+++.+++ +|.-+ |+ .++.||+++|+|+|..-. .+++ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 3467766 444544 45565555 87542 44 578999999999988632 2232 222222
Q ss_pred HH--hhceeeeecccccCCcccHHHHHHHHHHHhc
Q 046033 361 VA--DIGVGLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 361 ~~--~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
.. ..|.|..++ ..++++++++|.++++
T Consensus 278 ~~~~~~g~g~~~~------~~d~~~la~ai~~~~~ 306 (335)
T PHA01633 278 YYDKEHGQKWKIH------KFQIEDMANAIILAFE 306 (335)
T ss_pred hcCcccCceeeec------CCCHHHHHHHHHHHHh
Confidence 22 246776664 3689999999999966
No 138
>PHA01630 putative group 1 glycosyl transferase
Probab=95.91 E-value=0.45 Score=44.85 Aligned_cols=107 Identities=10% Similarity=0.107 Sum_probs=58.7
Q ss_pred ccCHH---HHhcccCcceEEe---ccC-cchHHHHHHhCCcEEeccCCC--Chhh---HHHHHHh-----------hcee
Q 046033 311 WAPQA---KILGHGSIGGFIS---HCG-WGSTVEGIMYGVPIIAVPMVL--DQLF---NAKMVAD-----------IGVG 367 (434)
Q Consensus 311 ~~p~~---~il~~~~~~~~I~---hgG-~~s~~eal~~GvP~v~~P~~~--dq~~---na~~~~~-----------~G~g 367 (434)
+++.. .++..+++ +|. ..| ..++.||+++|+|+|+....+ |.-. |.-.++. .++|
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 35554 44565565 663 333 458999999999999976433 3211 1111110 1456
Q ss_pred eeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Q 046033 368 LEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKK-KGDDEEINVVEKL 426 (434)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~-~~~~~~~~~ve~l 426 (434)
..++ .+.+++.+++.+++.+..++.++++...-+....+ ...+.+++-++++
T Consensus 275 ~~v~-------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l 327 (331)
T PHA01630 275 YFLD-------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKI 327 (331)
T ss_pred cccC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5554 26778888888888842124455544443433333 3355555444444
No 139
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.75 E-value=0.015 Score=43.54 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=44.6
Q ss_pred CchhhhhhhcCCCCCceEEEEecCcccC---CH--HHHHHHHHHHhhCCCcEEEEEecC
Q 046033 227 NDTKIMDWLSRKEPSSVVYVSFGSEYFL---SK--EEMNELASGLLLSEVSFIWVVRFH 280 (434)
Q Consensus 227 ~~~~~~~~l~~~~~~~vV~vs~Gs~~~~---~~--~~~~~i~~~l~~~~~~~i~~~~~~ 280 (434)
.+..+..|+...+.+|-|+||+|+.... .. ..+..+++++...+..+++.+...
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 4567778999988999999999997652 22 478999999999999999988743
No 140
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.71 E-value=2 Score=40.92 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=60.3
Q ss_pred CCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhhhcccCCCCeEE-EEecCCCCCCCCCCCCCCCCCCCccccHHH
Q 046033 1 HGHITPYLALAKKLSQQ--NFHIYFCSTPINLQSMSQNLQEKFSTSIQL-IDLQLPCTFPELHDPYNHTTKNIPRHLIPT 77 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (434)
.|++.=+.++.++|+++ +.+|++++.+.+.+.++.+ +.++- +.+ + .. . ......
T Consensus 16 iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~------P~id~vi~~--~-------~~-~-------~~~~~~ 72 (352)
T PRK10422 16 HGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN------PEINALYGI--K-------NK-K-------AGASEK 72 (352)
T ss_pred cCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC------CCceEEEEe--c-------cc-c-------ccHHHH
Confidence 37778888999999988 8999999999888877763 44432 222 1 00 0 001111
Q ss_pred HHHHHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEE
Q 046033 78 LIEAFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVA 123 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~ 123 (434)
+... ..+...++..++|++|.-........++...|.|..+
T Consensus 73 ~~~~-----~~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 73 IKNF-----FSLIKVLRANKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HHHH-----HHHHHHHhhCCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 1111 1234567778999999765545556677777887754
No 141
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=95.56 E-value=0.064 Score=44.86 Aligned_cols=96 Identities=13% Similarity=0.098 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAA 85 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
-+..++++|+++||+|++++.......... ..... . . ...... ......+..
T Consensus 17 ~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~----------~~~~~--~-~-~~~~~~---------~~~~~~~~~----- 68 (177)
T PF13439_consen 17 VVLNLARALAKRGHEVTVVSPGVKDPIEEE----------LVKIF--V-K-IPYPIR---------KRFLRSFFF----- 68 (177)
T ss_dssp HHHHHHHHHHHTT-EEEEEESS-TTS-SST----------EEEE-------TT-SST---------SS--HHHHH-----
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCccchhh----------cccee--e-e-eecccc---------cccchhHHH-----
Confidence 467899999999999999987533332222 11111 0 0 000000 011111111
Q ss_pred HHHHHHHHhhcCCCEEEEc-CCCchHHHHHHHcCCcEEEEecchHH
Q 046033 86 KPAFCNVLETLKPTLVIYD-LFQPWAAEAAYQHDIAAVAFVTIAAA 130 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d-~~~~~~~~~A~~~giP~v~~~~~~~~ 130 (434)
...+.+++++.+||+|-+. ....+....+.. ++|.+........
T Consensus 69 ~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~~~-~~~~v~~~H~~~~ 113 (177)
T PF13439_consen 69 MRRLRRLIKKEKPDIVHIHGPPAFWIALLACR-KVPIVYTIHGPYF 113 (177)
T ss_dssp HHHHHHHHHHHT-SEEECCTTHCCCHHHHHHH-CSCEEEEE-HHH-
T ss_pred HHHHHHHHHHcCCCeEEecccchhHHHHHhcc-CCCEEEEeCCCcc
Confidence 2355678888899999554 333334444444 9999988877653
No 142
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=95.55 E-value=3.1 Score=44.28 Aligned_cols=104 Identities=9% Similarity=0.124 Sum_probs=66.1
Q ss_pred ccCHH---HHhcccCcceEEec---cCcc-hHHHHHHhCCc---EEeccCCCChhhHHHHHHhhc-eeeeecccccCCcc
Q 046033 311 WAPQA---KILGHGSIGGFISH---CGWG-STVEGIMYGVP---IIAVPMVLDQLFNAKMVADIG-VGLEVPRDEINQRV 379 (434)
Q Consensus 311 ~~p~~---~il~~~~~~~~I~h---gG~~-s~~eal~~GvP---~v~~P~~~dq~~na~~~~~~G-~g~~~~~~~~~~~~ 379 (434)
+++.. +++..+++ +|.- -|+| +..|++++|+| ++++..+.-- +. .+| -|+.+++ .
T Consensus 363 ~v~~~el~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~---~~---~l~~~allVnP------~ 428 (797)
T PLN03063 363 SVDFNYLCALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGA---GQ---SLGAGALLVNP------W 428 (797)
T ss_pred CCCHHHHHHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcCc---hh---hhcCCeEEECC------C
Confidence 45554 55565666 7744 4765 67799999999 4455432211 11 134 5677764 5
Q ss_pred cHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhh
Q 046033 380 RKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLLQL 429 (434)
Q Consensus 380 ~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~~~ 429 (434)
+.++++++|.++|+-+ ..+.+++.+++.+.+++.. ..=+..+++.+.+.
T Consensus 429 D~~~lA~AI~~aL~m~-~~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 429 NITEVSSAIKEALNMS-DEERETRHRHNFQYVKTHSAQKWADDFMSELNDI 478 (797)
T ss_pred CHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHH
Confidence 8999999999999821 3455667777887777766 44466666666543
No 143
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.50 E-value=2.3 Score=40.29 Aligned_cols=96 Identities=18% Similarity=0.110 Sum_probs=62.7
Q ss_pred CCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhhhcccCCCCeE-EEEecCCCCCCCCCCCCCCCCCCCccccHHH
Q 046033 1 HGHITPYLALAKKLSQQ--NFHIYFCSTPINLQSMSQNLQEKFSTSIQ-LIDLQLPCTFPELHDPYNHTTKNIPRHLIPT 77 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (434)
.|++.-+.++.++|+++ +.+|++++.+.+.+.++.+ +.++ ++.+ + .. .. ......
T Consensus 10 iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~------p~vd~vi~~--~-------~~-~~------~~~~~~ 67 (344)
T TIGR02201 10 HGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN------PDINALYGL--D-------RK-KA------KAGERK 67 (344)
T ss_pred ccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC------CCccEEEEe--C-------hh-hh------cchHHH
Confidence 47888889999999987 8999999999888888763 4444 2333 1 00 00 000011
Q ss_pred HHHHHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEE
Q 046033 78 LIEAFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVA 123 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~ 123 (434)
+...+ .+...++..++|++|.-........++...|.|.-+
T Consensus 68 ~~~~~-----~l~~~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 68 LANQF-----HLIKVLRANRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HHHHH-----HHHHHHHhCCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 11111 234567778999999765556678888888999754
No 144
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.20 E-value=0.22 Score=36.91 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=48.7
Q ss_pred ccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhc-eeeeecccccCCcccHHHHHHHHHHHhcccchH-HHHHHHHH
Q 046033 329 HCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIG-VGLEVPRDEINQRVRKEELARVFKQVVEQEEGQ-QIKRKAKE 406 (434)
Q Consensus 329 hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G-~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~-~~~~~a~~ 406 (434)
+|-...+.|++++|+|+|.-.. ..... +-..| -++... +.+++.++|..+++ ++ ..++.+++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~-~~~~~~~~~~~~--------~~~el~~~i~~ll~---~~~~~~~ia~~ 72 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLRE-IFEDGEHIITYN--------DPEELAEKIEYLLE---NPEERRRIAKN 72 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHH-HcCCCCeEEEEC--------CHHHHHHHHHHHHC---CHHHHHHHHHH
Confidence 4556689999999999998854 22222 22224 344442 89999999999999 44 34444444
Q ss_pred HHHHHHhcc--hHHHHHHH
Q 046033 407 LSESIKKKG--DDEEINVV 423 (434)
Q Consensus 407 l~~~~~~~~--~~~~~~~v 423 (434)
-.+.+.+.- ...+..++
T Consensus 73 a~~~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 73 ARERVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 445555433 44455544
No 145
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=94.78 E-value=3.5 Score=38.43 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=55.3
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHhHH
Q 046033 8 LALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAAKP 87 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (434)
..+.+.|.+.||.|.+.+.......-.+. ...|++.+.+|+. .+.... .+..+... .+
T Consensus 22 y~lSq~li~lghkVvvithayg~r~giry----lt~glkVyylp~~---v~~n~t-----------T~ptv~~~----~P 79 (426)
T KOG1111|consen 22 YALSQCLIRLGHKVVVITHAYGNRVGIRY----LTNGLKVYYLPAV---VGYNQT-----------TFPTVFSD----FP 79 (426)
T ss_pred HHhhcchhhcCCeEEEEeccccCccceee----ecCCceEEEEeee---eeeccc-----------chhhhhcc----Cc
Confidence 46788999999999999987444322221 1156777777555 332222 01111111 34
Q ss_pred HHHHHHhhcCCCEEEEc-CCCc---hHHHHHHHcCCcEEEEec
Q 046033 88 AFCNVLETLKPTLVIYD-LFQP---WAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 88 ~~~~~l~~~~pDlVi~d-~~~~---~~~~~A~~~giP~v~~~~ 126 (434)
-++.++...+..+|... .+++ -+..-|+.+|...|+...
T Consensus 80 llr~i~lrE~I~ivhghs~fS~lahe~l~hartMGlktVfTdH 122 (426)
T KOG1111|consen 80 LLRPILLRERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDH 122 (426)
T ss_pred ccchhhhhhceEEEecCChHHHHHHHHHHHHHhcCceEEEecc
Confidence 45555555577777655 2222 346778889977776543
No 146
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.95 Score=44.71 Aligned_cols=125 Identities=17% Similarity=0.215 Sum_probs=79.0
Q ss_pred CCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHHHHh
Q 046033 239 EPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKIL 318 (434)
Q Consensus 239 ~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il 318 (434)
++.-+||++|+......++.+..=++.++..+..++|..+++... +....+ ++.-++.+=+...+++.+-.|....+
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~--~~~~~l-~~la~~~Gv~~eRL~f~p~~~~~~h~ 503 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDA--EINARL-RDLAEREGVDSERLRFLPPAPNEDHR 503 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcH--HHHHHH-HHHHHHcCCChhheeecCCCCCHHHH
Confidence 345699999999888889888888888888888888887764111 111111 22222222244566676666665333
Q ss_pred c---ccCcceEE---eccCcchHHHHHHhCCcEEeccCCCChhh--H-HHHHHhhceeeee
Q 046033 319 G---HGSIGGFI---SHCGWGSTVEGIMYGVPIIAVPMVLDQLF--N-AKMVADIGVGLEV 370 (434)
Q Consensus 319 ~---~~~~~~~I---~hgG~~s~~eal~~GvP~v~~P~~~dq~~--n-a~~~~~~G~g~~~ 370 (434)
+ .+++ |. --||..|..|+|..|||++..+ ++|+. | +-.+..+|+--.+
T Consensus 504 a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 504 ARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred Hhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 2 3444 66 4699999999999999999874 44432 2 2233444655444
No 147
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.49 E-value=0.81 Score=38.31 Aligned_cols=95 Identities=9% Similarity=0.032 Sum_probs=51.7
Q ss_pred hCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHhHHHHHHHHh-
Q 046033 16 QQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAAKPAFCNVLE- 94 (434)
Q Consensus 16 ~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 94 (434)
++||+|+|+|.......- .|++.+.+..+ .+-... .... ...+..-...-....+.+.++-+
T Consensus 1 q~gh~v~fl~~~~~~~~~---------~GV~~~~y~~~---~~~~~~-~~~~----~~~~e~~~~rg~av~~a~~~L~~~ 63 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP---------PGVRVVRYRPP---RGPTPG-THPY----VRDFEAAVLRGQAVARAARQLRAQ 63 (171)
T ss_pred CCCCEEEEEecCCCCCCC---------CCcEEEEeCCC---CCCCCC-CCcc----cccHHHHHHHHHHHHHHHHHHHHc
Confidence 579999999954332221 36888777322 111111 1100 01111111112223344444333
Q ss_pred hcCCCEEEEcCCCchHHHHHHHc-CCcEEEEecc
Q 046033 95 TLKPTLVIYDLFQPWAAEAAYQH-DIAAVAFVTI 127 (434)
Q Consensus 95 ~~~pDlVi~d~~~~~~~~~A~~~-giP~v~~~~~ 127 (434)
.+.||+|++..-...++-+-..+ ++|.+.+.-.
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 45789999998766677777788 8999886543
No 148
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.09 E-value=5.3 Score=37.64 Aligned_cols=92 Identities=14% Similarity=0.023 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHH
Q 046033 2 GHITPYLALAKKLSQQ--NFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLI 79 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (434)
|++.-+.++.++|++. +.+|+|++.+...+.++.. +.++-+-. ++ .+ . .. ..+.
T Consensus 11 GD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~------p~id~v~~-~~-------~~--~-------~~-~~~~ 66 (334)
T TIGR02195 11 GDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM------PEIRQAID-MP-------LG--H-------GA-LELT 66 (334)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC------chhceeee-cC-------Cc--c-------cc-hhhh
Confidence 7888889999999987 9999999998887777763 33332111 11 00 0 00 0011
Q ss_pred HHHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEE
Q 046033 80 EAFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAV 122 (434)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v 122 (434)
. ...+...++..++|++|.-....-...++...|+|.-
T Consensus 67 ~-----~~~~~~~lr~~~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 67 E-----RRRLGRSLREERYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred H-----HHHHHHHHhhcCCCEEEECCCCHHHHHHHHHcCCCce
Confidence 1 1234466777899999987665666777788888864
No 149
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=93.85 E-value=0.45 Score=39.94 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=62.2
Q ss_pred CChHHHHHHHHHH-Hh-CCCEEEEEeCCCchhhh--hhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHH
Q 046033 2 GHITPYLALAKKL-SQ-QNFHIYFCSTPINLQSM--SQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPT 77 (434)
Q Consensus 2 GH~~p~l~lA~~L-~~-~Gh~V~~~~~~~~~~~v--~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (434)
||+.=|+.|.+.+ .+ ..++..+++..+....- .+... ......++..++.. ..-. ......
T Consensus 9 GHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~-~~~~~~~~~~~~r~----------r~v~----q~~~~~ 73 (170)
T PF08660_consen 9 GHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEK-SSSKRHKILEIPRA----------REVG----QSYLTS 73 (170)
T ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHH-hccccceeeccceE----------EEec----hhhHhh
Confidence 8999999999999 33 35666667666554432 21110 00011133333111 0000 112222
Q ss_pred HHHHHHHhHHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHc------CCcEEEEecch
Q 046033 78 LIEAFDAAKPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQH------DIAAVAFVTIA 128 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~------giP~v~~~~~~ 128 (434)
....+......+. ++...+||+||++ ..+...+.+|+.+ |.+.|.+.+..
T Consensus 74 ~~~~l~~~~~~~~-il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 74 IFTTLRAFLQSLR-ILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred HHHHHHHHHHHHH-HHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 3333333333333 5556799999999 5556778889999 99999877553
No 150
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.47 E-value=6.7 Score=36.74 Aligned_cols=132 Identities=13% Similarity=0.043 Sum_probs=71.2
Q ss_pred CceEE-EEecCcc--cCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecc--cCH-
Q 046033 241 SSVVY-VSFGSEY--FLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGW--APQ- 314 (434)
Q Consensus 241 ~~vV~-vs~Gs~~--~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~--~p~- 314 (434)
++.|. +..||.. .++.+.+.++++.+.+.+.++++..+.+ .+ ....+++.+...++.+.+- +.+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~-~e---------~~~~~~i~~~~~~~~l~g~~sL~el 247 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAE-HE---------EQRAKRLAEGFPYVEVLPKLSLEQV 247 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCH-HH---------HHHHHHHHccCCcceecCCCCHHHH
Confidence 34554 4444433 2667889999999876666654433321 11 0111111001122322222 222
Q ss_pred HHHhcccCcceEEeccCcchHHHHHHhCCcEEec--cCCCCh----hhHHHHHHhhceeeeecccccCCcccHHHHHHHH
Q 046033 315 AKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAV--PMVLDQ----LFNAKMVADIGVGLEVPRDEINQRVRKEELARVF 388 (434)
Q Consensus 315 ~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~--P~~~dq----~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v 388 (434)
.+++.++++ +|+. .-|.+.=|.+.|+|+|.+ |..... ..|...|.- ++.. ...++++++-+++
T Consensus 248 aali~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~--~~~c------m~~I~~e~V~~~~ 316 (322)
T PRK10964 248 ARVLAGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRS--PGKS------MADLSAETVFQKL 316 (322)
T ss_pred HHHHHhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecC--CCcc------cccCCHHHHHHHH
Confidence 367777666 8876 578899999999999888 432211 111111110 0111 3457899999999
Q ss_pred HHHhc
Q 046033 389 KQVVE 393 (434)
Q Consensus 389 ~~ll~ 393 (434)
+++|+
T Consensus 317 ~~~l~ 321 (322)
T PRK10964 317 ETLIS 321 (322)
T ss_pred HHHhh
Confidence 88875
No 151
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.21 E-value=9.5 Score=37.75 Aligned_cols=103 Identities=9% Similarity=0.075 Sum_probs=67.7
Q ss_pred EecccCHHH---HhcccCcceEEe---ccCc-chHHHHHHhCCc----EEeccCCCChhhHHHHHHhhceeeeecccccC
Q 046033 308 VQGWAPQAK---ILGHGSIGGFIS---HCGW-GSTVEGIMYGVP----IIAVPMVLDQLFNAKMVADIGVGLEVPRDEIN 376 (434)
Q Consensus 308 ~~~~~p~~~---il~~~~~~~~I~---hgG~-~s~~eal~~GvP----~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~ 376 (434)
+...+++.+ ++..+++ ++. +-|+ .+..||+++|+| +|+--..+-... + +-|+.+++
T Consensus 340 l~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~----l---~~gllVnP---- 406 (456)
T TIGR02400 340 LNRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQE----L---NGALLVNP---- 406 (456)
T ss_pred EcCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHH----h---CCcEEECC----
Confidence 334556654 4555555 774 3465 578899999999 666654442221 2 24666653
Q ss_pred CcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHH
Q 046033 377 QRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKL 426 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l 426 (434)
.++++++++|.++|+.. ..+.+++.+++.+.+.+.. ..=+.++++.|
T Consensus 407 --~d~~~lA~aI~~aL~~~-~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 407 --YDIDGMADAIARALTMP-LEEREERHRAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred --CCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 47999999999999832 3466777888888877766 55566666665
No 152
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.15 E-value=6.7 Score=35.83 Aligned_cols=93 Identities=12% Similarity=0.059 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHH
Q 046033 1 HGHITPYLALAKKLSQQ--NFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTL 78 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
.|++.-+.++.++|+++ +-+|++++.+...+.++.. +.++-+-. .+ .. . .......+
T Consensus 10 iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~------p~id~v~~-~~-------~~-~------~~~~~~~~ 68 (279)
T cd03789 10 IGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM------PEVDRVIV-LP-------KK-H------GKLGLGAR 68 (279)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC------CccCEEEE-cC-------Cc-c------cccchHHH
Confidence 37888899999999987 4899999999888877763 33433221 11 11 0 00011111
Q ss_pred HHHHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEE
Q 046033 79 IEAFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAV 122 (434)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v 122 (434)
. .+...++..++|+++.-........++...+++..
T Consensus 69 ~--------~~~~~l~~~~~D~vi~~~~~~~~~~~~~~~~~~~~ 104 (279)
T cd03789 69 R--------RLARALRRRRYDLAIDLQGSLRSALLPFLAGAPRR 104 (279)
T ss_pred H--------HHHHHHhhcCCCEEEECCCccHHHHHHHHhCCCeE
Confidence 1 23345667799999977555555555666666554
No 153
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=92.90 E-value=6.8 Score=35.20 Aligned_cols=98 Identities=14% Similarity=0.249 Sum_probs=53.2
Q ss_pred hhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEE
Q 046033 229 TKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVV 308 (434)
Q Consensus 229 ~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~ 308 (434)
++..+++...+ ...||++.||. .+..+.. ....+.++++-+-..... ..-+ .+.++..
T Consensus 119 ~eA~~~l~~~~-~~~iflttGsk------~L~~f~~-~~~~~~r~~~RvLp~~~~----~~g~----------~~~~iia 176 (249)
T PF02571_consen 119 EEAAELLKELG-GGRIFLTTGSK------NLPPFVP-APLPGERLFARVLPTPES----ALGF----------PPKNIIA 176 (249)
T ss_pred HHHHHHHhhcC-CCCEEEeCchh------hHHHHhh-cccCCCEEEEEECCCccc----cCCC----------ChhhEEE
Confidence 45555554433 23899999984 3333433 334555666554432211 0111 1223432
Q ss_pred -ec-cc--CHHHHhcccCcceEEec--cCc---chHHHHHHhCCcEEec
Q 046033 309 -QG-WA--PQAKILGHGSIGGFISH--CGW---GSTVEGIMYGVPIIAV 348 (434)
Q Consensus 309 -~~-~~--p~~~il~~~~~~~~I~h--gG~---~s~~eal~~GvP~v~~ 348 (434)
.+ |- -..+++.+-.++++||. ||. .-+..|...|+|+|++
T Consensus 177 ~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 177 MQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVI 225 (249)
T ss_pred EeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEE
Confidence 22 22 12377787788889975 444 2356678889999888
No 154
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=92.34 E-value=0.25 Score=42.55 Aligned_cols=108 Identities=19% Similarity=0.148 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHhH
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAAK 86 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
..+|+++|++.||+|+++.+...+...-... +....++......+ ..+.+ .. .......-..+ ..
T Consensus 16 i~aL~~~L~~~g~~V~VvAP~~~~Sg~g~si--t~~~pl~~~~~~~~----~~~~~-~~------~~~v~GTPaDc--v~ 80 (196)
T PF01975_consen 16 IRALAKALSALGHDVVVVAPDSEQSGTGHSI--TLHKPLRVTEVEPG----HDPGG-VE------AYAVSGTPADC--VK 80 (196)
T ss_dssp HHHHHHHHTTTSSEEEEEEESSSTTTSTTS----SSSEEEEEEEE-T----TCCST-TE------EEEESS-HHHH--HH
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCcCcceee--cCCCCeEEEEEEec----ccCCC-CC------EEEEcCcHHHH--HH
Confidence 5678999988899999999987776654321 12234455333100 00000 00 00111111111 11
Q ss_pred HHHHHHHhhcCCCEEEEcC----------CC---chHHHHHHHcCCcEEEEecchH
Q 046033 87 PAFCNVLETLKPTLVIYDL----------FQ---PWAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~----------~~---~~~~~~A~~~giP~v~~~~~~~ 129 (434)
=.+..++.+.+||+||+-. +. .+++.-|...|||.|.++....
T Consensus 81 ~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~~~ 136 (196)
T PF01975_consen 81 LALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLDSD 136 (196)
T ss_dssp HHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEESS
T ss_pred HHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecccc
Confidence 1344556555799999851 11 2345556677999999986653
No 155
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=92.29 E-value=10 Score=35.90 Aligned_cols=94 Identities=12% Similarity=-0.004 Sum_probs=62.3
Q ss_pred CCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHH
Q 046033 1 HGHITPYLALAKKLSQQ--NFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTL 78 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
.|++.=+.++.++|+++ +.+|+|++.+...+.++.+ +.++-+-. ++ .. . . . ..+
T Consensus 11 iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~------P~vd~vi~-~~-------~~--~---~----~-~~~ 66 (348)
T PRK10916 11 VGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM------PEVNEAIP-MP-------LG--H---G----A-LEI 66 (348)
T ss_pred ccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC------CccCEEEe-cc-------cc--c---c----h-hhh
Confidence 47888899999999986 9999999999888888763 44443221 11 00 0 0 0 001
Q ss_pred HHHHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEE
Q 046033 79 IEAFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVA 123 (434)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~ 123 (434)
.. ...+...++..++|+||.=....-...++...|+|.-.
T Consensus 67 ~~-----~~~l~~~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 GE-----RRRLGHSLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred HH-----HHHHHHHHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 11 12334667788999999775556677778888888654
No 156
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.04 E-value=13 Score=34.61 Aligned_cols=154 Identities=20% Similarity=0.303 Sum_probs=92.2
Q ss_pred CCCceEEEEecCcccCCHHHHHHHHHHHhhC---------CC-cEEEEEecCCCCCccccccCchhHHHhhc-CCCCcEE
Q 046033 239 EPSSVVYVSFGSEYFLSKEEMNELASGLLLS---------EV-SFIWVVRFHSEGNFTIEEALPQGFAEEIQ-GNNKGMV 307 (434)
Q Consensus 239 ~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~---------~~-~~i~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~v~ 307 (434)
+++|.++||.- +....+.+..+++|+..- +. ++++.+++. +.+-+.+..+++ +...++.
T Consensus 252 ~~~pallvsST--swTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGK--------GPlkE~Y~~~I~~~~~~~v~ 321 (444)
T KOG2941|consen 252 PERPALLVSST--SWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGK--------GPLKEKYSQEIHEKNLQHVQ 321 (444)
T ss_pred cCCCeEEEecC--CCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCC--------CchhHHHHHHHHHhccccee
Confidence 34778888642 222346677777777621 11 345554432 223344544442 2344554
Q ss_pred -EecccCHH---HHhcccCcceEEeccCcc-----hHHHHHHhCCcEEeccCCCChhhHHHHHHhh-ceeeeecccccCC
Q 046033 308 -VQGWAPQA---KILGHGSIGGFISHCGWG-----STVEGIMYGVPIIAVPMVLDQLFNAKMVADI-GVGLEVPRDEINQ 377 (434)
Q Consensus 308 -~~~~~p~~---~il~~~~~~~~I~hgG~~-----s~~eal~~GvP~v~~P~~~dq~~na~~~~~~-G~g~~~~~~~~~~ 377 (434)
...|+.-. .+|+.++++.+.|-...| -+.+..-+|+|++.+- +.--..+.+. -=|....
T Consensus 322 ~~tpWL~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~-----fkcl~ELVkh~eNGlvF~------ 390 (444)
T KOG2941|consen 322 VCTPWLEAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVN-----FKCLDELVKHGENGLVFE------ 390 (444)
T ss_pred eeecccccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeec-----chhHHHHHhcCCCceEec------
Confidence 34687443 778888988888776655 6888899999998883 2333334444 3466664
Q ss_pred cccHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHhcc
Q 046033 378 RVRKEELARVFKQVVEQ-----EEGQQIKRKAKELSESIKKKG 415 (434)
Q Consensus 378 ~~~~~~l~~~v~~ll~~-----~~~~~~~~~a~~l~~~~~~~~ 415 (434)
+.+++.+.+.-+++| ++-.++++++++-++.-.+..
T Consensus 391 --Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~~e~RW~~~ 431 (444)
T KOG2941|consen 391 --DSEELAEQLQMLFKNFPDNADELNQLKKNLREEQELRWDES 431 (444)
T ss_pred --cHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHHHhhhHHHH
Confidence 788999999988873 112466666666655444433
No 157
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=90.62 E-value=26 Score=37.16 Aligned_cols=107 Identities=10% Similarity=0.130 Sum_probs=64.1
Q ss_pred EEecccCHHH---HhcccCcceEEec---cCc-chHHHHHHhCCc---EEeccC-CCChhhHHHHHHhhceeeeeccccc
Q 046033 307 VVQGWAPQAK---ILGHGSIGGFISH---CGW-GSTVEGIMYGVP---IIAVPM-VLDQLFNAKMVADIGVGLEVPRDEI 375 (434)
Q Consensus 307 ~~~~~~p~~~---il~~~~~~~~I~h---gG~-~s~~eal~~GvP---~v~~P~-~~dq~~na~~~~~~G~g~~~~~~~~ 375 (434)
++..++++.+ ++..+++ ++.. -|+ .+..|++++|+| .+++.. .+.-. .+.-|+.+++
T Consensus 345 ~~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~-------~l~~~llv~P--- 412 (726)
T PRK14501 345 YFYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA-------ELAEALLVNP--- 412 (726)
T ss_pred EEeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH-------HhCcCeEECC---
Confidence 4556777764 4455555 6643 354 578899999775 233322 22111 1122666664
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhh
Q 046033 376 NQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLLQL 429 (434)
Q Consensus 376 ~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~~~ 429 (434)
.+.++++++|.++|+.. ..+.+++.+++.+.+.+.. ..-+.++++.+.+.
T Consensus 413 ---~d~~~la~ai~~~l~~~-~~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 413 ---NDIEGIAAAIKRALEMP-EEEQRERMQAMQERLRRYDVHKWASDFLDELREA 463 (726)
T ss_pred ---CCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 47999999999999831 2355666667777776655 44566666666553
No 158
>PRK12342 hypothetical protein; Provisional
Probab=89.52 E-value=3.2 Score=37.28 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=28.7
Q ss_pred HHHHHhhcCCCEEEEcCC-Cc-----hHHHHHHHcCCcEEEEecc
Q 046033 89 FCNVLETLKPTLVIYDLF-QP-----WAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 89 ~~~~l~~~~pDlVi~d~~-~~-----~~~~~A~~~giP~v~~~~~ 127 (434)
+...++...||+|++... .- .+..+|+.+|+|++.....
T Consensus 101 La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 101 LAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 345666667999998722 22 3789999999999986644
No 159
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.35 E-value=1.4 Score=39.86 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=64.0
Q ss_pred cccCHHHHhcccCcceEEeccCcchHH-HHHHhCCcEEeccCCCCh--hhHHHHHHhh-ceeeeecccccCCcccHHHHH
Q 046033 310 GWAPQAKILGHGSIGGFISHCGWGSTV-EGIMYGVPIIAVPMVLDQ--LFNAKMVADI-GVGLEVPRDEINQRVRKEELA 385 (434)
Q Consensus 310 ~~~p~~~il~~~~~~~~I~hgG~~s~~-eal~~GvP~v~~P~~~dq--~~na~~~~~~-G~g~~~~~~~~~~~~~~~~l~ 385 (434)
.|-...++|.++++ +| |=+||-. +++-.|||+|.+|-.+-| +..|.+=.++ |+.+.+-. -.++.-.
T Consensus 301 sqqsfadiLH~ada--al--gmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~------~~aq~a~ 370 (412)
T COG4370 301 SQQSFADILHAADA--AL--GMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR------PEAQAAA 370 (412)
T ss_pred eHHHHHHHHHHHHH--HH--HhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC------CchhhHH
Confidence 44455577766665 44 2244444 467899999999999988 4556666665 99988863 1344444
Q ss_pred HHHHHHhcccchHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHh
Q 046033 386 RVFKQVVEQEEGQQIKRKAKELS-ESIKKKGDDEEINVVEKLLQ 428 (434)
Q Consensus 386 ~~v~~ll~~~~~~~~~~~a~~l~-~~~~~~~~~~~~~~ve~l~~ 428 (434)
.+..++|. |+.+.+.++.=. +++.+ ..++..+.|.+.+
T Consensus 371 ~~~q~ll~---dp~r~~air~nGqrRiGq--aGaa~rIAe~l~e 409 (412)
T COG4370 371 QAVQELLG---DPQRLTAIRHNGQRRIGQ--AGAARRIAEELGE 409 (412)
T ss_pred HHHHHHhc---ChHHHHHHHhcchhhccC--cchHHHHHHHHHH
Confidence 44555888 677766666322 23222 4455566666544
No 160
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=89.15 E-value=2.8 Score=37.31 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHhH
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAAK 86 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
..+|+++|+ .+++|+++.++..+.-+.... ++...++...+. . . .....+-+.+.. .
T Consensus 16 i~aL~~al~-~~~dV~VVAP~~~qSg~s~sl--Tl~~Plr~~~~~------~---~-~~av~GTPaDCV----------~ 72 (252)
T COG0496 16 IRALARALR-EGADVTVVAPDREQSGASHSL--TLHEPLRVRQVD------N---G-AYAVNGTPADCV----------I 72 (252)
T ss_pred HHHHHHHHh-hCCCEEEEccCCCCccccccc--ccccCceeeEec------c---c-eEEecCChHHHH----------H
Confidence 456788888 999999999988777665421 111223322220 0 0 000001111111 1
Q ss_pred HHHHHHHhhcCCCEEEEcCC-------------CchHHHHHHHcCCcEEEEecchH
Q 046033 87 PAFCNVLETLKPTLVIYDLF-------------QPWAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~-------------~~~~~~~A~~~giP~v~~~~~~~ 129 (434)
-.+..++++.+||+||+... +.++++=|..+|||.|.+|....
T Consensus 73 lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~~~ 128 (252)
T COG0496 73 LGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLAYR 128 (252)
T ss_pred HHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeehhc
Confidence 24556777778999998521 22345555678999999886643
No 161
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=88.11 E-value=14 Score=34.57 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=58.2
Q ss_pred CcEE-EecccCHH---HHhcccCcceEEec--cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCC
Q 046033 304 KGMV-VQGWAPQA---KILGHGSIGGFISH--CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQ 377 (434)
Q Consensus 304 ~~v~-~~~~~p~~---~il~~~~~~~~I~h--gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~ 377 (434)
.++. +.+++|.+ .+|..+++..+.|. =|.|+++-.+..|+|+++- .+-+++-. +.+.|+-+-.. .+
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~~~-l~~~~ipVlf~----~d 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFWQD-LKEQGIPVLFY----GD 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHHHH-HHhCCCeEEec----cc
Confidence 3554 45677765 78887887555543 4799999999999999987 23344433 44447766665 46
Q ss_pred cccHHHHHHHHHHHhc
Q 046033 378 RVRKEELARVFKQVVE 393 (434)
Q Consensus 378 ~~~~~~l~~~v~~ll~ 393 (434)
.++.+.|+++=+++..
T Consensus 317 ~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 317 ELDEALVREAQRQLAN 332 (360)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 7999999998888776
No 162
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=87.98 E-value=16 Score=33.73 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=53.5
Q ss_pred CcEE-EecccCHH---HHhcccCcceEEec--cCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCC
Q 046033 304 KGMV-VQGWAPQA---KILGHGSIGGFISH--CGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQ 377 (434)
Q Consensus 304 ~~v~-~~~~~p~~---~il~~~~~~~~I~h--gG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~ 377 (434)
+++. +.+++|.+ .+|..+++..++|+ =|.||++-.++.|+|+++--. -++|.. +.+.|+-+-.. .+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~---n~fwqd-l~e~gv~Vlf~----~d 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD---NPFWQD-LTEQGLPVLFT----GD 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC---CchHHH-HHhCCCeEEec----CC
Confidence 3444 44566654 88888888666665 478999999999999998732 233333 34446666444 45
Q ss_pred cccHHHHHHHHHHHh
Q 046033 378 RVRKEELARVFKQVV 392 (434)
Q Consensus 378 ~~~~~~l~~~v~~ll 392 (434)
.++...++++=+++.
T Consensus 278 ~L~~~~v~e~~rql~ 292 (322)
T PRK02797 278 DLDEDIVREAQRQLA 292 (322)
T ss_pred cccHHHHHHHHHHHH
Confidence 677777766644443
No 163
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=87.74 E-value=2.5 Score=42.55 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=59.1
Q ss_pred CcEEEecccCH---HHHhcccCcceEEecc---CcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCC
Q 046033 304 KGMVVQGWAPQ---AKILGHGSIGGFISHC---GWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQ 377 (434)
Q Consensus 304 ~~v~~~~~~p~---~~il~~~~~~~~I~hg---G~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~ 377 (434)
..+.+..+... ...+..+.+ +|.-+ |.++..||+.+|+|+| .+.....++...=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~li~------ 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGYIID------ 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcEEeC------
Confidence 46777777773 256665555 88544 6779999999999999 222233333333455553
Q ss_pred cccHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHH
Q 046033 378 RVRKEELARVFKQVVEQEE-GQQIKRKAKELSESI 411 (434)
Q Consensus 378 ~~~~~~l~~~v~~ll~~~~-~~~~~~~a~~l~~~~ 411 (434)
+..++.++|..+|.+.. -..+...+-+.++..
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~y 506 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDDY 506 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 78999999999999522 234555555555444
No 164
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=87.56 E-value=1.9 Score=36.17 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=29.8
Q ss_pred HHhHHHHHHHHhhcCCCEEEEcCCCchHH-HH---HH-Hc-CCcEEEEecc
Q 046033 83 DAAKPAFCNVLETLKPTLVIYDLFQPWAA-EA---AY-QH-DIAAVAFVTI 127 (434)
Q Consensus 83 ~~~~~~~~~~l~~~~pDlVi~d~~~~~~~-~~---A~-~~-giP~v~~~~~ 127 (434)
....+.+.++|++.+||+|||++..+..+ .. .+ .+ ++|++++.+.
T Consensus 75 ~~~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 75 RLFARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 33466888999999999999995543333 11 12 23 5788766654
No 165
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=87.21 E-value=0.73 Score=34.45 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=51.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHhH
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAAK 86 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
++++|+.|.+.||++ ++++...+.+.+ .|++...+... .+.++. ..+ +.
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~-------~Gi~~~~v~~~---~~~~~~----~~g---~~------------ 50 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKE-------HGIEVTEVVNK---IGEGES----PDG---RV------------ 50 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHH-------TT--EEECCEE---HSTG-G----GTH---CH------------
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHH-------cCCCceeeeee---cccCcc----CCc---hh------------
Confidence 578999999999775 466667778888 78885444100 011100 000 01
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchH---------HHHHHHcCCcEEE
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWA---------AEAAYQHDIAAVA 123 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~---------~~~A~~~giP~v~ 123 (434)
.+.+++++.+.|+||..+..... ..+|...+||+++
T Consensus 51 -~i~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~T 95 (95)
T PF02142_consen 51 -QIMDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLFT 95 (95)
T ss_dssp -HHHHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEEC
T ss_pred -HHHHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCcC
Confidence 56688999999999988443322 4567778898863
No 166
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=86.77 E-value=4.4 Score=36.56 Aligned_cols=81 Identities=16% Similarity=0.107 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhh-hhhhhcccCCCC-eEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHH
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQS-MSQNLQEKFSTS-IQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDA 84 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~-v~~~~~~~~~~g-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
-..||++|.++||+|+..+....... +.+ .| ... .. ..+ +
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~-------~g~~~v-~~------g~l-------------~----------- 53 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPI-------HQALTV-HT------GAL-------------D----------- 53 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccc-------cCCceE-EE------CCC-------------C-----------
Confidence 45789999999999998877654432 222 11 111 11 000 0
Q ss_pred hHHHHHHHHhhcCCCEEEEcCCCc------hHHHHHHHcCCcEEEEec
Q 046033 85 AKPAFCNVLETLKPTLVIYDLFQP------WAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 85 ~~~~~~~~l~~~~pDlVi~d~~~~------~~~~~A~~~giP~v~~~~ 126 (434)
...+.+++++.++|+||--.+-+ .+..+++.+|||++.+.-
T Consensus 54 -~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR 100 (256)
T TIGR00715 54 -PQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFER 100 (256)
T ss_pred -HHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 12345778888999888553423 245778889999998763
No 167
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=86.68 E-value=29 Score=32.77 Aligned_cols=94 Identities=18% Similarity=0.041 Sum_probs=61.7
Q ss_pred CCChHHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHH
Q 046033 1 HGHITPYLALAKKLSQQ--NFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTL 78 (434)
Q Consensus 1 ~GH~~p~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
.|++.=..++-..|+++ +.+++|++.+.+.+.+... +.++-+.. .... . .. ..+
T Consensus 12 iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~------p~I~~vi~--------~~~~-~-------~~--~~~ 67 (334)
T COG0859 12 LGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN------PEIDKVII--------IDKK-K-------KG--LGL 67 (334)
T ss_pred hhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC------hHhhhhcc--------cccc-c-------cc--cch
Confidence 37777788888899888 5999999999888888762 22222111 0000 0 00 111
Q ss_pred HHHHHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEE
Q 046033 79 IEAFDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVA 123 (434)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~ 123 (434)
... ..+.+.++..++|+||.=...+-...++..+++|.-.
T Consensus 68 ~~~-----~~l~~~lr~~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 68 KER-----LALLRTLRKERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred HHH-----HHHHHHhhccCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 111 2344778888999999887777778888888888764
No 168
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=85.47 E-value=6.4 Score=28.91 Aligned_cols=79 Identities=24% Similarity=0.341 Sum_probs=50.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHhH
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAAK 86 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
++++++.|.+.|++|. + ++...+.+++ .|+...... + ....+ .
T Consensus 2 ~~~~~~~l~~lG~~i~-A-T~gTa~~L~~-------~Gi~~~~~~-~----ki~~~-------~---------------- 44 (90)
T smart00851 2 LVELAKRLAELGFELV-A-TGGTAKFLRE-------AGLPVKTLH-P----KVHGG-------I---------------- 44 (90)
T ss_pred HHHHHHHHHHCCCEEE-E-ccHHHHHHHH-------CCCcceecc-C----CCCCC-------C----------------
Confidence 4689999999999983 4 4455677777 666653220 0 00001 0
Q ss_pred HHHHHHHhhcCCCEEEEcCC---------CchHHHHHHHcCCcEE
Q 046033 87 PAFCNVLETLKPTLVIYDLF---------QPWAAEAAYQHDIAAV 122 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~---------~~~~~~~A~~~giP~v 122 (434)
+.+.+.++..+.|+||.... .+.-..+|...+||++
T Consensus 45 ~~i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 45 LAILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 13557888889999998633 1233466778899986
No 169
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=85.46 E-value=5.8 Score=30.60 Aligned_cols=83 Identities=18% Similarity=0.117 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHH
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDA 84 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.-++++|+.|...|+++ ++++...+.+.+ .|++...+..+ +.+
T Consensus 12 ~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~-------~Gi~~~~v~~~------~~~---------------------- 54 (112)
T cd00532 12 AMLVDLAPKLSSDGFPL--FATGGTSRVLAD-------AGIPVRAVSKR------HED---------------------- 54 (112)
T ss_pred HHHHHHHHHHHHCCCEE--EECcHHHHHHHH-------cCCceEEEEec------CCC----------------------
Confidence 34788999999999998 356667777777 77877666211 000
Q ss_pred hHHHHHHHHhh-cCCCEEEEcCC----------CchHHHHHHHcCCcEEEE
Q 046033 85 AKPAFCNVLET-LKPTLVIYDLF----------QPWAAEAAYQHDIAAVAF 124 (434)
Q Consensus 85 ~~~~~~~~l~~-~~pDlVi~d~~----------~~~~~~~A~~~giP~v~~ 124 (434)
-.+.+.+.+++ .+.|+||.... .+....+|-..+||+++-
T Consensus 55 g~~~i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~ 105 (112)
T cd00532 55 GEPTVDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTP 105 (112)
T ss_pred CCcHHHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEEC
Confidence 12445577888 89999998421 223346688889999964
No 170
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=85.39 E-value=24 Score=35.17 Aligned_cols=107 Identities=5% Similarity=0.007 Sum_probs=69.7
Q ss_pred EEEecccCHHH---HhcccCcceEE---eccCcchHH-HHHHhCC----cEEeccCCCChhhHHHHHHhhceeeeecccc
Q 046033 306 MVVQGWAPQAK---ILGHGSIGGFI---SHCGWGSTV-EGIMYGV----PIIAVPMVLDQLFNAKMVADIGVGLEVPRDE 374 (434)
Q Consensus 306 v~~~~~~p~~~---il~~~~~~~~I---~hgG~~s~~-eal~~Gv----P~v~~P~~~dq~~na~~~~~~G~g~~~~~~~ 374 (434)
+++...+|... ++..+++ ++ ..-|+|.+. |.++++. |+|+--+.+ ..+.+.-|+.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-------aa~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-------AAVELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-------chhhcCCCEEECC--
Confidence 45667788774 4455666 55 346888655 9999877 555443222 1244445777765
Q ss_pred cCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHh
Q 046033 375 INQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLLQ 428 (434)
Q Consensus 375 ~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~~ 428 (434)
.+.++++++|.++|+-. ..+-+++.++|.+.+.... ..=+..++..|..
T Consensus 433 ----~d~~~~A~ai~~AL~m~-~~Er~~R~~~l~~~v~~~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 433 ----YDPVRMDETIYVALAMP-KAEQQARMREMFDAVNYYDVQRWADEFLAAVSP 482 (487)
T ss_pred ----CCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhh
Confidence 58999999999999832 2345777777777777766 4446667666643
No 171
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=84.76 E-value=8.5 Score=34.67 Aligned_cols=39 Identities=10% Similarity=-0.045 Sum_probs=29.3
Q ss_pred HHHHHhhcCCCEEEEcCCC------chHHHHHHHcCCcEEEEecc
Q 046033 89 FCNVLETLKPTLVIYDLFQ------PWAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 89 ~~~~l~~~~pDlVi~d~~~------~~~~~~A~~~giP~v~~~~~ 127 (434)
+...+++..||+|++...+ -.+..+|+.+|+|++.....
T Consensus 104 La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 104 LAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 4456666689999987222 26789999999999987654
No 172
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=84.61 E-value=9.4 Score=29.26 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHH
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDA 84 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.-++++++.|.+.|+++. +++...+.+.+ .|+....+..+ . .
T Consensus 13 ~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~-------~gi~~~~v~~~---~---~----------------------- 54 (110)
T cd01424 13 PEAVEIAKRLAELGFKLV--ATEGTAKYLQE-------AGIPVEVVNKV---S---E----------------------- 54 (110)
T ss_pred hHHHHHHHHHHHCCCEEE--EchHHHHHHHH-------cCCeEEEEeec---C---C-----------------------
Confidence 357889999999999983 55567777777 67777665222 0 0
Q ss_pred hHHHHHHHHhhcCCCEEEEcCC-------CchHHHHHHHcCCcEEE
Q 046033 85 AKPAFCNVLETLKPTLVIYDLF-------QPWAAEAAYQHDIAAVA 123 (434)
Q Consensus 85 ~~~~~~~~l~~~~pDlVi~d~~-------~~~~~~~A~~~giP~v~ 123 (434)
..+.+.+.+++.++|+||.... .+.....|-..|||+++
T Consensus 55 ~~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 55 GRPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred CchhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 1234557788889999998532 24556778889999995
No 173
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=84.59 E-value=2.7 Score=40.31 Aligned_cols=113 Identities=16% Similarity=0.208 Sum_probs=66.0
Q ss_pred CCCcEEEe-cccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEeccCCCChhhHHH----HHHhhceeeeecccccC
Q 046033 302 NNKGMVVQ-GWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAK----MVADIGVGLEVPRDEIN 376 (434)
Q Consensus 302 ~~~~v~~~-~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~----~~~~~G~g~~~~~~~~~ 376 (434)
...++... +..+...+|..+++ +||=- .+.+.|.++.++|+|....-.|.+...+ -.+....|..+
T Consensus 250 ~~~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~------ 320 (369)
T PF04464_consen 250 DNSNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIV------ 320 (369)
T ss_dssp -TTTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EE------
T ss_pred cCCcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCcee------
Confidence 34566554 34456688887776 99874 5688999999999998865555442211 01122333333
Q ss_pred CcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHH
Q 046033 377 QRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLL 427 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~ 427 (434)
-+.++|.++|+.++++ +..++++-++..+.+-... -.+.+++++.+.
T Consensus 321 --~~~~eL~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 321 --YNFEELIEAIENIIEN--PDEYKEKREKFRDKFFKYNDGNSSERIVNYIF 368 (369)
T ss_dssp --SSHHHHHHHHTTHHHH--HHHTHHHHHHHHHHHSTT--S-HHHHHHHHHH
T ss_pred --CCHHHHHHHHHhhhhC--CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHh
Confidence 3789999999999884 3456777777888876543 445566666553
No 174
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=84.34 E-value=8.1 Score=35.13 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=32.4
Q ss_pred cEEEecccCHHHHhcccCcceEEeccCcchHHHHHHhCCcEEecc
Q 046033 305 GMVVQGWAPQAKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVP 349 (434)
Q Consensus 305 ~v~~~~~~p~~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P 349 (434)
.+.+.+-.+-..++.+++. |||-. .++-+||+.+|+|++++.
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--Vvtin-StvGlEAll~gkpVi~~G 225 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTIN-STVGLEALLHGKPVIVFG 225 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEEC-CHHHHHHHHcCCceEEec
Confidence 3445566777899998776 88774 357899999999999985
No 175
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=82.93 E-value=35 Score=30.65 Aligned_cols=37 Identities=19% Similarity=0.350 Sum_probs=28.1
Q ss_pred cccCHHHHhcccCcceEE-eccCcchHHHHHHhCCcEEec
Q 046033 310 GWAPQAKILGHGSIGGFI-SHCGWGSTVEGIMYGVPIIAV 348 (434)
Q Consensus 310 ~~~p~~~il~~~~~~~~I-~hgG~~s~~eal~~GvP~v~~ 348 (434)
++=|+.+.|+.++. +| |--..+-.+||++.|+|+.+.
T Consensus 234 g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 34488888887665 55 555567889999999999766
No 176
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=82.00 E-value=31 Score=29.37 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=28.7
Q ss_pred HHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCC
Q 046033 9 ALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLP 53 (434)
Q Consensus 9 ~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~ 53 (434)
.|+..|+++||+|+++|.....+.-...- .|++.+.++.|
T Consensus 25 ~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y-----~gv~l~~i~~~ 64 (185)
T PF09314_consen 25 ELAPRLVSKGIDVTVYCRSDYYPYKEFEY-----NGVRLVYIPAP 64 (185)
T ss_pred HHHHHHhcCCceEEEEEccCCCCCCCccc-----CCeEEEEeCCC
Confidence 57788889999999999876654333311 68888888544
No 177
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=81.88 E-value=6.4 Score=35.29 Aligned_cols=22 Identities=18% Similarity=0.159 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCCC
Q 046033 7 YLALAKKLSQQNFHIYFCSTPI 28 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~ 28 (434)
+-.|+++|+++||+|+++++-.
T Consensus 22 ~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 22 VGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHhcCCeEEEEEccc
Confidence 4578999999999999998764
No 178
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=80.51 E-value=8.5 Score=29.83 Aligned_cols=84 Identities=23% Similarity=0.252 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAA 85 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
-++++|+.|.+.|++|. +++...+.+.+ .|+....+... .+.... +
T Consensus 14 ~~~~~a~~l~~~G~~i~--aT~gTa~~L~~-------~gi~~~~v~~~---~~~~~~----------~------------ 59 (116)
T cd01423 14 ELLPTAQKLSKLGYKLY--ATEGTADFLLE-------NGIPVTPVAWP---SEEPQN----------D------------ 59 (116)
T ss_pred hHHHHHHHHHHCCCEEE--EccHHHHHHHH-------cCCCceEeeec---cCCCCC----------C------------
Confidence 36789999999999983 56667777777 66766554111 110000 0
Q ss_pred HHHHHHHHhhcCCCEEEEcCC---------CchHHHHHHHcCCcEEE
Q 046033 86 KPAFCNVLETLKPTLVIYDLF---------QPWAAEAAYQHDIAAVA 123 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d~~---------~~~~~~~A~~~giP~v~ 123 (434)
.+.+.+++++.++|+||..+. .+..-..|-.+|||+++
T Consensus 60 ~~~i~~~i~~~~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 KPSLRELLAEGKIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred chhHHHHHHcCCceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 145667888889999998532 24456778889999973
No 179
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=78.74 E-value=10 Score=32.33 Aligned_cols=91 Identities=21% Similarity=0.270 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHhC--CCEEEEEeCC-CchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHH
Q 046033 2 GHITPYLALAKKLSQQ--NFHIYFCSTP-INLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTL 78 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~--Gh~V~~~~~~-~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
|-++-+.+|+++|.++ |+.|.+-++. ...+.+.+.. +..+....+|. |...
T Consensus 32 GE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~----~~~v~~~~~P~--------------------D~~~-- 85 (186)
T PF04413_consen 32 GEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLL----PDRVDVQYLPL--------------------DFPW-- 85 (186)
T ss_dssp HHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-----GGG-SEEE-----------------------SSHH--
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhC----CCCeEEEEeCc--------------------cCHH--
Confidence 4567788999999987 8998877653 4444444311 01121111211 1211
Q ss_pred HHHHHHhHHHHHHHHhhcCCCEEEEcCCC--chHHHHHHHcCCcEEEEecc
Q 046033 79 IEAFDAAKPAFCNVLETLKPTLVIYDLFQ--PWAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~pDlVi~d~~~--~~~~~~A~~~giP~v~~~~~ 127 (434)
.....++.++||++|.--.. +.-+..|++.|||++.++.-
T Consensus 86 ---------~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 86 ---------AVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp ---------HHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEEE-
T ss_pred ---------HHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEeee
Confidence 23357778899988765333 44466777889999987643
No 180
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=78.22 E-value=54 Score=29.88 Aligned_cols=80 Identities=29% Similarity=0.476 Sum_probs=49.7
Q ss_pred CCcEEEecccCHH---HHhcccCcceEEec---cCcc-hHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeeccccc
Q 046033 303 NKGMVVQGWAPQA---KILGHGSIGGFISH---CGWG-STVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEI 375 (434)
Q Consensus 303 ~~~v~~~~~~p~~---~il~~~~~~~~I~h---gG~~-s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~ 375 (434)
..++.+..+++.. .++..+++ ++.. .|.| ++.||+++|+|+|..... .....+...+.|....
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~~~g~~~~---- 325 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDGETGLLVP---- 325 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCCCceEecC----
Confidence 3567777888832 34444444 6655 3554 459999999999777443 2222222222466332
Q ss_pred CCcccHHHHHHHHHHHhcc
Q 046033 376 NQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 376 ~~~~~~~~l~~~v~~ll~~ 394 (434)
..+.+++..++..++++
T Consensus 326 --~~~~~~~~~~i~~~~~~ 342 (381)
T COG0438 326 --PGDVEELADALEQLLED 342 (381)
T ss_pred --CCCHHHHHHHHHHHhcC
Confidence 11689999999999983
No 181
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=78.04 E-value=19 Score=31.95 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=24.2
Q ss_pred CCEEE-Ec-CCCchHHHHHHHcCCcEEEEecchH
Q 046033 98 PTLVI-YD-LFQPWAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 98 pDlVi-~d-~~~~~~~~~A~~~giP~v~~~~~~~ 129 (434)
||+++ .| ...-.|+.=|.++|||+|.+.-+..
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 99875 66 4445778889999999998875543
No 182
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=76.48 E-value=19 Score=33.21 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=37.5
Q ss_pred cceEEeccCcchHHHHHHh----CCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 323 IGGFISHCGWGSTVEGIMY----GVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~~----GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
++++|+-||=||+++++.. ++|++.+-.. .+|.-. ..+++++.+++.+++++
T Consensus 64 ~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~G-------------~lGFL~-------~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 64 ADLAVVLGGDGTMLGIGRQLAPYGVPLIGINHG-------------RLGFIT-------DIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC-------------Cccccc-------cCCHHHHHHHHHHHHcC
Confidence 4559999999999999774 6798887321 123222 35778888888888874
No 183
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=76.39 E-value=13 Score=33.03 Aligned_cols=97 Identities=18% Similarity=0.233 Sum_probs=50.5
Q ss_pred CCceEEEEecCccc---CCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCC--CCcEEEecccCH
Q 046033 240 PSSVVYVSFGSEYF---LSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGN--NKGMVVQGWAPQ 314 (434)
Q Consensus 240 ~~~vV~vs~Gs~~~---~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~v~~~~~~p~ 314 (434)
+++.|.+..|+... ++.+.+.++++.+.+.+..+++..+.. . .. ++..++..+. ...+.+.+-...
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~-~----~~----~~~~~~~~~~~~~~~~~~~~~~~l 174 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPE-E----QE----KEIADQIAAGLQNPVINLAGKTSL 174 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSH-H----HH----HHHHHHHHTTHTTTTEEETTTS-H
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccch-H----HH----HHHHHHHHHhcccceEeecCCCCH
Confidence 45688888887553 667889999999988775544332211 1 00 0111111001 113333332222
Q ss_pred ---HHHhcccCcceEEeccCcchHHHHHHhCCcEEec
Q 046033 315 ---AKILGHGSIGGFISHCGWGSTVEGIMYGVPIIAV 348 (434)
Q Consensus 315 ---~~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~ 348 (434)
..++.++++ +|+. ..|.+.=|.+.|+|+|.+
T Consensus 175 ~e~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 175 RELAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 366676665 8876 568899999999999988
No 184
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=76.22 E-value=20 Score=32.20 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhh
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMS 34 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~ 34 (434)
..+|+++|+. +|+|+++.+...+.-.-
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~Sg~g 42 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRSASS 42 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCcccc
Confidence 5678888865 68999998887766543
No 185
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.56 E-value=6.8 Score=35.52 Aligned_cols=52 Identities=17% Similarity=0.145 Sum_probs=36.8
Q ss_pred cceEEeccCcchHHHHHH------hCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 323 IGGFISHCGWGSTVEGIM------YGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~------~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
++++|+-||=||++.|+. .++|++.+... .+|.-. ..+++++.+.+.+++++
T Consensus 36 ~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G-------------~lGFL~-------~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG-------------HLGFYT-------DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC-------------Cceecc-------cCCHHHHHHHHHHHHcC
Confidence 456999999999999986 48899888321 122222 24677788888888773
No 186
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=74.43 E-value=14 Score=37.32 Aligned_cols=76 Identities=11% Similarity=0.177 Sum_probs=44.1
Q ss_pred HHHhcccCcceEEe---ccCc-chHHHHHHhCCcEEeccCCC-ChhhHHHHHHhh-ceeeeecccccCC--cccHHHHHH
Q 046033 315 AKILGHGSIGGFIS---HCGW-GSTVEGIMYGVPIIAVPMVL-DQLFNAKMVADI-GVGLEVPRDEINQ--RVRKEELAR 386 (434)
Q Consensus 315 ~~il~~~~~~~~I~---hgG~-~s~~eal~~GvP~v~~P~~~-dq~~na~~~~~~-G~g~~~~~~~~~~--~~~~~~l~~ 386 (434)
..++..+++ +|. +=|+ -+++||+++|+|+|.....+ ..... ..+... ..|+.+.... .. .-+.+++++
T Consensus 469 ~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~-~~~~~e~v~~La~ 544 (590)
T cd03793 469 EEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRR-FKSPDESVQQLTQ 544 (590)
T ss_pred HHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCC-ccchHHHHHHHHH
Confidence 355554444 775 3455 48999999999999986532 22111 111111 2566665211 11 135678888
Q ss_pred HHHHHhcc
Q 046033 387 VFKQVVEQ 394 (434)
Q Consensus 387 ~v~~ll~~ 394 (434)
++.++++.
T Consensus 545 ~m~~~~~~ 552 (590)
T cd03793 545 YMYEFCQL 552 (590)
T ss_pred HHHHHhCC
Confidence 88888863
No 187
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=74.14 E-value=31 Score=31.07 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=21.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
..+|+++|.+.| +|+++.+...+.-.-.
T Consensus 21 i~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ 48 (257)
T PRK13932 21 IHVLAASMKKIG-RVTVVAPAEPHSGMSH 48 (257)
T ss_pred HHHHHHHHHhCC-CEEEEcCCCCCCCCcc
Confidence 567899998888 7998888766665543
No 188
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=73.92 E-value=38 Score=30.69 Aligned_cols=27 Identities=7% Similarity=-0.023 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhh
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMS 34 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~ 34 (434)
+.+|+++|...| +|+++.+...+.-.-
T Consensus 16 i~aL~~al~~~g-~V~VvAP~~eqSg~g 42 (266)
T PRK13934 16 LRLLYEFVSPLG-EVDVVAPETPKSATG 42 (266)
T ss_pred HHHHHHHHHhCC-cEEEEccCCCCcccc
Confidence 567899998887 899888876665544
No 189
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=73.76 E-value=40 Score=30.30 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
..+|+++|+.. |+|+++.+...+.-+-.
T Consensus 16 i~aL~~~l~~~-~~V~VvAP~~~qSg~g~ 43 (250)
T PRK00346 16 IRALAEALREL-ADVTVVAPDRERSGASH 43 (250)
T ss_pred HHHHHHHHHhC-CCEEEEeCCCCCcCCcc
Confidence 56789999988 79999998877665544
No 190
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=72.61 E-value=18 Score=35.66 Aligned_cols=36 Identities=25% Similarity=0.159 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
.++.+.++..+||++|... ....+|+++|||++.+.
T Consensus 367 ~e~~~~i~~~~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 367 WHLRSLLFTEPVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred HHHHHHHhhcCCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 4556778888999999995 36899999999998765
No 191
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=72.02 E-value=61 Score=27.52 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=32.2
Q ss_pred CCcEEeccC----CCCh---hhHHHHHHhhceeeeecccc--------cCCcccHHHHHHHHHHHhc
Q 046033 342 GVPIIAVPM----VLDQ---LFNAKMVADIGVGLEVPRDE--------INQRVRKEELARVFKQVVE 393 (434)
Q Consensus 342 GvP~v~~P~----~~dq---~~na~~~~~~G~g~~~~~~~--------~~~~~~~~~l~~~v~~ll~ 393 (434)
++|++++|. .+.. ..|..++.+.|+=+.-+... +.+-.+.+++.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 899999995 2333 56677777777554443210 1223466777777777665
No 192
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=71.79 E-value=41 Score=30.11 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
..+|+++|+..| +|+++.+...+..+-.
T Consensus 16 i~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ 43 (244)
T TIGR00087 16 IRALYQALKELG-EVTVVAPARQRSGTGH 43 (244)
T ss_pred HHHHHHHHHhCC-CEEEEeCCCCcccccc
Confidence 567899999888 8999998877766554
No 193
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=71.55 E-value=13 Score=30.70 Aligned_cols=91 Identities=20% Similarity=0.184 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHH
Q 046033 3 HITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAF 82 (434)
Q Consensus 3 H~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (434)
-..-.+.++..|.+.|+.|-=+-++.-++--.. .||+.+++... .-.-+... ......-.-+......+
T Consensus 18 KtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR-------~GF~Ivdl~tg-~~~~la~~---~~~~~rvGkY~V~v~~l 86 (179)
T COG1618 18 KTTLVLKIAEKLREKGYKVGGFITPEVREGGKR-------IGFKIVDLATG-EEGILARV---GFSRPRVGKYGVNVEGL 86 (179)
T ss_pred HHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE-------eeeEEEEccCC-ceEEEEEc---CCCCcccceEEeeHHHH
Confidence 345578899999999999987777766666666 78888887311 00001111 11111111111222222
Q ss_pred H-HhHHHHHHHHhhcCCCEEEEcCC
Q 046033 83 D-AAKPAFCNVLETLKPTLVIYDLF 106 (434)
Q Consensus 83 ~-~~~~~~~~~l~~~~pDlVi~d~~ 106 (434)
. -..+.++++++. .|+||.|-.
T Consensus 87 e~i~~~al~rA~~~--aDvIIIDEI 109 (179)
T COG1618 87 EEIAIPALRRALEE--ADVIIIDEI 109 (179)
T ss_pred HHHhHHHHHHHhhc--CCEEEEecc
Confidence 2 345666777665 899999943
No 194
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=70.75 E-value=45 Score=29.99 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=20.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
..+|+++|++ +|+|+++.+...+.-.-.
T Consensus 16 i~aL~~~l~~-~~~V~VvAP~~~qSg~g~ 43 (253)
T PRK13935 16 IIILAEYLSE-KHEVFVVAPDKERSATGH 43 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCccccc
Confidence 4678888864 689999988876665544
No 195
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.62 E-value=9.7 Score=35.35 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=38.7
Q ss_pred CcceEEeccCcchHHHHHHh----CCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 322 SIGGFISHCGWGSTVEGIMY----GVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 322 ~~~~~I~hgG~~s~~eal~~----GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
.++++|+=||=||++.|+.. ++|++.+-.. .+|.-. ..+++++.+++.+++++
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~G-------------~lGFLt-------~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLAPCGIPLLTINTG-------------HLGFLT-------EAYLNQLDEAIDQVLAG 124 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeCC-------------CCcccc-------cCCHHHHHHHHHHHHcC
Confidence 35669999999999999775 7899988321 123222 25678888999998874
No 196
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.29 E-value=11 Score=34.77 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=37.0
Q ss_pred cceEEeccCcchHHHHHH----hCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 323 IGGFISHCGWGSTVEGIM----YGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~----~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
++++|+-||-||++.|+. .++|++.+-... +|.- -..+++++.+++.+++++
T Consensus 65 ~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFL-------t~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 65 SDFLISLGGDGTLISLCRKAAEYDKFVLGIHAGH-------------LGFL-------TDITVDEAEKFFQAFFQG 120 (287)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCcEEEEeCCC-------------cccC-------CcCCHHHHHHHHHHHHcC
Confidence 455999999999998866 378998883211 2322 225678888888888874
No 197
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=68.94 E-value=45 Score=29.93 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCEEEEc--CCCc----hHHHHHHHcCCcEEEEec
Q 046033 87 PAFCNVLETLKPTLVIYD--LFQP----WAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d--~~~~----~~~~~A~~~giP~v~~~~ 126 (434)
..+.+++++.+.++||=- +|.. .+..+++.+|||++.+..
T Consensus 55 ~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 55 EGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLER 100 (248)
T ss_pred HHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 345577888999998832 3321 345778889999998774
No 198
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=68.38 E-value=36 Score=33.47 Aligned_cols=35 Identities=11% Similarity=0.029 Sum_probs=29.0
Q ss_pred HHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 88 AFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 88 ~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
++.+++++.+||++|.+.. ...+|+++|||++.+.
T Consensus 364 ~l~~~i~~~~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 DLEDLACAAGADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred HHHHHHhhcCCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 4567888889999999954 6889999999998654
No 199
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=68.25 E-value=7.3 Score=38.38 Aligned_cols=88 Identities=19% Similarity=0.208 Sum_probs=51.1
Q ss_pred chHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHH-----HH
Q 046033 333 GSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAK-----EL 407 (434)
Q Consensus 333 ~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~-----~l 407 (434)
-++.||+++|+|++..-..+ -+..++..-.|..+++ +.-....+++++.++.+ |++++.++. ++
T Consensus 380 iv~IEAMa~glPvvAt~~GG----P~EiV~~~~tG~l~dp----~~e~~~~~a~~~~kl~~---~p~l~~~~~~~G~~rV 448 (495)
T KOG0853|consen 380 IVPIEAMACGLPVVATNNGG----PAEIVVHGVTGLLIDP----GQEAVAELADALLKLRR---DPELWARMGKNGLKRV 448 (495)
T ss_pred ceeHHHHhcCCCEEEecCCC----ceEEEEcCCcceeeCC----chHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHH
Confidence 37899999999999984432 2222333346666653 11223369999999999 565544432 33
Q ss_pred HHHHHhcc-hHHHHHHHHHHHhhhc
Q 046033 408 SESIKKKG-DDEEINVVEKLLQLVK 431 (434)
Q Consensus 408 ~~~~~~~~-~~~~~~~ve~l~~~~~ 431 (434)
.+++...- ..+++.++.+..++.+
T Consensus 449 ~e~fs~~~~~~ri~~~~~~~~~~~~ 473 (495)
T KOG0853|consen 449 KEMFSWQHYSERIASVLGKYLQWEK 473 (495)
T ss_pred HHHHhHHHHHHHHHHHhHhcCCccc
Confidence 33343333 5556666655544443
No 200
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=66.92 E-value=35 Score=32.45 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=25.3
Q ss_pred HhcccCcceEEeccCcch---HHHHHHhCCcEEecc
Q 046033 317 ILGHGSIGGFISHCGWGS---TVEGIMYGVPIIAVP 349 (434)
Q Consensus 317 il~~~~~~~~I~hgG~~s---~~eal~~GvP~v~~P 349 (434)
++..-.-+++|++||+-| ...|...|+|.++.=
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 344333445999999986 899999999998863
No 201
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=66.86 E-value=32 Score=26.98 Aligned_cols=22 Identities=9% Similarity=0.314 Sum_probs=16.7
Q ss_pred HHhHHHHHHHHhhcCCCEEEEc
Q 046033 83 DAAKPAFCNVLETLKPTLVIYD 104 (434)
Q Consensus 83 ~~~~~~~~~~l~~~~pDlVi~d 104 (434)
..+.+.+.+++++.+||+|++-
T Consensus 86 ~~~~~~l~~~i~~~~p~~V~t~ 107 (128)
T PF02585_consen 86 EELVRDLEDLIREFRPDVVFTP 107 (128)
T ss_dssp HHHHHHHHHHHHHH-ESEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEC
Confidence 3446678889999999999876
No 202
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=65.66 E-value=66 Score=29.10 Aligned_cols=98 Identities=13% Similarity=0.274 Sum_probs=50.5
Q ss_pred HHHHHHHHHhC---CCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHH
Q 046033 7 YLALAKKLSQQ---NFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFD 83 (434)
Q Consensus 7 ~l~lA~~L~~~---Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (434)
+.+|+++|... |++|+++.++..+.-+-... +....++...+. + + ...-.+-+.+..
T Consensus 16 l~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghai--T~~~pl~~~~~~-----~----~-~yav~GTPaDCV-------- 75 (261)
T PRK13931 16 LEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCI--SYTHPMMIAELG-----P----R-RFAAEGSPADCV-------- 75 (261)
T ss_pred HHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccc--cCCCCeEEEEeC-----C----C-eEEEcCchHHHH--------
Confidence 45667777653 47999998887666554321 111334444331 0 1 000001111111
Q ss_pred HhHHHHHHHHhhcCCCEEEEc----------CCCc---hHHHHHHHcCCcEEEEec
Q 046033 84 AAKPAFCNVLETLKPTLVIYD----------LFQP---WAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 84 ~~~~~~~~~l~~~~pDlVi~d----------~~~~---~~~~~A~~~giP~v~~~~ 126 (434)
.=.+..++...+||+||+- .+.. +|+.-|..+|||.+.+|.
T Consensus 76 --~lal~~~~~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 76 --LAALYDVMKDAPPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred --HHHHHHhcCCCCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 1122334433589999985 2222 344555568999999986
No 203
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.51 E-value=12 Score=34.52 Aligned_cols=52 Identities=19% Similarity=0.187 Sum_probs=38.7
Q ss_pred cceEEeccCcchHHHHHH----hCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 323 IGGFISHCGWGSTVEGIM----YGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~----~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
++++|+=||=||++.|+. .++|++.+-... +|.-.. ++++++.+++.+++++
T Consensus 69 ~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFL~~-------~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 69 CDLVAVLGGDGTFLSVAREIAPRAVPIIGINQGH-------------LGFLTQ-------IPREYMTDKLLPVLEG 124 (296)
T ss_pred CCEEEEECCcHHHHHHHHHhcccCCCEEEEecCC-------------CeEeec-------cCHHHHHHHHHHHHcC
Confidence 455999999999999975 378999884321 343332 5788899999999884
No 204
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.18 E-value=13 Score=34.47 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=39.2
Q ss_pred CcceEEeccCcchHHHHHHh----CCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 322 SIGGFISHCGWGSTVEGIMY----GVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 322 ~~~~~I~hgG~~s~~eal~~----GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
.++++|+=||=||++.|+.. ++|++.+.... +|.-. ...++++.+++.+++++
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G~-------------lGFL~-------~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELARAADVPVLGVNLGH-------------VGFLA-------EAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhccCCCcEEEEecCC-------------Cceec-------cCCHHHHHHHHHHHHcC
Confidence 34569999999999998764 88999884321 33333 25688888999999884
No 205
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.88 E-value=14 Score=34.07 Aligned_cols=52 Identities=21% Similarity=0.312 Sum_probs=38.6
Q ss_pred cceEEeccCcchHHHHHH----hCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 323 IGGFISHCGWGSTVEGIM----YGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~----~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
++++|+=||=||++.|+. .++|++.+-... +|.-. ..+++++.+++.+++++
T Consensus 65 ~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~G~-------------lGFLt-------~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 65 ADMVISIGGDGTFLRTATYVGNSNIPILGINTGR-------------LGFLA-------TVSKEEIEETIDELLNG 120 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCCEEEEecCC-------------CCccc-------ccCHHHHHHHHHHHHcC
Confidence 455999999999999977 378998883311 33222 35788899999999884
No 206
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=64.01 E-value=34 Score=33.70 Aligned_cols=87 Identities=11% Similarity=0.100 Sum_probs=58.2
Q ss_pred CCcEEEec-ccC-H-HHHhcccCcceEEeccC--cchHHHHHHhCCcEEeccCCCC-hhhHHHHHHhhceeeeecccccC
Q 046033 303 NKGMVVQG-WAP-Q-AKILGHGSIGGFISHCG--WGSTVEGIMYGVPIIAVPMVLD-QLFNAKMVADIGVGLEVPRDEIN 376 (434)
Q Consensus 303 ~~~v~~~~-~~p-~-~~il~~~~~~~~I~hgG--~~s~~eal~~GvP~v~~P~~~d-q~~na~~~~~~G~g~~~~~~~~~ 376 (434)
.+|+...+ +.+ . ..++..|++=+-|+||. ..++.||+.+|+|++..-.... +..... |..+..
T Consensus 327 y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~-------g~l~~~---- 395 (438)
T TIGR02919 327 YDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIAS-------ENIFEH---- 395 (438)
T ss_pred cCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcccccC-------CceecC----
Confidence 35666554 555 2 37888888877778876 4799999999999998854322 111111 444432
Q ss_pred CcccHHHHHHHHHHHhcccchH-HHHHHHH
Q 046033 377 QRVRKEELARVFKQVVEQEEGQ-QIKRKAK 405 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~~~~~-~~~~~a~ 405 (434)
-+.+++.++|.++|. ++ .+.++..
T Consensus 396 --~~~~~m~~~i~~lL~---d~~~~~~~~~ 420 (438)
T TIGR02919 396 --NEVDQLISKLKDLLN---DPNQFRELLE 420 (438)
T ss_pred --CCHHHHHHHHHHHhc---CHHHHHHHHH
Confidence 368999999999999 55 3444443
No 207
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=64.00 E-value=92 Score=30.96 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=66.7
Q ss_pred cccCHH---HHhcccCcceEE--eccCcchHH-HHHHhCCc----EEeccCCCChhhHHHHHHhhceeeeecccccCCcc
Q 046033 310 GWAPQA---KILGHGSIGGFI--SHCGWGSTV-EGIMYGVP----IIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRV 379 (434)
Q Consensus 310 ~~~p~~---~il~~~~~~~~I--~hgG~~s~~-eal~~GvP----~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~ 379 (434)
.-++.. +++..+++ ++| ..-|+|.+. |-+++..| ++++ -..|...+.++-++.+++ .
T Consensus 338 ~~~~~~~l~alyr~ADv-~lVTplRDGMNLVAkEyva~q~~~~~GvLIL------SefAGaA~~L~~AllVNP------~ 404 (474)
T PRK10117 338 QHFDRKLLMKIFRYSDV-GLVTPLRDGMNLVAKEYVAAQDPANPGVLVL------SQFAGAANELTSALIVNP------Y 404 (474)
T ss_pred CCCCHHHHHHHHHhccE-EEecccccccccccchheeeecCCCCccEEE------ecccchHHHhCCCeEECC------C
Confidence 345665 44456666 344 345887665 66666543 2333 334555556655777764 6
Q ss_pred cHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHhh
Q 046033 380 RKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLLQL 429 (434)
Q Consensus 380 ~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~~~ 429 (434)
+.++++++|.+.|+-. ..+-+++.++|.+.+.... ..=+..+++.|...
T Consensus 405 d~~~~A~Ai~~AL~Mp-~~Er~~R~~~l~~~v~~~dv~~W~~~fL~~L~~~ 454 (474)
T PRK10117 405 DRDEVAAALDRALTMP-LAERISRHAEMLDVIVKNDINHWQECFISDLKQI 454 (474)
T ss_pred CHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHh
Confidence 8999999999999821 2455777777777777766 44466777766554
No 208
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=63.64 E-value=21 Score=30.24 Aligned_cols=38 Identities=13% Similarity=0.011 Sum_probs=30.2
Q ss_pred HHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEEe
Q 046033 88 AFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 88 ~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~ 125 (434)
.+.+.++..++|.|++= .-...+..+|.++|+|+|..-
T Consensus 44 ~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vR 83 (179)
T COG0503 44 ELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVR 83 (179)
T ss_pred HHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEEE
Confidence 66677777789999865 344678999999999999754
No 209
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.51 E-value=16 Score=33.71 Aligned_cols=52 Identities=15% Similarity=0.203 Sum_probs=37.8
Q ss_pred cceEEeccCcchHHHHHH----hCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 323 IGGFISHCGWGSTVEGIM----YGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~----~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
++++|+=||=||++.|+. .++|++.+-... +|.- ..++++++.+++++++++
T Consensus 64 ~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-------------lGFl-------~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 64 ADLAIVVGGDGNMLGAARVLARYDIKVIGINRGN-------------LGFL-------TDLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCeEEEEECCC-------------CCcc-------cccCHHHHHHHHHHHHcC
Confidence 456999999999999975 378988883311 2322 235688899999999884
No 210
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=61.72 E-value=1e+02 Score=33.58 Aligned_cols=103 Identities=9% Similarity=0.046 Sum_probs=60.5
Q ss_pred cccCHH---HHhcccCcceEE---eccCcchH-HHHHHhCC---cEEeccCCCChhhHHHHHHhhc-eeeeecccccCCc
Q 046033 310 GWAPQA---KILGHGSIGGFI---SHCGWGST-VEGIMYGV---PIIAVPMVLDQLFNAKMVADIG-VGLEVPRDEINQR 378 (434)
Q Consensus 310 ~~~p~~---~il~~~~~~~~I---~hgG~~s~-~eal~~Gv---P~v~~P~~~dq~~na~~~~~~G-~g~~~~~~~~~~~ 378 (434)
..++.. +++..++| ++ ..-|+|.+ .|+++++. -+++++.+. ...+.+| -|+.+++
T Consensus 446 ~~l~~eeL~AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa------Gaa~~L~~~AllVNP------ 511 (934)
T PLN03064 446 RSLDFHALCALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA------GAAQSLGAGAILVNP------ 511 (934)
T ss_pred cCCCHHHHHHHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCCC------chHHHhCCceEEECC------
Confidence 345665 45555666 55 34577654 59999954 222333322 2222334 4566664
Q ss_pred ccHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHh
Q 046033 379 VRKEELARVFKQVVE-QEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLLQ 428 (434)
Q Consensus 379 ~~~~~l~~~v~~ll~-~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~~ 428 (434)
.+.++++++|.++|+ + ..+.+++.+++.+.+.... ..=+..++.+|..
T Consensus 512 ~D~~~vA~AI~~AL~M~--~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~ 561 (934)
T PLN03064 512 WNITEVAASIAQALNMP--EEEREKRHRHNFMHVTTHTAQEWAETFVSELND 561 (934)
T ss_pred CCHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHH
Confidence 589999999999997 3 3445666666777766655 3335555555544
No 211
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=61.38 E-value=67 Score=26.58 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=51.4
Q ss_pred chhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEE
Q 046033 228 DTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMV 307 (434)
Q Consensus 228 ~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~ 307 (434)
-.++-++|.+.. ...|+.|.. .......++..+.+-+++-++...... +.. ...-..
T Consensus 20 A~~lg~~La~~g---~~lv~Gg~~-----GlM~a~a~ga~~~gg~viGVlp~~l~~--------~~~-------~~~~~i 76 (159)
T TIGR00725 20 AYRLGKELAKKG---HILINGGRT-----GVMEAVSKGAREAGGLVVGILPDEDFA--------GNP-------YLTIKV 76 (159)
T ss_pred HHHHHHHHHHCC---CEEEcCCch-----hHHHHHHHHHHHCCCeEEEECChhhcc--------CCC-------CceEEE
Confidence 345566676543 455553332 345556666666666666554322100 000 111122
Q ss_pred Eecc-cCHHHHhc-ccCcceEEeccCcchHH---HHHHhCCcEEeccC
Q 046033 308 VQGW-APQAKILG-HGSIGGFISHCGWGSTV---EGIMYGVPIIAVPM 350 (434)
Q Consensus 308 ~~~~-~p~~~il~-~~~~~~~I~hgG~~s~~---eal~~GvP~v~~P~ 350 (434)
...+ .+...++. .++ ..++--||.||+- |++.+++|+++++.
T Consensus 77 ~~~~~~~Rk~~m~~~sd-a~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 77 KTGMNFARNFILVRSAD-VVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred ECCCcchHHHHHHHHCC-EEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 2333 33444444 344 3455678888765 56889999999874
No 212
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.55 E-value=19 Score=32.83 Aligned_cols=52 Identities=19% Similarity=0.361 Sum_probs=37.7
Q ss_pred cceEEeccCcchHHHHHH-hCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 323 IGGFISHCGWGSTVEGIM-YGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~-~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
++++|+=||-||++.++. ...|++.+-.. .+|.-. ..+++++.+++++++++
T Consensus 53 ~D~vi~lGGDGT~L~a~~~~~~PilGIN~G-------------~lGFL~-------~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 53 ADVIITIGGDGTILRTLQRAKGPILGINMG-------------GLGFLT-------EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCEEEEEcCcHHHHHHHHHcCCCEEEEECC-------------CCccCc-------ccCHHHHHHHHHHHHcC
Confidence 456999999999999987 45688877321 123222 25788999999999884
No 213
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.54 E-value=1.4e+02 Score=27.38 Aligned_cols=112 Identities=15% Similarity=0.171 Sum_probs=61.5
Q ss_pred CcEEEecccCHH---HHhcccCcceEEeccCcchHHHHHHhCCcEE--eccCCCChhhHHHHHHhh--ceeeeecccccC
Q 046033 304 KGMVVQGWAPQA---KILGHGSIGGFISHCGWGSTVEGIMYGVPII--AVPMVLDQLFNAKMVADI--GVGLEVPRDEIN 376 (434)
Q Consensus 304 ~~v~~~~~~p~~---~il~~~~~~~~I~hgG~~s~~eal~~GvP~v--~~P~~~dq~~na~~~~~~--G~g~~~~~~~~~ 376 (434)
-.+.+.+|+||+ .+|..|++-+| . |-.|+.-|..+|+|.+ +.|+..+ ...+.++.. ....-+++
T Consensus 238 lrvvklPFvpqddyd~LL~lcD~n~V--R-GEDSFVRAq~agkPflWHIYpQden--tHl~KLeaFldky~~~lp~---- 308 (370)
T COG4394 238 LRVVKLPFVPQDDYDELLWLCDFNLV--R-GEDSFVRAQLAGKPFLWHIYPQDEN--THLAKLEAFLDKYCPFLPP---- 308 (370)
T ss_pred eEEEEecCCcHhHHHHHHHhccccee--e-cchHHHHHHHcCCCcEEEecCCccc--cHHHHHHHHHHHhCCCCCH----
Confidence 356677999997 77777777433 3 7789999999999996 3343322 222333321 11211221
Q ss_pred CcccHHHHHHHHHHHhccc---c-------hHHHHHHHHHHHHHHHhcc--hHHHHHHHHHH
Q 046033 377 QRVRKEELARVFKQVVEQE---E-------GQQIKRKAKELSESIKKKG--DDEEINVVEKL 426 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~~---~-------~~~~~~~a~~l~~~~~~~~--~~~~~~~ve~l 426 (434)
-+.+.++..-...=.++ + -+..|+.|++++..+-..+ .+.++.++|.+
T Consensus 309 --~~a~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek~ 368 (370)
T COG4394 309 --NTAKALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEKI 368 (370)
T ss_pred --HHHHHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHHh
Confidence 02333332222111111 0 2467888888888776655 55555666554
No 214
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.52 E-value=20 Score=32.49 Aligned_cols=53 Identities=9% Similarity=0.181 Sum_probs=37.3
Q ss_pred cceEEeccCcchHHHHHHh-----CCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 323 IGGFISHCGWGSTVEGIMY-----GVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~~-----GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
++++|+=||=||++.|+.. .+|++.+...+ .+|.-- ..+++++.+++.+++++
T Consensus 40 ~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGFL~-------~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGFYC-------DFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeEcc-------cCCHHHHHHHHHHHHcC
Confidence 4559999999999999874 56877773311 133222 25778888899888874
No 215
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=60.49 E-value=17 Score=30.92 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCEEEEEeCCC
Q 046033 8 LALAKKLSQQNFHIYFCSTPI 28 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~ 28 (434)
.+||+++..+||+|+++.++.
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 578999999999999999984
No 216
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.47 E-value=19 Score=32.45 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=38.1
Q ss_pred CcceEEeccCcchHHHHHH-hCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 322 SIGGFISHCGWGSTVEGIM-YGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 322 ~~~~~I~hgG~~s~~eal~-~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
+++++|+=||-||++.|+. .++|++.+-... .|.-. ..+++++.+++.+++++
T Consensus 41 ~~d~vi~iGGDGT~L~a~~~~~~Pilgin~G~-------------lGfl~-------~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TADLIIVVGGDGTVLKAAKKVGTPLVGFKAGR-------------LGFLS-------SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCEEEEECCcHHHHHHHHHcCCCEEEEeCCC-------------Ccccc-------ccCHHHHHHHHHHHHcC
Confidence 3456999999999999876 588888873211 33333 25678888888888874
No 217
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=60.24 E-value=1.1e+02 Score=28.73 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=24.7
Q ss_pred CCCEEE-Ec-CCCchHHHHHHHcCCcEEEEecch
Q 046033 97 KPTLVI-YD-LFQPWAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 97 ~pDlVi-~d-~~~~~~~~~A~~~giP~v~~~~~~ 128 (434)
.||+|| .| .....++.=|.++|||+|.+.-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 599886 45 445678888999999999986544
No 218
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=59.19 E-value=1.2e+02 Score=26.23 Aligned_cols=149 Identities=11% Similarity=0.032 Sum_probs=70.8
Q ss_pred CceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHHHHhcc
Q 046033 241 SSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGH 320 (434)
Q Consensus 241 ~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~ 320 (434)
++++.|+.|.++ ...+..|.+.+..+.++.. . +.+.+.+-. ....+...........+..
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~-~----------~~~~l~~l~--~~~~i~~~~~~~~~~~l~~ 70 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISP-E----------LTENLVKLV--EEGKIRWKQKEFEPSDIVD 70 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcC-C----------CCHHHHHHH--hCCCEEEEecCCChhhcCC
Confidence 568888777654 3345556666766555421 1 111111111 1123433333233344554
Q ss_pred cCcceEEeccCcchHHHHHH----hCCcEEeccCCCCh-hhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhccc
Q 046033 321 GSIGGFISHCGWGSTVEGIM----YGVPIIAVPMVLDQ-LFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQE 395 (434)
Q Consensus 321 ~~~~~~I~hgG~~s~~eal~----~GvP~v~~P~~~dq-~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~ 395 (434)
+++ +|.--+...+.+.++ .++++-++-..... +..-..+.+-++-+.+..+. ..-.-+..+++.|.+++. +
T Consensus 71 adl--ViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G-~sP~la~~lr~~ie~~~~-~ 146 (202)
T PRK06718 71 AFL--VIAATNDPRVNEQVKEDLPENALFNVITDAESGNVVFPSALHRGKLTISVSTDG-ASPKLAKKIRDELEALYD-E 146 (202)
T ss_pred ceE--EEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCC-CChHHHHHHHHHHHHHcc-h
Confidence 444 777666555554443 56665443211111 12222233333444443211 011223567777777764 2
Q ss_pred chHHHHHHHHHHHHHHHh
Q 046033 396 EGQQIKRKAKELSESIKK 413 (434)
Q Consensus 396 ~~~~~~~~a~~l~~~~~~ 413 (434)
+-..+-+.+.++++.+++
T Consensus 147 ~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 147 SYESYIDFLYECRQKIKE 164 (202)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 235677888888888876
No 219
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=58.76 E-value=1e+02 Score=25.27 Aligned_cols=138 Identities=18% Similarity=0.185 Sum_probs=65.4
Q ss_pred eEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHHHHhcccC
Q 046033 243 VVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGS 322 (434)
Q Consensus 243 vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~ 322 (434)
.|-|-.||.+ +-+..+++...|+..+..+-+.+... ...|+.+. .++.. +..-.
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa--------HR~p~~l~-------------~~~~~---~~~~~ 55 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA--------HRTPERLL-------------EFVKE---YEARG 55 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T--------TTSHHHHH-------------HHHHH---TTTTT
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec--------cCCHHHHH-------------HHHHH---hccCC
Confidence 4556667654 55777778888877775544433321 11233221 11111 11112
Q ss_pred cceEEeccCcc----hHHHHHHhCCcEEeccCCCChhh----HHHHHHhh-ceeeeecccccCCcccHHHHHHHHHHHhc
Q 046033 323 IGGFISHCGWG----STVEGIMYGVPIIAVPMVLDQLF----NAKMVADI-GVGLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 323 ~~~~I~hgG~~----s~~eal~~GvP~v~~P~~~dq~~----na~~~~~~-G~g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
++.+|+=.|.. ++..++ .-+|+|.+|....+.. ..-.+... |+++..--= .+..+...+.-.|..+ .
T Consensus 56 ~~viIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i--~~~~nAA~~A~~ILa~-~ 131 (150)
T PF00731_consen 56 ADVIIAVAGMSAALPGVVASL-TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGI--NNGFNAALLAARILAL-K 131 (150)
T ss_dssp ESEEEEEEESS--HHHHHHHH-SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SS--THHHHHHHHHHHHHHT-T
T ss_pred CEEEEEECCCcccchhhheec-cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEc--cCchHHHHHHHHHHhc-C
Confidence 34477666643 333333 3799999998765432 22223322 665444310 1123444444444443 2
Q ss_pred ccchHHHHHHHHHHHHHHHh
Q 046033 394 QEEGQQIKRKAKELSESIKK 413 (434)
Q Consensus 394 ~~~~~~~~~~a~~l~~~~~~ 413 (434)
+++++++.+..++++++
T Consensus 132 ---d~~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 132 ---DPELREKLRAYREKMKE 148 (150)
T ss_dssp ----HHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHc
Confidence 47888888888877754
No 220
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=58.37 E-value=1.3e+02 Score=30.00 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=57.8
Q ss_pred EEecccCHH---HHhcccCcceEE--eccCcchH-HHHHHhCCc---EEeccCCCChhhHHHHHHhhc-eeeeecccccC
Q 046033 307 VVQGWAPQA---KILGHGSIGGFI--SHCGWGST-VEGIMYGVP---IIAVPMVLDQLFNAKMVADIG-VGLEVPRDEIN 376 (434)
Q Consensus 307 ~~~~~~p~~---~il~~~~~~~~I--~hgG~~s~-~eal~~GvP---~v~~P~~~dq~~na~~~~~~G-~g~~~~~~~~~ 376 (434)
++..-++.. +++..+++ ++| ...|+|.+ .|-+++..+ ++++ -..|...+.++ .++.+++
T Consensus 356 ~~~~~~~~~~~~aly~~aDv-~lvTslrDGmNLva~Eyva~q~~~~GvLiL------SefaGaa~~L~~~al~VNP---- 424 (474)
T PF00982_consen 356 YIYRSLSFEELLALYRAADV-ALVTSLRDGMNLVAKEYVACQDDNPGVLIL------SEFAGAAEQLSEAALLVNP---- 424 (474)
T ss_dssp EE-S---HHHHHHHHHH-SE-EEE--SSBS--HHHHHHHHHS-TS--EEEE------ETTBGGGGT-TTS-EEE-T----
T ss_pred EEecCCCHHHHHHHHHhhhh-EEecchhhccCCcceEEEEEecCCCCceEe------eccCCHHHHcCCccEEECC----
Confidence 343445555 55566776 344 36788755 577777665 3444 23334455566 4477765
Q ss_pred CcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHH
Q 046033 377 QRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLL 427 (434)
Q Consensus 377 ~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~ 427 (434)
.+.++++++|.+.|+=. .++-+++.+++.+.+.+.. ..=+.++++.|.
T Consensus 425 --~d~~~~A~ai~~AL~M~-~~Er~~r~~~~~~~v~~~~~~~W~~~~l~~L~ 473 (474)
T PF00982_consen 425 --WDIEEVADAIHEALTMP-PEERKERHARLREYVREHDVQWWAESFLRDLK 473 (474)
T ss_dssp --T-HHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred --CChHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhHhCCHHHHHHHHHHHhh
Confidence 68999999999999821 2345666666777776655 444666766663
No 221
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=57.71 E-value=7.4 Score=30.87 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
-++=++..|+++||+|++++++.....++-
T Consensus 15 ~alYl~~~Lk~~G~~v~Va~npAA~kLl~v 44 (139)
T PF09001_consen 15 SALYLSYKLKKKGFEVVVAGNPAALKLLEV 44 (139)
T ss_dssp HHHHHHHHHHCTTEEEEEEE-HHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEecCHHHHhHhhh
Confidence 345678999999999999999988888875
No 222
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=57.66 E-value=10 Score=29.60 Aligned_cols=22 Identities=9% Similarity=0.292 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhCCCEEEEEeCC
Q 046033 6 PYLALAKKLSQQNFHIYFCSTP 27 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~ 27 (434)
..++++.+-.+|||+|.++...
T Consensus 19 TT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 19 TTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp HHHHHHHHHHHTT-EEEEE-GG
T ss_pred hHHHHHHHHHHCCCEEEEEEcC
Confidence 4688999999999999988875
No 223
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=57.57 E-value=26 Score=29.99 Aligned_cols=42 Identities=14% Similarity=-0.071 Sum_probs=30.7
Q ss_pred hHHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEEec
Q 046033 85 AKPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 85 ~~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~~ 126 (434)
....+.+.+++.++|+|++- .-.+.|..+|.++|+|++....
T Consensus 38 i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 38 IGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred HHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 34555566667789999865 3336778899999999997653
No 224
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=56.77 E-value=1.2e+02 Score=25.43 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=38.2
Q ss_pred CcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcCCCCCceEEEEecC
Q 046033 183 CKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSRKEPSSVVYVSFGS 250 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs 250 (434)
...+++-+.++.-......+...+| .+..+|-.... -.....+++.+.+....+. +|+|++|+
T Consensus 49 ~~ifllG~~~~~~~~~~~~l~~~yP-~l~ivg~~~g~---f~~~~~~~i~~~I~~~~pd-iv~vglG~ 111 (172)
T PF03808_consen 49 KRIFLLGGSEEVLEKAAANLRRRYP-GLRIVGYHHGY---FDEEEEEAIINRINASGPD-IVFVGLGA 111 (172)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHCC-CeEEEEecCCC---CChhhHHHHHHHHHHcCCC-EEEEECCC
Confidence 4557777776655555556666665 66667644221 0112456677677655443 99999987
No 225
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.37 E-value=26 Score=32.44 Aligned_cols=52 Identities=21% Similarity=0.281 Sum_probs=38.3
Q ss_pred cceEEeccCcchHHHHHH----hCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 323 IGGFISHCGWGSTVEGIM----YGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~----~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
++.+|+=||=||+++++. .++|++.+... .+|.- ...+++++.++|.+++++
T Consensus 63 ~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-------------~lGFl-------~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 63 CDLVIVVGGDGSLLGAARALARHNVPVLGINRG-------------RLGFL-------TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-------------ccccc-------ccCCHHHHHHHHHHHHcC
Confidence 455999999999999975 37798888542 13322 235789999999999984
No 226
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=55.27 E-value=21 Score=36.05 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
.++.+.+++.+||+||.+. ....+|+++|||++.++
T Consensus 352 ~el~~~i~~~~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 352 LEVEDAIAEAAPELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHHHhcCCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 4667788888999999985 47789999999998776
No 227
>PLN02929 NADH kinase
Probab=54.95 E-value=23 Score=32.74 Aligned_cols=65 Identities=14% Similarity=0.184 Sum_probs=43.2
Q ss_pred CcceEEeccCcchHHHHHH---hCCcEEeccCCC------ChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHh
Q 046033 322 SIGGFISHCGWGSTVEGIM---YGVPIIAVPMVL------DQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVV 392 (434)
Q Consensus 322 ~~~~~I~hgG~~s~~eal~---~GvP~v~~P~~~------dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll 392 (434)
.++++|+-||=||++.|+. .++|++.+-... +++.|.-. ++.-.|.-.. .+++++.++|.+++
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r~lGfL~~-------~~~~~~~~~L~~il 135 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARRSTGHLCA-------ATAEDFEQVLDDVL 135 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cccCcccccc-------CCHHHHHHHHHHHH
Confidence 3456999999999999854 478999885532 12222211 1113554443 57899999999999
Q ss_pred cc
Q 046033 393 EQ 394 (434)
Q Consensus 393 ~~ 394 (434)
++
T Consensus 136 ~g 137 (301)
T PLN02929 136 FG 137 (301)
T ss_pred cC
Confidence 84
No 228
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=54.75 E-value=22 Score=30.04 Aligned_cols=35 Identities=23% Similarity=0.105 Sum_probs=24.0
Q ss_pred HHHhhcCCCEEEEcCCCch--HHHHHHHcCCcEEEEe
Q 046033 91 NVLETLKPTLVIYDLFQPW--AAEAAYQHDIAAVAFV 125 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~~~--~~~~A~~~giP~v~~~ 125 (434)
+.+...+||+||+...... ....-+..|||++.+.
T Consensus 63 E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 63 ELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 4555589999998643222 3444567899998875
No 229
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=54.65 E-value=21 Score=35.08 Aligned_cols=36 Identities=14% Similarity=-0.041 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
.++.+++++.+||+||.+.. ...+|+++|+|++.++
T Consensus 361 ~el~~~i~~~~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 361 WDLESLAKEEPVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred HHHHHHhhccCCCEEEECch---hHHHHHhcCCCEEEec
Confidence 46667888889999999954 5788999999998654
No 230
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=54.56 E-value=1.4e+02 Score=25.60 Aligned_cols=32 Identities=28% Similarity=0.208 Sum_probs=24.2
Q ss_pred CCCEEEEc--CCCchHHHHHHHcCCcEEEEecch
Q 046033 97 KPTLVIYD--LFQPWAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 97 ~pDlVi~d--~~~~~~~~~A~~~giP~v~~~~~~ 128 (434)
.||+||.- .-...++.=|.++|||.|.+....
T Consensus 127 ~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 127 LPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 69988654 344567788889999999987554
No 231
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=54.55 E-value=20 Score=36.10 Aligned_cols=36 Identities=8% Similarity=0.153 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
.++.+++++.+||+||.+. ....+|+++|||++.++
T Consensus 364 ~ei~~~I~~~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 364 TEVGDMIARVEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHHhcCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 4567788888999999995 46667899999998776
No 232
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=54.30 E-value=34 Score=29.09 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEe
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDL 50 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~ 50 (434)
++.+|+.|.+.|+++. +++...+.+.. .|+.+..+
T Consensus 13 l~~lAk~L~~lGf~I~--AT~GTAk~L~e-------~GI~v~~V 47 (187)
T cd01421 13 LVEFAKELVELGVEIL--STGGTAKFLKE-------AGIPVTDV 47 (187)
T ss_pred HHHHHHHHHHCCCEEE--EccHHHHHHHH-------cCCeEEEh
Confidence 5789999999999984 66678888888 78887766
No 233
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=54.24 E-value=23 Score=35.60 Aligned_cols=36 Identities=6% Similarity=-0.058 Sum_probs=29.9
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
.+++++++..+||++|.+. .+..+|+.+|||++.+.
T Consensus 427 ~~l~~~l~~~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 427 WHLRSLVFTEPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred HHHHHHHhhcCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 4566788888999999995 46889999999998765
No 234
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=54.00 E-value=24 Score=35.61 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEec
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~ 126 (434)
.++.+.+++.+||+||.+. ....+|+++|||++.++.
T Consensus 354 ~ei~~~i~~~~pdliiG~~---~er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 354 QEVADAIAALEPELVLGTQ---MERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHHHhcCCCEEEECh---HHHHHHHHcCCCEEEecC
Confidence 3667788888999999995 577789999999987764
No 235
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=53.81 E-value=37 Score=27.65 Aligned_cols=71 Identities=15% Similarity=0.214 Sum_probs=50.0
Q ss_pred ccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc---hHHHHHHHH
Q 046033 348 VPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG---DDEEINVVE 424 (434)
Q Consensus 348 ~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~---~~~~~~~ve 424 (434)
.|....+..+|+.+.+..-++..+ ..+.+.+.+.+|+.+ +++-+-.+.++++.+.+.| ...+.+++-
T Consensus 78 yPWt~~~L~aa~el~ee~eeLs~d--------eke~~~~sl~dL~~d--~PkT~vA~~rfKk~~~K~g~~v~~~~~dIlV 147 (158)
T PF10083_consen 78 YPWTENALEAANELIEEDEELSPD--------EKEQFKESLPDLTKD--TPKTKVAATRFKKILSKAGSIVGDAIRDILV 147 (158)
T ss_pred CchHHHHHHHHHHHHHHhhcCCHH--------HHHHHHhhhHHHhhc--CCccHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 466667777777777654443332 578899999999986 6888888899999988855 444555555
Q ss_pred HHHh
Q 046033 425 KLLQ 428 (434)
Q Consensus 425 ~l~~ 428 (434)
++..
T Consensus 148 dv~S 151 (158)
T PF10083_consen 148 DVAS 151 (158)
T ss_pred HHHH
Confidence 5444
No 236
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=53.45 E-value=24 Score=34.61 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
.++.++++..+||++|.+.. ...+|+++|||++.++
T Consensus 362 ~e~~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 362 FDIESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred HHHHHHHHhcCCCEEEECch---hHHHHHHcCCCEEEec
Confidence 56678888889999999954 6799999999998654
No 237
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.16 E-value=25 Score=32.19 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=35.9
Q ss_pred cceEEeccCcchHHHHHH---hCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 323 IGGFISHCGWGSTVEGIM---YGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~---~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
++++|.-||-||+++++. .++|+++++... .|.- ..++++++.+++.+++++
T Consensus 58 ~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~-------------lGFl-------~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 58 VDFIIAIGGDGTILRIEHKTKKDIPILGINMGT-------------LGFL-------TEVEPEETFFALSRLLEG 112 (277)
T ss_pred CCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC-------------CCcc-------ccCCHHHHHHHHHHHHcC
Confidence 456999999999999874 356888886532 1211 124567777888888774
No 238
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=52.62 E-value=24 Score=34.65 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEec
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~ 126 (434)
.++.+++++.+||++|.+. ....+|+++|+|++.++.
T Consensus 360 ~e~~~~i~~~~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 360 TEVGDMIARTEPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHHHHHhhCCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 4567788888999999995 356678999999987753
No 239
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=52.34 E-value=1.1e+02 Score=24.72 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhC--CCEEEEEeCCCchhhhhhhhcccCCC-CeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 5 TPYLALAKKLSQQ--NFHIYFCSTPINLQSMSQNLQEKFST-SIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 5 ~p~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~~~~~~~~~-g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
.-++.+|+.|.+. ||++ ++++...+.+.+ . |+....+ .. + +.+
T Consensus 17 ~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L~~-------~~Gi~v~~v-i~----~-~~g------------------- 62 (142)
T PRK05234 17 DDLVAWVKAHKDLLEQHEL--YATGTTGGLIQE-------ATGLDVTRL-LS----G-PLG------------------- 62 (142)
T ss_pred HHHHHHHHHHHHHhcCCEE--EEeChHHHHHHh-------ccCCeeEEE-Ec----C-CCC-------------------
Confidence 4578999999999 9995 466677777777 5 7776554 11 0 001
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEcC--CCc--------hHHHHHHHcCCcEEEEecchH
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYDL--FQP--------WAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d~--~~~--------~~~~~A~~~giP~v~~~~~~~ 129 (434)
-.+.+.+.++.-+.|+||... ... .-..+|-..|||+++......
T Consensus 63 ---g~~~i~~~I~~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~~~IP~~T~l~tA~ 117 (142)
T PRK05234 63 ---GDQQIGALIAEGKIDMLIFFRDPLTAQPHDPDVKALLRLADVWNIPVATNRATAD 117 (142)
T ss_pred ---CchhHHHHHHcCceeEEEEecCCCCCCcccchHHHHHHHHHHcCCCEEcCHHHHH
Confidence 012345677888999999853 211 224567788999997554443
No 240
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=52.15 E-value=46 Score=32.33 Aligned_cols=27 Identities=22% Similarity=0.034 Sum_probs=21.0
Q ss_pred CchHHHHHHHcCCcEEEEecchHHHHH
Q 046033 107 QPWAAEAAYQHDIAAVAFVTIAAASFS 133 (434)
Q Consensus 107 ~~~~~~~A~~~giP~v~~~~~~~~~~~ 133 (434)
..+++.+|+.+|+|+|.+........+
T Consensus 100 ~gSTA~lAk~l~~PVvLVid~~~~s~S 126 (451)
T COG1797 100 TGSTADLAKLLGAPVVLVVDASGLSRS 126 (451)
T ss_pred CCCHHHHHHHhCCCEEEEEeCcchhHH
Confidence 357899999999999998776554443
No 241
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=51.84 E-value=38 Score=31.81 Aligned_cols=46 Identities=22% Similarity=0.288 Sum_probs=31.5
Q ss_pred HHHHHhHHHHHHHHhhcCCCEEEEc-CCCc------hH---HHHHHHcCCcEEEEe
Q 046033 80 EAFDAAKPAFCNVLETLKPTLVIYD-LFQP------WA---AEAAYQHDIAAVAFV 125 (434)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~------~~---~~~A~~~giP~v~~~ 125 (434)
...+.....+.+.+++.+||+||+. .|.. |+ ..+.+.++||+++-.
T Consensus 63 en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM 118 (349)
T PF07355_consen 63 ENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAM 118 (349)
T ss_pred hCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEe
Confidence 3334456778889999999999999 3322 11 224557999999743
No 242
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=51.80 E-value=95 Score=31.43 Aligned_cols=38 Identities=16% Similarity=0.024 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecc
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 127 (434)
....+-+++.+.++||+|. .+...|+++|++.|.+.+.
T Consensus 135 ~~~~~~l~~~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 135 RSCVNDLRARGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHCCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 3344455567899999995 4789999999999998765
No 243
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=51.63 E-value=21 Score=35.00 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 86 KPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
..++.+++++.+||++|.... ...+|+++|||++.+.
T Consensus 358 ~~e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 358 HYELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 346678888899999999964 6778999999998664
No 244
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=51.52 E-value=14 Score=30.01 Aligned_cols=34 Identities=15% Similarity=0.312 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEE
Q 046033 9 ALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLID 49 (434)
Q Consensus 9 ~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~ 49 (434)
-+|..|+++||+|++++.....+.+.+ .|+.+..
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~~~~~~~~-------~g~~~~~ 45 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSPRLEAIKE-------QGLTITG 45 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHHHHHHHHH-------HCEEEEE
T ss_pred HHHHHHHHCCCceEEEEccccHHhhhh-------eeEEEEe
Confidence 468999999999999999885555666 5666644
No 245
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=51.40 E-value=36 Score=32.69 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=49.6
Q ss_pred cceEEeccCcchHHHHHHh-----------------CCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHH
Q 046033 323 IGGFISHCGWGSTVEGIMY-----------------GVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELA 385 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~~-----------------GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~ 385 (434)
..+++|.||..+.+.|+.+ +.|++.++... ++-..+.+..+|+|++.-+.+...+++.+.|+
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~lGlg~~~I~~~~~~~md~~~L~ 182 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARILGLGVRKIPTDEDGRMDIEALE 182 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHHTTSEEEEE-BBTTSSB-HHHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcceeeeEEEEecCCcchhhhHHHhh
Confidence 5679999998877766532 35677776555 58888889999999766554324668889999
Q ss_pred HHHHHHhc
Q 046033 386 RVFKQVVE 393 (434)
Q Consensus 386 ~~v~~ll~ 393 (434)
++|++..+
T Consensus 183 ~~l~~~~~ 190 (373)
T PF00282_consen 183 KALEKDIA 190 (373)
T ss_dssp HHHHHHHH
T ss_pred hhhccccc
Confidence 99888765
No 246
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=51.09 E-value=21 Score=31.07 Aligned_cols=84 Identities=8% Similarity=0.135 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhh-hhc---c---c-CCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHH
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQ-NLQ---E---K-FSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTL 78 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-~~~---~---~-~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
...++.-+...||.|++++++.......+ ... . - ....+.|.++ +.+ ...|.
T Consensus 45 sqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~----~~~----------------~~~~~ 104 (235)
T COG2874 45 SQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPV----NLE----------------PVNWG 104 (235)
T ss_pred HHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEe----ccc----------------ccccC
Confidence 34667777889999999999855444332 110 0 0 0122444333 111 11222
Q ss_pred HHHHHHhHHHHHHHHhhcCCCEEEEcCCCchH
Q 046033 79 IEAFDAAKPAFCNVLETLKPTLVIYDLFQPWA 110 (434)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~ 110 (434)
.+..+...+.+.+.++.++-|+||.|.++..+
T Consensus 105 ~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~ 136 (235)
T COG2874 105 RRSARKLLDLLLEFIKRWEKDVIIIDSLSAFA 136 (235)
T ss_pred hHHHHHHHHHHHhhHHhhcCCEEEEecccHHh
Confidence 33334445566677778899999999775544
No 247
>PRK04148 hypothetical protein; Provisional
Probab=50.84 E-value=34 Score=27.35 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=12.9
Q ss_pred HHHHHHHhCCCEEEEE
Q 046033 9 ALAKKLSQQNFHIYFC 24 (434)
Q Consensus 9 ~lA~~L~~~Gh~V~~~ 24 (434)
.+|..|++.||+|+.+
T Consensus 30 ~vA~~L~~~G~~ViaI 45 (134)
T PRK04148 30 KVAKKLKESGFDVIVI 45 (134)
T ss_pred HHHHHHHHCCCEEEEE
Confidence 5788888889888866
No 248
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.69 E-value=29 Score=35.45 Aligned_cols=53 Identities=26% Similarity=0.415 Sum_probs=39.2
Q ss_pred CcceEEeccCcchHHHHHHh----CCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 322 SIGGFISHCGWGSTVEGIMY----GVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 322 ~~~~~I~hgG~~s~~eal~~----GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
.++++|+-||=||++.++.. ++|++.+-... +|.-. .++++++.+++.+++++
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGFL~-------~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGFLT-------EFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCcCc-------ccCHHHHHHHHHHHHcC
Confidence 35669999999999999764 78998884321 33222 25788899999999884
No 249
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=50.30 E-value=1.7e+02 Score=25.35 Aligned_cols=148 Identities=16% Similarity=0.094 Sum_probs=69.9
Q ss_pred CceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHHHHhcc
Q 046033 241 SSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGH 320 (434)
Q Consensus 241 ~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~ 320 (434)
++++.|+.|..+ ..-+..|.+.|.++.++.... . +++.+-. ...++....--.....+..
T Consensus 10 k~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~-~----------~~l~~l~--~~~~i~~~~~~~~~~dl~~ 69 (205)
T TIGR01470 10 RAVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL-E----------SELTLLA--EQGGITWLARCFDADILEG 69 (205)
T ss_pred CeEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC-C----------HHHHHHH--HcCCEEEEeCCCCHHHhCC
Confidence 568888776543 233455556777765553211 0 1111111 1224433211112233554
Q ss_pred cCcceEEeccCcchH-----HHHHHhCCcEEec--cCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhc
Q 046033 321 GSIGGFISHCGWGST-----VEGIMYGVPIIAV--PMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 321 ~~~~~~I~hgG~~s~-----~eal~~GvP~v~~--P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
+ +++|..-|...+ .+|-..|+|+-++ |...| +..-..+.+-++-+.+..+- ..-.-...+++.|.+++.
T Consensus 70 ~--~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g~l~iaisT~G-~sP~la~~lr~~ie~~l~ 145 (205)
T TIGR01470 70 A--FLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRSPVVVAISSGG-AAPVLARLLRERIETLLP 145 (205)
T ss_pred c--EEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcCCEEEEEECCC-CCcHHHHHHHHHHHHhcc
Confidence 4 448877776533 3344578888443 32222 11112222223434343211 011233567788888875
Q ss_pred ccchHHHHHHHHHHHHHHHh
Q 046033 394 QEEGQQIKRKAKELSESIKK 413 (434)
Q Consensus 394 ~~~~~~~~~~a~~l~~~~~~ 413 (434)
.+ ...+-+.+.++++.+++
T Consensus 146 ~~-~~~~~~~~~~~R~~~k~ 164 (205)
T TIGR01470 146 PS-LGDLATLAATWRDAVKK 164 (205)
T ss_pred hh-HHHHHHHHHHHHHHHHh
Confidence 21 34566777777777765
No 250
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=49.01 E-value=36 Score=33.83 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=38.1
Q ss_pred CcceEEeccCcchHHHHHHh----CCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 322 SIGGFISHCGWGSTVEGIMY----GVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 322 ~~~~~I~hgG~~s~~eal~~----GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
.++++|+=||=||++.|+.. ++|++.+-.. .+|... .++++++.++|.+++++
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G-------------~LGFLt-------~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMG-------------SLGFMT-------PFHSEQYRDCLDAILKG 318 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-------------Ccceec-------ccCHHHHHHHHHHHHcC
Confidence 45669999999999999774 5788777210 134332 25788899999999884
No 251
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=48.87 E-value=44 Score=28.66 Aligned_cols=42 Identities=10% Similarity=-0.106 Sum_probs=29.9
Q ss_pred HhHHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEEe
Q 046033 84 AAKPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 84 ~~~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~ 125 (434)
.....+.+.+++.++|+|++- .-.+.+..+|.++|+|++..-
T Consensus 37 ~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vR 80 (191)
T TIGR01744 37 EVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFAR 80 (191)
T ss_pred HHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 334555566667789999854 223567788999999999765
No 252
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=48.58 E-value=1.1e+02 Score=25.90 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=34.7
Q ss_pred CcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcCCCCCceEEEEecC
Q 046033 183 CKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSRKEPSSVVYVSFGS 250 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs 250 (434)
...+++-+-++.-....+.+...+| .+..+|. .... .....+++.+.+...... +|+|++|+
T Consensus 49 ~~vfllG~~~~v~~~~~~~l~~~yP-~l~i~g~--~g~f--~~~~~~~i~~~I~~s~~d-il~VglG~ 110 (177)
T TIGR00696 49 LPIFLYGGKPDVLQQLKVKLIKEYP-KLKIVGA--FGPL--EPEERKAALAKIARSGAG-IVFVGLGC 110 (177)
T ss_pred CeEEEECCCHHHHHHHHHHHHHHCC-CCEEEEE--CCCC--ChHHHHHHHHHHHHcCCC-EEEEEcCC
Confidence 3557777776665555566666664 5555654 1111 111234455556554433 99999987
No 253
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=47.96 E-value=56 Score=30.10 Aligned_cols=105 Identities=17% Similarity=0.143 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchh---hhhhh-hcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPINLQ---SMSQN-LQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~~~---~v~~~-~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
.+-+.+++.|.++|++|..++.+...+ -+... ..+..-.+.+++-+|.| +...+ ............ .+
T Consensus 11 ~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~----~~~~~-~~i~~~~~~~~~-~l-- 82 (287)
T TIGR02853 11 ARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVP----GTSHD-GKVATVFSNEKV-VL-- 82 (287)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCc----cccCC-ceEecccccCCc-cc--
Confidence 356889999999999999998873222 11110 00111145666666656 22111 000000000000 00
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEcCCCchHHH-HHHHcCCcEEEEe
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYDLFQPWAAE-AAYQHDIAAVAFV 125 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~-~A~~~giP~v~~~ 125 (434)
. .++++..++..++..-....-.. +|+..||+++-+.
T Consensus 83 -----~---~~~l~~~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~~ 120 (287)
T TIGR02853 83 -----T---PELLESTKGHCTIYVGISNPYLEQLAADAGVKLIELF 120 (287)
T ss_pred -----c---HHHHHhcCCCCEEEEecCCHHHHHHHHHCCCeEEEEE
Confidence 0 13455555666665534444554 9999999999544
No 254
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.78 E-value=64 Score=30.87 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=34.0
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhh-cccCCCCeEEEE
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNL-QEKFSTSIQLID 49 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~-~~~~~~g~~f~~ 49 (434)
|-....-.+|.-++++|+.|.++|.+.++.-..... ..+...++.|+.
T Consensus 113 GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 113 GKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred CcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEe
Confidence 334556789999999999999999998887554322 223446777744
No 255
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=47.62 E-value=1.7e+02 Score=24.68 Aligned_cols=51 Identities=18% Similarity=0.108 Sum_probs=29.3
Q ss_pred HHhcccCcceEEeccCcchHHHHHH---------hCCcEEeccC--CCCh-hhHHHHHHhhce
Q 046033 316 KILGHGSIGGFISHCGWGSTVEGIM---------YGVPIIAVPM--VLDQ-LFNAKMVADIGV 366 (434)
Q Consensus 316 ~il~~~~~~~~I~hgG~~s~~eal~---------~GvP~v~~P~--~~dq-~~na~~~~~~G~ 366 (434)
.+|-..+-..++--||.||+-|.+. +.+|++++-. ++|. ..+.+.+.+.|.
T Consensus 91 ~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gf 153 (178)
T TIGR00730 91 AMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGF 153 (178)
T ss_pred HHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCC
Confidence 4443333234667788999988743 4899988742 2333 223345555553
No 256
>PLN02293 adenine phosphoribosyltransferase
Probab=47.61 E-value=58 Score=27.80 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=31.0
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEEe
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~ 125 (434)
+..+.+.+.+.+++.++|+|++- .-...+..+|..+|+|++...
T Consensus 47 ~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~r 92 (187)
T PLN02293 47 FKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPLR 92 (187)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEEE
Confidence 33445566667777789999865 233467889999999988543
No 257
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=47.39 E-value=18 Score=33.11 Aligned_cols=34 Identities=9% Similarity=0.267 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEE
Q 046033 9 ALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLID 49 (434)
Q Consensus 9 ~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~ 49 (434)
-+|..|.+.||+|++++.....+.+.+ .|+.+..
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~-------~Gl~i~~ 38 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQ-------EGLRIVS 38 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHH-------CCcEEEe
Confidence 468899999999999998755556666 6776543
No 258
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=47.29 E-value=1.5e+02 Score=26.70 Aligned_cols=103 Identities=14% Similarity=0.012 Sum_probs=55.9
Q ss_pred HHHHHHHHhCC-CEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHhH
Q 046033 8 LALAKKLSQQN-FHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAAK 86 (434)
Q Consensus 8 l~lA~~L~~~G-h~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
-+.++.|.+.+ ..|.+.++....+.+.. .......+-+..+|.++...|++.. .-....-++ - .
T Consensus 119 ~eA~~~l~~~~~~~iflttGsk~L~~f~~--~~~~~~r~~~RvLp~~~~~~g~~~~-~iia~~GPf------s------~ 183 (249)
T PF02571_consen 119 EEAAELLKELGGGRIFLTTGSKNLPPFVP--APLPGERLFARVLPTPESALGFPPK-NIIAMQGPF------S------K 183 (249)
T ss_pred HHHHHHHhhcCCCCEEEeCchhhHHHHhh--cccCCCEEEEEECCCccccCCCChh-hEEEEeCCC------C------H
Confidence 35667776677 77777777666666633 0011133444556555221222222 000000000 0 1
Q ss_pred HHHHHHHhhcCCCEEEEcCC---CchH-HHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLF---QPWA-AEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~---~~~~-~~~A~~~giP~v~~~ 125 (434)
+.-..++++++.|+||+=-. .+.. ..+|+.+|||++.+.
T Consensus 184 e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~ 226 (249)
T PF02571_consen 184 ELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIK 226 (249)
T ss_pred HHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEe
Confidence 12346889999999998622 1222 688999999999875
No 259
>PLN02470 acetolactate synthase
Probab=47.14 E-value=1.7e+02 Score=30.02 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=49.6
Q ss_pred EecCcccCCH--HHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEec--c------cCHHH
Q 046033 247 SFGSEYFLSK--EEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQG--W------APQAK 316 (434)
Q Consensus 247 s~Gs~~~~~~--~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~--~------~p~~~ 316 (434)
+|||....+. ...+.+++.|++.|.+.++-+.+.... .+.+... ...++.+.. . .-...
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~----------~l~dal~-~~~~i~~i~~rhE~~A~~~Adgy 70 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASM----------EIHQALT-RSNCIRNVLCRHEQGEVFAAEGY 70 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccH----------HHHHHHh-ccCCceEEEeccHHHHHHHHHHH
Confidence 4566554332 335667788888888877776543211 1111110 111222211 1 11111
Q ss_pred HhcccCcceEEeccCcc------hHHHHHHhCCcEEecc
Q 046033 317 ILGHGSIGGFISHCGWG------STVEGIMYGVPIIAVP 349 (434)
Q Consensus 317 il~~~~~~~~I~hgG~~------s~~eal~~GvP~v~~P 349 (434)
-.......++++|.|.| .+.+|...++|+|++.
T Consensus 71 ar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 71 AKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 11122455588888865 7889999999999995
No 260
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=46.66 E-value=34 Score=33.46 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=27.2
Q ss_pred HHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEec
Q 046033 91 NVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~ 126 (434)
+.++..+||++|.. ..+..+|+++|||++.+..
T Consensus 344 ~~~~~~~pDl~Ig~---s~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 344 AAVEEYRPDLAIGT---TPLVQYAKEKGIPALYYTN 376 (416)
T ss_pred HHHhhcCCCEEEeC---ChhhHHHHHhCCCEEEecC
Confidence 45667899999998 3478899999999998653
No 261
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=46.01 E-value=66 Score=26.79 Aligned_cols=48 Identities=15% Similarity=0.279 Sum_probs=32.6
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEc-CCCc------------h--HHHHHHHcCCcEEEEecchH
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYD-LFQP------------W--AAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d-~~~~------------~--~~~~A~~~giP~v~~~~~~~ 129 (434)
+..+.+.+.+++++.+||.|+.+ .|.. . ...++...|||+.-+.+...
T Consensus 46 l~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~~V 108 (164)
T PRK00039 46 LKQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPLQV 108 (164)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHh
Confidence 44445788899999999999877 2211 1 13466677999988765543
No 262
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=45.79 E-value=31 Score=34.22 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.8
Q ss_pred HHHHHHHHhCCCEEEEEeCCC
Q 046033 8 LALAKKLSQQNFHIYFCSTPI 28 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~ 28 (434)
.+||+++..+|++|++++++.
T Consensus 286 ~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 286 FAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred HHHHHHHHHCCCcEEEEeCCc
Confidence 578999999999999999865
No 263
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=45.73 E-value=33 Score=30.10 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=27.4
Q ss_pred HHHhhcCCCEEEEcCCC--chHHHHHHHcCCcEEEEecch
Q 046033 91 NVLETLKPTLVIYDLFQ--PWAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~--~~~~~~A~~~giP~v~~~~~~ 128 (434)
+.+...+||+||..... ..........++|++.+....
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 55666899999988554 455666777899999988765
No 264
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=44.71 E-value=1.7e+02 Score=23.69 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=21.3
Q ss_pred cceEEeccCcc------hHHHHHHhCCcEEecc
Q 046033 323 IGGFISHCGWG------STVEGIMYGVPIIAVP 349 (434)
Q Consensus 323 ~~~~I~hgG~~------s~~eal~~GvP~v~~P 349 (434)
..++++|+|.| .+.+|...++|+|++.
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~ 92 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVIT 92 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 34488886654 7788999999999995
No 265
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=44.67 E-value=1.9e+02 Score=24.20 Aligned_cols=63 Identities=14% Similarity=0.203 Sum_probs=35.9
Q ss_pred CcEEEEcCCchhcHHHHHHHhhhcCCceeeeCCCCCCCCCCCCCCchhhhhhhcCCCCCceEEEEecC
Q 046033 183 CKLVLVKTSREIESKDLHYLSYITKKETIPVGPLVQEPIYTDNNNDTKIMDWLSRKEPSSVVYVSFGS 250 (434)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs 250 (434)
...+++-+.++.-....+.+...+| ++..+|..... -.....+++.+.+....+. +|+|++|+
T Consensus 47 ~~v~llG~~~~~~~~~~~~l~~~yp-~l~i~g~~~g~---~~~~~~~~i~~~I~~~~pd-iv~vglG~ 109 (171)
T cd06533 47 LRVFLLGAKPEVLEKAAERLRARYP-GLKIVGYHHGY---FGPEEEEEIIERINASGAD-ILFVGLGA 109 (171)
T ss_pred CeEEEECCCHHHHHHHHHHHHHHCC-CcEEEEecCCC---CChhhHHHHHHHHHHcCCC-EEEEECCC
Confidence 4556777766555555555666664 66667632211 0111233456666655443 99999987
No 266
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.60 E-value=45 Score=30.42 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=35.6
Q ss_pred cceEEeccCcchHHHHHH----hCCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhc
Q 046033 323 IGGFISHCGWGSTVEGIM----YGVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~----~GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
++++|+=||=||++.|+. .++|++.+-... +|.-.. .+++++.+.+.++++
T Consensus 43 ~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G~-------------lGFL~~-------~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 43 AQLAIVIGGDGNMLGRARVLAKYDIPLIGINRGN-------------LGFLTD-------IDPKNAYEQLEACLE 97 (272)
T ss_pred CCEEEEECCcHHHHHHHHHhccCCCcEEEEeCCC-------------Cccccc-------CCHHHHHHHHHHHHh
Confidence 455999999999998755 378998884311 333332 467777778877777
No 267
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=44.07 E-value=1.9e+02 Score=24.01 Aligned_cols=109 Identities=16% Similarity=0.043 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHhHH
Q 046033 8 LALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAAKP 87 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (434)
-.+|.+|.++|+.|.=+........-.. ...+....++.. ..++-. +..... ..-.+.--..+.....
T Consensus 17 ~~~a~~L~~~G~rv~G~vQ~~~~~~~~~------~~~m~l~dl~~G---~~~~Is--Q~LG~g-s~gCrLD~~~La~A~~ 84 (159)
T PF10649_consen 17 AAFAARLRARGVRVAGLVQRNTADGDGG------RCDMDLRDLPSG---RRIRIS--QDLGPG-SRGCRLDPGALAEASA 84 (159)
T ss_pred HHHHHHHHhCCCeEEEEeccccCCCCCC------ccceEEEECCCC---CEEEEe--eccCCC-CcccccCHHHHHHHHH
Confidence 4679999999999987765542221111 044555444211 111000 000000 0111111112222233
Q ss_pred HHHHHHhhcCCCEEEEcCCC--------c-hHHHHHHHcCCcEEEEecchH
Q 046033 88 AFCNVLETLKPTLVIYDLFQ--------P-WAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 88 ~~~~~l~~~~pDlVi~d~~~--------~-~~~~~A~~~giP~v~~~~~~~ 129 (434)
.+...+. ..||++|..-|. + .....|-..|||+++..+...
T Consensus 85 ~l~~al~-~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~ 134 (159)
T PF10649_consen 85 ALRRALA-EGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRN 134 (159)
T ss_pred HHHHHHh-cCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHH
Confidence 4445555 379999998441 1 123445567999998766544
No 268
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=44.07 E-value=31 Score=33.74 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=26.7
Q ss_pred HHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 91 NVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
+.+++.+||++|+.. -...+|+++|||++.+.
T Consensus 349 ~~l~~~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 349 EAVLEFEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred HHHhhCCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 566788999999994 36778999999999865
No 269
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=43.46 E-value=1.9e+02 Score=23.94 Aligned_cols=27 Identities=19% Similarity=0.367 Sum_probs=22.1
Q ss_pred cceEEeccCcc------hHHHHHHhCCcEEecc
Q 046033 323 IGGFISHCGWG------STVEGIMYGVPIIAVP 349 (434)
Q Consensus 323 ~~~~I~hgG~~------s~~eal~~GvP~v~~P 349 (434)
..++++|.|.| .+.+|...++|+|++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44488888865 6789999999999995
No 270
>PRK06849 hypothetical protein; Provisional
Probab=43.35 E-value=79 Score=30.47 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCC
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPI 28 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~ 28 (434)
-.+.+|+.|.++||+|.++....
T Consensus 16 ~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 16 AALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCc
Confidence 47899999999999999987764
No 271
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=43.30 E-value=1.1e+02 Score=29.71 Aligned_cols=51 Identities=16% Similarity=0.087 Sum_probs=38.5
Q ss_pred HhHHHHHHHHhhcCCCEEEEcCCCc----hHHHHHHH---cCCcEEEEecchHHHHHh
Q 046033 84 AAKPAFCNVLETLKPTLVIYDLFQP----WAAEAAYQ---HDIAAVAFVTIAAASFSF 134 (434)
Q Consensus 84 ~~~~~~~~~l~~~~pDlVi~d~~~~----~~~~~A~~---~giP~v~~~~~~~~~~~~ 134 (434)
...+++.+.|++.++|.||-...|. |++.+++. .|||+|.+.+..+...+.
T Consensus 323 ~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pis~tv 380 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPIALTV 380 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccHhhhc
Confidence 4567788888888999999775543 45666654 599999999887776664
No 272
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=42.97 E-value=80 Score=28.53 Aligned_cols=26 Identities=8% Similarity=0.023 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchh
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINLQ 31 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~~ 31 (434)
-.+.+|...+++|..|.|++.+...+
T Consensus 52 l~~qf~~~~a~~Ge~vlyis~Ee~~~ 77 (259)
T TIGR03878 52 MVEQFAVTQASRGNPVLFVTVESPAN 77 (259)
T ss_pred HHHHHHHHHHhCCCcEEEEEecCCch
Confidence 35566777777899999999885443
No 273
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=42.95 E-value=94 Score=23.85 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEe-------cccCHHHHhc---ccCcceE
Q 046033 257 EEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQ-------GWAPQAKILG---HGSIGGF 326 (434)
Q Consensus 257 ~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~-------~~~p~~~il~---~~~~~~~ 326 (434)
+...+++.++++.|.+.+.+-....... .... ..+.++.. +|+....++. ...+ .
T Consensus 12 eia~r~~ra~r~~Gi~tv~v~s~~d~~s--------~~~~-----~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~ 76 (110)
T PF00289_consen 12 EIAVRIIRALRELGIETVAVNSNPDTVS--------THVD-----MADEAYFEPPGPSPESYLNIEAIIDIARKEGA--D 76 (110)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEGGGTTG--------HHHH-----HSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--S
T ss_pred HHHHHHHHHHHHhCCcceeccCchhccc--------cccc-----ccccceecCcchhhhhhccHHHHhhHhhhhcC--c
Confidence 5567789999999999888866442211 0111 11222222 4676665543 2344 7
Q ss_pred EeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHhhceeeee
Q 046033 327 ISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVADIGVGLEV 370 (434)
Q Consensus 327 I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~~G~g~~~ 370 (434)
..|+|+|-..|. ..-++++++.|+-..-
T Consensus 77 ~i~pGyg~lse~----------------~~fa~~~~~~gi~fiG 104 (110)
T PF00289_consen 77 AIHPGYGFLSEN----------------AEFAEACEDAGIIFIG 104 (110)
T ss_dssp EEESTSSTTTTH----------------HHHHHHHHHTT-EESS
T ss_pred ccccccchhHHH----------------HHHHHHHHHCCCEEEC
Confidence 789999977666 5667778877765443
No 274
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=42.92 E-value=1.5e+02 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 89 FCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 89 ~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
+.+.++ +||++|.+. ....+|+++|||++.+.
T Consensus 365 le~~~~--~~dliig~s---~~~~~a~~~gip~~~~g 396 (455)
T PRK14476 365 LEELAE--GADLLITNS---HGRQAAERLGIPLLRVG 396 (455)
T ss_pred HHHhcc--CCCEEEECc---hhHHHHHHcCCCEEEec
Confidence 444454 899999995 46789999999998654
No 275
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.54 E-value=1.2e+02 Score=25.08 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=53.6
Q ss_pred cchHHHHHHhCCcEEeccCCC-ChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 046033 332 WGSTVEGIMYGVPIIAVPMVL-DQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSES 410 (434)
Q Consensus 332 ~~s~~eal~~GvP~v~~P~~~-dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~ 410 (434)
+.|..|-..+|.=.+-=-.+. =+..|+...++.|.=..+- -+..+.++|.++..+=|.|++..++++.+.++.+.
T Consensus 87 a~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~rFgfPfI~a----Vkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rI 162 (176)
T COG3195 87 AESTSEQASAGLDRLSPEEFARFTELNAAYVERFGFPFIIA----VKGNTKDTILAAFERRLDNDREQEFATALAEIERI 162 (176)
T ss_pred hhhHHHHHhcCcccCCHHHHHHHHHHHHHHHHhcCCceEEe----ecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 346666666665443211111 1578999999999887776 45678999999999999977777888887777665
Q ss_pred HH
Q 046033 411 IK 412 (434)
Q Consensus 411 ~~ 412 (434)
.+
T Consensus 163 A~ 164 (176)
T COG3195 163 AL 164 (176)
T ss_pred HH
Confidence 54
No 276
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=42.53 E-value=60 Score=32.48 Aligned_cols=98 Identities=10% Similarity=0.095 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhc----c--c-CCCC-eEEEEecCCCCCCCCCCCCCCCCCCCccccHHH
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQ----E--K-FSTS-IQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPT 77 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~----~--~-~~~g-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (434)
=.+.++.+.+++|..|.|++.++..+.+...-. + + ...| +.+..+. | .. .
T Consensus 279 l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~-p-------~~-----------~--- 336 (484)
T TIGR02655 279 LVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAY-P-------ES-----------A--- 336 (484)
T ss_pred HHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcc-c-------cc-----------C---
Confidence 356678888889999999999988887765310 0 0 0011 3332220 0 00 0
Q ss_pred HHHHHHHhHHHHHHHHhhcCCCEEEEcCCCch---------------HHHHHHHcCCcEEEEecch
Q 046033 78 LIEAFDAAKPAFCNVLETLKPTLVIYDLFQPW---------------AAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~---------------~~~~A~~~giP~v~~~~~~ 128 (434)
........+.+.+++.+|++||.|..... -...++..|+..+.+....
T Consensus 337 ---~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~~~t~~~~ 399 (484)
T TIGR02655 337 ---GLEDHLQIIKSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGFFTNTSD 399 (484)
T ss_pred ---ChHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeEEEeeccc
Confidence 01223455567778889999999965432 1224566788887775443
No 277
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=42.50 E-value=55 Score=29.31 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=22.8
Q ss_pred cceEEeccCcchHHHHHHh----CCcEEeccC
Q 046033 323 IGGFISHCGWGSTVEGIMY----GVPIIAVPM 350 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~~----GvP~v~~P~ 350 (434)
++++|+-||=||++.|+.. ++|++.+-.
T Consensus 26 ~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADVIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 4669999999999988664 689988853
No 278
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=42.27 E-value=56 Score=29.69 Aligned_cols=40 Identities=15% Similarity=0.025 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEEe
Q 046033 86 KPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~ 125 (434)
...+.+.+++.++|+|++- --.+.|..+|.++|+|++..-
T Consensus 117 g~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vivR 158 (268)
T TIGR01743 117 GKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIVR 158 (268)
T ss_pred HHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEEE
Confidence 4444555566689999865 334677889999999999765
No 279
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=41.53 E-value=65 Score=31.15 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=30.5
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEc-CCCc------hH---HHHHHHcCCcEEEEe
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYD-LFQP------WA---AEAAYQHDIAAVAFV 125 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d-~~~~------~~---~~~A~~~giP~v~~~ 125 (434)
.+.....+.+.+++.+||++|+. .|.. |+ ..+.+++|||.+.-.
T Consensus 61 ~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 61 LEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 44445778889999999999998 3322 11 223456899999754
No 280
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=41.49 E-value=64 Score=26.82 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCEEEEcCCC---chHHHHHHHcCCcEEEEecch
Q 046033 86 KPAFCNVLETLKPTLVIYDLFQ---PWAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d~~~---~~~~~~A~~~giP~v~~~~~~ 128 (434)
.+.+.+++++.+||+|+.-... ..+..+|.++|.|++.-....
T Consensus 72 a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~l 117 (168)
T cd01715 72 APALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTAL 117 (168)
T ss_pred HHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEEE
Confidence 3445567777889999977332 467899999999999765543
No 281
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=41.44 E-value=65 Score=31.16 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=30.6
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEc-CCCc------hH---HHHHHHcCCcEEEEe
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYD-LFQP------WA---AEAAYQHDIAAVAFV 125 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d-~~~~------~~---~~~A~~~giP~v~~~ 125 (434)
.+.....+.+.+++.+||++|+. .|.. |+ ..+.+++|||.+.-.
T Consensus 61 ~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 61 LEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 44456778889999999999998 3322 11 123456899999754
No 282
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=41.36 E-value=56 Score=27.87 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCC--EEEEc-CCCchHHHHHHHcCCcEEEEecchHH
Q 046033 87 PAFCNVLETLKPT--LVIYD-LFQPWAAEAAYQHDIAAVAFVTIAAA 130 (434)
Q Consensus 87 ~~~~~~l~~~~pD--lVi~d-~~~~~~~~~A~~~giP~v~~~~~~~~ 130 (434)
..+.+++++..++ ++|.. .--+.|..+|+++|+|.|.+.|....
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 3455677776655 55555 44457778899999999998877543
No 283
>PRK09213 pur operon repressor; Provisional
Probab=41.29 E-value=59 Score=29.58 Aligned_cols=41 Identities=15% Similarity=-0.003 Sum_probs=29.4
Q ss_pred HHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEEec
Q 046033 86 KPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~~ 126 (434)
...+.+.+...++|+|++= --.+.|..+|..+|+|++..-.
T Consensus 119 ~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK 161 (271)
T PRK09213 119 GRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIVRR 161 (271)
T ss_pred HHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 3444455566689999865 3336778899999999997653
No 284
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=41.11 E-value=51 Score=29.19 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=17.0
Q ss_pred HHHHHHHHhCCCEEEEEeCC
Q 046033 8 LALAKKLSQQNFHIYFCSTP 27 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~ 27 (434)
.+||++|.++||+|++++..
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 46899999999999998754
No 285
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=40.92 E-value=1.3e+02 Score=29.11 Aligned_cols=51 Identities=16% Similarity=0.078 Sum_probs=38.7
Q ss_pred hHHHHHHHHhhcCCCEEEEcCCCc----hHHHHHHH---cCCcEEEEecchHHHHHhh
Q 046033 85 AKPAFCNVLETLKPTLVIYDLFQP----WAAEAAYQ---HDIAAVAFVTIAAASFSFF 135 (434)
Q Consensus 85 ~~~~~~~~l~~~~pDlVi~d~~~~----~~~~~A~~---~giP~v~~~~~~~~~~~~~ 135 (434)
+.+++.+.|++...|.||-...|. |++.+++. .|||+|.+.+..+...+..
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~~~vG 381 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIALTVG 381 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHHHhcC
Confidence 567778888888999999775543 45666654 5999999999888777643
No 286
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=40.79 E-value=31 Score=30.38 Aligned_cols=26 Identities=12% Similarity=0.232 Sum_probs=20.0
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCC
Q 046033 3 HITPYLALAKKLSQQNFHIYFCSTPI 28 (434)
Q Consensus 3 H~~p~l~lA~~L~~~Gh~V~~~~~~~ 28 (434)
|+..|-..|.+|+++||+|+++..+.
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56788899999999999999998873
No 287
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=40.32 E-value=55 Score=27.66 Aligned_cols=37 Identities=24% Similarity=0.194 Sum_probs=24.6
Q ss_pred HHHhhcCCCEEEEcCCCch-HHHHHHHcCCcEEEEecc
Q 046033 91 NVLETLKPTLVIYDLFQPW-AAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~~~-~~~~A~~~giP~v~~~~~ 127 (434)
+.+.+.+||+||....... ....-++.|+|++.+...
T Consensus 54 E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~ 91 (195)
T cd01143 54 EKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAA 91 (195)
T ss_pred HHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCC
Confidence 4556679999998643222 344556789999877543
No 288
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=40.25 E-value=1.3e+02 Score=29.04 Aligned_cols=86 Identities=12% Similarity=0.154 Sum_probs=53.3
Q ss_pred HHHHHHHHhCC-CEEEEEeCC-CchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 046033 8 LALAKKLSQQN-FHIYFCSTP-INLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAA 85 (434)
Q Consensus 8 l~lA~~L~~~G-h~V~~~~~~-~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
-.+|+.|+++| ++|++++.. .....+.... ...+++..+ +...
T Consensus 14 ~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----~~~v~~~~v------D~~d------------------------- 58 (389)
T COG1748 14 SVVAHKLAQNGDGEVTIADRSKEKCARIAELI----GGKVEALQV------DAAD------------------------- 58 (389)
T ss_pred HHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----cccceeEEe------cccC-------------------------
Confidence 35789999999 999999876 4444554421 023555444 1110
Q ss_pred HHHHHHHHhhcCCCEEEEc---CCCchHHHHHHHcCCcEEEEecchHH
Q 046033 86 KPAFCNVLETLKPTLVIYD---LFQPWAAEAAYQHDIAAVAFVTIAAA 130 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d---~~~~~~~~~A~~~giP~v~~~~~~~~ 130 (434)
.+.+.++|++. |+||.= ++....+.+|-+.|++++-++.....
T Consensus 59 ~~al~~li~~~--d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~ 104 (389)
T COG1748 59 VDALVALIKDF--DLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEP 104 (389)
T ss_pred hHHHHHHHhcC--CEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCch
Confidence 12344666655 888865 33334456778889999887766554
No 289
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=40.20 E-value=37 Score=23.31 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=17.5
Q ss_pred HHHHHHHHhCCCEEEEEeCCC
Q 046033 8 LALAKKLSQQNFHIYFCSTPI 28 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~ 28 (434)
+..|..|+++|++|+++-...
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 567999999999999996553
No 290
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.18 E-value=47 Score=29.76 Aligned_cols=37 Identities=22% Similarity=0.114 Sum_probs=24.1
Q ss_pred HHHhhcCCCEEEEcCCCch--HHH-HHHHcCCcEEEEecc
Q 046033 91 NVLETLKPTLVIYDLFQPW--AAE-AAYQHDIAAVAFVTI 127 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~~~--~~~-~A~~~giP~v~~~~~ 127 (434)
+.+...+||+||....... ... +.+.+|+|++.+...
T Consensus 68 E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 68 EKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred HHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 5666689999998743222 223 333489999988654
No 291
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=40.04 E-value=99 Score=27.14 Aligned_cols=110 Identities=16% Similarity=0.109 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHHhCCCEEEEEeCCCchhh-hhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 3 HITPYLALAKKLSQQNFHIYFCSTPINLQS-MSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 3 H~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~-v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
|+..++.+...++.+|=.+.|+++-..... ++.. .+.. .|+....-..+ |+-.. .....+. +..
T Consensus 93 ~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~a-A~r~-~gy~~~~~w~~----G~lTN-~~~l~g~---~~~----- 157 (251)
T KOG0832|consen 93 YLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERA-ARRA-GGYSHNRKWLG----GLLTN-ARELFGA---LVR----- 157 (251)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHH-HHHh-cCceeeeeecc----ceeec-chhhccc---ccc-----
Confidence 567788888999999999999987755554 4331 1111 33433332222 32222 1111110 000
Q ss_pred HHHhHHHHHHHHhhcCCCEEEE-c-CCCchHHHHHHHcCCcEEEEecc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIY-D-LFQPWAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~-d-~~~~~~~~~A~~~giP~v~~~~~ 127 (434)
-....+....++....+|+||. | .-...++.=|.+++||.|.+.-.
T Consensus 158 ~~~~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDt 205 (251)
T KOG0832|consen 158 KFLSLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDT 205 (251)
T ss_pred cccCCCcceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEEecC
Confidence 0001222334555667898864 5 33457888899999999987533
No 292
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=39.86 E-value=2.8e+02 Score=26.06 Aligned_cols=35 Identities=6% Similarity=-0.036 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEE
Q 046033 86 KPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAV 122 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v 122 (434)
...+.+++.+.++|+||.|. +.....-+.+++|-+
T Consensus 114 l~~i~e~~~~~~yD~IV~Dt--aPTG~TLRlL~lP~~ 148 (322)
T COG0003 114 LLKILEYYVSGEYDVIVVDT--APTGHTLRLLSLPEV 148 (322)
T ss_pred HHHHHHHHhccCCCEEEEcC--CChHHHHHHhccHHH
Confidence 34455666667899999994 456777888888876
No 293
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=39.79 E-value=63 Score=30.13 Aligned_cols=34 Identities=18% Similarity=0.338 Sum_probs=27.0
Q ss_pred HHhcccCcceEEeccCcchHHHHHHhCCcEEecc
Q 046033 316 KILGHGSIGGFISHCGWGSTVEGIMYGVPIIAVP 349 (434)
Q Consensus 316 ~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P 349 (434)
.++..-..+++|+.++..+..-|-..|+|.+.+-
T Consensus 87 ~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 87 NIIREYNPDLIISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred HHHHhcCCCEEEECCchHHHHHHHhcCCCEEEEe
Confidence 3444444566999999999999999999999664
No 294
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=39.50 E-value=3.5e+02 Score=25.95 Aligned_cols=41 Identities=22% Similarity=0.228 Sum_probs=31.6
Q ss_pred CcEEEecccCHH---HHhcccCcceEEeccCcchHHHHHHhCCcEEe
Q 046033 304 KGMVVQGWAPQA---KILGHGSIGGFISHCGWGSTVEGIMYGVPIIA 347 (434)
Q Consensus 304 ~~v~~~~~~p~~---~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~ 347 (434)
-.+.+.+|+||. .+|-.+++ -+-. |=-|+.-|..+|+|.|=
T Consensus 244 l~l~~lPF~~Q~~yD~LLw~cD~--NfVR-GEDSfVRAqwAgkPFvW 287 (374)
T PF10093_consen 244 LTLHVLPFVPQDDYDRLLWACDF--NFVR-GEDSFVRAQWAGKPFVW 287 (374)
T ss_pred eEEEECCCCCHHHHHHHHHhCcc--ceEe-cchHHHHHHHhCCCceE
Confidence 445677999996 77776666 4444 67899999999999974
No 295
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=39.30 E-value=61 Score=28.88 Aligned_cols=40 Identities=18% Similarity=0.066 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEEe
Q 046033 86 KPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~ 125 (434)
...+.+.+...++|+|++- --.+.|..+|..+|+|++..-
T Consensus 100 ~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~R 141 (238)
T PRK08558 100 APVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAK 141 (238)
T ss_pred HHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEE
Confidence 3344455556689999865 333577889999999998653
No 296
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=39.25 E-value=38 Score=25.72 Aligned_cols=31 Identities=13% Similarity=0.316 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
.|.+.|+++|.++|.+|.+.=+-........
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~ 47 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKE 47 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHh
Confidence 6899999999999999887765544444433
No 297
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=39.07 E-value=1.8e+02 Score=27.42 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAA 85 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
-+..|++.|.++|++|.+++++...+...... .++... ..+... .. +
T Consensus 196 ~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~-----~~~~~~--------~~l~~k----------~s---L------- 242 (334)
T COG0859 196 HYAELAELLIAKGYQVVLFGGPDEEERAEEIA-----KGLPNA--------VILAGK----------TS---L------- 242 (334)
T ss_pred HHHHHHHHHHHCCCEEEEecChHHHHHHHHHH-----HhcCCc--------cccCCC----------CC---H-------
Confidence 46789999999999999998885555554411 011000 000000 01 1
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecch
Q 046033 86 KPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~ 128 (434)
.++..+++ ..|+||+.- .+...+|..+|.|+|.+...+
T Consensus 243 -~e~~~li~--~a~l~I~~D--Sg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 243 -EELAALIA--GADLVIGND--SGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred -HHHHHHHh--cCCEEEccC--ChHHHHHHHcCCCEEEEECCC
Confidence 12223443 679988763 478999999999999987554
No 298
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=38.94 E-value=31 Score=34.22 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 88 AFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 88 ~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
++.+.++..+||++|+... ...+|+++|||++.+.
T Consensus 386 e~~~~i~~~~pDllig~~~---~~~~a~k~gip~~~~~ 420 (457)
T TIGR01284 386 ELEEIIEKYKPDIILTGIR---EGELAKKLGVPYINIH 420 (457)
T ss_pred HHHHHHHhcCCCEEEecCC---cchhhhhcCCCEEEcc
Confidence 5567788889999999854 5779999999999763
No 299
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=38.91 E-value=62 Score=28.50 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=26.6
Q ss_pred HHHHHhhcCCCEEEEcCC--CchHHHHHHH----cCCcEEEEecchH
Q 046033 89 FCNVLETLKPTLVIYDLF--QPWAAEAAYQ----HDIAAVAFVTIAA 129 (434)
Q Consensus 89 ~~~~l~~~~pDlVi~d~~--~~~~~~~A~~----~giP~v~~~~~~~ 129 (434)
....+++|+||.+|.-.- ...+...|++ .|+|+|+++-.+.
T Consensus 52 ~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 52 VKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred HHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCc
Confidence 345678999998876522 2233445554 4999999886553
No 300
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=38.82 E-value=37 Score=33.53 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=28.5
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
.++.+.+++.+||++|.... ...+|+++|||++...
T Consensus 377 ~e~~~~i~~~~pdllig~s~---~~~~A~~lgip~~~~~ 412 (443)
T TIGR01862 377 LEFEEILEKLKPDIIFSGIK---EKFVAQKLGVPYRQMH 412 (443)
T ss_pred HHHHHHHHhcCCCEEEEcCc---chhhhhhcCCCeEecC
Confidence 34556678889999999853 5789999999999753
No 301
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=38.80 E-value=2.5e+02 Score=24.62 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhC-CCEEEEEeCCCchhhhhh
Q 046033 6 PYLALAKKLSQQ-NFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 6 p~l~lA~~L~~~-Gh~V~~~~~~~~~~~v~~ 35 (434)
-++.++..+... |+.|.|++.+...+.+..
T Consensus 29 ~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 29 FALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred HHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 356677777666 999999999987776554
No 302
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=38.57 E-value=1.2e+02 Score=29.66 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=33.7
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhc-ccCCCCeEEEE
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQ-EKFSTSIQLID 49 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~-~~~~~g~~f~~ 49 (434)
|-..-+-.||+-|+.+|+.|.+++.+.++........ -+...|+.|+.
T Consensus 112 GKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 112 GKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred ChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 4566788999999999999999999988876543210 01125666643
No 303
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=38.55 E-value=34 Score=33.40 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=26.2
Q ss_pred HHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEE
Q 046033 89 FCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAF 124 (434)
Q Consensus 89 ~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~ 124 (434)
+.+.+++.+||+||.... ...+|+++|||++.+
T Consensus 350 ~~~~~~~~~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 350 FFEILEMLKPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred HHHHHHhcCCCEEEecCc---cchhhhhcCCCEEec
Confidence 345667789999999854 447899999999976
No 304
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=38.42 E-value=1.8e+02 Score=27.40 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhc-ccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQ-EKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIE 80 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~-~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (434)
|-....-.||+.|.+.|+.|.++..+.|+.-...... -.-..|++++.. . .|-++. ...+.
T Consensus 151 GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~--~---~G~DpA-------------aVafD 212 (340)
T COG0552 151 GKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISG--K---EGADPA-------------AVAFD 212 (340)
T ss_pred chHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEcc--C---CCCCcH-------------HHHHH
Confidence 3445667899999999999999999988876433110 000156777543 1 222222 12222
Q ss_pred HHHHhHHHHHHHHhhcCCCEEEEc
Q 046033 81 AFDAAKPAFCNVLETLKPTLVIYD 104 (434)
Q Consensus 81 ~~~~~~~~~~~~l~~~~pDlVi~d 104 (434)
.. +.-+..+.|+||+|
T Consensus 213 Ai--------~~Akar~~DvvliD 228 (340)
T COG0552 213 AI--------QAAKARGIDVVLID 228 (340)
T ss_pred HH--------HHHHHcCCCEEEEe
Confidence 22 45556789999999
No 305
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=38.24 E-value=2.3e+02 Score=23.44 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhCCCEEEE---EeCC--CchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHH
Q 046033 4 ITPYLALAKKLSQQNFHIYF---CSTP--INLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTL 78 (434)
Q Consensus 4 ~~p~l~lA~~L~~~Gh~V~~---~~~~--~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (434)
...++.+|-+.+.+|+.|.| +-+. .....+.+ .. +++++...... ..-. .. + ...-
T Consensus 16 t~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~----~l-~~v~~~~~g~~-----~~~~----~~----~-~~~~ 76 (159)
T cd00561 16 TTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALE----RL-PNIEIHRMGRG-----FFWT----TE----N-DEED 76 (159)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHH----hC-CCcEEEECCCC-----CccC----CC----C-hHHH
Confidence 44566677777788999998 3332 11111222 12 47787665211 1100 00 1 1122
Q ss_pred HHHHHHhHHHHHHHHhhcCCCEEEEcCC
Q 046033 79 IEAFDAAKPAFCNVLETLKPTLVIYDLF 106 (434)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~pDlVi~d~~ 106 (434)
............+.+++..+|+||-|-+
T Consensus 77 ~~~a~~~~~~a~~~~~~~~~dLlVLDEi 104 (159)
T cd00561 77 IAAAAEGWAFAKEAIASGEYDLVILDEI 104 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEech
Confidence 2333344455667777778999999944
No 306
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=38.23 E-value=79 Score=26.98 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEEe
Q 046033 86 KPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~ 125 (434)
...+.+.++..++|.|+.- --.+.+..+|..+|+|++..-
T Consensus 62 ~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vR 103 (187)
T PRK13810 62 ARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVR 103 (187)
T ss_pred HHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEe
Confidence 3445556666789999865 223456778889999998643
No 307
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=38.12 E-value=1.2e+02 Score=27.85 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchh
Q 046033 8 LALAKKLSQQNFHIYFCSTPINLQ 31 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~~~~ 31 (434)
.++|..|+++|++|.+++.+....
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCC
Confidence 578889999999999999875544
No 308
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=38.05 E-value=40 Score=28.57 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
...+.++|+++|++|.++.++...+++..
T Consensus 15 a~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 15 GIRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred HHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 56789999999999999999988887754
No 309
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=38.02 E-value=36 Score=29.26 Aligned_cols=29 Identities=7% Similarity=-0.024 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
...++++|.++||+|+++.++...+++..
T Consensus 22 a~~lir~L~k~G~~V~vv~T~aA~~~~~~ 50 (196)
T PRK08305 22 VMPEIEKLVDEGAEVTPIVSYTVQTTDTR 50 (196)
T ss_pred HHHHHHHHHhCcCEEEEEECHhHHHHhhh
Confidence 47889999999999999999877665543
No 310
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=37.86 E-value=70 Score=28.91 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=30.7
Q ss_pred HHHHHHhhcCCCEEEEc------CCCchHHHHHHHcCCcEEEEecc
Q 046033 88 AFCNVLETLKPTLVIYD------LFQPWAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 88 ~~~~~l~~~~pDlVi~d------~~~~~~~~~A~~~giP~v~~~~~ 127 (434)
.+...++..++|+|++. ...-.+..+|+.+|+|++.+-.-
T Consensus 102 ~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~ 147 (260)
T COG2086 102 ALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSK 147 (260)
T ss_pred HHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEE
Confidence 45578888999999975 22235789999999999986544
No 311
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=37.81 E-value=40 Score=25.42 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCCCEEEEc---CCCchHHHHHHHcCCcEEE
Q 046033 87 PAFCNVLETLKPTLVIYD---LFQPWAAEAAYQHDIAAVA 123 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d---~~~~~~~~~A~~~giP~v~ 123 (434)
+.+.++.++.+.|+||.. ++..+.++..+..|||++-
T Consensus 52 ~~l~~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 52 EELADFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp HHHHHHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred HHHHHHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 455677888999999988 4445667888888999873
No 312
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=37.36 E-value=1.2e+02 Score=30.28 Aligned_cols=44 Identities=9% Similarity=0.260 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCC
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDP 62 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~ 62 (434)
.+.+|+.|.+.|+++. +++...+.+.. .|+.+..+. ...|+|+-
T Consensus 13 iv~lAk~L~~lGfeIi--ATgGTak~L~e-------~GI~v~~Vs---k~TgfPEi 56 (511)
T TIGR00355 13 IVEFAQGLVERGVELL--STGGTAKLLAE-------AGVPVTEVS---DYTGFPEM 56 (511)
T ss_pred HHHHHHHHHHCCCEEE--EechHHHHHHH-------CCCeEEEee---cccCCchh
Confidence 5789999999999984 77788888888 788887762 33455543
No 313
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=37.32 E-value=1.2e+02 Score=20.86 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=28.5
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHhhh
Q 046033 384 LARVFKQVVEQEEGQQIKRKAKELSESIKKKG--DDEEINVVEKLLQLV 430 (434)
Q Consensus 384 l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~--~~~~~~~ve~l~~~~ 430 (434)
+.-.|-++++ |+++.+.|++ ++.++.| ..+++++.+-|.+|.
T Consensus 36 FQlLitRLmn---neeIsEeaQ~--EMA~eAgi~~~rID~IA~fLNqWG 79 (81)
T PF10820_consen 36 FQLLITRLMN---NEEISEEAQQ--EMASEAGIDEQRIDDIANFLNQWG 79 (81)
T ss_pred HHHHHHHHhc---cHhhhHHHHH--HHHHHcCCcHHHHHHHHHHHHHhc
Confidence 3345667777 6788888763 4444556 777888888887765
No 314
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=37.30 E-value=2.3e+02 Score=26.33 Aligned_cols=28 Identities=25% Similarity=0.099 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchhh
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPINLQS 32 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~~~~ 32 (434)
.-..++|..++++|++|.+++++.....
T Consensus 16 T~aaA~A~~~A~~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 16 TVAAALALALARRGKRTLLVSTDPAHSL 43 (305)
T ss_dssp HHHHHHHHHHHHTTS-EEEEESSTTTHH
T ss_pred HHHHHHHHHHhhCCCCeeEeecCCCccH
Confidence 4456788899999999999999866554
No 315
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=36.90 E-value=40 Score=32.49 Aligned_cols=30 Identities=23% Similarity=0.384 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
.=++.++..|+++| .|.|+++++..+.++-
T Consensus 108 TLLLQva~~lA~~~-~vLYVsGEES~~Qikl 137 (456)
T COG1066 108 TLLLQVAARLAKRG-KVLYVSGEESLQQIKL 137 (456)
T ss_pred HHHHHHHHHHHhcC-cEEEEeCCcCHHHHHH
Confidence 44788999999999 9999999988887753
No 316
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=36.74 E-value=1.3e+02 Score=27.79 Aligned_cols=111 Identities=10% Similarity=0.053 Sum_probs=58.7
Q ss_pred eeeeCCCCCCCCCCCCCCchhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccc
Q 046033 210 TIPVGPLVQEPIYTDNNNDTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEE 289 (434)
Q Consensus 210 ~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~ 289 (434)
-+|+|....++. .....-.++.++.....-+.+-+-........+...+..+.++.++.|..+++.++.....-
T Consensus 98 drf~~~~~v~p~-~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~----- 171 (293)
T COG2159 98 DRFVGFARVDPR-DPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGA----- 171 (293)
T ss_pred cceeeeeeeCCC-chHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCc-----
Confidence 345555544422 11223446666655533222333233333345566688899999999999988766432110
Q ss_pred cCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccC--cchHHHH
Q 046033 290 ALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCG--WGSTVEG 338 (434)
Q Consensus 290 ~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG--~~s~~ea 338 (434)
.+.. . ...+..=.......|++..++.|.| ..-..++
T Consensus 172 ~~~~-----------~-~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 172 GLEK-----------G-HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred cccc-----------C-CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 0000 0 0111112223356788888999999 6666666
No 317
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=36.73 E-value=2.3e+02 Score=25.60 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHH
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDA 84 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (434)
.-+..|++.|.++|++|.+++++...+..+... .. ++.+ . ...... .. .+
T Consensus 140 ~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~-----~~-----~~~~--------~-~~~~~~--~~---~l------ 189 (279)
T cd03789 140 ERFAALADRLLARGARVVLTGGPAERELAEEIA-----AA-----LGGP--------R-VVNLAG--KT---SL------ 189 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEechhhHHHHHHHH-----Hh-----cCCC--------c-cccCcC--CC---CH------
Confidence 346789999998899999998887666555411 00 0000 0 000000 00 11
Q ss_pred hHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecc
Q 046033 85 AKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 85 ~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 127 (434)
.++..+++ +.|++|+.- .+...+|..+|+|++.+...
T Consensus 190 --~e~~~li~--~~~l~I~~D--sg~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 190 --RELAALLA--RADLVVTND--SGPMHLAAALGTPTVALFGP 226 (279)
T ss_pred --HHHHHHHH--hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 12234555 469999753 37888999999999988754
No 318
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=36.59 E-value=1.2e+02 Score=27.81 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=16.3
Q ss_pred hHHHHHHHHhhcCCCEEEE
Q 046033 85 AKPAFCNVLETLKPTLVIY 103 (434)
Q Consensus 85 ~~~~~~~~l~~~~pDlVi~ 103 (434)
....+.+++++.+||+||+
T Consensus 111 ~~~~l~~~Ir~~~PdvViT 129 (284)
T TIGR03445 111 AAGALVAVIREVRPHVVVT 129 (284)
T ss_pred HHHHHHHHHHHhCCcEEEe
Confidence 4577888999999999997
No 319
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=36.38 E-value=1.3e+02 Score=30.19 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEe
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDL 50 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~ 50 (434)
++.+|+.|.+.|+++. +++...+.+.+ .|+.+..+
T Consensus 17 iv~lAk~L~~lGfeI~--AT~GTak~L~e-------~GI~v~~V 51 (513)
T PRK00881 17 IVEFAKALVELGVEIL--STGGTAKLLAE-------AGIPVTEV 51 (513)
T ss_pred HHHHHHHHHHCCCEEE--EcchHHHHHHH-------CCCeeEEe
Confidence 5789999999999984 66788888888 78888776
No 320
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics]
Probab=36.32 E-value=1.5e+02 Score=26.02 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=29.5
Q ss_pred HHhHHHHHHHHhhcCCCEEEEcCCCc----------------------hHHHHHHHcCCcEEEEecch
Q 046033 83 DAAKPAFCNVLETLKPTLVIYDLFQP----------------------WAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 83 ~~~~~~~~~~l~~~~pDlVi~d~~~~----------------------~~~~~A~~~giP~v~~~~~~ 128 (434)
+.+.+.+...+++++||+||+..-+. -....++.+|||++.+.+..
T Consensus 234 rkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMltSGG 301 (324)
T KOG1344|consen 234 RKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLTSGG 301 (324)
T ss_pred HHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEecCc
Confidence 33455566677788999999863211 11345677888888776554
No 321
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=36.19 E-value=77 Score=29.05 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcch
Q 046033 255 SKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGS 334 (434)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s 334 (434)
+.+...++.+++.+...+.||.+.++.+. .++.++++...+-+++.. +|-..-..+
T Consensus 47 ~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga----------------------~rlL~~ld~~~~~~~pK~--~iGySDiTa 102 (282)
T cd07025 47 DEERAADLNAAFADPEIKAIWCARGGYGA----------------------NRLLPYLDYDLIRANPKI--FVGYSDITA 102 (282)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCcCCH----------------------HHhhhhCCHHHHhhCCeE--EEEecHHHH
Confidence 45778889999999999999998876432 112244444444444444 665555555
Q ss_pred HHHHHHh--CCcEEecc
Q 046033 335 TVEGIMY--GVPIIAVP 349 (434)
Q Consensus 335 ~~eal~~--GvP~v~~P 349 (434)
+.-+++. |++.+--|
T Consensus 103 L~~~l~~~~g~~t~hGp 119 (282)
T cd07025 103 LHLALYAKTGLVTFHGP 119 (282)
T ss_pred HHHHHHHhcCceEEECc
Confidence 5555543 55555555
No 322
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=36.06 E-value=2.4e+02 Score=26.68 Aligned_cols=39 Identities=13% Similarity=-0.051 Sum_probs=27.8
Q ss_pred HHHHhhcCCCEEEEc---CCCchHHHHHHHcCCcEEEEecch
Q 046033 90 CNVLETLKPTLVIYD---LFQPWAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 90 ~~~l~~~~pDlVi~d---~~~~~~~~~A~~~giP~v~~~~~~ 128 (434)
.+..++.++|+||+= .....+..+|..+++|++.+.+..
T Consensus 71 ~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPTt~ 112 (345)
T cd08171 71 KKNPAVQEADMIFAVGGGKAIDTVKVLADKLGKPVFTFPTIA 112 (345)
T ss_pred HHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecCcc
Confidence 356777899999965 223455566666799999988765
No 323
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=35.93 E-value=55 Score=32.44 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
.++.++++..+||++|... ....+|+++|||++.+.
T Consensus 385 ~e~~~~i~~~~pDl~ig~~---~~~~~a~k~giP~i~~~ 420 (456)
T TIGR01283 385 RELLKLLLEYKADLLIAGG---KERYTALKLGIPFCDIN 420 (456)
T ss_pred HHHHHHHhhcCCCEEEEcc---chHHHHHhcCCCEEEcc
Confidence 4667788888999999873 46788889999998753
No 324
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=35.90 E-value=43 Score=27.85 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=18.7
Q ss_pred hHHHHHHh-hceeeeecccccCCcccHHHHHHHHHHHhc
Q 046033 356 FNAKMVAD-IGVGLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 356 ~na~~~~~-~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
.+-.-.++ .|+|+.+ |++++.++|.++++
T Consensus 102 ~d~~~Fe~~cGVGV~V---------T~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 102 IDVAEFEKACGVGVVV---------TPEQIEAAVEKYIE 131 (164)
T ss_dssp --HHHHHHTTTTT-------------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCeEE---------CHHHHHHHHHHHHH
Confidence 34444444 5999988 79999999999998
No 325
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=35.80 E-value=2.1e+02 Score=27.05 Aligned_cols=32 Identities=9% Similarity=-0.026 Sum_probs=25.1
Q ss_pred HHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEec
Q 046033 91 NVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~ 126 (434)
.+++ +.|++|+.= .+...+|..+|+|+|.+..
T Consensus 257 ali~--~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 257 ILIA--ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred HHHH--hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 4454 569999763 4789999999999998764
No 326
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=35.70 E-value=30 Score=27.33 Aligned_cols=31 Identities=10% Similarity=0.172 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
.-...+.++|+++|++|+++.++...+.+..
T Consensus 14 ~~~~~~l~~L~~~g~~v~vv~S~~A~~~~~~ 44 (129)
T PF02441_consen 14 YKAPDLLRRLKRAGWEVRVVLSPSAERFVTP 44 (129)
T ss_dssp GGHHHHHHHHHTTTSEEEEEESHHHHHHSHH
T ss_pred HHHHHHHHHHhhCCCEEEEEECCcHHHHhhh
Confidence 3467889999999999999999988888877
No 327
>PRK05595 replicative DNA helicase; Provisional
Probab=35.61 E-value=2.5e+02 Score=27.73 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHH-hCCCEEEEEeCCCchhhhhh
Q 046033 4 ITPYLALAKKLS-QQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 4 ~~p~l~lA~~L~-~~Gh~V~~~~~~~~~~~v~~ 35 (434)
..-++.+|..++ +.|+.|.|++.+...+.+..
T Consensus 215 T~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~ 247 (444)
T PRK05595 215 TTFALNIAEYAALREGKSVAIFSLEMSKEQLAY 247 (444)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHH
Confidence 344667777665 56999999999977766554
No 328
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=35.57 E-value=2.5e+02 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.020 Sum_probs=29.1
Q ss_pred HHHHHHhhcCCCEEEEc---CCCchHHHHHHHcCCcEEEEecch
Q 046033 88 AFCNVLETLKPTLVIYD---LFQPWAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 88 ~~~~~l~~~~pDlVi~d---~~~~~~~~~A~~~giP~v~~~~~~ 128 (434)
+..+.+++.++|+||+= .....+..+|...++|++.+.+..
T Consensus 75 ~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 75 RLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred HHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 44467777899999965 333455566667799999988764
No 329
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=35.32 E-value=3.4e+02 Score=29.47 Aligned_cols=108 Identities=7% Similarity=0.014 Sum_probs=62.6
Q ss_pred EEecccCHH---HHhcccCcceEE--eccCcchHH-HHHHhCC------------------cEEeccCCCChhhHHHHHH
Q 046033 307 VVQGWAPQA---KILGHGSIGGFI--SHCGWGSTV-EGIMYGV------------------PIIAVPMVLDQLFNAKMVA 362 (434)
Q Consensus 307 ~~~~~~p~~---~il~~~~~~~~I--~hgG~~s~~-eal~~Gv------------------P~v~~P~~~dq~~na~~~~ 362 (434)
++..-++.. +++..++| ++| ..-|+|.+. |-+++.. .++++- ..|....
T Consensus 419 ~~~~~~~~~e~~aly~~ADv-~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLS------EfaGaa~ 491 (854)
T PLN02205 419 LIDAPLKFYERVAYYVVAEC-CLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVS------EFIGCSP 491 (854)
T ss_pred EEecCCCHHHHHHHHHhccE-EEeccccccccccchheeEEccCccccccccccccccCCCCceEee------eccchhH
Confidence 343445655 44556666 333 356777554 6555432 233332 2233334
Q ss_pred hhceeeeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHh
Q 046033 363 DIGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLLQ 428 (434)
Q Consensus 363 ~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~~ 428 (434)
.++-++.+++ .+.++++++|.+.|+-. ..+-++|.+++.+.+.... ..=+..++.+|.+
T Consensus 492 ~L~~Ai~VNP------~d~~~~a~ai~~AL~m~-~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~ 551 (854)
T PLN02205 492 SLSGAIRVNP------WNIDAVADAMDSALEMA-EPEKQLRHEKHYRYVSTHDVGYWARSFLQDLER 551 (854)
T ss_pred HhCcCeEECC------CCHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 4444677764 68899999999999832 2345777777877777655 3335555555544
No 330
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=35.18 E-value=49 Score=32.83 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEE
Q 046033 89 FCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAV 122 (434)
Q Consensus 89 ~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v 122 (434)
+.+.+++.+||++|.... ...+|+++|||++
T Consensus 389 ~~~~~~~~~pDliig~s~---~~~~A~klgiP~v 419 (461)
T TIGR01860 389 FFEVLDLIKPDVIFTGPR---VGELVKKLHIPYV 419 (461)
T ss_pred HHHHHHhcCCCEEEeCCc---chhhHhhcCCCEE
Confidence 345667789999999954 5668999999998
No 331
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=35.07 E-value=52 Score=32.82 Aligned_cols=34 Identities=9% Similarity=0.127 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEE
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVA 123 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~ 123 (434)
.++.+.++..+||++|.+ .....+|+++|||++.
T Consensus 383 ~e~~~~i~~~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 383 RELYKMLKEAKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred HHHHHHHhhcCCCEEEec---CchhhhhhhcCCCEEE
Confidence 455667888899999998 4577899999999984
No 332
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=35.00 E-value=84 Score=26.43 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=29.7
Q ss_pred HHHHHHHhhcCCCEEEEcCCC---chHHHHHHHcCCcEEEEecc
Q 046033 87 PAFCNVLETLKPTLVIYDLFQ---PWAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~---~~~~~~A~~~giP~v~~~~~ 127 (434)
+.+.+++++.+||+|++-... ..+..+|.++|.|++.-...
T Consensus 81 ~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~~ 124 (181)
T cd01985 81 KALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVTK 124 (181)
T ss_pred HHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEEE
Confidence 344566777789999987332 36788999999999865433
No 333
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=34.93 E-value=95 Score=31.41 Aligned_cols=44 Identities=20% Similarity=0.077 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCCEEE----EcCCCchHHHHHHHcCCcEEEEecchH
Q 046033 86 KPAFCNVLETLKPTLVI----YDLFQPWAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi----~d~~~~~~~~~A~~~giP~v~~~~~~~ 129 (434)
...++..+....+|.+| ||-..++.+++|.+++||.|+++-.+.
T Consensus 109 Ads~e~~~~~~~~Da~V~i~~CDKi~PG~lmaa~r~niPaIfv~gGpM 156 (575)
T COG0129 109 ADSVEEVLSAHPFDGVVLIGGCDKITPGMLMAAARLNIPAIFVSGGPM 156 (575)
T ss_pred HHHHHHHHhccCcceEEEecCCCCccHHHHHHHHhcCCCEEEecCCcC
Confidence 44566778888899776 677778888999999999999877654
No 334
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=34.85 E-value=83 Score=31.48 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=30.1
Q ss_pred HHHhHHHHHHHHhhcCCCEEE----EcCCCchHHHHHHHcCCcEEEEecchHHH
Q 046033 82 FDAAKPAFCNVLETLKPTLVI----YDLFQPWAAEAAYQHDIAAVAFVTIAAAS 131 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi----~d~~~~~~~~~A~~~giP~v~~~~~~~~~ 131 (434)
-+.+...++..++...+|-+| ||-..+..+++|.++++|.|++...+..+
T Consensus 64 RelIAd~iE~~~~a~~~Dg~V~l~gCDK~~Pg~lMaaarlniPsi~v~gGpm~~ 117 (521)
T PF00920_consen 64 RELIADSIEEMVRAHPFDGMVLLGGCDKIVPGMLMAAARLNIPSIFVYGGPMLP 117 (521)
T ss_dssp HHHHHHHHHHHHTT---SEEEEE--STTCCHHHHHHHHTTTS-EEE--------
T ss_pred HHHHHHHHHHHHhCCCcceEEEeccCCCccHHHHHHHHHcCCCEEEEecCCCCC
Confidence 334466777788888899776 67777888999999999999987766543
No 335
>PLN02727 NAD kinase
Probab=34.61 E-value=74 Score=34.17 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=39.1
Q ss_pred CcceEEeccCcchHHHHHHh----CCcEEeccCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 322 SIGGFISHCGWGSTVEGIMY----GVPIIAVPMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 322 ~~~~~I~hgG~~s~~eal~~----GvP~v~~P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
.++++|+=||=||++.|+.. ++|++.+-.. .+|.-. .++++++.+.|.+++++
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG-------------rLGFLT-------di~~ee~~~~L~~Il~G 799 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFRGAVPPVVSFNLG-------------SLGFLT-------SHYFEDFRQDLRQVIHG 799 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC-------------Cccccc-------cCCHHHHHHHHHHHHcC
Confidence 45669999999999999764 6898888332 133222 25788899999999984
No 336
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=34.49 E-value=24 Score=35.04 Aligned_cols=36 Identities=19% Similarity=0.137 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
.++.++++..+||++|.... ...+|+++|||+..+.
T Consensus 394 ~el~~~i~~~~pDl~ig~~~---~~~~a~k~gIP~~~~~ 429 (466)
T TIGR01282 394 YEFEEFVEKLKPDLVGSGIK---EKYVFQKMGVPFRQMH 429 (466)
T ss_pred HHHHHHHHHhCCCEEEecCC---ccceeeecCCCccccc
Confidence 46678889999999999965 5789999999996543
No 337
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=34.30 E-value=84 Score=27.15 Aligned_cols=39 Identities=10% Similarity=0.109 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCCEEEEcCCC------chHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLFQ------PWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~------~~~~~~A~~~giP~v~~~ 125 (434)
+.+.+++++..||+|+.-... ..+..+|.++|.|++.-.
T Consensus 98 ~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv 142 (202)
T cd01714 98 KALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQITYV 142 (202)
T ss_pred HHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccceE
Confidence 345567777789999977443 578899999999988644
No 338
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=34.26 E-value=1.1e+02 Score=27.05 Aligned_cols=40 Identities=15% Similarity=0.175 Sum_probs=23.5
Q ss_pred HHHHhhcCCCEEEEc-C-CCchHHHHHHH----cCCcEEEEecchH
Q 046033 90 CNVLETLKPTLVIYD-L-FQPWAAEAAYQ----HDIAAVAFVTIAA 129 (434)
Q Consensus 90 ~~~l~~~~pDlVi~d-~-~~~~~~~~A~~----~giP~v~~~~~~~ 129 (434)
.+.+++++||++|.- + -...+...|+. .|+|+|+++-.+.
T Consensus 52 ~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~ 97 (276)
T PF01993_consen 52 TKMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPT 97 (276)
T ss_dssp HHHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGG
T ss_pred HHHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCc
Confidence 356678999988765 2 22344555554 5999999886553
No 339
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=34.15 E-value=1.9e+02 Score=25.36 Aligned_cols=38 Identities=8% Similarity=0.033 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEE
Q 046033 86 KPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVA 123 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~ 123 (434)
..+..+.+++-+.|+|+-. .++..+-.+.+.+|||++-
T Consensus 163 ~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVID 202 (230)
T COG4126 163 VIEAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVID 202 (230)
T ss_pred HHHHHHHhhhcCCCEEEEcCccHHHHHHHHHHHhCCCccc
Confidence 5566778888899999866 3333455666778999983
No 340
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=34.00 E-value=1e+02 Score=26.49 Aligned_cols=31 Identities=13% Similarity=0.344 Sum_probs=19.1
Q ss_pred hcCCCEEEEcCC---Cc----hHHHHHHHcCCcEEEEe
Q 046033 95 TLKPTLVIYDLF---QP----WAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 95 ~~~pDlVi~d~~---~~----~~~~~A~~~giP~v~~~ 125 (434)
.++||++++|-+ -+ .|+.+.-..|+|.|-+.
T Consensus 113 ~fr~dvilvDGnG~lHprGfGlACHlGvL~~lp~iGVa 150 (261)
T KOG4417|consen 113 EFRPDVILVDGNGELHPRGFGLACHLGVLSGLPSIGVA 150 (261)
T ss_pred CccccEEEEcCCceEcccccchhhhhhHhcCCCccchh
Confidence 457999999922 12 23444555677877544
No 341
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=33.99 E-value=70 Score=26.36 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCc---hHHHHHHHcCCcEEEEecc
Q 046033 86 KPAFCNVLETLKPTLVIYDLFQP---WAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d~~~~---~~~~~A~~~giP~v~~~~~ 127 (434)
...+.+++++.+||+|+.-.... .+..+|.++|.|++.-...
T Consensus 79 a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~ 123 (164)
T PF01012_consen 79 ADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTD 123 (164)
T ss_dssp HHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEE
Confidence 34566788889999999874332 4578888999999976543
No 342
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=33.98 E-value=1.4e+02 Score=26.35 Aligned_cols=84 Identities=17% Similarity=0.259 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCch--hhhhhhhcccCCCCeE--EEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINL--QSMSQNLQEKFSTSIQ--LIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEA 81 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~--~~v~~~~~~~~~~g~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (434)
-+.+|++.|.++|.+|.+++++... +.+.... .+.. ++.+ . + . ..+.
T Consensus 125 ~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~-----~~~~~~~~~~--~----~-------------~---~~l~-- 175 (247)
T PF01075_consen 125 KWAELIERLKERGYRVVLLGGPEEQEKEIADQIA-----AGLQNPVINL--A----G-------------K---TSLR-- 175 (247)
T ss_dssp HHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHH-----TTHTTTTEEE--T----T-------------T---S-HH--
T ss_pred HHHHHHHHHHhhCceEEEEccchHHHHHHHHHHH-----HhcccceEee--c----C-------------C---CCHH--
Confidence 3678999999999899888887762 2222211 1111 1111 0 0 0 0111
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecch
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~ 128 (434)
++..+++ ..|++|+.- .+...+|..+|+|++.+....
T Consensus 176 ------e~~ali~--~a~~~I~~D--tg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 176 ------ELAALIS--RADLVIGND--TGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp ------HHHHHHH--TSSEEEEES--SHHHHHHHHTT--EEEEESSS
T ss_pred ------HHHHHHh--cCCEEEecC--ChHHHHHHHHhCCEEEEecCC
Confidence 1224444 569999763 478999999999999987554
No 343
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=33.84 E-value=1.4e+02 Score=28.29 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=25.3
Q ss_pred HHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEec
Q 046033 91 NVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~ 126 (434)
.+++ +.|++|+.= .+...+|..+|+|+|.+..
T Consensus 258 ali~--~a~l~v~nD--SGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 258 ALID--HAQLFIGVD--SAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred HHHH--hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 4454 569999763 4789999999999998874
No 344
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=33.80 E-value=77 Score=31.10 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHhhcC----CCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 88 AFCNVLETLK----PTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 88 ~~~~~l~~~~----pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
++.+.+++.+ ||+||.+. ....+|+++|+|++.++
T Consensus 358 ~~~~~i~~~~~~~~~dliig~s---~~~~~a~~~~ip~i~~~ 396 (427)
T cd01971 358 AIGQSLRQSDFKYKPPIIFGSS---WERDLAKELGGKILEVS 396 (427)
T ss_pred HHHHHHHhCCCCCCCCEEEech---HHHHHHHHcCCCeEEEe
Confidence 5667777764 99999994 57789999999998765
No 345
>PRK05920 aromatic acid decarboxylase; Validated
Probab=33.79 E-value=47 Score=28.78 Aligned_cols=31 Identities=6% Similarity=0.084 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
+=.+.+.++|++.||+|+++.++...+++..
T Consensus 17 ~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 17 IYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 3467889999999999999999988887764
No 346
>PRK06321 replicative DNA helicase; Provisional
Probab=33.61 E-value=4.2e+02 Score=26.48 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHH-hCCCEEEEEeCCCchhhhhh
Q 046033 4 ITPYLALAKKLS-QQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 4 ~~p~l~lA~~L~-~~Gh~V~~~~~~~~~~~v~~ 35 (434)
..-++.+|...+ +.|+.|.|++-+...+.+..
T Consensus 240 Tafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~ 272 (472)
T PRK06321 240 TALALNIAENFCFQNRLPVGIFSLEMTVDQLIH 272 (472)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHH
Confidence 344667777776 45999999999977776554
No 347
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=32.95 E-value=70 Score=29.94 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCCCEEEEc---CCCchHHHHH----------HHcCCcEEEEecc
Q 046033 86 KPAFCNVLETLKPTLVIYD---LFQPWAAEAA----------YQHDIAAVAFVTI 127 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d---~~~~~~~~~A----------~~~giP~v~~~~~ 127 (434)
..-+.+.|..++||+||.. .+......++ ...|||++...-+
T Consensus 89 t~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGN 143 (379)
T KOG1432|consen 89 TNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGN 143 (379)
T ss_pred HHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEecc
Confidence 4456788999999999865 2222222332 3458999987654
No 348
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=32.84 E-value=4.7 Score=21.22 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=13.0
Q ss_pred CcchHHHHHHhCCcEEe
Q 046033 331 GWGSTVEGIMYGVPIIA 347 (434)
Q Consensus 331 G~~s~~eal~~GvP~v~ 347 (434)
|.|+++-+++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 56888888888888764
No 349
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=32.83 E-value=70 Score=22.53 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCc
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPIN 29 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~ 29 (434)
..+.+|..|++.|.+|+++.....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 457899999999999999987633
No 350
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=32.66 E-value=96 Score=28.65 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=52.2
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchhhhhhh--hcc------cCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHH
Q 046033 8 LALAKKLSQQNFHIYFCSTPINLQSMSQN--LQE------KFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLI 79 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~--~~~------~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (434)
=+|...|.++||.|-++.-+....+--.. |++ ...+|+-+.+++.- | ....
T Consensus 69 ~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~sr----G---------------~lGG-- 127 (323)
T COG1703 69 EALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSR----G---------------TLGG-- 127 (323)
T ss_pred HHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCC----c---------------cchh--
Confidence 36889999999999999877655543321 110 12245544444111 0 1111
Q ss_pred HHHHHhHHHHHHHHhhcCCCEEEEcCCCchH--HHHHHHcCCcEEEEe
Q 046033 80 EAFDAAKPAFCNVLETLKPTLVIYDLFQPWA--AEAAYQHDIAAVAFV 125 (434)
Q Consensus 80 ~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~~--~~~A~~~giP~v~~~ 125 (434)
+.........+++...+|+||.+-.-.+- ..++....+=.+++.
T Consensus 128 --lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~ 173 (323)
T COG1703 128 --LSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMI 173 (323)
T ss_pred --hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEec
Confidence 11112344578888899999998443322 455555555444433
No 351
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=32.60 E-value=2.2e+02 Score=22.58 Aligned_cols=51 Identities=24% Similarity=0.158 Sum_probs=27.5
Q ss_pred HHhcccCcceEEeccCcchHHHHHHh----------CCcEEeccC--CCCh-hhHHHHHHhhce
Q 046033 316 KILGHGSIGGFISHCGWGSTVEGIMY----------GVPIIAVPM--VLDQ-LFNAKMVADIGV 366 (434)
Q Consensus 316 ~il~~~~~~~~I~hgG~~s~~eal~~----------GvP~v~~P~--~~dq-~~na~~~~~~G~ 366 (434)
.+|-..+-..++.-||.||+-|.... .+|++++-. ++|. ....+++.+.|.
T Consensus 48 ~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~ 111 (133)
T PF03641_consen 48 EIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGF 111 (133)
T ss_dssp HHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCC
Confidence 44433332357788999999887432 449988852 3443 222334555553
No 352
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=32.59 E-value=34 Score=33.08 Aligned_cols=27 Identities=37% Similarity=0.661 Sum_probs=21.4
Q ss_pred CChHHHHH---HHHHHHhCCCEEEEEeCCC
Q 046033 2 GHITPYLA---LAKKLSQQNFHIYFCSTPI 28 (434)
Q Consensus 2 GH~~p~l~---lA~~L~~~Gh~V~~~~~~~ 28 (434)
||+.|++. +|+-++.+||+|.|+|+.+
T Consensus 17 GH~~~~l~ADv~aR~~r~~G~~v~~~tGtD 46 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRLRGHDVLFVTGTD 46 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEEE
T ss_pred ChhHHHHHHHHHHHHHhhcccceeeEEecc
Confidence 89997774 5888889999999998653
No 353
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=32.59 E-value=66 Score=32.81 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=47.1
Q ss_pred CHHHHhcccCcceEEe---ccCcchHHHHHHhCCcEEeccCCC-ChhhHHH--HHHhhceeeeecccccCCcccHHHHHH
Q 046033 313 PQAKILGHGSIGGFIS---HCGWGSTVEGIMYGVPIIAVPMVL-DQLFNAK--MVADIGVGLEVPRDEINQRVRKEELAR 386 (434)
Q Consensus 313 p~~~il~~~~~~~~I~---hgG~~s~~eal~~GvP~v~~P~~~-dq~~na~--~~~~~G~g~~~~~~~~~~~~~~~~l~~ 386 (434)
++.+++..+++..|-+ --| =|-+||++.|||.|.--+.+ -++.+-. .-...|+-+.-+ ...+.++..+
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWG-YTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR-----~~~n~~e~v~ 535 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWG-YTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDR-----RDKNYDESVN 535 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS--HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-S-----SSS-HHHHHH
T ss_pred CHHHHhccCceeeecccccccc-CChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeC-----CCCCHHHHHH
Confidence 3345555455533332 012 38899999999999886533 2221111 113346655554 3346666666
Q ss_pred HHHHHhc-----ccc-hHHHHHHHHHHHHHH
Q 046033 387 VFKQVVE-----QEE-GQQIKRKAKELSESI 411 (434)
Q Consensus 387 ~v~~ll~-----~~~-~~~~~~~a~~l~~~~ 411 (434)
.+.+.|. +++ -...|.++++|++.+
T Consensus 536 ~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 536 QLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 6665553 111 346788888888776
No 354
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=32.54 E-value=43 Score=28.43 Aligned_cols=20 Identities=5% Similarity=0.014 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCEEEEEeCCC
Q 046033 9 ALAKKLSQQNFHIYFCSTPI 28 (434)
Q Consensus 9 ~lA~~L~~~Gh~V~~~~~~~ 28 (434)
.|+++...|||+||-++...
T Consensus 15 ~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 15 RILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred HHHHHHHhCCCeeEEEEeCh
Confidence 57888999999999888753
No 355
>PRK07206 hypothetical protein; Provisional
Probab=32.49 E-value=1.6e+02 Score=28.57 Aligned_cols=35 Identities=17% Similarity=0.030 Sum_probs=24.1
Q ss_pred HHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcE
Q 046033 87 PAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAA 121 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~ 121 (434)
..+.+++++.++|.||.. .....+..+++.+|+|+
T Consensus 60 ~~l~~~~~~~~~d~vi~~~e~~~~~~a~l~~~l~l~~ 96 (416)
T PRK07206 60 DDLVEFLRKLGPEAIIAGAESGVELADRLAEILTPQY 96 (416)
T ss_pred HHHHHHHHHcCCCEEEECCCccHHHHHHHHHhcCCCc
Confidence 355567888899999954 33344566677888883
No 356
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=32.39 E-value=1.3e+02 Score=30.37 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=35.2
Q ss_pred hHHHHHHHHhhcCCCEEE----EcCCCchHHHHHHHcCCcEEEEecchH
Q 046033 85 AKPAFCNVLETLKPTLVI----YDLFQPWAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 85 ~~~~~~~~l~~~~pDlVi----~d~~~~~~~~~A~~~giP~v~~~~~~~ 129 (434)
....++..++...+|-+| ||-..+..+.+|.+++||.|++.-.+.
T Consensus 97 iA~~iE~~~~a~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGpm 145 (552)
T PRK00911 97 IADSIETVVNAHWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGPI 145 (552)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 355666777788889665 677778889999999999999876653
No 357
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=32.30 E-value=51 Score=30.56 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=29.8
Q ss_pred HhcccCcceEEeccCcchHHHHHH----hCCcEEeccCCCC
Q 046033 317 ILGHGSIGGFISHCGWGSTVEGIM----YGVPIIAVPMVLD 353 (434)
Q Consensus 317 il~~~~~~~~I~hgG~~s~~eal~----~GvP~v~~P~~~d 353 (434)
.|..-.++++|.=||.+|...|.. .++|+|.+|-..|
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTID 126 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTID 126 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccccc
Confidence 455567888999999999877753 6999999997654
No 358
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=32.19 E-value=3.8e+02 Score=24.21 Aligned_cols=32 Identities=25% Similarity=0.220 Sum_probs=24.1
Q ss_pred CCCEEE-Ec-CCCchHHHHHHHcCCcEEEEecch
Q 046033 97 KPTLVI-YD-LFQPWAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 97 ~pDlVi-~d-~~~~~~~~~A~~~giP~v~~~~~~ 128 (434)
.||+|| .| .....++.=|.++|||+|.+.-+.
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 599886 45 344567888999999999986554
No 359
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=32.15 E-value=2.4e+02 Score=27.70 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCEEEEEeCCC
Q 046033 8 LALAKKLSQQNFHIYFCSTPI 28 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~ 28 (434)
+++|+.|.++|++|++.....
T Consensus 18 ~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 18 LALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred HHHHHHHHHCCCEEEEEeCCc
Confidence 489999999999999887653
No 360
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.15 E-value=1.4e+02 Score=24.58 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=37.3
Q ss_pred hhceeeeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHh
Q 046033 363 DIGVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKELSESIKKKG-DDEEINVVEKLLQ 428 (434)
Q Consensus 363 ~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~~~~~~-~~~~~~~ve~l~~ 428 (434)
++.+.+.+.. .++++++.+++.|-.+-. --+.|+....|..- .+ ...+.+.++.|++
T Consensus 92 ~l~V~L~f~s---mdDFsP~~Va~qVp~L~k---LLeaR~~L~~L~~~---ldg~~~~e~~l~~lL~ 149 (169)
T COG3516 92 ELAVDLTFES---MDDFSPDAVARQVPELKK---LLEARTALADLKGP---LDGNPAFEELLQDLLK 149 (169)
T ss_pred eeeeeeeecc---cccCCHHHHHHhhHHHHH---HHHHHHHHHHHhcc---ccCcHHHHHHHHHHHc
Confidence 5567777776 678999999988776644 33356555555444 34 6666666666654
No 361
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=32.15 E-value=99 Score=25.59 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=23.0
Q ss_pred eEEEEecCcccCCHHHHHHHHHHHhhCCC
Q 046033 243 VVYVSFGSEYFLSKEEMNELASGLLLSEV 271 (434)
Q Consensus 243 vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~ 271 (434)
.||+++||........++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 79999999876555668888888877664
No 362
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=31.62 E-value=1.3e+02 Score=24.30 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=28.4
Q ss_pred CceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEe
Q 046033 241 SSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVR 278 (434)
Q Consensus 241 ~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~ 278 (434)
..+|++++|+......+.++.+++.+. .+.+++++..
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 459999999988777888888888884 3567666644
No 363
>PRK11914 diacylglycerol kinase; Reviewed
Probab=31.61 E-value=1.1e+02 Score=28.24 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=22.6
Q ss_pred ceEEeccCcchHHHHH----HhCCcEEeccC
Q 046033 324 GGFISHCGWGSTVEGI----MYGVPIIAVPM 350 (434)
Q Consensus 324 ~~~I~hgG~~s~~eal----~~GvP~v~~P~ 350 (434)
+.+|.-||=||+.|++ ..++|+-++|.
T Consensus 66 d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 66 DALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred CEEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 4599999999999887 34789999995
No 364
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.43 E-value=51 Score=33.47 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=24.7
Q ss_pred CCChHHHHH---HHHHHHhCCCEEEEEeCCCchh
Q 046033 1 HGHITPYLA---LAKKLSQQNFHIYFCSTPINLQ 31 (434)
Q Consensus 1 ~GH~~p~l~---lA~~L~~~Gh~V~~~~~~~~~~ 31 (434)
.||+++.++ +|+-++.+||+|.|+|+.+...
T Consensus 22 lGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHG 55 (558)
T COG0143 22 LGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHG 55 (558)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCC
Confidence 389998776 4888889999999998774443
No 365
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.40 E-value=98 Score=28.00 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=22.3
Q ss_pred cceEEeccCcchHHHHHH----hCCcEEecc
Q 046033 323 IGGFISHCGWGSTVEGIM----YGVPIIAVP 349 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~----~GvP~v~~P 349 (434)
++++|+=||=||++.|+. .++|++.+-
T Consensus 34 ~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN 64 (259)
T PRK00561 34 ADYLFVLGGDGFFVSTAANYNCAGCKVVGIN 64 (259)
T ss_pred CCEEEEECCcHHHHHHHHHhcCCCCcEEEEe
Confidence 456999999999998875 578998884
No 366
>PRK13059 putative lipid kinase; Reviewed
Probab=31.22 E-value=1.6e+02 Score=27.15 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=22.4
Q ss_pred cceEEeccCcchHHHHH---H---hCCcEEeccC
Q 046033 323 IGGFISHCGWGSTVEGI---M---YGVPIIAVPM 350 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal---~---~GvP~v~~P~ 350 (434)
.+.+|.-||=||+.|++ + .++|+-++|.
T Consensus 57 ~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 57 YKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCEEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 45699999999988875 2 3588999996
No 367
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=30.94 E-value=60 Score=32.72 Aligned_cols=31 Identities=16% Similarity=0.292 Sum_probs=25.5
Q ss_pred HHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEE
Q 046033 91 NVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAF 124 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~ 124 (434)
+.+++.+||++|+... ...+|+++|||++..
T Consensus 392 ~~l~~~~~Dllig~s~---~~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 392 EAMEMLKPDIILTGKR---PGEVSKKMRVPYLNA 422 (513)
T ss_pred HHHHhcCCCEEEecCc---cchhHhhcCCCEEEc
Confidence 5668889999999965 447899999999764
No 368
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=30.85 E-value=1.7e+02 Score=28.06 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhhhh
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINLQSMS 34 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~ 34 (434)
=++.+|..+.+.|..|.|++.+...+.+.
T Consensus 98 Lllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 98 LLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred HHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 35678888888899999999887666544
No 369
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=30.66 E-value=1.7e+02 Score=24.07 Aligned_cols=51 Identities=10% Similarity=0.221 Sum_probs=34.6
Q ss_pred HHHHHHhHHHHHHHHhhcCCCEEEEc-CCC-ch-------------HHHHHHHcCCcEEEEecchH
Q 046033 79 IEAFDAAKPAFCNVLETLKPTLVIYD-LFQ-PW-------------AAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~-~~-------------~~~~A~~~giP~v~~~~~~~ 129 (434)
...+....+.+.+++++++||.+..+ .|. -- ...++...|+|++-+.+...
T Consensus 39 ~~RL~~I~~~l~~~i~~y~P~~~aiE~~F~~~N~~sa~~lg~arGvilla~~~~~ipv~Ey~P~~v 104 (156)
T TIGR00228 39 PSRLKLIYAGVTEIITQFQPNYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQV 104 (156)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeHHhhccCHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHH
Confidence 34444556788899999999999877 221 11 24566677899987776543
No 370
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=30.44 E-value=3.1e+02 Score=25.88 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=30.9
Q ss_pred hCCcEEeccCCCCh-----hhHHHHHHhhce-eeeeccc--------ccCCcccHHHHHHHHHHH
Q 046033 341 YGVPIIAVPMVLDQ-----LFNAKMVADIGV-GLEVPRD--------EINQRVRKEELARVFKQV 391 (434)
Q Consensus 341 ~GvP~v~~P~~~dq-----~~na~~~~~~G~-g~~~~~~--------~~~~~~~~~~l~~~v~~l 391 (434)
.+.|+++.|.+.-. +..+.....+|+ |+.++.. +-..+++++++++.++++
T Consensus 261 ~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i 325 (335)
T PRK08673 261 THLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKL 325 (335)
T ss_pred cCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHH
Confidence 47999999876533 366777777787 4666531 012335566665555554
No 371
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=30.27 E-value=4.7e+02 Score=24.58 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=40.7
Q ss_pred CceeeeCCCCCCCCCCCCCCchhhhhhhcCCCCCceEEEEecCccc--CCHHHHHHHHHHHhhCCCcEEEEEec
Q 046033 208 KETIPVGPLVQEPIYTDNNNDTKIMDWLSRKEPSSVVYVSFGSEYF--LSKEEMNELASGLLLSEVSFIWVVRF 279 (434)
Q Consensus 208 ~~~~~vGpl~~~~~~~~~~~~~~~~~~l~~~~~~~vV~vs~Gs~~~--~~~~~~~~i~~~l~~~~~~~i~~~~~ 279 (434)
.++.++||.... ..++.+.+..+.. +|.++-||... .+.-.+..|.++++++...++.....
T Consensus 167 ~~V~~~~~~~~~------a~~eaveAI~~AD----~IviGPgSl~TSIlP~Lllp~I~eaLr~~~ap~i~v~n~ 230 (323)
T COG0391 167 HRVRLEGPEKPS------AAPEAVEAIKEAD----LIVIGPGSLFTSILPILLLPGIAEALRETVAPIVYVCNL 230 (323)
T ss_pred eEEEEecCCCCC------CCHHHHHHHHhCC----EEEEcCCccHhhhchhhchhHHHHHHHhCCCCEEEeccC
Confidence 467777743222 2455666655542 89999998654 44566788999998877777766443
No 372
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=30.16 E-value=89 Score=26.23 Aligned_cols=116 Identities=11% Similarity=0.111 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHH-HhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCC---CC--CCCC-----CCCCC
Q 046033 2 GHITPYLALAKKL-SQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPEL---HD--PYNH-----TTKNI 70 (434)
Q Consensus 2 GH~~p~l~lA~~L-~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~---~~--~~~~-----~~~~~ 70 (434)
|.+.-.+..|++| .+.|.+|.+.-+ ...+.+.+. .++..+.++... .+-+ .. .... .....
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~------~~iPVV~I~~s~-~Dil~al~~a~~~~~~Iavv~~~~~ 88 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKH------VSIPVVEIPISG-FDILRALAKAKKYGPKIAVVGYPNI 88 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC-------SS-EEEE---H-HHHHHHHHHCCCCTSEEEEEEESS-
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHh------CCCCEEEECCCH-hHHHHHHHHHHhcCCcEEEEecccc
Confidence 4456678899999 889999985544 455555552 345565553220 0000 00 0000 00000
Q ss_pred ccccHHHHHHHHHH-----------hHHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecchH
Q 046033 71 PRHLIPTLIEAFDA-----------AKPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 71 ~~~~~~~~~~~~~~-----------~~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~ 129 (434)
. .....+...+.. ......+-++..+.|+||.+. .+...|+++|+|++.+.+...
T Consensus 89 ~-~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~---~~~~~A~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 89 I-PGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGG---VVCRLARKLGLPGVLIESGEE 154 (176)
T ss_dssp S-CCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESH---HHHHHHHHTTSEEEESS--HH
T ss_pred c-HHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCH---HHHHHHHHcCCcEEEEEecHH
Confidence 0 112222232211 122233334456899999994 468999999999998876443
No 373
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=30.14 E-value=86 Score=30.27 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=29.4
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEec
Q 046033 86 KPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~ 126 (434)
..++.+.+++.+||++|.+. .....++++|+|++.++.
T Consensus 337 ~~~~~~~~~~~~pdl~ig~~---~~~~~~~~~~ip~~~~~~ 374 (399)
T cd00316 337 LEELEELIRELKPDLIIGGS---KGRYIAKKLGIPLVRIGF 374 (399)
T ss_pred HHHHHHHHhhcCCCEEEECC---cHHHHHHHhCCCEEEcCC
Confidence 34556778888999999995 367788889999986553
No 374
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=30.04 E-value=1.9e+02 Score=29.23 Aligned_cols=45 Identities=11% Similarity=0.052 Sum_probs=35.1
Q ss_pred hHHHHHHHHhhcCCCEEE----EcCCCchHHHHHHHcCCcEEEEecchH
Q 046033 85 AKPAFCNVLETLKPTLVI----YDLFQPWAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 85 ~~~~~~~~l~~~~pDlVi----~d~~~~~~~~~A~~~giP~v~~~~~~~ 129 (434)
....++..++...+|-+| ||-..+..+++|.++++|.|++.-.+.
T Consensus 77 IAdsiE~~~~~~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGpm 125 (535)
T TIGR00110 77 IADSVETMVNAHRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGPM 125 (535)
T ss_pred HHHHHHHHHhcCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 345566777788889665 787778889999999999999876653
No 375
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=29.93 E-value=94 Score=30.88 Aligned_cols=36 Identities=11% Similarity=0.009 Sum_probs=28.3
Q ss_pred HHHHHHHhh--cCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLET--LKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
.++.+.+++ .+||++|... ....+|+++|||++.+.
T Consensus 376 ~~l~~~i~~~~~~~Dliig~s---~~~~~a~k~gip~~~~g 413 (461)
T TIGR02931 376 WELESRIKNQGLELDLILGHS---KGRFISIDYNIPMVRVG 413 (461)
T ss_pred HHHHHHHHhcCCCCCEEEECc---chHHHHHHcCCCEEEec
Confidence 455667775 5899999995 46889999999998764
No 376
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=29.85 E-value=1e+02 Score=27.71 Aligned_cols=37 Identities=16% Similarity=0.044 Sum_probs=24.5
Q ss_pred HHHhhcCCCEEEEcCC--CchHHHHHHHcCCcEEEEecc
Q 046033 91 NVLETLKPTLVIYDLF--QPWAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~--~~~~~~~A~~~giP~v~~~~~ 127 (434)
|.+...+||+||+... .......-+..|+|++.+.+.
T Consensus 66 E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~ 104 (260)
T PRK03379 66 ERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDAT 104 (260)
T ss_pred HHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCC
Confidence 4556689999998632 122334446789999988643
No 377
>PRK13055 putative lipid kinase; Reviewed
Probab=29.83 E-value=2.6e+02 Score=26.31 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=22.2
Q ss_pred cceEEeccCcchHHHHHHh------CCcEEeccC
Q 046033 323 IGGFISHCGWGSTVEGIMY------GVPIIAVPM 350 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~~------GvP~v~~P~ 350 (434)
.+++|.-||=||+.|++.. ..|+-++|.
T Consensus 60 ~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 60 FDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 3459999999999998743 467888895
No 378
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=29.82 E-value=1.7e+02 Score=27.42 Aligned_cols=29 Identities=34% Similarity=0.591 Sum_probs=18.7
Q ss_pred CcceEEeccCcchHHHH-----HHh--CCcEEeccCC
Q 046033 322 SIGGFISHCGWGSTVEG-----IMY--GVPIIAVPMV 351 (434)
Q Consensus 322 ~~~~~I~hgG~~s~~ea-----l~~--GvP~v~~P~~ 351 (434)
+++++|-=||. |+.++ +.+ |+|.+.+|..
T Consensus 78 ~~d~IIaiGGG-s~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 78 EVDAVIAVGGG-STLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred CcCEEEEeCCc-hHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 45558877764 33332 223 9999999974
No 379
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=29.79 E-value=73 Score=31.06 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=28.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEE
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAF 124 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~ 124 (434)
.++.+.++..+||++|.+.. ...+|+++|+|++..
T Consensus 346 ~e~~~~i~~~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 346 RELKKLLKEKKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred HHHHHHHhhcCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 45667888889999999943 568899999999854
No 380
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=29.68 E-value=72 Score=22.73 Aligned_cols=31 Identities=19% Similarity=0.027 Sum_probs=21.2
Q ss_pred cCCCEEEEc--CCCchHHHHHHHcCCcEEEEec
Q 046033 96 LKPTLVIYD--LFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 96 ~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~~ 126 (434)
.+.--||++ ....=++.+|+.+|||+++-..
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 456667766 3445578999999999997543
No 381
>PRK08506 replicative DNA helicase; Provisional
Probab=29.53 E-value=4.4e+02 Score=26.29 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 4 ITPYLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 4 ~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
..-++.+|....+.|+.|.|++-+...+.+..
T Consensus 206 T~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~ 237 (472)
T PRK08506 206 TTLCLNMALKALNQDKGVAFFSLEMPAEQLML 237 (472)
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHH
Confidence 34566777777788999999999987776654
No 382
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=29.52 E-value=2.6e+02 Score=25.62 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=20.3
Q ss_pred cceEEeccCcchHHHHHHh-----CCc-EEeccC
Q 046033 323 IGGFISHCGWGSTVEGIMY-----GVP-IIAVPM 350 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~~-----GvP-~v~~P~ 350 (434)
.+.+|..||=||+.|++.. ..| +-++|.
T Consensus 58 ~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 4559999999999997643 344 445885
No 383
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=29.48 E-value=77 Score=29.82 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchh
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQ 31 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~ 31 (434)
.+.|++.|.++|++|.+++..+..+
T Consensus 54 v~~L~~~L~~~G~~~~IlSRGYg~~ 78 (326)
T PF02606_consen 54 VIWLARLLQARGYRPAILSRGYGRK 78 (326)
T ss_pred HHHHHHHHHhcCCceEEEcCCCCCC
Confidence 4678999999999999999865543
No 384
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=29.46 E-value=70 Score=34.93 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=30.5
Q ss_pred HHHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEec
Q 046033 86 KPAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~ 126 (434)
..++.+++++.+||++|+... ...+|+++|||++....
T Consensus 378 ~~el~~~i~~~~pDLlig~~~---~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 378 TAGLLRVMREKMPDLIVAGGK---TKFLALKTRTPFLDINH 415 (917)
T ss_pred HHHHHHHHHhcCCCEEEecCc---hhhHHHHcCCCeEEccC
Confidence 446667888899999999743 57789999999997653
No 385
>PRK09620 hypothetical protein; Provisional
Probab=29.39 E-value=59 Score=28.81 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCEEEEEeCC
Q 046033 8 LALAKKLSQQNFHIYFCSTP 27 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~ 27 (434)
..||++|.++|++|+++.+.
T Consensus 33 s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCC
Confidence 46899999999999999764
No 386
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=29.39 E-value=1.3e+02 Score=28.57 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=9.2
Q ss_pred CCcEEeccCCC
Q 046033 342 GVPIIAVPMVL 352 (434)
Q Consensus 342 GvP~v~~P~~~ 352 (434)
++|+|.+|...
T Consensus 124 ~~P~i~VPTta 134 (357)
T cd08181 124 ALPVVAIPTTA 134 (357)
T ss_pred CCCEEEEeCCC
Confidence 78999999753
No 387
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=29.36 E-value=3.5e+02 Score=26.26 Aligned_cols=98 Identities=12% Similarity=0.152 Sum_probs=57.3
Q ss_pred CCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEE-EecccCHHHH
Q 046033 239 EPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMV-VQGWAPQAKI 317 (434)
Q Consensus 239 ~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~-~~~~~p~~~i 317 (434)
.+||.|-+|+ .-....-+..+.+.|++.|..+++--..+.++ ..++ .+.+ . ..+- +.+.-... +
T Consensus 183 ~~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG-~aME-----~Li~----~-G~~~~VlDlTttE-l 247 (403)
T PF06792_consen 183 EDKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGTGG-RAME-----RLIR----E-GQFDGVLDLTTTE-L 247 (403)
T ss_pred CCCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCCch-HHHH-----HHHH----c-CCcEEEEECcHHH-H
Confidence 4477887764 44456788889999999998877654444332 1111 1110 1 1111 22333332 1
Q ss_pred hcccCcceEEeccCcchHHHHHHhCCcEEeccCCCC
Q 046033 318 LGHGSIGGFISHCGWGSTVEGIMYGVPIIAVPMVLD 353 (434)
Q Consensus 318 l~~~~~~~~I~hgG~~s~~eal~~GvP~v~~P~~~d 353 (434)
-. .+-.-|..+|..=+-.|...|+|+|+.|-.-|
T Consensus 248 ~d--~l~GGv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 248 AD--ELFGGVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred HH--HHhCCCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 11 11124677888899999999999999995443
No 388
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=29.19 E-value=2.5e+02 Score=26.18 Aligned_cols=33 Identities=12% Similarity=0.028 Sum_probs=25.5
Q ss_pred HHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEecc
Q 046033 91 NVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 127 (434)
.+++ +.|++|+.= .+...+|..+|+|+|.+...
T Consensus 247 ali~--~a~l~I~~D--SGp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 247 DLIA--LAKAVVTND--SGLMHVAAALNRPLVALYGS 279 (334)
T ss_pred HHHH--hCCEEEeeC--CHHHHHHHHcCCCEEEEECC
Confidence 4555 569999763 47899999999999987653
No 389
>PHA02698 hypothetical protein; Provisional
Probab=29.15 E-value=2e+02 Score=20.08 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=25.9
Q ss_pred CCcccHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Q 046033 376 NQRVRKEELARVFKQVVEQEEGQQIKRKAKELSES 410 (434)
Q Consensus 376 ~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l~~~ 410 (434)
-..++++++..++.+.|+ +-.|+..++-++.+
T Consensus 38 V~~CsPEdMs~mLD~FLe---diq~ksElqLLsqE 69 (89)
T PHA02698 38 VPQCSPEDMSDMLDNFLE---DIQYKSELQLLSQE 69 (89)
T ss_pred hccCCHHHHHHHHHHHHH---HHHHHHHHHHhhHH
Confidence 456899999999999999 77888877766544
No 390
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=28.98 E-value=1.4e+02 Score=25.03 Aligned_cols=39 Identities=15% Similarity=0.031 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEE
Q 046033 86 KPAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAF 124 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~ 124 (434)
...+.+.++..++|+|++= .-...+..+|..+|+|++..
T Consensus 40 ~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~ 80 (175)
T PRK02304 40 IDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPV 80 (175)
T ss_pred HHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEE
Confidence 3444445555678999865 23356778899999999854
No 391
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=28.95 E-value=4.7e+02 Score=26.87 Aligned_cols=114 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHHHHhcc------cCcceEEeccCcc
Q 046033 260 NELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGH------GSIGGFISHCGWG 333 (434)
Q Consensus 260 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~------~~~~~~I~hgG~~ 333 (434)
+.+++.|++.|.+.++-+.+.... .+.+...+..-+.+....=.....++. ....++++|.|.|
T Consensus 5 ~~l~~~L~~~Gv~~vFg~pG~~~~----------~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG 74 (586)
T PRK06276 5 EAIIKALEAEGVKIIFGYPGGALL----------PFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPG 74 (586)
T ss_pred HHHHHHHHHcCCCEEEECCCcchH----------HHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCcc
Q ss_pred ------hHHHHHHhCCcEEec-------------cCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhc
Q 046033 334 ------STVEGIMYGVPIIAV-------------PMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 334 ------s~~eal~~GvP~v~~-------------P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
.+.+|.+.++|+|++ -+..||...++.+.+ ....+. +++++...|++.+.
T Consensus 75 ~~n~l~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk--~s~~v~--------~~~~i~~~i~~A~~ 143 (586)
T PRK06276 75 ATNLVTGIATAYADSSPVIALTGQVPTKLIGNDAFQEIDALGIFMPITK--HNFQIK--------KPEEIPEIFRAAFE 143 (586)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccHhhHHhhhcc--eEEecC--------CHHHHHHHHHHHHH
No 392
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=28.91 E-value=2.5e+02 Score=25.00 Aligned_cols=39 Identities=15% Similarity=0.322 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhCCC-EEEEEeCCCchh-------hhhhhhcccCCCCeEEEEe
Q 046033 4 ITPYLALAKKLSQQNF-HIYFCSTPINLQ-------SMSQNLQEKFSTSIQLIDL 50 (434)
Q Consensus 4 ~~p~l~lA~~L~~~Gh-~V~~~~~~~~~~-------~v~~~~~~~~~~g~~f~~~ 50 (434)
++|..++..+|+.-|. +|.+++ |+..+ .+++ .||+...+
T Consensus 105 tt~~~A~~~AL~alg~~RIalvT-PY~~~v~~~~~~~l~~-------~G~eV~~~ 151 (239)
T TIGR02990 105 VTPSSAAVDGLAALGVRRISLLT-PYTPETSRPMAQYFAV-------RGFEIVNF 151 (239)
T ss_pred eCHHHHHHHHHHHcCCCEEEEEC-CCcHHHHHHHHHHHHh-------CCcEEeee
Confidence 4678899999999984 555544 43322 2333 78888766
No 393
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=28.90 E-value=4.3e+02 Score=24.96 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=25.2
Q ss_pred HHHhhcCCCEEEEc---CCCchHHHHHHHcCCcEEEEecch
Q 046033 91 NVLETLKPTLVIYD---LFQPWAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 91 ~~l~~~~pDlVi~d---~~~~~~~~~A~~~giP~v~~~~~~ 128 (434)
+.+++ ++|+||+= .....+..+|...++|++.+.++.
T Consensus 75 ~~~~~-~~d~IIaIGGGs~~D~aK~vA~~~~~p~i~IPTTa 114 (348)
T cd08175 75 KELER-DTDLIIAVGSGTINDITKYVSYKTGIPYISVPTAP 114 (348)
T ss_pred HHhhc-cCCEEEEECCcHHHHHHHHHHHhcCCCEEEecCcc
Confidence 33444 89999864 333455666677799999887763
No 394
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=28.82 E-value=96 Score=30.75 Aligned_cols=37 Identities=14% Similarity=0.042 Sum_probs=28.7
Q ss_pred HHHHHHHHhh--cCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 86 KPAFCNVLET--LKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 86 ~~~~~~~l~~--~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
..++.+++++ .+||++|... ....+|+++|||++.+.
T Consensus 368 ~~e~~~~i~~~~~~~dliig~s---~~~~~A~~~gip~~~~g 406 (454)
T cd01973 368 LWELEKRIKNKGLELDLILGHS---KGRYIAIDNNIPMVRVG 406 (454)
T ss_pred HHHHHHHHHhcCCCCCEEEECC---ccHHHHHHcCCCEEEec
Confidence 3455667776 4699999985 46899999999998764
No 395
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=28.79 E-value=4.9e+02 Score=24.38 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=25.2
Q ss_pred HHHHHHhhcCCCEEEEc---CCCchHHHHHHHcCCcEEEEecch
Q 046033 88 AFCNVLETLKPTLVIYD---LFQPWAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 88 ~~~~~l~~~~pDlVi~d---~~~~~~~~~A~~~giP~v~~~~~~ 128 (434)
.+.++.+..++|+.|.- .+..-++.-|...||+.+++.+..
T Consensus 79 sv~ea~~~~~~D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteG 122 (317)
T PTZ00187 79 TVKEAKKATGADASVIYVPPPHAASAIIEAIEAEIPLVVCITEG 122 (317)
T ss_pred CHHHHhcccCCCEEEEecCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 44456655568987755 222334455556799998776554
No 396
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=28.67 E-value=5e+02 Score=24.77 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCC-CEEEEEeCCCchh
Q 046033 7 YLALAKKLSQQN-FHIYFCSTPINLQ 31 (434)
Q Consensus 7 ~l~lA~~L~~~G-h~V~~~~~~~~~~ 31 (434)
.-.++..|.+.| .+|.+++.....+
T Consensus 11 l~~l~~~l~~~~~~~~lvv~~~~~~~ 36 (370)
T cd08551 11 IEKLGEEIKNLGGRKALIVTDPGLVK 36 (370)
T ss_pred HHHHHHHHHHcCCCeEEEEeCcchhh
Confidence 446777888777 6787777664443
No 397
>cd08783 Death_MALT1 Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1. Death domain (DD) similar to that found in Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1). Malt1, together with Bcl10 (B-cell lymphoma 10), are the integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins
Probab=28.54 E-value=1.9e+02 Score=21.46 Aligned_cols=36 Identities=17% Similarity=0.016 Sum_probs=30.0
Q ss_pred CChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHHhcc
Q 046033 352 LDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQVVEQ 394 (434)
Q Consensus 352 ~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~ 394 (434)
.|+..|....++.|.+.... +++.++.....+++.-
T Consensus 20 ~~~~gWr~LAe~lg~~~~fr-------~S~~el~~cslkvl~p 55 (97)
T cd08783 20 ADGKGWRKLAELAGSRGRFR-------LSCLDLEQCSLKVLEP 55 (97)
T ss_pred CccCCHHHHHHHHccCCccc-------cCHHHHHHHHHHHhcC
Confidence 45677888888888888665 6999999999999984
No 398
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.37 E-value=49 Score=26.01 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCc
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPIN 29 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~ 29 (434)
...+=+...|..+|.+|++++++..
T Consensus 19 ssaiYls~klkkkgf~v~VaateAa 43 (148)
T COG4081 19 SSAIYLSHKLKKKGFDVTVAATEAA 43 (148)
T ss_pred hHHHHHHHHhhccCccEEEecCHhh
Confidence 3456678999999999999999733
No 399
>PRK04940 hypothetical protein; Provisional
Probab=28.34 E-value=1.5e+02 Score=25.14 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=26.3
Q ss_pred CCCEEEEc-CCCchHHHHHHHcCCcEEEEecchH
Q 046033 97 KPTLVIYD-LFQPWAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 97 ~pDlVi~d-~~~~~~~~~A~~~giP~v~~~~~~~ 129 (434)
++.++|.. .--++|..+|.++|+|.|.+.|..-
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~ 93 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLF 93 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCC
Confidence 46777766 4457889999999999999988754
No 400
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.20 E-value=2.5e+02 Score=20.73 Aligned_cols=19 Identities=11% Similarity=-0.165 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhCCCcEEEE
Q 046033 258 EMNELASGLLLSEVSFIWV 276 (434)
Q Consensus 258 ~~~~i~~~l~~~~~~~i~~ 276 (434)
....+-+.+++.|..+++.
T Consensus 11 ~~~~~~~~~~~~G~~~~~h 29 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHH 29 (97)
T ss_pred cHHHHHHHHHHcCCEEEEE
Confidence 3455666677788888888
No 401
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=28.07 E-value=66 Score=24.95 Aligned_cols=32 Identities=0% Similarity=-0.005 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 4 ITPYLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 4 ~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
+.|.+.|.-...-+||+++++-+..+.+.+..
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~~~ 40 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYVDD 40 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccccc
Confidence 45777888888899999999999888776654
No 402
>PLN02891 IMP cyclohydrolase
Probab=28.04 E-value=1.5e+02 Score=29.68 Aligned_cols=44 Identities=14% Similarity=0.250 Sum_probs=32.9
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCC
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDP 62 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~ 62 (434)
.+.+|+.|.+.|+++ +++....+.+.. .|+....+. +..|+|+-
T Consensus 35 i~~fAk~L~~~gveI--iSTgGTak~L~e-------~Gi~v~~Vs---d~TgfPEi 78 (547)
T PLN02891 35 LALLANGLQELGYTI--VSTGGTASALEA-------AGVSVTKVE---ELTNFPEM 78 (547)
T ss_pred HHHHHHHHHHCCCEE--EEcchHHHHHHH-------cCCceeeHH---hccCCchh
Confidence 568999999988775 577778888888 889887772 33555544
No 403
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=28.00 E-value=5.7e+02 Score=26.27 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=21.9
Q ss_pred cceEEeccCcc------hHHHHHHhCCcEEecc
Q 046033 323 IGGFISHCGWG------STVEGIMYGVPIIAVP 349 (434)
Q Consensus 323 ~~~~I~hgG~~------s~~eal~~GvP~v~~P 349 (434)
..++++|.|.| .+.+|...++|+|++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44588888865 6788999999999995
No 404
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=28.00 E-value=1.8e+02 Score=25.08 Aligned_cols=40 Identities=18% Similarity=0.053 Sum_probs=27.6
Q ss_pred HHHHHHHHhhc--CCCEEEEc--CCCchHHHHHHHcCCcEEEEe
Q 046033 86 KPAFCNVLETL--KPTLVIYD--LFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 86 ~~~~~~~l~~~--~pDlVi~d--~~~~~~~~~A~~~giP~v~~~ 125 (434)
...+.+.+++. .+|+|++= .-.+.+..+|..+++|++...
T Consensus 51 ~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~r 94 (202)
T PRK00455 51 GRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVR 94 (202)
T ss_pred HHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEe
Confidence 34444445544 78998865 334568899999999998654
No 405
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=27.83 E-value=46 Score=29.98 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
=+.+||.+|.++|+.|+|++.++....+..
T Consensus 121 La~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 121 LAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred HHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 357888899988999999998877777766
No 406
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=27.76 E-value=1.9e+02 Score=28.11 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.5
Q ss_pred HHHHHHHhhcCCCEEEEcC
Q 046033 87 PAFCNVLETLKPTLVIYDL 105 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~ 105 (434)
.++.+++++.+||++|...
T Consensus 333 ~~l~~~i~~~~pDllig~~ 351 (407)
T TIGR01279 333 HRQLQRIRATRPDLVVTGL 351 (407)
T ss_pred HHHHHHHHhcCCCEEecCc
Confidence 3455788889999999985
No 407
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=27.75 E-value=1.2e+02 Score=28.29 Aligned_cols=72 Identities=15% Similarity=0.068 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccCHHHHhcccCcceEEeccCcch
Q 046033 255 SKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAPQAKILGHGSIGGFISHCGWGS 334 (434)
Q Consensus 255 ~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p~~~il~~~~~~~~I~hgG~~s 334 (434)
+.+....+.+++.+...+.||.+.++.+. .++.++++...+-.++.. +|-..-..+
T Consensus 51 ~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~----------------------~rlL~~lD~~~i~~~PK~--fiGySDiTa 106 (308)
T cd07062 51 PEERAEELMAAFADPSIKAIIPTIGGDDS----------------------NELLPYLDYELIKKNPKI--FIGYSDITA 106 (308)
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCcccCH----------------------hhhhhhcCHHHHhhCCCE--EEeccHHHH
Confidence 45778889999999999999998875432 223344444444444444 665555555
Q ss_pred HHHHHH--hCCcEEeccC
Q 046033 335 TVEGIM--YGVPIIAVPM 350 (434)
Q Consensus 335 ~~eal~--~GvP~v~~P~ 350 (434)
+.-+++ .|.+.+.-|.
T Consensus 107 L~~al~~~~g~~t~hGp~ 124 (308)
T cd07062 107 LHLAIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHHHHhcCCeEEECcc
Confidence 555553 2555555553
No 408
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=27.74 E-value=1.7e+02 Score=30.01 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=34.5
Q ss_pred HHHHHHHHhhcCCCEEE----EcCCCchHHHHHHHcCCcEEEEecchH
Q 046033 86 KPAFCNVLETLKPTLVI----YDLFQPWAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi----~d~~~~~~~~~A~~~giP~v~~~~~~~ 129 (434)
...++..++...+|-+| ||-..++.+++|.++++|.|++...+.
T Consensus 100 AdsiE~~~~a~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGpm 147 (615)
T PRK12448 100 ADSVEYMVNAHCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGPM 147 (615)
T ss_pred HHHHHHHhhCCCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCCc
Confidence 45566677778889665 777778889999999999999876653
No 409
>PRK10867 signal recognition particle protein; Provisional
Probab=27.57 E-value=2.7e+02 Score=27.37 Aligned_cols=78 Identities=26% Similarity=0.306 Sum_probs=37.9
Q ss_pred hHHHHHHhCCcEEeccCCC--C--hhhHHHHHHhh--ceeeeecccccCCcccHHHHHHHHHHHhcccchHHHHHHHHHH
Q 046033 334 STVEGIMYGVPIIAVPMVL--D--QLFNAKMVADI--GVGLEVPRDEINQRVRKEELARVFKQVVEQEEGQQIKRKAKEL 407 (434)
Q Consensus 334 s~~eal~~GvP~v~~P~~~--d--q~~na~~~~~~--G~g~~~~~~~~~~~~~~~~l~~~v~~ll~~~~~~~~~~~a~~l 407 (434)
.+.-+...|+|+..+.... | .+++..++.+. |.| +-..|.+.+.+..+ .+.++++
T Consensus 259 alsi~~~~~~PI~fig~Ge~v~DLe~f~p~~~~~~ilgmg------------D~~~l~e~~~~~~~-------~~~~~~~ 319 (433)
T PRK10867 259 ALSIRAVTGKPIKFIGTGEKLDDLEPFHPDRMASRILGMG------------DVLSLIEKAQEVVD-------EEKAEKL 319 (433)
T ss_pred HHHHHHHHCcCEEEEeCCCccccCccCCHHHHHHHHhCCC------------ChHHHHHHHHHhhC-------HHHHHHH
Confidence 4444556799998874321 1 23333333332 444 22234444444443 3345566
Q ss_pred HHHHHhcchHHHHHHHHHHHhhhc
Q 046033 408 SESIKKKGDDEEINVVEKLLQLVK 431 (434)
Q Consensus 408 ~~~~~~~~~~~~~~~ve~l~~~~~ 431 (434)
.+++.++. -.+.++.+.+.++.|
T Consensus 320 ~~~~~~g~-f~l~d~~~q~~~~~k 342 (433)
T PRK10867 320 AKKLKKGK-FDLEDFLEQLQQMKK 342 (433)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHh
Confidence 66666532 234555555555443
No 410
>PRK11823 DNA repair protein RadA; Provisional
Probab=27.52 E-value=95 Score=30.68 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhhhh
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINLQSMS 34 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~ 34 (434)
=++.+|..+.++|..|.|++.++..+.+.
T Consensus 96 L~lq~a~~~a~~g~~vlYvs~Ees~~qi~ 124 (446)
T PRK11823 96 LLLQVAARLAAAGGKVLYVSGEESASQIK 124 (446)
T ss_pred HHHHHHHHHHhcCCeEEEEEccccHHHHH
Confidence 45677888888899999999987776654
No 411
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=27.44 E-value=3.2e+02 Score=21.77 Aligned_cols=34 Identities=21% Similarity=0.576 Sum_probs=22.7
Q ss_pred CHHHHhcccCcceEEeccC-----cchHHHH---HHhCCcEEec
Q 046033 313 PQAKILGHGSIGGFISHCG-----WGSTVEG---IMYGVPIIAV 348 (434)
Q Consensus 313 p~~~il~~~~~~~~I~hgG-----~~s~~ea---l~~GvP~v~~ 348 (434)
.-..++..+++ +|-.=| ||+-++| ++.|+|.|++
T Consensus 68 RT~~li~~aDv--vVvrFGekYKQWNaAfDAg~aaAlgKplI~l 109 (144)
T TIGR03646 68 RTRKLIEKADV--VIALFGEKYKQWNAAFDAGYAAALGKPLIIL 109 (144)
T ss_pred HHHHHHhhCCE--EEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 33455666666 766555 6666654 7789999888
No 412
>PRK09165 replicative DNA helicase; Provisional
Probab=27.43 E-value=4.1e+02 Score=26.72 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=26.9
Q ss_pred HHHHHhhcCCCEEEEcCCCch---------------------HHHHHHHcCCcEEEEecchH
Q 046033 89 FCNVLETLKPTLVIYDLFQPW---------------------AAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 89 ~~~~l~~~~pDlVi~d~~~~~---------------------~~~~A~~~giP~v~~~~~~~ 129 (434)
++++.+..++|+||.|++... ...+|+.++||++.++...-
T Consensus 333 ir~l~~~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR 394 (497)
T PRK09165 333 ARRLKRQHGLDLLVVDYLQLIRGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQLSR 394 (497)
T ss_pred HHHHHHhcCCCEEEEcchHhccCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccc
Confidence 344444567999999943210 13567888999999886543
No 413
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=27.38 E-value=1.3e+02 Score=25.07 Aligned_cols=35 Identities=17% Similarity=0.150 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEe
Q 046033 8 LALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDL 50 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~ 50 (434)
..++++|.++||+|+.++.......- . .+++.+..
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~~~~~~~-~-------~~~~~~~~ 46 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRSPSKAED-S-------PGVEIIQG 46 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESSGGGHHH-C-------TTEEEEES
T ss_pred HHHHHHHHHCCCEEEEEecCchhccc-c-------ccccccee
Confidence 35899999999999999976442222 3 67887554
No 414
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=27.37 E-value=70 Score=29.94 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=29.6
Q ss_pred HhcccCcceEEeccCcchHHHHHH---hCCcEEeccCCCC
Q 046033 317 ILGHGSIGGFISHCGWGSTVEGIM---YGVPIIAVPMVLD 353 (434)
Q Consensus 317 il~~~~~~~~I~hgG~~s~~eal~---~GvP~v~~P~~~d 353 (434)
.|..-.++++|.=||.+|..-|.. +|+|+|.+|-.-|
T Consensus 87 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 87 QLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
Confidence 355567888999999999887755 5999999997554
No 415
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=27.29 E-value=4.6e+02 Score=24.58 Aligned_cols=34 Identities=15% Similarity=0.081 Sum_probs=26.3
Q ss_pred HHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEec
Q 046033 89 FCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 89 ~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~ 126 (434)
+..+++ +.|++|+.= .+...+|..+|+|.|.+..
T Consensus 254 l~ali~--~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 254 LAALID--HARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred HHHHHH--hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 334555 569999873 5789999999999998764
No 416
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=27.25 E-value=1.9e+02 Score=25.80 Aligned_cols=81 Identities=7% Similarity=-0.024 Sum_probs=48.6
Q ss_pred CCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHhHHHHHHHHhhcC
Q 046033 18 NFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAAKPAFCNVLETLK 97 (434)
Q Consensus 18 Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (434)
.....+.+++.+.-+... -|++.+.+- +..++ .+ . .... ..++.+.+++.+
T Consensus 149 ~~~~~v~~h~~~~Y~~~~-------~gl~~~~~~------~~~~~-~~----p---s~~~--------l~~l~~~ik~~~ 199 (256)
T PF01297_consen 149 PGRPVVVYHDAFQYFAKR-------YGLKVIGVI------EISPG-EE----P---SPKD--------LAELIKLIKENK 199 (256)
T ss_dssp SGGEEEEEESTTHHHHHH-------TT-EEEEEE------SSSSS-SS----S----HHH--------HHHHHHHHHHTT
T ss_pred cCCeEEEEChHHHHHHHh-------cCCceeeee------ccccc-cC----C---CHHH--------HHHHHHHhhhcC
Confidence 345666677777777777 778887662 11111 00 0 1111 235568889999
Q ss_pred CCEEEEcCCCc--hHHHHHHHcCCcEEEEecc
Q 046033 98 PTLVIYDLFQP--WAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 98 pDlVi~d~~~~--~~~~~A~~~giP~v~~~~~ 127 (434)
..+|+++.... .+-.+|+.+|+|++.+.+.
T Consensus 200 v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 200 VKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp -SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred CcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 99999994433 3467889999999876655
No 417
>PRK03094 hypothetical protein; Provisional
Probab=27.15 E-value=59 Score=23.30 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=15.6
Q ss_pred HHHHHHHHhCCCEEEEEeC
Q 046033 8 LALAKKLSQQNFHIYFCST 26 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~ 26 (434)
-.|.+.|+++||+|.=+.+
T Consensus 11 s~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 11 TDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred HHHHHHHHHCCCEEEecCc
Confidence 4588999999999986654
No 418
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=27.13 E-value=3.2e+02 Score=25.08 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCEEEEEeCCCch
Q 046033 9 ALAKKLSQQNFHIYFCSTPINL 30 (434)
Q Consensus 9 ~lA~~L~~~Gh~V~~~~~~~~~ 30 (434)
+|...|...||+|++++.....
T Consensus 13 ~L~~~L~~~gh~v~iltR~~~~ 34 (297)
T COG1090 13 ALTARLRKGGHQVTILTRRPPK 34 (297)
T ss_pred HHHHHHHhCCCeEEEEEcCCcc
Confidence 4677888889999999976433
No 419
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=26.98 E-value=1e+02 Score=27.63 Aligned_cols=43 Identities=19% Similarity=0.043 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCCEEEEcCCCc------hHHHHHHHcCCcEEEEecchH
Q 046033 87 PAFCNVLETLKPTLVIYDLFQP------WAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~------~~~~~A~~~giP~v~~~~~~~ 129 (434)
+.+.+++++.+.|+||=-.+-| -++.+|+..|||++.+..-++
T Consensus 56 e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~ 104 (257)
T COG2099 56 EGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPW 104 (257)
T ss_pred HHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCcc
Confidence 4566899999999998432322 346788999999998875443
No 420
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.82 E-value=67 Score=31.07 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCC
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTP 27 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~ 27 (434)
||+.|+..|. .|+++||+|+++..+
T Consensus 49 Ghlv~l~kL~-~fQ~aGh~~ivLigd 73 (401)
T COG0162 49 GHLVPLMKLR-RFQDAGHKPIVLIGD 73 (401)
T ss_pred hhHHHHHHHH-HHHHCCCeEEEEecc
Confidence 8999888775 688999999999874
No 421
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=26.64 E-value=96 Score=26.68 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=25.8
Q ss_pred cCCCEEE-Ec-CCCchHHHHHHHcCCcEEEEecchH
Q 046033 96 LKPTLVI-YD-LFQPWAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 96 ~~pDlVi-~d-~~~~~~~~~A~~~giP~v~~~~~~~ 129 (434)
..||+|| .| .....|+.=|.++|||+|.+..+..
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCC
Confidence 3699776 55 4556788899999999999875543
No 422
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=26.57 E-value=2.8e+02 Score=22.87 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=20.8
Q ss_pred cceEEeccCcc------hHHHHHHhCCcEEecc
Q 046033 323 IGGFISHCGWG------STVEGIMYGVPIIAVP 349 (434)
Q Consensus 323 ~~~~I~hgG~~------s~~eal~~GvP~v~~P 349 (434)
..+++++.|.| .+.+|...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 33477777755 6788999999999995
No 423
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=26.55 E-value=1e+02 Score=30.60 Aligned_cols=35 Identities=14% Similarity=0.087 Sum_probs=27.0
Q ss_pred HHHHHHh-hcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 88 AFCNVLE-TLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 88 ~~~~~l~-~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
++.+.++ ..+||++|.... ...+|.++|||++.+.
T Consensus 374 el~~~l~~~~~~dllig~s~---~~~~A~klgip~~~~g 409 (457)
T TIGR02932 374 ELEKRIKAKLDIDLIMGHSK---GRYVAIDANIPMVRVG 409 (457)
T ss_pred HHHHHHhhcCCCCEEEECCc---hHHHHHHcCCCEEEec
Confidence 4455444 568999999954 6889999999998654
No 424
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=26.41 E-value=2.6e+02 Score=31.28 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCCEEEEcCC--------CchHHHHHHHcCCcEEEE
Q 046033 87 PAFCNVLETLKPTLVIYDLF--------QPWAAEAAYQHDIAAVAF 124 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~--------~~~~~~~A~~~giP~v~~ 124 (434)
+.+.+++++.+.|+||.... .+.--..|-..|||+++.
T Consensus 994 ~~~~~~i~~~~i~lvin~~~~~~~~~~~g~~iRr~Ai~~~ip~~t~ 1039 (1050)
T TIGR01369 994 PNILDLIKNGEIELVINTTSKGAGTATDGYKIRREALDYGVPLITT 1039 (1050)
T ss_pred ccHHHHHHcCCeEEEEECCCCCcccccccHHHHHHHHHcCCCEEec
Confidence 45668889999999999743 234567788899999954
No 425
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=26.38 E-value=91 Score=30.57 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=28.8
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
.++.+++++.+||++|.... ......|.++|+|++.+.
T Consensus 363 ~e~~~~l~~~~pDl~i~~~~-~~~~~~~~~~gip~~~~~ 400 (426)
T cd01972 363 YQFYNLLKRVKPDFIIFRHG-GLFPDATVYLGIPVVPLN 400 (426)
T ss_pred HHHHHHHHHhCCCEEEEcCC-CccHHHHHhcCCCEEecc
Confidence 46778899999999997532 345666788999998764
No 426
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=26.37 E-value=3.7e+02 Score=23.97 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=31.9
Q ss_pred chhhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEec
Q 046033 228 DTKIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRF 279 (434)
Q Consensus 228 ~~~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~ 279 (434)
.+.+.++++.. +.+|.+||....+++++.++++.+ |.++++.+..
T Consensus 87 ~~~v~~ll~~G----~~rViiGt~av~~p~~v~~~~~~~---g~rivv~lD~ 131 (241)
T COG0106 87 LEDVEALLDAG----VARVIIGTAAVKNPDLVKELCEEY---GDRIVVALDA 131 (241)
T ss_pred HHHHHHHHHCC----CCEEEEecceecCHHHHHHHHHHc---CCcEEEEEEc
Confidence 44666677754 557778998888899998888777 4566665543
No 427
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=26.32 E-value=2.7e+02 Score=21.09 Aligned_cols=37 Identities=16% Similarity=-0.001 Sum_probs=24.3
Q ss_pred HHhcccCcceEEecc---CcchHHHH---HHhCCcEEeccCCC
Q 046033 316 KILGHGSIGGFISHC---GWGSTVEG---IMYGVPIIAVPMVL 352 (434)
Q Consensus 316 ~il~~~~~~~~I~hg---G~~s~~ea---l~~GvP~v~~P~~~ 352 (434)
..+..+++-.++-.+ +.||..|. .+.|+|++++-.-.
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~ 99 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDD 99 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCC
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCC
Confidence 455656664444444 78999885 77899999885433
No 428
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=26.29 E-value=48 Score=30.90 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCch
Q 046033 7 YLALAKKLSQQNFHIYFCSTPINL 30 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~~ 30 (434)
.+.||+.|.++|++|.+++..+..
T Consensus 47 v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 47 VVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCC
Confidence 467899999999999999987655
No 429
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=26.27 E-value=87 Score=30.42 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=27.8
Q ss_pred HHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 88 AFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 88 ~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
++.+.+++.+||++|.... ....|+++|+|++...
T Consensus 346 ~~~~~~~~~~pdl~ig~~~---~~~~a~~~gip~~~~~ 380 (406)
T cd01967 346 ELEELVEKLKPDLILSGIK---EKYVAQKLGIPFLDLH 380 (406)
T ss_pred HHHHHHHhcCCCEEEeCCc---chHHHHhcCCCEEecC
Confidence 5556778889999999853 5678888999997654
No 430
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.15 E-value=1.1e+02 Score=28.81 Aligned_cols=36 Identities=31% Similarity=0.284 Sum_probs=24.3
Q ss_pred HHHhhcCCCEEEEcCCCc------hHHHHHHHcCCcEEEEec
Q 046033 91 NVLETLKPTLVIYDLFQP------WAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~~------~~~~~A~~~giP~v~~~~ 126 (434)
+.+...+||+||...... .....-+++|+|++.+..
T Consensus 85 E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~ 126 (342)
T cd01139 85 EKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDF 126 (342)
T ss_pred HHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeC
Confidence 556668999999863321 234445677999998763
No 431
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=26.05 E-value=85 Score=28.92 Aligned_cols=28 Identities=11% Similarity=0.220 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 8 LALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
..+|..|.+.||+|+++..+...+.+.+
T Consensus 13 ~~~a~~L~~~g~~V~~~~r~~~~~~~~~ 40 (305)
T PRK12921 13 GTFGGRLLEAGRDVTFLVRPKRAKALRE 40 (305)
T ss_pred HHHHHHHHHCCCceEEEecHHHHHHHHh
Confidence 3578899999999999988544455555
No 432
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=26.01 E-value=81 Score=26.62 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
+-...+.+.|+++|++|.++.++...+++..
T Consensus 14 ~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~ 44 (177)
T TIGR02113 14 YKAADLTSQLTKLGYDVTVLMTQAATQFITP 44 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEEChHHHhhccH
Confidence 4456889999999999999999887777664
No 433
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=26.01 E-value=1.1e+02 Score=19.06 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHhcccchHHHHHHHHHH
Q 046033 380 RKEELARVFKQVVEQEEGQQIKRKAKEL 407 (434)
Q Consensus 380 ~~~~l~~~v~~ll~~~~~~~~~~~a~~l 407 (434)
++++|..||..+.++ .-++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g--~~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNG--KMSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTT--SS-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 468899999999884 25667666653
No 434
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=25.82 E-value=93 Score=23.94 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCchhh
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPINLQS 32 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~~~~ 32 (434)
.|.....-++..|.+.||+|.++......+.
T Consensus 11 ~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~ 41 (119)
T cd02067 11 GHDIGKNIVARALRDAGFEVIDLGVDVPPEE 41 (119)
T ss_pred hhhHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 5788888899999999999998876544433
No 435
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=25.80 E-value=3.9e+02 Score=22.24 Aligned_cols=97 Identities=16% Similarity=0.283 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCCEEEEEeCCCch-hhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHhH
Q 046033 8 LALAKKLSQQNFHIYFCSTPINL-QSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAAK 86 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~~~-~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (434)
-.+.+...+.|..|.+++..... +.+.....+.+ +|+.++... ++. . -....
T Consensus 38 ~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~y-P~l~ivg~~-----~g~----f-----------------~~~~~ 90 (172)
T PF03808_consen 38 PDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRY-PGLRIVGYH-----HGY----F-----------------DEEEE 90 (172)
T ss_pred HHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHC-CCeEEEEec-----CCC----C-----------------ChhhH
Confidence 34555666778999999876433 22222221222 678876541 111 0 11123
Q ss_pred HHHHHHHhhcCCCEEEEcCCCc----hHHHHHHHcCCcEEEEecchHHHH
Q 046033 87 PAFCNVLETLKPTLVIYDLFQP----WAAEAAYQHDIAAVAFVTIAAASF 132 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~----~~~~~A~~~giP~v~~~~~~~~~~ 132 (434)
+.+.+.+++.+||+|+.-.-++ +.......++.+ +.++....+..
T Consensus 91 ~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~d~ 139 (172)
T PF03808_consen 91 EAIINRINASGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAFDF 139 (172)
T ss_pred HHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchhhh
Confidence 4566788889999999986655 556666677777 44544444433
No 436
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=25.62 E-value=65 Score=30.17 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCch
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINL 30 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~ 30 (434)
-.+.||++|++||..|.+++.....
T Consensus 65 ~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 65 VVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred HHHHHHHHHHhcCCeeEEEecCcCC
Confidence 4678999999999999999987555
No 437
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=25.59 E-value=4.7e+02 Score=25.01 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=31.7
Q ss_pred hhhhhhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecC
Q 046033 230 KIMDWLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFH 280 (434)
Q Consensus 230 ~~~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~ 280 (434)
++.+.++......+-..++||+++ -.++.++++.|.+.+.+...+
T Consensus 6 ~~~~~~~~y~~~~~~i~~~~shsa------L~I~~gAkeeGf~ti~v~~~~ 50 (358)
T PRK13278 6 EILEILKKYDLDNITIATIGSHSS------LQILKGAKKEGFRTIAICKKK 50 (358)
T ss_pred HHHHHHHhcCcccceEEEEecccH------HHHHHHHHHCCCeEEEEEeCC
Confidence 355566555444466778888765 348889999999988887654
No 438
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=25.55 E-value=68 Score=25.09 Aligned_cols=29 Identities=14% Similarity=0.114 Sum_probs=22.5
Q ss_pred ceEEeccCcchHHHHHHh----C-----CcEEeccCCC
Q 046033 324 GGFISHCGWGSTVEGIMY----G-----VPIIAVPMVL 352 (434)
Q Consensus 324 ~~~I~hgG~~s~~eal~~----G-----vP~v~~P~~~ 352 (434)
+.+|.-||-||+.|++-. + .|+.++|...
T Consensus 51 d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 51 DRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred CEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 459999999999998642 3 6788888754
No 439
>PRK13054 lipid kinase; Reviewed
Probab=25.44 E-value=3.5e+02 Score=24.88 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=22.5
Q ss_pred cceEEeccCcchHHHHHHh------C--CcEEeccC
Q 046033 323 IGGFISHCGWGSTVEGIMY------G--VPIIAVPM 350 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~~------G--vP~v~~P~ 350 (434)
.+.+|..||=||+.|++.. + +|+-++|.
T Consensus 57 ~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 57 VATVIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred CCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 4569999999999998754 3 58888995
No 440
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=25.41 E-value=1.5e+02 Score=20.46 Aligned_cols=35 Identities=9% Similarity=0.147 Sum_probs=24.8
Q ss_pred HHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEe
Q 046033 9 ALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDL 50 (434)
Q Consensus 9 ~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~ 50 (434)
.|-.+|.+.||.|..+........-.. ..+-|+.+
T Consensus 3 ~I~~~L~~~G~~v~~i~~~~~~~~k~p-------l~mf~veL 37 (68)
T PF07530_consen 3 EIKEELKDQGHPVRNIHNMHSRNTKKP-------LNMFFVEL 37 (68)
T ss_pred HHHHHHHHcCCceEEEEccccCCCCCC-------ceEEEEee
Confidence 467899999999999988766632222 44666555
No 441
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=25.27 E-value=1.1e+02 Score=29.65 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~ 125 (434)
.++.+++++.+||+++.+. .....|+++++|++...
T Consensus 331 ~~~~~~l~~~~pdl~ig~~---~~~~~a~~~~~~~~~~~ 366 (398)
T PF00148_consen 331 EEIEELLEELKPDLLIGSS---HERYLAKKLGIPLIRIG 366 (398)
T ss_dssp HHHHHHHHHHT-SEEEESH---HHHHHHHHTT--EEE-S
T ss_pred HHHHHHHHhcCCCEEEech---hhHHHHHHhCCCeEEEe
Confidence 4566788888999999994 47888899988887654
No 442
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=25.27 E-value=1.8e+02 Score=27.75 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=9.4
Q ss_pred CCcEEeccCCC
Q 046033 342 GVPIIAVPMVL 352 (434)
Q Consensus 342 GvP~v~~P~~~ 352 (434)
++|+|.+|...
T Consensus 122 ~~p~i~VPTt~ 132 (370)
T cd08551 122 ALPLIAIPTTA 132 (370)
T ss_pred CCCEEEecCCC
Confidence 79999999754
No 443
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=25.23 E-value=93 Score=26.41 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCchhhhhh
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~ 35 (434)
+-...+.+.|+++|++|.++.++...+++..
T Consensus 15 ~~~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 15 YKAADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred HHHHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 3457889999999999999999988888765
No 444
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=25.09 E-value=80 Score=28.03 Aligned_cols=31 Identities=6% Similarity=0.125 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhC--CCEEEEEeCCCchhhhhh
Q 046033 5 TPYLALAKKLSQQ--NFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 5 ~p~l~lA~~L~~~--Gh~V~~~~~~~~~~~v~~ 35 (434)
.-.+.+.+.|+++ ||+|+++.++...+.+..
T Consensus 14 ~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 14 VESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 5678999999999 999999999988888776
No 445
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.07 E-value=2.2e+02 Score=26.91 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=20.0
Q ss_pred cCcceEEeccCcchHHHH-----HHhCCcEEeccCC
Q 046033 321 GSIGGFISHCGWGSTVEG-----IMYGVPIIAVPMV 351 (434)
Q Consensus 321 ~~~~~~I~hgG~~s~~ea-----l~~GvP~v~~P~~ 351 (434)
.+++++|-=||. |+.++ +.+|+|.|.+|..
T Consensus 77 ~~~d~iiavGGG-s~~D~aK~ia~~~~~p~i~VPTt 111 (345)
T cd08171 77 QEADMIFAVGGG-KAIDTVKVLADKLGKPVFTFPTI 111 (345)
T ss_pred cCCCEEEEeCCc-HHHHHHHHHHHHcCCCEEEecCc
Confidence 345658877664 44443 4459999999974
No 446
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=24.99 E-value=66 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCEEEEEeCCC
Q 046033 8 LALAKKLSQQNFHIYFCSTPI 28 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~ 28 (434)
.++|..|..+||+|++.+.+.
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 578999999999999999874
No 447
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=24.98 E-value=4.7e+02 Score=22.91 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=27.1
Q ss_pred cchHHHHHHhCCcEEeccCCCC--hhhHHHHHHhhceeee
Q 046033 332 WGSTVEGIMYGVPIIAVPMVLD--QLFNAKMVADIGVGLE 369 (434)
Q Consensus 332 ~~s~~eal~~GvP~v~~P~~~d--q~~na~~~~~~G~g~~ 369 (434)
..|...|+..|+|+.++|-..+ +..-...+-+.|+...
T Consensus 171 l~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA~~i 210 (220)
T TIGR00732 171 LITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGAALI 210 (220)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCCEEE
Confidence 5677888999999999996544 3444556667786433
No 448
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=24.88 E-value=1e+02 Score=26.71 Aligned_cols=33 Identities=24% Similarity=0.276 Sum_probs=25.5
Q ss_pred CCCEEE-Ec-CCCchHHHHHHHcCCcEEEEecchH
Q 046033 97 KPTLVI-YD-LFQPWAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 97 ~pDlVi-~d-~~~~~~~~~A~~~giP~v~~~~~~~ 129 (434)
.||+|| .| .....|+.=|.++|||+|.+..+..
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 899886 55 4456788889999999999875543
No 449
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=24.69 E-value=69 Score=23.01 Aligned_cols=21 Identities=5% Similarity=0.113 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCEEEEEeCCC
Q 046033 8 LALAKKLSQQNFHIYFCSTPI 28 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~ 28 (434)
-.+.++|+++||+|.=+....
T Consensus 11 s~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred hHHHHHHHHCCCEEEecCCcc
Confidence 467899999999999887654
No 450
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=24.69 E-value=2.4e+02 Score=27.94 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhhhh
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINLQSMS 34 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~ 34 (434)
=++.++..+.++|+.|.|++.++..+.+.
T Consensus 110 L~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 110 LLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred HHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 45677888888899999999987766554
No 451
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=24.65 E-value=4.4e+02 Score=22.43 Aligned_cols=58 Identities=16% Similarity=0.393 Sum_probs=35.1
Q ss_pred EEeccCcchHHHH--HHhCCcEEeccCCCChhhHHHHHHhhce-eeeecccccCCcccHHHHHHHHHHHhc
Q 046033 326 FISHCGWGSTVEG--IMYGVPIIAVPMVLDQLFNAKMVADIGV-GLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 326 ~I~hgG~~s~~ea--l~~GvP~v~~P~~~dq~~na~~~~~~G~-g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
++..+|++.+... ..++........ +-+..++.++..|+ +.++. ++++|..++++.+.
T Consensus 104 V~NN~~yg~~~~~q~~~~~~~~~~~~~--~~~d~~~lA~a~G~~~~~v~--------~~~el~~al~~a~~ 164 (196)
T cd02013 104 VFRNRQWGAEKKNQVDFYNNRFVGTEL--ESESFAKIAEACGAKGITVD--------KPEDVGPALQKAIA 164 (196)
T ss_pred EEECchhHHHHHHHHHHcCCCcccccC--CCCCHHHHHHHCCCEEEEEC--------CHHHHHHHHHHHHh
Confidence 5688888876532 223322222111 12667888888886 45553 68889888888874
No 452
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=24.58 E-value=85 Score=29.48 Aligned_cols=37 Identities=24% Similarity=0.354 Sum_probs=29.5
Q ss_pred HhcccCcceEEeccCcchHHHHHH---hCCcEEeccCCCC
Q 046033 317 ILGHGSIGGFISHCGWGSTVEGIM---YGVPIIAVPMVLD 353 (434)
Q Consensus 317 il~~~~~~~~I~hgG~~s~~eal~---~GvP~v~~P~~~d 353 (434)
.|..-.++++|.=||.+|...|.. .|+|+|.+|-..|
T Consensus 89 ~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTID 128 (324)
T TIGR02483 89 NLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTID 128 (324)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccC
Confidence 344557888999999999987755 5999999997544
No 453
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=24.57 E-value=1.6e+02 Score=28.23 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=19.8
Q ss_pred CcceEEeccCcchHHHH-----HHhCCcEEeccCC
Q 046033 322 SIGGFISHCGWGSTVEG-----IMYGVPIIAVPMV 351 (434)
Q Consensus 322 ~~~~~I~hgG~~s~~ea-----l~~GvP~v~~P~~ 351 (434)
.++++|.=||.. +.++ +..|+|++.+|..
T Consensus 84 ~~d~IIavGGGs-v~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 84 GCDVVIGIGGGK-TLDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred CCCEEEEecChH-HHHHHHHHHHHcCCCEEEeCCc
Confidence 456688887744 3332 4459999999974
No 454
>PRK08322 acetolactate synthase; Reviewed
Probab=24.46 E-value=5.2e+02 Score=26.25 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=21.9
Q ss_pred cceEEeccCcc------hHHHHHHhCCcEEecc
Q 046033 323 IGGFISHCGWG------STVEGIMYGVPIIAVP 349 (434)
Q Consensus 323 ~~~~I~hgG~~------s~~eal~~GvP~v~~P 349 (434)
..++++|.|.| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 44488888755 7889999999999984
No 455
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=24.44 E-value=4.1e+02 Score=23.57 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=25.6
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCC---Cchhhhhh
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTP---INLQSMSQ 35 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~---~~~~~v~~ 35 (434)
|-......|+.+|+++|+.|.++-.+ .+.+.+..
T Consensus 15 GKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimG 51 (272)
T COG2894 15 GKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMG 51 (272)
T ss_pred CccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhc
Confidence 44556778999999999999998766 45555544
No 456
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=24.39 E-value=1.8e+02 Score=24.74 Aligned_cols=38 Identities=5% Similarity=-0.032 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCEEEEc--CCCchHHHHHHHcCCcEEEEe
Q 046033 87 PAFCNVLETLKPTLVIYD--LFQPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d--~~~~~~~~~A~~~giP~v~~~ 125 (434)
..+.+.+ ..++|+|++- .-.+.+..+|..+++|++...
T Consensus 42 ~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~r 81 (187)
T PRK12560 42 KEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMAR 81 (187)
T ss_pred HHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEec
Confidence 3344444 5689999965 333577788999999988644
No 457
>PRK10490 sensor protein KdpD; Provisional
Probab=24.36 E-value=1.1e+02 Score=33.30 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=26.9
Q ss_pred CChHHHHHHHHHHHhCCCEEEEEeCCCc-hhhhhh
Q 046033 2 GHITPYLALAKKLSQQNFHIYFCSTPIN-LQSMSQ 35 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~~~~~~-~~~v~~ 35 (434)
|-.+.|+.-|++|+++|++|.+..-+.+ +....+
T Consensus 36 gkt~~ml~~a~~~~~~g~dvv~g~~e~h~r~~t~~ 70 (895)
T PRK10490 36 GKTYAMLQEAQRLRAQGLDVLVGVVETHGRKETAA 70 (895)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEEEeeCCCCHHHHH
Confidence 5678999999999999999998876655 444444
No 458
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=24.36 E-value=7.9e+02 Score=25.29 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=45.8
Q ss_pred cceEEeccCcchH---HHHHHhCCcEEeccCCC---ChhhHHHHHHhh--ce--eeeecccccCCcccHHHHHHHHHHHh
Q 046033 323 IGGFISHCGWGST---VEGIMYGVPIIAVPMVL---DQLFNAKMVADI--GV--GLEVPRDEINQRVRKEELARVFKQVV 392 (434)
Q Consensus 323 ~~~~I~hgG~~s~---~eal~~GvP~v~~P~~~---dq~~na~~~~~~--G~--g~~~~~~~~~~~~~~~~l~~~v~~ll 392 (434)
++++|+-.|...- .=|-.--+|+|.+|... +...-..-+.+. |+ +.+-. .+..+..-++..|..+-
T Consensus 466 ~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i----~~~~~aa~~a~~i~~~~ 541 (577)
T PLN02948 466 LQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAI----GNATNAGLLAVRMLGAS 541 (577)
T ss_pred CCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEec----CChHHHHHHHHHHHhcC
Confidence 3447766664221 12223468999999743 333333445555 63 32222 23345555555443332
Q ss_pred cccchHHHHHHHHHHHHHHHhc
Q 046033 393 EQEEGQQIKRKAKELSESIKKK 414 (434)
Q Consensus 393 ~~~~~~~~~~~a~~l~~~~~~~ 414 (434)
+++++++.+..++.+++.
T Consensus 542 ----~~~~~~~~~~~~~~~~~~ 559 (577)
T PLN02948 542 ----DPDLLDKMEAYQEDMRDM 559 (577)
T ss_pred ----CHHHHHHHHHHHHHHHHH
Confidence 478888888888887763
No 459
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=24.24 E-value=83 Score=27.33 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCEEEEEeCCCch
Q 046033 8 LALAKKLSQQNFHIYFCSTPINL 30 (434)
Q Consensus 8 l~lA~~L~~~Gh~V~~~~~~~~~ 30 (434)
-+||..|...||+|++.++....
T Consensus 14 ~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 14 SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred HHHHHHHHhCCCeEEEecCCChh
Confidence 36889999999999999765443
No 460
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=24.16 E-value=1.2e+02 Score=26.52 Aligned_cols=36 Identities=25% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHhhcCCCEEEEcCCCch--HHHHHHHcCCcEEEEe
Q 046033 90 CNVLETLKPTLVIYDLFQPW--AAEAAYQHDIAAVAFV 125 (434)
Q Consensus 90 ~~~l~~~~pDlVi~d~~~~~--~~~~A~~~giP~v~~~ 125 (434)
.+.+.+.+||+||+...... ....-+..|+|++.+.
T Consensus 51 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gipvv~~~ 88 (235)
T cd01149 51 AEGVLSLKPTLVIASDEAGPPEALDQLRAAGVPVVTVP 88 (235)
T ss_pred HHHhhccCCCEEEEcCCCCCHHHHHHHHHcCCeEEEec
No 461
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=23.95 E-value=3.9e+02 Score=23.17 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=31.7
Q ss_pred chhhhhhhcCC--CCCceEEEEecCcccCCHHHHHHHHHHHhhC-CCcEEEE
Q 046033 228 DTKIMDWLSRK--EPSSVVYVSFGSEYFLSKEEMNELASGLLLS-EVSFIWV 276 (434)
Q Consensus 228 ~~~~~~~l~~~--~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~-~~~~i~~ 276 (434)
.+.+.+++... ...+++|+...|. ...+....+.+++++. +..+...
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~ 66 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHL 66 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEE
Confidence 44566666554 3356999987765 3457788888899888 7765544
No 462
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=23.88 E-value=2.7e+02 Score=31.24 Aligned_cols=82 Identities=17% Similarity=0.181 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHh
Q 046033 6 PYLALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPCTFPELHDPYNHTTKNIPRHLIPTLIEAFDAA 85 (434)
Q Consensus 6 p~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (434)
-++.+|+.|.+.|++| ++++...+.+.+ .|+....+..+ . . -
T Consensus 951 ~l~~~a~~l~~~G~~i--~aT~gT~~~l~~-------~gi~~~~v~~~---~---------------~-----------~ 992 (1066)
T PRK05294 951 EVVELAKRLLELGFKI--LATSGTAKFLRE-------AGIPVELVNKV---H---------------E-----------G 992 (1066)
T ss_pred HHHHHHHHHHHcCCEE--EEccHHHHHHHH-------CCCeeEEEeec---c---------------C-----------c
Confidence 3566777777777765 345556666666 56666555211 0 0 1
Q ss_pred HHHHHHHHhhcCCCEEEEcCC-------CchHHHHHHHcCCcEEEEe
Q 046033 86 KPAFCNVLETLKPTLVIYDLF-------QPWAAEAAYQHDIAAVAFV 125 (434)
Q Consensus 86 ~~~~~~~l~~~~pDlVi~d~~-------~~~~~~~A~~~giP~v~~~ 125 (434)
.+.+.+++++.+.|+||.... .+..-..|-..|||+++..
T Consensus 993 ~~~i~~~i~~~~idlvIn~~~~~~~~~~g~~iRr~Av~~~ip~~T~~ 1039 (1066)
T PRK05294 993 RPHIVDLIKNGEIDLVINTPTGRQAIRDGFSIRRAALEYKVPYITTL 1039 (1066)
T ss_pred CccHHHHHHcCCeEEEEECCCCcccccccHHHHHHHHHcCCCEEecH
Confidence 244668889999999998743 2334577888999999543
No 463
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=23.85 E-value=1.1e+02 Score=28.35 Aligned_cols=33 Identities=12% Similarity=0.225 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEE
Q 046033 9 ALAKKLSQQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLID 49 (434)
Q Consensus 9 ~lA~~L~~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~ 49 (434)
.+|..|.+.||+|++++... .+.+.. .|+.+..
T Consensus 19 ~lA~~L~~~g~~V~~~~r~~-~~~~~~-------~g~~~~~ 51 (313)
T PRK06249 19 FYGAMLARAGFDVHFLLRSD-YEAVRE-------NGLQVDS 51 (313)
T ss_pred HHHHHHHHCCCeEEEEEeCC-HHHHHh-------CCeEEEe
Confidence 46889999999999999865 444555 5666543
No 464
>PRK13337 putative lipid kinase; Reviewed
Probab=23.78 E-value=3.1e+02 Score=25.30 Aligned_cols=28 Identities=18% Similarity=0.106 Sum_probs=22.1
Q ss_pred cceEEeccCcchHHHHHHh------CCcEEeccC
Q 046033 323 IGGFISHCGWGSTVEGIMY------GVPIIAVPM 350 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~~------GvP~v~~P~ 350 (434)
.+.+|..||=||+.|++.. ..|+-++|.
T Consensus 58 ~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 58 FDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred CCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 3569999999999998862 347888895
No 465
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=23.66 E-value=88 Score=28.44 Aligned_cols=35 Identities=11% Similarity=0.141 Sum_probs=23.8
Q ss_pred HHHhhcCCCEEEEcCCCch------HHHHHHHcCCcEEEEe
Q 046033 91 NVLETLKPTLVIYDLFQPW------AAEAAYQHDIAAVAFV 125 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~~~------~~~~A~~~giP~v~~~ 125 (434)
|.+.+.+||+||++..... ....-+..|+|++.+.
T Consensus 73 E~I~~l~PDlIi~~~~~~~~~~~~~~~~~L~~~gipv~~~~ 113 (284)
T cd01148 73 ETVLAARPDLVFGGWSYGFDKGGLGTPDSLAELGIKTYILP 113 (284)
T ss_pred HHHhcCCCCEEEEecccccCCCCCCCHHHHHHCCCeEEECc
Confidence 4566689999999743211 1344556899999875
No 466
>PRK08760 replicative DNA helicase; Provisional
Probab=23.46 E-value=3.6e+02 Score=26.99 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHH-hCCCEEEEEeCCCchhhhhh
Q 046033 4 ITPYLALAKKLS-QQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 4 ~~p~l~lA~~L~-~~Gh~V~~~~~~~~~~~v~~ 35 (434)
..-++.+|...+ +.|+.|.|++-+...+.+..
T Consensus 243 Tafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~ 275 (476)
T PRK08760 243 TTFALNIAEYAAIKSKKGVAVFSMEMSASQLAM 275 (476)
T ss_pred hHHHHHHHHHHHHhcCCceEEEeccCCHHHHHH
Confidence 345677787775 45999999999977765544
No 467
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.18 E-value=5e+02 Score=26.57 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=36.8
Q ss_pred EEeccCcchHHHH--HHhCCcEEeccCCCChhhHHHHHHhhce-eeeecccccCCcccHHHHHHHHHHHhc
Q 046033 326 FISHCGWGSTVEG--IMYGVPIIAVPMVLDQLFNAKMVADIGV-GLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 326 ~I~hgG~~s~~ea--l~~GvP~v~~P~~~dq~~na~~~~~~G~-g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
++..||++.+... ..++-+.... .....+..++..+..|+ |.++. +.++|..++++.+.
T Consensus 472 V~NN~~y~~i~~~q~~~~~~~~~~~-~~~~~~d~~~~A~a~G~~~~~v~--------~~~eL~~al~~a~~ 533 (572)
T PRK08979 472 NLNNRFLGMVKQWQDMIYQGRHSHS-YMDSVPDFAKIAEAYGHVGIRIS--------DPDELESGLEKALA 533 (572)
T ss_pred EEeCCccHHHHHHHHHHhCCccccc-CCCCCCCHHHHHHHCCCeEEEEC--------CHHHHHHHHHHHHh
Confidence 7788888876532 2233222111 11123567888888876 55664 78999999998875
No 468
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=23.17 E-value=5.9e+02 Score=25.94 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCC-CCcEEEecccCHH--------HHhcccCcceEEecc
Q 046033 260 NELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGN-NKGMVVQGWAPQA--------KILGHGSIGGFISHC 330 (434)
Q Consensus 260 ~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~v~~~~~~p~~--------~il~~~~~~~~I~hg 330 (434)
+.+++.|++.|.+.++.+.+.... .+.+.. . ..++.+..-.... .-...-...++++|.
T Consensus 5 ~~l~~~L~~~Gv~~vFgvpG~~~~----------~l~~~l--~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~ 72 (558)
T TIGR00118 5 EAIIESLKDEGVKTVFGYPGGAIL----------PIYDAL--YNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTS 72 (558)
T ss_pred HHHHHHHHHcCCCEEEeCCCcchH----------HHHHHh--hccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECC
Q ss_pred Ccc------hHHHHHHhCCcEEec-------------cCCCChhhHHHHHHhhceeeeecccccCCcccHHHHHHHHHHH
Q 046033 331 GWG------STVEGIMYGVPIIAV-------------PMVLDQLFNAKMVADIGVGLEVPRDEINQRVRKEELARVFKQV 391 (434)
Q Consensus 331 G~~------s~~eal~~GvP~v~~-------------P~~~dq~~na~~~~~~G~g~~~~~~~~~~~~~~~~l~~~v~~l 391 (434)
|.| .+.+|...++|+|++ .+..||....+-+.+ ....+. +++++.+.|++.
T Consensus 73 GpG~~n~l~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk--~~~~v~--------~~~~~~~~v~~A 142 (558)
T TIGR00118 73 GPGATNLVTGIATAYMDSIPMVVFTGQVPTSLIGSDAFQEADILGITMPITK--HSFQVK--------SAEDIPRIIKEA 142 (558)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEecCCCccccCCCCCcccChhhhhcCccc--eeEEeC--------CHHHHHHHHHHH
Q ss_pred hc
Q 046033 392 VE 393 (434)
Q Consensus 392 l~ 393 (434)
+.
T Consensus 143 ~~ 144 (558)
T TIGR00118 143 FH 144 (558)
T ss_pred HH
No 469
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=23.17 E-value=3.3e+02 Score=20.47 Aligned_cols=90 Identities=11% Similarity=0.103 Sum_probs=38.5
Q ss_pred cEEEEecchHHHHHhhhccCC-CCCCCCCcCCCCcccccccccccc-cc-CCchhHHHHHHhhhcCCcEEEEcCCchhcH
Q 046033 120 AAVAFVTIAAASFSFFLQNSS-LKFPFPEFDLPESEIQKMTQFKHR-IV-NGTENRDRFLKAIDLSCKLVLVKTSREIES 196 (434)
Q Consensus 120 P~v~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (434)
|++.+++.++-.......... .++|.....++.+. ..+..++.. .. .....+.++...+.. ...+++-..=+-++
T Consensus 1 pf~YvS~SPwnly~~l~~Fl~~~~~P~G~~~Lr~~~-~~~~~~~~~~~~~~K~~~i~~i~~~fP~-~kfiLIGDsgq~Dp 78 (100)
T PF09949_consen 1 PFFYVSNSPWNLYPFLRDFLRRNGFPAGPLLLRDYG-PSLSGLFKSGAEEHKRDNIERILRDFPE-RKFILIGDSGQHDP 78 (100)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhcCCCCCceEcccCC-ccccccccCCchhHHHHHHHHHHHHCCC-CcEEEEeeCCCcCH
Confidence 677778777655543222221 23444333333331 111222111 11 122334455555554 45555555445555
Q ss_pred HHHHHHhhhcCCcee
Q 046033 197 KDLHYLSYITKKETI 211 (434)
Q Consensus 197 ~~~~~~~~~~~~~~~ 211 (434)
+.-..+...+|.++.
T Consensus 79 eiY~~ia~~~P~~i~ 93 (100)
T PF09949_consen 79 EIYAEIARRFPGRIL 93 (100)
T ss_pred HHHHHHHHHCCCCEE
Confidence 444444444444443
No 470
>PRK07773 replicative DNA helicase; Validated
Probab=23.14 E-value=5.8e+02 Score=27.93 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCEEEEcCCCch-------------------HHHHHHHcCCcEEEEecchHH
Q 046033 88 AFCNVLETLKPTLVIYDLFQPW-------------------AAEAAYQHDIAAVAFVTIAAA 130 (434)
Q Consensus 88 ~~~~~l~~~~pDlVi~d~~~~~-------------------~~~~A~~~giP~v~~~~~~~~ 130 (434)
.++++.+..+.|+||.|++... ...+|+.++||++.++...-.
T Consensus 318 ~~r~~~~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~ 379 (886)
T PRK07773 318 KARRLRQEANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVALSQLSRG 379 (886)
T ss_pred HHHHHHHhcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEecccCcc
Confidence 3444555567999999953322 235788999999999877654
No 471
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=23.01 E-value=3e+02 Score=25.14 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=51.5
Q ss_pred hhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcEEEecccC
Q 046033 234 WLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGMVVQGWAP 313 (434)
Q Consensus 234 ~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~~~~~~p 313 (434)
+|... +.++|+++|+.+ .....+...|...|.++......+ . .+ .
T Consensus 126 ~L~~A--~rI~~~G~g~S~----~vA~~~~~~l~~ig~~~~~~~d~~-------------------------~---~~-~ 170 (281)
T COG1737 126 LLAKA--RRIYFFGLGSSG----LVASDLAYKLMRIGLNVVALSDTH-------------------------G---QL-M 170 (281)
T ss_pred HHHcC--CeEEEEEechhH----HHHHHHHHHHHHcCCceeEecchH-------------------------H---HH-H
Confidence 44443 348888777654 445556667777777765552211 0 11 2
Q ss_pred HHHHhcccCcceEEeccCcc-----hHHHHHHhCCcEEeccCCCCh
Q 046033 314 QAKILGHGSIGGFISHCGWG-----STVEGIMYGVPIIAVPMVLDQ 354 (434)
Q Consensus 314 ~~~il~~~~~~~~I~hgG~~-----s~~eal~~GvP~v~~P~~~dq 354 (434)
+...+...++-.+|++.|.. ....|-.+|+|+|.+-...+-
T Consensus 171 ~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~s 216 (281)
T COG1737 171 QLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADS 216 (281)
T ss_pred HHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 34445555666678888864 445567789999998554433
No 472
>PHA02754 hypothetical protein; Provisional
Probab=22.87 E-value=1.7e+02 Score=19.33 Aligned_cols=25 Identities=16% Similarity=0.399 Sum_probs=19.3
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHhcc
Q 046033 388 FKQVVEQEEGQQIKRKAKELSESIKKKG 415 (434)
Q Consensus 388 v~~ll~~~~~~~~~~~a~~l~~~~~~~~ 415 (434)
+.+++. +..+++..+++++.+.+.|
T Consensus 7 i~k~i~---eK~Fke~MRelkD~LSe~G 31 (67)
T PHA02754 7 IPKAIM---EKDFKEAMRELKDILSEAG 31 (67)
T ss_pred HHHHHH---HhHHHHHHHHHHHHHhhCc
Confidence 344555 5789999999999998766
No 473
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=22.84 E-value=1e+02 Score=30.77 Aligned_cols=55 Identities=22% Similarity=0.143 Sum_probs=30.9
Q ss_pred ccHHHHHHHHHHhHHHHHHHHhhcCCCEEEEcCC--CchHHHHHHHcCCcEEEEecch
Q 046033 73 HLIPTLIEAFDAAKPAFCNVLETLKPTLVIYDLF--QPWAAEAAYQHDIAAVAFVTIA 128 (434)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~~pDlVi~d~~--~~~~~~~A~~~giP~v~~~~~~ 128 (434)
+.+..+.........++.+.+ ..+||+|+..+. ...|.++++++|||...+....
T Consensus 378 ~lWPyLe~fa~d~~~~i~~e~-~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHsL 434 (550)
T PF00862_consen 378 DLWPYLEEFADDAEREILAEL-QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHSL 434 (550)
T ss_dssp G-GGGHHHHHHHHHHHHHHHH-TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS-
T ss_pred hchhhHHHHHHHHHHHHHHHh-CCCCcEEEeccCcchHHHHHHHhhcCCceehhhhcc
Confidence 445555555544434333333 247999998732 2467899999999998776554
No 474
>PF13941 MutL: MutL protein
Probab=22.79 E-value=3.5e+02 Score=26.81 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=29.3
Q ss_pred eEEeccCcchHHHHHHhCCcEEeccCCCChhhHHHHHHh-hceeeee
Q 046033 325 GFISHCGWGSTVEGIMYGVPIIAVPMVLDQLFNAKMVAD-IGVGLEV 370 (434)
Q Consensus 325 ~~I~hgG~~s~~eal~~GvP~v~~P~~~dq~~na~~~~~-~G~g~~~ 370 (434)
++|-=||+.|-.-++..|-|..---...++++--+.||- +|+.+..
T Consensus 251 lvVDIGGATTDVhSv~~~~~~~~~~~~~~ep~~kRTVEGDLGmr~sa 297 (457)
T PF13941_consen 251 LVVDIGGATTDVHSVAEGSPEIPGIVLKPEPYAKRTVEGDLGMRYSA 297 (457)
T ss_pred EEEEccCcccchhhhccCCccccccccCCcchhhhheeccccceech
Confidence 467789999999999888887555444445554444444 2444333
No 475
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=22.68 E-value=6.8e+02 Score=25.00 Aligned_cols=85 Identities=9% Similarity=0.035 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEEecCCCCCccccccCchhHHHhhcCCCCcE-EEecccCHHHHhcccCcceEEeccCcch
Q 046033 256 KEEMNELASGLLLSEVSFIWVVRFHSEGNFTIEEALPQGFAEEIQGNNKGM-VVQGWAPQAKILGHGSIGGFISHCGWGS 334 (434)
Q Consensus 256 ~~~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v-~~~~~~p~~~il~~~~~~~~I~hgG~~s 334 (434)
..++.++-.++...+..-||+-..+.--.....+.+ ..-. ....+ .+.+-+...++|.+-+--.++|. ++
T Consensus 166 ~~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~l----t~~~--~~~r~~ll~edfnpisll~~~dkvy~~ts---~m 236 (671)
T COG3563 166 STFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYL----TQLS--QQHRVHLLAEDFNPISLLQNVDKVYCVTS---QM 236 (671)
T ss_pred hHHHHHHHHHHhcCCcccEEEEeCCchhcCcccchh----hhhc--cCceEEEecccCChHHHHHhcceeEEeec---cc
Confidence 355667778887777777887554421100001111 1111 22333 34455666788887665444443 34
Q ss_pred HHHHHHhCCcEEecc
Q 046033 335 TVEGIMYGVPIIAVP 349 (434)
Q Consensus 335 ~~eal~~GvP~v~~P 349 (434)
-.||+..|+|.+.+.
T Consensus 237 gfeall~~~~~~~fg 251 (671)
T COG3563 237 GFEALLCGKPLTTFG 251 (671)
T ss_pred cHHHHhcCCceeeec
Confidence 579999999998874
No 476
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=22.66 E-value=4.2e+02 Score=25.36 Aligned_cols=35 Identities=17% Similarity=0.012 Sum_probs=24.0
Q ss_pred eEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEEEec
Q 046033 243 VVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWVVRF 279 (434)
Q Consensus 243 vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~~~~ 279 (434)
++++++|+.+. -.-+..+.++|.+.|+++.+.+..
T Consensus 3 Il~~~~p~~GH--v~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 3 VLITTIGSRGD--VQPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred EEEEeCCCcch--HHHHHHHHHHHHHCCCeEEEeeCH
Confidence 78888887553 233456777788888888777654
No 477
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=22.63 E-value=3.1e+02 Score=22.36 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=29.7
Q ss_pred HHHhHHHHHHHHhhcCCCEEEEcCCCch---------------HHHHHHHcCCcEEEEecc
Q 046033 82 FDAAKPAFCNVLETLKPTLVIYDLFQPW---------------AAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 82 ~~~~~~~~~~~l~~~~pDlVi~d~~~~~---------------~~~~A~~~giP~v~~~~~ 127 (434)
+....+.+.+++...+||.|+.+-..+. ...++...|+|+.-++|.
T Consensus 44 l~~I~~~l~~~i~~~~Pd~vaiE~~~~~~n~~s~~~l~~~~Gvi~~~~~~~~i~v~e~~P~ 104 (154)
T cd00529 44 LKTIYDGLNEVIDQFQPDVVAIERVFFAKNPDSALKLGQARGALILALANRNLPVFEYTPN 104 (154)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEhhcccChHHHHHHHHHHHHHHHHHHHcCCCEEEEccC
Confidence 4445678888999999999988822111 123445567777766544
No 478
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=22.55 E-value=1.7e+02 Score=26.24 Aligned_cols=40 Identities=18% Similarity=0.045 Sum_probs=29.5
Q ss_pred HHHHHHhhcCCCEEEEcCC-----CchHHHHHHHcCCcEEEEecc
Q 046033 88 AFCNVLETLKPTLVIYDLF-----QPWAAEAAYQHDIAAVAFVTI 127 (434)
Q Consensus 88 ~~~~~l~~~~pDlVi~d~~-----~~~~~~~A~~~giP~v~~~~~ 127 (434)
.-..++++++.|+||+=-. +..=..+|..+|||+|.+.--
T Consensus 187 ~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 187 DNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 3456888899999998621 122368999999999987643
No 479
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=22.53 E-value=1e+02 Score=27.30 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCCc
Q 046033 5 TPYLALAKKLSQQNFHIYFCSTPIN 29 (434)
Q Consensus 5 ~p~l~lA~~L~~~Gh~V~~~~~~~~ 29 (434)
-+++.+.+.|+++||.|.|+|+-..
T Consensus 123 p~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 123 PEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 4678899999999999999987653
No 480
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=22.47 E-value=1.2e+02 Score=21.54 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=18.8
Q ss_pred CChHHHHHHHHHHHhCCCEEEEE
Q 046033 2 GHITPYLALAKKLSQQNFHIYFC 24 (434)
Q Consensus 2 GH~~p~l~lA~~L~~~Gh~V~~~ 24 (434)
.|...+-.+|+.|.+.|+.|...
T Consensus 27 eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 27 EHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEE
Confidence 37778889999999999988744
No 481
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=22.39 E-value=5.7e+02 Score=26.27 Aligned_cols=58 Identities=14% Similarity=0.262 Sum_probs=37.6
Q ss_pred EEeccCcchHH-HHHHhCCcEEeccCCCChhhHHHHHHhhce-eeeecccccCCcccHHHHHHHHHHHhc
Q 046033 326 FISHCGWGSTV-EGIMYGVPIIAVPMVLDQLFNAKMVADIGV-GLEVPRDEINQRVRKEELARVFKQVVE 393 (434)
Q Consensus 326 ~I~hgG~~s~~-eal~~GvP~v~~P~~~dq~~na~~~~~~G~-g~~~~~~~~~~~~~~~~l~~~v~~ll~ 393 (434)
++..||++.+. +....|.+.... .......++.++..|+ +..+. +.++|.+++++.++
T Consensus 459 V~NN~~~g~i~~~q~~~~~~~~~~--~~~~~df~~lA~a~G~~~~~v~--------~~~el~~al~~a~~ 518 (578)
T PRK06546 459 VFNNSTLGMVKLEMLVDGLPDFGT--DHPPVDYAAIAAALGIHAVRVE--------DPKDVRGALREAFA 518 (578)
T ss_pred EEECCccccHHHHHHhcCCCcccc--cCCCCCHHHHHHHCCCeeEEeC--------CHHHHHHHHHHHHh
Confidence 77888888764 222233332111 1234677888888887 44443 79999999999874
No 482
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=22.38 E-value=4.9e+02 Score=22.13 Aligned_cols=113 Identities=10% Similarity=0.065 Sum_probs=61.7
Q ss_pred HHHHHHHHHHH-hCCCEEEEEeCCCchhhhhhhhcccCCCCeEEEEecCCC-----------CCCCCCCCCCCCCCCCcc
Q 046033 5 TPYLALAKKLS-QQNFHIYFCSTPINLQSMSQNLQEKFSTSIQLIDLQLPC-----------TFPELHDPYNHTTKNIPR 72 (434)
Q Consensus 5 ~p~l~lA~~L~-~~Gh~V~~~~~~~~~~~v~~~~~~~~~~g~~f~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 72 (434)
..+..+|+.+. +.|.++.+-++.+.++.++. ..|-+..+.... .-.|+... ...+.+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g-------ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~-~~eT~G--- 110 (183)
T PF02056_consen 42 EIVERLARRMVEEAGADLKVEATTDRREALEG-------ADFVINQIRVGGLEAREIDEEIPLKYGIVGT-IQETVG--- 110 (183)
T ss_dssp HHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT-------ESEEEE---TTHHHHHHHHHHTGGCCTTT-B-TTSSST---
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC-------CCEEEEEeeecchHHHHHHHHHHHHhCCccc-cccccC---
Confidence 44567788886 45999999888888888877 555555541110 00122111 011111
Q ss_pred ccHHHHHHHHHHh--HHHHHHHHhhcCCCEEEEcCCCchHH---HHHHHcC-CcEEEEecchHH
Q 046033 73 HLIPTLIEAFDAA--KPAFCNVLETLKPTLVIYDLFQPWAA---EAAYQHD-IAAVAFVTIAAA 130 (434)
Q Consensus 73 ~~~~~~~~~~~~~--~~~~~~~l~~~~pDlVi~d~~~~~~~---~~A~~~g-iP~v~~~~~~~~ 130 (434)
.-.+...++.. .-++.+.+++.-||.-+..+.++.+. .+.+.++ +++|-++..+..
T Consensus 111 --~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~ 172 (183)
T PF02056_consen 111 --PGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQG 172 (183)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHH
T ss_pred --ccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHH
Confidence 11222222221 23455566677899999887777663 3344566 999999877654
No 483
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=22.21 E-value=1.2e+02 Score=28.90 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=30.3
Q ss_pred cEEEecccCHH---HHhcccCcceEEeccCcchHHHHHHhCCcEEe
Q 046033 305 GMVVQGWAPQA---KILGHGSIGGFISHCGWGSTVEGIMYGVPIIA 347 (434)
Q Consensus 305 ~v~~~~~~p~~---~il~~~~~~~~I~hgG~~s~~eal~~GvP~v~ 347 (434)
.+.+.+|++|. .+|-.|++ =+-. |=-|+.-|..+|+|.|=
T Consensus 243 ~~~~LPf~~Q~~yD~LLW~cD~--NfVR-GEDSFVRAqWAgkPfvW 285 (371)
T TIGR03837 243 TVAVLPFVPQDDYDRLLWACDL--NFVR-GEDSFVRAQWAGKPFVW 285 (371)
T ss_pred EEEEcCCCChhhHHHHHHhChh--cEee-chhHHHHHHHcCCCcee
Confidence 35566899886 67776666 4444 67899999999999973
No 484
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=22.11 E-value=82 Score=30.52 Aligned_cols=38 Identities=11% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHhcccCcceEEeccCcchHHHHHH-------h--CCcEEeccCCCC
Q 046033 316 KILGHGSIGGFISHCGWGSTVEGIM-------Y--GVPIIAVPMVLD 353 (434)
Q Consensus 316 ~il~~~~~~~~I~hgG~~s~~eal~-------~--GvP~v~~P~~~d 353 (434)
..|..-.++++|.=||-+|..-|.. + |+|+|.+|-..|
T Consensus 106 ~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTID 152 (403)
T PRK06555 106 ERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTID 152 (403)
T ss_pred HHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeee
Confidence 3456667889999999999876643 3 899999997554
No 485
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=22.10 E-value=79 Score=26.22 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=21.7
Q ss_pred cceEEeccCcc------hHHHHHHhCCcEEecc
Q 046033 323 IGGFISHCGWG------STVEGIMYGVPIIAVP 349 (434)
Q Consensus 323 ~~~~I~hgG~~------s~~eal~~GvP~v~~P 349 (434)
..++++|+|.| .+.+|...++|+|++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 34488888865 6779999999999995
No 486
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=22.09 E-value=3.2e+02 Score=25.39 Aligned_cols=32 Identities=13% Similarity=0.011 Sum_probs=25.7
Q ss_pred HHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEec
Q 046033 91 NVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~ 126 (434)
.+++ +.|++|+.= .+...+|..+|+|.|.++.
T Consensus 249 ali~--~a~l~I~nD--SGp~HlA~A~g~p~valfG 280 (322)
T PRK10964 249 RVLA--GAKAVVSVD--TGLSHLTAALDRPNITLYG 280 (322)
T ss_pred HHHH--hCCEEEecC--CcHHHHHHHhCCCEEEEEC
Confidence 4444 669999873 4789999999999999875
No 487
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.02 E-value=89 Score=26.76 Aligned_cols=43 Identities=14% Similarity=0.087 Sum_probs=32.3
Q ss_pred hhcCCCCCceEEEEecCcccCCHHHHHHHHHHHhhCCCcEEEE
Q 046033 234 WLSRKEPSSVVYVSFGSEYFLSKEEMNELASGLLLSEVSFIWV 276 (434)
Q Consensus 234 ~l~~~~~~~vV~vs~Gs~~~~~~~~~~~i~~~l~~~~~~~i~~ 276 (434)
|+....+.+.++|+|=+.+..+-+....++++|.+.|..+|=.
T Consensus 9 Fa~aK~enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIEL 51 (268)
T KOG4175|consen 9 FARAKSENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIEL 51 (268)
T ss_pred HHHHHhcCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEe
Confidence 4444444568999998888877778888999999888876543
No 488
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=21.96 E-value=1e+02 Score=25.98 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=25.7
Q ss_pred ChHH-HHHHHHHHH-hCCCEEEEEeCCCchhhhhh
Q 046033 3 HITP-YLALAKKLS-QQNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 3 H~~p-~l~lA~~L~-~~Gh~V~~~~~~~~~~~v~~ 35 (434)
|... .+.+.+.|+ ++||+|.++.++...+.+.-
T Consensus 11 ~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~ 45 (174)
T TIGR02699 11 DKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKW 45 (174)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHH
Confidence 4433 778889998 45999999999988876664
No 489
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=21.93 E-value=1e+02 Score=26.93 Aligned_cols=29 Identities=17% Similarity=0.448 Sum_probs=22.2
Q ss_pred CCChHHHHH---HHHHHHhCCCEEEEEeCCCc
Q 046033 1 HGHITPYLA---LAKKLSQQNFHIYFCSTPIN 29 (434)
Q Consensus 1 ~GH~~p~l~---lA~~L~~~Gh~V~~~~~~~~ 29 (434)
.||+.+++. +++-|+.+|++|.|+++-..
T Consensus 36 iGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd 67 (213)
T cd00672 36 IGHARTYVVFDVLRRYLEDLGYKVRYVQNITD 67 (213)
T ss_pred cccchhHHHHHHHHHHHHhcCCeeEEEeecCC
Confidence 388887764 47888888999999976533
No 490
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=21.91 E-value=2.5e+02 Score=20.96 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=25.2
Q ss_pred HHHHHHHhhcCCCEEEEc-CCCchH-HHHHHHcCCcEE
Q 046033 87 PAFCNVLETLKPTLVIYD-LFQPWA-AEAAYQHDIAAV 122 (434)
Q Consensus 87 ~~~~~~l~~~~pDlVi~d-~~~~~~-~~~A~~~giP~v 122 (434)
.++.++++...+|+||.| .+++.- .-+.+.+|++++
T Consensus 47 eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 47 EEIKELIEELDADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred HHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 455567777899999999 444433 466777888876
No 491
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=21.85 E-value=6.9e+02 Score=23.70 Aligned_cols=23 Identities=4% Similarity=-0.044 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCEEEEEeCCCc
Q 046033 7 YLALAKKLSQQNFHIYFCSTPIN 29 (434)
Q Consensus 7 ~l~lA~~L~~~Gh~V~~~~~~~~ 29 (434)
.-.+++.|.+.|.++.+++.+..
T Consensus 14 l~~l~~~~~~~g~r~lvVt~~~~ 36 (357)
T cd08181 14 VEKHGEELAALGKRALIVTGKSS 36 (357)
T ss_pred HHHHHHHHHHcCCEEEEEeCCch
Confidence 34567777777988888887644
No 492
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=21.75 E-value=2.3e+02 Score=22.27 Aligned_cols=38 Identities=18% Similarity=0.054 Sum_probs=33.6
Q ss_pred HHHHHhhcCCCEEEEcCCCchHHHHHHHcCCcEEEEec
Q 046033 89 FCNVLETLKPTLVIYDLFQPWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 89 ~~~~l~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~ 126 (434)
+.+++++..+|+||+......+..+-+..||-++....
T Consensus 57 ~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 57 IAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 44788999999999999989999999999999987665
No 493
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=21.75 E-value=4.1e+02 Score=26.19 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=12.4
Q ss_pred cchHHHHHHhCCcEEecc
Q 046033 332 WGSTVEGIMYGVPIIAVP 349 (434)
Q Consensus 332 ~~s~~eal~~GvP~v~~P 349 (434)
.+.+.-+...|+|+..+.
T Consensus 249 G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 249 GGALSAVAETGAPIKFIG 266 (437)
T ss_pred cHHHHHHHHHCcCEEEEe
Confidence 344555667799998883
No 494
>PRK03202 6-phosphofructokinase; Provisional
Probab=21.67 E-value=94 Score=29.14 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=29.6
Q ss_pred HhcccCcceEEeccCcchHHHHHH---hCCcEEeccCCCC
Q 046033 317 ILGHGSIGGFISHCGWGSTVEGIM---YGVPIIAVPMVLD 353 (434)
Q Consensus 317 il~~~~~~~~I~hgG~~s~~eal~---~GvP~v~~P~~~d 353 (434)
.|..-.++++|.=||.+|...|.. +|+|+|.+|-..|
T Consensus 88 ~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTID 127 (320)
T PRK03202 88 NLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTID 127 (320)
T ss_pred HHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccccc
Confidence 344457888999999999987755 5999999997654
No 495
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=21.58 E-value=2e+02 Score=26.30 Aligned_cols=36 Identities=19% Similarity=0.104 Sum_probs=23.2
Q ss_pred HHHhhcCCCEEEEcCCC-chHHHHHHHcCCcEEEEec
Q 046033 91 NVLETLKPTLVIYDLFQ-PWAAEAAYQHDIAAVAFVT 126 (434)
Q Consensus 91 ~~l~~~~pDlVi~d~~~-~~~~~~A~~~giP~v~~~~ 126 (434)
+.+...+||+||+.... .-....-+.+|+|++.+..
T Consensus 85 E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~ 121 (289)
T TIGR03659 85 EKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNL 121 (289)
T ss_pred HHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcC
Confidence 45666899999987331 1223344567999987643
No 496
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=21.58 E-value=7.7e+02 Score=24.10 Aligned_cols=31 Identities=13% Similarity=0.171 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHh-CCCEEEEEeCCCchhhhhh
Q 046033 5 TPYLALAKKLSQ-QNFHIYFCSTPINLQSMSQ 35 (434)
Q Consensus 5 ~p~l~lA~~L~~-~Gh~V~~~~~~~~~~~v~~ 35 (434)
.-++.+|..++. .|+.|.|++.+...+.+..
T Consensus 210 ~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 210 AFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 345667777664 6999999999987777654
No 497
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=21.54 E-value=1.3e+02 Score=26.87 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=25.5
Q ss_pred cCCCEEE-Ec-CCCchHHHHHHHcCCcEEEEecchH
Q 046033 96 LKPTLVI-YD-LFQPWAAEAAYQHDIAAVAFVTIAA 129 (434)
Q Consensus 96 ~~pDlVi-~d-~~~~~~~~~A~~~giP~v~~~~~~~ 129 (434)
..||+|| +| ....-++.=|.++|||+|.++.+..
T Consensus 117 ~~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~DTds 152 (249)
T PTZ00254 117 MEPRLLIVTDPRTDHQAIREASYVNIPVIALCDTDS 152 (249)
T ss_pred CCCCEEEEeCCCcchHHHHHHHHhCCCEEEEecCCC
Confidence 3788775 55 4445778889999999999875543
No 498
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.51 E-value=88 Score=29.10 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=23.3
Q ss_pred cceEEeccCcchHHHHHHh----CCcEEeccC
Q 046033 323 IGGFISHCGWGSTVEGIMY----GVPIIAVPM 350 (434)
Q Consensus 323 ~~~~I~hgG~~s~~eal~~----GvP~v~~P~ 350 (434)
++++|+-||-||+++++.. ++|++++..
T Consensus 58 ~d~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 58 IDLAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCEEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4559999999999999864 789988855
No 499
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=21.48 E-value=2.1e+02 Score=27.47 Aligned_cols=11 Identities=45% Similarity=0.975 Sum_probs=9.0
Q ss_pred hCCcEEeccCC
Q 046033 341 YGVPIIAVPMV 351 (434)
Q Consensus 341 ~GvP~v~~P~~ 351 (434)
.++|+|.+|..
T Consensus 121 ~~~P~i~IPTt 131 (375)
T cd08194 121 PGLPLIAIPTT 131 (375)
T ss_pred CCCCEEEECCC
Confidence 36899999975
No 500
>PRK14071 6-phosphofructokinase; Provisional
Probab=21.43 E-value=1e+02 Score=29.49 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=29.3
Q ss_pred HHhcccCcceEEeccCcchHHHHHH----hCCcEEeccCCCC
Q 046033 316 KILGHGSIGGFISHCGWGSTVEGIM----YGVPIIAVPMVLD 353 (434)
Q Consensus 316 ~il~~~~~~~~I~hgG~~s~~eal~----~GvP~v~~P~~~d 353 (434)
..|..-.++++|.=||.+|..-+.. .|+|+|.+|-..|
T Consensus 101 ~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTID 142 (360)
T PRK14071 101 DGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTID 142 (360)
T ss_pred HHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEeccccc
Confidence 3455557889999999999866643 3999999997544
Done!